Query 008627
Match_columns 559
No_of_seqs 275 out of 1295
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 14:33:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008627.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008627hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1467 Translation initiation 100.0 1.3E-86 2.8E-91 699.7 32.6 456 37-559 3-464 (556)
2 PRK08535 translation initiatio 100.0 1E-51 2.2E-56 425.0 27.9 224 327-559 2-225 (310)
3 TIGR00511 ribulose_e2b2 ribose 100.0 2.5E-49 5.3E-54 406.0 27.6 219 332-559 2-220 (301)
4 PF01008 IF-2B: Initiation fac 100.0 2.3E-49 4.9E-54 398.6 24.0 212 343-559 1-213 (282)
5 COG1184 GCD2 Translation initi 100.0 4.9E-49 1.1E-53 401.4 26.5 223 328-559 2-224 (301)
6 TIGR00524 eIF-2B_rel eIF-2B al 100.0 2.2E-48 4.8E-53 399.4 27.4 221 331-559 3-234 (303)
7 PRK08335 translation initiatio 100.0 2.1E-46 4.6E-51 379.9 26.7 212 329-559 3-214 (275)
8 PRK05720 mtnA methylthioribose 100.0 1.7E-46 3.7E-51 391.0 26.6 220 331-559 32-262 (344)
9 TIGR00512 salvage_mtnA S-methy 100.0 3.4E-46 7.3E-51 386.8 26.6 220 330-559 28-262 (331)
10 PRK06036 translation initiatio 100.0 1.2E-44 2.5E-49 376.4 25.8 220 331-559 32-262 (339)
11 PRK05772 translation initiatio 100.0 1.2E-43 2.6E-48 371.2 26.9 224 331-559 45-283 (363)
12 PRK08334 translation initiatio 100.0 6.2E-43 1.3E-47 364.6 27.1 222 331-559 43-275 (356)
13 PRK06371 translation initiatio 100.0 2.6E-42 5.7E-47 357.1 23.5 201 331-559 41-252 (329)
14 KOG1465 Translation initiation 100.0 4.8E-40 1E-44 332.1 24.1 227 328-559 7-267 (353)
15 COG0182 Predicted translation 100.0 6.8E-40 1.5E-44 334.3 23.3 224 329-559 31-265 (346)
16 KOG1466 Translation initiation 100.0 5.3E-38 1.1E-42 312.2 22.4 206 349-559 28-235 (313)
17 PRK06372 translation initiatio 100.0 1.4E-35 2.9E-40 297.9 19.9 183 339-559 6-188 (253)
18 KOG1468 Predicted translation 100.0 1.1E-33 2.4E-38 283.3 19.9 230 319-559 24-270 (354)
19 PRK00702 ribose-5-phosphate is 96.4 0.033 7.1E-07 56.0 11.3 95 440-546 6-101 (220)
20 TIGR00021 rpiA ribose 5-phosph 96.3 0.033 7.2E-07 56.0 11.0 87 442-540 3-91 (218)
21 cd01398 RPI_A RPI_A: Ribose 5- 96.0 0.039 8.4E-07 55.0 9.7 92 442-547 3-98 (213)
22 PRK10434 srlR DNA-bindng trans 94.1 0.26 5.6E-06 50.3 9.1 92 441-541 78-184 (256)
23 PRK09802 DNA-binding transcrip 94.0 0.5 1.1E-05 48.6 11.0 92 441-541 93-198 (269)
24 PRK10411 DNA-binding transcrip 93.8 0.65 1.4E-05 47.0 11.3 92 440-541 79-184 (240)
25 PF00455 DeoRC: DeoR C termina 93.7 0.39 8.5E-06 45.6 9.1 92 440-540 5-110 (161)
26 COG1349 GlpR Transcriptional r 92.9 0.56 1.2E-05 47.9 9.2 93 440-542 77-184 (253)
27 PRK13509 transcriptional repre 92.3 0.87 1.9E-05 46.3 9.7 89 440-539 79-181 (251)
28 PRK10906 DNA-binding transcrip 91.7 0.95 2E-05 46.2 9.1 92 440-540 77-182 (252)
29 PLN02384 ribose-5-phosphate is 91.6 1.8 3.9E-05 45.1 11.0 94 441-546 36-132 (264)
30 KOG0259 Tyrosine aminotransfer 89.6 1.6 3.5E-05 47.7 8.8 114 439-559 107-235 (447)
31 PRK13978 ribose-5-phosphate is 89.1 3.5 7.5E-05 42.1 10.5 93 441-545 8-102 (228)
32 PRK10681 DNA-binding transcrip 88.0 3.7 7.9E-05 41.8 9.9 91 441-540 79-183 (252)
33 PF02254 TrkA_N: TrkA-N domain 84.4 3.5 7.6E-05 35.8 6.7 82 458-555 1-86 (116)
34 PF00535 Glycos_transf_2: Glyc 77.1 7.1 0.00015 34.0 6.2 81 457-537 3-94 (169)
35 PRK11557 putative DNA-binding 75.0 41 0.00088 34.1 11.8 55 491-545 188-244 (278)
36 PRK14106 murD UDP-N-acetylmura 73.8 22 0.00048 38.4 10.1 92 454-559 4-95 (450)
37 TIGR01437 selA_rel uncharacter 73.7 24 0.00053 37.5 10.2 135 418-559 26-182 (363)
38 PF01073 3Beta_HSD: 3-beta hyd 73.6 5.6 0.00012 40.9 5.2 96 460-558 2-109 (280)
39 COG1737 RpiR Transcriptional r 73.5 99 0.0021 32.0 14.3 44 488-531 187-230 (281)
40 PRK01438 murD UDP-N-acetylmura 73.3 16 0.00036 39.9 9.1 72 454-530 15-86 (480)
41 COG0120 RpiA Ribose 5-phosphat 72.4 30 0.00064 35.5 9.9 95 441-547 7-102 (227)
42 cd01424 MGS_CPS_II Methylglyox 72.4 39 0.00084 29.7 9.6 89 455-559 1-98 (110)
43 TIGR00474 selA seryl-tRNA(sec) 72.0 1.1E+02 0.0024 34.1 15.1 110 446-559 129-248 (454)
44 COG0426 FpaA Uncharacterized f 71.8 53 0.0012 36.2 12.3 128 424-555 183-328 (388)
45 cd06436 GlcNAc-1-P_transferase 69.5 14 0.00031 34.9 6.6 6 508-513 92-97 (191)
46 cd05005 SIS_PHI Hexulose-6-pho 69.2 70 0.0015 30.4 11.3 36 493-528 90-125 (179)
47 PRK11337 DNA-binding transcrip 68.8 1E+02 0.0022 31.5 13.1 48 483-530 192-239 (292)
48 PRK02947 hypothetical protein; 67.1 1.5E+02 0.0033 30.1 14.7 39 491-529 119-168 (246)
49 TIGR03402 FeS_nifS cysteine de 66.6 1.3E+02 0.0029 31.5 13.7 101 454-559 59-169 (379)
50 PF01488 Shikimate_DH: Shikima 66.2 32 0.00069 31.5 8.0 73 454-530 11-83 (135)
51 TIGR03127 RuMP_HxlB 6-phospho 65.2 88 0.0019 29.6 11.1 38 493-530 87-124 (179)
52 cd01423 MGS_CPS_I_III Methylgl 64.2 52 0.0011 29.2 8.8 85 457-559 3-104 (116)
53 cd00532 MGS-like MGS-like doma 63.9 77 0.0017 28.2 9.8 68 479-559 24-102 (112)
54 COG4635 HemG Flavodoxin [Energ 63.5 12 0.00027 36.7 4.8 37 496-532 20-57 (175)
55 PRK13938 phosphoheptose isomer 61.5 1.8E+02 0.0038 28.9 12.8 38 491-528 126-163 (196)
56 PF02142 MGS: MGS-like domain 61.3 14 0.00031 31.8 4.5 76 469-559 4-93 (95)
57 PLN02651 cysteine desulfurase 60.4 1.1E+02 0.0024 32.0 11.8 100 454-559 60-171 (364)
58 PRK15482 transcriptional regul 60.3 1.4E+02 0.003 30.6 12.2 41 489-529 193-233 (285)
59 PLN03209 translocon at the inn 59.5 25 0.00054 40.6 7.2 103 452-557 77-200 (576)
60 PRK04311 selenocysteine syntha 59.3 2.3E+02 0.0049 31.9 14.5 110 446-559 134-253 (464)
61 cd06451 AGAT_like Alanine-glyo 59.1 1E+02 0.0022 31.9 11.1 96 456-559 51-157 (356)
62 KOG3075 Ribose 5-phosphate iso 58.9 36 0.00079 35.5 7.5 94 441-545 28-124 (261)
63 cd00293 USP_Like Usp: Universa 58.6 1.1E+02 0.0023 25.5 9.6 64 469-532 18-103 (130)
64 TIGR03235 DNA_S_dndA cysteine 58.5 1.3E+02 0.0029 31.1 11.9 101 454-559 59-171 (353)
65 PF03853 YjeF_N: YjeF-related 57.6 1.2E+02 0.0026 28.9 10.6 99 437-538 5-112 (169)
66 PRK01710 murD UDP-N-acetylmura 57.5 76 0.0016 34.9 10.4 91 455-559 14-104 (458)
67 PRK08134 O-acetylhomoserine am 56.8 84 0.0018 34.6 10.6 14 546-559 169-182 (433)
68 PF10087 DUF2325: Uncharacteri 56.5 42 0.00091 29.1 6.6 69 483-559 2-78 (97)
69 TIGR00273 iron-sulfur cluster- 56.2 1.8E+02 0.0038 32.5 12.9 26 522-547 181-207 (432)
70 PRK05839 hypothetical protein; 56.1 94 0.002 32.9 10.5 103 452-559 81-191 (374)
71 TIGR01140 L_thr_O3P_dcar L-thr 55.3 72 0.0016 33.1 9.3 99 452-559 62-161 (330)
72 PRK05678 succinyl-CoA syntheta 55.0 91 0.002 32.9 10.0 101 456-558 67-171 (291)
73 PRK07582 cystathionine gamma-l 54.6 91 0.002 33.2 10.1 97 454-559 65-165 (366)
74 TIGR02371 ala_DH_arch alanine 54.5 84 0.0018 33.3 9.7 99 445-546 116-224 (325)
75 PTZ00433 tyrosine aminotransfe 54.4 86 0.0019 33.6 10.0 101 452-559 102-213 (412)
76 CHL00144 odpB pyruvate dehydro 53.7 42 0.00092 35.7 7.4 52 498-554 220-279 (327)
77 PLN02409 serine--glyoxylate am 53.4 84 0.0018 33.7 9.7 51 458-512 64-114 (401)
78 TIGR01019 sucCoAalpha succinyl 52.4 91 0.002 32.8 9.5 101 456-558 65-169 (286)
79 PTZ00187 succinyl-CoA syntheta 51.6 58 0.0013 34.9 8.0 93 456-551 90-186 (317)
80 TIGR02006 IscS cysteine desulf 51.5 2.4E+02 0.0052 30.1 12.7 113 440-559 52-175 (402)
81 TIGR01979 sufS cysteine desulf 51.0 2.2E+02 0.0048 30.0 12.2 99 455-559 81-192 (403)
82 PRK00025 lpxB lipid-A-disaccha 50.9 1.5E+02 0.0032 30.8 10.8 72 456-529 187-268 (380)
83 PRK12475 thiamine/molybdopteri 50.4 1.1E+02 0.0024 32.8 9.9 106 443-559 13-144 (338)
84 PRK08133 O-succinylhomoserine 49.8 1.5E+02 0.0032 32.0 10.9 96 456-559 78-179 (390)
85 COG3109 ProQ Activator of osmo 49.8 26 0.00056 34.8 4.6 27 196-222 102-128 (208)
86 COG0794 GutQ Predicted sugar p 49.6 2.7E+02 0.0058 28.2 11.8 86 435-528 26-136 (202)
87 PRK05613 O-acetylhomoserine am 49.4 1.1E+02 0.0024 33.8 10.0 15 545-559 174-188 (437)
88 PRK05443 polyphosphate kinase; 49.0 47 0.001 39.1 7.4 56 458-513 373-430 (691)
89 cd02525 Succinoglycan_BP_ExoA 48.9 56 0.0012 31.1 6.8 43 460-502 8-53 (249)
90 COG0074 SucD Succinyl-CoA synt 48.9 94 0.002 33.1 8.8 90 456-547 67-158 (293)
91 PRK05234 mgsA methylglyoxal sy 48.5 1.7E+02 0.0037 27.6 9.8 82 467-559 19-109 (142)
92 cd04185 GT_2_like_b Subfamily 48.4 64 0.0014 30.1 7.0 46 457-502 2-48 (202)
93 PRK11302 DNA-binding transcrip 48.3 2.8E+02 0.006 28.0 12.1 44 485-529 182-225 (284)
94 PLN02683 pyruvate dehydrogenas 48.0 60 0.0013 35.1 7.5 76 450-554 223-306 (356)
95 PLN02656 tyrosine transaminase 47.9 1.7E+02 0.0037 31.4 11.0 55 452-512 94-148 (409)
96 PRK08574 cystathionine gamma-s 47.5 1.6E+02 0.0034 31.8 10.6 95 456-559 70-170 (385)
97 PF13090 PP_kinase_C: Polyphos 47.4 16 0.00035 39.6 3.1 47 465-512 50-99 (352)
98 COG0855 Ppk Polyphosphate kina 46.8 40 0.00086 39.5 6.1 48 465-512 384-433 (696)
99 PRK05764 aspartate aminotransf 46.5 2.1E+02 0.0045 30.1 11.2 55 452-512 89-143 (393)
100 PRK07810 O-succinylhomoserine 46.3 2.2E+02 0.0048 30.9 11.6 96 456-559 87-188 (403)
101 TIGR01142 purT phosphoribosylg 45.7 53 0.0011 34.6 6.6 72 457-534 1-74 (380)
102 PF12842 DUF3819: Domain of un 45.7 2.7E+02 0.006 26.4 11.0 93 351-451 29-126 (147)
103 COG0031 CysK Cysteine synthase 45.6 46 0.00099 35.5 6.0 134 345-488 70-204 (300)
104 PRK14101 bifunctional glucokin 45.6 2.1E+02 0.0046 33.0 11.9 43 485-528 522-564 (638)
105 PLN02206 UDP-glucuronate decar 45.5 81 0.0018 34.8 8.2 101 454-558 118-227 (442)
106 TIGR02326 transamin_PhnW 2-ami 45.5 2.4E+02 0.0051 29.4 11.3 96 457-559 57-162 (363)
107 CHL00194 ycf39 Ycf39; Provisio 45.0 1.2E+02 0.0026 31.2 8.9 95 457-558 2-103 (317)
108 cd06442 DPM1_like DPM1_like re 44.6 66 0.0014 30.3 6.5 44 470-514 44-87 (224)
109 COG0373 HemA Glutamyl-tRNA red 44.6 86 0.0019 34.9 8.1 72 454-532 177-248 (414)
110 cd05006 SIS_GmhA Phosphoheptos 44.5 2.8E+02 0.0061 26.2 12.2 44 487-530 110-153 (177)
111 PRK10874 cysteine sulfinate de 44.5 3.4E+02 0.0073 28.7 12.5 115 439-559 67-193 (401)
112 PRK05958 8-amino-7-oxononanoat 44.4 3.2E+02 0.0069 28.2 12.1 98 452-559 97-201 (385)
113 TIGR03392 FeS_syn_CsdA cystein 44.4 3.2E+02 0.0069 28.9 12.2 99 455-559 79-190 (398)
114 TIGR01329 cysta_beta_ly_E cyst 44.3 1.9E+02 0.0041 31.1 10.6 96 456-559 64-164 (378)
115 PLN00143 tyrosine/nicotianamin 44.1 2.6E+02 0.0056 30.1 11.6 116 391-512 8-149 (409)
116 PRK14012 cysteine desulfurase; 44.1 4.2E+02 0.0092 28.2 13.5 100 455-559 67-177 (404)
117 PF13580 SIS_2: SIS domain; PD 44.1 40 0.00086 31.0 4.8 32 452-485 101-135 (138)
118 PRK06702 O-acetylhomoserine am 43.8 1.7E+02 0.0037 32.5 10.4 97 456-559 78-180 (432)
119 cd04192 GT_2_like_e Subfamily 43.8 1.1E+02 0.0024 28.6 7.9 34 480-514 56-91 (229)
120 PF00670 AdoHcyase_NAD: S-aden 43.7 1.4E+02 0.003 29.2 8.6 86 449-546 17-112 (162)
121 cd04187 DPM1_like_bac Bacteria 43.7 93 0.002 28.5 7.2 7 507-513 82-88 (181)
122 COG0800 Eda 2-keto-3-deoxy-6-p 43.5 1.3E+02 0.0027 30.8 8.5 80 478-559 13-109 (211)
123 PRK12767 carbamoyl phosphate s 43.4 31 0.00068 35.4 4.4 41 457-498 3-43 (326)
124 PRK03369 murD UDP-N-acetylmura 43.2 1.3E+02 0.0029 33.4 9.6 89 452-559 9-97 (488)
125 TIGR01470 cysG_Nterm siroheme 43.0 1.6E+02 0.0034 29.3 9.0 90 454-559 8-97 (205)
126 PRK07568 aspartate aminotransf 43.0 1.7E+02 0.0038 30.7 10.0 100 452-558 86-197 (397)
127 PRK01747 mnmC bifunctional tRN 42.9 72 0.0016 36.8 7.6 35 440-474 184-218 (662)
128 PRK13520 L-tyrosine decarboxyl 42.8 3.1E+02 0.0068 28.3 11.7 99 454-559 76-184 (371)
129 PRK08056 threonine-phosphate d 42.8 1.9E+02 0.0041 30.2 10.2 98 452-558 70-177 (356)
130 COG1104 NifS Cysteine sulfinat 42.4 88 0.0019 34.5 7.7 110 439-559 48-174 (386)
131 cd01987 USP_OKCHK USP domain i 42.4 2.2E+02 0.0048 24.5 9.5 75 459-533 4-96 (124)
132 KOG3349 Predicted glycosyltran 42.2 39 0.00085 33.1 4.4 53 450-506 76-128 (170)
133 TIGR03499 FlhF flagellar biosy 42.1 4.1E+02 0.009 27.5 15.0 77 452-528 191-278 (282)
134 PRK13937 phosphoheptose isomer 42.0 3.3E+02 0.0072 26.3 12.3 37 493-529 121-157 (188)
135 smart00851 MGS MGS-like domain 41.9 1.8E+02 0.0038 24.6 8.1 76 470-559 5-88 (90)
136 PF02844 GARS_N: Phosphoribosy 41.7 51 0.0011 29.7 4.9 82 457-559 2-89 (100)
137 cd00287 ribokinase_pfkB_like r 41.3 60 0.0013 30.1 5.6 64 479-559 24-87 (196)
138 cd05212 NAD_bind_m-THF_DH_Cycl 41.2 1.2E+02 0.0025 28.7 7.4 35 454-489 27-61 (140)
139 PLN02187 rooty/superroot1 41.2 2.1E+02 0.0046 31.6 10.6 101 452-559 129-240 (462)
140 PRK13479 2-aminoethylphosphona 41.1 3E+02 0.0065 28.6 11.3 97 456-559 57-164 (368)
141 PRK09496 trkA potassium transp 41.1 77 0.0017 34.2 7.1 62 449-512 199-261 (453)
142 TIGR03458 YgfH_subfam succinat 40.9 1.4E+02 0.003 33.9 9.2 100 446-545 6-139 (485)
143 PRK06141 ornithine cyclodeamin 40.7 2.3E+02 0.0049 29.8 10.3 90 454-546 124-221 (314)
144 cd00138 PLDc Phospholipase D. 40.5 2E+02 0.0044 26.4 9.0 73 464-536 52-136 (176)
145 TIGR00639 PurN phosphoribosylg 40.4 1.5E+02 0.0032 29.2 8.4 75 457-534 4-92 (190)
146 PRK05414 urocanate hydratase; 40.3 1.9E+02 0.0042 33.3 10.0 115 372-490 214-370 (556)
147 PRK10063 putative glycosyl tra 40.3 1.2E+02 0.0026 30.5 8.0 9 524-532 112-120 (248)
148 PRK08618 ornithine cyclodeamin 40.2 1.8E+02 0.004 30.6 9.6 89 454-546 126-223 (325)
149 PRK05647 purN phosphoribosylgl 40.2 1.1E+02 0.0024 30.3 7.5 76 457-535 5-94 (200)
150 PLN02828 formyltetrahydrofolat 40.1 1E+02 0.0023 32.2 7.6 72 457-529 74-154 (268)
151 PRK05968 hypothetical protein; 39.8 3E+02 0.0065 29.6 11.3 96 456-559 80-180 (389)
152 PRK13789 phosphoribosylamine-- 39.3 53 0.0012 36.1 5.6 77 456-537 5-83 (426)
153 PF08032 SpoU_sub_bind: RNA 2' 39.3 84 0.0018 25.3 5.5 53 469-521 6-59 (76)
154 PLN00145 tyrosine/nicotianamin 39.2 1.9E+02 0.004 31.6 9.7 101 452-559 115-226 (430)
155 TIGR00441 gmhA phosphoheptose 38.9 83 0.0018 29.4 6.1 33 446-478 71-106 (154)
156 PF04016 DUF364: Domain of unk 38.8 32 0.0007 32.5 3.3 70 452-538 8-77 (147)
157 PRK02705 murD UDP-N-acetylmura 38.6 1.7E+02 0.0037 31.8 9.3 90 458-559 3-95 (459)
158 TIGR03539 DapC_actino succinyl 38.5 1.5E+02 0.0032 31.0 8.6 91 452-558 78-177 (357)
159 cd04179 DPM_DPG-synthase_like 38.5 1E+02 0.0022 28.0 6.5 24 468-491 43-66 (185)
160 COG1064 AdhP Zn-dependent alco 38.2 65 0.0014 34.9 5.9 75 411-501 135-209 (339)
161 KOG1549 Cysteine desulfurase N 38.1 4.7E+02 0.01 29.5 12.5 116 437-559 87-214 (428)
162 PRK09295 bifunctional cysteine 37.7 3.7E+02 0.0081 28.6 11.6 99 455-559 86-197 (406)
163 cd06454 KBL_like KBL_like; thi 37.4 2.2E+02 0.0048 29.0 9.5 99 451-559 58-165 (349)
164 cd01989 STK_N The N-terminal d 37.3 2.6E+02 0.0057 24.8 8.9 33 501-533 74-114 (146)
165 PTZ00182 3-methyl-2-oxobutanat 37.3 1.4E+02 0.003 32.3 8.3 24 451-474 229-252 (355)
166 TIGR03576 pyridox_MJ0158 pyrid 37.3 5.3E+02 0.012 27.4 14.2 131 418-559 35-171 (346)
167 PRK11892 pyruvate dehydrogenas 37.3 97 0.0021 34.8 7.3 53 497-554 358-418 (464)
168 PRK11543 gutQ D-arabinose 5-ph 37.2 4.9E+02 0.011 26.9 12.3 38 492-529 103-140 (321)
169 PRK07178 pyruvate carboxylase 37.2 71 0.0015 35.4 6.2 79 456-536 3-87 (472)
170 PRK05784 phosphoribosylamine-- 36.9 34 0.00073 38.5 3.7 77 457-534 2-81 (486)
171 TIGR00853 pts-lac PTS system, 36.9 1.4E+02 0.003 26.2 6.8 35 499-533 25-61 (95)
172 PLN02778 3,5-epimerase/4-reduc 36.7 1.1E+02 0.0024 31.5 7.2 19 540-558 86-104 (298)
173 PRK07683 aminotransferase A; V 36.6 2.7E+02 0.006 29.5 10.3 97 456-558 91-196 (387)
174 TIGR01325 O_suc_HS_sulf O-succ 36.6 3E+02 0.0066 29.4 10.7 96 456-559 71-172 (380)
175 COG3844 Kynureninase [Amino ac 36.5 6.3E+02 0.014 28.0 13.0 112 442-556 79-196 (407)
176 PRK12454 carbamate kinase-like 36.5 1.2E+02 0.0026 32.5 7.5 68 443-511 32-110 (313)
177 PRK13936 phosphoheptose isomer 36.3 4.2E+02 0.0091 25.9 14.5 37 494-530 127-166 (197)
178 PF01175 Urocanase: Urocanase; 36.2 1.3E+02 0.0028 34.5 7.9 116 372-491 204-361 (546)
179 PRK07340 ornithine cyclodeamin 35.9 2.4E+02 0.0052 29.6 9.5 97 446-546 114-219 (304)
180 COG0279 GmhA Phosphoheptose is 35.8 4.6E+02 0.0099 26.2 12.5 68 449-526 104-174 (176)
181 PF00266 Aminotran_5: Aminotra 35.8 2.5E+02 0.0054 29.4 9.8 111 440-558 48-171 (371)
182 COG2014 Uncharacterized conser 35.8 61 0.0013 33.4 4.9 73 449-538 107-179 (250)
183 TIGR02429 pcaI_scoA_fam 3-oxoa 35.7 2.6E+02 0.0055 28.5 9.4 41 447-487 11-54 (222)
184 PF05368 NmrA: NmrA-like famil 35.7 1.4E+02 0.0029 29.1 7.3 93 458-558 1-96 (233)
185 PRK07324 transaminase; Validat 35.6 1.8E+02 0.004 30.7 8.8 100 452-558 78-188 (373)
186 TIGR01228 hutU urocanate hydra 35.3 2.3E+02 0.005 32.5 9.6 89 372-464 205-317 (545)
187 PRK09028 cystathionine beta-ly 35.2 2.5E+02 0.0054 30.7 9.9 92 456-559 78-179 (394)
188 PRK08248 O-acetylhomoserine am 35.2 2.9E+02 0.0064 30.4 10.5 96 456-559 81-182 (431)
189 TIGR02356 adenyl_thiF thiazole 35.1 2.6E+02 0.0055 27.5 9.1 105 444-559 11-139 (202)
190 PRK08462 biotin carboxylase; V 35.0 58 0.0013 35.5 5.0 80 456-537 5-91 (445)
191 TIGR01469 cobA_cysG_Cterm urop 34.9 3.7E+02 0.008 26.4 10.3 64 467-531 66-143 (236)
192 COG0608 RecJ Single-stranded D 34.7 1.6E+02 0.0034 33.0 8.5 85 442-531 23-122 (491)
193 PLN02331 phosphoribosylglycina 34.6 1.8E+02 0.0038 29.3 8.0 73 458-534 4-91 (207)
194 cd01973 Nitrogenase_VFe_beta_l 34.6 6.9E+02 0.015 27.9 14.6 111 394-518 258-370 (454)
195 PF14468 DUF4427: Protein of u 34.6 1.8E+02 0.0039 27.5 7.3 58 455-512 37-106 (132)
196 TIGR03469 HonB hopene-associat 34.6 1.3E+02 0.0029 32.1 7.6 7 507-513 135-141 (384)
197 TIGR03538 DapC_gpp succinyldia 34.3 2.6E+02 0.0056 29.6 9.7 102 452-558 87-200 (393)
198 TIGR01521 FruBisAldo_II_B fruc 34.3 1.1E+02 0.0024 33.3 6.9 94 463-559 25-137 (347)
199 PRK06836 aspartate aminotransf 34.2 2.9E+02 0.0063 29.4 10.0 96 452-554 94-199 (394)
200 TIGR01977 am_tr_V_EF2568 cyste 34.1 5.5E+02 0.012 26.6 12.7 97 456-559 64-170 (376)
201 PRK12771 putative glutamate sy 33.9 3.2E+02 0.007 30.9 10.8 79 452-532 134-232 (564)
202 PRK08063 enoyl-(acyl carrier p 33.9 1.9E+02 0.0041 27.9 8.0 55 455-511 4-59 (250)
203 cd00079 HELICc Helicase superf 33.8 3E+02 0.0064 23.4 9.4 76 451-528 24-102 (131)
204 PRK08960 hypothetical protein; 33.8 2.9E+02 0.0063 29.2 9.9 55 452-512 90-144 (387)
205 PRK07812 O-acetylhomoserine am 33.7 2.6E+02 0.0056 31.0 9.8 13 547-559 176-188 (436)
206 PRK08045 cystathionine gamma-s 33.7 3.2E+02 0.0069 29.5 10.4 96 456-559 69-170 (386)
207 TIGR03705 poly_P_kin polyphosp 33.7 90 0.002 36.8 6.5 51 462-512 368-420 (672)
208 TIGR01326 OAH_OAS_sulfhy OAH/O 33.6 3.4E+02 0.0073 29.6 10.6 95 456-559 74-175 (418)
209 TIGR00762 DegV EDD domain prot 33.5 50 0.0011 33.9 4.0 57 450-507 73-137 (275)
210 PRK07865 N-succinyldiaminopime 33.3 1.9E+02 0.004 30.3 8.3 91 452-558 84-183 (364)
211 cd06453 SufS_like Cysteine des 33.2 4.6E+02 0.01 27.2 11.2 98 456-559 63-172 (373)
212 cd00614 CGS_like CGS_like: Cys 33.1 3.5E+02 0.0076 28.7 10.4 95 456-559 57-158 (369)
213 PRK07050 cystathionine beta-ly 32.9 3.9E+02 0.0084 29.0 10.9 14 546-559 170-183 (394)
214 cd05710 SIS_1 A subgroup of th 32.8 75 0.0016 28.4 4.6 29 450-478 43-74 (120)
215 PF02550 AcetylCoA_hydro: Acet 32.8 1.7E+02 0.0037 28.6 7.4 99 445-544 12-146 (198)
216 cd06420 GT2_Chondriotin_Pol_N 32.8 1.7E+02 0.0036 26.5 7.0 6 482-487 28-33 (182)
217 PRK10310 PTS system galactitol 32.8 1.8E+02 0.0039 25.3 6.9 55 457-532 4-60 (94)
218 PLN02260 probable rhamnose bio 32.7 1.2E+02 0.0027 34.8 7.4 79 479-558 379-475 (668)
219 PRK07309 aromatic amino acid a 32.6 2.1E+02 0.0045 30.5 8.6 99 454-559 91-202 (391)
220 PRK09196 fructose-1,6-bisphosp 32.5 1.2E+02 0.0026 33.0 6.8 94 463-559 27-139 (347)
221 TIGR03537 DapC succinyldiamino 32.3 2.6E+02 0.0057 29.0 9.2 58 452-513 57-116 (350)
222 cd01972 Nitrogenase_VnfE_like 32.3 7E+02 0.015 27.3 13.3 98 430-529 270-380 (426)
223 PRK05749 3-deoxy-D-manno-octul 32.1 2.3E+02 0.0051 30.2 9.0 73 454-528 49-130 (425)
224 TIGR03217 4OH_2_O_val_ald 4-hy 32.0 2.1E+02 0.0046 30.6 8.6 58 458-515 106-166 (333)
225 cd06450 DOPA_deC_like DOPA dec 31.9 5.3E+02 0.011 26.3 11.2 98 455-559 58-181 (345)
226 PF02302 PTS_IIB: PTS system, 31.9 1.4E+02 0.003 24.8 5.8 35 499-533 22-58 (90)
227 TIGR01328 met_gam_lyase methio 31.8 3.6E+02 0.0079 29.1 10.4 95 457-559 77-177 (391)
228 PRK09135 pteridine reductase; 31.7 1E+02 0.0022 29.6 5.6 76 454-531 5-94 (249)
229 PF08349 DUF1722: Protein of u 31.4 3.3E+02 0.0071 24.6 8.5 77 353-437 10-86 (117)
230 TIGR01139 cysK cysteine syntha 31.4 71 0.0015 32.9 4.8 58 452-513 54-111 (298)
231 cd06439 CESA_like_1 CESA_like_ 31.4 1.6E+02 0.0034 28.5 6.9 45 458-502 35-82 (251)
232 PRK00414 gmhA phosphoheptose i 31.3 5.1E+02 0.011 25.3 13.3 43 487-529 120-162 (192)
233 PRK02472 murD UDP-N-acetylmura 31.2 3E+02 0.0064 29.8 9.7 90 455-559 5-95 (447)
234 PRK07589 ornithine cyclodeamin 31.2 3.9E+02 0.0084 29.0 10.4 100 445-547 117-228 (346)
235 PRK05957 aspartate aminotransf 31.2 3.2E+02 0.007 29.0 9.8 92 454-559 89-196 (389)
236 PRK14571 D-alanyl-alanine synt 31.1 1.2E+02 0.0025 31.2 6.2 59 493-559 20-82 (299)
237 cd05564 PTS_IIB_chitobiose_lic 31.1 1.6E+02 0.0034 25.8 6.2 34 499-532 21-56 (96)
238 PRK13399 fructose-1,6-bisphosp 30.9 1.3E+02 0.0028 32.8 6.7 94 463-559 27-139 (347)
239 PRK07792 fabG 3-ketoacyl-(acyl 30.9 2.3E+02 0.005 29.0 8.4 75 454-530 11-97 (306)
240 cd01065 NAD_bind_Shikimate_DH 30.7 2.1E+02 0.0046 25.8 7.3 71 454-529 18-88 (155)
241 PRK07681 aspartate aminotransf 30.7 3.1E+02 0.0066 29.2 9.5 100 452-558 90-201 (399)
242 TIGR01181 dTDP_gluc_dehyt dTDP 30.7 1.4E+02 0.003 29.7 6.6 98 458-555 2-114 (317)
243 PRK12320 hypothetical protein; 30.6 1.1E+02 0.0025 36.1 6.7 90 457-558 2-96 (699)
244 PRK08249 cystathionine gamma-s 30.5 2.9E+02 0.0063 30.0 9.4 96 456-559 81-182 (398)
245 cd06435 CESA_NdvC_like NdvC_li 30.4 2.3E+02 0.005 27.0 7.9 15 478-492 55-69 (236)
246 cd00609 AAT_like Aspartate ami 30.4 2.3E+02 0.005 28.3 8.2 99 454-559 59-168 (350)
247 PRK09331 Sep-tRNA:Cys-tRNA syn 30.3 3.5E+02 0.0075 28.8 9.9 13 547-559 179-191 (387)
248 PRK07550 hypothetical protein; 30.3 2.9E+02 0.0062 29.2 9.2 101 452-559 88-199 (386)
249 PRK12809 putative oxidoreducta 30.3 1.4E+02 0.0031 34.4 7.4 77 454-532 309-405 (639)
250 PRK06091 membrane protein FdrA 30.3 3.2E+02 0.007 31.7 9.9 133 419-557 75-218 (555)
251 PRK12743 oxidoreductase; Provi 30.2 1.7E+02 0.0038 28.6 7.1 75 455-531 2-89 (256)
252 PRK15116 sulfur acceptor prote 30.2 4.5E+02 0.0097 27.5 10.3 106 443-559 19-149 (268)
253 PRK03803 murD UDP-N-acetylmura 30.1 3.2E+02 0.0069 29.8 9.7 91 452-559 3-95 (448)
254 PRK09288 purT phosphoribosylgl 30.1 1.1E+02 0.0023 32.5 6.0 72 456-533 13-86 (395)
255 cd00761 Glyco_tranf_GTA_type G 30.0 2.6E+02 0.0056 23.3 7.3 45 458-502 3-48 (156)
256 PRK12769 putative oxidoreducta 30.0 1.2E+02 0.0026 35.0 6.7 77 453-531 325-421 (654)
257 PRK13011 formyltetrahydrofolat 29.9 1.4E+02 0.0031 31.3 6.7 68 456-529 92-172 (286)
258 PRK09147 succinyldiaminopimela 29.9 3.1E+02 0.0066 29.1 9.3 98 456-558 92-201 (396)
259 cd01483 E1_enzyme_family Super 29.9 2.9E+02 0.0062 25.1 8.0 92 458-559 2-117 (143)
260 PRK06225 aspartate aminotransf 29.9 3.2E+02 0.007 28.7 9.5 55 452-512 81-135 (380)
261 PRK09411 carbamate kinase; Rev 29.9 2.2E+02 0.0049 30.4 8.1 61 447-508 35-99 (297)
262 PRK07503 methionine gamma-lyas 29.8 3.6E+02 0.0077 29.3 10.0 95 457-559 83-183 (403)
263 TIGR01264 tyr_amTase_E tyrosin 29.8 3E+02 0.0066 29.2 9.3 55 452-512 93-147 (401)
264 PRK08591 acetyl-CoA carboxylas 29.8 1.2E+02 0.0026 33.0 6.4 80 456-537 3-89 (451)
265 PRK07523 gluconate 5-dehydroge 29.6 1.8E+02 0.0039 28.4 7.1 74 454-530 9-95 (255)
266 PLN02214 cinnamoyl-CoA reducta 29.3 3.4E+02 0.0073 28.4 9.4 102 454-557 9-119 (342)
267 PRK06084 O-acetylhomoserine am 29.2 2.9E+02 0.0062 30.4 9.2 95 457-559 76-176 (425)
268 PRK06015 keto-hydroxyglutarate 29.1 1.6E+02 0.0035 29.5 6.6 75 485-559 9-100 (201)
269 PF04198 Sugar-bind: Putative 29.0 2.3E+02 0.005 29.0 7.9 92 443-535 41-157 (255)
270 PRK08762 molybdopterin biosynt 28.8 5.3E+02 0.012 27.8 11.0 105 444-559 125-253 (376)
271 PRK15181 Vi polysaccharide bio 28.6 1.8E+02 0.0039 30.4 7.2 102 454-557 14-133 (348)
272 PRK12727 flagellar biosynthesi 28.5 1E+03 0.022 27.9 14.8 81 450-530 345-436 (559)
273 PF01380 SIS: SIS domain SIS d 28.5 1.2E+02 0.0027 26.3 5.2 39 492-530 67-105 (131)
274 PRK08328 hypothetical protein; 28.5 4.6E+02 0.0099 26.4 9.8 105 444-559 17-146 (231)
275 PRK06108 aspartate aminotransf 28.4 3.7E+02 0.0081 28.0 9.6 56 452-513 82-137 (382)
276 PRK06835 DNA replication prote 28.4 2.5E+02 0.0054 30.1 8.3 21 453-473 181-201 (329)
277 TIGR00858 bioF 8-amino-7-oxono 28.3 6.5E+02 0.014 25.6 11.4 91 456-559 78-179 (360)
278 PF01113 DapB_N: Dihydrodipico 28.2 71 0.0015 28.9 3.6 91 457-559 2-94 (124)
279 PRK08912 hypothetical protein; 28.0 5E+02 0.011 27.4 10.5 51 456-512 89-139 (387)
280 PRK07904 short chain dehydroge 28.0 2.2E+02 0.0049 28.2 7.5 79 451-530 4-95 (253)
281 PRK14362 Maf-like protein; Pro 28.0 2.1E+02 0.0046 28.8 7.2 79 459-549 14-99 (207)
282 TIGR02822 adh_fam_2 zinc-bindi 27.9 1.2E+02 0.0026 31.5 5.7 47 451-501 162-208 (329)
283 cd07021 Clp_protease_NfeD_like 27.9 3.7E+02 0.008 26.2 8.8 81 462-542 13-99 (178)
284 PRK11263 cardiolipin synthase 27.9 2.4E+02 0.0053 31.1 8.3 47 465-512 48-95 (411)
285 cd08239 THR_DH_like L-threonin 27.8 2.5E+02 0.0054 28.7 8.0 38 452-490 161-198 (339)
286 PRK02186 argininosuccinate lya 27.8 1.7E+02 0.0037 35.3 7.7 16 543-558 80-95 (887)
287 cd00615 Orn_deC_like Ornithine 27.7 4.7E+02 0.01 26.7 10.0 90 459-559 80-186 (294)
288 PRK06207 aspartate aminotransf 27.7 4.9E+02 0.011 27.9 10.5 51 455-511 103-153 (405)
289 PRK09212 pyruvate dehydrogenas 27.6 2.4E+02 0.0052 30.0 8.0 52 451-503 197-252 (327)
290 COG0424 Maf Nucleotide-binding 27.6 1.8E+02 0.0039 29.2 6.6 78 462-550 9-91 (193)
291 KOG0822 Protein kinase inhibit 27.6 4.1E+02 0.009 31.0 10.0 79 441-519 349-434 (649)
292 cd01494 AAT_I Aspartate aminot 27.6 4.2E+02 0.0091 23.2 9.6 55 453-512 16-70 (170)
293 cd05017 SIS_PGI_PMI_1 The memb 27.5 2.7E+02 0.0059 24.6 7.3 58 451-515 40-100 (119)
294 cd03466 Nitrogenase_NifN_2 Nit 27.5 8.6E+02 0.019 26.7 13.3 60 454-513 299-358 (429)
295 PRK14852 hypothetical protein; 27.5 5E+02 0.011 32.3 11.3 125 426-559 304-452 (989)
296 PLN02918 pyridoxine (pyridoxam 27.5 1E+03 0.022 27.7 14.4 94 437-537 115-217 (544)
297 PTZ00075 Adenosylhomocysteinas 27.2 5.9E+02 0.013 29.1 11.2 84 451-546 250-343 (476)
298 cd04196 GT_2_like_d Subfamily 27.2 2.2E+02 0.0047 26.3 6.9 7 481-487 28-34 (214)
299 PRK08636 aspartate aminotransf 27.1 4.1E+02 0.0089 28.3 9.8 96 456-558 97-210 (403)
300 PF00185 OTCace: Aspartate/orn 27.0 2.8E+02 0.0061 26.3 7.6 73 454-528 1-79 (158)
301 PRK02006 murD UDP-N-acetylmura 27.0 3.5E+02 0.0075 30.1 9.4 71 455-530 7-77 (498)
302 PRK01372 ddl D-alanine--D-alan 26.7 2.3E+02 0.005 28.9 7.5 39 493-531 24-65 (304)
303 PLN02166 dTDP-glucose 4,6-dehy 26.7 2.3E+02 0.0049 31.3 7.9 100 455-558 120-228 (436)
304 cd08769 DAP_dppA_2 Peptidase M 26.5 1.3E+02 0.0027 31.7 5.6 26 532-559 125-150 (270)
305 PRK10481 hypothetical protein; 26.5 3E+02 0.0064 28.2 8.1 84 470-559 121-209 (224)
306 TIGR01976 am_tr_V_VC1184 cyste 26.5 7.7E+02 0.017 25.8 14.3 74 481-559 105-189 (397)
307 PRK05967 cystathionine beta-ly 26.4 3.9E+02 0.0085 29.3 9.6 96 456-559 81-182 (395)
308 PLN00125 Succinyl-CoA ligase [ 26.4 3.8E+02 0.0082 28.6 9.1 100 456-557 71-175 (300)
309 PRK06234 methionine gamma-lyas 26.4 6E+02 0.013 27.5 10.9 95 456-558 81-183 (400)
310 cd06423 CESA_like CESA_like is 26.4 2.1E+02 0.0045 24.6 6.2 9 456-464 28-36 (180)
311 cd01980 Chlide_reductase_Y Chl 26.3 6.3E+02 0.014 27.6 11.2 73 430-508 259-333 (416)
312 COG0771 MurD UDP-N-acetylmuram 26.1 1.4E+02 0.003 33.7 6.1 69 455-528 7-75 (448)
313 PLN00203 glutamyl-tRNA reducta 26.0 2.8E+02 0.0061 31.7 8.6 72 455-530 266-337 (519)
314 PRK00421 murC UDP-N-acetylmura 26.0 3.3E+02 0.0073 29.8 9.0 87 454-559 6-93 (461)
315 PRK12452 cardiolipin synthetas 25.8 4E+02 0.0086 30.3 9.7 54 458-512 362-422 (509)
316 PF05185 PRMT5: PRMT5 arginine 25.8 3.5E+02 0.0077 30.3 9.2 71 455-527 187-263 (448)
317 cd00401 AdoHcyase S-adenosyl-L 25.7 2.5E+02 0.0053 31.3 7.9 66 451-528 198-263 (413)
318 PRK05749 3-deoxy-D-manno-octul 25.6 4.5E+02 0.0097 28.1 9.7 53 478-531 260-328 (425)
319 PF04392 ABC_sub_bind: ABC tra 25.6 53 0.0012 33.6 2.6 34 378-411 45-80 (294)
320 TIGR02463 MPGP_rel mannosyl-3- 25.4 67 0.0014 31.1 3.2 55 457-516 9-66 (221)
321 PRK08195 4-hyroxy-2-oxovalerat 25.4 3.3E+02 0.0072 29.2 8.6 50 466-515 116-167 (337)
322 PLN02735 carbamoyl-phosphate s 25.4 3.6E+02 0.0079 33.7 10.0 58 497-559 1007-1071(1102)
323 PRK07504 O-succinylhomoserine 25.4 5.2E+02 0.011 28.0 10.2 13 546-558 170-182 (398)
324 PF01135 PCMT: Protein-L-isoas 25.3 2.2E+02 0.0048 28.4 6.9 78 452-532 70-151 (209)
325 COG0451 WcaG Nucleoside-diphos 25.2 1.6E+02 0.0035 29.2 6.0 94 458-558 3-109 (314)
326 PRK05994 O-acetylhomoserine am 25.2 6E+02 0.013 27.9 10.8 95 457-559 81-181 (427)
327 PRK08861 cystathionine gamma-s 25.2 4.9E+02 0.011 28.3 10.0 96 456-559 70-171 (388)
328 PRK05600 thiamine biosynthesis 25.1 5.8E+02 0.013 27.7 10.5 106 443-559 30-159 (370)
329 PRK08361 aspartate aminotransf 25.1 4.4E+02 0.0096 27.8 9.5 55 452-512 91-145 (391)
330 cd01988 Na_H_Antiporter_C The 25.0 4.4E+02 0.0094 22.5 9.9 57 500-559 64-128 (132)
331 cd00956 Transaldolase_FSA Tran 25.0 2.4E+02 0.0052 28.2 7.1 57 463-519 59-115 (211)
332 PHA03003 palmytilated EEV memb 24.9 1.9E+02 0.0041 31.3 6.7 45 465-513 63-107 (369)
333 TIGR01182 eda Entner-Doudoroff 24.9 2E+02 0.0043 29.0 6.4 72 488-559 16-104 (204)
334 cd00611 PSAT_like Phosphoserin 24.9 5.5E+02 0.012 27.1 10.1 54 455-512 63-117 (355)
335 PRK12325 prolyl-tRNA synthetas 24.8 1.5E+02 0.0032 32.8 6.1 77 462-539 315-415 (439)
336 TIGR03472 HpnI hopanoid biosyn 24.8 2.8E+02 0.006 29.6 7.9 14 501-514 122-135 (373)
337 PRK07454 short chain dehydroge 24.8 4.6E+02 0.01 25.2 8.9 74 454-530 5-91 (241)
338 cd06427 CESA_like_2 CESA_like_ 24.7 2.7E+02 0.0058 27.1 7.3 79 456-536 34-127 (241)
339 PRK08306 dipicolinate synthase 24.5 3.5E+02 0.0077 28.3 8.5 67 454-529 151-217 (296)
340 PLN00175 aminotransferase fami 24.4 5.8E+02 0.013 27.5 10.4 96 456-558 117-222 (413)
341 COG4126 Hydantoin racemase [Am 24.4 3.9E+02 0.0084 27.7 8.3 38 456-493 71-126 (230)
342 TIGR03693 ocin_ThiF_like putat 24.2 5.5E+02 0.012 30.4 10.5 95 454-556 128-231 (637)
343 PRK08064 cystathionine beta-ly 24.1 7.2E+02 0.016 26.8 11.0 94 457-559 72-171 (390)
344 PF07139 DUF1387: Protein of u 24.1 5.4E+02 0.012 27.7 9.7 107 327-454 150-274 (302)
345 PRK05690 molybdopterin biosynt 24.1 7.7E+02 0.017 25.0 10.9 107 443-559 21-150 (245)
346 COG2057 AtoA Acyl CoA:acetate/ 24.0 99 0.0022 31.8 4.1 103 440-543 7-120 (225)
347 cd08770 DAP_dppA_3 Peptidase M 24.0 1.2E+02 0.0025 31.9 4.8 25 533-559 126-150 (263)
348 PRK14364 Maf-like protein; Pro 23.8 2.7E+02 0.0059 27.4 7.0 69 469-549 10-83 (181)
349 PF01118 Semialdhyde_dh: Semia 23.8 1.4E+02 0.003 26.6 4.7 75 457-531 1-75 (121)
350 PRK00377 cbiT cobalt-precorrin 23.8 5.3E+02 0.011 24.8 9.0 77 451-530 37-119 (198)
351 PRK07878 molybdopterin biosynt 23.7 5.7E+02 0.012 27.9 10.1 106 443-559 31-160 (392)
352 PRK15473 cbiF cobalt-precorrin 23.7 2.1E+02 0.0045 29.2 6.4 51 470-521 72-125 (257)
353 PRK06136 uroporphyrin-III C-me 23.6 3.4E+02 0.0073 27.0 7.9 45 476-521 78-125 (249)
354 cd06578 HemD Uroporphyrinogen- 23.6 2.7E+02 0.0058 26.6 6.9 51 458-515 176-230 (239)
355 COG2242 CobL Precorrin-6B meth 23.6 5E+02 0.011 26.1 8.8 75 451-530 31-110 (187)
356 cd06434 GT2_HAS Hyaluronan syn 23.5 4E+02 0.0087 25.2 8.1 15 523-537 105-119 (235)
357 PRK10886 DnaA initiator-associ 23.5 7.4E+02 0.016 24.6 13.2 33 496-528 127-162 (196)
358 PRK09148 aminotransferase; Val 23.4 4.3E+02 0.0094 28.3 9.1 100 452-558 89-200 (405)
359 PRK15418 transcriptional regul 23.3 6.7E+02 0.015 26.6 10.4 90 443-535 104-214 (318)
360 PRK04308 murD UDP-N-acetylmura 23.2 5.2E+02 0.011 28.1 9.8 88 455-559 5-94 (445)
361 PLN02586 probable cinnamyl alc 23.1 3.8E+02 0.0082 28.2 8.5 38 451-490 180-217 (360)
362 PF02882 THF_DHG_CYH_C: Tetrah 23.0 3.6E+02 0.0079 26.0 7.6 35 454-489 35-69 (160)
363 PRK08363 alanine aminotransfer 23.0 3.4E+02 0.0075 28.7 8.2 41 452-496 91-131 (398)
364 PRK09257 aromatic amino acid a 22.9 7.8E+02 0.017 26.1 10.9 95 458-558 98-207 (396)
365 cd00923 Cyt_c_Oxidase_Va Cytoc 22.9 3.3E+02 0.0071 25.0 6.7 43 319-361 12-55 (103)
366 PRK08557 hypothetical protein; 22.8 1E+03 0.022 26.6 11.9 69 443-513 168-242 (417)
367 TIGR02080 O_succ_thio_ly O-suc 22.7 5.6E+02 0.012 27.6 9.8 95 456-558 68-168 (382)
368 PRK05557 fabG 3-ketoacyl-(acyl 22.7 5.8E+02 0.013 24.1 9.0 75 455-531 5-92 (248)
369 PF00590 TP_methylase: Tetrapy 22.7 2.9E+02 0.0063 26.3 7.0 47 474-521 72-123 (210)
370 PRK06348 aspartate aminotransf 22.6 4.8E+02 0.01 27.6 9.2 100 452-558 87-197 (384)
371 PTZ00357 methyltransferase; Pr 22.6 8.2E+02 0.018 29.9 11.3 63 457-519 703-776 (1072)
372 PRK04694 Maf-like protein; Rev 22.6 3E+02 0.0066 27.2 7.1 81 459-549 2-90 (190)
373 cd05014 SIS_Kpsf KpsF-like pro 22.5 1.7E+02 0.0036 25.7 4.9 43 488-530 57-99 (128)
374 TIGR01465 cobM_cbiF precorrin- 22.5 2.7E+02 0.0058 27.4 6.8 52 469-521 62-116 (229)
375 PRK12452 cardiolipin synthetas 22.5 3.5E+02 0.0076 30.7 8.5 48 465-512 180-227 (509)
376 PRK00648 Maf-like protein; Rev 22.5 3.4E+02 0.0074 26.8 7.5 79 460-549 6-91 (191)
377 COG1091 RfbD dTDP-4-dehydrorha 22.5 1.8E+02 0.0038 30.9 5.7 91 458-559 3-95 (281)
378 TIGR01324 cysta_beta_ly_B cyst 22.4 6.2E+02 0.014 27.3 10.1 91 456-558 67-167 (377)
379 PRK12361 hypothetical protein; 22.4 3.7E+02 0.0081 30.4 8.7 43 455-502 298-340 (547)
380 cd01080 NAD_bind_m-THF_DH_Cycl 22.3 2.9E+02 0.0062 26.8 6.8 34 454-489 43-77 (168)
381 TIGR01133 murG undecaprenyldip 22.2 6E+02 0.013 25.8 9.5 70 455-528 179-256 (348)
382 cd01078 NAD_bind_H4MPT_DH NADP 22.2 6.9E+02 0.015 23.8 9.6 72 454-528 27-103 (194)
383 PRK08175 aminotransferase; Val 22.1 5.9E+02 0.013 27.0 9.8 100 452-558 88-199 (395)
384 COG0707 MurG UDP-N-acetylgluco 22.1 5.1E+02 0.011 28.1 9.3 83 454-552 182-269 (357)
385 KOG1430 C-3 sterol dehydrogena 22.1 4.7E+02 0.01 28.7 9.0 102 455-559 4-120 (361)
386 PRK05765 precorrin-3B C17-meth 21.9 3.4E+02 0.0075 27.5 7.6 58 473-531 67-135 (246)
387 cd05188 MDR Medium chain reduc 21.9 2.3E+02 0.005 27.1 6.1 38 451-490 131-168 (271)
388 PRK04296 thymidine kinase; Pro 21.8 3E+02 0.0064 26.6 6.8 49 479-527 77-137 (190)
389 KOG1198 Zinc-binding oxidoredu 21.7 1.3E+02 0.0029 32.3 4.8 49 450-502 153-202 (347)
390 PRK08247 cystathionine gamma-s 21.7 8.1E+02 0.018 26.0 10.7 93 458-559 71-169 (366)
391 PRK00141 murD UDP-N-acetylmura 21.7 5.2E+02 0.011 28.7 9.6 88 454-559 14-101 (473)
392 cd01491 Ube1_repeat1 Ubiquitin 21.7 4.7E+02 0.01 27.6 8.7 105 444-559 9-133 (286)
393 PF00070 Pyr_redox: Pyridine n 21.7 4.4E+02 0.0096 21.4 7.4 52 458-509 2-58 (80)
394 PRK14367 Maf-like protein; Pro 21.7 3.3E+02 0.0071 27.3 7.2 80 460-549 5-95 (202)
395 PRK05476 S-adenosyl-L-homocyst 21.6 3.8E+02 0.0083 29.9 8.4 67 451-529 208-274 (425)
396 COG1307 DegV Uncharacterized p 21.6 3.6E+02 0.0078 28.3 7.8 70 451-522 76-154 (282)
397 PRK00032 Maf-like protein; Rev 21.6 3.4E+02 0.0075 26.9 7.3 79 460-549 5-89 (190)
398 PRK13795 hypothetical protein; 21.5 1E+03 0.022 27.9 12.2 69 440-513 231-304 (636)
399 PRK06111 acetyl-CoA carboxylas 21.5 1.3E+02 0.0028 32.7 4.7 34 456-491 3-36 (450)
400 TIGR02764 spore_ybaN_pdaB poly 21.5 1.8E+02 0.004 27.7 5.3 39 443-481 140-184 (191)
401 PRK04690 murD UDP-N-acetylmura 21.4 4.9E+02 0.011 28.9 9.3 89 455-559 8-96 (468)
402 COG2390 DeoR Transcriptional r 21.4 6.2E+02 0.013 27.3 9.6 94 444-538 104-223 (321)
403 PF05690 ThiG: Thiazole biosyn 21.4 48 0.001 34.4 1.3 84 449-538 117-206 (247)
404 PRK12939 short chain dehydroge 21.4 3.5E+02 0.0077 25.9 7.3 74 455-531 7-93 (250)
405 PF00148 Oxidored_nitro: Nitro 21.4 1E+03 0.022 25.4 13.5 48 440-489 258-305 (398)
406 PRK12935 acetoacetyl-CoA reduc 21.4 5.7E+02 0.012 24.6 8.8 76 455-532 6-94 (247)
407 PRK10537 voltage-gated potassi 21.3 1.1E+03 0.024 25.9 12.9 83 455-556 240-327 (393)
408 PRK14188 bifunctional 5,10-met 21.3 3.5E+02 0.0076 28.7 7.7 59 488-546 165-232 (296)
409 PRK02090 phosphoadenosine phos 21.2 5.7E+02 0.012 25.8 9.0 66 443-512 30-100 (241)
410 PRK10717 cysteine synthase A; 21.1 1.3E+02 0.0027 31.7 4.4 72 465-537 46-118 (330)
411 cd04235 AAK_CK AAK_CK: Carbama 21.1 2.5E+02 0.0053 30.1 6.6 66 442-508 28-103 (308)
412 PRK07682 hypothetical protein; 21.0 7.4E+02 0.016 25.9 10.2 52 455-512 82-133 (378)
413 PF09664 DUF2399: Protein of u 20.9 1.8E+02 0.004 27.8 5.1 55 457-513 20-74 (152)
414 TIGR00450 mnmE_trmE_thdF tRNA 20.9 9.3E+02 0.02 26.8 11.2 27 335-361 66-92 (442)
415 PRK12342 hypothetical protein; 20.8 4.6E+02 0.0099 27.3 8.3 84 456-559 54-139 (254)
416 COG1412 Uncharacterized protei 20.8 4.8E+02 0.01 24.8 7.7 56 444-512 69-124 (136)
417 PRK04663 murD UDP-N-acetylmura 20.8 5E+02 0.011 28.3 9.1 88 456-559 8-95 (438)
418 PRK06552 keto-hydroxyglutarate 20.8 3.4E+02 0.0074 27.3 7.2 72 488-559 21-112 (213)
419 PF07046 CRA_rpt: Cytoplasmic 20.7 97 0.0021 23.8 2.5 26 192-217 4-29 (42)
420 cd07943 DRE_TIM_HOA 4-hydroxy- 20.7 3.1E+02 0.0067 27.9 7.0 48 466-513 113-162 (263)
421 cd05284 arabinose_DH_like D-ar 20.7 4.8E+02 0.01 26.5 8.4 39 451-490 164-202 (340)
422 PRK09195 gatY tagatose-bisphos 20.6 2.9E+02 0.0062 29.2 6.9 94 463-559 27-131 (284)
423 KOG0387 Transcription-coupled 20.6 3.9E+02 0.0084 32.6 8.4 87 442-528 533-623 (923)
424 PRK12655 fructose-6-phosphate 20.6 3E+02 0.0066 27.9 6.8 71 464-537 62-139 (220)
425 PRK14368 Maf-like protein; Pro 20.6 3.6E+02 0.0079 26.8 7.2 79 459-549 7-91 (193)
426 PF02441 Flavoprotein: Flavopr 20.5 1.6E+02 0.0035 26.6 4.4 39 482-520 4-42 (129)
427 cd02522 GT_2_like_a GT_2_like_ 20.5 2.8E+02 0.006 26.0 6.2 9 481-489 29-37 (221)
428 PRK14361 Maf-like protein; Pro 20.5 3.4E+02 0.0073 26.9 7.0 77 461-549 3-84 (187)
429 PRK00048 dihydrodipicolinate r 20.4 3.2E+02 0.007 27.8 7.1 84 457-559 3-87 (257)
430 PRK07688 thiamine/molybdopteri 20.4 9.8E+02 0.021 25.6 11.0 106 443-559 13-144 (339)
431 PRK08329 threonine synthase; V 20.3 1.5E+02 0.0033 31.5 4.9 53 456-512 105-157 (347)
432 TIGR02825 B4_12hDH leukotriene 20.3 3.5E+02 0.0077 27.5 7.4 38 451-490 135-173 (325)
433 cd06437 CESA_CaSu_A2 Cellulose 20.3 2.9E+02 0.0063 26.5 6.5 34 481-514 63-96 (232)
434 PRK05269 transaldolase B; Prov 20.3 1.1E+03 0.023 25.4 11.2 30 492-521 137-166 (318)
435 PRK12414 putative aminotransfe 20.3 4.7E+02 0.01 27.7 8.5 52 455-512 91-142 (384)
436 PF01451 LMWPc: Low molecular 20.3 1.7E+02 0.0036 26.4 4.5 69 462-530 10-84 (138)
437 TIGR02992 ectoine_eutC ectoine 20.2 5.3E+02 0.011 27.3 8.8 88 454-545 128-225 (326)
438 PRK07206 hypothetical protein; 20.2 3.6E+02 0.0079 28.8 7.8 32 458-491 5-36 (416)
439 TIGR03590 PseG pseudaminic aci 20.2 5.3E+02 0.011 26.4 8.6 71 456-529 172-248 (279)
440 TIGR01205 D_ala_D_alaTIGR D-al 20.1 1.8E+02 0.004 29.7 5.3 22 467-490 20-41 (315)
441 PF03847 TFIID_20kDa: Transcri 20.1 4.2E+02 0.0092 22.2 6.4 43 404-447 4-47 (68)
442 PF00070 Pyr_redox: Pyridine n 20.1 1.7E+02 0.0038 23.8 4.2 29 483-513 2-30 (80)
443 PRK00078 Maf-like protein; Rev 20.1 3.7E+02 0.0081 26.6 7.2 79 461-549 5-90 (192)
No 1
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-86 Score=699.69 Aligned_cols=456 Identities=49% Similarity=0.727 Sum_probs=360.5
Q ss_pred CCCCCCCCCCC-CCCCCCCcCcccCCCC-CCCCCCCCCCC---CCCCCCCCCCCCCCccccccCCCCCCcccCCCCCCcc
Q 008627 37 DPIHSTPLADA-SSPGNFLSPVMIPPPR-HPSSSLLPRLP---HSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSA 111 (559)
Q Consensus 37 ~~~~~~~~~~~-~~~~~~~~~v~~p~~r-~~s~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (559)
|.++.+...+. ++.+|+++|+|||++| |.+|++..++- +.......+..++ +.+. ++...++.+.
T Consensus 3 d~~~tt~e~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~kk~~k~~~~ep~~~~--------~~~~--~p~~~t~s~~ 72 (556)
T KOG1467|consen 3 DKNSTTDELSPIDKLKELPEPANNPVARLGTIDQVKSERNAKKVAKQAAKEPAQGE--------DKNA--EPKDLTASAK 72 (556)
T ss_pred cccccccccCccchhhhccccccCccccccchHHHHHHHHHhhcCccccccccCCC--------cccc--Cccccccccc
Confidence 43444555555 5999999999999999 88888887761 1111111111000 1111 1222221111
Q ss_pred ccccceecccCCcccccccccCCCCCCcCCCCCcCCCCCCCCCCCeeeeeecCCCCccccCCCccceeecccccCCCCcc
Q 008627 112 AAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPL 191 (559)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (559)
+-. ..+..|+|+||||+|...+. . .+.++..+......+.++..
T Consensus 73 ----~~~---------~~~~~s~~~~~~e~t~a~~a----------------------~-~~a~~s~~~~p~~~~~~ka~ 116 (556)
T KOG1467|consen 73 ----QAR---------VAVKASLPKGGAELTVANKA----------------------A-AAAGSSATQSPKKEKPPKAG 116 (556)
T ss_pred ----ccc---------cchhhcccCCcceecccccc----------------------h-hhhccccccCCcccCCcccc
Confidence 111 55688999999999977211 0 11112223333334556777
Q ss_pred cccccHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhccCCCCCCCCCCC-CCCCCccchhccccCCCCCccccccCCCCC
Q 008627 192 KEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSP-QRNDSPVVVAASEKKGGDRSVEKDRKKDVP 270 (559)
Q Consensus 192 ~~~~~kAERRa~Qeaqraakaa~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 270 (559)
+.+.++||||+.||++||+|+++|+++...........+.+..+...|. .|+..+..+ +..- +- .+.+++
T Consensus 117 ~~~~t~a~~~a~~Ea~~a~K~a~kg~~~~~a~~~~~~kA~~s~a~~~P~~~k~~~p~~t------~~~~-~~--~~~~~~ 187 (556)
T KOG1467|consen 117 LAVPTRAERKAIQEAKRAAKTAEKGEGARKAQVIERAKANASTAPAIPAVKKNALPVTT------SVDQ-AL--KRRAVQ 187 (556)
T ss_pred cccccHHHHhhHHHHHHHHHHhhhcccccccccccccccCcccccCCCccccccccccc------cccc-hH--Hhhccc
Confidence 8889999999999999999999999976421111111111111221222 222211111 1110 11 567889
Q ss_pred CCCccccchHHHHhhhhccccCccccccccccccCCCCCccCCCcchhhhccCCCCCchHHHHHHHhhhcCCcccChHHH
Q 008627 271 HPRMQYDDKSRVQKLKKRSVVKPTEARNRVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNAR 350 (559)
Q Consensus 271 ~p~~q~d~~~r~~k~~~~~vv~~~~~~~~v~lF~HL~~~~~~~~l~~l~~~~~~~~~VHPaVl~Lglq~~~~~I~GSnAr 350 (559)
+|.+|+|+..+.. ..|..|+.+ +|.+|+||+||++.+ ++|+..+.|||+|++||+||..++|.|+|+|
T Consensus 188 ~pq~q~kt~~~~~-~~rk~V~~~-----~v~lf~hL~q~~~~t------t~f~~~~~IHPAv~~Lglq~a~~kI~GsnaR 255 (556)
T KOG1467|consen 188 NPQNQAKTLASAS-ASRKAVASQ-----KVSLFTHLPQYDRAT------TQFIFLDSIHPAVLRLGLQYALGKISGSNAR 255 (556)
T ss_pred chhhhhhhhcccC-ccccccccc-----eehhhhhhhHhhccc------ccccccccccHHHHHHHHHHhhcccCCccHH
Confidence 9999999877654 556666644 899999999999975 4466667799999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 008627 351 CIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIE 430 (559)
Q Consensus 351 aiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAIrrlk~~I~~l~~~~s~~eaK~~L~e~Id 430 (559)
||+||++|++||+||++|++++|+|||..+|++++.||.+|||++++|||+|||||++|+.++.++++.|+|+.|++.|+
T Consensus 256 CIa~L~afqevi~Dy~TP~~ktlsrdLt~~i~~qv~~L~~cRPLs~SmgNAiRflK~eI~~L~~s~~e~eaKe~L~~~I~ 335 (556)
T KOG1467|consen 256 CIAMLQAFQEVIKDYTTPPEKTLSRDLTAAISPQVSFLTQCRPLSISMGNAIRFLKNEISKLPISLSESEAKEELQSDID 335 (556)
T ss_pred HHHHHHHHHHHHHhccCCCccccchhhHhhhhhHHHHHhhcCCccchhhHHHHHHHHHHhhCCCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q 008627 431 RFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY 510 (559)
Q Consensus 431 ~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTy 510 (559)
+||+|+|..|++.|++++.++|+|||+||||++|++|+++|++||+.|++|+|+|+||||++||++|+++|.++||+|||
T Consensus 336 ~~i~eki~~A~qaI~q~a~~KI~dgdviltyg~s~vV~~ill~A~~~~k~frVvVVDSRP~~EG~~~lr~Lv~~GinctY 415 (556)
T KOG1467|consen 336 RFIAEKIILADQAISQHAVTKIQDGDVLLTYGSSSVVNMILLEAKELGKKFRVVVVDSRPNLEGRKLLRRLVDRGINCTY 415 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCEEEEecchHHHHHHHHHHHHhCcceEEEEEeCCCCcchHHHHHHHHHcCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecchHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 511 THINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 511 I~DsAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+++++++|+|.+|++||||||+||+||.||+|+||++|||+|++|||||
T Consensus 416 v~I~a~syim~evtkvfLGahailsNG~vysR~GTa~valvAna~nVPV 464 (556)
T KOG1467|consen 416 VLINAASYIMLEVTKVFLGAHAILSNGAVYSRVGTACVALVANAFNVPV 464 (556)
T ss_pred EEehhHHHHHHhcceeeechhhhhcCcchhhhcchHHHHHHhcccCCCE
Confidence 9999999999999999999999999999999999999999999999997
No 2
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=100.00 E-value=1e-51 Score=424.95 Aligned_cols=224 Identities=26% Similarity=0.447 Sum_probs=214.8
Q ss_pred CchHHHHHHHhhhcCCcccChHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHH
Q 008627 327 TLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLK 406 (559)
Q Consensus 327 ~VHPaVl~Lglq~~~~~I~GSnAraiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAIrrlk 406 (559)
.|||++..++.++++++|+||+++|++++.+|..++++++++. ..+|++.|+..+++|.+|||++++|+|++|+++
T Consensus 2 ~~~~~v~~~~~~i~~~~v~Ga~~i~~~a~~~l~~~~~~~~~~~----~~~l~~~l~~~~~~L~~arPt~v~l~nair~v~ 77 (310)
T PRK08535 2 EVMPEVLETAEKIKTMEIRGAGRIARAAAEALKDQAEKSDAES----PEEFKAEMRAAANILISTRPTAVSLPNAVRYVM 77 (310)
T ss_pred CCchhHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 4899999999999999999999999999999999999998865 568999999999999999999999999999999
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEc
Q 008627 407 SQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIV 486 (559)
Q Consensus 407 ~~I~~l~~~~s~~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVv 486 (559)
.... ..+.+++|+.|++.+++|++| +..+++.|++++.++|.||++|||||||+||+++|+.|+++|++|+|||+
T Consensus 78 ~~~~----~~~~~~~k~~l~e~~~~~~~e-~~~~~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~A~~~~k~~~V~v~ 152 (310)
T PRK08535 78 RYYS----GETVEEARESVIERAEEFIES-SENAVEKIGEIGAKRIRDGDVIMTHCNSSAALSVIKTAHEQGKDIEVIAT 152 (310)
T ss_pred Hhhc----cCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCEEEEeCCcHHHHHHHHHHHHCCCeEEEEEe
Confidence 8632 346889999999999999987 68899999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 487 DSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 487 ESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
||||.+||+.|+++|.+.||+||||+|++++|+|++||+||||||+|++||+++||+||+++|++||+|+|||
T Consensus 153 EsrP~~~G~~~a~~L~~~GI~vtlI~Dsav~~~m~~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~~~vPv 225 (310)
T PRK08535 153 ETRPRNQGHITAKELAEYGIPVTLIVDSAVRYFMKDVDKVVVGADAITANGAVINKIGTSQIALAAHEARVPF 225 (310)
T ss_pred cCCchhhHHHHHHHHHHCCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEEeHHhHHHHHHHHHHhCCCE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997
No 3
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=100.00 E-value=2.5e-49 Score=405.98 Aligned_cols=219 Identities=26% Similarity=0.410 Sum_probs=207.2
Q ss_pred HHHHHhhhcCCcccChHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHh
Q 008627 332 VYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAK 411 (559)
Q Consensus 332 Vl~Lglq~~~~~I~GSnAraiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAIrrlk~~I~~ 411 (559)
+..+...+++|+++|+++++++++.+|..++....+.. ..+|++.|+..+++|.+|||++++|+|+++++++.|+.
T Consensus 2 ~~~~~~~ik~~~vrGa~~ia~~aa~~l~~~~~~~~~~~----~~~~~~~l~~~~~~L~~arPt~v~l~nai~~~~~~i~~ 77 (301)
T TIGR00511 2 VEETAEKIRSMEIRGAGRIARAAAAALMEQAAKAESAS----PEEFRAEMREAANILISTRPTAVSLPNAVRYVLKYMSG 77 (301)
T ss_pred HHHHHHHHHhCcccCcHHHHHHHHHHHHHHHHhcccCC----HHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHhcc
Confidence 34566778999999999999999999999998876643 67899999999999999999999999999999998853
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCC
Q 008627 412 IPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK 491 (559)
Q Consensus 412 l~~~~s~~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~ 491 (559)
.+.+++|+.|++.+++|++| +..+++.|++++.++|.||++|||||+|+||+++|+.|+++|++|+|||+||||.
T Consensus 78 ----~~~~~~k~~l~~~~~~~~~e-~~~a~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~a~~~~~~f~V~v~EsrP~ 152 (301)
T TIGR00511 78 ----EDVETLRETVIERADAFINQ-SDKAQERIGEIGAKRIRDGDVVMTHCNSEAALSVIKTAFEQGKDIEVIATETRPR 152 (301)
T ss_pred ----CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecCCCc
Confidence 46789999999999999977 7899999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 492 ~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+||+.|+++|.+.||+||||+|++++|+|++||+||+|||+|++||+++||+||+++|++||+|+|||
T Consensus 153 ~~G~~~a~~L~~~gI~vtlI~Dsa~~~~m~~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~~~vPv 220 (301)
T TIGR00511 153 KQGHITAKELRDYGIPVTLIVDSAVRYFMKEVDHVVVGADAITANGALINKIGTSQLALAAREARVPF 220 (301)
T ss_pred chHHHHHHHHHHCCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEEEHHhHHHHHHHHHHhCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999997
No 4
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=100.00 E-value=2.3e-49 Score=398.62 Aligned_cols=212 Identities=39% Similarity=0.593 Sum_probs=194.4
Q ss_pred cccChHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhccCCCCHHHHH
Q 008627 343 DICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAK 422 (559)
Q Consensus 343 ~I~GSnAraiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAIrrlk~~I~~l~~~~s~~eaK 422 (559)
+|+|++++|+++|++|+++|.+++++. ..+|++.|+.++++|.++||++++|+|+++++++.|..+....+.++.+
T Consensus 1 qi~Gs~~~ai~al~~L~~~i~~~~~~~----~~el~~~L~~~~~~L~~arP~~~~l~n~v~~~~~~i~~~~~~~~~~~~~ 76 (282)
T PF01008_consen 1 QIRGSPAIAIAALEALRQVISDSKATT----VQELIEELRKAAKRLIKARPTSVSLGNAVRRILREIRKLDESEDFEEAK 76 (282)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHCHCSS----HHHHHHHHHHHHHHHHTSSTS-HHHHHHHHHHHHHHHHHHTTSSHHHHH
T ss_pred CccChHHHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHhhhhhhhhcccchHHHH
Confidence 589999999999999999999999876 6789999999999999999999999999999999888776677899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHH
Q 008627 423 ATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLV 502 (559)
Q Consensus 423 ~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~ 502 (559)
+.|++.+++|++| +..+.+.|++++.++|++|++|||||||++|+++|+.|+++|++|+|||+||||.+||+.||++|.
T Consensus 77 ~~l~~~i~~~~~e-~~~~~~~I~~~~~~~I~~~~~ILT~~~S~~v~~~l~~a~~~~~~~~V~v~es~P~~eG~~~a~~L~ 155 (282)
T PF01008_consen 77 QSLLEAIDEFLDE-IEQAREKIADHASELINDGDTILTHGYSSTVERFLLSAKKKGKKFRVIVLESRPYNEGRLMAKELA 155 (282)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHCCC-TTEEEEEES--SHHHHHHHHHHHTTEEEEEEEE--TTTTHHHTHHHHHH
T ss_pred HHHHHHHHHHHhH-HHHHHHHHHHHHHHhccCCeEEEEeCCchHHHHHHHHHHHcCCeEEEEEccCCcchhhhhHHHHhh
Confidence 9999999999998 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCceEEEecchHHHHhcc-ccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 503 RKGLSCTYTHINAISYIIHE-VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 503 ~~GI~vTyI~DsAvs~iM~~-VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+.||+|+||+|++++|+|++ ||+||+|||+|++||+|+||+||+++|++||+|+|||
T Consensus 156 ~~gi~v~~i~d~~~~~~m~~~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv 213 (282)
T PF01008_consen 156 EAGIPVTLIPDSAVGYVMPRDVDKVLIGADAVLANGGVVNKVGTLQLALAAKEFNVPV 213 (282)
T ss_dssp HTT-EEEEE-GGGHHHHHHCTESEEEEE-SEEETTS-EEEETTHHHHHHHHHHTT-EE
T ss_pred hcceeEEEEechHHHHHHHHhCCeeEEeeeEEecCCCEeehhhHHHHHHHHHhhCCCE
Confidence 99999999999999999999 9999999999999999999999999999999999997
No 5
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.9e-49 Score=401.41 Aligned_cols=223 Identities=28% Similarity=0.478 Sum_probs=214.6
Q ss_pred chHHHHHHHhhhcCCcccChHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHH
Q 008627 328 LHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKS 407 (559)
Q Consensus 328 VHPaVl~Lglq~~~~~I~GSnAraiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAIrrlk~ 407 (559)
+||.|..+...+++++|+|+.++|++++++|++++.+++|+. .++|++.|+...+.|.++||+++||+|++|+++.
T Consensus 2 ~~~~v~~~~~~lk~~~i~Ga~~ia~~a~eal~~~~~~~~~~~----~~~l~~~i~~~~~~L~~~~P~~~Sl~n~~r~v~~ 77 (301)
T COG1184 2 IMPEVDETAEKLKSMEIRGASWIAIAAAEALEILASDSQAPT----VEELIDAIRELSETLVKARPTAVSLGNLIRFVLR 77 (301)
T ss_pred chHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhcccccc----HHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHHh
Confidence 799999999999999999999999999999999999999987 7899999999999999999999999999999997
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcC
Q 008627 408 QIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVD 487 (559)
Q Consensus 408 ~I~~l~~~~s~~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvE 487 (559)
.. ...+.++.++.+.+.++.|+++ ++.|.+.|++.++++|.||++|||||+|++|+.+|+.|++.|++|+|||+|
T Consensus 78 ~~----~~~~~~~~~~~~~~~~~~~i~~-~~~a~~~ia~~~a~~i~dg~~IlTh~~S~~v~~~l~~A~~~~k~~~V~VtE 152 (301)
T COG1184 78 DS----SGGDKENRRQSLIKAAQEFIDR-VEKAKERIAEIGAERIHDGDVILTHSFSKTVLEVLKTAADRGKRFKVIVTE 152 (301)
T ss_pred cc----cccchhhHHHHHHHhHHHHHHH-HHHHHHHHHHHHHhhccCCCEEEEecCcHHHHHHHHHhhhcCCceEEEEEc
Confidence 22 2346788999999999999977 889999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 488 SRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 488 SRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
|||.+||+.|++.|.+.||+|++|+|++++++|.+||+||||||+|++||+++||+||++||++||++++||
T Consensus 153 SRP~~eG~~~ak~L~~~gI~~~~I~Dsa~~~~~~~vd~VivGad~I~~nG~lvnkiGT~~lA~~A~e~~~Pf 224 (301)
T COG1184 153 SRPRGEGRIMAKELRQSGIPVTVIVDSAVGAFMSRVDKVLVGADAILANGALVNKIGTSPLALAARELRVPF 224 (301)
T ss_pred CCCcchHHHHHHHHHHcCCceEEEechHHHHHHHhCCEEEECccceecCCcEEeccchHHHHHHHHHhCCCE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997
No 6
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=100.00 E-value=2.2e-48 Score=399.37 Aligned_cols=221 Identities=26% Similarity=0.386 Sum_probs=207.6
Q ss_pred HHHHHHhhhcCCcccChHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHH
Q 008627 331 AVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIA 410 (559)
Q Consensus 331 aVl~Lglq~~~~~I~GSnAraiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAIrrlk~~I~ 410 (559)
.+..+...+++|+|+|++++|++++.+|..+++.+.+.. ..+|.++|+.++++|.+|||++++|+|++++++..+.
T Consensus 3 ~~~~~~~~I~~m~vrGa~~ia~aa~~~l~~~~~~~~~~~----~~e~~~~l~~~~~~L~~~RPt~v~l~na~~~~~~~i~ 78 (303)
T TIGR00524 3 TYEDVADAIKSMVVRGAPAIGVAAAYGLALAARKIETDN----VEEFKEDLEKAADFLLSTRPTAVNLFWALERVLNSAE 78 (303)
T ss_pred CHHHHHHHHHhCeecChHHHHHHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHh
Confidence 356778889999999999999999999999998876643 6789999999999999999999999999999999885
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCc--------HHHHHHHHHHHHhCCceE
Q 008627 411 KIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSS--------SAVEMILQHAHELGKQFR 482 (559)
Q Consensus 411 ~l~~~~s~~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~S--------stV~~iL~~A~e~Gk~Fr 482 (559)
. ..+.+++|+.|++.+++|++|.+ .+++.|+++|.++|.||++||||||| +||+.+|+.|+++|++|+
T Consensus 79 ~---~~~~~~~k~~l~~~~~~~~~e~~-~~~~~Ia~~a~~~I~~g~~ILT~~~Sg~lat~~~~tv~~~l~~A~~~g~~~~ 154 (303)
T TIGR00524 79 N---GESVEEAKESLLREAIEIIEEDL-ETNRKIGENGAKLIKDGDTVLTHCNAGALATSDYGTALGVIRSAWEDGKRIR 154 (303)
T ss_pred c---cCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHccCCCEEEEecCCccccccCcchHHHHHHHHHHcCCceE
Confidence 3 34688999999999999999965 68899999999999999999999999 999999999999999999
Q ss_pred EEEcCCCCCchH-HHHHHHHHhCCCceEEEecchHHHHhc--cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 483 VVIVDSRPKHEG-KLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 483 ViVvESRP~~EG-~~LAk~L~~~GI~vTyI~DsAvs~iM~--~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
|||+||||.+|| +.++++|.+.||+||||+|++++|+|+ +||+||||||+|++||+++||+|||++|++||+|+|||
T Consensus 155 V~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~Dsa~~~~m~~~~vd~VlvGAd~v~~nG~v~nk~GT~~lA~~Ak~~~vPv 234 (303)
T TIGR00524 155 VIACETRPRNQGSRLTAWELMQDGIDVTLITDSMAAYFMQKGEIDAVIVGADRIARNGDVANKIGTYQLAVLAKEFRIPF 234 (303)
T ss_pred EEECCCCCccchHHHHHHHHHHCCCCEEEEChhHHHHHccccCCCEEEEcccEEecCCCEeEhhhHHHHHHHHHHhCCCE
Confidence 999999999999 778999999999999999999999999 99999999999999999999999999999999999997
No 7
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=100.00 E-value=2.1e-46 Score=379.91 Aligned_cols=212 Identities=25% Similarity=0.311 Sum_probs=196.3
Q ss_pred hHHHHHHHhhhcCCcccChHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHH
Q 008627 329 HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQ 408 (559)
Q Consensus 329 HPaVl~Lglq~~~~~I~GSnAraiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAIrrlk~~ 408 (559)
.|.+..+...++++.|+|++++++++..+|......+. ..++++.|....++|.++||++++|.|+++++.
T Consensus 3 ~~~~~~~~~~i~~m~vrGAp~i~~~aa~~l~~~a~~~~-------~~~~~~~l~~~~~~L~~aRPTavnL~~a~~~~~-- 73 (275)
T PRK08335 3 PPEVREILEEMKAERIRGASWLAKKGAEAYLLLAEELD-------GEELENALKELREEIPEVNPTMASLYNLARFIP-- 73 (275)
T ss_pred chHHHHHHHHHhhceecCHHHHHHHHHHHHHHHHHhcC-------hHHHHHHHHHHHHHHHHcCCcHHhHHHHHHHhc--
Confidence 46778888889999999999999999998876655431 256888899999999999999999999999971
Q ss_pred HHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCC
Q 008627 409 IAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDS 488 (559)
Q Consensus 409 I~~l~~~~s~~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvES 488 (559)
.++.++.+.+.+++|++| +..++++|++++.++|.+|++|||||||+||+++|+.|+++|++|+|||+||
T Consensus 74 ---------~~~~~~~~~~~a~~~~~~-~~~~~~~I~~~a~~~I~~g~~ILTh~~S~tv~~~l~~A~~~gk~~~V~v~Es 143 (275)
T PRK08335 74 ---------ITNNPELVKSRAEEFLRL-MEEAKREIGNIGSELIDDGDVIITHSFSSAVLEILKTAKRKGKRFKVILTES 143 (275)
T ss_pred ---------hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCEEEEECCcHHHHHHHHHHHHcCCceEEEEecC
Confidence 345677789999999987 6789999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 489 RPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 489 RP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
||++||.+|+++|.+.||+||||+|++++|+|++||+||||||+|++||+++||+|||++|++||+|+|||
T Consensus 144 rP~~qG~~la~eL~~~GI~vtlI~Dsa~~~~m~~vd~VivGAD~I~~nG~v~NKiGT~~lA~~Ak~~~vPf 214 (275)
T PRK08335 144 APDYEGLALANELEFLGIEFEVITDAQLGLFAKEATLALVGADNVTRDGYVVNKAGTYLLALACHDNGVPF 214 (275)
T ss_pred CCchhHHHHHHHHHHCCCCEEEEeccHHHHHHHhCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997
No 8
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=100.00 E-value=1.7e-46 Score=391.03 Aligned_cols=220 Identities=23% Similarity=0.319 Sum_probs=202.8
Q ss_pred HHHHHHhhhcCCcccChHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHH
Q 008627 331 AVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIA 410 (559)
Q Consensus 331 aVl~Lglq~~~~~I~GSnAraiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAIrrlk~~I~ 410 (559)
.+..+...+++|.|+|++++|+++..+|...+..+.... ..+|.+.|+..+++|.+|||++++|+|++++++..+.
T Consensus 32 ~~~~v~~aI~~m~vrGApaig~aaa~~lal~~~~~~~~~----~~~~~~~l~~~~~~L~~~RPtavnL~~ai~~~~~~i~ 107 (344)
T PRK05720 32 TAEEVADAIRDMVVRGAPAIGIAAAYGMALAAREDASDD----GEEFLKKLEEAAAYLAASRPTAVNLFWALDRMREVLA 107 (344)
T ss_pred CHHHHHHHHHhCeecCCcHHHHHHHHHHHHHHhhccCCC----HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 456677778999999999999999999998887764432 5679999999999999999999999999999998886
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCcH--------HHHHHHHHHHHhCCceE
Q 008627 411 KIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSS--------AVEMILQHAHELGKQFR 482 (559)
Q Consensus 411 ~l~~~~s~~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~Ss--------tV~~iL~~A~e~Gk~Fr 482 (559)
.. +.+++++.|++.+++|++|+ ..+++.|++++.++|++|++|||||||+ |++.+|+.|+++|++|+
T Consensus 108 ~~----~~~~~~~~l~~~a~~~~~e~-~~~~~~I~~~g~~~I~~g~~ILThc~sg~lat~~~gTal~~i~~A~~~gk~~~ 182 (344)
T PRK05720 108 PL----PGAERKAALEEEAIEIHEED-VEINRAIGEHGLTLIRKGQGILTHCNAGWLATAGYGTALAPIYAAKEKGIDIH 182 (344)
T ss_pred cC----CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccCCCEEEEecCCCcceecchhHHHHHHHHHHHcCCceE
Confidence 52 57899999999999999996 5788999999999999999999999995 67889999999999999
Q ss_pred EEEcCCCCCchHHHH-HHHHHhCCCceEEEecchHHHHhc--cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 483 VVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 483 ViVvESRP~~EG~~L-Ak~L~~~GI~vTyI~DsAvs~iM~--~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
|||+||||++||.+| +++|.+.||+||||+|++++|+|+ +||+||||||+|++||+++||+|||++|++||+|+|||
T Consensus 183 V~v~EsRP~~qG~~lta~eL~~~GI~vtlI~Dsa~~~~M~~~~vd~VivGAd~I~~nG~v~NkiGT~~lAl~Ak~~~vPf 262 (344)
T PRK05720 183 VYADETRPRLQGARLTAWELYQAGIDVTVITDNMAAHLMQTGKIDAVIVGADRIAANGDVANKIGTYQLAIAAKYHGVPF 262 (344)
T ss_pred EEEcCCCChhhhHHHHHHHHHHCCCCEEEEcccHHHHHhcccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCE
Confidence 999999999999965 999999999999999999999998 59999999999999999999999999999999999997
No 9
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=100.00 E-value=3.4e-46 Score=386.84 Aligned_cols=220 Identities=22% Similarity=0.345 Sum_probs=202.3
Q ss_pred HHHHHHHhhhcCCcccChHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHH
Q 008627 330 PAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQI 409 (559)
Q Consensus 330 PaVl~Lglq~~~~~I~GSnAraiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAIrrlk~~I 409 (559)
..+..+...+++|.|+|++++++++..+|......+ . ...+|.++|+..+++|.+|||++++|+|++++++..+
T Consensus 28 ~~~~~~~~aI~~m~vRGApaig~~aa~~~~l~~~~~-~-----~~~~~~~~l~~~~~~L~~~RPtavnL~~A~~~~~~~i 101 (331)
T TIGR00512 28 TTVEDVADAIRDMRVRGAPAIGIVAAYGLALAAREA-D-----EREEFKALLEEKLQYLVSSRPTAVNLSWALDRMRAAL 101 (331)
T ss_pred CCHHHHHHHHHhCcccCchHHHHHHHHHHHHHHhhc-C-----CHHHHHHHHHHHHHHHHHhCCcHhhHHHHHHHHHHHH
Confidence 345667777899999999999999888887666554 1 2568999999999999999999999999999999988
Q ss_pred HhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC----EEEEecCcH--------HHHHHHHHHHHh
Q 008627 410 AKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGD----VLLTYGSSS--------AVEMILQHAHEL 477 (559)
Q Consensus 410 ~~l~~~~s~~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dGd----vILT~g~Ss--------tV~~iL~~A~e~ 477 (559)
..+ .+.+++|+.|++.+++|++|. ..+++.|++++.++|++|+ +|||||||+ ||+.+|+.|+++
T Consensus 102 ~~~---~~~~~~k~~l~e~a~~~~~e~-~~~~~~I~~~g~~~I~dg~~~~~~ILThcnsg~lat~~~gtal~~l~~A~~~ 177 (331)
T TIGR00512 102 EAA---KTVADIKEALLAEAERILEED-LEDNRAIGENGAALIKKGVAAPLRVLTHCNTGSLATAGYGTALGVIRSAHEK 177 (331)
T ss_pred hcc---CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCCCCceEEeecCCccccccccchHHHHHHHHHHc
Confidence 763 468899999999999999885 6789999999999999999 999999884 899999999999
Q ss_pred CCceEEEEcCCCCCchHHHH-HHHHHhCCCceEEEecchHHHHhc--cccEEEEcceeeecCCceecccchHHHHHHHhh
Q 008627 478 GKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG 554 (559)
Q Consensus 478 Gk~FrViVvESRP~~EG~~L-Ak~L~~~GI~vTyI~DsAvs~iM~--~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~ 554 (559)
|++|+|||+||||++||.+| +++|.+.||+||||+|++++|+|+ +||+||+|||+|++||+++||+|||++|++||+
T Consensus 178 g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VivGAd~v~~nG~v~nkiGT~~lA~~Ak~ 257 (331)
T TIGR00512 178 GRLEHVYADETRPRLQGARLTAWELVQEGIPATLITDSMAAHLMKHGEVDAVIVGADRIAANGDTANKIGTYQLAVLAKH 257 (331)
T ss_pred CCceEEEECCCCchhhHHHHHHHHHHHCCCCEEEEcccHHHHHhcccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHH
Confidence 99999999999999999965 999999999999999999999999 899999999999999999999999999999999
Q ss_pred CCCCC
Q 008627 555 FHIPV 559 (559)
Q Consensus 555 ~~VPV 559 (559)
|+|||
T Consensus 258 ~~vPf 262 (331)
T TIGR00512 258 HGVPF 262 (331)
T ss_pred hCCCE
Confidence 99997
No 10
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=1.2e-44 Score=376.43 Aligned_cols=220 Identities=20% Similarity=0.271 Sum_probs=198.9
Q ss_pred HHHHHHhhhcCCcccChHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHH
Q 008627 331 AVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIA 410 (559)
Q Consensus 331 aVl~Lglq~~~~~I~GSnAraiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAIrrlk~~I~ 410 (559)
++..+..-+++|.|+|++++++++..+|........+. ...+|.+.|+..+++|.++||++++|+|++++++..+.
T Consensus 32 ~~~~v~~aI~~m~vRGApaig~aaa~g~~l~~~~~~~~----~~~~~~~~l~~~~~~L~~aRPTavnL~~a~~r~~~~~~ 107 (339)
T PRK06036 32 TLESLCEAIKSLRVRGAPALGAAGGYGIALAARLSKAK----DVDELLKDLKVAAETLKSTRPTAVNLSWGVDRVLKAAL 107 (339)
T ss_pred CHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhcccC----CHHHHHHHHHHHHHHHHHhCCcHhhHHHHHHHHHHHhh
Confidence 45666777899999999999999888877666554332 25789999999999999999999999999999887654
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCcH--------HHHHHHHHHHHhCCceE
Q 008627 411 KIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSS--------AVEMILQHAHELGKQFR 482 (559)
Q Consensus 411 ~l~~~~s~~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~Ss--------tV~~iL~~A~e~Gk~Fr 482 (559)
. ..+.+++++.+++.+++|++|. ..++++|++++.++|++|++|||||||+ |++.+|+.|+++|++|+
T Consensus 108 ~---~~~~~~~~~~~~e~a~~~~~e~-~~~~~~I~~~g~~~I~~g~~ILThc~sg~lat~~~gTal~~l~~A~~~gk~~~ 183 (339)
T PRK06036 108 D---AEDVEEIRDIALREAERIAEED-VARNKLIGKHGAKLLEDGDTVLTHCNAGRLACVDWGTALGVIRSAVEQGKEIK 183 (339)
T ss_pred c---cCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccCCCEEEEecCCccccccccchHHHHHHHHHHcCCceE
Confidence 3 2467899999999999999884 6899999999999999999999999995 77899999999999999
Q ss_pred EEEcCCCCCchHHHH-HHHHHhCCCceEEEecchHHHHhcc--ccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 483 VVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIHE--VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 483 ViVvESRP~~EG~~L-Ak~L~~~GI~vTyI~DsAvs~iM~~--VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
|||+||||++||.+| +++|.+.||+||||+|++++|+|++ ||+||+|||+|++|| ++||+|||++|++||+|||||
T Consensus 184 V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd~VivGAd~I~anG-v~NKiGT~~lA~~Ak~~~vPf 262 (339)
T PRK06036 184 VIACETRPLNQGSRLTTWELMQDNIPVTLITDSMAGIVMRQGMVDKVIVGADRITRDA-VFNKIGTYTHSVLAKEHEIPF 262 (339)
T ss_pred EEEcCCCchhhHHHHHHHHHHHcCCCEEEEehhHHHHHhccCCCCEEEECccchhhcC-eehhhhHHHHHHHHHHhCCCE
Confidence 999999999999987 8999999999999999999999987 999999999999997 999999999999999999997
No 11
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=1.2e-43 Score=371.23 Aligned_cols=224 Identities=22% Similarity=0.275 Sum_probs=201.4
Q ss_pred HHHHHHhhhcCCcccChHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHH
Q 008627 331 AVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIA 410 (559)
Q Consensus 331 aVl~Lglq~~~~~I~GSnAraiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAIrrlk~~I~ 410 (559)
.+..+...+++|.|+|++++++++..+|...+...... ...++.+.|+..+++|.++||++++|.|+++++++.+.
T Consensus 45 ~~~~v~~aI~~M~vRGApaigiaAa~glal~~~~~~~~----~~~~~~~~l~~~~~~L~~aRPTaVnL~~a~~~~~~~~~ 120 (363)
T PRK05772 45 TVEEVALAIRNMQVRGAPAIGITAGYGMVLALIENNVK----TLDDAIRELTRAKTILDSARPTAVNLVWATSRMLNKAK 120 (363)
T ss_pred CHHHHHHHHHhCcccCCcHHHHHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHHHHhcCCcHHhHHHHHHHHHHHHH
Confidence 45566677899999999999999999888777764321 24678899999999999999999999999999998876
Q ss_pred hcc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCcH---------HHHHHHHHHHHhC
Q 008627 411 KIP---ISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSS---------AVEMILQHAHELG 478 (559)
Q Consensus 411 ~l~---~~~s~~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~Ss---------tV~~iL~~A~e~G 478 (559)
... ...+.+++++.+.+..+.|++|++ .++++|+++++++|.||++|||||||+ |+..+|+.|+++|
T Consensus 121 ~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~-~~~~~I~~~g~~~I~dg~~ILThcnsg~Lat~~g~gtal~~i~~a~~~g 199 (363)
T PRK05772 121 NTVESGNAKSVNELIELLKVEAKKIFEEEY-DAEIQMGLYGLEKLNDGDTVLTQCNAGGLATGTGLGTALAPVKLAKALG 199 (363)
T ss_pred hhhccccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcCCCCEEEEecCCcchhhccccccHHHHHHHHHHCC
Confidence 431 124678999999999999999964 689999999999999999999999985 6789999999999
Q ss_pred CceEEEEcCCCCCchHHHH-HHHHHhCCCceEEEecchHHHHhc--cccEEEEcceeeecCCceecccchHHHHHHHhhC
Q 008627 479 KQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF 555 (559)
Q Consensus 479 k~FrViVvESRP~~EG~~L-Ak~L~~~GI~vTyI~DsAvs~iM~--~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~ 555 (559)
++|+|||+||||++||.+| +++|.+.||+||||+|++++|+|+ +||+||||||+|++||+++||+|||++|++||+|
T Consensus 200 k~f~V~v~EsRP~~qG~rlta~eL~~~GIpvtlI~Dsa~~~~m~~~~Vd~VivGAD~I~~NG~v~NKiGTy~lA~~Ak~~ 279 (363)
T PRK05772 200 MSVSVIAPETRPWLQGSRLTVYELMEEGIKVTLITDTAVGLVMYKDMVNNVMVGADRILRDGHVFNKIGTFKEAVIAHEL 279 (363)
T ss_pred CeEEEEECCCCccchhHHHHHHHHHHCCCCEEEEehhHHHHHHhhcCCCEEEECccEEecCCCEeehhhhHHHHHHHHHh
Confidence 9999999999999999877 899999999999999999999996 5999999999999999999999999999999999
Q ss_pred CCCC
Q 008627 556 HIPV 559 (559)
Q Consensus 556 ~VPV 559 (559)
||||
T Consensus 280 ~vPf 283 (363)
T PRK05772 280 GIPF 283 (363)
T ss_pred CCCE
Confidence 9997
No 12
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=100.00 E-value=6.2e-43 Score=364.64 Aligned_cols=222 Identities=18% Similarity=0.223 Sum_probs=201.8
Q ss_pred HHHHHHhhhcCCcccChHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHH
Q 008627 331 AVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIA 410 (559)
Q Consensus 331 aVl~Lglq~~~~~I~GSnAraiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAIrrlk~~I~ 410 (559)
.+..+..-+++|.|+|++++++++..+|...+...... ...+|++.|+..+++|.++||++++|.|++++++..+.
T Consensus 43 ~~~~v~~aI~~M~vRGApaIgvaAa~glal~~~~~~~~----~~~~~~~~l~~~~~~L~~~RPTavnL~~a~~~~~~~~~ 118 (356)
T PRK08334 43 TVEEVAEAIKTMTVRGAPAIGAAAAFGLALYAETSKAK----TKDEFMDGFYKAYETLKNTRPTAVNLFWALNRIKKLVE 118 (356)
T ss_pred CHHHHHHHHHhCcccCcHHHHHHHHHHHHHHHHhcccC----CHHHHHHHHHHHHHHHHHcCCcHHhHHHHHHHHHHHHH
Confidence 45566777899999999999999999998888765322 25678999999999999999999999999999998876
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEEecC--------cHHHHHHHHHHHHhCCceE
Q 008627 411 KIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGS--------SSAVEMILQHAHELGKQFR 482 (559)
Q Consensus 411 ~l~~~~s~~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~--------SstV~~iL~~A~e~Gk~Fr 482 (559)
.... .+.+++++.+++..+.|+++. ..++++|+++++++|.||+ |||||| ++|++.+|+.|+++|+.|+
T Consensus 119 ~~~~-~~~~~~~~~l~~~a~~i~~~d-~~~~~~Ig~~g~~li~dg~-ILTHcnaG~LAt~~~gTal~vi~~A~~~gk~~~ 195 (356)
T PRK08334 119 EHLE-DPLDEIKRLIVEEAQKIADED-VEANLRMGHYGAEVLPEGN-VLTHCNAGSLATVHLGTVGAVLRVMHKDGTLKL 195 (356)
T ss_pred hhcc-CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCC-EEEecCcchhhhcccchHHHHHHHHHHcCCeEE
Confidence 4311 457899999999999999885 5788999999999999999 999996 5889999999999999999
Q ss_pred EEEcCCCCCchHHHH-HHHHHhCCCceEEEecchHHHHhc--cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 483 VVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 483 ViVvESRP~~EG~~L-Ak~L~~~GI~vTyI~DsAvs~iM~--~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
|||+||||++||.+| +++|.+.||+||||+|++++|+|+ +||+||||||+|++||+++||+|||++|++||+|||||
T Consensus 196 V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsav~~~M~~~~Vd~VivGAd~I~~nG~v~NKiGTy~lA~~Ak~~~vPf 275 (356)
T PRK08334 196 LWVDETRPVLQGARLSAWEYHYDGIPLKLISDNMAGFVMQQGKVDAIIVGADRIVANGDFANKIGTYTLAVLAKEHGIPF 275 (356)
T ss_pred EEECCCCchhhHHHHHHHHHHHCCCCEEEEehhHHHHHhhhcCCCEEEECccEEecCCCEeehhhHHHHHHHHHHhCCCE
Confidence 999999999999999 799999999999999999999997 79999999999999999999999999999999999998
No 13
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=2.6e-42 Score=357.12 Aligned_cols=201 Identities=23% Similarity=0.310 Sum_probs=174.0
Q ss_pred HHHHHHhhhcCCcccChHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHH
Q 008627 331 AVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIA 410 (559)
Q Consensus 331 aVl~Lglq~~~~~I~GSnAraiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAIrrlk~~I~ 410 (559)
.+..+...+++|.|+|++++++++..++...... . ..|...+++|.+|||++++|+|++++++...
T Consensus 41 ~~~~~~~aI~~m~vRGAp~ig~~aa~g~~l~~~~---------~----~~~~~~~~~L~~~RPtavnL~~a~~~~~~~~- 106 (329)
T PRK06371 41 NSDDVAYAIKNMVVRGAPAIGVTAAYGLAMASKN---------G----ENMDEAVEKIRSTRPTAYDLFKAIRYMNSNE- 106 (329)
T ss_pred CHHHHHHHHHhCeecChHHHHHHHHHHHHHHHHh---------H----HHHHHHHHHHHhcCcchhhHHHHHHHHHhhc-
Confidence 4556677789999999999999887777543321 1 4477788999999999999999999997532
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCc--------HHHHHHHHHHHHhCCceE
Q 008627 411 KIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSS--------SAVEMILQHAHELGKQFR 482 (559)
Q Consensus 411 ~l~~~~s~~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~S--------stV~~iL~~A~e~Gk~Fr 482 (559)
.+.+++ +++++|. ..++++|+++|.++|++|++||||||| +|++.+|+.|+++|++|+
T Consensus 107 -----~~~~~a--------~~~~~e~-~~~~~~I~~~g~~~I~~g~~ILThcnsg~la~~~~gTal~~l~~A~~~gk~f~ 172 (329)
T PRK06371 107 -----FDMNAA--------RRYAMEI-IGRSKKIGEYGNELIKNGARILTHCNAGALAVVDWGTALAPIRIAHRNGKNIF 172 (329)
T ss_pred -----CcHHHH--------HHHHHHH-HHHHHHHHHHHHHHcCCCCEEEEeCCCCcceeccchhHHHHHHHHHHcCCeeE
Confidence 233344 3455553 457789999999999999999999987 457899999999999999
Q ss_pred EEEcCCCCCchHHHH-HHHHHhCCCceEEEecchHHHHhc--cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 483 VVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 483 ViVvESRP~~EG~~L-Ak~L~~~GI~vTyI~DsAvs~iM~--~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
|||+||||.+||.+| +++|.+.||+||||+|++++|+|+ +||+||+|||+|++||+++||+|||++|++||+|||||
T Consensus 173 V~v~EsRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd~VivGAd~I~aNG~v~NKiGT~~lAl~Ak~~~VPf 252 (329)
T PRK06371 173 VFVDETRPRLQGARLTAWELAQEGIDHAIIADNAAGYFMRKKEIDLVIVGADRIASNGDFANKIGTYEKAVLAKVNGIPF 252 (329)
T ss_pred EEECCCCCcchHHHHHHHHHHHCCCCEEEEcccHHHHHhhhcCCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCE
Confidence 999999999999986 999999999999999999999997 59999999999999999999999999999999999998
No 14
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-40 Score=332.09 Aligned_cols=227 Identities=26% Similarity=0.369 Sum_probs=214.4
Q ss_pred chHHHHHHHhhhcCCcccChHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHH
Q 008627 328 LHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKS 407 (559)
Q Consensus 328 VHPaVl~Lglq~~~~~I~GSnAraiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAIrrlk~ 407 (559)
.|-.+..|...++.+.++||.++|+++|..|+++|.+.+|+. ..+|.+.++.+++.|..+.|+.++.||.+||+++
T Consensus 7 ~~~~i~~fI~~lk~r~v~gS~aiA~eTl~llr~iIs~~rw~~----~n~Li~~vr~~g~~L~~A~psE~~~gNiirrIlk 82 (353)
T KOG1465|consen 7 TEDEISEFIAALKKRLVRGSYAIAIETLNLLRQIISRERWST----ANDLIESVRDVGKKLHAAQPSELSCGNIIRRILK 82 (353)
T ss_pred hhhHHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHhhCccc----HHHHHHHHHHHHHHhhhcCCchhhhhHHHHHHHH
Confidence 455888999999999999999999999999999999999987 6799999999999999999999999999999999
Q ss_pred HHHhccC---------C-------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 008627 408 QIAKIPI---------S-------------------------LSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIR 453 (559)
Q Consensus 408 ~I~~l~~---------~-------------------------~s~~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~ 453 (559)
.|+++.. + .+..++|+.|++.|+++|.| |+..++.|+.++.++|+
T Consensus 83 liReE~~~l~~~~~s~~s~~~~Sl~kLl~~~~e~~~~~~~S~~~~~~lr~~~i~~I~eli~E-ie~~~E~Ia~Qa~ehih 161 (353)
T KOG1465|consen 83 LIREEVLELTGGATSDESSPSESLHKLLQSTEESHTNKKLSSADAKKLRKDLIEGIKELITE-IEGSRENIAVQAIEHIH 161 (353)
T ss_pred HHHHHHHHHhccCCCCCCchHHHHHHHHhCCCccccccccccccHHHHHHHHHHHHHHHHHH-HhhhhHhHHHHHHHHhc
Confidence 9986421 0 01235899999999999999 89999999999999999
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceee
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaI 533 (559)
++++|||+|.|.||++||++|.+.|++|+|||.|.-|.++|+.||+.|+++||++|+|+|++++.+|++|+|||+|+++|
T Consensus 162 snEviLT~g~SrTV~~FL~~A~kk~Rkf~viVaE~~p~~qgH~~Ak~la~~giettVI~daaVfA~MsrVnKVIigt~av 241 (353)
T KOG1465|consen 162 SNEVILTLGSSRTVENFLKHAAKKGRKFRVIVAEGAPNNQGHELAKPLAQAGIETTVIPDAAVFAMMSRVNKVIIGTHAV 241 (353)
T ss_pred cCceEEecCccHHHHHHHHHHHhccCceEEEEeecCCcccchHhhHHHHHcCCeeEEeccHHHHHHhhhcceEEEEeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCceecccchHHHHHHHhhCCCCC
Q 008627 534 LSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 534 laNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
++||++....|++++|++||+|.+||
T Consensus 242 l~NGgl~~~~G~~~vAlaAk~h~vPv 267 (353)
T KOG1465|consen 242 LANGGLRAPSGVHTVALAAKHHSVPV 267 (353)
T ss_pred ecCCCeeccchHHHHHHHHHhcCCcE
Confidence 99999999999999999999999997
No 15
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.8e-40 Score=334.27 Aligned_cols=224 Identities=23% Similarity=0.306 Sum_probs=200.4
Q ss_pred hHHHHHHHhhhcCCcccChHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHH
Q 008627 329 HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQ 408 (559)
Q Consensus 329 HPaVl~Lglq~~~~~I~GSnAraiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAIrrlk~~ 408 (559)
.-.++.+..-+++|.|+|++++.+++...+.-...+..... ..+++...|....+.|.++||++++|.|++++++..
T Consensus 31 ~~~~~dva~AIk~M~VRGAPAIgv~AayG~alaa~~~~~~~---~~~e~~~~le~a~~~l~~tRPTAvNLfwal~rm~~~ 107 (346)
T COG0182 31 CKTYEDVAEAIKDMVVRGAPAIGVAAAYGLALAARESKNDS---KGEEFIEALEKAAETLKSTRPTAVNLFWALDRMLNA 107 (346)
T ss_pred eccHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHhccccc---chHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHH
Confidence 44567788889999999999999987766655544433221 247899999999999999999999999999999998
Q ss_pred HHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCc--------HHHHHHHHHHHHhCCc
Q 008627 409 IAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSS--------SAVEMILQHAHELGKQ 480 (559)
Q Consensus 409 I~~l~~~~s~~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~S--------stV~~iL~~A~e~Gk~ 480 (559)
+.+.. +.++.++.+.+...+...|++ .++..|+++++++|.+|++||||||. +|.+.+++.||++|+.
T Consensus 108 ~~~~~---~v~~~~~~~~~eA~~i~~ED~-e~n~~iG~~G~~ll~~~~~VLThCNaGaLAt~~~GTAlgviR~a~~~gk~ 183 (346)
T COG0182 108 AKEAI---EVKEPKESILQEAEEIAEEDL-EANRAIGENGAELLPDGDTVLTHCNAGALATVGYGTALGVIRSAHEEGKD 183 (346)
T ss_pred Hhhcc---chhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccCCeEEeeecCCceeecCccchHHHHHHHHHCCCe
Confidence 87642 267889999988888888864 67889999999999999999999998 5799999999999999
Q ss_pred eEEEEcCCCCCchHHHH-HHHHHhCCCceEEEecchHHHHhc--cccEEEEcceeeecCCceecccchHHHHHHHhhCCC
Q 008627 481 FRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHI 557 (559)
Q Consensus 481 FrViVvESRP~~EG~~L-Ak~L~~~GI~vTyI~DsAvs~iM~--~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~V 557 (559)
.+||+.|+||++||.+| +++|.+.||++|+|+||+++|+|+ .||+|++|||+|+.||++.||+|||++|++||+|||
T Consensus 184 i~v~a~ETRP~lQGARLTawEL~~~GIpvtLItD~aag~~M~~g~Id~viVGADRI~~nGdvaNKIGTY~lAvlAk~~gI 263 (346)
T COG0182 184 IRVFADETRPYLQGARLTAWELVQDGIPVTLITDNAAGHLMQQGMIDAVIVGADRIAANGDVANKIGTYQLAVLAKHHGI 263 (346)
T ss_pred eEEEeCCCccccccceeeHHHHhhcCCceEEEeccHHHHHHHhCCCcEEEEccceeecCCcchhhhhHHHHHHHHHHcCC
Confidence 99999999999999999 999999999999999999999998 499999999999999999999999999999999999
Q ss_pred CC
Q 008627 558 PV 559 (559)
Q Consensus 558 PV 559 (559)
||
T Consensus 264 PF 265 (346)
T COG0182 264 PF 265 (346)
T ss_pred Ce
Confidence 98
No 16
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.3e-38 Score=312.23 Aligned_cols=206 Identities=27% Similarity=0.348 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhc--cCCCCHHHHHHHHH
Q 008627 349 ARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKI--PISLSESEAKATLH 426 (559)
Q Consensus 349 AraiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAIrrlk~~I~~l--~~~~s~~eaK~~L~ 426 (559)
+.++|++++|.++++.-+. +...+|...|+...+.|.+.-++++++..+...+++.+..- .+..+.+++|+.++
T Consensus 28 a~~vAAIraL~~vL~~s~a----~Ti~el~~~l~~a~~tL~~~d~ss~Sl~agcdlF~Rfvtr~slld~~Df~~ck~~l~ 103 (313)
T KOG1466|consen 28 AMAVAAIRALLEVLRRSQA----TTIAELENELKSASATLKKTDTSSISLRAGCDLFMRFVTRASLLDYEDFEQCKQHLL 103 (313)
T ss_pred hhHHHHHHHHHHHHhhccc----chHHHHHHHHHHHHHHHHccCccchhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 5578999999999987443 34789999999999999999999999999988888777543 34456899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCC
Q 008627 427 SDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGL 506 (559)
Q Consensus 427 e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI 506 (559)
|..+.|++. +..++..|+..+.+||.||++|||||||++|.++|..|+++++.|+|||+||||...|..|+++|.+.||
T Consensus 104 erg~~F~~~-~~~sR~~IA~l~~~Fi~dg~~ILtHg~SRvVl~~L~~Aa~~~~~F~V~vTEsrPd~sG~lm~~~L~~~~I 182 (313)
T KOG1466|consen 104 ERGELFIER-ARKSRQKIAMLAQDFITDGCTILTHGYSRVVLEVLLTAAQNKKRFRVYVTESRPDGSGKLMAKELKKLGI 182 (313)
T ss_pred HHHHHHHHH-HHHHHHHHHHHhhhHhhCCCEEEEcchhHHHHHHHHHHHhcCceEEEEEecCCCCCchhHHHHHHHhcCC
Confidence 999999965 7889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecchHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 507 SCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 507 ~vTyI~DsAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
|||+++|+|++|+|.+||+||+|||.|.+||+++|++|||++|++||+.++||
T Consensus 183 PvtlvlDSaVgyvMe~vD~VlVGAEGVvEsGGIIN~iGTyq~~v~Ak~~~kPf 235 (313)
T KOG1466|consen 183 PVTLVLDSAVGYVMERVDLVLVGAEGVVESGGIINKIGTYQVAVCAKSMNKPF 235 (313)
T ss_pred CeEEEehhhHHHHHhhccEEEEccceeeecCceeeecccchhhhhHHhcCCCe
Confidence 99999999999999999999999999999999999999999999999999997
No 17
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=100.00 E-value=1.4e-35 Score=297.88 Aligned_cols=183 Identities=22% Similarity=0.249 Sum_probs=156.0
Q ss_pred hcCCcccChHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhccCCCCH
Q 008627 339 YLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSE 418 (559)
Q Consensus 339 ~~~~~I~GSnAraiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAIrrlk~~I~~l~~~~s~ 418 (559)
+.++..+||.++++.+|+.|+.--. + ...++.|.++||.|..+.|..++++..- +.+.
T Consensus 6 ~~~d~~~Gs~~~~~~~l~~l~~~~~------------~-----~~~~~~l~~~~~~Ma~~~n~~~~~~~~~-----~~~~ 63 (253)
T PRK06372 6 LLSDNASGSADVAFKIISFFSHNDI------------D-----ENIIKDLKNYFFGMGLVRNVCDSIISGP-----NLRP 63 (253)
T ss_pred hhcCccccHHHHHHHHHHHHhccch------------h-----hhHHHHHHHhCcchHHHHHHHHHHHccC-----cCCH
Confidence 4577889999999999997763111 1 1267778899999999999998887432 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHH
Q 008627 419 SEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL 498 (559)
Q Consensus 419 ~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LA 498 (559)
++++. .+..+++.|+++|.++| +||+|||||+|++|+.+|..+ ++.|+|||+||||++||+.|+
T Consensus 64 ~~~~~------------~~~~~~~~~~~~A~~~i-~~dvILT~s~S~~v~~~l~~~---~~~~~V~v~ESrP~~eG~~~a 127 (253)
T PRK06372 64 KNLKL------------GIEKHEKMAIEHAKPLF-NDSVIGTISSSQVLKAFISSS---EKIKSVYILESRPMLEGIDMA 127 (253)
T ss_pred HHHHH------------HHHHHHHHHHHHHHhhc-CCCEEEEeCCcHHHHHHHHhc---CCCCEEEEecCCCchHHHHHH
Confidence 33322 24467889999999999 679999999999999999765 345899999999999999999
Q ss_pred HHHHhCCCceEEEecchHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 499 RRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 499 k~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
++|.+.||+||||+|++++|+|++||+||+|||+|++||+++||+||+++|++||+|+|||
T Consensus 128 ~~L~~~GI~vtli~Dsa~~~~m~~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vPv 188 (253)
T PRK06372 128 KLLVKSGIDVVLLTDASMCEAVLNVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYLKKPF 188 (253)
T ss_pred HHHHHCCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCE
Confidence 9999999999999999999999999999999999999999999999999999999999997
No 18
>KOG1468 consensus Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-33 Score=283.26 Aligned_cols=230 Identities=23% Similarity=0.301 Sum_probs=192.8
Q ss_pred hhccCCCCCchHHHHHHHhhhcCCcccChHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhH
Q 008627 319 QSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSM 398 (559)
Q Consensus 319 ~~~~~~~~~VHPaVl~Lglq~~~~~I~GSnAraiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsm 398 (559)
..+|..-..||-+..- ++.|+++|++++|+..-..|.--|..-..+. ...+.+.|..-++||.+.||++++|
T Consensus 24 e~kYi~v~~v~d~~~v----Ik~MqVRGAPaIAivg~Lslaveiq~~~~~~----~ds~~~~i~~kl~fLvssRPTAVnl 95 (354)
T KOG1468|consen 24 ETKYIPVRGVSDAWAV----IKSMQVRGAPAIAIVGSLSLAVEIQKKGFPG----SDSLKEFIINKLNFLVSSRPTAVNL 95 (354)
T ss_pred ceeEEEecchhHHHHH----HHHHhhcCccHHHHHHHHHHHHHHhhccCCc----hHHHHHHHHHHHHHHHhcCchhhhH
Confidence 3456555667776554 4799999999988754332222222211222 4568889999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC------CCEEEEecCc--------
Q 008627 399 GNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRD------GDVLLTYGSS-------- 464 (559)
Q Consensus 399 gNAIrrlk~~I~~l~~~~s~~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~d------GdvILT~g~S-------- 464 (559)
.|+.+.|+..+.+.. .++...++.+++..++.+.++ ..-+..|+.++++++.+ .-+|||||+.
T Consensus 96 ~~aa~~lk~i~~~~~--~~~~~~~~~~~~~~e~ml~~d-l~~N~~ig~~g~~~Llq~~~~~~kltVlThCNTGSLATagy 172 (354)
T KOG1468|consen 96 ANAANELKPIAASED--KSEKAKREKCISYTEDMLEKD-LADNRAIGDNGAKELLQAVKDKGKLTVLTHCNTGSLATAGY 172 (354)
T ss_pred HHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHhcCCCCceEEEEeecCCchhhccc
Confidence 999999999987653 245677888888888888775 45678899999887643 2589999997
Q ss_pred HHHHHHHHHHHHhCCceEEEEcCCCCCchHHHH-HHHHHhCCCceEEEecchHHHHhc--cccEEEEcceeeecCCceec
Q 008627 465 SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSVLSNGTVCS 541 (559)
Q Consensus 465 stV~~iL~~A~e~Gk~FrViVvESRP~~EG~~L-Ak~L~~~GI~vTyI~DsAvs~iM~--~VdkVlLGAdaIlaNGsVvN 541 (559)
+|.+.+|+..|+.|+.-+|||+|+||++||.+| +.+|....||.|+|+|++++++|+ .||.||+|||+|..||+..|
T Consensus 173 GTALGVIRsLh~~grLehvyctETRPyNQGsRLTA~ELvhekiPatLItDS~vA~~m~~~~vdavvvGADrVarNGDTAN 252 (354)
T KOG1468|consen 173 GTALGVIRSLHSLGRLEHVYCTETRPYNQGSRLTAFELVHEKIPATLITDSMVAAAMKNHQVDAVVVGADRVARNGDTAN 252 (354)
T ss_pred chHHHHHHHHHhcCCcceEEecccccCCcccchhhHHHHhccCcchhhhhHHHHHHHhcCCCCEEEEcccceeccCcchh
Confidence 689999999999999999999999999999999 999999999999999999999999 79999999999999999999
Q ss_pred ccchHHHHHHHhhCCCCC
Q 008627 542 RVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 542 KvGT~~IALaAk~~~VPV 559 (559)
|+|||++|++||||||||
T Consensus 253 KIGTy~LAv~aKhhgipF 270 (354)
T KOG1468|consen 253 KIGTYQLAVLAKHHGIPF 270 (354)
T ss_pred hhhhhHHHHHHHhcCCce
Confidence 999999999999999997
No 19
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=96.39 E-value=0.033 Score=56.03 Aligned_cols=95 Identities=14% Similarity=0.113 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCC-ceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHH
Q 008627 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGK-QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY 518 (559)
Q Consensus 440 A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk-~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~ 518 (559)
..+.|++.|+++|++|++| -++.++|+..+++...+..+ .+.+.++=+ ....+..|.+.||++..+.+
T Consensus 6 ~K~~IA~~Aa~lI~dg~~I-gLgsGST~~~l~~~L~~~~~~~~~itvVt~-----S~~~a~~l~~~gi~v~~l~~----- 74 (220)
T PRK00702 6 LKKAAAEAAAEYVEDGMIV-GLGTGSTAAYFIDALGERVKEGLIIGGVPT-----SEASTELAKELGIPLFDLNE----- 74 (220)
T ss_pred HHHHHHHHHHHhCCCCCEE-EECCcHHHHHHHHHHHhhhccCCCEEEECC-----cHHHHHHHHhCCCeEEcHHH-----
Confidence 4568999999999999975 67888888877777654221 123333311 33456667678888652211
Q ss_pred HhccccEEEEcceeeecCCceecccchH
Q 008627 519 IIHEVTRVFLGASSVLSNGTVCSRVGTA 546 (559)
Q Consensus 519 iM~~VdkVlLGAdaIlaNGsVvNKvGT~ 546 (559)
+.++|..|.|||.|-.++.++---|-+
T Consensus 75 -~~~iD~afdGaD~vd~~~~~ikg~g~a 101 (220)
T PRK00702 75 -VDSLDLYVDGADEIDPHLNLIKGGGAA 101 (220)
T ss_pred -CCccCEEEECCCeECCCCCcEECcHHH
Confidence 346999999999999998877765544
No 20
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=96.35 E-value=0.033 Score=55.96 Aligned_cols=87 Identities=22% Similarity=0.198 Sum_probs=60.5
Q ss_pred HHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCC--ceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHH
Q 008627 442 RVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGK--QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI 519 (559)
Q Consensus 442 e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk--~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~i 519 (559)
+.|++.|+++|++|++| -++.++|+..+++...+..+ .+.+.|+=+ ....+..|.+.||++..+ .-
T Consensus 3 ~~IA~~A~~~I~~g~~I-~ldsGST~~~~~~~L~~~~~~~~l~itvVt~-----S~~~a~~l~~~gi~v~~l------~~ 70 (218)
T TIGR00021 3 RAAAEAAAEYVEDGMVV-GLGTGSTVAYFIEALGERVKQEGLDIVGVPT-----SKQTAELARELGIPLSSL------DE 70 (218)
T ss_pred HHHHHHHHHhCCCCCEE-EECCcHHHHHHHHHHHHhhhccCCCEEEEeC-----CHHHHHHHHHCCCCEEcH------hH
Confidence 57899999999999986 56778888777776654321 123333311 345577777789987511 11
Q ss_pred hccccEEEEcceeeecCCcee
Q 008627 520 IHEVTRVFLGASSVLSNGTVC 540 (559)
Q Consensus 520 M~~VdkVlLGAdaIlaNGsVv 540 (559)
+.++|..|.|||.|-.|++++
T Consensus 71 ~~~iDiafdGaD~id~~~~~i 91 (218)
T TIGR00021 71 VPELDLAIDGADEVDPNLQLI 91 (218)
T ss_pred CCccCEEEECCCeECCCCCEe
Confidence 337999999999999999885
No 21
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=96.05 E-value=0.039 Score=54.99 Aligned_cols=92 Identities=21% Similarity=0.128 Sum_probs=60.9
Q ss_pred HHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhC----CceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHH
Q 008627 442 RVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELG----KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS 517 (559)
Q Consensus 442 e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~G----k~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs 517 (559)
+.|++.|+++|.+|++|. ++.++|+..+++...+.. +.++|+ +-| ...+..|.+.|+++..+-
T Consensus 3 ~~IA~~A~~~I~~g~~I~-ldsGST~~~l~~~L~~~~~~~~~~itvV-TnS------~~~a~~l~~~~i~vi~lg----- 69 (213)
T cd01398 3 RAAARAAVDYVEDGMVIG-LGTGSTVAYFIEALGERVREEGLNIVGV-PTS------FQTEELARELGIPLTDLD----- 69 (213)
T ss_pred HHHHHHHHHhCCCCCEEE-ECchHHHHHHHHHHHHhhhccCCCEEEE-eCc------HHHHHHHHhCCCeEEeCC-----
Confidence 578999999999999755 677888877777664421 234443 222 234556666677754443
Q ss_pred HHhccccEEEEcceeeecCCceecccchHH
Q 008627 518 YIIHEVTRVFLGASSVLSNGTVCSRVGTAC 547 (559)
Q Consensus 518 ~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~ 547 (559)
---.+|++|+|||.|-.++.++.--|-+.
T Consensus 70 -~~~~~D~af~Gad~id~~~~~~~~~~~a~ 98 (213)
T cd01398 70 -EVPRLDLAIDGADEVDPDLNLIKGGGGAL 98 (213)
T ss_pred -CccccCEEEECCCcCCCCcCcccChHHHH
Confidence 11269999999999998876554444433
No 22
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=94.09 E-value=0.26 Score=50.27 Aligned_cols=92 Identities=16% Similarity=0.237 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHh-CC-CceEEEe------
Q 008627 441 DRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KG-LSCTYTH------ 512 (559)
Q Consensus 441 ~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~-~G-I~vTyI~------ 512 (559)
.+.|++.|+.+|.+||+|+ ++.++|+..+.....+ ...++|+-- +...+..|.+ .+ +++.++-
T Consensus 78 K~~IA~~Aa~~I~~g~tIf-ld~GtT~~~la~~L~~-~~~ltVvTn-------sl~ia~~l~~~~~~~~v~l~GG~~~~~ 148 (256)
T PRK10434 78 KELIAEAAVSLIHDGDSII-LDAGSTVLQMVPLLSR-FNNITVMTN-------SLHIVNALSELDNEQTILMPGGTFRKK 148 (256)
T ss_pred HHHHHHHHHhhCCCCCEEE-EcCcHHHHHHHHHhcc-CCCeEEEEC-------CHHHHHHHhhCCCCCEEEEECCEEeCC
Confidence 5789999999999999887 5666776666666533 223555422 3456777775 32 4554331
Q ss_pred -cchHHH----Hhc--cccEEEEcceeeecCCceec
Q 008627 513 -INAISY----IIH--EVTRVFLGASSVLSNGTVCS 541 (559)
Q Consensus 513 -DsAvs~----iM~--~VdkVlLGAdaIlaNGsVvN 541 (559)
.+.++. .+. .+|++|+|+++|-.++++..
T Consensus 149 ~~~~~G~~a~~~l~~~~~D~afi~~~gi~~~~G~t~ 184 (256)
T PRK10434 149 SASFHGQLAENAFEHFTFDKLFIGTDGIDLNAGVTT 184 (256)
T ss_pred CCeEECHHHHHHHHhCcCCEEEEcCceecCCCCcCC
Confidence 112222 223 59999999999998877654
No 23
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=93.95 E-value=0.5 Score=48.60 Aligned_cols=92 Identities=17% Similarity=0.211 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHh-CCCceEEEe-------
Q 008627 441 DRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTH------- 512 (559)
Q Consensus 441 ~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~-~GI~vTyI~------- 512 (559)
.+.|++.|+++|.+||+|+ ++.++|+..+..... ..+.++||-- +...+..|.. .++++.++-
T Consensus 93 K~~IA~~Aa~~I~dgd~If-ld~GtT~~~la~~L~-~~~~ltVvTn-------sl~ia~~l~~~~~~~v~llGG~~~~~~ 163 (269)
T PRK09802 93 KRSVAKAAVELIQPGHRVI-LDSGTTTFEIARLMR-KHTDVIAMTN-------GMNVANALLEAEGVELLMTGGHLRRQS 163 (269)
T ss_pred HHHHHHHHHhhCCCCCEEE-ECCchHHHHHHHhcC-cCCCeEEEeC-------CHHHHHHHHhCCCCEEEEECCEEecCC
Confidence 4689999999999999887 455666655555542 2234666532 3456777775 366654331
Q ss_pred ----cchHHHHhc--cccEEEEcceeeecCCceec
Q 008627 513 ----INAISYIIH--EVTRVFLGASSVLSNGTVCS 541 (559)
Q Consensus 513 ----DsAvs~iM~--~VdkVlLGAdaIlaNGsVvN 541 (559)
....-..|. .+|+.||||++|-.++++..
T Consensus 164 ~~~~G~~a~~~l~~~~~d~afig~~gi~~~~G~t~ 198 (269)
T PRK09802 164 QSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVST 198 (269)
T ss_pred CceECHHHHHHHHhccCCEEEEcCceecCCCCcCC
Confidence 111112233 69999999999988877653
No 24
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=93.81 E-value=0.65 Score=47.00 Aligned_cols=92 Identities=13% Similarity=0.196 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHh-CCCceEEE-------
Q 008627 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYT------- 511 (559)
Q Consensus 440 A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~-~GI~vTyI------- 511 (559)
..+.|++.|+++|++||+|+ ++.++|+..+.....+ +.++|+- .....+..|.. .++.+.++
T Consensus 79 ~K~~IA~~Aa~lI~~gd~If-ld~GtT~~~l~~~L~~--~~ltVvT-------Ns~~ia~~l~~~~~~~vil~GG~~~~~ 148 (240)
T PRK10411 79 HKADIAREALAWIEEGMVIA-LDASSTCWYLARQLPD--INIQVFT-------NSHPICQELGKRERIQLISSGGTLERK 148 (240)
T ss_pred HHHHHHHHHHHhCCCCCEEE-EcCcHHHHHHHHhhCC--CCeEEEe-------CCHHHHHHHhcCCCCEEEEECCEEeCC
Confidence 35789999999999999877 5566666666665532 2445442 23455677764 34554322
Q ss_pred ----ecchHHHHhc--cccEEEEcceeeecCCceec
Q 008627 512 ----HINAISYIIH--EVTRVFLGASSVLSNGTVCS 541 (559)
Q Consensus 512 ----~DsAvs~iM~--~VdkVlLGAdaIlaNGsVvN 541 (559)
.....-..++ .+|++|+|+++|..+|++..
T Consensus 149 ~~~~~G~~a~~~l~~~~~d~afis~~gi~~~~G~~~ 184 (240)
T PRK10411 149 YGCYVNPSLISQLKSLEIDLFIFSCEGIDSSGALWD 184 (240)
T ss_pred CCceECHHHHHHHHhcCCCEEEEeceeECCCCCccc
Confidence 1111112233 69999999999987777664
No 25
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=93.75 E-value=0.39 Score=45.62 Aligned_cols=92 Identities=17% Similarity=0.287 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhC-CCceEEEe------
Q 008627 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK-GLSCTYTH------ 512 (559)
Q Consensus 440 A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~-GI~vTyI~------ 512 (559)
..++|++.|+++|++|++|. ++.++|+..+.....+ .+.++|+ + ....++..|.+. ++++.++-
T Consensus 5 ~K~~IA~~A~~~I~~~~~If-ld~GtT~~~la~~L~~-~~~ltVv-T------nsl~ia~~l~~~~~~~vi~~GG~~~~~ 75 (161)
T PF00455_consen 5 EKRAIARKAASLIEDGDTIF-LDSGTTTLELAKYLPD-KKNLTVV-T------NSLPIANELSENPNIEVILLGGEVNPK 75 (161)
T ss_pred HHHHHHHHHHHhCCCCCEEE-EECchHHHHHHHHhhc-CCceEEE-E------CCHHHHHHHHhcCceEEEEeCCEEEcC
Confidence 35789999999999999866 4556666666666543 2244444 2 234567788776 34443321
Q ss_pred -----cchHHHHhc--cccEEEEcceeeecCCcee
Q 008627 513 -----INAISYIIH--EVTRVFLGASSVLSNGTVC 540 (559)
Q Consensus 513 -----DsAvs~iM~--~VdkVlLGAdaIlaNGsVv 540 (559)
....-..|+ .+|+.|+|+++|..++++.
T Consensus 76 ~~~~~G~~a~~~l~~~~~d~afi~~~gi~~~~G~~ 110 (161)
T PF00455_consen 76 SLSFVGPIALEALRQFRFDKAFIGADGISEEGGLT 110 (161)
T ss_pred CCcEECchHHHHHHhhccceEEecccEecCCCccc
Confidence 111112223 6999999999999976654
No 26
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=92.93 E-value=0.56 Score=47.87 Aligned_cols=93 Identities=17% Similarity=0.274 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec------
Q 008627 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI------ 513 (559)
Q Consensus 440 A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D------ 513 (559)
....|++.|+++|++||+|+--+-| |...+.....+ ...++||. .+...+..|.... .+++|..
T Consensus 77 eK~~IA~~Aa~lI~~g~~ifld~GT-T~~~la~~L~~-~~~ltviT-------Nsl~ia~~l~~~~-~~~vi~~GG~~~~ 146 (253)
T COG1349 77 EKRAIAKAAATLIEDGDTIFLDAGT-TTLALARALPD-DNNLTVIT-------NSLNIAAALLEKP-NIEVILLGGTVRK 146 (253)
T ss_pred HHHHHHHHHHhhCCCCCEEEECCCc-HHHHHHHHhCc-CCCeEEEe-------CCHHHHHHHHhCC-CCeEEEeCcEEEc
Confidence 3568999999999999988765544 44444444432 23355553 2456677787763 3333221
Q ss_pred -------chHHHHhc--cccEEEEcceeeecCCceecc
Q 008627 514 -------NAISYIIH--EVTRVFLGASSVLSNGTVCSR 542 (559)
Q Consensus 514 -------sAvs~iM~--~VdkVlLGAdaIlaNGsVvNK 542 (559)
...-..++ .+|++|+|+++|-.++++...
T Consensus 147 ~~~~~~G~~a~~~l~~~~~d~aFig~~gi~~~~g~~~~ 184 (253)
T COG1349 147 KSGSFVGPLAEEFLRQFNFDKAFIGADGIDLEGGLTTF 184 (253)
T ss_pred CCCeEEcHHHHHHHHhCcccEEEEeccccCCCCCcCcC
Confidence 11222333 699999999999998877653
No 27
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=92.29 E-value=0.87 Score=46.32 Aligned_cols=89 Identities=12% Similarity=0.076 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhC-CCceEEE-------
Q 008627 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK-GLSCTYT------- 511 (559)
Q Consensus 440 A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~-GI~vTyI------- 511 (559)
..+.|++.|+.+|.+||+|+. +.++|+..+...... +.++|+- - +...+..|.+. ++++.++
T Consensus 79 ~K~~IA~~Aa~~I~~g~~Ifl-d~GsT~~~la~~L~~--~~ltVvT-n------sl~ia~~l~~~~~~~v~l~GG~~~~~ 148 (251)
T PRK13509 79 EKVRIAKAASQLCNPGESVVI-NCGSTAFLLGRELCG--KPVQIIT-N------YLPLANYLIDQEHDSVIIMGGQYNKS 148 (251)
T ss_pred HHHHHHHHHHHhCCCCCEEEE-CCcHHHHHHHHHhCC--CCeEEEe-C------CHHHHHHHHhCCCCEEEEECCeEcCC
Confidence 357899999999999998874 555565555555432 3444442 2 33567777653 4444322
Q ss_pred ----ecchHHHHhc--cccEEEEcceeeecCCce
Q 008627 512 ----HINAISYIIH--EVTRVFLGASSVLSNGTV 539 (559)
Q Consensus 512 ----~DsAvs~iM~--~VdkVlLGAdaIlaNGsV 539 (559)
.... ...|. .+|+.|+||++|-.+|-.
T Consensus 149 ~~~~~G~~-~~~l~~~~~d~aFig~~gi~~~G~~ 181 (251)
T PRK13509 149 QSITLSPQ-GSENSLYAGHWMFTSGKGLTADGLY 181 (251)
T ss_pred cceeECHH-HHHHHhCcCCEEEECCCcCCCCcCC
Confidence 1112 23444 589999999999877643
No 28
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=91.68 E-value=0.95 Score=46.18 Aligned_cols=92 Identities=16% Similarity=0.248 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHh-CCCceEEE-------
Q 008627 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYT------- 511 (559)
Q Consensus 440 A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~-~GI~vTyI------- 511 (559)
..+.|++.|+++|.+||+|+- +.|+|+..+...... .+.++|+ + .....+..|.. .++++.++
T Consensus 77 ~K~~IA~~Aa~~I~~g~tIfl-D~GtT~~~la~~L~~-~~~ltVv-T------Nsl~ia~~l~~~~~~~villGG~~~~~ 147 (252)
T PRK10906 77 EKERIARKVASQIPNGATLFI-DIGTTPEAVAHALLN-HSNLRIV-T------NNLNVANTLMAKEDFRIILAGGELRSR 147 (252)
T ss_pred HHHHHHHHHHhhCCCCCEEEE-cCcHHHHHHHHHhcC-CCCcEEE-E------CcHHHHHHHhhCCCCEEEEECCEEecC
Confidence 357899999999999998875 555555555555432 2345444 2 23455777764 34554333
Q ss_pred ecchHHH----Hhc--cccEEEEcceeeecCCcee
Q 008627 512 HINAISY----IIH--EVTRVFLGASSVLSNGTVC 540 (559)
Q Consensus 512 ~DsAvs~----iM~--~VdkVlLGAdaIlaNGsVv 540 (559)
..+.++. .++ .+|+.||||+.|-.++++.
T Consensus 148 ~~~~~G~~a~~~l~~~~~d~afi~~~Gi~~~~G~t 182 (252)
T PRK10906 148 DGGIIGEATLDFISQFRLDFGILGISGIDSDGSLL 182 (252)
T ss_pred CCccCCHHHHHHHHhccCCEEEEcCCEECCCCCcC
Confidence 1122222 222 5999999999999876654
No 29
>PLN02384 ribose-5-phosphate isomerase
Probab=91.59 E-value=1.8 Score=45.06 Aligned_cols=94 Identities=20% Similarity=0.226 Sum_probs=65.8
Q ss_pred HHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCc--eE-EEEcCCCCCchHHHHHHHHHhCCCceEEEecchHH
Q 008627 441 DRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQ--FR-VVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS 517 (559)
Q Consensus 441 ~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~--Fr-ViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs 517 (559)
.+..+..|+++|++|.+ +=+|.-+||..+++...+..+. ++ +.++-| ..+.+..+.+.||+++-+.+
T Consensus 36 K~~aA~~A~~~V~~gmv-VGLGTGSTv~~~I~~La~r~~~~~l~~I~~VpT-----S~~T~~~a~~~GIpl~~l~~---- 105 (264)
T PLN02384 36 KKIAAYKAVEFVESGMV-LGLGTGSTAKHAVDRIGELLRQGKLKNIIGIPT-----SKKTHEQAVSLGIPLSDLDS---- 105 (264)
T ss_pred HHHHHHHHHHhccCCCE-EEecchHHHHHHHHHHHHhhhhccccceEEEcC-----cHHHHHHHHHcCCcEecccc----
Confidence 34466677889999875 7788889998888766543221 33 555533 23445666678999766544
Q ss_pred HHhccccEEEEcceeeecCCceecccchH
Q 008627 518 YIIHEVTRVFLGASSVLSNGTVCSRVGTA 546 (559)
Q Consensus 518 ~iM~~VdkVlLGAdaIlaNGsVvNKvGT~ 546 (559)
..++|..|=|||-|-.|+.++--=|-+
T Consensus 106 --v~~iDiaiDGADEId~~lnlIKGGGga 132 (264)
T PLN02384 106 --HPVVDLAIDGADEVDPNLNLVKGRGGS 132 (264)
T ss_pred --CCcccEEEECCceeCCCCCEEEeCcHH
Confidence 457999999999999998877666643
No 30
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=89.55 E-value=1.6 Score=47.72 Aligned_cols=114 Identities=24% Similarity=0.298 Sum_probs=79.4
Q ss_pred HHHHHHHHHHH----hcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHh-CCCceEEE--
Q 008627 439 LADRVIVKHAV----TKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYT-- 511 (559)
Q Consensus 439 ~A~e~Ia~~Aa----~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~-~GI~vTyI-- 511 (559)
.|+++|+++.. .+|..+||+||-|+|..++-+|....+-|. .+.+ -||++- +...++. .||.|.|.
T Consensus 107 ~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~p~a--NILl--PrPGfp---~Y~~~a~~~~lEVR~ydl 179 (447)
T KOG0259|consen 107 PARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLANPGA--NILL--PRPGFP---LYDTRAIYSGLEVRYYDL 179 (447)
T ss_pred HHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcCCCC--ceec--CCCCCc---hHHHhhhhcCceeEeecc
Confidence 45666776643 357778999999999999988887765443 3333 466653 3333332 57877774
Q ss_pred --------ecchHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 512 --------HINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 512 --------~DsAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
....+-++.-+=++.++=-.==-.+|.|+++-=--.||-+|+.++++|
T Consensus 180 LPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~v 235 (447)
T KOG0259|consen 180 LPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMV 235 (447)
T ss_pred cCcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeE
Confidence 346777777765555543333456799999999999999999999985
No 31
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=89.12 E-value=3.5 Score=42.09 Aligned_cols=93 Identities=14% Similarity=0.177 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhC--CceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHH
Q 008627 441 DRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELG--KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY 518 (559)
Q Consensus 441 ~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~G--k~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~ 518 (559)
.+..++.|+++|++|.+ +=+|.-+||..+|+...+.. ..+++.++=|. .+....+.+.||++.-+.+
T Consensus 8 K~~aa~~A~~~V~~gmv-vGLGTGSTv~~~i~~L~~~~~~~~l~i~~VptS-----~~t~~~a~~~Gipl~~l~~----- 76 (228)
T PRK13978 8 KLMTLNDVLSQINGDMT-LGIGTGSTMELLLPQMAQLIKERGYNITGVCTS-----NKIAFLAKELGIKICEIND----- 76 (228)
T ss_pred HHHHHHHHHHhCCCCCE-EEeCchHHHHHHHHHHHHHhhccCccEEEEeCc-----HHHHHHHHHcCCcEechhh-----
Confidence 44567778899999875 77889999988887654422 22456655332 2334555578999666544
Q ss_pred HhccccEEEEcceeeecCCceecccch
Q 008627 519 IIHEVTRVFLGASSVLSNGTVCSRVGT 545 (559)
Q Consensus 519 iM~~VdkVlLGAdaIlaNGsVvNKvGT 545 (559)
..++|..|=|||-|-.|+.++--=|-
T Consensus 77 -~~~iDiaiDGADevd~~lnlIKGgGg 102 (228)
T PRK13978 77 -VDHIDLAIDGADEVDPSLNIIKGGGG 102 (228)
T ss_pred -CCceeEEEecCceecCCccEEecCcH
Confidence 25799999999999999887755553
No 32
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=88.02 E-value=3.7 Score=41.80 Aligned_cols=91 Identities=13% Similarity=0.061 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhC-CCceEEEe-------
Q 008627 441 DRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK-GLSCTYTH------- 512 (559)
Q Consensus 441 ~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~-GI~vTyI~------- 512 (559)
.+.|++.|+++|.+|++|+.=+.|. +..+.+.... ...++|+ +- ....+..|... ++.+.++-
T Consensus 79 K~~IA~~Aa~lI~~g~tIflD~GtT-~~~la~~L~~-~~~ltvv-Tn------sl~i~~~l~~~~~~~villGG~~~~~~ 149 (252)
T PRK10681 79 KRRAAQLAATLVEPNQTLFFDCGTT-TPWIIEAIDN-ELPFTAV-CY------SLNTFLALQEKPHCRAILCGGEFHASN 149 (252)
T ss_pred HHHHHHHHHhhcCCCCEEEEECCcc-HHHHHHhcCC-CCCeEEE-EC------CHHHHHHHhhCCCCEEEEECcEEecCc
Confidence 5789999999999999998655544 4444444422 1234444 22 33456677643 44443321
Q ss_pred ----cchHHHHhc--cccEEEEcceeeecCCcee
Q 008627 513 ----INAISYIIH--EVTRVFLGASSVLSNGTVC 540 (559)
Q Consensus 513 ----DsAvs~iM~--~VdkVlLGAdaIlaNGsVv 540 (559)
....-..+. .+|+.|+||++|-..+++.
T Consensus 150 ~~~~G~~~~~~l~~~~~D~afig~~gi~~~~G~~ 183 (252)
T PRK10681 150 AIFKPLDFQQTLDNICPDIAFYSAAGVHVSKGAT 183 (252)
T ss_pred ceeeCHHHHHHHHhhCCCEEEEeCceecCCCCcC
Confidence 111112223 6999999999998776654
No 33
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=84.38 E-value=3.5 Score=35.83 Aligned_cols=82 Identities=18% Similarity=0.295 Sum_probs=56.4
Q ss_pred EEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHH----hccccEEEEcceee
Q 008627 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI----IHEVTRVFLGASSV 533 (559)
Q Consensus 458 ILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~i----M~~VdkVlLGAdaI 533 (559)
|+..|++..-..+++...+.+ ..|+++|..|. .++.+.+.|+++.+..-.....+ +.+++.||+..+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~--~~vvvid~d~~-----~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-- 71 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG--IDVVVIDRDPE-----RVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTD-- 71 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT--SEEEEEESSHH-----HHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESS--
T ss_pred eEEEcCCHHHHHHHHHHHhCC--CEEEEEECCcH-----HHHHHHhcccccccccchhhhHHhhcCccccCEEEEccC--
Confidence 678899988888888877633 78888888754 37888889987666432222222 236888887765
Q ss_pred ecCCceecccchHHHHHHHhhC
Q 008627 534 LSNGTVCSRVGTACVAMVAYGF 555 (559)
Q Consensus 534 laNGsVvNKvGT~~IALaAk~~ 555 (559)
+..-+..+++.|+.+
T Consensus 72 -------~d~~n~~~~~~~r~~ 86 (116)
T PF02254_consen 72 -------DDEENLLIALLAREL 86 (116)
T ss_dssp -------SHHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHH
Confidence 566777888888863
No 34
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=77.12 E-value=7.1 Score=34.04 Aligned_cols=81 Identities=19% Similarity=0.286 Sum_probs=50.3
Q ss_pred EEEEecCcHHHHHHHHHHHHh-CCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc---hHHHHhc------cc-cE
Q 008627 457 VLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---AISYIIH------EV-TR 525 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~-Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds---Avs~iM~------~V-dk 525 (559)
+|-||.....+.++|....++ ...++|||+|..+..+-..+++++.+.+..++|+... ..+..+. .- =.
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a~~~~i 82 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHAKGEYI 82 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH--SSEE
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccccccccccccccccccccccccccccccceeEE
Confidence 456677767777777776665 5678888888777667777788877667777777632 2222222 12 34
Q ss_pred EEEcceeeecCC
Q 008627 526 VFLGASSVLSNG 537 (559)
Q Consensus 526 VlLGAdaIlaNG 537 (559)
+++-+|.++..+
T Consensus 83 ~~ld~D~~~~~~ 94 (169)
T PF00535_consen 83 LFLDDDDIISPD 94 (169)
T ss_dssp EEEETTEEE-TT
T ss_pred EEeCCCceEcHH
Confidence 566677666665
No 35
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=75.05 E-value=41 Score=34.12 Aligned_cols=55 Identities=9% Similarity=0.058 Sum_probs=40.3
Q ss_pred CchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcce--eeecCCceecccch
Q 008627 491 KHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGAS--SVLSNGTVCSRVGT 545 (559)
Q Consensus 491 ~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAd--aIlaNGsVvNKvGT 545 (559)
..+-.++++.+.+.|+++..|+++.-+.+-+.+|.+|.... .....+.+-+.++.
T Consensus 188 ~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~s~~~~ 244 (278)
T PRK11557 188 RRELNLAADEALRVGAKVLAITGFTPNALQQRASHCLYTIAEEQATRSAAISSTHAQ 244 (278)
T ss_pred CHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEEeCCCCcccchHHHHHHHHH
Confidence 34556778999999999999999999999999999997532 22333444455553
No 36
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.78 E-value=22 Score=38.40 Aligned_cols=92 Identities=18% Similarity=0.185 Sum_probs=57.4
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceee
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaI 533 (559)
.+.+|+..|.+..=..+-+.+.+.| ..|+++|..+...=.+...+|.+.|+.+ +........+.++|.||+++..-
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G--~~V~~~d~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~d~vv~~~g~~ 79 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLG--AKVILTDEKEEDQLKEALEELGELGIEL--VLGEYPEEFLEGVDLVVVSPGVP 79 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchHHHHHHHHHHHhcCCEE--EeCCcchhHhhcCCEEEECCCCC
Confidence 4677888898875555555566656 5777777764332234467787778763 33222234566789988876432
Q ss_pred ecCCceecccchHHHHHHHhhCCCCC
Q 008627 534 LSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 534 laNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.. ..+...|+++|+|+
T Consensus 80 ~~----------~~~~~~a~~~~i~~ 95 (450)
T PRK14106 80 LD----------SPPVVQAHKKGIEV 95 (450)
T ss_pred CC----------CHHHHHHHHCCCcE
Confidence 21 23667788888875
No 37
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=73.72 E-value=24 Score=37.46 Aligned_cols=135 Identities=13% Similarity=0.064 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCC-------------ceEEE
Q 008627 418 ESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGK-------------QFRVV 484 (559)
Q Consensus 418 ~~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk-------------~FrVi 484 (559)
.+++++.+.+.++.|... ....+.+.+..++++.-..+++|-|.+..+..+|....+.|. ..+||
T Consensus 26 ~~~v~~a~~~~~~~~~~~--~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi 103 (363)
T TIGR01437 26 SDEVADAQKRGAQNYFEI--KELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVV 103 (363)
T ss_pred CHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEE
Confidence 456666666666555432 223344555555565544678888888887777776665554 23677
Q ss_pred EcCCCCCchHH--HHHHHHHhCCCceEEEe------cchHHHHhccccEEEEccee-eecCCceecccchHHHHHHHhhC
Q 008627 485 IVDSRPKHEGK--LLLRRLVRKGLSCTYTH------INAISYIIHEVTRVFLGASS-VLSNGTVCSRVGTACVAMVAYGF 555 (559)
Q Consensus 485 VvESRP~~EG~--~LAk~L~~~GI~vTyI~------DsAvs~iM~~VdkVlLGAda-IlaNGsVvNKvGT~~IALaAk~~ 555 (559)
+ .+|.+... ....-+...|..+.++. ...+...+..=+++++-... -...|.+.. -..|+-+|+.|
T Consensus 104 ~--~~~~~~~~~~~~~~~~~~~g~~~v~v~~~~~~d~~~le~ai~~~t~ai~~v~~~~~~~g~~~~---~~~i~~~a~~~ 178 (363)
T TIGR01437 104 L--PKGHNVDYGAPVETMVRLGGGKVVEAGYANECSAEQLEAAITEKTAAILYIKSHHCVQKSMLS---VEDAAQVAQEH 178 (363)
T ss_pred E--ECccchhcCCchHHHHHhcCCeEEEEcCCCCCCHHHHHHhcChhceEEEEEecCCCCcCCcCC---HHHHHHHHHHc
Confidence 6 34544321 12223344566555542 23344444332332221100 012343433 24688899999
Q ss_pred CCCC
Q 008627 556 HIPV 559 (559)
Q Consensus 556 ~VPV 559 (559)
|+||
T Consensus 179 gi~v 182 (363)
T TIGR01437 179 NLPL 182 (363)
T ss_pred CCeE
Confidence 9985
No 38
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=73.60 E-value=5.6 Score=40.91 Aligned_cols=96 Identities=23% Similarity=0.245 Sum_probs=65.8
Q ss_pred EecCcHHH-HHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCC----ceEEEecchHHHHhccccEEEEcceeee
Q 008627 460 TYGSSSAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGL----SCTYTHINAISYIIHEVTRVFLGASSVL 534 (559)
Q Consensus 460 T~g~SstV-~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI----~vTyI~DsAvs~iM~~VdkVlLGAdaIl 534 (559)
+.|-|+.| ..+++...++|...+|.++|-++...- .+.+...++ .+-+....++..+|+.||.||-=|..+.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~---~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~ 78 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKF---LKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVP 78 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCceEEEEccccccccc---chhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccc
Confidence 44556655 566777777776667777776555432 223333333 3343445688888999999998888777
Q ss_pred cCC-------ceecccchHHHHHHHhhCCCC
Q 008627 535 SNG-------TVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 535 aNG-------sVvNKvGT~~IALaAk~~~VP 558 (559)
..| .-+|--||..|--+|+.++|+
T Consensus 79 ~~~~~~~~~~~~vNV~GT~nvl~aa~~~~Vk 109 (280)
T PF01073_consen 79 PWGDYPPEEYYKVNVDGTRNVLEAARKAGVK 109 (280)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 766 235679999999999999886
No 39
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=73.54 E-value=99 Score=31.97 Aligned_cols=44 Identities=16% Similarity=-0.081 Sum_probs=37.1
Q ss_pred CCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcce
Q 008627 488 SRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGAS 531 (559)
Q Consensus 488 SRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAd 531 (559)
|+-..|-.++++...+.|+++..|+++..+-+-+.+|.+|.-..
T Consensus 187 sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~~~ 230 (281)
T COG1737 187 SGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLVPV 230 (281)
T ss_pred CCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEeccC
Confidence 44445667788999999999999999999999999999998743
No 40
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.30 E-value=16 Score=39.94 Aligned_cols=72 Identities=18% Similarity=0.138 Sum_probs=47.9
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcc
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGA 530 (559)
.+..|+.+|...+=..+...+.+.| ++|+++|.++......+.+.|.+.||.+.+-.... ....+|.||++.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G--~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~---~~~~~D~Vv~s~ 86 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELG--ARVTVVDDGDDERHRALAAILEALGATVRLGPGPT---LPEDTDLVVTSP 86 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc---ccCCCCEEEECC
Confidence 4668888887765555555555545 57999998876555567788999998775422222 334578887765
No 41
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=72.41 E-value=30 Score=35.54 Aligned_cols=95 Identities=16% Similarity=0.169 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCC-ceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHH
Q 008627 441 DRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGK-QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI 519 (559)
Q Consensus 441 ~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk-~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~i 519 (559)
.+..+..|++++.+| .|+=.|.-+|+..||+...+..+ .+.+..+-| ..+....+.+.||+++.+.+
T Consensus 7 K~~aa~~A~~~v~~g-mviGlGTGST~~~fI~~Lg~~~~~e~~i~~V~T-----S~~t~~l~~~~GI~v~~l~~------ 74 (227)
T COG0120 7 KKAAAKAALEYVKDG-MVIGLGTGSTAAYFIEALGRRVKGELDIGGVPT-----SFQTEELARELGIPVSSLNE------ 74 (227)
T ss_pred HHHHHHHHHHHhcCC-CEEEEcCcHHHHHHHHHHHHhhccCccEEEEeC-----CHHHHHHHHHcCCeecCccc------
Confidence 345667788999986 47788999999999998753111 155555544 23556777789998877654
Q ss_pred hccccEEEEcceeeecCCceecccchHH
Q 008627 520 IHEVTRVFLGASSVLSNGTVCSRVGTAC 547 (559)
Q Consensus 520 M~~VdkVlLGAdaIlaNGsVvNKvGT~~ 547 (559)
...+|..|=|||-|-.++.++--=|.+.
T Consensus 75 ~~~lDl~iDGADEvd~~~~lIKGGGgAl 102 (227)
T COG0120 75 VDSLDLAIDGADEVDPNLNLIKGGGGAL 102 (227)
T ss_pred cCccceEeecccccCCCCCEEccChHHH
Confidence 3469999999999999988876666554
No 42
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=72.37 E-value=39 Score=29.66 Aligned_cols=89 Identities=18% Similarity=0.270 Sum_probs=56.7
Q ss_pred CCEEEEecCcH--HHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-----chHHHHhc--cccE
Q 008627 455 GDVLLTYGSSS--AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-----NAISYIIH--EVTR 525 (559)
Q Consensus 455 GdvILT~g~Ss--tV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D-----sAvs~iM~--~Vdk 525 (559)
|.++++++.+. -...+....++ ..|++|.+++ .++.|.+.||+|+.+.. ..+...++ ++|.
T Consensus 1 g~vl~s~~~~~k~~~~~~~~~l~~--~G~~l~aT~g--------T~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~ 70 (110)
T cd01424 1 GTVFISVADRDKPEAVEIAKRLAE--LGFKLVATEG--------TAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQL 70 (110)
T ss_pred CeEEEEEEcCcHhHHHHHHHHHHH--CCCEEEEchH--------HHHHHHHcCCeEEEEeecCCCchhHHHHHHcCCeEE
Confidence 34667676553 22334444444 5689998754 67889999999887743 33444444 6999
Q ss_pred EEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 526 VlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
|+--.+ +.- ...-.+.+=.+|-.||||+
T Consensus 71 vIn~~~-----~~~-~~~~~~~iRR~Av~~~ipl 98 (110)
T cd01424 71 VINTPS-----GKR-AIRDGFSIRRAALEYKVPY 98 (110)
T ss_pred EEECCC-----CCc-cCccHHHHHHHHHHhCCCE
Confidence 987542 221 1234578888999999995
No 43
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=71.98 E-value=1.1e+02 Score=34.12 Aligned_cols=110 Identities=15% Similarity=0.131 Sum_probs=57.6
Q ss_pred HHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCC-CCc-hHHHHHHHHHhCCCceEEEec------chHH
Q 008627 446 KHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR-PKH-EGKLLLRRLVRKGLSCTYTHI------NAIS 517 (559)
Q Consensus 446 ~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESR-P~~-EG~~LAk~L~~~GI~vTyI~D------sAvs 517 (559)
+..++++...+.+++-+.+..+..+| .+...|+ +|||.+.. +.+ ....+...+...|+.+.++.. ..+.
T Consensus 129 ~~lA~l~gae~alvv~sg~aAi~l~l-~~l~~Gd--eVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~~~~l~dle 205 (454)
T TIGR00474 129 GLLCELTGAEDALVVNNNAAAVLLAL-NTLAKGK--EVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTNRTHLKDYE 205 (454)
T ss_pred HHHHHHhCCCcEEEECCHHHHHHHHH-HHhCCcC--EEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCCCCCCHHHHH
Confidence 33344554445665555445554444 4554443 78887653 322 223445556778999888842 1233
Q ss_pred HHhcc-ccEEEEcceeeec-CCceecccchHHHHHHHhhCCCCC
Q 008627 518 YIIHE-VTRVFLGASSVLS-NGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 518 ~iM~~-VdkVlLGAdaIla-NGsVvNKvGT~~IALaAk~~~VPV 559 (559)
..+.+ ...|++-..+.+. +| ....+-...|+-+||+||++|
T Consensus 206 ~aI~~~T~lv~~~h~sN~~~~G-~~~~~dl~~I~~la~~~g~~v 248 (454)
T TIGR00474 206 DAITENTALLLKVHTSNYRIVG-FTEEVSIAELVALGREHGLPV 248 (454)
T ss_pred HhcCcCCEEEEEEccCcccccC-CCCCCCHHHHHHHHHHcCCeE
Confidence 33433 3333332222211 23 112345677889999999985
No 44
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=71.79 E-value=53 Score=36.22 Aligned_cols=128 Identities=20% Similarity=0.233 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC---------EEEEecCcHHHHHHHHHHHHhCCceEEE-EcCCCCCch
Q 008627 424 TLHSDIERFINEKIILADRVIVKHAVTKIRDGD---------VLLTYGSSSAVEMILQHAHELGKQFRVV-IVDSRPKHE 493 (559)
Q Consensus 424 ~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dGd---------vILT~g~SstV~~iL~~A~e~Gk~FrVi-VvESRP~~E 493 (559)
.+.+..+.|.+. +..-+......+.+++.+.+ .|..+.-...+.....-+..+-+. .|. +-+|--++-
T Consensus 183 ~~~~~~~~Y~~~-lm~p~~~~v~~~l~~~~~l~i~~IaP~HG~i~~~~~~~i~~~Y~~W~~~~~~~-~V~l~Y~smyg~T 260 (388)
T COG0426 183 ELLPDMRKYYAN-LMAPNARLVLWALKKIKLLKIEMIAPSHGPIWRGNPKEIVEAYRDWAEGQPKG-KVDLIYDSMYGNT 260 (388)
T ss_pred HHHHHHHHHHHH-hhcccHHHHHHHHhhhcccCccEEEcCCCceeeCCHHHHHHHHHHHHccCCcc-eEEEEEecccCCH
Confidence 566777777765 66667777777887777521 233333334555555444333334 344 445554444
Q ss_pred HH---HHHHHHHhCCCceEEEe--cchHHHHhc---cccEEEEcceeeecCCceecccchHHHHHHHhhC
Q 008627 494 GK---LLLRRLVRKGLSCTYTH--INAISYIIH---EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF 555 (559)
Q Consensus 494 G~---~LAk~L~~~GI~vTyI~--DsAvs~iM~---~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~ 555 (559)
+. .+++.|.+.|+.|.++- ++..+.++. +++.++||.-++ |+...-++++..--+.+...
T Consensus 261 ~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vvGsPT~--~~~~~p~i~~~l~~v~~~~~ 328 (388)
T COG0426 261 EKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLVVGSPTI--NGGAHPPIQTALGYVLALAP 328 (388)
T ss_pred HHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEEEecCcc--cCCCCchHHHHHHHHHhccC
Confidence 33 34677888999988876 456888887 689999999887 56688889998887777654
No 45
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=69.46 E-value=14 Score=34.88 Aligned_cols=6 Identities=0% Similarity=-0.545 Sum_probs=2.3
Q ss_pred eEEEec
Q 008627 508 CTYTHI 513 (559)
Q Consensus 508 vTyI~D 513 (559)
..+++|
T Consensus 92 ~v~~~D 97 (191)
T cd06436 92 IIAVID 97 (191)
T ss_pred EEEEEC
Confidence 334443
No 46
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=69.19 E-value=70 Score=30.36 Aligned_cols=36 Identities=11% Similarity=-0.019 Sum_probs=30.6
Q ss_pred hHHHHHHHHHhCCCceEEEecchHHHHhccccEEEE
Q 008627 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (559)
Q Consensus 493 EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlL 528 (559)
+=..+++.+.+.|+++..|+++.-+.+-+.+|.+|.
T Consensus 90 ~~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~ 125 (179)
T cd05005 90 SVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVV 125 (179)
T ss_pred HHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEE
Confidence 344678889999999999999988888888998775
No 47
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=68.77 E-value=1e+02 Score=31.50 Aligned_cols=48 Identities=13% Similarity=0.004 Sum_probs=37.7
Q ss_pred EEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcc
Q 008627 483 VVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (559)
Q Consensus 483 ViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGA 530 (559)
+++.-++-..+-..+++.+.+.|+++..|+++.-+.+-+.+|.+|.-.
T Consensus 192 I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~ 239 (292)
T PRK11337 192 LVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVICST 239 (292)
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEcC
Confidence 334445545566677888999999999999999999888999999743
No 48
>PRK02947 hypothetical protein; Provisional
Probab=67.11 E-value=1.5e+02 Score=30.14 Aligned_cols=39 Identities=8% Similarity=-0.089 Sum_probs=30.3
Q ss_pred CchHHHHHHHHHhCCCceEEEecchH-----------HHHhccccEEEEc
Q 008627 491 KHEGKLLLRRLVRKGLSCTYTHINAI-----------SYIIHEVTRVFLG 529 (559)
Q Consensus 491 ~~EG~~LAk~L~~~GI~vTyI~DsAv-----------s~iM~~VdkVlLG 529 (559)
..+=.++++.+.+.|+++..|+++.- +.+.+.+|.||.-
T Consensus 119 t~~~i~~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~~~ad~~l~~ 168 (246)
T PRK02947 119 NPVPIEMALEAKERGAKVIAVTSLAYSASVASRHSSGKRLAEVADVVLDN 168 (246)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCcccccccccCCCcCchhHhCCEEEEc
Confidence 33455778999999999999998763 5666779988853
No 49
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=66.61 E-value=1.3e+02 Score=31.46 Aligned_cols=101 Identities=14% Similarity=0.199 Sum_probs=52.7
Q ss_pred CCCEEEEecCcHHHHHHHHHHHH-hCCceEEEEcCCCCCchHH-HHHHHHHhCCCceEEEecc--------hHHHHhccc
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHE-LGKQFRVVIVDSRPKHEGK-LLLRRLVRKGLSCTYTHIN--------AISYIIHEV 523 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e-~Gk~FrViVvESRP~~EG~-~LAk~L~~~GI~vTyI~Ds--------Avs~iM~~V 523 (559)
...+++|.|.+..+..+|..... ....-.|++.+. .+.+. ...+.+...|+.+.++... .+-..+.+=
T Consensus 59 ~~~i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~--~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~~~ 136 (379)
T TIGR03402 59 PDEIIFTSGGTESDNTAIKSALAAQPEKRHIITTAV--EHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAITDD 136 (379)
T ss_pred CCeEEEeCcHHHHHHHHHHHHHHhcCCCCeEEEccc--ccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcCCC
Confidence 34678887777766666654432 111224444332 22232 3345566689999988532 233333322
Q ss_pred cEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 524 dkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+++++-...-...|.++. + ..|+-+|+++|++|
T Consensus 137 ~~lv~i~~~~n~tG~~~~-~--~~I~~l~~~~g~~v 169 (379)
T TIGR03402 137 TALVSVMWANNETGTIFP-I--EEIGEIAKERGALF 169 (379)
T ss_pred cEEEEEEcccCCeeeccc-H--HHHHHHHHHcCCEE
Confidence 333333333333444433 3 35888899999864
No 50
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=66.21 E-value=32 Score=31.52 Aligned_cols=73 Identities=18% Similarity=0.315 Sum_probs=55.4
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcc
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGA 530 (559)
.|..||.+|..++...++..+++.|-+ +|+|+ +|-......|++.+ .+..+.++....+...+.++|.||-..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~-~i~i~-nRt~~ra~~l~~~~--~~~~~~~~~~~~~~~~~~~~DivI~aT 83 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAK-EITIV-NRTPERAEALAEEF--GGVNIEAIPLEDLEEALQEADIVINAT 83 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSS-EEEEE-ESSHHHHHHHHHHH--TGCSEEEEEGGGHCHHHHTESEEEE-S
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCC-EEEEE-ECCHHHHHHHHHHc--CccccceeeHHHHHHHHhhCCeEEEec
Confidence 478999999999999999988877543 45555 35545566777777 556788888888888899999887653
No 51
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=65.22 E-value=88 Score=29.57 Aligned_cols=38 Identities=11% Similarity=-0.081 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcc
Q 008627 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (559)
Q Consensus 493 EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGA 530 (559)
+=.++++.+.+.|+++..|+++.-+.+-+.+|.+|.-.
T Consensus 87 ~~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~ 124 (179)
T TIGR03127 87 SLVTVAKKAKEIGATVAAITTNPESTLGKLADVVVEIP 124 (179)
T ss_pred HHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeC
Confidence 44567888999999999999999999999999988643
No 52
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=64.24 E-value=52 Score=29.18 Aligned_cols=85 Identities=18% Similarity=0.240 Sum_probs=51.5
Q ss_pred EEEEecCc--HHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---------c-hHHHHhc-cc
Q 008627 457 VLLTYGSS--SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---------N-AISYIIH-EV 523 (559)
Q Consensus 457 vILT~g~S--stV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D---------s-Avs~iM~-~V 523 (559)
++++++.. .-+..++...++ ..|++|.++. .++.|.+.||+|+.+.. . .+-.+.. ++
T Consensus 3 vlisv~~~dk~~~~~~a~~l~~--~G~~i~aT~g--------Ta~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~i 72 (116)
T cd01423 3 ILISIGSYSKPELLPTAQKLSK--LGYKLYATEG--------TADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKI 72 (116)
T ss_pred EEEecCcccchhHHHHHHHHHH--CCCEEEEccH--------HHHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCc
Confidence 34555543 223344444444 4589987754 68889999999988732 2 2333333 69
Q ss_pred cEEEE----cceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 524 TRVFL----GASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 524 dkVlL----GAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
|.||- |.+....+|..+ =..|-.++||+
T Consensus 73 dlVIn~~~~~~~~~~~~~~~i--------Rr~Av~~~ip~ 104 (116)
T cd01423 73 DLVINLPSNRGKRVLDNDYVM--------RRAADDFAVPL 104 (116)
T ss_pred eEEEECCCCCCCccccCcEee--------ehhhHhhCCcc
Confidence 99987 555545566444 34577777774
No 53
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=63.89 E-value=77 Score=28.17 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=46.8
Q ss_pred CceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec------c-hHHHHhc--cccEEEEcceeeecCCce--ecccchHH
Q 008627 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI------N-AISYIIH--EVTRVFLGASSVLSNGTV--CSRVGTAC 547 (559)
Q Consensus 479 k~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D------s-Avs~iM~--~VdkVlLGAdaIlaNGsV--vNKvGT~~ 547 (559)
..|++|.+++ .++.|.+.||+|+.+.. . .+..+.. ++|+||-= .+|.- -.....+.
T Consensus 24 ~G~~i~AT~g--------Ta~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~-----~~~~~~~~~~~dg~~ 90 (112)
T cd00532 24 DGFPLFATGG--------TSRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINL-----RDPRRDRCTDEDGTA 90 (112)
T ss_pred CCCEEEECcH--------HHHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEc-----CCCCcccccCCChHH
Confidence 5689998854 67888899999998732 2 4444444 58888653 23332 12555678
Q ss_pred HHHHHhhCCCCC
Q 008627 548 VAMVAYGFHIPV 559 (559)
Q Consensus 548 IALaAk~~~VPV 559 (559)
|=-+|-.+|||+
T Consensus 91 iRR~A~~~~Ip~ 102 (112)
T cd00532 91 LLRLARLYKIPV 102 (112)
T ss_pred HHHHHHHcCCCE
Confidence 888899999995
No 54
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=63.47 E-value=12 Score=36.67 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=31.9
Q ss_pred HHHHHHHhCCCceEEEecchHHH-HhccccEEEEccee
Q 008627 496 LLLRRLVRKGLSCTYTHINAISY-IIHEVTRVFLGASS 532 (559)
Q Consensus 496 ~LAk~L~~~GI~vTyI~DsAvs~-iM~~VdkVlLGAda 532 (559)
.+|..|.+.|++|++...+++.. -+.+.|+|+|||..
T Consensus 20 ~iA~~L~e~g~qvdi~dl~~~~~~~l~~ydavVIgAsI 57 (175)
T COG4635 20 YIASHLRESGIQVDIQDLHAVEEPALEDYDAVVIGASI 57 (175)
T ss_pred HHHHHhhhcCCeeeeeehhhhhccChhhCceEEEecch
Confidence 45778888999999999999987 57789999999964
No 55
>PRK13938 phosphoheptose isomerase; Provisional
Probab=61.45 E-value=1.8e+02 Score=28.92 Aligned_cols=38 Identities=3% Similarity=-0.170 Sum_probs=30.5
Q ss_pred CchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEE
Q 008627 491 KHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (559)
Q Consensus 491 ~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlL 528 (559)
..+=.++++.+.+.|+++..|+.+.-+.+.+.+|.+|.
T Consensus 126 t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~ 163 (196)
T PRK13938 126 SMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLIN 163 (196)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEE
Confidence 33445668888899999999998888888888888774
No 56
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=61.31 E-value=14 Score=31.82 Aligned_cols=76 Identities=17% Similarity=0.209 Sum_probs=47.5
Q ss_pred HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEE----ecc---h----HHHHhc--cccEEEEcceeeec
Q 008627 469 MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT----HIN---A----ISYIIH--EVTRVFLGASSVLS 535 (559)
Q Consensus 469 ~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI----~Ds---A----vs~iM~--~VdkVlLGAdaIla 535 (559)
.+.+...+.| |++|.+++ .++.|.++||+|.-+ ... . +...|+ ++|+||.= .
T Consensus 4 ~~a~~l~~lG--~~i~AT~g--------Ta~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~-----~ 68 (95)
T PF02142_consen 4 PLAKRLAELG--FEIYATEG--------TAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINT-----P 68 (95)
T ss_dssp HHHHHHHHTT--SEEEEEHH--------HHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE------
T ss_pred HHHHHHHHCC--CEEEEChH--------HHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEe-----C
Confidence 4455555555 99998864 689999999994443 333 1 555555 69988752 2
Q ss_pred CCceecc-cchHHHHHHHhhCCCCC
Q 008627 536 NGTVCSR-VGTACVAMVAYGFHIPV 559 (559)
Q Consensus 536 NGsVvNK-vGT~~IALaAk~~~VPV 559 (559)
++.--.. ...+.+--+|-.++||+
T Consensus 69 ~~~~~~~~~dg~~irr~a~~~~Ip~ 93 (95)
T PF02142_consen 69 YPFSDQEHTDGYKIRRAAVEYNIPL 93 (95)
T ss_dssp -THHHHHTHHHHHHHHHHHHTTSHE
T ss_pred CCCcccccCCcHHHHHHHHHcCCCC
Confidence 2222222 36788889999999984
No 57
>PLN02651 cysteine desulfurase
Probab=60.40 E-value=1.1e+02 Score=32.03 Aligned_cols=100 Identities=13% Similarity=0.212 Sum_probs=50.7
Q ss_pred CCCEEEEecCcHHHHHHHHHHHH--hCCceEEEEcCCCCCchHH-HHHHHHHhCCCceEEEecc--------hHHHHhc-
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGK-LLLRRLVRKGLSCTYTHIN--------AISYIIH- 521 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e--~Gk~FrViVvESRP~~EG~-~LAk~L~~~GI~vTyI~Ds--------Avs~iM~- 521 (559)
.+++++|-|.|..+..+|..+.. .++.-+|++.+.. +.+. .....|...|+++.++... .+-..+.
T Consensus 60 ~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~--h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~ 137 (364)
T PLN02651 60 PKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTE--HKCVLDSCRHLQQEGFEVTYLPVKSDGLVDLDELAAAIRP 137 (364)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccc--cHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence 44677777666655444444322 1233467765432 2221 1234455679988887531 2333343
Q ss_pred cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 522 ~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+...|++ .+.-...|.+.. -..|+-+||.+|++|
T Consensus 138 ~t~lv~v-~~~~n~tG~~~~---l~~I~~~~~~~g~~~ 171 (364)
T PLN02651 138 DTALVSV-MAVNNEIGVIQP---VEEIGELCREKKVLF 171 (364)
T ss_pred CcEEEEE-ECCCCCceeccc---HHHHHHHHHHcCCEE
Confidence 3333433 222223443332 235788899998764
No 58
>PRK15482 transcriptional regulator MurR; Provisional
Probab=60.30 E-value=1.4e+02 Score=30.56 Aligned_cols=41 Identities=15% Similarity=-0.074 Sum_probs=34.1
Q ss_pred CCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEc
Q 008627 489 RPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (559)
Q Consensus 489 RP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLG 529 (559)
+-..+-.++++.+.+.|+++..|+++.-+.+-+.+|.+|.-
T Consensus 193 g~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~ 233 (285)
T PRK15482 193 GSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDT 233 (285)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEc
Confidence 33345567788999999999999999999998899999874
No 59
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=59.54 E-value=25 Score=40.58 Aligned_cols=103 Identities=16% Similarity=0.149 Sum_probs=55.4
Q ss_pred ccCCCEEEEecCcHHH-HHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhC-----C----CceEEE-ec----chH
Q 008627 452 IRDGDVLLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK-----G----LSCTYT-HI----NAI 516 (559)
Q Consensus 452 I~dGdvILT~g~SstV-~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~-----G----I~vTyI-~D----sAv 516 (559)
.++|.+||+.|-++-+ ..+++.+.+.| ++|+++. |-......++..|.+. | ..+.++ .| ..+
T Consensus 77 ~~~gKvVLVTGATGgIG~aLAr~LLk~G--~~Vval~-Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 77 TKDEDLAFVAGATGKVGSRTVRELLKLG--FRVRAGV-RSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCC--CeEEEEe-CCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 4578899999988766 45555565655 5676663 3222333444444331 2 123332 12 344
Q ss_pred HHHhccccEEEEcceeeecC------CceecccchHHHHHHHhhCCC
Q 008627 517 SYIIHEVTRVFLGASSVLSN------GTVCSRVGTACVAMVAYGFHI 557 (559)
Q Consensus 517 s~iM~~VdkVlLGAdaIlaN------GsVvNKvGT~~IALaAk~~~V 557 (559)
...+..+|.||.-+-....+ -.-+|..|+..+.-+|+..++
T Consensus 154 ~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agV 200 (576)
T PLN03209 154 GPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKV 200 (576)
T ss_pred HHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCC
Confidence 45567788877654221100 011355678777777766654
No 60
>PRK04311 selenocysteine synthase; Provisional
Probab=59.29 E-value=2.3e+02 Score=31.86 Aligned_cols=110 Identities=17% Similarity=0.163 Sum_probs=57.1
Q ss_pred HHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCC-CC-chHHHHHHHHHhCCCceEEEecc------hHH
Q 008627 446 KHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR-PK-HEGKLLLRRLVRKGLSCTYTHIN------AIS 517 (559)
Q Consensus 446 ~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESR-P~-~EG~~LAk~L~~~GI~vTyI~Ds------Avs 517 (559)
+..++++...+.++|-+.+..+..+| .+...| -+|||.+.. +. .....+-..+...|+.+.++... .+.
T Consensus 134 ~~lA~l~Gae~a~vv~sgtaAl~l~l-~~l~~G--deVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~~t~~~dle 210 (464)
T PRK04311 134 ALLCALTGAEDALVVNNNAAAVLLAL-NALAAG--KEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTNRTHLRDYE 210 (464)
T ss_pred HHHHHHhCCCeEEEECCHHHHHHHHH-HHhCCC--CEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCCCCCCHHHHH
Confidence 33344554446666666665655555 445434 378887542 21 11233444566789887777421 233
Q ss_pred HHhccccEEEEccee-ee-cCCceecccchHHHHHHHhhCCCCC
Q 008627 518 YIIHEVTRVFLGASS-VL-SNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 518 ~iM~~VdkVlLGAda-Il-aNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
..+.+=+++++-.+. -+ -.| ....+--..|+-+||.||+||
T Consensus 211 ~aI~~~TklV~~vh~sN~~i~G-~~~~~dl~eI~~lak~~gi~v 253 (464)
T PRK04311 211 QAINENTALLLKVHTSNYRIEG-FTKEVSLAELAALGKEHGLPV 253 (464)
T ss_pred HhcCccCeEEEEEcCCCccccc-cCCcCCHHHHHHHHHHcCCeE
Confidence 344433444333322 11 012 112344566888999999985
No 61
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=59.09 E-value=1e+02 Score=31.86 Aligned_cols=96 Identities=19% Similarity=0.160 Sum_probs=47.6
Q ss_pred CEEEEecC-cHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------chHHHHhc--ccc
Q 008627 456 DVLLTYGS-SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EVT 524 (559)
Q Consensus 456 dvILT~g~-SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D--------sAvs~iM~--~Vd 524 (559)
..++..+. +..+..++......| -+|++.+ +.+-+..+...+...|.+++++.. ..+...+. +..
T Consensus 51 ~~~~~~~~~t~al~~~~~~~~~~g--~~vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~~ 126 (356)
T cd06451 51 LTFLLSGSGTGAMEAALSNLLEPG--DKVLVGV--NGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDIK 126 (356)
T ss_pred CEEEEecCcHHHHHHHHHHhCCCC--CEEEEec--CCchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhccCCC
Confidence 44444443 444444443332333 3566654 222233234445567888777742 23333332 454
Q ss_pred EEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 525 kVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.|++ .+.-...|.+.. -..|+-+|+++|+++
T Consensus 127 ~v~i-~~~~~~~G~~~~---~~~i~~~a~~~~~~l 157 (356)
T cd06451 127 AVTL-THNETSTGVLNP---LEGIGALAKKHDALL 157 (356)
T ss_pred EEEE-eccCCCcccccC---HHHHHHHHHhcCCEE
Confidence 5554 333344555443 344777888888764
No 62
>KOG3075 consensus Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=58.86 E-value=36 Score=35.53 Aligned_cols=94 Identities=18% Similarity=0.101 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHH---HHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHH
Q 008627 441 DRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHA---HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS 517 (559)
Q Consensus 441 ~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A---~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs 517 (559)
.+..+.++.+....+-.|+=+|.-+||...+... +.+|..-.|+.+-+ +.+.+..+.+.||++.+...-
T Consensus 28 kr~Aa~~avd~~~k~g~ViGiGsGstv~~~v~~i~q~l~~~~l~~vvgVPt-----s~~s~q~~~~~gi~l~~~d~h--- 99 (261)
T KOG3075|consen 28 KRLAAYKAVDNYVKNGMVIGIGSGSTVVYAVDRIGQLLFDGDLGNVVGVPT-----SFRSAQLALEYGIPLSDLDSH--- 99 (261)
T ss_pred HHHHHhhhhhhhccCCeEEEecCccHHHHHHHHHHHHhcCCCcCceEeccc-----chhhHHHHHhcCCccccCCCC---
Confidence 3444555665555566788888888887666655 55566667777743 455678888999998887652
Q ss_pred HHhccccEEEEcceeeecCCceecccch
Q 008627 518 YIIHEVTRVFLGASSVLSNGTVCSRVGT 545 (559)
Q Consensus 518 ~iM~~VdkVlLGAdaIlaNGsVvNKvGT 545 (559)
..+|..|=|||-+-+|..++---|-
T Consensus 100 ---p~iDlaidgADEvd~nln~ikggGg 124 (261)
T KOG3075|consen 100 ---PVIDLAIDGADEVDENLNLIKGGGG 124 (261)
T ss_pred ---ceeEEEecCchhhCcCcceEEeccc
Confidence 4799999999999999887654443
No 63
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=58.56 E-value=1.1e+02 Score=25.55 Aligned_cols=64 Identities=19% Similarity=0.280 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCceEEEEcCCCCCc-----------hHHHHHHHHH----hCCCceEEEe--cchHHHHhc-----cccEE
Q 008627 469 MILQHAHELGKQFRVVIVDSRPKH-----------EGKLLLRRLV----RKGLSCTYTH--INAISYIIH-----EVTRV 526 (559)
Q Consensus 469 ~iL~~A~e~Gk~FrViVvESRP~~-----------EG~~LAk~L~----~~GI~vTyI~--DsAvs~iM~-----~VdkV 526 (559)
.++..|...+.++.++.+...+.. +.++....+. ..|+++++.. ......++. ++|.|
T Consensus 18 ~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dlv 97 (130)
T cd00293 18 WAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGDPAEAILEAAEELGADLI 97 (130)
T ss_pred HHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHcCCCEE
Confidence 333334445667776655443322 3444444444 3588776653 322233333 47999
Q ss_pred EEccee
Q 008627 527 FLGASS 532 (559)
Q Consensus 527 lLGAda 532 (559)
++|+..
T Consensus 98 vig~~~ 103 (130)
T cd00293 98 VMGSRG 103 (130)
T ss_pred EEcCCC
Confidence 999864
No 64
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=58.46 E-value=1.3e+02 Score=31.12 Aligned_cols=101 Identities=17% Similarity=0.202 Sum_probs=50.2
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhC--C-ceEEEEcCC-CCCchHHHHHHHHHhCCCceEEEecc--------hHHHHhc
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELG--K-QFRVVIVDS-RPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH 521 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~G--k-~FrViVvES-RP~~EG~~LAk~L~~~GI~vTyI~Ds--------Avs~iM~ 521 (559)
..++++|-|.+..+..+|......+ + +-.|++.+. .|.+- .....+...|+++.++... .+-..+.
T Consensus 59 ~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~--~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~ 136 (353)
T TIGR03235 59 TEEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVL--EPIRALERNGFTVTYLPVDESGRIDVDELADAIR 136 (353)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHH--HHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCC
Confidence 3467777666655555554433211 1 135555532 22221 1234455679998887632 2323332
Q ss_pred cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 522 ~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+-+++++=.+.-...|.+.. -..|+-+|+++|++|
T Consensus 137 ~~~~lv~~~~~~n~tG~~~~---~~~I~~l~~~~~~~~ 171 (353)
T TIGR03235 137 PDTLLVSIMHVNNETGSIQP---IREIAEVLEAHEAFF 171 (353)
T ss_pred CCCEEEEEEcccCCceeccC---HHHHHHHHHHcCCEE
Confidence 22233332233333454433 256888899998864
No 65
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=57.59 E-value=1.2e+02 Score=28.92 Aligned_cols=99 Identities=16% Similarity=0.167 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhcc--cCCCEEEEecCcH----HHHHHHHHHHHhCCceEEEEcCCCCCc--hHHHHHHHHHhCCCce
Q 008627 437 IILADRVIVKHAVTKI--RDGDVLLTYGSSS----AVEMILQHAHELGKQFRVVIVDSRPKH--EGKLLLRRLVRKGLSC 508 (559)
Q Consensus 437 I~~A~e~Ia~~Aa~~I--~dGdvILT~g~Ss----tV~~iL~~A~e~Gk~FrViVvESRP~~--EG~~LAk~L~~~GI~v 508 (559)
++.|...+++...+++ ..+..|+.+|-++ --..+-+++++.|.+..|+++.-.... +-+...+.+.+.|+++
T Consensus 5 ME~Ag~~~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ 84 (169)
T PF03853_consen 5 MENAGRAIAELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKI 84 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EE
T ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcE
Confidence 4457788899888888 7778888887662 223345555667877777666443332 3334467777888876
Q ss_pred EEE-ecchHHHHhccccEEEEcceeeecCCc
Q 008627 509 TYT-HINAISYIIHEVTRVFLGASSVLSNGT 538 (559)
Q Consensus 509 TyI-~DsAvs~iM~~VdkVlLGAdaIlaNGs 538 (559)
... .+......+..+|.|| |+|+-.|.
T Consensus 85 ~~~~~~~~~~~~~~~~dlII---Dal~G~G~ 112 (169)
T PF03853_consen 85 IELDSDEDLSEALEPADLII---DALFGTGF 112 (169)
T ss_dssp ESSCCGSGGGHHGSCESEEE---EES-STTG
T ss_pred eeccccchhhcccccccEEE---EecccCCC
Confidence 653 3455556677888886 66777763
No 66
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.54 E-value=76 Score=34.87 Aligned_cols=91 Identities=12% Similarity=0.061 Sum_probs=54.5
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceeee
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIl 534 (559)
+..|+.+|...+=..+.+.+++.| +.|++.|.++...=..+..+|.+.||.+.+-.+. ...+.+.|.||+....-.
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G--~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~--~~~~~~~dlVV~Spgi~~ 89 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLG--AKVTAFDKKSEEELGEVSNELKELGVKLVLGENY--LDKLDGFDVIFKTPSMRI 89 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCC--CEEEEECCCCCccchHHHHHHHhCCCEEEeCCCC--hHHhccCCEEEECCCCCC
Confidence 456778776655444444455545 6899999876433223345588889876654332 233477899888643222
Q ss_pred cCCceecccchHHHHHHHhhCCCCC
Q 008627 535 SNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 535 aNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+ ..+-..|++.+|||
T Consensus 90 -~---------~p~~~~a~~~~i~i 104 (458)
T PRK01710 90 -D---------SPELVKAKEEGAYI 104 (458)
T ss_pred -C---------chHHHHHHHcCCcE
Confidence 2 24556677777775
No 67
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=56.84 E-value=84 Score=34.65 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=9.5
Q ss_pred HHHHHHHhhCCCCC
Q 008627 546 ACVAMVAYGFHIPV 559 (559)
Q Consensus 546 ~~IALaAk~~~VPV 559 (559)
..|+-+|+++|++|
T Consensus 169 ~~I~~la~~~gi~l 182 (433)
T PRK08134 169 PTVAAIAHEAGVPL 182 (433)
T ss_pred HHHHHHHHHcCCEE
Confidence 45677777777764
No 68
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=56.51 E-value=42 Score=29.07 Aligned_cols=69 Identities=23% Similarity=0.183 Sum_probs=43.9
Q ss_pred EEEcCCCCCchHHHHHHHHHhCCCceEEE------ecch--HHHHhccccEEEEcceeeecCCceecccchHHHHHHHhh
Q 008627 483 VVIVDSRPKHEGKLLLRRLVRKGLSCTYT------HINA--ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG 554 (559)
Q Consensus 483 ViVvESRP~~EG~~LAk~L~~~GI~vTyI------~DsA--vs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~ 554 (559)
|.|+-.+..+++ .+-..|.+.|...... .... +...++++|.||+=.|. ++..-+..+--.|+.
T Consensus 2 vliVGG~~~~~~-~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~-------vsH~~~~~vk~~akk 73 (97)
T PF10087_consen 2 VLIVGGREDRER-RYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDY-------VSHNAMWKVKKAAKK 73 (97)
T ss_pred EEEEcCCcccHH-HHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCC-------cChHHHHHHHHHHHH
Confidence 344444333332 2455566677777777 4444 66667778999876654 445556677778999
Q ss_pred CCCCC
Q 008627 555 FHIPV 559 (559)
Q Consensus 555 ~~VPV 559 (559)
+++||
T Consensus 74 ~~ip~ 78 (97)
T PF10087_consen 74 YGIPI 78 (97)
T ss_pred cCCcE
Confidence 99986
No 69
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=56.15 E-value=1.8e+02 Score=32.51 Aligned_cols=26 Identities=8% Similarity=0.112 Sum_probs=22.7
Q ss_pred cccEEEEcce-eeecCCceecccchHH
Q 008627 522 EVTRVFLGAS-SVLSNGTVCSRVGTAC 547 (559)
Q Consensus 522 ~VdkVlLGAd-aIlaNGsVvNKvGT~~ 547 (559)
.+|.-|.||+ +|..+|++++-.|...
T Consensus 181 ~advgit~an~aiAetGtlv~~~~~gn 207 (432)
T TIGR00273 181 SADIGISGCNFAIAETGSIFLVENEGN 207 (432)
T ss_pred cCCEEEeccchHhhcCceEEEecCCCC
Confidence 6999999999 9999999998776654
No 70
>PRK05839 hypothetical protein; Provisional
Probab=56.12 E-value=94 Score=32.85 Aligned_cols=103 Identities=12% Similarity=0.069 Sum_probs=55.1
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecch-HHHH-------hccc
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA-ISYI-------IHEV 523 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsA-vs~i-------M~~V 523 (559)
+...++++|.|.+..+..++......+.. ..++++ .|.+.+...+ +...|+++..+.... =++. .+++
T Consensus 81 ~~~~~I~it~G~~~al~~~~~~~~~~~~g-d~vlv~-~P~y~~~~~~--~~~~g~~v~~v~~~~~~~~~~d~~~~~~~~~ 156 (374)
T PRK05839 81 LKENELIPTFGTREVLFNFPQFVLFDKQN-PTIAYP-NPFYQIYEGA--AIASRAKVLLMPLTKENDFTPSLNEKELQEV 156 (374)
T ss_pred CCcceEEEecCcHHHHHHHHHHHhcCCCC-CEEEEC-CCCchhhHHH--HHhcCCEEEEeecccccCCcCCcchhhhccc
Confidence 55667888888887765554433211111 345555 3777666443 345788888876432 1111 2344
Q ss_pred cEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 524 dkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
..|+|- .-=-+.|.++++-=-..++-.|+.+|+.+
T Consensus 157 k~v~i~-nP~NPTG~~~s~~~l~~i~~~~~~~~~~i 191 (374)
T PRK05839 157 DLVILN-SPNNPTGRTLSLEELIEWVKLALKHDFIL 191 (374)
T ss_pred cEEEEe-CCCCCcCcccCHHHHHHHHHHHHHcCCEE
Confidence 444441 11122255555444456666788888753
No 71
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=55.28 E-value=72 Score=33.08 Aligned_cols=99 Identities=14% Similarity=0.107 Sum_probs=60.5
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-chHHHHhccccEEEEcc
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-NAISYIIHEVTRVFLGA 530 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D-sAvs~iM~~VdkVlLGA 530 (559)
+....+++|.|.+..+.. +..+...| +|++. .|.+.+... .+...|+++.++.| ..+-..+++.+.|++ .
T Consensus 62 ~~~~~i~~t~G~~~~i~~-~~~~l~~g---~vl~~--~p~y~~~~~--~~~~~g~~~~~~~d~~~l~~~~~~~~~v~i-~ 132 (330)
T TIGR01140 62 LPAASVLPVNGAQEAIYL-LPRLLAPG---RVLVL--APTYSEYAR--AWRAAGHEVVELPDLDRLPAALEELDVLVL-C 132 (330)
T ss_pred CChhhEEECCCHHHHHHH-HHHHhCCC---eEEEe--CCCcHHHHH--HHHHcCCEEEEeCCHHHHHhhcccCCEEEE-e
Confidence 334577888777766554 44444333 45554 577766543 35578999988874 334444566666655 3
Q ss_pred eeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 531 daIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
..--.-|.++..-.-..++-+|+.++++|
T Consensus 133 ~p~NPtG~~~~~~~~~~l~~~a~~~~~~i 161 (330)
T TIGR01140 133 NPNNPTGRLIPPETLLALAARLRARGGWL 161 (330)
T ss_pred CCCCCCCCCCCHHHHHHHHHHhHhcCCEE
Confidence 33235566666655666777888888754
No 72
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=55.00 E-value=91 Score=32.92 Aligned_cols=101 Identities=18% Similarity=0.133 Sum_probs=67.3
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceeeec
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIla 535 (559)
|..+.+=....|..+|+++.+.|.+.-||+.+.-+..+.++|.+...+.|+ .++=-|.++.+-........-......
T Consensus 67 DlAvi~vp~~~v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~gi--rvlGPNc~Gi~~~~~~~~~~~~~~~~~ 144 (291)
T PRK05678 67 NASVIYVPPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKT--RLIGPNCPGIITPGECKIGIMPGHIHK 144 (291)
T ss_pred CEEEEEcCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEECCCCCcccccccceeeecCCCCCC
Confidence 666666677788899999999898888888888775556677777777765 345455555554443322221222233
Q ss_pred CC--ceecccchHHHHHH--HhhCCCC
Q 008627 536 NG--TVCSRVGTACVAMV--AYGFHIP 558 (559)
Q Consensus 536 NG--sVvNKvGT~~IALa--Ak~~~VP 558 (559)
-| ++++..|+...+++ ++..++-
T Consensus 145 ~G~valiSQSGal~~~~~~~~~~~giG 171 (291)
T PRK05678 145 KGRVGVVSRSGTLTYEAVAQLTDLGFG 171 (291)
T ss_pred CCCEEEEeccHHHHHHHHHHHHHcCCC
Confidence 56 48999999888876 5555553
No 73
>PRK07582 cystathionine gamma-lyase; Validated
Probab=54.63 E-value=91 Score=33.24 Aligned_cols=97 Identities=15% Similarity=0.090 Sum_probs=52.6
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH-HHHH-HHHhCCCceEEEecchHH-HHhccccEEEEcc
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLR-RLVRKGLSCTYTHINAIS-YIIHEVTRVFLGA 530 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~-~LAk-~L~~~GI~vTyI~DsAvs-~iM~~VdkVlLGA 530 (559)
..+.|++-+-+..+..+|......| -+|++.+ |.+.+. .+++ .|...|+++.++...... .++++++.|++-
T Consensus 65 ~~~~v~~~sG~~Ai~~~l~all~~G--d~Vl~~~--~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~~~~~~t~lV~le- 139 (366)
T PRK07582 65 GAEALVFPSGMAAITAVLRALLRPG--DTVVVPA--DGYYQVRALAREYLAPLGVTVREAPTAGMAEAALAGADLVLAE- 139 (366)
T ss_pred CCCEEEECCHHHHHHHHHHHhcCCC--CEEEEeC--CCcHhHHHHHHHHHhcCeEEEEEECCCChHHHhccCceEEEEE-
Confidence 3466766655655555554433333 4666653 555443 3444 456679999888754322 444566666653
Q ss_pred eeee-cCCceecccchHHHHHHHhhCCCCC
Q 008627 531 SSVL-SNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 531 daIl-aNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
... ..|.+ .--..|+-+|+.+|+.+
T Consensus 140 -~p~NPtg~v---~di~~I~~~a~~~g~~l 165 (366)
T PRK07582 140 -TPSNPGLDV---CDLAALAAAAHAAGALL 165 (366)
T ss_pred -CCCCCCCCc---cCHHHHHHHHHHcCCEE
Confidence 211 11222 22356777788887753
No 74
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=54.47 E-value=84 Score=33.27 Aligned_cols=99 Identities=13% Similarity=0.057 Sum_probs=59.9
Q ss_pred HHHHHhccc--CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhcc
Q 008627 445 VKHAVTKIR--DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE 522 (559)
Q Consensus 445 a~~Aa~~I~--dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~ 522 (559)
+..+.+++. +-.+|..+|.......-++........-+|+|. +|-...-..++.++.+.|+++....+. ..++++
T Consensus 116 salaa~~La~~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~-~r~~~~~~~~~~~~~~~g~~v~~~~~~--~eav~~ 192 (325)
T TIGR02371 116 GGVAAKYLARKDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVY-CRTPSTREKFALRASDYEVPVRAATDP--REAVEG 192 (325)
T ss_pred HHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEE-CCCHHHHHHHHHHHHhhCCcEEEeCCH--HHHhcc
Confidence 334445553 346777788776555434332222222355555 443333456788888788877765433 355689
Q ss_pred ccEEEEcc---e-----eeecCCceecccchH
Q 008627 523 VTRVFLGA---S-----SVLSNGTVCSRVGTA 546 (559)
Q Consensus 523 VdkVlLGA---d-----aIlaNGsVvNKvGT~ 546 (559)
+|.|+.-. + .++..|..+|-+|++
T Consensus 193 aDiVitaT~s~~P~~~~~~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 193 CDILVTTTPSRKPVVKADWVSEGTHINAIGAD 224 (325)
T ss_pred CCEEEEecCCCCcEecHHHcCCCCEEEecCCC
Confidence 99998755 2 245789999999975
No 75
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=54.38 E-value=86 Score=33.63 Aligned_cols=101 Identities=16% Similarity=0.254 Sum_probs=53.1
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc----------hHHHHhc
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH 521 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds----------Avs~iM~ 521 (559)
+....+++|.|.+..+..++....+.|. +|++. .|.+.+... .+...|+++.++... .+-..+.
T Consensus 102 ~~~~~i~it~G~~~al~~~~~~~~~~gd--~vlv~--~P~y~~~~~--~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~ 175 (412)
T PTZ00433 102 IKKDNVVLCSGVSHAILMALTALCDEGD--NILVP--APGFPHYET--VCKAYGIEMRFYNCRPEKDWEADLDEIRRLVD 175 (412)
T ss_pred CChhhEEEeCChHHHHHHHHHHhcCCCC--EEEEc--cCCcccHHH--HHHHcCCEEEEEecCccccCcCCHHHHHHHhc
Confidence 5556788888888877666655433332 44444 366655432 345578888777531 1222222
Q ss_pred -cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 522 -~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
++.+|++ +.-=-+.|.++++-=-..|+-+|+++++.|
T Consensus 176 ~~~~~i~~-~~p~NPtG~~~s~~~~~~l~~~a~~~~~~i 213 (412)
T PTZ00433 176 DRTKALIM-TNPSNPCGSNFSRKHVEDIIRLCEELRLPL 213 (412)
T ss_pred cCceEEEE-eCCCCCCCcccCHHHHHHHHHHHHHcCCeE
Confidence 3444443 221122344444333455666778888753
No 76
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=53.71 E-value=42 Score=35.72 Aligned_cols=52 Identities=17% Similarity=0.288 Sum_probs=31.3
Q ss_pred HHHHHhCCCceEEEecc--------hHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhh
Q 008627 498 LRRLVRKGLSCTYTHIN--------AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG 554 (559)
Q Consensus 498 Ak~L~~~GI~vTyI~Ds--------Avs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~ 554 (559)
++.|.+.||+|++|... ++-...++..+|+ ++.++.+..-.|...++.++.+
T Consensus 220 a~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t~~vv-----~vEE~~~~gGlG~~va~~l~e~ 279 (327)
T CHL00144 220 VKVLVEKGYDPEIIDLISLKPLDLGTISKSVKKTHKVL-----IVEECMKTGGIGAELIAQINEH 279 (327)
T ss_pred HHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHhhCcEE-----EEECCCCCCCHHHHHHHHHHHh
Confidence 34455566666665432 2333444555554 4667777777888888877766
No 77
>PLN02409 serine--glyoxylate aminotransaminase
Probab=53.44 E-value=84 Score=33.75 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=26.0
Q ss_pred EEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 008627 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 458 ILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~ 512 (559)
|+|-+-+..++.++....+.| -+|+|.+ +.+-+..++..+...|+++.++.
T Consensus 64 i~~~~gt~a~~~a~~~~~~~G--d~Vlv~~--~~~~~~~~~~~~~~~g~~v~~v~ 114 (401)
T PLN02409 64 IFPTTGTGAWESALTNTLSPG--DKVVSFR--IGQFSLLWIDQMQRLNFDVDVVE 114 (401)
T ss_pred EEeCCcHHHHHHHHHhcCCCC--CEEEEeC--CCchhHHHHHHHHHcCCceEEEE
Confidence 333333333344444433333 3566665 44445555555556677777775
No 78
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=52.43 E-value=91 Score=32.84 Aligned_cols=101 Identities=16% Similarity=0.149 Sum_probs=66.7
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceeeec
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIla 535 (559)
|..+.+-....|..+|.++.+.|.+.-|++.+.-+....++|.+...+.|+ .++=-|.++.+-....+...-......
T Consensus 65 Dlavi~vpa~~v~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~gi--rilGPNc~Giin~~~~~~~~~~~~~~~ 142 (286)
T TIGR01019 65 NASVIFVPAPFAADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGT--RLIGPNCPGIITPGECKIGIMPGHIHK 142 (286)
T ss_pred CEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEECCCCceEEcccccceeeccccCCC
Confidence 777777778888899999999898888888887766555677666666655 444445555544433322222222333
Q ss_pred CCc--eecccchHHHHHH--HhhCCCC
Q 008627 536 NGT--VCSRVGTACVAMV--AYGFHIP 558 (559)
Q Consensus 536 NGs--VvNKvGT~~IALa--Ak~~~VP 558 (559)
-|. +++..|+...+++ +.+.++-
T Consensus 143 ~G~ValiSQSG~l~~~~~~~a~~~giG 169 (286)
T TIGR01019 143 PGNVGIVSRSGTLTYEAVHQLTKAGFG 169 (286)
T ss_pred CCcEEEEeccHHHHHHHHHHHHHcCCC
Confidence 563 7999998887765 5555553
No 79
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=51.62 E-value=58 Score=34.93 Aligned_cols=93 Identities=19% Similarity=0.186 Sum_probs=63.9
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcce--ee
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGAS--SV 533 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAd--aI 533 (559)
|..+.+=-...|..++.+|.+.|.+.-|+++|.-|...+.++.+.+. ..-.+.+|=-|..+.+-+.. .++|.. -+
T Consensus 90 D~avI~VPa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~-~~~g~rliGPNc~Gii~p~~--~~~gi~p~~~ 166 (317)
T PTZ00187 90 DASVIYVPPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALL-SQNKTRLIGPNCPGIIKPGE--CKIGIMPGHI 166 (317)
T ss_pred CEEEEecCHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHh-hcCCCEEECCCCceEEcchh--hccccCCcCC
Confidence 66666666788888999999999999999999999988888774443 22334666666666665542 223321 13
Q ss_pred ecCC--ceecccchHHHHHH
Q 008627 534 LSNG--TVCSRVGTACVAMV 551 (559)
Q Consensus 534 laNG--sVvNKvGT~~IALa 551 (559)
+.-| +++++.||....++
T Consensus 167 ~~~G~VgiVSqSGtl~~ei~ 186 (317)
T PTZ00187 167 HKKGKIGIVSRSGTLTYEAV 186 (317)
T ss_pred CCCCCEEEEeCCHHHHHHHH
Confidence 3456 58999998766654
No 80
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=51.52 E-value=2.4e+02 Score=30.10 Aligned_cols=113 Identities=15% Similarity=0.175 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHH--hCCceEEEEcCCCCCchHHH-HHHHHHhCCCceEEEecc--
Q 008627 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKL-LLRRLVRKGLSCTYTHIN-- 514 (559)
Q Consensus 440 A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e--~Gk~FrViVvESRP~~EG~~-LAk~L~~~GI~vTyI~Ds-- 514 (559)
+.+.|++..- ...+.+++|-|.+..+..+|..... .++.-+|++.+ +.+.... ....|...|+++.++...
T Consensus 52 ~r~~la~~~g--~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~--~~h~s~~~~~~~~~~~g~~v~~v~~~~~ 127 (402)
T TIGR02006 52 ARNQVAELIG--ADSREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSK--TEHKAVLDTCRYLEREGFEVTYLPPKSN 127 (402)
T ss_pred HHHHHHHHhC--CCCCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECC--CccHHHHHHHHHHHhcCCEEEEEccCCC
Confidence 4445554321 2344677776666555554443321 12333566653 3444332 344566679998888532
Q ss_pred ------hHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 515 ------AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 515 ------Avs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.+-..+.+-+++++-.+.=...| ++.. -..|+-+|+++|++|
T Consensus 128 ~~~d~~~l~~~l~~~~~lv~v~~~~n~tG-~~~~--~~~I~~l~~~~g~~l 175 (402)
T TIGR02006 128 GLIDLEELKAAIRDDTILVSIMHVNNEIG-VIQD--IAAIGEICRERKVFF 175 (402)
T ss_pred CcCCHHHHHHhcCCCCEEEEEECCCcCce-eccc--HHHHHHHHHHcCCEE
Confidence 23233332233333222222233 3333 235888889888764
No 81
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=50.96 E-value=2.2e+02 Score=30.05 Aligned_cols=99 Identities=16% Similarity=0.255 Sum_probs=46.7
Q ss_pred CCEEEEecCcHHHHHHHHHHHH--hCCceEEEEcCCCCCchHHH-HHHHH-HhCCCceEEEec--------chHHHHhc-
Q 008627 455 GDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKL-LLRRL-VRKGLSCTYTHI--------NAISYIIH- 521 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e--~Gk~FrViVvESRP~~EG~~-LAk~L-~~~GI~vTyI~D--------sAvs~iM~- 521 (559)
.++++|.|.+..+..++..... .+..-+|++.+.- +.+.. ..+.+ ...|+++.++.. ..+-..+.
T Consensus 81 ~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~--~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~ 158 (403)
T TIGR01979 81 EEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEME--HHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTE 158 (403)
T ss_pred CeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcch--hhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhcc
Confidence 3577776555544444433211 1233466666532 22211 12233 346888777752 12222222
Q ss_pred cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 522 ~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+...|++ .+.-...|.++. -..|+-+|+++|++|
T Consensus 159 ~~~lv~~-~~~~~~tG~~~~---~~~i~~~~~~~~~~~ 192 (403)
T TIGR01979 159 KTKLVAI-THVSNVLGTVNP---VEEIAKLAHQVGAKV 192 (403)
T ss_pred CCeEEEE-EcccccccccCC---HHHHHHHHHHcCCEE
Confidence 2333433 222233455444 355777888888764
No 82
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=50.86 E-value=1.5e+02 Score=30.83 Aligned_cols=72 Identities=17% Similarity=0.124 Sum_probs=40.0
Q ss_pred CEEEEecCcHH-----HHHHHHHHH----HhCCceEEEEcCCCCCchHHHHHHHHHhC-CCceEEEecchHHHHhccccE
Q 008627 456 DVLLTYGSSSA-----VEMILQHAH----ELGKQFRVVIVDSRPKHEGKLLLRRLVRK-GLSCTYTHINAISYIIHEVTR 525 (559)
Q Consensus 456 dvILT~g~Sst-----V~~iL~~A~----e~Gk~FrViVvESRP~~EG~~LAk~L~~~-GI~vTyI~DsAvs~iM~~Vdk 525 (559)
-+|+.++.|.- ....|.+|. +....++++++-..|.. -.++.+.+.+. |+.+.++. ..+..+|..+|.
T Consensus 187 ~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl 264 (380)
T PRK00025 187 RVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKR-REQIEEALAEYAGLEVTLLD-GQKREAMAAADA 264 (380)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChhh-HHHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCE
Confidence 46677766631 122333332 23335666665322221 22344445555 78876654 568888999999
Q ss_pred EEEc
Q 008627 526 VFLG 529 (559)
Q Consensus 526 VlLG 529 (559)
+|+-
T Consensus 265 ~v~~ 268 (380)
T PRK00025 265 ALAA 268 (380)
T ss_pred EEEC
Confidence 9984
No 83
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=50.43 E-value=1.1e+02 Score=32.82 Aligned_cols=106 Identities=13% Similarity=0.121 Sum_probs=67.3
Q ss_pred HHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCC----------Cc------hH----HHHHHHHH
Q 008627 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP----------KH------EG----KLLLRRLV 502 (559)
Q Consensus 443 ~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP----------~~------EG----~~LAk~L~ 502 (559)
.|...+.++|.+ ..||..|..++=..++......|.. ++.++|..- ++ +| ..++++|.
T Consensus 13 ~~G~~~Q~~L~~-~~VlIiG~GglGs~va~~La~aGvg-~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~ 90 (338)
T PRK12475 13 GIGEEGQRKIRE-KHVLIVGAGALGAANAEALVRAGIG-KLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLR 90 (338)
T ss_pred hcCHHHHHhhcC-CcEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHH
Confidence 467777888865 5799999987766777776666753 445454432 00 12 12345666
Q ss_pred hC--CCceEEEec----chHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 503 RK--GLSCTYTHI----NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 503 ~~--GI~vTyI~D----sAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+. ++.++.+.. ..+..++.++|.||.+.|..-. -+.+..+|+.+++|+
T Consensus 91 ~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~---------r~~in~~~~~~~ip~ 144 (338)
T PRK12475 91 KINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDT---------RLLINDLSQKYNIPW 144 (338)
T ss_pred HHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHH---------HHHHHHHHHHcCCCE
Confidence 54 455555532 3355667889999999875432 245677888899985
No 84
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=49.83 E-value=1.5e+02 Score=31.99 Aligned_cols=96 Identities=17% Similarity=0.199 Sum_probs=47.8
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH-HHH-HHHHhCCCceEEEec---chHHHHhcc-ccEEEEc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHI---NAISYIIHE-VTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~-~LA-k~L~~~GI~vTyI~D---sAvs~iM~~-VdkVlLG 529 (559)
++|+|-+-...+..+|......|. +|++. ++.+.+. .+. ..+...|+.++++.. ..+...+.. ...|++-
T Consensus 78 ~~v~~ssG~~Ai~~al~al~~~Gd--~Vi~~--~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~ie 153 (390)
T PRK08133 78 ACVATASGMAAILAVVMALLQAGD--HVVSS--RSLFGSTVSLFEKIFARFGIETTFVDLTDLDAWRAAVRPNTKLFFLE 153 (390)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEc--cCcchhHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEEE
Confidence 456665555555544544444343 55553 3444332 333 345667888888753 334444433 3334331
Q ss_pred ceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.---..|.+.. -..|+-+|+++++++
T Consensus 154 -~p~NptG~v~d---l~~I~~la~~~gi~l 179 (390)
T PRK08133 154 -TPSNPLTELAD---IAALAEIAHAAGALL 179 (390)
T ss_pred -CCCCCCCCcCC---HHHHHHHHHHcCCEE
Confidence 11122343332 145667788888764
No 85
>COG3109 ProQ Activator of osmoprotectant transporter ProP [Signal transduction mechanisms]
Probab=49.76 E-value=26 Score=34.81 Aligned_cols=27 Identities=37% Similarity=0.332 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 008627 196 SKAERRAIQEAQRAAKAAAKAEGIKTP 222 (559)
Q Consensus 196 ~kAERRa~Qeaqraakaa~k~~~~~~~ 222 (559)
--+|+.|.|++||++|.+.|.+..++.
T Consensus 102 Qlaeakarv~a~r~~q~a~k~e~a~aa 128 (208)
T COG3109 102 QLAEAKARVQAQRAEQQAKKREEAPAA 128 (208)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccc
Confidence 347899999999999999988866633
No 86
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=49.62 E-value=2.7e+02 Score=28.24 Aligned_cols=86 Identities=21% Similarity=0.197 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHhcccCCCEEEE-ecCcHHHHHHHHHHHHhCCceEEEEcC---------------------CCCCc
Q 008627 435 EKIILADRVIVKHAVTKIRDGDVLLT-YGSSSAVEMILQHAHELGKQFRVVIVD---------------------SRPKH 492 (559)
Q Consensus 435 ErI~~A~e~Ia~~Aa~~I~dGdvILT-~g~SstV~~iL~~A~e~Gk~FrViVvE---------------------SRP~~ 492 (559)
|.+..+.+.|.+. .|-++.+ .|+|+.|-+-|-.-.. .-.+.+|++- |.. .
T Consensus 26 ~~~~~a~~~i~~~------~gkv~V~G~GkSG~Igkk~Aa~L~-s~G~~a~fv~p~ea~hgdlg~i~~~DvviaiS~S-G 97 (202)
T COG0794 26 EDFVRAVELILEC------KGKVFVTGVGKSGLIGKKFAARLA-STGTPAFFVGPAEALHGDLGMITPGDVVIAISGS-G 97 (202)
T ss_pred HHHHHHHHHHHhc------CCcEEEEcCChhHHHHHHHHHHHH-ccCCceEEecCchhccCCccCCCCCCEEEEEeCC-C
Confidence 4555666666554 3433333 5888888655543211 2345566553 111 1
Q ss_pred hHH---HHHHHHHhCCCceEEEecchHHHHhccccEEEE
Q 008627 493 EGK---LLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (559)
Q Consensus 493 EG~---~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlL 528 (559)
|-. .++..+.+.|+++.-|+-+.=+.+-+..|.||.
T Consensus 98 eT~el~~~~~~aK~~g~~liaiT~~~~SsLak~aDvvl~ 136 (202)
T COG0794 98 ETKELLNLAPKAKRLGAKLIAITSNPDSSLAKAADVVLV 136 (202)
T ss_pred cHHHHHHHHHHHHHcCCcEEEEeCCCCChHHHhcCeEEE
Confidence 222 347788888999888886666666666777765
No 87
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=49.43 E-value=1.1e+02 Score=33.84 Aligned_cols=15 Identities=33% Similarity=0.383 Sum_probs=9.1
Q ss_pred hHHHHHHHhhCCCCC
Q 008627 545 TACVAMVAYGFHIPV 559 (559)
Q Consensus 545 T~~IALaAk~~~VPV 559 (559)
-..|+-+|+++|++|
T Consensus 174 i~~I~~la~~~gi~l 188 (437)
T PRK05613 174 IPAVAEVAHRNQVPL 188 (437)
T ss_pred HHHHHHHHHHcCCeE
Confidence 344666677777654
No 88
>PRK05443 polyphosphate kinase; Provisional
Probab=49.02 E-value=47 Score=39.14 Aligned_cols=56 Identities=27% Similarity=0.259 Sum_probs=40.5
Q ss_pred EEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCch--HHHHHHHHHhCCCceEEEec
Q 008627 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHE--GKLLLRRLVRKGLSCTYTHI 513 (559)
Q Consensus 458 ILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~E--G~~LAk~L~~~GI~vTyI~D 513 (559)
+--.+..+.+...|..|+++|+..+|+|---.+..| ....++.|.++|+.|.|-..
T Consensus 373 lYr~~~~s~iv~aL~~Aa~~Gk~V~vlve~karfde~~n~~~~~~L~~aGv~V~y~~~ 430 (691)
T PRK05443 373 LYRTSKDSPIVDALIEAAENGKQVTVLVELKARFDEEANIRWARRLEEAGVHVVYGVV 430 (691)
T ss_pred EEEecCCHHHHHHHHHHHHcCCEEEEEEccCccccHHHHHHHHHHHHHcCCEEEEccC
Confidence 333455567778888999999998888765444444 34568999999999988544
No 89
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=48.93 E-value=56 Score=31.09 Aligned_cols=43 Identities=9% Similarity=0.227 Sum_probs=17.4
Q ss_pred EecCcHHHHHHHHHHHHhC---CceEEEEcCCCCCchHHHHHHHHH
Q 008627 460 TYGSSSAVEMILQHAHELG---KQFRVVIVDSRPKHEGKLLLRRLV 502 (559)
Q Consensus 460 T~g~SstV~~iL~~A~e~G---k~FrViVvESRP~~EG~~LAk~L~ 502 (559)
||..-..+.++|....++. ..|+|||+|.....+-..+++.+.
T Consensus 8 ~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~ 53 (249)
T cd02525 8 VRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYA 53 (249)
T ss_pred cCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHH
Confidence 3333344444444443332 234444444444333333444443
No 90
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=48.85 E-value=94 Score=33.10 Aligned_cols=90 Identities=18% Similarity=0.193 Sum_probs=68.4
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceeeec
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIla 535 (559)
|.-+.|=...-+...+.+|.+.|.+.-|+++|.=|...=.++.+++.+.| +.+|=-|.-+.+.+...++=+=..-|+.
T Consensus 67 ~~svI~Vp~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g--~~iiGPncpGiI~Pg~~kiGimp~~i~~ 144 (293)
T COG0074 67 NASVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKG--TRLIGPNCPGIITPGECKIGIMPGNIYK 144 (293)
T ss_pred CEEEEecCcHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcC--CEEECCCCCccCcCCcceeeechhhhcc
Confidence 55566666667778888899989999999999999999899999999888 6777777888887765332221255666
Q ss_pred CCc--eecccchHH
Q 008627 536 NGT--VCSRVGTAC 547 (559)
Q Consensus 536 NGs--VvNKvGT~~ 547 (559)
-|. +++|.||+.
T Consensus 145 ~G~IGiVSrSGTLT 158 (293)
T COG0074 145 PGNIGIVSRSGTLT 158 (293)
T ss_pred CCceEEEecCcchH
Confidence 775 789988754
No 91
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=48.53 E-value=1.7e+02 Score=27.63 Aligned_cols=82 Identities=13% Similarity=0.103 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhC-CCceEEEec------chHHHHhc--cccEEEEcceeeecCC
Q 008627 467 VEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK-GLSCTYTHI------NAISYIIH--EVTRVFLGASSVLSNG 537 (559)
Q Consensus 467 V~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~-GI~vTyI~D------sAvs~iM~--~VdkVlLGAdaIlaNG 537 (559)
+..++....+.=..|+++.+++ .++.|.+. ||+|+.+.. ..+..+++ ++|.||-=.|- +|
T Consensus 19 l~~~a~~l~~ll~Gf~l~AT~g--------Ta~~L~~~~Gi~v~~vi~~~~gg~~~i~~~I~~g~i~lVInt~dp---~~ 87 (142)
T PRK05234 19 LVAWVKAHKDLLEQHELYATGT--------TGGLIQEATGLDVTRLLSGPLGGDQQIGALIAEGKIDMLIFFRDP---LT 87 (142)
T ss_pred HHHHHHHHHHHhcCCEEEEeCh--------HHHHHHhccCCeeEEEEcCCCCCchhHHHHHHcCceeEEEEecCC---CC
Confidence 3345554444311588888865 67888899 999988741 11344443 68998653221 12
Q ss_pred ceecccchHHHHHHHhhCCCCC
Q 008627 538 TVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 538 sVvNKvGT~~IALaAk~~~VPV 559 (559)
.--.....+.|--+|-.||||+
T Consensus 88 ~~~~~~D~~~IRR~Av~~~IP~ 109 (142)
T PRK05234 88 AQPHDPDVKALLRLADVWNIPV 109 (142)
T ss_pred CCcccchHHHHHHHHHHcCCCE
Confidence 2111334557777888899985
No 92
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=48.40 E-value=64 Score=30.09 Aligned_cols=46 Identities=15% Similarity=0.183 Sum_probs=26.0
Q ss_pred EEEEecCcHHHHHHHHHHHHhC-CceEEEEcCCCCCchHHHHHHHHH
Q 008627 457 VLLTYGSSSAVEMILQHAHELG-KQFRVVIVDSRPKHEGKLLLRRLV 502 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~G-k~FrViVvESRP~~EG~~LAk~L~ 502 (559)
+|.||.....+...|....++. ..++|||+|.....+-...++.+.
T Consensus 2 iI~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~ 48 (202)
T cd04185 2 VVVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLG 48 (202)
T ss_pred EEEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhc
Confidence 4566666666666666665432 245667666555544444454443
No 93
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=48.27 E-value=2.8e+02 Score=28.00 Aligned_cols=44 Identities=16% Similarity=-0.024 Sum_probs=33.3
Q ss_pred EcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEc
Q 008627 485 IVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (559)
Q Consensus 485 VvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLG 529 (559)
+.-++-..+-.++++...+.|+++..|++ .-+.+.+.+|.+|.-
T Consensus 182 iS~sG~t~~~~~~~~~ak~~g~~vI~IT~-~~s~l~~~ad~~l~~ 225 (284)
T PRK11302 182 ISHTGRTKSLVELAQLARENGATVIAITS-AGSPLAREATLALTL 225 (284)
T ss_pred EeCCCCCHHHHHHHHHHHHcCCeEEEECC-CCChhHHhCCEEEec
Confidence 33444455666779999999999999997 556777789998863
No 94
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=48.01 E-value=60 Score=35.07 Aligned_cols=76 Identities=21% Similarity=0.260 Sum_probs=40.6
Q ss_pred hcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc--------hHHHHhc
Q 008627 450 TKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH 521 (559)
Q Consensus 450 ~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds--------Avs~iM~ 521 (559)
..+++|+-|+.+++...|...++.| +.|.+.||+|++|... .+-...+
T Consensus 223 ~v~r~G~dvtIia~G~~v~~Al~Aa------------------------~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~ 278 (356)
T PLN02683 223 KIEREGKDVTIVAFSKMVGYALKAA------------------------EILAKEGISAEVINLRSIRPLDRDTINASVR 278 (356)
T ss_pred EEEEcCCCEEEEEccHHHHHHHHHH------------------------HHHHhcCCCEEEEECCCCCccCHHHHHHHHh
Confidence 4456676666667777776666554 2333344444444222 2223334
Q ss_pred cccEEEEcceeeecCCceecccchHHHHHHHhh
Q 008627 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG 554 (559)
Q Consensus 522 ~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~ 554 (559)
+.++|| ++.++....-.|+.....++..
T Consensus 279 ~t~~vv-----tvEE~~~~GGlGs~Va~~l~e~ 306 (356)
T PLN02683 279 KTNRLV-----TVEEGWPQHGVGAEICASVVEE 306 (356)
T ss_pred hcCeEE-----EEeCCCcCCCHHHHHHHHHHHh
Confidence 455553 4555555555666666666655
No 95
>PLN02656 tyrosine transaminase
Probab=47.89 E-value=1.7e+02 Score=31.39 Aligned_cols=55 Identities=22% Similarity=0.359 Sum_probs=32.7
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~ 512 (559)
+....+++|.|.+..+..++....+.|. +|++. .|.+.+...+..+ .|+.+.++.
T Consensus 94 ~~~~~i~~t~G~~~al~~~~~~l~~~gd--~Vlv~--~p~y~~~~~~~~~--~g~~~~~i~ 148 (409)
T PLN02656 94 LSLDDVFITSGCTQAIDVALSMLARPGA--NILLP--RPGFPIYELCAAF--RHLEVRYVD 148 (409)
T ss_pred CCcccEEEeCChHHHHHHHHHHHhCCCC--eEEEe--CCCCCcHHHHHHH--cCCEEEEEe
Confidence 4556788888887776655554444343 55554 3566554444333 577777765
No 96
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=47.49 E-value=1.6e+02 Score=31.83 Aligned_cols=95 Identities=21% Similarity=0.205 Sum_probs=49.7
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH-HHHHHHHhCCCceEEEe--cchHHHHhcc--ccEEEEcc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLRRLVRKGLSCTYTH--INAISYIIHE--VTRVFLGA 530 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~-~LAk~L~~~GI~vTyI~--DsAvs~iM~~--VdkVlLGA 530 (559)
+.|+|-|-+..+..+|......|. +|++. .|.+.+. .+++.+...|++++++. ...+...+.+ ...|++
T Consensus 70 ~~l~~~sG~~Ai~~~l~~ll~~GD--~Vlv~--~~~y~~~~~~~~~~~~~g~~v~~~~~d~~~l~~~i~~~~tklV~i-- 143 (385)
T PRK08574 70 DALAFNSGMAAISTLFFSLLKAGD--RVVLP--MEAYGTTLRLLKSLEKFGVKVVLAYPSTEDIIEAIKEGRTKLVFI-- 143 (385)
T ss_pred cEEEeCCHHHHHHHHHHHHhCCCC--EEEEc--CCCchhHHHHHHHhhccCcEEEEECCCHHHHHHhcCccCceEEEE--
Confidence 556655544555555554444443 45443 3455443 44555566788877653 2344444443 444443
Q ss_pred eeee-cCCceecccchHHHHHHHhhCCCCC
Q 008627 531 SSVL-SNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 531 daIl-aNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+.+. .+|.++. -..|+-+|+.+|++|
T Consensus 144 e~p~NPtG~v~d---l~~I~~la~~~gi~l 170 (385)
T PRK08574 144 ETMTNPTLKVID---VPEVAKAAKELGAIL 170 (385)
T ss_pred ECCCCCCCEecC---HHHHHHHHHHcCCEE
Confidence 3322 3455554 236777788888764
No 97
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=47.39 E-value=16 Score=39.58 Aligned_cols=47 Identities=28% Similarity=0.384 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhCCceEEEEcCCCCCc-hHH--HHHHHHHhCCCceEEEe
Q 008627 465 SAVEMILQHAHELGKQFRVVIVDSRPKH-EGK--LLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 465 stV~~iL~~A~e~Gk~FrViVvESRP~~-EG~--~LAk~L~~~GI~vTyI~ 512 (559)
|-|...|..|.++||+..|+| |=+-.+ |-. ..+++|.++|+.|.|-.
T Consensus 50 S~iv~aLi~AA~nGK~Vtv~v-ELkARFDEe~Ni~Wa~~Le~aGv~ViyG~ 99 (352)
T PF13090_consen 50 SPIVNALIEAAENGKQVTVLV-ELKARFDEENNIHWAKRLEEAGVHVIYGV 99 (352)
T ss_dssp -HHHHHHHHHHHTT-EEEEEE-STTSSSTTCCCCCCCHHHHHCT-EEEE--
T ss_pred CHHHHHHHHHHHcCCEEEEEE-EEeccccHHHHhHHHhhHHhcCeEEEcCC
Confidence 444567777888899887765 544443 333 34899999999999864
No 98
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=46.83 E-value=40 Score=39.46 Aligned_cols=48 Identities=31% Similarity=0.369 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhCCceEEEEc-CCCCCch-HHHHHHHHHhCCCceEEEe
Q 008627 465 SAVEMILQHAHELGKQFRVVIV-DSRPKHE-GKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 465 stV~~iL~~A~e~Gk~FrViVv-ESRP~~E-G~~LAk~L~~~GI~vTyI~ 512 (559)
|-+...|.+|.++||+..|+|= -.|-.-| -...|+.|.++|+.|.|-.
T Consensus 384 SpIV~ALi~AA~nGKqVtvlVELkARFDEE~NI~WAk~LE~AGvhVvyG~ 433 (696)
T COG0855 384 SPIVRALIDAAENGKQVTVLVELKARFDEEANIHWAKRLERAGVHVVYGV 433 (696)
T ss_pred CHHHHHHHHHHHcCCeEEEEEEEhhhcChhhhhHHHHHHHhCCcEEEecc
Confidence 4455667777788998877653 2332222 2245999999999999864
No 99
>PRK05764 aspartate aminotransferase; Provisional
Probab=46.48 E-value=2.1e+02 Score=30.09 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=29.5
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~ 512 (559)
+..+.+++|.|.+..+..++....+.|. +|++ ++ |.+.+..- .+...|+++..+.
T Consensus 89 ~~~~~i~~~~g~~~a~~~~~~~~~~~gd--~vl~-~~-p~y~~~~~--~~~~~g~~~~~~~ 143 (393)
T PRK05764 89 YDPSQVIVTTGAKQALYNAFMALLDPGD--EVII-PA-PYWVSYPE--MVKLAGGVPVFVP 143 (393)
T ss_pred CCHHHEEEeCCcHHHHHHHHHHhcCCCC--EEEe-cC-CCCcchHH--HHHHcCCEEEEEe
Confidence 4445677777777666655555444332 3433 33 55544322 2334577776665
No 100
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=46.30 E-value=2.2e+02 Score=30.92 Aligned_cols=96 Identities=19% Similarity=0.115 Sum_probs=49.3
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchH-HHH-HHHHHhCCCceEEEecc---hHHHHhc-cccEEEEc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLL-LRRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG-~~L-Ak~L~~~GI~vTyI~Ds---Avs~iM~-~VdkVlLG 529 (559)
+.|++-+-+..+..+|......| -+|++.+. .+.+ ..+ ...+...|+.++++... .+...+. +...|++
T Consensus 87 ~al~~~sG~~Ai~~~l~all~~G--d~Vl~~~~--~~~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~~- 161 (403)
T PRK07810 87 ACFATASGMSAVFTALGALLGAG--DRLVAARS--LFGSCFVVCNEILPRWGVETVFVDGEDLSQWEEALSVPTQAVFF- 161 (403)
T ss_pred cEEEECChHHHHHHHHHHHhCCC--CEEEEccC--CcchHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCceEEEE-
Confidence 56666666666655555444333 36666653 2222 223 34466678888888643 2333343 3333433
Q ss_pred ceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
..-.-..|.++. -..|+-+|++++++|
T Consensus 162 esp~Nptg~v~d---l~~I~~la~~~g~~v 188 (403)
T PRK07810 162 ETPSNPMQSLVD---IAAVSELAHAAGAKV 188 (403)
T ss_pred ECCCCCCCeecC---HHHHHHHHHHcCCEE
Confidence 111112343332 345677788888764
No 101
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=45.68 E-value=53 Score=34.63 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=47.0
Q ss_pred EEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhc--cccEEEEcceeee
Q 008627 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSVL 534 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~--~VdkVlLGAdaIl 534 (559)
.||.+|.+..-..++..|.+. .++|++++..|..-+..++.+ -+...+....++-.+.+ ++|.|+.+.+.+.
T Consensus 1 kililG~g~~~~~l~~aa~~~--G~~v~~~d~~~~~~~~~~ad~----~~~~~~~d~~~l~~~~~~~~id~v~~~~e~v~ 74 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRL--GVEVIAVDRYANAPAMQVAHR----SYVINMLDGDALRAVIEREKPDYIVPEIEAIA 74 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCCCCchhhhCce----EEEcCCCCHHHHHHHHHHhCCCEEEeccCccC
Confidence 388899888878888888775 578999999988766654421 11111111234545555 5898888876653
No 102
>PF12842 DUF3819: Domain of unknown function (DUF3819); InterPro: IPR024557 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human. It affects genes positively and negatively and is thought to regulate transcription factor IID function. In Saccharomyces cerevisiae, it exists in two prominent forms and consists of at least nine core subunits: the five Not proteins (Not1p to Not5p), Caf1p, Caf40p, Caf130p and Ccr4p []. The Ccr4-Not complex regulates many different cellular functions, including RNA degradation and transcription initiation. It may be a regulatory platform that senses nutrient levels and stress []. Caf1p and Ccr4p, are directly involved in mRNA deadenylation, and Caf1p is associated with Dhh1p, a putative RNA helicase thought to be a component of the decapping complex []. Pop2, a component of the Ccr4-Not complex, functions as a deadenylase []. This entry represents a domain of unknown function found in the Not1 subunit of the CCR4-Not complex.
Probab=45.66 E-value=2.7e+02 Score=26.44 Aligned_cols=93 Identities=27% Similarity=0.432 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCcchHH----HHHHHHHHHHHHHHhcC-chhhhHHHHHHHHHHHHHhccCCCCHHHHHHHH
Q 008627 351 CIAMLQAFQEAIRDYSTPPAKTLSR----DLTAKISSYVSFLIDCR-PLSVSMGNAIRFLKSQIAKIPISLSESEAKATL 425 (559)
Q Consensus 351 aiA~L~aLk~vI~dy~tp~~~~lsr----dL~~~L~~~i~~L~~aR-PtsvsmgNAIrrlk~~I~~l~~~~s~~eaK~~L 425 (559)
.++...+..-+.+||...++....+ .+...|..-.. |..|| |+-.+|.|-++.+....... + ..+..
T Consensus 29 ~IA~~Tt~~LV~KDFa~E~De~~~r~aa~~Mv~~LA~sLa-lvTcrepL~~~i~~~l~~~l~~~~~~----~---~~~~~ 100 (147)
T PF12842_consen 29 TIASITTEELVKKDFATEPDENKMRRAAHNMVRSLAGSLA-LVTCREPLRESIQNNLRSLLSQLNGS----T---EQELP 100 (147)
T ss_pred HHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCC----c---hhhhH
Confidence 4566666677888998866432221 22222322221 34677 88888888887776533221 1 12222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008627 426 HSDIERFINEKIILADRVIVKHAVTK 451 (559)
Q Consensus 426 ~e~Id~fI~ErI~~A~e~Ia~~Aa~~ 451 (559)
.+.+...+++.++.+...|-+.+.++
T Consensus 101 e~~i~~~~~dNlel~~~~Iek~a~ek 126 (147)
T PF12842_consen 101 EQAIQQIVNDNLELACAFIEKAAMEK 126 (147)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34555556666666666555555554
No 103
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=45.58 E-value=46 Score=35.49 Aligned_cols=134 Identities=17% Similarity=0.123 Sum_probs=82.4
Q ss_pred cChHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhccC-CCCHHHHHH
Q 008627 345 CGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPI-SLSESEAKA 423 (559)
Q Consensus 345 ~GSnAraiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAIrrlk~~I~~l~~-~~s~~eaK~ 423 (559)
+|...+++|++.+.+-.=-....|+ +++.+-...|+.+...|+-.....-.|..+++++++...+.+. -.-..+.
T Consensus 70 SGNTGI~LA~vaa~~Gy~~iivmP~--~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf-- 145 (300)
T COG0031 70 SGNTGIALAMVAAAKGYRLIIVMPE--TMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQF-- 145 (300)
T ss_pred CChHHHHHHHHHHHcCCcEEEEeCC--CCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhc--
Confidence 5777999998887552111112344 4577888888888888776665455588899998877776543 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCC
Q 008627 424 TLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDS 488 (559)
Q Consensus 424 ~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvES 488 (559)
++-.++...+ ......|.+.....+ .-.|.-.|-.+|+..+-+..+++...++++.+|-
T Consensus 146 ---~NpaN~~aH~-~tT~~EI~~~~~g~~--d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP 204 (300)
T COG0031 146 ---ENPANPEAHY-ETTGPEIWQQTDGKV--DAFVAGVGTGGTITGVARYLKERNPNVRIVAVDP 204 (300)
T ss_pred ---CCCccHHHHH-hhhHHHHHHHhCCCC--CEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECC
Confidence 1111111110 123344655544443 2457778888999988888888778899999973
No 104
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=45.57 E-value=2.1e+02 Score=33.02 Aligned_cols=43 Identities=12% Similarity=0.008 Sum_probs=33.7
Q ss_pred EcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEE
Q 008627 485 IVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (559)
Q Consensus 485 VvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlL 528 (559)
+.-|+-..+-.++++.+.+.|+++..|++. -+.+.+.+|.+|.
T Consensus 522 iS~sG~t~e~i~~~~~Ak~~Ga~vIaIT~~-~spLa~~aD~~L~ 564 (638)
T PRK14101 522 VSKSGRAPELLRVLDVAMQAGAKVIAITSS-NTPLAKRATVALE 564 (638)
T ss_pred EeCCCCCHHHHHHHHHHHHCCCeEEEEcCC-CChhHhhCCEEEE
Confidence 334555556778899999999999999995 5777788998884
No 105
>PLN02206 UDP-glucuronate decarboxylase
Probab=45.49 E-value=81 Score=34.81 Aligned_cols=101 Identities=15% Similarity=0.130 Sum_probs=57.0
Q ss_pred CCCEEEEecCcHHHHH-HHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEccee
Q 008627 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (559)
Q Consensus 454 dGdvILT~g~SstV~~-iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAda 532 (559)
.+.+||+.|-++-|-. ++....++| .+|++++.........+...+. ...+.++.-.-+...+.++|.||=-|..
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G--~~V~~ld~~~~~~~~~~~~~~~--~~~~~~i~~D~~~~~l~~~D~ViHlAa~ 193 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARG--DSVIVVDNFFTGRKENVMHHFS--NPNFELIRHDVVEPILLEVDQIYHLACP 193 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCc--CEEEEEeCCCccchhhhhhhcc--CCceEEEECCccChhhcCCCEEEEeeee
Confidence 4578999999988854 444444544 5777776432211112222222 2345555433333345678888776632
Q ss_pred eecCCc--------eecccchHHHHHHHhhCCCC
Q 008627 533 VLSNGT--------VCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 533 IlaNGs--------VvNKvGT~~IALaAk~~~VP 558 (559)
...... -.|-.||..+.-+|+..+++
T Consensus 194 ~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r 227 (442)
T PLN02206 194 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR 227 (442)
T ss_pred cchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 211111 16778999998888887764
No 106
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=45.48 E-value=2.4e+02 Score=29.38 Aligned_cols=96 Identities=16% Similarity=0.122 Sum_probs=48.7
Q ss_pred EEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------chHHHHhcc-cc-EE
Q 008627 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIHE-VT-RV 526 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D--------sAvs~iM~~-Vd-kV 526 (559)
+++|-+-+..++.++......|. +|+|+.. ..-|..+.......|+++.++.. ..+...+.. .+ ++
T Consensus 57 i~~t~~~t~al~~~~~~l~~~~~--~vlv~~~--~~~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~ 132 (363)
T TIGR02326 57 VLLQGSGTFAVEAVIGSAVPKDG--KLLVVIN--GAYGARIVQIAEYLGIPHHVVDTGEVEPPDVVEVEAILAADPAITH 132 (363)
T ss_pred EEEcCCCHHHHHHHHHhcCCCCC--eEEEEeC--ChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCccE
Confidence 44555555555555555443332 4444332 22244444444567888887753 234444442 11 23
Q ss_pred EEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 527 lLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+.-++.=...|.++ .+ ..|+-+|+.||+++
T Consensus 133 v~~~~~~~~tG~~~-~i--~~I~~l~~~~g~~l 162 (363)
T TIGR02326 133 IALVHCETTTGILN-PI--EAVAKLAHRHGKVT 162 (363)
T ss_pred EEEEeecCCccccC-cH--HHHHHHHHHcCCEE
Confidence 33333333455443 33 56888889888753
No 107
>CHL00194 ycf39 Ycf39; Provisional
Probab=45.02 E-value=1.2e+02 Score=31.21 Aligned_cols=95 Identities=18% Similarity=0.178 Sum_probs=57.0
Q ss_pred EEEEecCcHHHHH-HHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe--c-chHHHHhccccEEEEccee
Q 008627 457 VLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVFLGASS 532 (559)
Q Consensus 457 vILT~g~SstV~~-iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~--D-sAvs~iM~~VdkVlLGAda 532 (559)
+||..|-++.+-. ++..+.++| ++|+++.-++. -+..|...|+.+.... | ..+..++..+|.||--+..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g--~~V~~l~R~~~-----~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~ 74 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEG--YQVRCLVRNLR-----KASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTS 74 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCC--CeEEEEEcChH-----HhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCC
Confidence 6888999888754 445555655 56666632221 1233444566554432 2 4566778889988865433
Q ss_pred eecCCc---eecccchHHHHHHHhhCCCC
Q 008627 533 VLSNGT---VCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 533 IlaNGs---VvNKvGT~~IALaAk~~~VP 558 (559)
...+.. -+|..|+..+.-+|++.+|.
T Consensus 75 ~~~~~~~~~~~~~~~~~~l~~aa~~~gvk 103 (317)
T CHL00194 75 RPSDLYNAKQIDWDGKLALIEAAKAAKIK 103 (317)
T ss_pred CCCCccchhhhhHHHHHHHHHHHHHcCCC
Confidence 222211 23567888888888888763
No 108
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=44.61 E-value=66 Score=30.29 Aligned_cols=44 Identities=7% Similarity=0.043 Sum_probs=17.4
Q ss_pred HHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc
Q 008627 470 ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN 514 (559)
Q Consensus 470 iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds 514 (559)
++....++....+++..+...+. |..+-.-+....=++.+++|+
T Consensus 44 ~~~~~~~~~~~i~~~~~~~n~G~-~~a~n~g~~~a~gd~i~~lD~ 87 (224)
T cd06442 44 IVRELAKEYPRVRLIVRPGKRGL-GSAYIEGFKAARGDVIVVMDA 87 (224)
T ss_pred HHHHHHHhCCceEEEecCCCCCh-HHHHHHHHHHcCCCEEEEEEC
Confidence 34433333344455554444333 222222222222255556554
No 109
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=44.57 E-value=86 Score=34.91 Aligned_cols=72 Identities=17% Similarity=0.261 Sum_probs=56.3
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEccee
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAda 532 (559)
.+.+||.+|.+.+.+.+..+.++.|. ..+.+=.|-.--..+||++|. ..++..+-+..++.++|.||.+..+
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~--~~i~IaNRT~erA~~La~~~~-----~~~~~l~el~~~l~~~DvVissTsa 248 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGV--KKITIANRTLERAEELAKKLG-----AEAVALEELLEALAEADVVISSTSA 248 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCC--CEEEEEcCCHHHHHHHHHHhC-----CeeecHHHHHHhhhhCCEEEEecCC
Confidence 35789999999999888888876553 444444777777777777775 7788888999999999999988543
No 110
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=44.53 E-value=2.8e+02 Score=26.21 Aligned_cols=44 Identities=7% Similarity=-0.114 Sum_probs=34.7
Q ss_pred CCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcc
Q 008627 487 DSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (559)
Q Consensus 487 ESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGA 530 (559)
-|.-..+=.++++.+.+.|+++..|+++.-+.+-+.+|.+|.-.
T Consensus 110 ~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~ 153 (177)
T cd05006 110 TSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVP 153 (177)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeC
Confidence 34444456677899999999999999988888888899887643
No 111
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=44.46 E-value=3.4e+02 Score=28.72 Aligned_cols=115 Identities=13% Similarity=0.157 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHH--hCCceEEEEcCCCCCchHHHH-HHHH-HhCCCceEEEecc
Q 008627 439 LADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLL-LRRL-VRKGLSCTYTHIN 514 (559)
Q Consensus 439 ~A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e--~Gk~FrViVvESRP~~EG~~L-Ak~L-~~~GI~vTyI~Ds 514 (559)
.+.+.|++..-- -...++++|-|.+..+..++..... -...-+|++.+ |.+.+... ...+ ...|+++.++...
T Consensus 67 ~~r~~la~~~g~-~~~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~--~~~~s~~~~~~~~~~~~g~~v~~v~~~ 143 (401)
T PRK10874 67 AAREQVAQLLNA-PDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSE--AEHHANLVPWLMVAQQTGAKVVKLPLG 143 (401)
T ss_pred HHHHHHHHHcCC-CCCCEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECC--cchHHHHHHHHHHHHHhCCEEEEEecC
Confidence 344555543211 0234566676655555544443311 11223677765 44444222 2333 4568998887532
Q ss_pred --------hHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 515 --------AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 515 --------Avs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.+...+.+=+++++=++.-...|.+.. ...|+-+|+.+|++|
T Consensus 144 ~~~~~d~~~l~~~i~~~t~lv~i~~~~n~tG~~~~---~~~i~~l~~~~g~~~ 193 (401)
T PRK10874 144 ADRLPDVDLLPELITPRTRILALGQMSNVTGGCPD---LARAITLAHQAGMVV 193 (401)
T ss_pred CCCcCCHHHHHHhcCcCcEEEEEeCCcccccCcCC---HHHHHHHHHHcCCEE
Confidence 222222222233332433334454432 245777888888764
No 112
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=44.43 E-value=3.2e+02 Score=28.24 Aligned_cols=98 Identities=16% Similarity=0.097 Sum_probs=44.3
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---chHHHHhcc---ccE
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHE---VTR 525 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D---sAvs~iM~~---Vdk 525 (559)
+...+.|++.+.+.....++....+.| -.|++.+ |.+.....+..+ .|.++..+.. ..+-..+.. ..+
T Consensus 97 ~~~~~~i~~~~g~~~~~~~l~~~~~~g--d~V~~~~--~~~~~~~~~~~~--~g~~~~~~~~~d~~~l~~~i~~~~~~~~ 170 (385)
T PRK05958 97 FGAERALLFSSGYAANLAVLTALAGKG--DLIVSDK--LNHASLIDGARL--SRARVRRYPHNDVDALEALLAKWRAGRA 170 (385)
T ss_pred hCCCcEEEECcHHHHHHHHHHHhCCCC--CEEEEeC--ccCHHHHHHHHh--cCCceEEeCCCCHHHHHHHHHhccCCCe
Confidence 333455665554444443333322223 3455433 555444333333 5666666542 344445543 233
Q ss_pred EEEcceeeec-CCceecccchHHHHHHHhhCCCCC
Q 008627 526 VFLGASSVLS-NGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 526 VlLGAdaIla-NGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+++ ...+.. .|.+.. -..|+-+|+.||+++
T Consensus 171 lvi-~~~~~~~~G~~~~---l~~i~~ia~~~~~~l 201 (385)
T PRK05958 171 LIV-TESVFSMDGDLAP---LAELVALARRHGAWL 201 (385)
T ss_pred EEE-EEecccCCCCcCC---HHHHHHHHHHhCCEE
Confidence 333 222222 222222 345777888888753
No 113
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=44.36 E-value=3.2e+02 Score=28.87 Aligned_cols=99 Identities=13% Similarity=0.196 Sum_probs=49.8
Q ss_pred CCEEEEecCcHHHHHHHHHHHH--hCCceEEEEcCCCCCchHHHH-H-HHHHhCCCceEEEecc--------hHHHHhc-
Q 008627 455 GDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLL-L-RRLVRKGLSCTYTHIN--------AISYIIH- 521 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e--~Gk~FrViVvESRP~~EG~~L-A-k~L~~~GI~vTyI~Ds--------Avs~iM~- 521 (559)
.++|+|-|.+..+..++..... .+..-+|++.+ |.+.+... . ..+...|+++.++... .+...+.
T Consensus 79 ~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~--~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~ 156 (398)
T TIGR03392 79 ENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSE--AEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTP 156 (398)
T ss_pred CeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECC--cchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhcc
Confidence 4577777666666555544311 11223566654 44434221 2 2335578888887532 2223332
Q ss_pred cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 522 ~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+...|++ .+.=...|.+.. -..|+-+|+.+|++|
T Consensus 157 ~t~lv~i-~~~~n~tG~~~~---~~~i~~~~~~~~~~~ 190 (398)
T TIGR03392 157 RTRILAL-GQMSNVTGGCPD---LARAITLAHQYGAVV 190 (398)
T ss_pred CceEEEE-ECccccccccCC---HHHHHHHHHHcCCEE
Confidence 3344433 333334454432 245777888888754
No 114
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=44.27 E-value=1.9e+02 Score=31.06 Aligned_cols=96 Identities=15% Similarity=0.127 Sum_probs=44.2
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH-HHHHH-HHhCCCceEEEecc---hHHHHhccccEEEEcc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLRR-LVRKGLSCTYTHIN---AISYIIHEVTRVFLGA 530 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~-~LAk~-L~~~GI~vTyI~Ds---Avs~iM~~VdkVlLGA 530 (559)
+.|++-+.+..+..++ ...+.| -+|++.+ +.+.+- .+.+. +...|+.++++... .+-..+..=+++|+-.
T Consensus 64 ~~l~~~sG~~al~~~l-~ll~~G--d~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~~tklv~le 138 (378)
T TIGR01329 64 RAFAFSSGMAALDVIT-RLLNNG--DEIIAGD--DLYGGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPKTKLVLLE 138 (378)
T ss_pred cEEEECCHHHHHHHHH-HHhCCC--CEEEEcC--CCchHHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCcCceEEEEE
Confidence 4455544444333333 344333 3555543 445443 33333 44568888877632 2333333223333322
Q ss_pred eeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 531 daIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
..--..|.+.. -..|+-+|+++|++|
T Consensus 139 ~psnptg~v~d---l~~I~~la~~~g~~v 164 (378)
T TIGR01329 139 SPTNPLQKIVD---IRKISEMAHAQNALV 164 (378)
T ss_pred CCCCCCCeeec---HHHHHHHHHHcCCEE
Confidence 22222333332 345667778887753
No 115
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=44.09 E-value=2.6e+02 Score=30.07 Aligned_cols=116 Identities=20% Similarity=0.257 Sum_probs=60.5
Q ss_pred cCchhhhHHHHHHHHHHHHHhcc-----------CC-----CCHHHHHHHHHHHHHH-----HHH-HHHHHHHHHHHHHH
Q 008627 391 CRPLSVSMGNAIRFLKSQIAKIP-----------IS-----LSESEAKATLHSDIER-----FIN-EKIILADRVIVKHA 448 (559)
Q Consensus 391 aRPtsvsmgNAIrrlk~~I~~l~-----------~~-----~s~~eaK~~L~e~Id~-----fI~-ErI~~A~e~Ia~~A 448 (559)
.++...+|.|.+++++..+.... .+ .....+.+.+.+.++. |-. .-...-.+.|+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~ 87 (409)
T PLN00143 8 TEPPSYSIDDAVKFLKENFNEDDHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYL 87 (409)
T ss_pred CCcccchHHHHHHHHHHhcccCCCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHH
Confidence 45566668888888877553211 01 1233444444444431 200 00112456677665
Q ss_pred Hhc----ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 008627 449 VTK----IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 449 a~~----I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~ 512 (559)
... +...++|+|.|.+..+..++....+.|. .|+|.+ |.+.+.... +...|+.+.++.
T Consensus 88 ~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd--~v~v~~--P~y~~~~~~--~~~~g~~~~~~~ 149 (409)
T PLN00143 88 SNDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPEA--NILLPR--PGFPDVETY--AIFHHLEIRHFD 149 (409)
T ss_pred HhhcCCCCCHhhEEEecChHHHHHHHHHHHcCCCC--EEEEcC--CCCcCHHHH--HHHcCCEEEEEe
Confidence 432 4556788888888777666665444443 444433 666554332 223567666653
No 116
>PRK14012 cysteine desulfurase; Provisional
Probab=44.08 E-value=4.2e+02 Score=28.18 Aligned_cols=100 Identities=15% Similarity=0.199 Sum_probs=48.6
Q ss_pred CCEEEEecCcHHHHHHHHHHHH--hCCceEEEEcCCCCCchHH-HHHHHHHhCCCceEEEecc--------hHHHHhccc
Q 008627 455 GDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGK-LLLRRLVRKGLSCTYTHIN--------AISYIIHEV 523 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e--~Gk~FrViVvESRP~~EG~-~LAk~L~~~GI~vTyI~Ds--------Avs~iM~~V 523 (559)
.++++|-|-+..+..+|..+.. .+..-+|++.+ +.+... ..++.|...|+.+.++... .+-..+..=
T Consensus 67 ~~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~--~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~~ 144 (404)
T PRK14012 67 REIVFTSGATESDNLAIKGAAHFYQKKGKHIITSK--TEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMRDD 144 (404)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEec--CccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcCCC
Confidence 3466665555555444433321 12223566543 334332 2245566679988887421 223333332
Q ss_pred cEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 524 dkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+++++=.+.-...|.+.. + ..|+-+|+.++++|
T Consensus 145 t~lv~~~~~~n~tG~~~~-~--~~I~~la~~~g~~v 177 (404)
T PRK14012 145 TILVSIMHVNNEIGVIQD-I--AAIGEICRERGIIF 177 (404)
T ss_pred CEEEEEECcCCCccchhh-H--HHHHHHHHHcCCEE
Confidence 344433322223343332 2 45777888888764
No 117
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=44.06 E-value=40 Score=31.00 Aligned_cols=32 Identities=38% Similarity=0.544 Sum_probs=21.9
Q ss_pred ccCCCEEEEecCc---HHHHHHHHHHHHhCCceEEEE
Q 008627 452 IRDGDVLLTYGSS---SAVEMILQHAHELGKQFRVVI 485 (559)
Q Consensus 452 I~dGdvILT~g~S---stV~~iL~~A~e~Gk~FrViV 485 (559)
++.||+++.+|.| ..+.++++.|+++| ..||.
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G--~~vIa 135 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERG--MKVIA 135 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT---EEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCC--CEEEE
Confidence 8999999999776 57788888898865 45553
No 118
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=43.85 E-value=1.7e+02 Score=32.50 Aligned_cols=97 Identities=16% Similarity=0.210 Sum_probs=55.0
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH-HH-HHHHHhCCCceEEEec----chHHHHhccccEEEEc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LL-LRRLVRKGLSCTYTHI----NAISYIIHEVTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~-~L-Ak~L~~~GI~vTyI~D----sAvs~iM~~VdkVlLG 529 (559)
..|+|-+-...+..+|....+.|. +||+ +.+.|.|- .+ ...|...||.++++.. ..+...+.+-+++|+
T Consensus 78 ~av~~~SG~aAi~~al~all~~GD--~VI~--~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~~~Tk~I~- 152 (432)
T PRK06702 78 GAVATASGQAAIMLAVLNICSSGD--HLLC--SSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALANDKTKLVY- 152 (432)
T ss_pred cEEEECCHHHHHHHHHHHhcCCCC--EEEE--CCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCCcCCeEEE-
Confidence 355555555555555555444443 6666 34555544 33 3346788999998853 355556665556665
Q ss_pred ceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.+.. .|= ...-+---.|+-+|+.+|+++
T Consensus 153 ~e~p-gnP-~~~v~Di~~I~~iA~~~gi~l 180 (432)
T PRK06702 153 AESL-GNP-AMNVLNFKEFSDAAKELEVPF 180 (432)
T ss_pred EEcC-CCc-cccccCHHHHHHHHHHcCCEE
Confidence 3432 221 111113567888899999874
No 119
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=43.75 E-value=1.1e+02 Score=28.61 Aligned_cols=34 Identities=12% Similarity=-0.026 Sum_probs=14.7
Q ss_pred ceEEEEcCCCCCchHHHHH--HHHHhCCCceEEEecc
Q 008627 480 QFRVVIVDSRPKHEGKLLL--RRLVRKGLSCTYTHIN 514 (559)
Q Consensus 480 ~FrViVvESRP~~EG~~LA--k~L~~~GI~vTyI~Ds 514 (559)
.++++-.+. +...|+..+ .-+...+-+..+++|+
T Consensus 56 ~v~~~~~~~-~~~~g~~~a~n~g~~~~~~d~i~~~D~ 91 (229)
T cd04192 56 QLKILNNSR-VSISGKKNALTTAIKAAKGDWIVTTDA 91 (229)
T ss_pred ceEEeeccC-cccchhHHHHHHHHHHhcCCEEEEECC
Confidence 344333332 445555433 2233334455555543
No 120
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=43.67 E-value=1.4e+02 Score=29.15 Aligned_cols=86 Identities=16% Similarity=0.277 Sum_probs=52.1
Q ss_pred HhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEE
Q 008627 449 VTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (559)
Q Consensus 449 a~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlL 528 (559)
.+++-.|.++++.||..+=..+-..++..| -+|+|+|..|. +.++.+ -.|..+.- +..+++++|.+|.
T Consensus 17 t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~G--a~V~V~e~DPi----~alqA~-~dGf~v~~-----~~~a~~~adi~vt 84 (162)
T PF00670_consen 17 TNLMLAGKRVVVIGYGKVGKGIARALRGLG--ARVTVTEIDPI----RALQAA-MDGFEVMT-----LEEALRDADIFVT 84 (162)
T ss_dssp H-S--TTSEEEEE--SHHHHHHHHHHHHTT---EEEEE-SSHH----HHHHHH-HTT-EEE------HHHHTTT-SEEEE
T ss_pred CceeeCCCEEEEeCCCcccHHHHHHHhhCC--CEEEEEECChH----HHHHhh-hcCcEecC-----HHHHHhhCCEEEE
Confidence 446678999999999988777777776544 69999999983 233332 26887652 4456778898774
Q ss_pred --cceee--------ecCCceecccchH
Q 008627 529 --GASSV--------LSNGTVCSRVGTA 546 (559)
Q Consensus 529 --GAdaI--------laNGsVvNKvGT~ 546 (559)
|.-.| +.||.++..+|.+
T Consensus 85 aTG~~~vi~~e~~~~mkdgail~n~Gh~ 112 (162)
T PF00670_consen 85 ATGNKDVITGEHFRQMKDGAILANAGHF 112 (162)
T ss_dssp -SSSSSSB-HHHHHHS-TTEEEEESSSS
T ss_pred CCCCccccCHHHHHHhcCCeEEeccCcC
Confidence 44333 5688888888865
No 121
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=43.66 E-value=93 Score=28.51 Aligned_cols=7 Identities=14% Similarity=-0.107 Sum_probs=3.4
Q ss_pred ceEEEec
Q 008627 507 SCTYTHI 513 (559)
Q Consensus 507 ~vTyI~D 513 (559)
++.+++|
T Consensus 82 d~i~~~D 88 (181)
T cd04187 82 DAVITMD 88 (181)
T ss_pred CEEEEEe
Confidence 5555443
No 122
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=43.47 E-value=1.3e+02 Score=30.76 Aligned_cols=80 Identities=25% Similarity=0.318 Sum_probs=57.6
Q ss_pred CCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc------hHHHHhccccEEEEcceeeec---------CCc--ee
Q 008627 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN------AISYIIHEVTRVFLGASSVLS---------NGT--VC 540 (559)
Q Consensus 478 Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds------Avs~iM~~VdkVlLGAdaIla---------NGs--Vv 540 (559)
.+-+-|+..|+ ..|+..+++.|.+.||++.-|+.+ ++..+-++.-.+++||-+|+. .|. ++
T Consensus 13 ~~vI~Vlr~~~--~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiV 90 (211)
T COG0800 13 QPVVPVIRGDD--VEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIV 90 (211)
T ss_pred CCeeEEEEeCC--HHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEE
Confidence 35556666665 467889999999999988777643 334444567799999988873 233 55
Q ss_pred cccchHHHHHHHhhCCCCC
Q 008627 541 SRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 541 NKvGT~~IALaAk~~~VPV 559 (559)
+.-=+.-++-.|++|++|+
T Consensus 91 sP~~~~ev~~~a~~~~ip~ 109 (211)
T COG0800 91 SPGLNPEVAKAANRYGIPY 109 (211)
T ss_pred CCCCCHHHHHHHHhCCCcc
Confidence 5556677888899999885
No 123
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=43.43 E-value=31 Score=35.39 Aligned_cols=41 Identities=12% Similarity=0.040 Sum_probs=31.3
Q ss_pred EEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHH
Q 008627 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL 498 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LA 498 (559)
+||..|.+..+ .+++.+++.|..++||++|..|...|..++
T Consensus 3 ~vLv~g~~~~~-~~~~~l~~~~~g~~vi~~d~~~~~~~~~~~ 43 (326)
T PRK12767 3 NILVTSAGRRV-QLVKALKKSLLKGRVIGADISELAPALYFA 43 (326)
T ss_pred eEEEecCCccH-HHHHHHHHhccCCEEEEECCCCcchhhHhc
Confidence 57777777655 777777776667999999999888776543
No 124
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=43.23 E-value=1.3e+02 Score=33.43 Aligned_cols=89 Identities=22% Similarity=0.290 Sum_probs=52.8
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcce
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGAS 531 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAd 531 (559)
+..|..|+.+|...+=..+++.++..| .+|++.|.++. . ...|.+.|+.+... ... ...+.++|.||+..-
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G--~~v~~~D~~~~----~-~~~l~~~g~~~~~~-~~~-~~~l~~~D~VV~SpG 79 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAALTRFG--ARPTVCDDDPD----A-LRPHAERGVATVST-SDA-VQQIADYALVVTSPG 79 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHCC--CEEEEEcCCHH----H-HHHHHhCCCEEEcC-cch-HhHhhcCCEEEECCC
Confidence 445788999887765555565555555 58889997653 1 23466678854321 111 234567887766542
Q ss_pred eeecCCceecccchHHHHHHHhhCCCCC
Q 008627 532 SVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 532 aIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
|-. +..+-..|++.||||
T Consensus 80 -i~~---------~~p~~~~a~~~gi~v 97 (488)
T PRK03369 80 -FRP---------TAPVLAAAAAAGVPI 97 (488)
T ss_pred -CCC---------CCHHHHHHHHCCCcE
Confidence 111 235566777788875
No 125
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=42.98 E-value=1.6e+02 Score=29.29 Aligned_cols=90 Identities=18% Similarity=0.155 Sum_probs=55.3
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceee
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaI 533 (559)
.|-.||..|-..+...-++...+.|-. |+|++..+. .-.+.|.+.| .++++.-.--...+..++.||+..+--
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~--VtVvsp~~~----~~l~~l~~~~-~i~~~~~~~~~~dl~~~~lVi~at~d~ 80 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQ--LRVIAEELE----SELTLLAEQG-GITWLARCFDADILEGAFLVIAATDDE 80 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCE--EEEEcCCCC----HHHHHHHHcC-CEEEEeCCCCHHHhCCcEEEEECCCCH
Confidence 467899999998887777777776764 555554433 2234566666 777776432233455667765543211
Q ss_pred ecCCceecccchHHHHHHHhhCCCCC
Q 008627 534 LSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 534 laNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
-+| ..++..|+..++||
T Consensus 81 -----~ln----~~i~~~a~~~~ilv 97 (205)
T TIGR01470 81 -----ELN----RRVAHAARARGVPV 97 (205)
T ss_pred -----HHH----HHHHHHHHHcCCEE
Confidence 122 36777788888875
No 126
>PRK07568 aspartate aminotransferase; Provisional
Probab=42.95 E-value=1.7e+02 Score=30.73 Aligned_cols=100 Identities=14% Similarity=0.208 Sum_probs=49.6
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---c--------hHHHHh
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---N--------AISYII 520 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D---s--------Avs~iM 520 (559)
+....+++|-|.+..+..++....+.| -+|+|.+ |.+.+.. ..+...|+.+..+.. . .+...+
T Consensus 86 ~~~~~i~~t~G~~~al~~~~~~l~~~g--d~Vl~~~--p~y~~~~--~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~ 159 (397)
T PRK07568 86 VEPDEILITNGGSEAILFAMMAICDPG--DEILVPE--PFYANYN--GFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLI 159 (397)
T ss_pred CCcceEEEcCChHHHHHHHHHHhcCCC--CEEEEec--CCCccHH--HHHHHcCCEEEEeecCcccCCCCCCHHHHHHhc
Confidence 344567788877776665554433333 3566654 6655432 223456888777652 1 121222
Q ss_pred c-cccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 521 H-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 521 ~-~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
. ++..|++- .---..|.++..---..|+-+|+++++.
T Consensus 160 ~~~~~~v~i~-~p~NPtG~~~~~~~~~~i~~~~~~~~~~ 197 (397)
T PRK07568 160 TPKTKAILIS-NPGNPTGVVYTKEELEMLAEIAKKHDLF 197 (397)
T ss_pred CccceEEEEE-CCCCCCCccCCHHHHHHHHHHHHHCCcE
Confidence 2 23333222 1112233333333334567778888775
No 127
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=42.89 E-value=72 Score=36.79 Aligned_cols=35 Identities=26% Similarity=0.198 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHH
Q 008627 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHA 474 (559)
Q Consensus 440 A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A 474 (559)
..+.+-...+.+..+|.++.||+.++.|.+-|..|
T Consensus 184 W~~~~~~~l~~~~~~~~~~~t~t~a~~vr~~l~~~ 218 (662)
T PRK01747 184 WSPNLFNALARLARPGATLATFTSAGFVRRGLQEA 218 (662)
T ss_pred ccHHHHHHHHHHhCCCCEEEEeehHHHHHHHHHHc
Confidence 34555566666888999999999999999888865
No 128
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=42.85 E-value=3.1e+02 Score=28.28 Aligned_cols=99 Identities=18% Similarity=0.181 Sum_probs=50.2
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHh--CCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------chHHHHhccc
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHEL--GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIHEV 523 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~--Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D--------sAvs~iM~~V 523 (559)
+...++|-|-+.....++..+... ++.-+|++.+. .+.. +.+.+...|+++.++.. ..+-..+.+-
T Consensus 76 ~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~--~h~s--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~ 151 (371)
T PRK13520 76 DAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPES--AHFS--FDKAADMLGVELRRAPLDDDYRVDVKAVEDLIDDN 151 (371)
T ss_pred CCCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCc--chHH--HHHHHHHcCceEEEecCCCCCcCCHHHHHHHHhhC
Confidence 344567666555555555555432 12346777663 2222 22233345888877752 2233333332
Q ss_pred cEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 524 dkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
++.++..+.-...|.+.. -..|+-+|+++|+.|
T Consensus 152 ~~~vi~~~~~~~tG~~~~---l~~I~~l~~~~g~~l 184 (371)
T PRK13520 152 TIGIVGIAGTTELGQVDP---IPELSKIALENGIFL 184 (371)
T ss_pred CEEEEEEcCCcCCcccCC---HHHHHHHHHHcCCCE
Confidence 333443333334454433 445777888888764
No 129
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=42.81 E-value=1.9e+02 Score=30.25 Aligned_cols=98 Identities=16% Similarity=0.193 Sum_probs=49.3
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc---------hH-HHHhc
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AI-SYIIH 521 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds---------Av-s~iM~ 521 (559)
+...++++|.|.+..+..++. +...| .|+|. .|.+..... .+...|+++..+... .+ ..+-+
T Consensus 70 ~~~~~i~it~Ga~~~l~~~~~-~l~~g---~viv~--~P~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~ 141 (356)
T PRK08056 70 VPASWILAGNGETESIFAVVS-GLKPR---RAMIV--TPGFAEYRR--ALQQVGCEIRRYSLREADGWQLTDAILEALTP 141 (356)
T ss_pred cChhhEEECCCHHHHHHHHHH-HhCCC---CEEEe--CCCcHHHHH--HHHHcCCeEEEEecccccCCCccHHHHHhccC
Confidence 444567788777776655555 34333 45554 366654432 344568887776421 11 11123
Q ss_pred cccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 522 ~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
++..|++ +.-=-..|.++++-=-..|+-.|+++++.
T Consensus 142 ~~k~v~l-~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ 177 (356)
T PRK08056 142 DLDCLFL-CTPNNPTGLLPERQLLQAIAERCKSLNIA 177 (356)
T ss_pred CCCEEEE-eCCcCCCCCCCCHHHHHHHHHHHHhcCCE
Confidence 4555555 22222223333322134456667777765
No 130
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=42.40 E-value=88 Score=34.54 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHH---HHH-hCCceEEEEcCCCCCchHH-HHHHHHHhCCCceEEEec
Q 008627 439 LADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQH---AHE-LGKQFRVVIVDSRPKHEGK-LLLRRLVRKGLSCTYTHI 513 (559)
Q Consensus 439 ~A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~---A~e-~Gk~FrViVvESRP~~EG~-~LAk~L~~~GI~vTyI~D 513 (559)
.|++.|++.. -..+.++|.|-|-+....-+|+- +.. +.+.-++|+.... .... +.++.|...|.+|||+.-
T Consensus 48 ~AR~~iA~ll--ga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iE--H~aVl~~~~~Le~~g~~Vtyl~V 123 (386)
T COG1104 48 EAREQIAKLL--GADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIE--HPAVLNTCRYLERQGFEVTYLPV 123 (386)
T ss_pred HHHHHHHHHh--CCCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccc--cHHHHHHHHHHHhcCCeEEEeCC
Confidence 3555665532 13446899999998776666664 222 1234466665331 2222 347888778999999985
Q ss_pred chHHH--------HhccccEEEEcceeeecCCceecccchHH----HHHHHhhCCCCC
Q 008627 514 NAISY--------IIHEVTRVFLGASSVLSNGTVCSRVGTAC----VAMVAYGFHIPV 559 (559)
Q Consensus 514 sAvs~--------iM~~VdkVlLGAdaIlaNGsVvNKvGT~~----IALaAk~~~VPV 559 (559)
..=+. .++ =|.+||- .+ .+-|-+||.+ |+-+||+++|+|
T Consensus 124 ~~~G~v~~e~L~~al~-~~T~LVS--im----~aNnE~G~IQpI~ei~~i~k~~~i~f 174 (386)
T COG1104 124 DSNGLVDLEQLEEALR-PDTILVS--IM----HANNETGTIQPIAEIGEICKERGILF 174 (386)
T ss_pred CCCCeEcHHHHHHhcC-CCceEEE--EE----ecccCeeecccHHHHHHHHHHcCCeE
Confidence 53322 222 2333332 12 3457788754 888999998875
No 131
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=42.37 E-value=2.2e+02 Score=24.47 Aligned_cols=75 Identities=17% Similarity=0.186 Sum_probs=38.7
Q ss_pred EEecCcHHHHHH----HHHHHHhCCceEEE-EcCCCC---CchHHHH----HHHHHhCCCceEEEecchH----HHHhc-
Q 008627 459 LTYGSSSAVEMI----LQHAHELGKQFRVV-IVDSRP---KHEGKLL----LRRLVRKGLSCTYTHINAI----SYIIH- 521 (559)
Q Consensus 459 LT~g~SstV~~i----L~~A~e~Gk~FrVi-VvESRP---~~EG~~L----Ak~L~~~GI~vTyI~DsAv----s~iM~- 521 (559)
+-+..|..-..+ +..|...+..+.++ |.+... ..+..+. .+.+.+.++++..+....+ ..+..
T Consensus 4 v~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~ 83 (124)
T cd01987 4 VCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVVTLPGDDVAEAIVEFARE 83 (124)
T ss_pred EEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHH
Confidence 344455433333 33444445566644 444322 1233333 2344567887766654333 22332
Q ss_pred -cccEEEEcceee
Q 008627 522 -EVTRVFLGASSV 533 (559)
Q Consensus 522 -~VdkVlLGAdaI 533 (559)
++|.+++|++.-
T Consensus 84 ~~~dllviG~~~~ 96 (124)
T cd01987 84 HNVTQIVVGKSRR 96 (124)
T ss_pred cCCCEEEeCCCCC
Confidence 499999999853
No 132
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=42.16 E-value=39 Score=33.09 Aligned_cols=53 Identities=25% Similarity=0.359 Sum_probs=43.7
Q ss_pred hcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCC
Q 008627 450 TKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGL 506 (559)
Q Consensus 450 ~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI 506 (559)
+.|++-|.|+-|+-++++...|+. ||++-|+|=|+-=.+.-.+||+.|++.|.
T Consensus 76 e~I~~AdlVIsHAGaGS~letL~l----~KPlivVvNd~LMDNHQ~ELA~qL~~egy 128 (170)
T KOG3349|consen 76 EDIRSADLVISHAGAGSCLETLRL----GKPLIVVVNDSLMDNHQLELAKQLAEEGY 128 (170)
T ss_pred HHHhhccEEEecCCcchHHHHHHc----CCCEEEEeChHhhhhHHHHHHHHHHhcCc
Confidence 456677888889888888776654 79999999898877888899999999986
No 133
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=42.10 E-value=4.1e+02 Score=27.48 Aligned_cols=77 Identities=9% Similarity=0.168 Sum_probs=41.7
Q ss_pred ccCCCEEEEecCc-----HHHHHHHHHHHHhCCceEEEEcCCCCCchHH-HHHHHH-HhCCCceEEEec-chHHHHhc--
Q 008627 452 IRDGDVLLTYGSS-----SAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLRRL-VRKGLSCTYTHI-NAISYIIH-- 521 (559)
Q Consensus 452 I~dGdvILT~g~S-----stV~~iL~~A~e~Gk~FrViVvESRP~~EG~-~LAk~L-~~~GI~vTyI~D-sAvs~iM~-- 521 (559)
+..+.+|+-.|.+ .|+..+...+.......+|.+++..++.-|. .-++.. ...|+++..+.+ ..+...+.
T Consensus 191 ~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~ 270 (282)
T TIGR03499 191 LEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL 270 (282)
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc
Confidence 3455677777765 4555555555443113567777766765444 222222 335788766554 23444444
Q ss_pred -cccEEEE
Q 008627 522 -EVTRVFL 528 (559)
Q Consensus 522 -~VdkVlL 528 (559)
+.|.||+
T Consensus 271 ~~~d~vli 278 (282)
T TIGR03499 271 RDKDLILI 278 (282)
T ss_pred cCCCEEEE
Confidence 4677765
No 134
>PRK13937 phosphoheptose isomerase; Provisional
Probab=42.01 E-value=3.3e+02 Score=26.34 Aligned_cols=37 Identities=5% Similarity=-0.094 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEc
Q 008627 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (559)
Q Consensus 493 EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLG 529 (559)
+=.+.++.+.+.|+++..|+.+.-+.+.+.+|.+|.-
T Consensus 121 ~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~ 157 (188)
T PRK13937 121 NVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIV 157 (188)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEe
Confidence 4445688888999999999998888888888988753
No 135
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=41.90 E-value=1.8e+02 Score=24.63 Aligned_cols=76 Identities=20% Similarity=0.189 Sum_probs=46.0
Q ss_pred HHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceE-EEe-c----chHHHHhc--cccEEEEcceeeecCCceec
Q 008627 470 ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCT-YTH-I----NAISYIIH--EVTRVFLGASSVLSNGTVCS 541 (559)
Q Consensus 470 iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vT-yI~-D----sAvs~iM~--~VdkVlLGAdaIlaNGsVvN 541 (559)
+++..++ ..|+++.+++ .++.|.+.||+|. .+. + ..+...++ ++|+||.=.+. .+....
T Consensus 5 ~~~~l~~--lG~~i~AT~g--------Ta~~L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~~~---~~~~~~ 71 (90)
T smart00851 5 LAKRLAE--LGFELVATGG--------TAKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTLYP---LGAQPH 71 (90)
T ss_pred HHHHHHH--CCCEEEEccH--------HHHHHHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECCCc---Ccceec
Confidence 4444444 4589998864 4788889999985 432 1 11333333 69999873321 133222
Q ss_pred ccchHHHHHHHhhCCCCC
Q 008627 542 RVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 542 KvGT~~IALaAk~~~VPV 559 (559)
+ -.+.+=-+|-.++||+
T Consensus 72 ~-d~~~iRr~A~~~~Ip~ 88 (90)
T smart00851 72 E-DGKALRRAAENIDIPG 88 (90)
T ss_pred c-CcHHHHHHHHHcCCCe
Confidence 3 4566777889999985
No 136
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=41.71 E-value=51 Score=29.67 Aligned_cols=82 Identities=18% Similarity=0.197 Sum_probs=48.0
Q ss_pred EEEEecCcHHHHHHHHHHHHhCCc-eEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---chHHHHhc--cccEEEEcc
Q 008627 457 VLLTYGSSSAVEMILQHAHELGKQ-FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIH--EVTRVFLGA 530 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~Gk~-FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D---sAvs~iM~--~VdkVlLGA 530 (559)
.||.+|+-+- ++.|..+..+... -+|||+-..|..... -.|.-+.. ..+..+.+ ++|.||+|-
T Consensus 2 kVLviGsGgR-EHAia~~l~~s~~v~~v~~aPGN~G~~~~----------~~~~~~~~~d~~~l~~~a~~~~idlvvvGP 70 (100)
T PF02844_consen 2 KVLVIGSGGR-EHAIAWKLSQSPSVEEVYVAPGNPGTAEL----------GKNVPIDITDPEELADFAKENKIDLVVVGP 70 (100)
T ss_dssp EEEEEESSHH-HHHHHHHHTTCTTEEEEEEEE--TTGGGT----------SEEE-S-TT-HHHHHHHHHHTTESEEEESS
T ss_pred EEEEECCCHH-HHHHHHHHhcCCCCCEEEEeCCCHHHHhh----------ceecCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 5888887754 5666666655544 589998776654321 11211122 23444443 699999999
Q ss_pred eeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 531 daIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+.-|.+| ++=.-+..||||
T Consensus 71 E~pL~~G----------l~D~l~~~gi~v 89 (100)
T PF02844_consen 71 EAPLVAG----------LADALRAAGIPV 89 (100)
T ss_dssp HHHHHTT----------HHHHHHHTT-CE
T ss_pred hHHHHHH----------HHHHHHHCCCcE
Confidence 9999998 444555555553
No 137
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=41.33 E-value=60 Score=30.12 Aligned_cols=64 Identities=17% Similarity=0.056 Sum_probs=41.2
Q ss_pred CceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 479 k~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
...++--.+..+...|...|.-|++.|++|.++. +|.|+++.. ....--...++-.|+++++|
T Consensus 24 ~~~~~~~~~~~~GG~~~n~a~~l~~LG~~~~~~~----------~~~v~i~~~-------~~~~~~~~~~~~~~~~~~~~ 86 (196)
T cd00287 24 GLVRPGDTEERAGGGAANVAVALARLGVSVTLVG----------ADAVVISGL-------SPAPEAVLDALEEARRRGVP 86 (196)
T ss_pred CeEEeceeeecCCCcHHHHHHHHHHCCCcEEEEE----------ccEEEEecc-------cCcHHHHHHHHHHHHHcCCe
Confidence 3344444456777889999999999999999988 555555543 22111233344567777776
Q ss_pred C
Q 008627 559 V 559 (559)
Q Consensus 559 V 559 (559)
|
T Consensus 87 v 87 (196)
T cd00287 87 V 87 (196)
T ss_pred E
Confidence 4
No 138
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=41.23 E-value=1.2e+02 Score=28.71 Aligned_cols=35 Identities=29% Similarity=0.258 Sum_probs=18.0
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCC
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR 489 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESR 489 (559)
.|..|+.+|+|..+-+-|..... .+..+|++++++
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~-~~gatV~~~~~~ 61 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQ-RDGATVYSCDWK 61 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHH-HCCCEEEEeCCC
Confidence 35566666666655544444332 133555555543
No 139
>PLN02187 rooty/superroot1
Probab=41.16 E-value=2.1e+02 Score=31.62 Aligned_cols=101 Identities=18% Similarity=0.189 Sum_probs=54.5
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---c-------hHHHHhc
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---N-------AISYIIH 521 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D---s-------Avs~iM~ 521 (559)
+...++++|.|.+..+..++....+.| -+|+|.+ |.+.+.... +...|+.+.++.. . .+-..+.
T Consensus 129 ~~~~~I~it~G~~~al~~~~~~l~~pG--d~Vlv~~--P~y~~y~~~--~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~ 202 (462)
T PLN02187 129 LTPEDIFLTAGCNQGIEIVFESLARPN--ANILLPR--PGFPHYDAR--AAYSGLEVRKFDLLPEKEWEIDLEGIEAIAD 202 (462)
T ss_pred CCcccEEEeCCHHHHHHHHHHHhcCCC--CEEEEeC--CCCccHHHH--HHHcCCEEEEEeCccccCCccCHHHHHHhcC
Confidence 566688889888888776666554434 3455443 666654332 3346777766642 1 2222222
Q ss_pred -cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 522 -~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+..+|++--=. -..|.++++-=-..|+-+|+.|++.|
T Consensus 203 ~~~~~v~i~nP~-NPTG~v~s~e~l~~i~~~a~~~~i~i 240 (462)
T PLN02187 203 ENTVAMVVINPN-NPCGNVYSHDHLKKVAETARKLGIMV 240 (462)
T ss_pred CCcEEEEEeCCC-CCCCCccCHHHHHHHHHHHHHCCCEE
Confidence 23333332111 23355555444456777788888753
No 140
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=41.14 E-value=3e+02 Score=28.61 Aligned_cols=97 Identities=10% Similarity=0.012 Sum_probs=48.0
Q ss_pred CEEE-EecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecch-----HHHH---hcccc--
Q 008627 456 DVLL-TYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA-----ISYI---IHEVT-- 524 (559)
Q Consensus 456 dvIL-T~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsA-----vs~i---M~~Vd-- 524 (559)
++|+ |-+-|..+..++......| =+|+|.+ +..-|..+...+...|+++.++.... +..+ +.+-+
T Consensus 57 ~~i~~~~~gt~~l~~~~~~l~~~~--~~vlv~~--~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~ 132 (368)
T PRK13479 57 TCVPLQGSGTFSVEAAIGSLVPRD--GKVLVPD--NGAYGARIAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAADPRI 132 (368)
T ss_pred eEEEEcCCcHHHHHHHHHhccCCC--CeEEEEe--CCchHHHHHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhCCCC
Confidence 4444 4444555555555554333 2555554 34445545555666799888886431 2222 22111
Q ss_pred EEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 525 kVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+++.-++.=...|.+.. ...|+-+|+.++++|
T Consensus 133 ~~v~~~~~~~~tG~~~~---~~~i~~l~~~~~~~l 164 (368)
T PRK13479 133 THVALVHCETTTGILNP---LDEIAAVAKRHGKRL 164 (368)
T ss_pred cEEEEEcccCccccccC---HHHHHHHHHHcCCEE
Confidence 12222222223444332 357888888888753
No 141
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=41.09 E-value=77 Score=34.15 Aligned_cols=62 Identities=24% Similarity=0.314 Sum_probs=41.1
Q ss_pred HhcccCCCEEEEecCcHHHHHHHHHHHHh-CCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 008627 449 VTKIRDGDVLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 449 a~~I~dGdvILT~g~SstV~~iL~~A~e~-Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~ 512 (559)
...|..||+|+..|....+..+.....+. ...-+++|+-. +.-|+.+++.|.+.|+++++|.
T Consensus 199 ~~~l~~gD~l~v~g~~~~l~~~~~~~~~~~~~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid 261 (453)
T PRK09496 199 DTVIEAGDEVYFIGAREHIRAVMSEFGRLEKPVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIE 261 (453)
T ss_pred CcEecCCCEEEEEeCHHHHHHHHHHhCccCCCCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEE
Confidence 34566788888888877776665543221 12345677655 5567788888888888887774
No 142
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=40.86 E-value=1.4e+02 Score=33.92 Aligned_cols=100 Identities=16% Similarity=0.266 Sum_probs=58.0
Q ss_pred HHHHhcccCCCEEEEecC--cHH----HHHHHHHHHH---hC--CceEEEEcCCC-C------CchH----------HHH
Q 008627 446 KHAVTKIRDGDVLLTYGS--SSA----VEMILQHAHE---LG--KQFRVVIVDSR-P------KHEG----------KLL 497 (559)
Q Consensus 446 ~~Aa~~I~dGdvILT~g~--Sst----V~~iL~~A~e---~G--k~FrViVvESR-P------~~EG----------~~L 497 (559)
+.|+.+|+|||+|..-+. ... +..+.+++.+ .| +.++++..-+- + ..+| -..
T Consensus 6 eEAv~lIkDGdtI~iGgftg~~~P~aLl~ALa~r~~~~~~~g~p~~vtll~~~~~g~~~~~~l~~~g~v~~~is~~~sp~ 85 (485)
T TIGR03458 6 DEAAALIKDGMTVGMSGFTPAGYPKAVPAALAKRAKAAHAAGEPFKITLLTGASTGPELDGVLAEADAIARRLPYQSDPT 85 (485)
T ss_pred HHHHHhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHhhhccCCCccEEEEEecccCCcccccccccCCEEEEecccCCHH
Confidence 456678999999987765 222 2333333322 12 24555542111 1 1111 122
Q ss_pred HHHHHhCC-CceEEEecchHHHHhc-----cccEEEEcceeeecCCceecccch
Q 008627 498 LRRLVRKG-LSCTYTHINAISYIIH-----EVTRVFLGASSVLSNGTVCSRVGT 545 (559)
Q Consensus 498 Ak~L~~~G-I~vTyI~DsAvs~iM~-----~VdkVlLGAdaIlaNGsVvNKvGT 545 (559)
.+++.+.| ++++-+..+.+...++ ++|.+|+=+..+-.+|.+.=-...
T Consensus 86 ~Rkai~~G~i~y~P~~ls~ip~~lrag~~g~~DValI~VSp~D~~Gn~slg~s~ 139 (485)
T TIGR03458 86 LRKKINAGEVMYVDMHLSHVAQQLRYGFLGKVDVAVIEAAAITEDGRIIPTSSV 139 (485)
T ss_pred HHHHHHcCCCEEEeccHHHHHHHHHhcCCCCCCEEEEEEEeCCCCceEEEeccc
Confidence 45666666 3444445677777774 589999999999999987555444
No 143
>PRK06141 ornithine cyclodeaminase; Validated
Probab=40.74 E-value=2.3e+02 Score=29.83 Aligned_cols=90 Identities=17% Similarity=0.192 Sum_probs=56.3
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEccee-
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS- 532 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAda- 532 (559)
+..+|+.+|....-...+........-.+|+|.. |-.....+++.++.+.|+++... ..+...+.++|.|+.-..+
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~-Rs~~~a~~~a~~~~~~g~~~~~~--~~~~~av~~aDIVi~aT~s~ 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWG-RDPAKAEALAAELRAQGFDAEVV--TDLEAAVRQADIISCATLST 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEc-CCHHHHHHHHHHHHhcCCceEEe--CCHHHHHhcCCEEEEeeCCC
Confidence 5678999998766655554333322234666664 44445667888887777765543 2334456789988663322
Q ss_pred -------eecCCceecccchH
Q 008627 533 -------VLSNGTVCSRVGTA 546 (559)
Q Consensus 533 -------IlaNGsVvNKvGT~ 546 (559)
.+..|.+++-+|++
T Consensus 201 ~pvl~~~~l~~g~~i~~ig~~ 221 (314)
T PRK06141 201 EPLVRGEWLKPGTHLDLVGNF 221 (314)
T ss_pred CCEecHHHcCCCCEEEeeCCC
Confidence 34568888888875
No 144
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=40.45 E-value=2e+02 Score=26.43 Aligned_cols=73 Identities=11% Similarity=0.132 Sum_probs=45.8
Q ss_pred cHHHHHHHHHHHHhCCceEEEEcCCCCCc--hHHHHHHHHHhC---CCceEEEecch---HHHHhc----cccEEEEcce
Q 008627 464 SSAVEMILQHAHELGKQFRVVIVDSRPKH--EGKLLLRRLVRK---GLSCTYTHINA---ISYIIH----EVTRVFLGAS 531 (559)
Q Consensus 464 SstV~~iL~~A~e~Gk~FrViVvESRP~~--EG~~LAk~L~~~---GI~vTyI~DsA---vs~iM~----~VdkVlLGAd 531 (559)
...+...|..|.++|.+++|++....-.. ........|... ||.+.++.... .....+ +-..+++|..
T Consensus 52 ~~~l~~~L~~a~~rGv~V~il~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~H~K~~iiD~~~~~vGS~ 131 (176)
T cd00138 52 GPVILDALLAAARRGVKVRILVDEWSNTDLKISSAYLDSLRALLDIGVRVFLIRTDKTYGGVLHTKLVIVDDETAYIGSA 131 (176)
T ss_pred chHHHHHHHHHHHCCCEEEEEEcccccCCchHHHHHHHHHHHhhcCceEEEEEcCCcccccceeeeEEEEcCCEEEEECC
Confidence 56777888888888999998887665443 344557778776 78887665432 111111 2335666665
Q ss_pred eeecC
Q 008627 532 SVLSN 536 (559)
Q Consensus 532 aIlaN 536 (559)
-+...
T Consensus 132 N~~~~ 136 (176)
T cd00138 132 NLDGR 136 (176)
T ss_pred cCChh
Confidence 55443
No 145
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=40.38 E-value=1.5e+02 Score=29.25 Aligned_cols=75 Identities=27% Similarity=0.347 Sum_probs=43.5
Q ss_pred EEEEecCcHHHHHHHHHHHHhCCceEEEE-cCCCCCchHHHHHHHHHhCCCceEEEe----------cchHHHHhc--cc
Q 008627 457 VLLTYGSSSAVEMILQHAHELGKQFRVVI-VDSRPKHEGKLLLRRLVRKGLSCTYTH----------INAISYIIH--EV 523 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~Gk~FrViV-vESRP~~EG~~LAk~L~~~GI~vTyI~----------DsAvs~iM~--~V 523 (559)
.||.-|+++..+.+|....+.+....|.+ +=.+|..++. ....+.||++.++. +..+...++ .+
T Consensus 4 ail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~---~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (190)
T TIGR00639 4 VVLISGNGSNLQAIIDACKEGKIPASVVLVISNKPDAYGL---ERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEV 80 (190)
T ss_pred EEEEcCCChhHHHHHHHHHcCCCCceEEEEEECCccchHH---HHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCC
Confidence 35666667777776666655444555553 3445655554 33455799988755 223444454 58
Q ss_pred cEEEE-cceeee
Q 008627 524 TRVFL-GASSVL 534 (559)
Q Consensus 524 dkVlL-GAdaIl 534 (559)
|.+++ |-..|+
T Consensus 81 D~iv~~~~~~il 92 (190)
T TIGR00639 81 DLVVLAGFMRIL 92 (190)
T ss_pred CEEEEeCcchhC
Confidence 88876 433444
No 146
>PRK05414 urocanate hydratase; Provisional
Probab=40.30 E-value=1.9e+02 Score=33.26 Aligned_cols=115 Identities=23% Similarity=0.314 Sum_probs=78.5
Q ss_pred chHHHHHHHHHHHHHHHHhcCchhhh-HHHHHHHHHHHHHhc-c-------------------CCCCHHHHHHHHHHHHH
Q 008627 372 TLSRDLTAKISSYVSFLIDCRPLSVS-MGNAIRFLKSQIAKI-P-------------------ISLSESEAKATLHSDIE 430 (559)
Q Consensus 372 ~lsrdL~~~L~~~i~~L~~aRPtsvs-mgNAIrrlk~~I~~l-~-------------------~~~s~~eaK~~L~e~Id 430 (559)
....+|.+.|...-+...+.+|.++. +||+..-+-..+.+- . .+.+.+|+.+...+.-+
T Consensus 214 ~~~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G~t~ee~~~lr~~dp~ 293 (556)
T PRK05414 214 EKADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVGWTLEEAAELRAEDPE 293 (556)
T ss_pred eEcCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccCcCccccCcccccCCCCCCHHHHHHHHHhCHH
Confidence 45667888888888888888999986 799988777666531 1 13467888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH---hcccCCCEEEEecCc-----------------HHHHHHHHHHHHhCC-ceEEEEcCCC
Q 008627 431 RFINEKIILADRVIVKHAV---TKIRDGDVLLTYGSS-----------------SAVEMILQHAHELGK-QFRVVIVDSR 489 (559)
Q Consensus 431 ~fI~ErI~~A~e~Ia~~Aa---~~I~dGdvILT~g~S-----------------stV~~iL~~A~e~Gk-~FrViVvESR 489 (559)
.|.+ .+.+.+++|.. ++-..|..+.-|||+ +-|..+|.-.+..|+ .||=+++-..
T Consensus 294 ~~~~----~~~~Sm~rhv~Am~~~~~~G~~~fDYGN~~r~~a~~aG~~~aF~~P~fV~~~irplF~~G~GPFRWvalSGd 369 (556)
T PRK05414 294 EFVK----AAKASMARHVEAMLAFQARGAYVFDYGNNIRQMAFDAGVENAFDFPGFVPAYIRPLFCEGKGPFRWVALSGD 369 (556)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHHCCccccCCCCCchhhhcchhhhcCCCCceEEEcCCC
Confidence 8864 35677777653 445678888888886 345555555554443 4666665444
Q ss_pred C
Q 008627 490 P 490 (559)
Q Consensus 490 P 490 (559)
|
T Consensus 370 p 370 (556)
T PRK05414 370 P 370 (556)
T ss_pred H
Confidence 4
No 147
>PRK10063 putative glycosyl transferase; Provisional
Probab=40.27 E-value=1.2e+02 Score=30.46 Aligned_cols=9 Identities=11% Similarity=0.394 Sum_probs=4.9
Q ss_pred cEEEEccee
Q 008627 524 TRVFLGASS 532 (559)
Q Consensus 524 dkVlLGAda 532 (559)
+.+++|.-.
T Consensus 112 ~~~v~g~~~ 120 (248)
T PRK10063 112 NAMIIGDAL 120 (248)
T ss_pred CeEEEeeeE
Confidence 455666544
No 148
>PRK08618 ornithine cyclodeaminase; Validated
Probab=40.22 E-value=1.8e+02 Score=30.59 Aligned_cols=89 Identities=16% Similarity=0.168 Sum_probs=57.0
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCce-EEEEcCCCCCchHHHHHHHHHh-CCCceEEEecchHHHHhccccEEEEcce
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQF-RVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTHINAISYIIHEVTRVFLGAS 531 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~F-rViVvESRP~~EG~~LAk~L~~-~GI~vTyI~DsAvs~iM~~VdkVlLGAd 531 (559)
+..+|+.+|........+...... ..+ +|+|. +|-.....+++++|.+ .|+++..+.+ ...++.++|.|+...-
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~-~~~~~v~v~-~r~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~aDiVi~aT~ 201 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAV-RDIERVRVY-SRTFEKAYAFAQEIQSKFNTEIYVVNS--ADEAIEEADIIVTVTN 201 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc-CCccEEEEE-CCCHHHHHHHHHHHHHhcCCcEEEeCC--HHHHHhcCCEEEEccC
Confidence 567899999988776666543332 333 45555 4433446677887765 3776655433 3445688999887421
Q ss_pred -------eeecCCceecccchH
Q 008627 532 -------SVLSNGTVCSRVGTA 546 (559)
Q Consensus 532 -------aIlaNGsVvNKvGT~ 546 (559)
..+..|..++-+|++
T Consensus 202 s~~p~i~~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 202 AKTPVFSEKLKKGVHINAVGSF 223 (325)
T ss_pred CCCcchHHhcCCCcEEEecCCC
Confidence 455788889888875
No 149
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=40.15 E-value=1.1e+02 Score=30.33 Aligned_cols=76 Identities=22% Similarity=0.284 Sum_probs=44.2
Q ss_pred EEEEecCcHHHHHHHHHHHHhCCceEEEEc-CCCCCchHHHHHHHHHhCCCceEEEec----------chHHHHhc--cc
Q 008627 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIV-DSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH--EV 523 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~Gk~FrViVv-ESRP~~EG~~LAk~L~~~GI~vTyI~D----------sAvs~iM~--~V 523 (559)
.||.-|+++....++....+.+....|.++ -.++...+. ....+.||+|..+.. ..+...++ ++
T Consensus 5 ~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~---~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (200)
T PRK05647 5 VVLASGNGSNLQAIIDACAAGQLPAEIVAVISDRPDAYGL---ERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQP 81 (200)
T ss_pred EEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecCccchHH---HHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhCc
Confidence 466666788877777766554444555543 333444443 334567999988652 23444454 58
Q ss_pred cEEEE-cceeeec
Q 008627 524 TRVFL-GASSVLS 535 (559)
Q Consensus 524 dkVlL-GAdaIla 535 (559)
|.+|+ |-..|+.
T Consensus 82 D~iv~~~~~~ii~ 94 (200)
T PRK05647 82 DLVVLAGFMRILG 94 (200)
T ss_pred CEEEhHHhhhhCC
Confidence 98876 4445543
No 150
>PLN02828 formyltetrahydrofolate deformylase
Probab=40.05 E-value=1e+02 Score=32.23 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=42.5
Q ss_pred EEEEecCcHHHHHHHHHHHHhCC-ceEEEEcCCCC-CchHHHHHHHHHhCCCceEEEec-------chHHHHhccccEEE
Q 008627 457 VLLTYGSSSAVEMILQHAHELGK-QFRVVIVDSRP-KHEGKLLLRRLVRKGLSCTYTHI-------NAISYIIHEVTRVF 527 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~Gk-~FrViVvESRP-~~EG~~LAk~L~~~GI~vTyI~D-------sAvs~iM~~VdkVl 527 (559)
.||.=++.+..+.+|.. ++.|. ..+|.++=|.+ ...+..+.+...+.||++.+++. ..+...+.++|.|+
T Consensus 74 avlvSg~g~nl~~ll~~-~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~~~DliV 152 (268)
T PLN02828 74 AVLASKQDHCLIDLLHR-WQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPTTKENKREDEILELVKGTDFLV 152 (268)
T ss_pred EEEEcCCChhHHHHHHh-hhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHhcCCEEE
Confidence 46666677777666665 44453 45555554433 22223344445568999998763 24455566788887
Q ss_pred Ec
Q 008627 528 LG 529 (559)
Q Consensus 528 LG 529 (559)
|-
T Consensus 153 LA 154 (268)
T PLN02828 153 LA 154 (268)
T ss_pred Ee
Confidence 65
No 151
>PRK05968 hypothetical protein; Provisional
Probab=39.82 E-value=3e+02 Score=29.64 Aligned_cols=96 Identities=19% Similarity=0.129 Sum_probs=45.6
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchH-HHH-HHHHHhCCCceEEEecc---hHHHHhccccEEEEcc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLL-LRRLVRKGLSCTYTHIN---AISYIIHEVTRVFLGA 530 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG-~~L-Ak~L~~~GI~vTyI~Ds---Avs~iM~~VdkVlLGA 530 (559)
..|++-+.+..+..+|....+.|. +|++.+ +.+.+ ..+ ...+...|+++.++... .+-..+++...|++-
T Consensus 80 ~av~~~sG~~Ai~~al~al~~~Gd--~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~tklV~ie- 154 (389)
T PRK05968 80 DARGFASGMAAISSTVLSFVEPGD--RIVAVR--HVYPDAFRLFETILKRMGVEVDYVDGRDEEAVAKALPGAKLLYLE- 154 (389)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEeC--CCchHHHHHHHHHHHHcCceEEEeCCCCHHHHHHhcccCCEEEEE-
Confidence 445543333333333433333333 455543 34433 233 33455678888877432 333334455555541
Q ss_pred eeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 531 daIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
...|-++...=-..|+-+|+.+|++|
T Consensus 155 ---~pt~~~~~~~dl~~i~~la~~~gi~v 180 (389)
T PRK05968 155 ---SPTSWVFELQDVAALAALAKRHGVVT 180 (389)
T ss_pred ---CCCCCCCcHHHHHHHHHHHHHcCCEE
Confidence 12233333333334667788888764
No 152
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=39.31 E-value=53 Score=36.10 Aligned_cols=77 Identities=14% Similarity=0.103 Sum_probs=46.6
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhcc--ccEEEEcceee
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE--VTRVFLGASSV 533 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~--VdkVlLGAdaI 533 (559)
..||.+|..+-=..+...+++.+.--.||+. |.+.|....... ..+++.+....++..+.++ +|.|+.|.+..
T Consensus 5 ~kvLviG~g~rehal~~~~~~~~~~~~~~~~---pgn~g~~~~~~~--~~~~~~~~d~~~l~~~a~~~~iD~Vv~g~E~~ 79 (426)
T PRK13789 5 LKVLLIGSGGRESAIAFALRKSNLLSELKVF---PGNGGFPDDELL--PADSFSILDKSSVQSFLKSNPFDLIVVGPEDP 79 (426)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCCCEEEEE---CCchHHhccccc--cccCcCcCCHHHHHHHHHHcCCCEEEECCchH
Confidence 5799999988755555556565555577774 666554321110 1122333334555556554 99999998877
Q ss_pred ecCC
Q 008627 534 LSNG 537 (559)
Q Consensus 534 laNG 537 (559)
+..|
T Consensus 80 l~~g 83 (426)
T PRK13789 80 LVAG 83 (426)
T ss_pred HHHH
Confidence 6554
No 153
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=39.25 E-value=84 Score=25.35 Aligned_cols=53 Identities=11% Similarity=0.190 Sum_probs=33.6
Q ss_pred HHHHHHHHhCC-ceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhc
Q 008627 469 MILQHAHELGK-QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH 521 (559)
Q Consensus 469 ~iL~~A~e~Gk-~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~ 521 (559)
+.+..|.+.+. -.+||+.+..-...-..+.+.+.+.||++.++.+.-+..+-.
T Consensus 6 ~~V~eaL~~~~~i~~l~~~~~~~~~~~~~i~~~~~~~~i~v~~v~~~~l~~ls~ 59 (76)
T PF08032_consen 6 HAVEEALKSGPRIKKLFVTEEKADKRIKEILKLAKKKGIPVYEVSKKVLDKLSD 59 (76)
T ss_dssp HHHHHHHHCTGGEEEEEEETT---CCTHHHHHHHHHCT-EEEEE-HHHHHHCTT
T ss_pred HHHHHHHcCCCCccEEEEEcCccchhHHHHHHHHHHcCCeEEEeCHHHHHHHcC
Confidence 34555665554 346888888333334578888889999999999877666543
No 154
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=39.21 E-value=1.9e+02 Score=31.59 Aligned_cols=101 Identities=20% Similarity=0.229 Sum_probs=50.5
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec----------chHHHHhc
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH 521 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D----------sAvs~iM~ 521 (559)
+...++|+|.|.+..+..++....+.|. +|++. +|.+.....+..+ .|+.+.++.. .++-.++.
T Consensus 115 ~~~~~v~it~G~~~al~l~~~~l~~~Gd--~Vlv~--~P~y~~y~~~~~~--~g~~~~~~~~~~~~~~~~d~~~l~~~~~ 188 (430)
T PLN00145 115 LSTDDIYLTAGCAQAIEIIMSVLAQPGA--NILLP--RPGYPLYEARAVF--SGLEVRHFDLLPERGWEVDLEGVEALAD 188 (430)
T ss_pred CChhhEEEeCCHHHHHHHHHHHhcCCCC--EEEEc--CCCCccHHHHHHH--cCCEEEEeeCCcccCCcCCHHHHHHHhC
Confidence 4456788888888877666665544333 45554 4666554333333 4566665531 22322332
Q ss_pred -cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 522 -~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+..++++- .-=-..|.++++-=-..|+-+|++++++|
T Consensus 189 ~~~~~i~i~-~P~NPtG~v~~~~~l~~i~~~a~~~~i~i 226 (430)
T PLN00145 189 ENTVAMVII-NPNNPCGSVYSYEHLAKIAETARKLGILV 226 (430)
T ss_pred cCceEEEEe-CCCCCCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 22232222 11122344444333344566678888764
No 155
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=38.88 E-value=83 Score=29.43 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=21.4
Q ss_pred HHHHhcccCCCEEEEecCcH---HHHHHHHHHHHhC
Q 008627 446 KHAVTKIRDGDVLLTYGSSS---AVEMILQHAHELG 478 (559)
Q Consensus 446 ~~Aa~~I~dGdvILT~g~Ss---tV~~iL~~A~e~G 478 (559)
......+..+|+++.+++|+ .+..+++.|++.|
T Consensus 71 ~~~~~~~~~~D~~i~iS~sG~t~~~~~~~~~a~~~g 106 (154)
T TIGR00441 71 RQVEALGQKGDVLLGISTSGNSKNVLKAIEAAKDKG 106 (154)
T ss_pred HHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHHCC
Confidence 33344578889999998874 4555666665543
No 156
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=38.76 E-value=32 Score=32.46 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=44.3
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcce
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGAS 531 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAd 531 (559)
+..|++|...||=. -++.... .+..+|+|+|=.|...|. .+-. +.+....++++++|.||+=+.
T Consensus 8 ~~~~~~V~~VG~f~---P~~~~l~--~~~~~v~v~d~~~~~~~~----------~~~~-~~~~~~~~~l~~aD~viiTGs 71 (147)
T PF04016_consen 8 IGPGDKVGMVGYFQ---PLVEKLK--ERGAEVRVFDLNPDNIGE----------EPGD-VPDEDAEEILPWADVVIITGS 71 (147)
T ss_dssp TTTTSEEEEES--H---CCHHHHC--CCCSEEEEEESSGGG--S----------SCT--EEGGGHHHHGGG-SEEEEECH
T ss_pred hcCCCEEEEEcCcH---HHHHHHh--cCCCCEEEEECCCCCCCC----------CCCc-CCHHHHHHHHccCCEEEEEee
Confidence 67789999999832 2233332 366799999988866443 1111 178888888899999888776
Q ss_pred eeecCCc
Q 008627 532 SVLSNGT 538 (559)
Q Consensus 532 aIlaNGs 538 (559)
++. ||+
T Consensus 72 Tlv-N~T 77 (147)
T PF04016_consen 72 TLV-NGT 77 (147)
T ss_dssp HCC-TTT
T ss_pred eee-cCC
Confidence 665 544
No 157
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.60 E-value=1.7e+02 Score=31.79 Aligned_cols=90 Identities=12% Similarity=0.020 Sum_probs=52.2
Q ss_pred EEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecch---HHHHhccccEEEEcceeee
Q 008627 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA---ISYIIHEVTRVFLGASSVL 534 (559)
Q Consensus 458 ILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsA---vs~iM~~VdkVlLGAdaIl 534 (559)
|+.+|.-.+=..+.+.+++.| ..|.+.|.++...=..+...|.+.||.+..-.+.. +...+.+.|.|+++... -
T Consensus 3 v~viG~G~sG~s~a~~l~~~G--~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi-~ 79 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQG--WEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGI-P 79 (459)
T ss_pred EEEEccCHHHHHHHHHHHHCC--CEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCC-C
Confidence 445444322223344455545 68999998876544445567888898876543332 12356678988885432 2
Q ss_pred cCCceecccchHHHHHHHhhCCCCC
Q 008627 535 SNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 535 aNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
. ...+-..|++.|+||
T Consensus 80 ~---------~~~~~~~a~~~~i~v 95 (459)
T PRK02705 80 W---------DHPTLVELRERGIEV 95 (459)
T ss_pred C---------CCHHHHHHHHcCCcE
Confidence 1 234556667777764
No 158
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=38.53 E-value=1.5e+02 Score=31.05 Aligned_cols=91 Identities=13% Similarity=0.027 Sum_probs=52.6
Q ss_pred ccCCCEEEEecCcHHHHHHHHHH-HHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHh-ccccEEEEc
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHA-HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII-HEVTRVFLG 529 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A-~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM-~~VdkVlLG 529 (559)
+...++++|.|.+..+..++... .+.|. .|+ ++ .|.+-+....- ...|..+..+.| +..+- .+...|++
T Consensus 78 ~~~~~I~it~G~~~~i~~~~~~l~~~~gd--~Vl-~~-~p~y~~~~~~~--~~~g~~~~~v~~--~~~l~~~~~~~v~~- 148 (357)
T TIGR03539 78 LDPTAVLPVIGTKELVAWLPTLLGLGPGD--TVV-IP-ELAYPTYEVGA--LLAGATPVAADD--PTELDPVGPDLIWL- 148 (357)
T ss_pred CCcCeEEEccChHHHHHHHHHHHcCCCCC--EEE-EC-CCCcHHHHHHH--HhcCCEEeccCC--hhhcCccCccEEEE-
Confidence 55678899999998877666544 23342 444 44 67776665542 346777776643 11111 12333333
Q ss_pred ceeeecCCceecccchH-------HHHHHHhhCCCC
Q 008627 530 ASSVLSNGTVCSRVGTA-------CVAMVAYGFHIP 558 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~-------~IALaAk~~~VP 558 (559)
+ ...|..|+. .|+-+|+++++.
T Consensus 149 ------~-~p~NPtG~~~~~~~~~~i~~~a~~~~~~ 177 (357)
T TIGR03539 149 ------N-SPGNPTGRVLSVDELRAIVAWARERGAV 177 (357)
T ss_pred ------e-CCCCCcCccCCHHHHHHHHHHHHHcCeE
Confidence 2 356777753 366678888875
No 159
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=38.46 E-value=1e+02 Score=28.00 Aligned_cols=24 Identities=13% Similarity=0.037 Sum_probs=10.6
Q ss_pred HHHHHHHHHhCCceEEEEcCCCCC
Q 008627 468 EMILQHAHELGKQFRVVIVDSRPK 491 (559)
Q Consensus 468 ~~iL~~A~e~Gk~FrViVvESRP~ 491 (559)
..++....++...++++..+.+.+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~n~G 66 (185)
T cd04179 43 AEIARELAARVPRVRVIRLSRNFG 66 (185)
T ss_pred HHHHHHHHHhCCCeEEEEccCCCC
Confidence 334444333333445555555444
No 160
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=38.21 E-value=65 Score=34.93 Aligned_cols=75 Identities=24% Similarity=0.347 Sum_probs=54.5
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCC
Q 008627 411 KIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP 490 (559)
Q Consensus 411 ~l~~~~s~~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP 490 (559)
.++++++..++--.+|..|-.|- +-+. ..+..|+.|+.+|..++-...++.|+..| .+||+++..+
T Consensus 135 ~iP~~~d~~~aApllCaGiT~y~------alk~------~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~ 200 (339)
T COG1064 135 KIPEGLDLAEAAPLLCAGITTYR------ALKK------ANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSE 200 (339)
T ss_pred ECCCCCChhhhhhhhcCeeeEee------ehhh------cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCCh
Confidence 45666777777777777665442 1111 35888999999999999999999999887 8999998876
Q ss_pred CchHHHHHHHH
Q 008627 491 KHEGKLLLRRL 501 (559)
Q Consensus 491 ~~EG~~LAk~L 501 (559)
.. .++|++|
T Consensus 201 ~K--~e~a~~l 209 (339)
T COG1064 201 EK--LELAKKL 209 (339)
T ss_pred HH--HHHHHHh
Confidence 53 2456665
No 161
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=38.09 E-value=4.7e+02 Score=29.50 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHhccc--CCCEEEEecCcHHHHHHHHHH-HHhC--CceEEEEcCCCCCchHHHHHHHHHhCCCceEEE
Q 008627 437 IILADRVIVKHAVTKIR--DGDVLLTYGSSSAVEMILQHA-HELG--KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT 511 (559)
Q Consensus 437 I~~A~e~Ia~~Aa~~I~--dGdvILT~g~SstV~~iL~~A-~e~G--k~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI 511 (559)
++.|++.+++ +|. +.|+|+|=+-.....-+|+.- +..+ .+-+||-+...-..-+ .-++.|.+.|+.|||+
T Consensus 87 ~E~aR~~VAk----lInAd~~dIiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~-~s~~~l~~~g~~Vt~l 161 (428)
T KOG1549|consen 87 VEAAREQVAK----LINADPSDIVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCVL-DSCRALQEEGLEVTYL 161 (428)
T ss_pred HHHHHHHHHH----HhCCCCCcEEEeCCchHHHHHHHHHhhccccccccceEEEecccCcchh-HHHHHHHhcCeEEEEe
Confidence 3445665554 564 236777777666555555543 2222 2225665555432221 2367788889999999
Q ss_pred ecchHHHHhc-------cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 512 HINAISYIIH-------EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 512 ~DsAvs~iM~-------~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+..--+++.- +-+-.+++.+.|..-=++++.+ --|..+|+..||.|
T Consensus 162 pv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv--~EI~~icr~~~v~v 214 (428)
T KOG1549|consen 162 PVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPV--KEIVKICREEGVQV 214 (428)
T ss_pred ccCccccccHHHHHHhcCCCceEEEEEecccCccccccH--HHHHHHhCcCCcEE
Confidence 8663332221 3466777777776554455444 34777888887743
No 162
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=37.71 E-value=3.7e+02 Score=28.58 Aligned_cols=99 Identities=11% Similarity=0.174 Sum_probs=48.8
Q ss_pred CCEEEEecCcHHHHHHHHHH-H-HhCCceEEEEcCCCCCchHHH-HHHHH-HhCCCceEEEec--------chHHHHhc-
Q 008627 455 GDVLLTYGSSSAVEMILQHA-H-ELGKQFRVVIVDSRPKHEGKL-LLRRL-VRKGLSCTYTHI--------NAISYIIH- 521 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A-~-e~Gk~FrViVvESRP~~EG~~-LAk~L-~~~GI~vTyI~D--------sAvs~iM~- 521 (559)
.++++|.|.+..+..++... . ...+.-+|++.+. .+.+.. ....+ ...|+++.++.. ..+...+.
T Consensus 86 ~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~--~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~ 163 (406)
T PRK09295 86 EELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEM--EHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFDE 163 (406)
T ss_pred CeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcc--hhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHHHhcCC
Confidence 46788876665554444321 0 1122236666652 222211 12333 346888888753 22333333
Q ss_pred cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 522 ~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+...|++- +.=...|.++. ...|+-+|+.+|+.|
T Consensus 164 ~t~lv~l~-~~~n~tG~~~~---~~~i~~~~~~~~~~v 197 (406)
T PRK09295 164 RTRLLAIT-HVSNVLGTENP---LAEMIALAHQHGAKV 197 (406)
T ss_pred CcEEEEEe-cchhcccccCC---HHHHHHHHHHcCCEE
Confidence 34444443 33344555543 245777788888753
No 163
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=37.36 E-value=2.2e+02 Score=28.97 Aligned_cols=99 Identities=10% Similarity=0.079 Sum_probs=46.8
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---chHHHHhcc-----
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHE----- 522 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D---sAvs~iM~~----- 522 (559)
++...+.|++.+.+..+..++..+...| -+|++ ++|.+..... .+...|+++.++.. ..+-.++.+
T Consensus 58 ~~~~~~~iv~~sg~~a~~~~~~~~~~~g--d~Vl~--~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~ 131 (349)
T cd06454 58 FHGKEAALVFSSGYAANDGVLSTLAGKG--DLIIS--DSLNHASIID--GIRLSGAKKRIFKHNDMEDLEKLLREARRPY 131 (349)
T ss_pred HhCCCCEEEeccHHHHHHHHHHHhcCCC--CEEEE--ehhhhHHHHH--HHHHcCCceEEecCCCHHHHHHHHHHhhccC
Confidence 3433345555444444443443333333 24444 3455444332 23446888776632 233444433
Q ss_pred ccEEEEcceeee-cCCceecccchHHHHHHHhhCCCCC
Q 008627 523 VTRVFLGASSVL-SNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 523 VdkVlLGAdaIl-aNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
-.++++ ...+. ..| ++..+ ..|+-+|++++++|
T Consensus 132 ~~~~v~-~~~~~~~tG-~~~~~--~~i~~~~~~~~~~l 165 (349)
T cd06454 132 GKKLIV-TEGVYSMDG-DIAPL--PELVDLAKKYGAIL 165 (349)
T ss_pred CCeEEE-EeccccCCC-CccCH--HHHHHHHHHcCCEE
Confidence 234444 22232 334 34443 45777888888864
No 164
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=37.28 E-value=2.6e+02 Score=24.80 Aligned_cols=33 Identities=30% Similarity=0.536 Sum_probs=20.2
Q ss_pred HHhCCCceEEEec---chHHHHhc-----cccEEEEcceee
Q 008627 501 LVRKGLSCTYTHI---NAISYIIH-----EVTRVFLGASSV 533 (559)
Q Consensus 501 L~~~GI~vTyI~D---sAvs~iM~-----~VdkVlLGAdaI 533 (559)
+...|+++..+.. +...-++. ++|.+++|++.-
T Consensus 74 ~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~ 114 (146)
T cd01989 74 CSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSD 114 (146)
T ss_pred HhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCC
Confidence 3346776655542 33333433 589999999864
No 165
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=37.26 E-value=1.4e+02 Score=32.30 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=14.4
Q ss_pred cccCCCEEEEecCcHHHHHHHHHH
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHA 474 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A 474 (559)
.+++|.-|+.+++.+++..+++.+
T Consensus 229 vl~~G~di~Iia~Gs~~~~aleAa 252 (355)
T PTZ00182 229 VVREGKDVTIVGYGSQVHVALKAA 252 (355)
T ss_pred EecCCCCEEEEEeCHHHHHHHHHH
Confidence 355666666666666666555544
No 166
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=37.26 E-value=5.3e+02 Score=27.37 Aligned_cols=131 Identities=15% Similarity=0.062 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcccC--CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcC-CCCCc
Q 008627 418 ESEAKATLHSDIERF--INEKIILADRVIVKHAVTKIRD--GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVD-SRPKH 492 (559)
Q Consensus 418 ~~eaK~~L~e~Id~f--I~ErI~~A~e~Ia~~Aa~~I~d--GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvE-SRP~~ 492 (559)
..++++..++.++.| -.+ ..+.+.+..+++..- ..+++|-|.+..+..+|......| -.|++.. .+|.+
T Consensus 35 ~~~~~~~~~~~~~~~~g~~~----~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~~g--d~Vli~~~d~p~~ 108 (346)
T TIGR03576 35 GFKIDEEDLELLETYVGPAI----FEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEPPG--RKVVHYLPEKPAH 108 (346)
T ss_pred ChhHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCCCC--CEEEECCCCCCCc
Confidence 456677777777777 222 123344444445432 455666555556555555443333 3566542 35655
Q ss_pred hHHHHHHHHHhCCCceEEEec-chHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 493 EGKLLLRRLVRKGLSCTYTHI-NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 493 EG~~LAk~L~~~GI~vTyI~D-sAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
--..-.-+| .|.++....+ ..+.. ..+...|++ ..-..+|.++.+.=-..|+-+|+.+++.|
T Consensus 109 ~s~~~~~~l--~ga~~~~~~~l~~l~~-~~~~~lIii--tg~s~~G~v~~~~~L~~i~~la~~~~~~l 171 (346)
T TIGR03576 109 PSIPRSCKL--AGAEYFESDELSELKK-IDGTSLVVI--TGSTMDLKVVSEEDLKRVIKQAKSKEAIV 171 (346)
T ss_pred hhHHHHHHH--cCCEEeccCCHHHHhh-CcCceEEEE--ECCCCCCcccCHHHHHHHHHHHHHcCCEE
Confidence 433222222 3555432222 11111 123344554 11133566665444445666678777653
No 167
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=37.25 E-value=97 Score=34.85 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=32.7
Q ss_pred HHHHHHhCCCceEEEecch--------HHHHhccccEEEEcceeeecCCceecccchHHHHHHHhh
Q 008627 497 LLRRLVRKGLSCTYTHINA--------ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG 554 (559)
Q Consensus 497 LAk~L~~~GI~vTyI~DsA--------vs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~ 554 (559)
.++.|.+.||+|++|.... +-...++..+|+ ++.+|....-+|+...+.++.+
T Consensus 358 Aa~~L~~~GI~~~VIdl~tlkPlD~~~i~~sv~kt~~vv-----tvEE~~~~gGlG~~va~~l~e~ 418 (464)
T PRK11892 358 AAEELAKEGIDAEVIDLRTIRPMDTETIVESVKKTNRLV-----TVEEGWPQSGVGAEIAARVMEQ 418 (464)
T ss_pred HHHHHHhcCCCEEEEECCCCCcCCHHHHHHHHHhcCeEE-----EEeCCCcCCcHHHHHHHHHHHh
Confidence 3455666667666664433 333344566653 5667777777888888877765
No 168
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=37.22 E-value=4.9e+02 Score=26.88 Aligned_cols=38 Identities=18% Similarity=0.047 Sum_probs=32.2
Q ss_pred chHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEc
Q 008627 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (559)
Q Consensus 492 ~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLG 529 (559)
.+-.++++.+.+.|+++..|+.+.-+.+-+.+|.+|.-
T Consensus 103 ~~~~~~~~~ak~~g~~vI~iT~~~~s~la~~ad~~l~~ 140 (321)
T PRK11543 103 KELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDI 140 (321)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEc
Confidence 34557789999999999999998888888889999853
No 169
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=37.20 E-value=71 Score=35.44 Aligned_cols=79 Identities=14% Similarity=0.093 Sum_probs=46.1
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCc--hHHHHHHHHHhCC--CceEEEecchHHHHhc--cccEEEEc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKH--EGKLLLRRLVRKG--LSCTYTHINAISYIIH--EVTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~--EG~~LAk~L~~~G--I~vTyI~DsAvs~iM~--~VdkVlLG 529 (559)
..||..+++.....+++.|++.|. +++++.+.|.. -+..++-+....| ..-.|+....+-.+.+ ++|.|+-|
T Consensus 3 ~kvLi~~~geia~~ii~a~~~~Gi--~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~~~y~d~~~i~~~a~~~~~D~I~pg 80 (472)
T PRK07178 3 KKILIANRGEIAVRIVRACAEMGI--RSVAIYSEADRHALHVKRADEAYSIGADPLAGYLNPRRLVNLAVETGCDALHPG 80 (472)
T ss_pred cEEEEECCcHHHHHHHHHHHHcCC--eEEEEeCCCccCCccHhhCCEEEEcCCCchhhhcCHHHHHHHHHHHCCCEEEeC
Confidence 369999999999999999998775 55555555443 3443332211111 0112333345555553 68888887
Q ss_pred ceeeecC
Q 008627 530 ASSVLSN 536 (559)
Q Consensus 530 AdaIlaN 536 (559)
..-+..|
T Consensus 81 ~g~lse~ 87 (472)
T PRK07178 81 YGFLSEN 87 (472)
T ss_pred CCCcccC
Confidence 6444444
No 170
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=36.89 E-value=34 Score=38.48 Aligned_cols=77 Identities=12% Similarity=0.123 Sum_probs=42.1
Q ss_pred EEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHH-HHHHHhCCCceEEEecchHHHHhc--cccEEEEcceee
Q 008627 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSV 533 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~L-Ak~L~~~GI~vTyI~DsAvs~iM~--~VdkVlLGAdaI 533 (559)
.||.+|...-...+...+++..+..+||++.+.+ +-|... +..+...-+.+.+.....+..+.+ ++|.||+|.+.-
T Consensus 2 kVLviG~Ggrehal~~~l~~s~~g~~v~~~~g~~-Npg~~~~~~~~~~~~~~~~~~d~~~l~~~a~~~~id~Vi~g~E~~ 80 (486)
T PRK05784 2 KVLLVGDGAREHALAEALEKSTKGYKVYALSSYL-NPGINSVVKATGGEYFIGNINSPEEVKKVAKEVNPDLVVIGPEEP 80 (486)
T ss_pred EEEEECCchhHHHHHHHHHhCCCCCEEEEEECCC-ChhheeecccccCceEecCCCCHHHHHHHHHHhCCCEEEECCchH
Confidence 6899998887655555555543467999997633 333321 222111001111112234444444 599999998764
Q ss_pred e
Q 008627 534 L 534 (559)
Q Consensus 534 l 534 (559)
+
T Consensus 81 l 81 (486)
T PRK05784 81 L 81 (486)
T ss_pred H
Confidence 4
No 171
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=36.88 E-value=1.4e+02 Score=26.22 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=22.6
Q ss_pred HHHHhCCCceEEEecc--hHHHHhccccEEEEcceee
Q 008627 499 RRLVRKGLSCTYTHIN--AISYIIHEVTRVFLGASSV 533 (559)
Q Consensus 499 k~L~~~GI~vTyI~Ds--Avs~iM~~VdkVlLGAdaI 533 (559)
+.+.+.|+++++...+ .+.....++|.||+|.+.-
T Consensus 25 ~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~ 61 (95)
T TIGR00853 25 KAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVA 61 (95)
T ss_pred HHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHH
Confidence 4456678877666543 3444667888888887543
No 172
>PLN02778 3,5-epimerase/4-reductase
Probab=36.72 E-value=1.1e+02 Score=31.45 Aligned_cols=19 Identities=26% Similarity=0.162 Sum_probs=16.3
Q ss_pred ecccchHHHHHHHhhCCCC
Q 008627 540 CSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 540 vNKvGT~~IALaAk~~~VP 558 (559)
.|-.||..++-+|+++++.
T Consensus 86 ~Nv~gt~~ll~aa~~~gv~ 104 (298)
T PLN02778 86 ANVVGTLTLADVCRERGLV 104 (298)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 6788999999999988864
No 173
>PRK07683 aminotransferase A; Validated
Probab=36.62 E-value=2.7e+02 Score=29.47 Aligned_cols=97 Identities=20% Similarity=0.222 Sum_probs=49.2
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecch---------HHHHhccccEE
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA---------ISYIIHEVTRV 526 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsA---------vs~iM~~VdkV 526 (559)
++++|.|.+..+..++....+.|. +|++ ..|.+.+...+- ...|+++.++.... +...+..-+++
T Consensus 91 ~I~~t~G~~~al~~~~~~l~~~gd--~Vl~--~~p~y~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 164 (387)
T PRK07683 91 EIIVTIGASEAIDIAFRTILEPGT--EVIL--PAPIYPGYEPII--RLCGAKPVFIDTRSTGFRLTAEALENAITEKTRC 164 (387)
T ss_pred cEEEeCChHHHHHHHHHHhCCCCC--EEEE--cCCCccchHHHH--HHcCCEEEEeecCcccCCCCHHHHHHhcCcCceE
Confidence 688888888777666655444443 4444 355666554432 33688888876432 22222222232
Q ss_pred EEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 527 lLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
++=..---..|.+++.-=-..++-+|+++++.
T Consensus 165 i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ 196 (387)
T PRK07683 165 VVLPYPSNPTGVTLSKEELQDIADVLKDKNIF 196 (387)
T ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeE
Confidence 21111111223333333334566777887765
No 174
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=36.57 E-value=3e+02 Score=29.42 Aligned_cols=96 Identities=18% Similarity=0.199 Sum_probs=46.7
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH-HHH-HHHHhCCCceEEEecch---HHHHhc-cccEEEEc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHINA---ISYIIH-EVTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~-~LA-k~L~~~GI~vTyI~DsA---vs~iM~-~VdkVlLG 529 (559)
++++|-+-+..+..+|....+.|. +|++. ++.+.+- .+. ..+...|++++++.... +-..+. +...|++-
T Consensus 71 ~~~~~~sG~~Ai~~al~al~~~Gd--~Vl~~--~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~le 146 (380)
T TIGR01325 71 RAVATATGMSAIQAALMTLLQAGD--HVVAS--RSLFGSTVGFISEILPRFGIEVSFVDPTDLNAWEAAVKPNTKLVFVE 146 (380)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEe--cCCcchHHHHHHHHHHHhCCEEEEECCCCHHHHHHhcCCCceEEEEE
Confidence 456655555555555544444443 45553 3444332 333 34566788888876432 222332 33344431
Q ss_pred ceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.---..|.+.. -..|+-+|+++|++|
T Consensus 147 -~p~np~g~~~d---l~~I~~la~~~gi~l 172 (380)
T TIGR01325 147 -TPSNPLGELVD---IAALAELAHAIGALL 172 (380)
T ss_pred -CCCCCCCeeeC---HHHHHHHHHHcCCEE
Confidence 11112233332 245666778888764
No 175
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=36.48 E-value=6.3e+02 Score=27.99 Aligned_cols=112 Identities=16% Similarity=0.128 Sum_probs=71.7
Q ss_pred HHHHHHHHhcc--cCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHh---CCCceEEEecc-h
Q 008627 442 RVIVKHAVTKI--RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR---KGLSCTYTHIN-A 515 (559)
Q Consensus 442 e~Ia~~Aa~~I--~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~---~GI~vTyI~Ds-A 515 (559)
+.+....+.+| +.++++.|-+.|-++.+.|..+.+....-+|||.|..-.-.+.-+++-|++ .|.++..+..- +
T Consensus 79 ~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~~~~~~~~~P~~ 158 (407)
T COG3844 79 ERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIGYDLEGVIAPRA 158 (407)
T ss_pred hHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhcccccceeeeChHH
Confidence 45666667777 457999999999999999999887555678999998777667767666655 34566665544 5
Q ss_pred HHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCC
Q 008627 516 ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFH 556 (559)
Q Consensus 516 vs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~ 556 (559)
+..++.+=..|++=.+.=+..|.+.- ...|-.+||.|+
T Consensus 159 ~~~~~~dd~AvV~L~~V~y~TGql~d---m~aiT~~AH~~g 196 (407)
T COG3844 159 LEEAITDDVAVVLLSHVNYKTGQLLD---MRAITALAHQHG 196 (407)
T ss_pred HHHhhccceEEEEeccccccccceee---HHHHHHHHHhcC
Confidence 55555544444443444444443321 123445556555
No 176
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=36.46 E-value=1.2e+02 Score=32.54 Aligned_cols=68 Identities=19% Similarity=0.288 Sum_probs=41.9
Q ss_pred HHHHHHHhcccCC-CEEEEecCcHHHHHHHHHHHHhCC------ceEEEEcCCCCCchHHH----HHHHHHhCCCceEEE
Q 008627 443 VIVKHAVTKIRDG-DVLLTYGSSSAVEMILQHAHELGK------QFRVVIVDSRPKHEGKL----LLRRLVRKGLSCTYT 511 (559)
Q Consensus 443 ~Ia~~Aa~~I~dG-dvILT~g~SstV~~iL~~A~e~Gk------~FrViVvESRP~~EG~~----LAk~L~~~GI~vTyI 511 (559)
..+++.++++.+| .+|+|||+..-|-.+++....... .|.+.+.||- .+=|.. |-.+|.+.||+..++
T Consensus 32 ~~a~~i~~~~~~g~~vvi~hGnGpQVG~i~~~~~~~~~~~~~~~pld~~~a~sq-G~igy~l~~al~~~l~~~g~~~~v~ 110 (313)
T PRK12454 32 KTAKQIADLIEEGYEVVITHGNGPQVGNLLLQMDAAKDVGIPPFPLDVAGAMTQ-GWIGYMIQQALRNELAKRGIEKQVA 110 (313)
T ss_pred HHHHHHHHHHHcCCEEEEEECCChHHHHHHHHHHHhcccCCCCCccchhhhhhh-HHHHHHHHHHHHHHHHhcCCCCceE
Confidence 4455555677774 799999999998777665332222 2666666663 222333 445667788875443
No 177
>PRK13936 phosphoheptose isomerase; Provisional
Probab=36.31 E-value=4.2e+02 Score=25.90 Aligned_cols=37 Identities=0% Similarity=-0.143 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCCCceEEEec---chHHHHhccccEEEEcc
Q 008627 494 GKLLLRRLVRKGLSCTYTHI---NAISYIIHEVTRVFLGA 530 (559)
Q Consensus 494 G~~LAk~L~~~GI~vTyI~D---sAvs~iM~~VdkVlLGA 530 (559)
=.++++.+.+.|+++..|+. +.++-+...+|.+|.=.
T Consensus 127 ~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~ 166 (197)
T PRK13936 127 VIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVP 166 (197)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeC
Confidence 34568888899999999998 55555544688776443
No 178
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=36.16 E-value=1.3e+02 Score=34.54 Aligned_cols=116 Identities=22% Similarity=0.328 Sum_probs=76.3
Q ss_pred chHHHHHHHHHHHHHHHHhcCchhhh-HHHHHHHHHHHHHhc--c------------------CCCCHHHHHHHHHHHHH
Q 008627 372 TLSRDLTAKISSYVSFLIDCRPLSVS-MGNAIRFLKSQIAKI--P------------------ISLSESEAKATLHSDIE 430 (559)
Q Consensus 372 ~lsrdL~~~L~~~i~~L~~aRPtsvs-mgNAIrrlk~~I~~l--~------------------~~~s~~eaK~~L~e~Id 430 (559)
....+|.+.|+..-++..+.+|.++. +||++..+...++.- + .+++.+|+++...+.=+
T Consensus 204 ~~~~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~tDQTS~Hdp~~GY~P~g~t~eea~~l~~~dp~ 283 (546)
T PF01175_consen 204 EVTDDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLVTDQTSAHDPLNGYYPAGLTFEEANELRAEDPE 283 (546)
T ss_dssp EEESSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE---SSTT-TTTS---TT--HHHHHHHHHHSHH
T ss_pred EEcCCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcccCCCccccccccCCCCCCCHHHHHHHHhhCHH
Confidence 45678888888888888899999985 799988777666531 1 13467888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH---hcccCCCEEEEecCc-----------------HHHHHHHHHHHHhCC-ceEEEEcCCC
Q 008627 431 RFINEKIILADRVIVKHAV---TKIRDGDVLLTYGSS-----------------SAVEMILQHAHELGK-QFRVVIVDSR 489 (559)
Q Consensus 431 ~fI~ErI~~A~e~Ia~~Aa---~~I~dGdvILT~g~S-----------------stV~~iL~~A~e~Gk-~FrViVvESR 489 (559)
.|.+ .+.+.|.+|.. ++-..|..+.=|||+ +-|..+|.-.+..|+ .||=+++-..
T Consensus 284 ~~~~----~v~~Sl~rhv~Am~~~~~~G~~~fDYGN~~r~~a~~aG~~~aF~~P~fV~~~irplF~~G~GPFRWv~lSGd 359 (546)
T PF01175_consen 284 EFKE----RVQESLARHVEAMLELQDRGAYFFDYGNNFRLEAFDAGVDEAFDYPSFVPAYIRPLFCEGFGPFRWVCLSGD 359 (546)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHHTT-EE-B-SSSHHHHHHHTT-TTGGGS-BHHHHTTHHHHTTT-EEEEEEETT--
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHCCCEEEecCchHHHHHHHcCcceeecccccHHHHhhHHhhcCCCCceeeecCCC
Confidence 8864 35667777653 445678888889987 456677777777675 5888888666
Q ss_pred CC
Q 008627 490 PK 491 (559)
Q Consensus 490 P~ 491 (559)
|.
T Consensus 360 pe 361 (546)
T PF01175_consen 360 PE 361 (546)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 179
>PRK07340 ornithine cyclodeaminase; Validated
Probab=35.90 E-value=2.4e+02 Score=29.61 Aligned_cols=97 Identities=15% Similarity=0.069 Sum_probs=57.8
Q ss_pred HHHHhcc--cCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccc
Q 008627 446 KHAVTKI--RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEV 523 (559)
Q Consensus 446 ~~Aa~~I--~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~V 523 (559)
..+.+++ .+..+|+.+|....-...+.........-+|+|.+ |-...-..++.++.+.++++. .+ .+..++.++
T Consensus 114 ala~~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~-r~~~~a~~~a~~~~~~~~~~~--~~-~~~~av~~a 189 (304)
T PRK07340 114 LLAARTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRG-RTAASAAAFCAHARALGPTAE--PL-DGEAIPEAV 189 (304)
T ss_pred HHHHHHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEc-CCHHHHHHHHHHHHhcCCeeE--EC-CHHHHhhcC
Confidence 3344444 25578999998766665555543322223566664 333345577888877777665 22 334455788
Q ss_pred cEEEEcc-------eeeecCCceecccchH
Q 008627 524 TRVFLGA-------SSVLSNGTVCSRVGTA 546 (559)
Q Consensus 524 dkVlLGA-------daIlaNGsVvNKvGT~ 546 (559)
|.|+... +..+.-|..+|-+|++
T Consensus 190 DiVitaT~s~~Pl~~~~~~~g~hi~~iGs~ 219 (304)
T PRK07340 190 DLVVTATTSRTPVYPEAARAGRLVVAVGAF 219 (304)
T ss_pred CEEEEccCCCCceeCccCCCCCEEEecCCC
Confidence 8887521 1135778888888865
No 180
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=35.83 E-value=4.6e+02 Score=26.18 Aligned_cols=68 Identities=22% Similarity=0.219 Sum_probs=42.2
Q ss_pred HhcccCCCEEEE---ecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccE
Q 008627 449 VTKIRDGDVLLT---YGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTR 525 (559)
Q Consensus 449 a~~I~dGdvILT---~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~Vdk 525 (559)
..+=+.||+++- -|+|..|.+.++.|++ +...||++-++-+.+ |+.-+ ++.+...+--...++++..
T Consensus 104 eA~g~~GDvLigISTSGNS~nVl~Ai~~Ak~--~gm~vI~ltG~~GG~---~~~~~-----D~~i~VPs~~t~RIQE~Hi 173 (176)
T COG0279 104 EALGQPGDVLIGISTSGNSKNVLKAIEAAKE--KGMTVIALTGKDGGK---LAGLL-----DVEIRVPSTDTARIQEMHI 173 (176)
T ss_pred HhcCCCCCEEEEEeCCCCCHHHHHHHHHHHH--cCCEEEEEecCCCcc---ccccc-----ceEEecCCCcchhhhhhhe
Confidence 334567998664 5778899999999987 557888886665433 22222 4555544444444445444
Q ss_pred E
Q 008627 526 V 526 (559)
Q Consensus 526 V 526 (559)
+
T Consensus 174 ~ 174 (176)
T COG0279 174 L 174 (176)
T ss_pred e
Confidence 3
No 181
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=35.81 E-value=2.5e+02 Score=29.36 Aligned_cols=111 Identities=14% Similarity=0.143 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcccC-CCEEEEecCcHHHHHHHHHHHH-hCCceEEEEcCCCCCchHHH-HHHHHH-hCCCceEEEec--
Q 008627 440 ADRVIVKHAVTKIRD-GDVLLTYGSSSAVEMILQHAHE-LGKQFRVVIVDSRPKHEGKL-LLRRLV-RKGLSCTYTHI-- 513 (559)
Q Consensus 440 A~e~Ia~~Aa~~I~d-GdvILT~g~SstV~~iL~~A~e-~Gk~FrViVvESRP~~EG~~-LAk~L~-~~GI~vTyI~D-- 513 (559)
+.+.|++..- ... .++++|.+.+..++.++..... ....-+|+++... +.+.. .+..+. ..|++|++|..
T Consensus 48 ~r~~la~~lg--~~~~~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~--~~s~~~~~~~~~~~~g~~v~~i~~~~ 123 (371)
T PF00266_consen 48 AREALAKLLG--APPDEEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNE--HPSNRYPWEEIAKRKGAEVRVIPADP 123 (371)
T ss_dssp HHHHHHHHHT--SSTTEEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESS--HHHHHHHHHHHHHHTTEEEEEEEEGT
T ss_pred HHHHHHHhcC--Cccccccccccccchhhhhhhhcccccccccccccccccc--ccccccccccccccchhhhccccccc
Confidence 4455554331 233 4667776666655555555421 2233466666542 33444 245555 68999998864
Q ss_pred ------chHHHHh-ccccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 514 ------NAISYII-HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 514 ------sAvs~iM-~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
..+...+ ++.+.|++-. .-..+|. .+. -..|+-+||++++.
T Consensus 124 ~~~~~~~~~~~~l~~~~~lv~~~~-~~~~tG~-~~p--i~~I~~~~~~~~~~ 171 (371)
T PF00266_consen 124 GGSLDLEDLEEALNPDTRLVSISH-VENSTGV-RNP--IEEIAKLAHEYGAL 171 (371)
T ss_dssp TSSCSHHHHHHHHHTTESEEEEES-BETTTTB-BSS--HHHHHHHHHHTTSE
T ss_pred cchhhhhhhhhhhccccceEEeec-ccccccE-Eee--eceehhhhhccCCc
Confidence 2233333 3456664433 3344554 333 44677788888765
No 182
>COG2014 Uncharacterized conserved protein [Function unknown]
Probab=35.81 E-value=61 Score=33.36 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=47.2
Q ss_pred HhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEE
Q 008627 449 VTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (559)
Q Consensus 449 a~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlL 528 (559)
.++|..+|.|--+++=+-.--.++... .+|.||+.|-.|.+- +--..+|.....+++++|.+++
T Consensus 107 l~li~~~d~IkmI~~fg~m~p~v~~l~---ek~~v~~~er~~~~p-------------kr~t~~d~~e~~iLP~~Dvii~ 170 (250)
T COG2014 107 LDLIQRDDKIKMIAEFGNMPPVVRTLK---EKFEVYVFERNPKLP-------------KRGTLSDTLEYQILPEVDVIIA 170 (250)
T ss_pred HHHHcCCCceeEEEecCCCChHHHHhh---hheEEEEeccCccCc-------------ccccccchhhhhhcccccEEEE
Confidence 446777764444333222222333332 579999998777642 1223678888889999999999
Q ss_pred cceeeecCCc
Q 008627 529 GASSVLSNGT 538 (559)
Q Consensus 529 GAdaIlaNGs 538 (559)
.|.+++ ||+
T Consensus 171 SaStlv-N~T 179 (250)
T COG2014 171 SASTLV-NGT 179 (250)
T ss_pred echhhh-cCc
Confidence 998876 664
No 183
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit. Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.
Probab=35.74 E-value=2.6e+02 Score=28.50 Aligned_cols=41 Identities=22% Similarity=0.316 Sum_probs=26.8
Q ss_pred HHHhcccCCCEEEEecCc--HHHHHHHHHHHHhC-CceEEEEcC
Q 008627 447 HAVTKIRDGDVLLTYGSS--SAVEMILQHAHELG-KQFRVVIVD 487 (559)
Q Consensus 447 ~Aa~~I~dGdvILT~g~S--stV~~iL~~A~e~G-k~FrViVvE 487 (559)
.|..+|+||++|..=|+. +.=..++....+++ +.+++|-..
T Consensus 11 eAv~~I~DG~ti~~gGf~~~~~P~ali~~l~r~~~~~Ltlv~~~ 54 (222)
T TIGR02429 11 EAVSVIPDGATIMIGGFGTAGQPFELIDALIDTGAKDLTIVSNN 54 (222)
T ss_pred HHHhhCCCCCEEEECCcCCccCcHHHHHHHHhcCCCCcEEEecC
Confidence 355689999999987753 44445555545555 557877644
No 184
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=35.71 E-value=1.4e+02 Score=29.07 Aligned_cols=93 Identities=13% Similarity=0.040 Sum_probs=50.4
Q ss_pred EEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe---cchHHHHhccccEEEEcceeee
Q 008627 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH---INAISYIIHEVTRVFLGASSVL 534 (559)
Q Consensus 458 ILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~---DsAvs~iM~~VdkVlLGAdaIl 534 (559)
||.+|-++.+-.-+.++... ..++|.++=-.+ -...+..|...|+.+.... ..++...++.+|.||+--....
T Consensus 1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~---~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~ 76 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDP---SSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSH 76 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSS---HHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSC
T ss_pred CEEECCccHHHHHHHHHHHh-CCCCcEEEEecc---chhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcch
Confidence 67888876664444433322 445655552222 3456888888998765443 2567777888888875432221
Q ss_pred cCCceecccchHHHHHHHhhCCCC
Q 008627 535 SNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 535 aNGsVvNKvGT~~IALaAk~~~VP 558 (559)
..-. -....++-+|++.||.
T Consensus 77 ---~~~~-~~~~~li~Aa~~agVk 96 (233)
T PF05368_consen 77 ---PSEL-EQQKNLIDAAKAAGVK 96 (233)
T ss_dssp ---CCHH-HHHHHHHHHHHHHT-S
T ss_pred ---hhhh-hhhhhHHHhhhccccc
Confidence 1111 1233455566666653
No 185
>PRK07324 transaminase; Validated
Probab=35.64 E-value=1.8e+02 Score=30.74 Aligned_cols=100 Identities=15% Similarity=0.216 Sum_probs=55.2
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc----------hHHHHhc
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH 521 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds----------Avs~iM~ 521 (559)
+....+|+|.|.+..+..++......|. +|++. .|.+.+.. ..+...|..+.++... ++...+.
T Consensus 78 ~~~~~vi~t~G~~~al~~~~~~l~~~gd--~Vl~~--~P~y~~~~--~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~ 151 (373)
T PRK07324 78 VKPENILQTNGATGANFLVLYALVEPGD--HVISV--YPTYQQLY--DIPESLGAEVDYWQLKEENGWLPDLDELRRLVR 151 (373)
T ss_pred CChhhEEEcCChHHHHHHHHHHhCCCCC--EEEEc--CCCchhHH--HHHHHcCCEEEEEecccccCCCCCHHHHHHhCC
Confidence 4445678888888777666655544443 45553 46665443 2233467777776521 2222232
Q ss_pred -cccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 522 -~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
++..|++- .-=-..|.++++.--..|+-+|++|++.
T Consensus 152 ~~~kli~i~-~p~NPtG~~~~~~~l~~i~~~a~~~~~~ 188 (373)
T PRK07324 152 PNTKLICIN-NANNPTGALMDRAYLEEIVEIARSVDAY 188 (373)
T ss_pred CCCcEEEEe-CCCCCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 34444333 2223446666655556777778888864
No 186
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=35.26 E-value=2.3e+02 Score=32.53 Aligned_cols=89 Identities=18% Similarity=0.348 Sum_probs=65.3
Q ss_pred chHHHHHHHHHHHHHHHHhcCchhhh-HHHHHHHHHHHHHh-cc-------------------CCCCHHHHHHHHHHHHH
Q 008627 372 TLSRDLTAKISSYVSFLIDCRPLSVS-MGNAIRFLKSQIAK-IP-------------------ISLSESEAKATLHSDIE 430 (559)
Q Consensus 372 ~lsrdL~~~L~~~i~~L~~aRPtsvs-mgNAIrrlk~~I~~-l~-------------------~~~s~~eaK~~L~e~Id 430 (559)
....+|.+.|...-+...+.+|.++. +||+..-+...+++ +. .+.+.+|+.+...+.-+
T Consensus 205 ~~~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~ee~~~lr~~dp~ 284 (545)
T TIGR01228 205 EQTDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVEDADKLRQEEPE 284 (545)
T ss_pred eEcCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHHHHHHHHHhCHH
Confidence 44667888888888888888999986 79998877766653 11 13467888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH---hcccCCCEEEEecCc
Q 008627 431 RFINEKIILADRVIVKHAV---TKIRDGDVLLTYGSS 464 (559)
Q Consensus 431 ~fI~ErI~~A~e~Ia~~Aa---~~I~dGdvILT~g~S 464 (559)
.|.+ .+.+.+++|.. ++-..|..+.-|||+
T Consensus 285 ~~~~----~~~~Sm~rhv~Am~~~~~~Ga~~fDYGN~ 317 (545)
T TIGR01228 285 AYVK----AAKQSMAKHVRAMLAFQKQGSVTFDYGNN 317 (545)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHCCCeeeeccHH
Confidence 8864 35677777653 444678888888886
No 187
>PRK09028 cystathionine beta-lyase; Provisional
Probab=35.20 E-value=2.5e+02 Score=30.74 Aligned_cols=92 Identities=23% Similarity=0.212 Sum_probs=50.5
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH-HHH-HHHHhCCCceEEEec---chHHHHhc-cccEEEEc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~-~LA-k~L~~~GI~vTyI~D---sAvs~iM~-~VdkVlLG 529 (559)
++++|-|-+..+..++....+.|. +|++.+ |.+.|- .++ ..|...|+++.++.. ..+...+. +...|++-
T Consensus 78 ~~~~~~sG~~Ai~~~l~all~~GD--~Vvv~~--~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~~e~l~~~l~~~TklV~le 153 (394)
T PRK09028 78 GTALYPSGAAAISNALLSFLKAGD--HLLMVD--SCYEPTRDLCDKILKGFGIETTYYDPMIGEGIRELIRPNTKVLFLE 153 (394)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEEC--CCcHHHHHHHHHhhhhcceEEEEECCCCHHHHHHhcCcCceEEEEE
Confidence 456666655566555555444453 566664 445444 344 346668898887742 33554554 34444432
Q ss_pred ceeeecCCceecccc----hHHHHHHHhhCCCCC
Q 008627 530 ASSVLSNGTVCSRVG----TACVAMVAYGFHIPV 559 (559)
Q Consensus 530 AdaIlaNGsVvNKvG----T~~IALaAk~~~VPV 559 (559)
. .-|..| -..|+-+|+++|+.+
T Consensus 154 --s------psNPtg~v~dl~~I~~la~~~g~~l 179 (394)
T PRK09028 154 --S------PGSITMEVQDVPTLSRIAHEHDIVV 179 (394)
T ss_pred --C------CCCCCCcHHHHHHHHHHHHHcCCEE
Confidence 1 233334 245667788888753
No 188
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=35.18 E-value=2.9e+02 Score=30.43 Aligned_cols=96 Identities=18% Similarity=0.239 Sum_probs=52.0
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH-HH-HHHHHhCCCceEEEecc---hHHHHhc-cccEEEEc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LL-LRRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~-~L-Ak~L~~~GI~vTyI~Ds---Avs~iM~-~VdkVlLG 529 (559)
+.|+|-+-+..+..+|....+.|. +|++.+ +.+.|- .+ ...+...|+++.++... ++-..+. ++..|++-
T Consensus 81 ~al~~~sG~~Ai~~al~~ll~~GD--~Vlv~~--~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e~l~~ai~~~tklV~l~ 156 (431)
T PRK08248 81 GALAVSSGQAAITYSILNIASAGD--EIVSSS--SLYGGTYNLFAHTLPKLGITVKFVDPSDPENFEAAITDKTKALFAE 156 (431)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEcc--CchhhHHHHHHHHHHhCCEEEEEECCCCHHHHHHhcCCCCeEEEEE
Confidence 567777777766666665544443 555554 444443 22 34466678888887532 3333343 35555541
Q ss_pred ceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.---..|.++.- ..|+-+|+.++++|
T Consensus 157 -sp~NPtG~v~di---~~I~~la~~~gi~v 182 (431)
T PRK08248 157 -TIGNPKGDVLDI---EAVAAIAHEHGIPL 182 (431)
T ss_pred -CCCCCCCcccCH---HHHHHHHHHcCCEE
Confidence 111223444432 35677788888764
No 189
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=35.08 E-value=2.6e+02 Score=27.49 Aligned_cols=105 Identities=15% Similarity=0.180 Sum_probs=65.1
Q ss_pred HHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCC---Cc-----------hHH----HHHHHHHhC-
Q 008627 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP---KH-----------EGK----LLLRRLVRK- 504 (559)
Q Consensus 444 Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP---~~-----------EG~----~LAk~L~~~- 504 (559)
+...+.++|.+ .+||..|..++-..+++.....|-. +++++|... .+ -|+ .++++|.+.
T Consensus 11 ~g~~~q~kl~~-~~VlviG~GglGs~ia~~La~~Gv~-~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (202)
T TIGR02356 11 IGEEGQQRLLN-SHVLIIGAGGLGSPAALYLAGAGVG-TIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN 88 (202)
T ss_pred cCHHHHHHhcC-CCEEEECCCHHHHHHHHHHHHcCCC-eEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC
Confidence 45556667754 6799999998888888887776743 555555331 01 121 345666654
Q ss_pred -CCceEEEec----chHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 505 -GLSCTYTHI----NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 505 -GI~vTyI~D----sAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.++++.+.. ..+..++.++|.||...|.+- --..+.-.|+.+++|+
T Consensus 89 p~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~---------~r~~l~~~~~~~~ip~ 139 (202)
T TIGR02356 89 SDIQVTALKERVTAENLELLINNVDLVLDCTDNFA---------TRYLINDACVALGTPL 139 (202)
T ss_pred CCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHH---------HHHHHHHHHHHcCCCE
Confidence 355554432 234556788999888766532 1234667888899985
No 190
>PRK08462 biotin carboxylase; Validated
Probab=35.01 E-value=58 Score=35.47 Aligned_cols=80 Identities=16% Similarity=0.132 Sum_probs=48.1
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCc--hHHHHHHHHHhCCCc---eEEEecchHHHHhc--cccEEEE
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKH--EGKLLLRRLVRKGLS---CTYTHINAISYIIH--EVTRVFL 528 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~--EG~~LAk~L~~~GI~---vTyI~DsAvs~iM~--~VdkVlL 528 (559)
.+||..+++.....+++.|++.| ++||++.+.+.. .+..+|-+....|-. -.|+...++-.+.+ ++|.|+-
T Consensus 5 k~ili~~~g~~~~~~~~~~~~~G--~~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~p 82 (445)
T PRK08462 5 KRILIANRGEIALRAIRTIQEMG--KEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFP 82 (445)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC--CCEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEE
Confidence 47999999999999999999877 467777665544 344333221111111 13333234444443 5899998
Q ss_pred cceeeecCC
Q 008627 529 GASSVLSNG 537 (559)
Q Consensus 529 GAdaIlaNG 537 (559)
|.+-+..|.
T Consensus 83 g~g~lse~~ 91 (445)
T PRK08462 83 GYGFLSENQ 91 (445)
T ss_pred CCCccccCH
Confidence 876544443
No 191
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.
Probab=34.91 E-value=3.7e+02 Score=26.43 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhCCceEEEEcCCCCCch--HHHHHHHHHhCCCceEEEe-cchHHHHhcc-----------ccEEEEcce
Q 008627 467 VEMILQHAHELGKQFRVVIVDSRPKHE--GKLLLRRLVRKGLSCTYTH-INAISYIIHE-----------VTRVFLGAS 531 (559)
Q Consensus 467 V~~iL~~A~e~Gk~FrViVvESRP~~E--G~~LAk~L~~~GI~vTyI~-DsAvs~iM~~-----------VdkVlLGAd 531 (559)
+...+....++|++ -|+++..-|.+- |..+++.|.+.|+++++|+ .+++.+++.. .+..|++++
T Consensus 66 ~~~~i~~~~~~g~~-V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a~~g~~l~~~~~~~~~~i~~~~ 143 (236)
T TIGR01469 66 INRLLVELAREGKK-VVRLKGGDPFVFGRGGEEAEALAEAGIPFEVVPGVTSAIAAAAYAGIPLTHRGVASSVTFVTGH 143 (236)
T ss_pred HHHHHHHHHHCCCe-EEEEeCcCcccccCHHHHHHHHHHCCCCEEEECCccHHHHHHHHcCCCcccCCCcceEEEEEcc
Confidence 33444444445553 344577888764 5677889998999999999 6777777663 156777654
No 192
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=34.70 E-value=1.6e+02 Score=32.99 Aligned_cols=85 Identities=19% Similarity=0.271 Sum_probs=57.4
Q ss_pred HHHHHHHHhcccCCCEEEEecCc-------HHH-HHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec
Q 008627 442 RVIVKHAVTKIRDGDVLLTYGSS-------SAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI 513 (559)
Q Consensus 442 e~Ia~~Aa~~I~dGdvILT~g~S-------stV-~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D 513 (559)
+..++...+.|..++.|+.|+.- +++ ..+|.. .|..+.+++....-...| ....+...+.+..+++|
T Consensus 23 ~~a~~~i~~ai~~~~~I~I~~d~DaDGitS~ail~~~L~~---~g~~~~~~ip~~~~~~~g--~~~~~~~~~~~liItvD 97 (491)
T COG0608 23 EKAAARIAEAIEKGEKILIYGDYDADGITSAAILAKALRR---LGADVDYYIPNRFEEGYG--AIRKLKEEGADLIITVD 97 (491)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCcccHHHHHHHHHHHHH---cCCceEEEeCCCccccch--HHHHHHhcCCCEEEEEC
Confidence 44555556678888888888752 222 233333 488899999887655555 44478889999999999
Q ss_pred chHHHHhc--c-----ccEEEEcce
Q 008627 514 NAISYIIH--E-----VTRVFLGAS 531 (559)
Q Consensus 514 sAvs~iM~--~-----VdkVlLGAd 531 (559)
+..+++=. . +|.|++==|
T Consensus 98 ~G~~~~~~i~~~~~~g~~vIVtDHH 122 (491)
T COG0608 98 NGSGSLEEIARAKELGIDVIVTDHH 122 (491)
T ss_pred CCcccHHHHHHHHhCCCcEEEECCC
Confidence 88877632 2 666665544
No 193
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=34.64 E-value=1.8e+02 Score=29.27 Aligned_cols=73 Identities=21% Similarity=0.298 Sum_probs=42.4
Q ss_pred EEEecCcHHHHHHHHHHHHhCC-ceEE-EEcCCCCCchHHHHHHHHHhCCCceEEEe----------cchHHHHhc--cc
Q 008627 458 LLTYGSSSAVEMILQHAHELGK-QFRV-VIVDSRPKHEGKLLLRRLVRKGLSCTYTH----------INAISYIIH--EV 523 (559)
Q Consensus 458 ILT~g~SstV~~iL~~A~e~Gk-~FrV-iVvESRP~~EG~~LAk~L~~~GI~vTyI~----------DsAvs~iM~--~V 523 (559)
||.=|+-+..+. |.++.+.|. +.+| +|+=++|...+.+.|++ .||+|.++. +..+-..|+ ++
T Consensus 4 vl~Sg~Gsn~~a-l~~~~~~~~l~~~i~~visn~~~~~~~~~A~~---~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (207)
T PLN02331 4 VFVSGGGSNFRA-IHDACLDGRVNGDVVVVVTNKPGCGGAEYARE---NGIPVLVYPKTKGEPDGLSPDELVDALRGAGV 79 (207)
T ss_pred EEEeCCChhHHH-HHHHHHcCCCCeEEEEEEEeCCCChHHHHHHH---hCCCEEEeccccCCCcccchHHHHHHHHhcCC
Confidence 455455555554 445555453 4454 44456688877766655 599987654 234444455 58
Q ss_pred cEEEE-cceeee
Q 008627 524 TRVFL-GASSVL 534 (559)
Q Consensus 524 dkVlL-GAdaIl 534 (559)
|.+|+ |-..|+
T Consensus 80 Dliv~agy~~il 91 (207)
T PLN02331 80 DFVLLAGYLKLI 91 (207)
T ss_pred CEEEEeCcchhC
Confidence 98887 444443
No 194
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=34.58 E-value=6.9e+02 Score=27.89 Aligned_cols=111 Identities=10% Similarity=0.097 Sum_probs=59.2
Q ss_pred hhhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHH
Q 008627 394 LSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQH 473 (559)
Q Consensus 394 tsvsmgNAIrrlk~~I~~l~~~~s~~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~ 473 (559)
.-+.+.+.-+||+....-.....+ + .+++|+- ...+.+.+....++ .|..+..++.+..+..+-.-
T Consensus 258 ~P~G~~~T~~~l~~ia~~~g~~~~-----e-------~i~~er~-~~~~~~~~~~~~~l-~Gkrv~i~g~~~~~~~l~~f 323 (454)
T cd01973 258 TPIGIKNTDAFLQNIKELTGKPIP-----E-------SLVRERG-IAIDALADLAHMFF-ANKKVAIFGHPDLVIGLAEF 323 (454)
T ss_pred CCcChHHHHHHHHHHHHHHCCCCC-----H-------HHHHHHH-HHHHHHHHHHHHHh-CCCeEEEEcCHHHHHHHHHH
Confidence 345677777777665543321111 1 1222321 22334444333334 57888888888777666555
Q ss_pred HHHhCCceEEEEcCC-CCCchHHHHHHHHHh-CCCceEEEecchHHH
Q 008627 474 AHELGKQFRVVIVDS-RPKHEGKLLLRRLVR-KGLSCTYTHINAISY 518 (559)
Q Consensus 474 A~e~Gk~FrViVvES-RP~~EG~~LAk~L~~-~GI~vTyI~DsAvs~ 518 (559)
..+.|-...++++-+ .+.++.....++|.+ .+..+.++.+.-...
T Consensus 324 l~elGm~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~~~d~~e 370 (454)
T cd01973 324 CLEVEMKPVLLLLGDDNSKYKKDPRIKALKEKADYDMEIVTNADLWE 370 (454)
T ss_pred HHHCCCeEEEEEECCCCcccchhHHHHHHHhhcCCCceEEECCCHHH
Confidence 567787766655544 555556666666643 344445555544443
No 195
>PF14468 DUF4427: Protein of unknown function (DUF4427)
Probab=34.58 E-value=1.8e+02 Score=27.54 Aligned_cols=58 Identities=17% Similarity=0.230 Sum_probs=37.0
Q ss_pred CCEEEEecCcHHHHHHHHHHH-----HhCCc-eEEEEcCC-CCCchHHHHHHHHHh-----CCCceEEEe
Q 008627 455 GDVLLTYGSSSAVEMILQHAH-----ELGKQ-FRVVIVDS-RPKHEGKLLLRRLVR-----KGLSCTYTH 512 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~-----e~Gk~-FrViVvES-RP~~EG~~LAk~L~~-----~GI~vTyI~ 512 (559)
|..|-.+.+.+-|.+.|+.+- +.|+= ..+=-.++ +|+.+-..||+.|++ .||.|.|.+
T Consensus 37 ~~wvWi~DN~~~~vRALl~~grV~v~~eGRYLl~l~~~~s~~plr~kE~~ak~vA~~L~~rF~vea~yfS 106 (132)
T PF14468_consen 37 NAWVWIHDNQSEVVRALLQAGRVKVNKEGRYLLDLDLFDSDWPLRKKEAMAKHVAGWLRHRFGVEAGYFS 106 (132)
T ss_pred ceEEEEecCcCHHHHHHHHcCceeeccCceeeeecccccCCCchHHHHHHHHHHHHHHHHHhCcceeEEE
Confidence 456777777666666666652 12221 12222345 899988899888875 499988875
No 196
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=34.56 E-value=1.3e+02 Score=32.09 Aligned_cols=7 Identities=0% Similarity=-0.315 Sum_probs=2.7
Q ss_pred ceEEEec
Q 008627 507 SCTYTHI 513 (559)
Q Consensus 507 ~vTyI~D 513 (559)
+..+++|
T Consensus 135 d~llflD 141 (384)
T TIGR03469 135 DYLLLTD 141 (384)
T ss_pred CEEEEEC
Confidence 3344433
No 197
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=34.32 E-value=2.6e+02 Score=29.62 Aligned_cols=102 Identities=17% Similarity=0.081 Sum_probs=53.3
Q ss_pred ccCC-CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc----------hHHHHh
Q 008627 452 IRDG-DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYII 520 (559)
Q Consensus 452 I~dG-dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds----------Avs~iM 520 (559)
+... .+++|.|.+..+..++....+.|....|++. .|.+.+.... ....|+++..+... .+-..+
T Consensus 87 ~~~~~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~--~P~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~ 162 (393)
T TIGR03538 87 VDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMP--NPFYQIYEGA--ALLAGAEPYFLNCTAENGFLPDFDAVPESV 162 (393)
T ss_pred CCCCceEEECCCcHHHHHHHHHHHcCCCCcceEEec--CCCCcchHHH--HHhcCCeEEEeeccccCCCCCCHHHHHHHH
Confidence 4443 4777888888877666665555543334443 5777665543 23467777766531 111111
Q ss_pred -ccccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 521 -HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 521 -~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
+++..|++- .-=-+-|.++++-=-..|+-+|+.|++.
T Consensus 163 ~~~~k~i~l~-~p~NPtG~~~s~~~~~~l~~~a~~~~~~ 200 (393)
T TIGR03538 163 WRRCQLLFVC-SPGNPTGAVLSLDTLKKLIELADQYGFI 200 (393)
T ss_pred hhcceEEEEe-CCCCCcCcccCHHHHHHHHHHHHHCCEE
Confidence 234455441 1111124444433335566677888764
No 198
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=34.30 E-value=1.1e+02 Score=33.27 Aligned_cols=94 Identities=15% Similarity=0.147 Sum_probs=65.1
Q ss_pred CcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH----HHHHHHHhC--CCceEEEecch--HHHHhccccEEEEcceeee
Q 008627 463 SSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK----LLLRRLVRK--GLSCTYTHINA--ISYIIHEVTRVFLGASSVL 534 (559)
Q Consensus 463 ~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~----~LAk~L~~~--GI~vTyI~DsA--vs~iM~~VdkVlLGAdaIl 534 (559)
+..++..+|+.|-+.+..+-+-+.++.=.+-|. .|++.+++. .|||.+-+|-+ ...+++-++ .|-.+|+
T Consensus 25 n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValHLDHg~~~e~i~~Ai~---~GFtSVM 101 (347)
T TIGR01521 25 NMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMHQDHGNSPATCQRAIQ---LGFTSVM 101 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHH---cCCCEEe
Confidence 346777777777766655433333332233343 345666653 38999999966 455555444 4999999
Q ss_pred cCCcee-----------cccchHHHHHHHhhCCCCC
Q 008627 535 SNGTVC-----------SRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 535 aNGsVv-----------NKvGT~~IALaAk~~~VPV 559 (559)
-||+-. |--=|..++-.||.+||.|
T Consensus 102 iDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsV 137 (347)
T TIGR01521 102 MDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASV 137 (347)
T ss_pred ecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 999988 8889999999999999875
No 199
>PRK06836 aspartate aminotransferase; Provisional
Probab=34.21 E-value=2.9e+02 Score=29.38 Aligned_cols=96 Identities=17% Similarity=0.207 Sum_probs=50.8
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc---------hHHHHhc-
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYIIH- 521 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds---------Avs~iM~- 521 (559)
+....+|+|.|.+..+..++......| -.|++.+ |.+.+... .+...|+++.++... .+...+.
T Consensus 94 ~~~~~i~~t~G~~~al~~~~~~l~~~g--d~Vli~~--p~~~~~~~--~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~ 167 (394)
T PRK06836 94 LTADHIVMTCGAAGALNVALKAILNPG--DEVIVFA--PYFVEYRF--YVDNHGGKLVVVPTDTDTFQPDLDALEAAITP 167 (394)
T ss_pred CCcCcEEEeCChHHHHHHHHHHhcCCC--CEEEEcC--CCCccHHH--HHHHcCCEEEEEecCCccCcCCHHHHHhhcCc
Confidence 455567888877776655555443333 3555544 77766433 344678888887532 1222222
Q ss_pred cccEEEEcceeeecCCceecccchHHHHHHHhh
Q 008627 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG 554 (559)
Q Consensus 522 ~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~ 554 (559)
++..|++ .+.--..|.++..---..++-+|+.
T Consensus 168 ~~~~v~~-~~p~NPtG~~~~~~~~~~l~~la~~ 199 (394)
T PRK06836 168 KTKAVII-NSPNNPTGVVYSEETLKALAALLEE 199 (394)
T ss_pred CceEEEE-eCCCCCCCcCCCHHHHHHHHHHHHH
Confidence 3444444 2333334555554444556656665
No 200
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=34.13 E-value=5.5e+02 Score=26.59 Aligned_cols=97 Identities=18% Similarity=0.169 Sum_probs=47.2
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHH-HHHHHHh-CCCceEEEecch--------HHHHhccccE
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LLRRLVR-KGLSCTYTHINA--------ISYIIHEVTR 525 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~-LAk~L~~-~GI~vTyI~DsA--------vs~iM~~Vdk 525 (559)
.+++|.|.+..+..++....+. .-+|++.+ +.+.+.. ....+.+ .|+++.++.... +-..+.+=.+
T Consensus 64 ~v~~~~g~t~al~~~~~~~~~~--gd~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~ 139 (376)
T TIGR01977 64 HVVFTNNATTALNIALKGLLKE--GDHVITTP--MEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKTNTK 139 (376)
T ss_pred eEEEeCCHHHHHHHHHHhccCC--CCEEEECc--chhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCCCCe
Confidence 5666666666665555443232 34666654 3333321 1233333 488888775321 2222222123
Q ss_pred EEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 526 VlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+++-.+.-...|.++. -..|+-+|++++++|
T Consensus 140 ~v~~~~~~n~tG~~~~---~~~i~~l~~~~~~~l 170 (376)
T TIGR01977 140 LIVVSHASNVTGTILP---IEEIGELAQENGIFF 170 (376)
T ss_pred EEEEECCCCCccccCC---HHHHHHHHHHcCCEE
Confidence 3333333334555443 235777788888764
No 201
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=33.90 E-value=3.2e+02 Score=30.91 Aligned_cols=79 Identities=19% Similarity=0.264 Sum_probs=47.9
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH----------------HHHHHHHhCCCceEEEe---
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK----------------LLLRRLVRKGLSCTYTH--- 512 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~----------------~LAk~L~~~GI~vTyI~--- 512 (559)
+..|+.|+.+|-...=+.+...+.+.| .+|+|+|..+...|. .-...+.+.|+++.+-.
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G--~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~ 211 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMG--HAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVG 211 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence 567899999998865555555666655 479999976654321 11334566787655432
Q ss_pred -cchHHHHhccccEEEEccee
Q 008627 513 -INAISYIIHEVTRVFLGASS 532 (559)
Q Consensus 513 -DsAvs~iM~~VdkVlLGAda 532 (559)
|-.+..+....|.||+..-+
T Consensus 212 ~~~~~~~~~~~~D~Vi~AtG~ 232 (564)
T PRK12771 212 EDITLEQLEGEFDAVFVAIGA 232 (564)
T ss_pred CcCCHHHHHhhCCEEEEeeCC
Confidence 11233334467888876543
No 202
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=33.87 E-value=1.9e+02 Score=27.88 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=34.1
Q ss_pred CCEEEEecCcHHH-HHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEE
Q 008627 455 GDVLLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT 511 (559)
Q Consensus 455 GdvILT~g~SstV-~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI 511 (559)
|.+||+.|-++-+ ..+.+...+.| .+|+++..|......+++.++...|-.+.++
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g--~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 59 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEG--YDIAVNYARSRKAAEETAEEIEALGRKALAV 59 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHHHhcCCeEEEE
Confidence 4567777777655 44555555544 4677666666556667777777666555444
No 203
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=33.79 E-value=3e+02 Score=23.39 Aligned_cols=76 Identities=13% Similarity=0.187 Sum_probs=41.7
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEc-CCCCCchHHHHHHHHHhCCCceEEEecchHH--HHhccccEEE
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIV-DSRPKHEGKLLLRRLVRKGLSCTYTHINAIS--YIIHEVTRVF 527 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVv-ESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs--~iM~~VdkVl 527 (559)
....+..+|.|+.+......+....++ ..+.++++ .+-+..+...+...+.+..+ ..+++-.+++ .=++.++.|+
T Consensus 24 ~~~~~~~~lvf~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~f~~~~~-~ili~t~~~~~G~d~~~~~~vi 101 (131)
T cd00079 24 HLKKGGKVLIFCPSKKMLDELAELLRK-PGIKVAALHGDGSQEEREEVLKDFREGEI-VVLVATDVIARGIDLPNVSVVI 101 (131)
T ss_pred cccCCCcEEEEeCcHHHHHHHHHHHHh-cCCcEEEEECCCCHHHHHHHHHHHHcCCC-cEEEEcChhhcCcChhhCCEEE
Confidence 333677899999887665566665543 23444444 33344555566666766553 4444433333 3344566555
Q ss_pred E
Q 008627 528 L 528 (559)
Q Consensus 528 L 528 (559)
+
T Consensus 102 ~ 102 (131)
T cd00079 102 N 102 (131)
T ss_pred E
Confidence 3
No 204
>PRK08960 hypothetical protein; Provisional
Probab=33.75 E-value=2.9e+02 Score=29.18 Aligned_cols=55 Identities=15% Similarity=0.098 Sum_probs=31.0
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~ 512 (559)
+..+++++|.|.+..+..++....+.| -+|+|. .|.+.+....-. ..|..+..+.
T Consensus 90 ~~~~~i~it~G~~~al~~~~~~~~~~g--d~vlv~--~p~y~~~~~~~~--~~g~~~~~v~ 144 (387)
T PRK08960 90 VDPERILVTPGGSGALLLASSLLVDPG--KHWLLA--DPGYPCNRHFLR--LVEGAAQLVP 144 (387)
T ss_pred CChhhEEEccCcHHHHHHHHHHhcCCC--CEEEEc--CCCCcchHHHHH--hcCCeEEEEe
Confidence 556678888888887766655443333 355553 366655443222 2455555553
No 205
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=33.71 E-value=2.6e+02 Score=31.01 Aligned_cols=13 Identities=38% Similarity=0.345 Sum_probs=8.2
Q ss_pred HHHHHHhhCCCCC
Q 008627 547 CVAMVAYGFHIPV 559 (559)
Q Consensus 547 ~IALaAk~~~VPV 559 (559)
.|+-+|+++|++|
T Consensus 176 ~I~~la~~~gi~l 188 (436)
T PRK07812 176 GVAEVAHEAGVPL 188 (436)
T ss_pred HHHHHHHHcCCEE
Confidence 4666677776653
No 206
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=33.68 E-value=3.2e+02 Score=29.54 Aligned_cols=96 Identities=16% Similarity=0.071 Sum_probs=44.5
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchH-HHHHHHHHh-CCCceEEEec---chHHHHhc-cccEEEEc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLLRRLVR-KGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG-~~LAk~L~~-~GI~vTyI~D---sAvs~iM~-~VdkVlLG 529 (559)
++|+|-|-+..+..+|....+.| -+|++.+ |.+.| ..+...+.. .|+.++++.. .++...+. +...|++-
T Consensus 69 ~~i~~~sg~~Ai~~~l~~l~~~G--D~Vl~~~--~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~ 144 (386)
T PRK08045 69 GAVLTNTGMSAIHLVTTVFLKPG--DLLVAPH--DCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVE 144 (386)
T ss_pred eEEEECCHHHHHHHHHHHHcCCC--CEEEEcC--CCcHHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEE
Confidence 45555555555555544433333 2455443 55554 344444443 3456666531 22333332 34455541
Q ss_pred ceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.---..|.++. -..|+-+|+.++++|
T Consensus 145 -sP~NPtG~v~d---i~~I~~ia~~~g~~v 170 (386)
T PRK08045 145 -SPSNPLLRVVD---IAKICHLAREAGAVS 170 (386)
T ss_pred -CCCCCCCEecC---HHHHHHHHHHcCCEE
Confidence 11122344433 235666677777653
No 207
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=33.65 E-value=90 Score=36.81 Aligned_cols=51 Identities=27% Similarity=0.254 Sum_probs=34.6
Q ss_pred cCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH--HHHHHHHhCCCceEEEe
Q 008627 462 GSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK--LLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 462 g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~--~LAk~L~~~GI~vTyI~ 512 (559)
+..+-|...|..|+++|++.+|+|-=-.=..|+. ..+++|.++|+.|.|-.
T Consensus 368 ~~~s~ii~aL~~Aa~~Gk~V~v~veLkArfde~~ni~wa~~le~aG~~viyg~ 420 (672)
T TIGR03705 368 SKDSPIIDALIEAAENGKEVTVVVELKARFDEEANIRWARRLEEAGVHVVYGV 420 (672)
T ss_pred cCCcHHHHHHHHHHHcCCEEEEEEEehhhccchhhHHHHHHHHHcCCEEEEcC
Confidence 4334455778888889999888775111122333 45899999999999844
No 208
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=33.61 E-value=3.4e+02 Score=29.58 Aligned_cols=95 Identities=18% Similarity=0.227 Sum_probs=50.5
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH-HH-HHHHHhCCCceEEEec---chHHHHhc-cccEEEEc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LL-LRRLVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~-~L-Ak~L~~~GI~vTyI~D---sAvs~iM~-~VdkVlLG 529 (559)
+.|+|-+-+..+..+|....+.|. +|++. .+.+.|- .+ ...+...|+.++++.. .++-..+. +...|++
T Consensus 74 ~~v~~~sG~~Ai~~al~~l~~~Gd--~Vl~~--~~~y~~t~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~t~~V~l- 148 (418)
T TIGR01326 74 AALAVASGQAAITYAILNLAQAGD--NIVSS--SYLYGGTYNLFKHTLKRLGIEVRFVDPDDPEEFEKAIDENTKAVFA- 148 (418)
T ss_pred eEEEEccHHHHHHHHHHHHhCCCC--EEEEE--CCCcHHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEE-
Confidence 456666666666666665554443 45554 3555553 22 3445567888888763 23333333 3455554
Q ss_pred ceee-ecCCceecccchHHHHHHHhhCCCCC
Q 008627 530 ASSV-LSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 530 AdaI-laNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+.. -.+|.+.. -..|+-+|+++++++
T Consensus 149 -e~p~NPtg~v~d---l~~I~~la~~~~i~l 175 (418)
T TIGR01326 149 -ETIGNPAINVPD---IEAIAEVAHAHGVPL 175 (418)
T ss_pred -ECCCCCCCeecC---HHHHHHHHHHcCCEE
Confidence 222 12233332 245666788888764
No 209
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=33.53 E-value=50 Score=33.93 Aligned_cols=57 Identities=25% Similarity=0.307 Sum_probs=34.7
Q ss_pred hcccCCCEEEEecC----cHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHH----HHHHHhCCCc
Q 008627 450 TKIRDGDVLLTYGS----SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL----LRRLVRKGLS 507 (559)
Q Consensus 450 ~~I~dGdvILT~g~----SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~L----Ak~L~~~GI~ 507 (559)
+++.+|+.|+.++- |++...+...+.+ -..++|+|+||+-..-|..+ |.+|.+.|.+
T Consensus 73 ~l~~~~~~vi~i~iSs~lSgty~~a~~aa~~-~~~~~i~ViDS~~~s~~~g~~v~~a~~~~~~G~s 137 (275)
T TIGR00762 73 KLLEEGDEVLSIHLSSGLSGTYQSARQAAEM-VDEAKVTVIDSKSASMGLGLLVLEAAKLAEEGKS 137 (275)
T ss_pred HHHhCCCeEEEEEcCCchhHHHHHHHHHHhh-CCCCCEEEECChHHHHHHHHHHHHHHHHHHcCCC
Confidence 34455665666544 4666665544432 23458999999987655533 5667777764
No 210
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=33.35 E-value=1.9e+02 Score=30.30 Aligned_cols=91 Identities=16% Similarity=0.089 Sum_probs=49.9
Q ss_pred ccCCCEEEEecCcHHHHHHHHHH-HHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHh-ccccEEEEc
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHA-HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII-HEVTRVFLG 529 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A-~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM-~~VdkVlLG 529 (559)
+...++++|.|.+..+..++... ...|. .|+ ++ .|.+.+...+-+ ..|+++..+.+ +..+. .++..|++
T Consensus 84 ~~~~~I~it~G~~~~i~~~~~~l~~~~gd--~Vl-~~-~p~y~~~~~~~~--~~g~~~~~~~~--~~~l~~~~~~~v~~- 154 (364)
T PRK07865 84 LDPAAVLPVIGSKELVAWLPTLLGLGPGD--VVV-IP-ELAYPTYEVGAR--LAGATVVRADS--LTELGPQRPALIWL- 154 (364)
T ss_pred CCcccEEEccChHHHHHHHHHHHcCCCCC--EEE-EC-CCCcccHHHHHH--hcCCEEEecCC--hhhCCcccceEEEE-
Confidence 44568899999998876544443 23332 344 44 377766654333 35777776643 11111 12333332
Q ss_pred ceeeecCCceecccch-------HHHHHHHhhCCCC
Q 008627 530 ASSVLSNGTVCSRVGT-------ACVAMVAYGFHIP 558 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT-------~~IALaAk~~~VP 558 (559)
+ ..-|..|+ ..++-+|+++++.
T Consensus 155 ------~-~p~NPtG~~~~~~~~~~i~~~a~~~~~~ 183 (364)
T PRK07865 155 ------N-SPSNPTGRVLGVDHLRKVVAWARERGAV 183 (364)
T ss_pred ------c-CCCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence 3 24466663 3566677888865
No 211
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=33.24 E-value=4.6e+02 Score=27.19 Aligned_cols=98 Identities=15% Similarity=0.228 Sum_probs=51.7
Q ss_pred CEEEEecCcHHHHHHHHHHHHh-CCceEEEEcCCCCCchHHH-HHHHHH-hCCCceEEEecc--------hHHHHhc-cc
Q 008627 456 DVLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPKHEGKL-LLRRLV-RKGLSCTYTHIN--------AISYIIH-EV 523 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~-Gk~FrViVvESRP~~EG~~-LAk~L~-~~GI~vTyI~Ds--------Avs~iM~-~V 523 (559)
.+++|-|.+..+..++...... ++.-+|++.+ +.+-+.. ....+. ..|+.+.+|... .+-..+. ++
T Consensus 63 ~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~ 140 (373)
T cd06453 63 EIIFTRNTTEAINLVAYGLGRANKPGDEIVTSV--MEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTERT 140 (373)
T ss_pred eEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECc--chhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcCCc
Confidence 5667777766666666555431 1334566654 4443432 233343 578888888532 1222222 34
Q ss_pred cEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 524 dkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+.|++ .+.-...|.+.. + ..|+-+|+++++++
T Consensus 141 ~~v~~-~~~~~~tG~~~~-~--~~i~~~~~~~~~~l 172 (373)
T cd06453 141 KLVAV-THVSNVLGTINP-V--KEIGEIAHEAGVPV 172 (373)
T ss_pred eEEEE-eCcccccCCcCC-H--HHHHHHHHHcCCEE
Confidence 45544 222233455443 2 46777888888764
No 212
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=33.08 E-value=3.5e+02 Score=28.70 Aligned_cols=95 Identities=21% Similarity=0.236 Sum_probs=50.1
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH-HHHH-HHHhCCCceEEEecc---hHHHHhc-cccEEEEc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLR-RLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~-~LAk-~L~~~GI~vTyI~Ds---Avs~iM~-~VdkVlLG 529 (559)
+.|++-+-+..+..+|......|. +|++.+ +.+.+. .+.. .+...|+.+.++... .+...+. +...|++
T Consensus 57 ~a~~~~sG~~Ai~~~l~~l~~~gd--~Vl~~~--~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~- 131 (369)
T cd00614 57 AALAFSSGMAAISTVLLALLKAGD--HVVASD--DLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEAAIKPETKLVYV- 131 (369)
T ss_pred CEEEEcCHHHHHHHHHHHHcCCCC--EEEECC--CCcchHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhcCCCCeEEEE-
Confidence 566665555555555555444343 444433 455553 3333 345678998888643 3333443 3444544
Q ss_pred ceeeec-CCceecccchHHHHHHHhhCCCCC
Q 008627 530 ASSVLS-NGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 530 AdaIla-NGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+.+.. .|.+.. -..|+-+|+.||+++
T Consensus 132 -e~~~np~g~~~d---l~~i~~la~~~g~~l 158 (369)
T cd00614 132 -ESPTNPTLKVVD---IEAIAELAHEHGALL 158 (369)
T ss_pred -ECCCCCCCeecC---HHHHHHHHHHcCCEE
Confidence 23322 233332 235777888888864
No 213
>PRK07050 cystathionine beta-lyase; Provisional
Probab=32.93 E-value=3.9e+02 Score=28.95 Aligned_cols=14 Identities=7% Similarity=0.043 Sum_probs=8.5
Q ss_pred HHHHHHHhhCCCCC
Q 008627 546 ACVAMVAYGFHIPV 559 (559)
Q Consensus 546 ~~IALaAk~~~VPV 559 (559)
..|+-+|+.++++|
T Consensus 170 ~~I~~ia~~~gi~l 183 (394)
T PRK07050 170 PAITAAARARGVVT 183 (394)
T ss_pred HHHHHHHHHcCCEE
Confidence 44566677777653
No 214
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=32.85 E-value=75 Score=28.37 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=18.9
Q ss_pred hcccCCCEEEEecCcH---HHHHHHHHHHHhC
Q 008627 450 TKIRDGDVLLTYGSSS---AVEMILQHAHELG 478 (559)
Q Consensus 450 ~~I~dGdvILT~g~Ss---tV~~iL~~A~e~G 478 (559)
..+.++|+++.+++|+ -+..+++.|++.|
T Consensus 43 ~~~~~~dl~I~iS~SG~t~~~~~~~~~a~~~g 74 (120)
T cd05710 43 KRLTEKSVVILASHSGNTKETVAAAKFAKEKG 74 (120)
T ss_pred ccCCCCcEEEEEeCCCCChHHHHHHHHHHHcC
Confidence 3577788888888774 4445555565543
No 215
>PF02550 AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase N-terminal domain; InterPro: IPR003702 This family contains several enzymes which take part in pathways involving acetyl-CoA. Acetyl-CoA hydrolase 3.1.2.1 from EC from yeast catalyses the formation of acetate from acetyl-CoA, CoA transferase (CAT1) 2.8.3 from EC produces succinyl-CoA, and acetate-CoA transferase 2.8.3.8 from EC utilises acyl-CoA and acetate to form acetyl-CoA.; GO: 0003824 catalytic activity, 0006084 acetyl-CoA metabolic process; PDB: 2NVV_C 2G39_A 3D3U_A 3S8D_B 3QLI_B 3QLK_B 3GK7_B 3QDQ_A 3EH7_A 2OAS_A ....
Probab=32.82 E-value=1.7e+02 Score=28.63 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=55.7
Q ss_pred HHHHHhcccCCCEEEEec--CcH---HHHHHHH-HHHHhC-----CceEEEEcC---CC-----------------CCch
Q 008627 445 VKHAVTKIRDGDVLLTYG--SSS---AVEMILQ-HAHELG-----KQFRVVIVD---SR-----------------PKHE 493 (559)
Q Consensus 445 a~~Aa~~I~dGdvILT~g--~Ss---tV~~iL~-~A~e~G-----k~FrViVvE---SR-----------------P~~E 493 (559)
++.|+.+|++||+|.+-+ ..+ .+...|. ++.+.. ..+.++... .. +++-
T Consensus 12 a~eA~~~Ik~g~~I~~~~~~~~~~p~~l~~aL~~r~~e~~~~~~~~~~~l~~~~~l~~~P~~~~~~~~~~~~~~~~s~f~ 91 (198)
T PF02550_consen 12 AEEAASLIKSGDWIAFGGFTFAGEPKALPEALAQRAEELENVKVYSFISLFHGASLSADPEDPYLAPESAFHFRHNSFFV 91 (198)
T ss_dssp HHHHHTTS-TT-EEEE-SCTGGGS-HHHHHHHHHHHHGHCSEECTCSEEEEEECSSBTTHHHCCHSGCCTCCEEEEESS-
T ss_pred HHHHHHhCCCCCEEEeCCcccccCHHHHHHHHHHHHHHHhccccceeeccccceeecccccccccchhhhhhcccCcccC
Confidence 457788999999998877 333 3333333 443321 235555544 11 2233
Q ss_pred HHHHHHHHHhCC-CceEEEecchHHHHhcc----ccEEEEcceeeecCCceecccc
Q 008627 494 GKLLLRRLVRKG-LSCTYTHINAISYIIHE----VTRVFLGASSVLSNGTVCSRVG 544 (559)
Q Consensus 494 G~~LAk~L~~~G-I~vTyI~DsAvs~iM~~----VdkVlLGAdaIlaNGsVvNKvG 544 (559)
|. ..+.+.+.| ++.+-+..+.+...+.+ +|.+|+-+.-+-++|++.--+|
T Consensus 92 ~~-~~R~~~~~G~~~y~p~~ls~~p~~~~~~~~~~Dvaii~vSp~De~Gy~slG~s 146 (198)
T PF02550_consen 92 GP-NERKAINQGRVDYVPIHLSEIPRLFRRGFIPIDVAIIQVSPMDEHGYFSLGTS 146 (198)
T ss_dssp -H-HHHHHHHTTSSEES--BGGGHHHHHHTTSSH-SEEEEEECEE-TTSEEECTTB
T ss_pred CH-HHHHHHHCCCeEEECccHHHhHHHHHcCCCCCCEEEEEecCcCCCCCEeecHH
Confidence 33 346666666 34444457888876653 8999999999999998766555
No 216
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=32.82 E-value=1.7e+02 Score=26.53 Aligned_cols=6 Identities=50% Similarity=0.872 Sum_probs=2.2
Q ss_pred EEEEcC
Q 008627 482 RVVIVD 487 (559)
Q Consensus 482 rViVvE 487 (559)
+|+|+|
T Consensus 28 eiivvd 33 (182)
T cd06420 28 EVIIAD 33 (182)
T ss_pred EEEEEe
Confidence 333333
No 217
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=32.78 E-value=1.8e+02 Score=25.32 Aligned_cols=55 Identities=7% Similarity=0.073 Sum_probs=31.3
Q ss_pred EEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe--cchHHHHhccccEEEEccee
Q 008627 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--INAISYIIHEVTRVFLGASS 532 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~--DsAvs~iM~~VdkVlLGAda 532 (559)
.||+.|.|+..-..+... .+-+.|.+.||++.+.. .+.+...+.++|.||.+.+-
T Consensus 4 kILvvCgsG~~TS~m~~~---------------------ki~~~l~~~gi~~~v~~~~~~e~~~~~~~~D~iv~t~~~ 60 (94)
T PRK10310 4 KIIVACGGAVATSTMAAE---------------------EIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTARV 60 (94)
T ss_pred eEEEECCCchhHHHHHHH---------------------HHHHHHHHCCCeEEEEEecHHHHhhhcCCCCEEEECCcc
Confidence 478888877655544322 12234555677666554 22343344678888888653
No 218
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=32.71 E-value=1.2e+02 Score=34.80 Aligned_cols=79 Identities=22% Similarity=0.189 Sum_probs=52.8
Q ss_pred CceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe----c-chHHHHhc--cccEEEEcceeee-cCC----------cee
Q 008627 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH----I-NAISYIIH--EVTRVFLGASSVL-SNG----------TVC 540 (559)
Q Consensus 479 k~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~----D-sAvs~iM~--~VdkVlLGAdaIl-aNG----------sVv 540 (559)
...+|+|+-. -++=|..|++.|.+.|+++++.. | .++..++. +.|.||=-|--.. .+- .-+
T Consensus 379 ~~mkiLVtGa-~G~iG~~l~~~L~~~g~~v~~~~~~l~d~~~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~ 457 (668)
T PLN02260 379 PSLKFLIYGR-TGWIGGLLGKLCEKQGIAYEYGKGRLEDRSSLLADIRNVKPTHVFNAAGVTGRPNVDWCESHKVETIRA 457 (668)
T ss_pred CCceEEEECC-CchHHHHHHHHHHhCCCeEEeeccccccHHHHHHHHHhhCCCEEEECCcccCCCCCChHHhCHHHHHHH
Confidence 4457777754 36678899999988888885432 2 24444555 5788876663221 011 137
Q ss_pred cccchHHHHHHHhhCCCC
Q 008627 541 SRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 541 NKvGT~~IALaAk~~~VP 558 (559)
|-.||..++-+|+.++++
T Consensus 458 N~~gt~~l~~a~~~~g~~ 475 (668)
T PLN02260 458 NVVGTLTLADVCRENGLL 475 (668)
T ss_pred HhHHHHHHHHHHHHcCCe
Confidence 889999999999998875
No 219
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=32.61 E-value=2.1e+02 Score=30.47 Aligned_cols=99 Identities=21% Similarity=0.264 Sum_probs=52.8
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecch---------HHHHhc---
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA---------ISYIIH--- 521 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsA---------vs~iM~--- 521 (559)
+.++++|-|.+..+..++....+.|. .|++. .|.+.+...+ +...|+++.++.... +...+.
T Consensus 91 ~~~i~it~G~~~al~~~~~~~~~~gd--~vl~~--~p~y~~~~~~--~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 164 (391)
T PRK07309 91 ENEILVTIGATEALSASLTAILEPGD--KVLLP--APAYPGYEPI--VNLVGAEIVEIDTTENDFVLTPEMLEKAILEQG 164 (391)
T ss_pred CCcEEEeCChHHHHHHHHHHhcCCCC--EEEEe--CCCCcchHHH--HHHcCCEEEEEecCCcCCcCCHHHHHHHhhccC
Confidence 35688888888877666665544333 45554 3666665332 334688877775321 111222
Q ss_pred -cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 522 -~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
++..|++- .---+.|.+++..--..++-+|++|++++
T Consensus 165 ~~~~~i~l~-~P~NPtG~~~s~~~~~~l~~~~~~~~~~i 202 (391)
T PRK07309 165 DKLKAVILN-YPANPTGVTYSREQIKALADVLKKYDIFV 202 (391)
T ss_pred CCeEEEEEE-CCCCCCCcCcCHHHHHHHHHHHHHcCcEE
Confidence 23444441 11112255555444556777788888754
No 220
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=32.46 E-value=1.2e+02 Score=33.04 Aligned_cols=94 Identities=18% Similarity=0.166 Sum_probs=65.9
Q ss_pred CcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH----HHHHHHHh-C-CCceEEEecch--HHHHhccccEEEEcceeee
Q 008627 463 SSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK----LLLRRLVR-K-GLSCTYTHINA--ISYIIHEVTRVFLGASSVL 534 (559)
Q Consensus 463 ~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~----~LAk~L~~-~-GI~vTyI~DsA--vs~iM~~VdkVlLGAdaIl 534 (559)
+..+++.+|+.|-+.+..+-+-+.++.=.+-|. .+++.+++ . .++|.+-+|-+ .-.+++-++ .|-.+|+
T Consensus 27 n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~---~GftSVM 103 (347)
T PRK09196 27 NLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYPHIPVVMHQDHGNSPATCQRAIQ---LGFTSVM 103 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHH---cCCCEEE
Confidence 446778888888776655444444433233343 34555654 3 38999999976 444444444 5999999
Q ss_pred cCCcee-----------cccchHHHHHHHhhCCCCC
Q 008627 535 SNGTVC-----------SRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 535 aNGsVv-----------NKvGT~~IALaAk~~~VPV 559 (559)
-||+-. |-.=|..++-.||.+||.|
T Consensus 104 iDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~V 139 (347)
T PRK09196 104 MDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSV 139 (347)
T ss_pred ecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 999998 8899999999999999975
No 221
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=32.35 E-value=2.6e+02 Score=29.04 Aligned_cols=58 Identities=17% Similarity=0.048 Sum_probs=35.0
Q ss_pred ccCC-CEEEEecCcHHHHHHHHHHHHhCC-ceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec
Q 008627 452 IRDG-DVLLTYGSSSAVEMILQHAHELGK-QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI 513 (559)
Q Consensus 452 I~dG-dvILT~g~SstV~~iL~~A~e~Gk-~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D 513 (559)
+..+ .+|+|.|.+..+..++......|. .-.|++ + .|.+.+...+- ...|+++..+..
T Consensus 57 ~~~~~~Iiit~Gs~~ai~~~~~~~~~~g~~~d~Vl~-~-~p~y~~~~~~~--~~~g~~~~~v~~ 116 (350)
T TIGR03537 57 LDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIF-G-TPGYPVYERGA--LFAGGEPTAVKL 116 (350)
T ss_pred CCCCCcEEEcCChHHHHHHHHHHHcCCCCCCceEEE-c-CCCCcchHHHH--HhcCCEEEEccc
Confidence 4444 789999988887766655444332 124444 4 47776665433 347777776653
No 222
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=32.33 E-value=7e+02 Score=27.29 Aligned_cols=98 Identities=16% Similarity=0.217 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhC-CceEEEEc-CCCCCchHHHHHHHHHhCCCc
Q 008627 430 ERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELG-KQFRVVIV-DSRPKHEGKLLLRRLVRKGLS 507 (559)
Q Consensus 430 d~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~G-k~FrViVv-ESRP~~EG~~LAk~L~~~GI~ 507 (559)
+++|++....+.+.|.+ ..+.+ .|..++.++....+..++..+.+.| -..-+..+ -..+.+++....+++.+.|++
T Consensus 270 e~~i~~e~~~~~~~l~~-~~~~l-~Gk~~~i~~~~~~~~~~~~~l~elG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (426)
T cd01972 270 EAVIEREHERVAPEIEE-LRKAL-KGKKAIVETGAAYGHLLIAVLRELGFGEVPVVLVFHHDPTYDRGDSEKDLLEHGVD 347 (426)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHh-CCCEEEEEeCCccHHHHHHHHHHcCCceEEEEEeccCchhhhcchhHHHHhcCCcc
Confidence 33444433334444444 23344 5788888887777767777777777 44333322 234445544444556666663
Q ss_pred e--E---EEecc----hHHHHhc--cccEEEEc
Q 008627 508 C--T---YTHIN----AISYIIH--EVTRVFLG 529 (559)
Q Consensus 508 v--T---yI~Ds----Avs~iM~--~VdkVlLG 529 (559)
. . ++.|+ .+..+++ +.|.+|.+
T Consensus 348 ~~~~~~~~~~~~~~~~e~~~~l~~~~pDl~i~~ 380 (426)
T cd01972 348 PEIDITKYTVSNGQYYQFYNLLKRVKPDFIIFR 380 (426)
T ss_pred cccccceeeecCCCHHHHHHHHHHhCCCEEEEc
Confidence 2 2 55555 3445555 46776643
No 223
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=32.13 E-value=2.3e+02 Score=30.18 Aligned_cols=73 Identities=11% Similarity=0.167 Sum_probs=47.6
Q ss_pred CCCEEEEecCc----HHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc---hHHHHhc--ccc
Q 008627 454 DGDVLLTYGSS----SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---AISYIIH--EVT 524 (559)
Q Consensus 454 dGdvILT~g~S----stV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds---Avs~iM~--~Vd 524 (559)
.|..|-.|+-| ..+..+++...+++..++|+|+=+. ..|.++++.+...++.+.|.+.. .+..+++ +-|
T Consensus 49 ~~~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t--~~~~~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd 126 (425)
T PRK05749 49 KGPLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMT--PTGSERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPK 126 (425)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCC--ccHHHHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCC
Confidence 46789999999 3455566666666667777766543 34677776665567888888732 4445555 467
Q ss_pred EEEE
Q 008627 525 RVFL 528 (559)
Q Consensus 525 kVlL 528 (559)
.|++
T Consensus 127 ~v~~ 130 (425)
T PRK05749 127 LVII 130 (425)
T ss_pred EEEE
Confidence 7654
No 224
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=31.96 E-value=2.1e+02 Score=30.62 Aligned_cols=58 Identities=19% Similarity=0.151 Sum_probs=31.7
Q ss_pred EEEecC-cHHHHHHHHHHHHhCCceEEEEcCCCCCchH--HHHHHHHHhCCCceEEEecch
Q 008627 458 LLTYGS-SSAVEMILQHAHELGKQFRVVIVDSRPKHEG--KLLLRRLVRKGLSCTYTHINA 515 (559)
Q Consensus 458 ILT~g~-SstV~~iL~~A~e~Gk~FrViVvESRP~~EG--~~LAk~L~~~GI~vTyI~DsA 515 (559)
|.|++. ...++..+..|++.|....+.+.++...... .++++.+.+.|.+|.||+|++
T Consensus 106 i~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~ 166 (333)
T TIGR03217 106 VATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSA 166 (333)
T ss_pred EEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCC
Confidence 445443 2355566666666665555555555332222 234566666677777777654
No 225
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=31.93 E-value=5.3e+02 Score=26.29 Aligned_cols=98 Identities=15% Similarity=0.152 Sum_probs=50.5
Q ss_pred CCEEEEecCcHHHHHHHHHHHHh------------CCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------c
Q 008627 455 GDVLLTYGSSSAVEMILQHAHEL------------GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------N 514 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~------------Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D--------s 514 (559)
...|.|.|-+.....+|..+... +....|++.+ +.+.....+ +...|+.+.++.. .
T Consensus 58 ~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~h~~~~~~--~~~~g~~~~~v~~~~~~~~d~~ 133 (345)
T cd06450 58 ADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSD--QAHVSVEKA--AAYLDVKVRLVPVDEDGRMDPE 133 (345)
T ss_pred CCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcC--cchhHHHHH--HHHHhcCeEEeeeCCCCCcCHH
Confidence 46788888776665555544321 1223333333 333333222 2223777777752 1
Q ss_pred hHHHHhcc------ccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 515 AISYIIHE------VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 515 Avs~iM~~------VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.+-..+.+ -.++++....-...|.+.. -..|+-+|+.+|+++
T Consensus 134 ~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~l 181 (345)
T cd06450 134 ALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP---LEEIADLAEKYDLWL 181 (345)
T ss_pred HHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC---HHHHHHHHHHhCCeE
Confidence 23333433 3445555554455565422 356778889998864
No 226
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=31.87 E-value=1.4e+02 Score=24.81 Aligned_cols=35 Identities=11% Similarity=0.190 Sum_probs=19.8
Q ss_pred HHHHhCCCceEEEecc--hHHHHhccccEEEEcceee
Q 008627 499 RRLVRKGLSCTYTHIN--AISYIIHEVTRVFLGASSV 533 (559)
Q Consensus 499 k~L~~~GI~vTyI~Ds--Avs~iM~~VdkVlLGAdaI 533 (559)
+.|.+.||+++...-. .......++|.||++.+--
T Consensus 22 ~~~~~~gi~~~~~~~~~~~~~~~~~~~D~il~~~~i~ 58 (90)
T PF02302_consen 22 KALKELGIEVEVSAGSILEVEEIADDADLILLTPQIA 58 (90)
T ss_dssp HHHHHTTECEEEEEEETTTHHHHHTT-SEEEEEESSG
T ss_pred HHHHhccCceEEEEecccccccccCCCcEEEEcCccc
Confidence 3444566665555443 4455556688888777544
No 227
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=31.83 E-value=3.6e+02 Score=29.10 Aligned_cols=95 Identities=12% Similarity=0.091 Sum_probs=43.6
Q ss_pred EEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH-HH-HHHHHhCCCceEEEecchHHHHhc----cccEEEEcc
Q 008627 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LL-LRRLVRKGLSCTYTHINAISYIIH----EVTRVFLGA 530 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~-~L-Ak~L~~~GI~vTyI~DsAvs~iM~----~VdkVlLGA 530 (559)
.|+|-+-+..+..+|......|. +|++.+ |.+.+. .+ ...+...|+.+.++....+..+.. +...|++-
T Consensus 77 av~~~sG~~Ai~~~l~al~~~Gd--~Vi~~~--~~y~~t~~~~~~~~~~~G~~~~~vd~~d~e~l~~~i~~~tklV~le- 151 (391)
T TIGR01328 77 AVATSSGMGAIAATLLTILKAGD--HLISDE--CLYGCTFALLEHALTKFGIQVDFINMAIPEEVKAHIKDNTKIVYFE- 151 (391)
T ss_pred EEEECCHHHHHHHHHHHHhCCCC--EEEEec--CcchHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhhccCCeEEEEE-
Confidence 44444444444444443333333 455532 444433 22 333556788887776543333322 23333321
Q ss_pred eeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 531 daIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.-.-..|.++. -..|+-+|+++|++|
T Consensus 152 ~p~Np~G~v~d---l~~I~~la~~~gi~l 177 (391)
T TIGR01328 152 TPANPTMKLID---MERVCRDAHSQGVKV 177 (391)
T ss_pred CCCCCCCcccC---HHHHHHHHHHcCCEE
Confidence 11122344433 234666778888764
No 228
>PRK09135 pteridine reductase; Provisional
Probab=31.70 E-value=1e+02 Score=29.58 Aligned_cols=76 Identities=20% Similarity=0.202 Sum_probs=42.8
Q ss_pred CCCEEEEecCcHHHHHHHH-HHHHhCCceEEEEcCCCCCchHHHHHHHHHhC-CCceEEE-e----cchHHHHhc-----
Q 008627 454 DGDVLLTYGSSSAVEMILQ-HAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK-GLSCTYT-H----INAISYIIH----- 521 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~-~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~-GI~vTyI-~----DsAvs~iM~----- 521 (559)
.+.+||..|.++-+-..|. ...++ ..+|+++..+.......+...|... +-.+.++ . ...+..++.
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAA--GYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAA 82 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3567888888876654444 34443 4688888766544455566666543 1122222 2 234444444
Q ss_pred --cccEEEEcce
Q 008627 522 --EVTRVFLGAS 531 (559)
Q Consensus 522 --~VdkVlLGAd 531 (559)
.+|.||-.|-
T Consensus 83 ~~~~d~vi~~ag 94 (249)
T PRK09135 83 FGRLDALVNNAS 94 (249)
T ss_pred cCCCCEEEECCC
Confidence 4687777664
No 229
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=31.44 E-value=3.3e+02 Score=24.62 Aligned_cols=77 Identities=18% Similarity=0.200 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Q 008627 353 AMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERF 432 (559)
Q Consensus 353 A~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAIrrlk~~I~~l~~~~s~~eaK~~L~e~Id~f 432 (559)
.....+.++|.+...-+ ..++.+.....+..+....|+--+.-|++.++-.-+... ++ .+-|+.+.+.|++|
T Consensus 10 ~~y~~lg~~va~~~~~~----~~~~~~~Y~~~l~~al~~~~~~~~~~Nvl~Hi~Gyfk~~---ls-~~EK~~~~~~i~~y 81 (117)
T PF08349_consen 10 KIYRELGRLVANAGKRP----LEEVFEEYEELLMEALSKPPTRGSHINVLQHIFGYFKKK---LS-SEEKQHFLDLIEDY 81 (117)
T ss_pred HHHHHHHHHHhcCCCCC----hHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHh---CC-HHHHHHHHHHHHHH
Confidence 34566778887755432 244555555555666777889889999999888877653 22 34477788888888
Q ss_pred HHHHH
Q 008627 433 INEKI 437 (559)
Q Consensus 433 I~ErI 437 (559)
-+.++
T Consensus 82 r~g~i 86 (117)
T PF08349_consen 82 REGKI 86 (117)
T ss_pred HcCCc
Confidence 76653
No 230
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=31.40 E-value=71 Score=32.93 Aligned_cols=58 Identities=12% Similarity=0.074 Sum_probs=39.3
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI 513 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D 513 (559)
+..|++|.+.+....-..+=..|+..|.++.|++-+.-|. . ....+...|-+|+++..
T Consensus 54 ~~~g~~vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~--~--k~~~~~~~GA~v~~~~~ 111 (298)
T TIGR01139 54 LKPGKTIVEPTSGNTGIALAMVAAARGYKLILTMPETMSI--E--RRKLLKAYGAELVLTPG 111 (298)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHHcCCeEEEEeCCccCH--H--HHHHHHHcCCEEEEECC
Confidence 4566778777766666555556666788888888877552 2 25556677888887754
No 231
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=31.40 E-value=1.6e+02 Score=28.50 Aligned_cols=45 Identities=13% Similarity=0.316 Sum_probs=18.2
Q ss_pred EEEecCcHHHHHHHHHHHHhC---CceEEEEcCCCCCchHHHHHHHHH
Q 008627 458 LLTYGSSSAVEMILQHAHELG---KQFRVVIVDSRPKHEGKLLLRRLV 502 (559)
Q Consensus 458 ILT~g~SstV~~iL~~A~e~G---k~FrViVvESRP~~EG~~LAk~L~ 502 (559)
|.||.....+...|....++. ..++|||+|......-..+++++.
T Consensus 35 ip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~ 82 (251)
T cd06439 35 IPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYA 82 (251)
T ss_pred EecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHh
Confidence 333444444444444433321 114455544333333334444443
No 232
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=31.31 E-value=5.1e+02 Score=25.32 Aligned_cols=43 Identities=7% Similarity=-0.183 Sum_probs=31.5
Q ss_pred CCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEc
Q 008627 487 DSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (559)
Q Consensus 487 ESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLG 529 (559)
-|.-..+-..+++.+.+.|+++..|+-+.-+.+-+.+|.+|.=
T Consensus 120 ~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~~ 162 (192)
T PRK00414 120 TSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEIRV 162 (192)
T ss_pred CCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEe
Confidence 3333344556688888999999999977767777778988853
No 233
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=31.20 E-value=3e+02 Score=29.80 Aligned_cols=90 Identities=17% Similarity=0.196 Sum_probs=52.9
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhcc-ccEEEEcceee
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE-VTRVFLGASSV 533 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~-VdkVlLGAdaI 533 (559)
|.+|+..|..+.=..+.+..++.| .+|++.|..+.. ....+.+|.+.|+.+.+-.+.. .++.+ +|.|+..+- |
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G--~~V~~~d~~~~~-~~~~~~~l~~~g~~~~~~~~~~--~~~~~~~d~vV~s~g-i 78 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLG--ANVTVNDGKPFS-ENPEAQELLEEGIKVICGSHPL--ELLDEDFDLMVKNPG-I 78 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCC--CEEEEEcCCCcc-chhHHHHHHhcCCEEEeCCCCH--HHhcCcCCEEEECCC-C
Confidence 567888888764444544455545 589998866532 2234567888888765432221 22333 677766552 2
Q ss_pred ecCCceecccchHHHHHHHhhCCCCC
Q 008627 534 LSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 534 laNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
-. +..+...|++.|+||
T Consensus 79 ~~---------~~~~~~~a~~~~i~v 95 (447)
T PRK02472 79 PY---------TNPMVEKALEKGIPI 95 (447)
T ss_pred CC---------CCHHHHHHHHCCCcE
Confidence 21 234566777788875
No 234
>PRK07589 ornithine cyclodeaminase; Validated
Probab=31.17 E-value=3.9e+02 Score=28.95 Aligned_cols=100 Identities=14% Similarity=0.134 Sum_probs=60.0
Q ss_pred HHHHHhccc--CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhcc
Q 008627 445 VKHAVTKIR--DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE 522 (559)
Q Consensus 445 a~~Aa~~I~--dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~ 522 (559)
+..+.+++. |-.+++.+|.......-++....-..--+|+|. +|-...-..+++++.+.|+++....+ +-..+.+
T Consensus 117 sala~~~Lar~da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~-~r~~~~a~~~~~~~~~~~~~v~~~~~--~~~av~~ 193 (346)
T PRK07589 117 SALAAKYLARPDSRTMALIGNGAQSEFQALAFKALLGIEEIRLY-DIDPAATAKLARNLAGPGLRIVACRS--VAEAVEG 193 (346)
T ss_pred HHHHHHHhccCCCcEEEEECCcHHHHHHHHHHHHhCCceEEEEE-eCCHHHHHHHHHHHHhcCCcEEEeCC--HHHHHhc
Confidence 334455553 346777788776554444333322223356665 33333345678888888888876543 5666788
Q ss_pred ccEEEEcc---e-------eeecCCceecccchHH
Q 008627 523 VTRVFLGA---S-------SVLSNGTVCSRVGTAC 547 (559)
Q Consensus 523 VdkVlLGA---d-------aIlaNGsVvNKvGT~~ 547 (559)
+|.|+.-. + .++..|..++-+|++.
T Consensus 194 ADIIvtaT~S~~~~Pvl~~~~lkpG~hV~aIGs~~ 228 (346)
T PRK07589 194 ADIITTVTADKTNATILTDDMVEPGMHINAVGGDC 228 (346)
T ss_pred CCEEEEecCCCCCCceecHHHcCCCcEEEecCCCC
Confidence 99888744 1 2456788888888754
No 235
>PRK05957 aspartate aminotransferase; Provisional
Probab=31.17 E-value=3.2e+02 Score=28.97 Aligned_cols=92 Identities=14% Similarity=0.145 Sum_probs=49.7
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc--------hHHHHhc-ccc
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH-EVT 524 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds--------Avs~iM~-~Vd 524 (559)
..++++|.|.+..+..++....+.|. +|++. .|.+.+...+ +...|+.+.++... .+-..+. ++.
T Consensus 89 ~~~i~~t~G~~~~l~~~~~~~~~~gd--~Vlv~--~P~y~~~~~~--~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~k 162 (389)
T PRK05957 89 EQAIVVTAGSNMAFMNAILAITDPGD--EIILN--TPYYFNHEMA--ITMAGCQPILVPTDDNYQLQPEAIEQAITPKTR 162 (389)
T ss_pred CCeEEEeCChHHHHHHHHHHhcCCCC--EEEEe--CCCCcCHHHH--HHhcCCEEEEeecCCCCCcCHHHHHHhcCcCce
Confidence 34577788877766555554444443 45553 4776555332 34578888777532 1222222 333
Q ss_pred EEEEcceeeecCCceecccch-------HHHHHHHhhCCCCC
Q 008627 525 RVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPV 559 (559)
Q Consensus 525 kVlLGAdaIlaNGsVvNKvGT-------~~IALaAk~~~VPV 559 (559)
.|++- | .-|..|+ ..|+-+|+++|+.+
T Consensus 163 lv~~~------~--p~NPtG~~~~~~~~~~i~~~a~~~~~~l 196 (389)
T PRK05957 163 AIVTI------S--PNNPTGVVYPEALLRAVNQICAEHGIYH 196 (389)
T ss_pred EEEEe------C--CCCCCCcCcCHHHHHHHHHHHHHcCcEE
Confidence 33322 2 3456664 44677788888753
No 236
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=31.11 E-value=1.2e+02 Score=31.24 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhCCCceEEEecch-HHHH---hccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 493 EGKLLLRRLVRKGLSCTYTHINA-ISYI---IHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 493 EG~~LAk~L~~~GI~vTyI~DsA-vs~i---M~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.|+.+++.|.+.|+++.++.... .... +.+.|.||.-+|..+. .-|. +.-++..+|+|+
T Consensus 20 s~~~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~g------e~~~--~~~~le~~gip~ 82 (299)
T PRK14571 20 SGERVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTFG------EDGT--LQAILDFLGIRY 82 (299)
T ss_pred HHHHHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEeCCCCCC------CccH--HHHHHHHcCCCc
Confidence 46677777777777777664321 1111 2468999988875531 2222 445566677774
No 237
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=31.06 E-value=1.6e+02 Score=25.76 Aligned_cols=34 Identities=15% Similarity=0.350 Sum_probs=18.9
Q ss_pred HHHHhCCCceEEEecc--hHHHHhccccEEEEccee
Q 008627 499 RRLVRKGLSCTYTHIN--AISYIIHEVTRVFLGASS 532 (559)
Q Consensus 499 k~L~~~GI~vTyI~Ds--Avs~iM~~VdkVlLGAda 532 (559)
+.|.+.|+++++..-+ .+.-.+.++|.||++-+.
T Consensus 21 ~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv 56 (96)
T cd05564 21 KAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQV 56 (96)
T ss_pred HHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhH
Confidence 4455566665555433 333356677777776543
No 238
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=30.95 E-value=1.3e+02 Score=32.81 Aligned_cols=94 Identities=13% Similarity=0.106 Sum_probs=65.4
Q ss_pred CcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHH----HHHHHHh-C-CCceEEEecch--HHHHhccccEEEEcceeee
Q 008627 463 SSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL----LLRRLVR-K-GLSCTYTHINA--ISYIIHEVTRVFLGASSVL 534 (559)
Q Consensus 463 ~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~----LAk~L~~-~-GI~vTyI~DsA--vs~iM~~VdkVlLGAdaIl 534 (559)
+-.++..+|..|-+.+..+-+-+.++.=.+-|.. |++.+++ . +|+|.+-+|-+ .-.+++-++ .|-.+|+
T Consensus 27 n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLHLDHg~~~e~i~~Ai~---~GFtSVM 103 (347)
T PRK13399 27 NMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLHQDHGNSPATCQSAIR---SGFTSVM 103 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHh---cCCCEEE
Confidence 3467777888777666554444444333344443 4555554 3 48999999976 445555455 5899999
Q ss_pred cCCcee-----------cccchHHHHHHHhhCCCCC
Q 008627 535 SNGTVC-----------SRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 535 aNGsVv-----------NKvGT~~IALaAk~~~VPV 559 (559)
-||+-+ |-.=|..++-.||.+||.|
T Consensus 104 iDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsV 139 (347)
T PRK13399 104 MDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSV 139 (347)
T ss_pred EeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeE
Confidence 999988 7788999999999999976
No 239
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.90 E-value=2.3e+02 Score=29.02 Aligned_cols=75 Identities=16% Similarity=0.168 Sum_probs=44.0
Q ss_pred CCCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhc------
Q 008627 454 DGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH------ 521 (559)
Q Consensus 454 dGdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~------ 521 (559)
+|.++|..|-++-+- .+.+...++| .+|++++.+.......++.+|...|-.+.++. | .++..++.
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~G--a~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~g 88 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLG--ATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGLG 88 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--CEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 456777777776554 4444444555 47888876544445567778877776665543 2 23344443
Q ss_pred cccEEEEcc
Q 008627 522 EVTRVFLGA 530 (559)
Q Consensus 522 ~VdkVlLGA 530 (559)
++|.||--|
T Consensus 89 ~iD~li~nA 97 (306)
T PRK07792 89 GLDIVVNNA 97 (306)
T ss_pred CCCEEEECC
Confidence 467666554
No 240
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=30.73 E-value=2.1e+02 Score=25.77 Aligned_cols=71 Identities=23% Similarity=0.378 Sum_probs=40.7
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEc
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLG 529 (559)
++.+|+..|....-..+.....+.| ..+|++++..+. ....+++++...++.+.+... ..++.++|.||+.
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Dvvi~~ 88 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLE-KAKALAERFGELGIAIAYLDL---EELLAEADLIINT 88 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHH-HHHHHHHHHhhcccceeecch---hhccccCCEEEeC
Confidence 4577888888655455555544444 357888865433 345566666544333333222 2236778888875
No 241
>PRK07681 aspartate aminotransferase; Provisional
Probab=30.71 E-value=3.1e+02 Score=29.20 Aligned_cols=100 Identities=14% Similarity=0.075 Sum_probs=53.0
Q ss_pred ccC-CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc---h----HHHHh---
Q 008627 452 IRD-GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---A----ISYII--- 520 (559)
Q Consensus 452 I~d-GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds---A----vs~iM--- 520 (559)
+.. .++|+|.|.+..+..++....+.| -+|+|. .|.+.+.... +...|+.+..+... . +..+.
T Consensus 90 ~~~~~~I~it~G~~~al~~~~~~~~~~G--d~Vlv~--~P~y~~~~~~--~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~ 163 (399)
T PRK07681 90 LNADKEVLLLMGSQDGLVHLPMVYANPG--DIILVP--DPGYTAYETG--IQMAGATSYYMPLKKENDFLPDLELIPEEI 163 (399)
T ss_pred CCCCCeEEECCCcHHHHHHHHHHhCCCC--CEEEEC--CCCccchHHH--HHhcCCEEEEEecCCCCCCcCCHHHHHHhc
Confidence 443 567888888877765555443333 345554 3666655443 33568887777532 1 11121
Q ss_pred -ccccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 521 -HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 521 -~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
.++..|++- .-=-+.|.++++-=-..|+-+|++|++.
T Consensus 164 ~~~~k~v~l~-~P~NPTG~~~s~~~~~~i~~~a~~~~~~ 201 (399)
T PRK07681 164 ADKAKMMILN-FPGNPVPAMAHEDFFKEVIAFAKKHNII 201 (399)
T ss_pred cccceEEEEe-CCCCCcCcCCCHHHHHHHHHHHHHcCeE
Confidence 234444432 0011225555544456677778888865
No 242
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=30.69 E-value=1.4e+02 Score=29.66 Aligned_cols=98 Identities=13% Similarity=0.070 Sum_probs=50.8
Q ss_pred EEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHh-CCCceEEE---ecchHHHHhcc--ccEEEEcc
Q 008627 458 LLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYT---HINAISYIIHE--VTRVFLGA 530 (559)
Q Consensus 458 ILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~-~GI~vTyI---~DsAvs~iM~~--VdkVlLGA 530 (559)
||..|-++.+- .++++..+.|..++|++++..........+..+.. .++.+... ....+..++.. +|.||--|
T Consensus 2 ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a 81 (317)
T TIGR01181 2 ILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVHFA 81 (317)
T ss_pred EEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEEcc
Confidence 66677776664 44444555555578888764322111222222321 23333221 12355566665 88888776
Q ss_pred eeeecCCc--------eecccchHHHHHHHhhC
Q 008627 531 SSVLSNGT--------VCSRVGTACVAMVAYGF 555 (559)
Q Consensus 531 daIlaNGs--------VvNKvGT~~IALaAk~~ 555 (559)
-.+..+-. -+|-.|+..++-+|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~ 114 (317)
T TIGR01181 82 AESHVDRSISGPAAFIETNVVGTYTLLEAVRKY 114 (317)
T ss_pred cccCchhhhhCHHHHHHHHHHHHHHHHHHHHhc
Confidence 43321111 24667788887777664
No 243
>PRK12320 hypothetical protein; Provisional
Probab=30.62 E-value=1.1e+02 Score=36.11 Aligned_cols=90 Identities=18% Similarity=0.096 Sum_probs=54.0
Q ss_pred EEEEecCcHHHHH-HHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe----cchHHHHhccccEEEEcce
Q 008627 457 VLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH----INAISYIIHEVTRVFLGAS 531 (559)
Q Consensus 457 vILT~g~SstV~~-iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~----DsAvs~iM~~VdkVlLGAd 531 (559)
+||+.|-++-+-. ++..+.++| .+|++++..+.. +...+ ++++. |..+..++.++|.||-=|.
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G--~~Vi~ldr~~~~--------~~~~~--ve~v~~Dl~d~~l~~al~~~D~VIHLAa 69 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAG--HTVSGIAQHPHD--------ALDPR--VDYVCASLRNPVLQELAGEADAVIHLAP 69 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCC--CEEEEEeCChhh--------cccCC--ceEEEccCCCHHHHHHhcCCCEEEEcCc
Confidence 5888888877754 444455544 578888754321 11112 33332 3344455667888877664
Q ss_pred eeecCCceecccchHHHHHHHhhCCCC
Q 008627 532 SVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 532 aIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
....+..-.|-.||..+.-+|+.+++.
T Consensus 70 ~~~~~~~~vNv~Gt~nLleAA~~~GvR 96 (699)
T PRK12320 70 VDTSAPGGVGITGLAHVANAAARAGAR 96 (699)
T ss_pred cCccchhhHHHHHHHHHHHHHHHcCCe
Confidence 322222236888999999999888764
No 244
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=30.46 E-value=2.9e+02 Score=30.01 Aligned_cols=96 Identities=18% Similarity=0.133 Sum_probs=45.1
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH-HHHH-HHHhCCCceEEEecc---hHHHHhc-cccEEEEc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLR-RLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~-~LAk-~L~~~GI~vTyI~Ds---Avs~iM~-~VdkVlLG 529 (559)
+.|++-+....+..+|......|. +|++.+ |.+.|. .+.+ .+...|+++.++... .+...+. +...|++-
T Consensus 81 ~~i~~ssG~~Ai~~~l~all~~GD--~Vi~~~--~~y~~~~~~~~~~~~~~Gi~v~~vd~~d~e~l~~~i~~~tklV~ie 156 (398)
T PRK08249 81 AATAFSTGMAAISNTLYTFLKPGD--RVVSIK--DTYGGTNKIFTEFLPRMGVDVTLCETGDHEQIEAEIAKGCDLLYLE 156 (398)
T ss_pred eEEEeCChHHHHHHHHHHhcCCCC--EEEEcC--CchHHHHHHHHHHHhhCCeEEEEcCCCCHHHHHHhcCCCCeEEEEE
Confidence 344444444444444443333343 444432 455543 2332 355678887766532 3333333 34444442
Q ss_pred ceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
. ---..|.++. -..|+-+|++++++|
T Consensus 157 ~-p~NPtg~v~d---l~~I~~la~~~gi~l 182 (398)
T PRK08249 157 T-PTNPTLKIVD---IERLAAAAKKVGALV 182 (398)
T ss_pred C-CCCCCCccCC---HHHHHHHHHHcCCEE
Confidence 1 1122333332 234777788888764
No 245
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=30.43 E-value=2.3e+02 Score=27.02 Aligned_cols=15 Identities=33% Similarity=0.645 Sum_probs=8.1
Q ss_pred CCceEEEEcCCCCCc
Q 008627 478 GKQFRVVIVDSRPKH 492 (559)
Q Consensus 478 Gk~FrViVvESRP~~ 492 (559)
+.+++++..+..+++
T Consensus 55 ~~~i~~i~~~~~~G~ 69 (236)
T cd06435 55 GERFRFFHVEPLPGA 69 (236)
T ss_pred CCcEEEEEcCCCCCC
Confidence 445666655544543
No 246
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=30.41 E-value=2.3e+02 Score=28.34 Aligned_cols=99 Identities=16% Similarity=0.168 Sum_probs=49.0
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHH----------Hh-cc
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY----------II-HE 522 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~----------iM-~~ 522 (559)
...+++|.|-+..+..++..+...| -+|++. .|.+-+. ...+...|+.+.++....-.. .. ++
T Consensus 59 ~~~~~~~~~~t~a~~~~~~~~~~~g--~~vl~~--~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 132 (350)
T cd00609 59 PEEIVVTNGAQEALSLLLRALLNPG--DEVLVP--DPTYPGY--EAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPK 132 (350)
T ss_pred cceEEEecCcHHHHHHHHHHhCCCC--CEEEEc--CCCchhH--HHHHHHCCCEEEEEecccccCCccCHHHHHhhcCcc
Confidence 4457777777777666666554333 345553 3444433 333444567766665432221 11 14
Q ss_pred ccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 523 VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+..|++-. .-...|.++.----..|.-+|+.+|++|
T Consensus 133 ~~~v~i~~-~~~~tG~~~~~~~l~~l~~~~~~~~~~~ 168 (350)
T cd00609 133 TKLLYLNN-PNNPTGAVLSEEELEELAELAKKHGILI 168 (350)
T ss_pred ceEEEEEC-CCCCCCcccCHHHHHHHHHHHHhCCeEE
Confidence 55555433 3334454443222233445678888764
No 247
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=30.31 E-value=3.5e+02 Score=28.82 Aligned_cols=13 Identities=46% Similarity=0.508 Sum_probs=9.0
Q ss_pred HHHHHHhhCCCCC
Q 008627 547 CVAMVAYGFHIPV 559 (559)
Q Consensus 547 ~IALaAk~~~VPV 559 (559)
.|+-+|++||++|
T Consensus 179 ~I~~la~~~g~~l 191 (387)
T PRK09331 179 KVAKVAHEYGIPF 191 (387)
T ss_pred HHHHHHHHcCCEE
Confidence 4667778877764
No 248
>PRK07550 hypothetical protein; Provisional
Probab=30.31 E-value=2.9e+02 Score=29.15 Aligned_cols=101 Identities=18% Similarity=0.116 Sum_probs=49.5
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc---h-------HHHHhc
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---A-------ISYIIH 521 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds---A-------vs~iM~ 521 (559)
+...++++|.|.+..+..++....+.|. +| ++++ |.+-+... .+...|+++..+... . +-..+.
T Consensus 88 ~~~~~i~~t~G~~~al~~~~~~l~~~gd--~V-lv~~-p~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~ 161 (386)
T PRK07550 88 ISPEQVHITSGCNQAFWAAMVTLAGAGD--EV-ILPL-PWYFNHKM--WLDMLGIRPVYLPCDEGPGLLPDPAAAEALIT 161 (386)
T ss_pred CCcceEEEecCcHHHHHHHHHHhcCCCC--EE-EEcC-CCCcchHH--HHHhcCCEEEEEecCCCcCCCCCHHHHHHHhc
Confidence 4455778887776665544444333333 34 4443 66644432 334577777666531 1 112222
Q ss_pred -cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 522 -~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+...|++= .-=-..|.+++.-=-..|+-+|++||+++
T Consensus 162 ~~~~~v~~~-~P~NPtG~~~~~~~~~~i~~~~~~~~~~i 199 (386)
T PRK07550 162 PRTRAIALV-TPNNPTGVVYPPELLHELYDLARRHGIAL 199 (386)
T ss_pred ccCcEEEEe-CCCCCCCcccCHHHHHHHHHHHHHcCeEE
Confidence 23343321 00012255554333455777788888754
No 249
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=30.29 E-value=1.4e+02 Score=34.38 Aligned_cols=77 Identities=17% Similarity=0.192 Sum_probs=48.6
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH----------------HHHHHHHhCCCceEEEe----c
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK----------------LLLRRLVRKGLSCTYTH----I 513 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~----------------~LAk~L~~~GI~vTyI~----D 513 (559)
.|..|+.+|....=+.+...+.+.| ++|+|.|..+...|. .....|.+.||++.+-. |
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G--~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~ 386 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAG--VQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRD 386 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcC--CcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCc
Confidence 5889999998866555555555545 468888877754321 12455677888765432 2
Q ss_pred chHHHHhccccEEEEccee
Q 008627 514 NAISYIIHEVTRVFLGASS 532 (559)
Q Consensus 514 sAvs~iM~~VdkVlLGAda 532 (559)
-.+..+..+.|+||++.-+
T Consensus 387 ~~~~~l~~~~DaV~latGa 405 (639)
T PRK12809 387 ITFSDLTSEYDAVFIGVGT 405 (639)
T ss_pred CCHHHHHhcCCEEEEeCCC
Confidence 2344455678999986544
No 250
>PRK06091 membrane protein FdrA; Validated
Probab=30.29 E-value=3.2e+02 Score=31.73 Aligned_cols=133 Identities=14% Similarity=0.088 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--H-----HHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCC
Q 008627 419 SEAKATLHSDIERFINEKIIL--A-----DRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK 491 (559)
Q Consensus 419 ~eaK~~L~e~Id~fI~ErI~~--A-----~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~ 491 (559)
+++.+.+.+.+++|+...-.. . .-.-...+.+.+.+.|..+..--...|...+..|.+.|+ .-+++.+.-+.
T Consensus 75 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~t~~~a~~~lpe~DLAvIsVPa~~v~~al~ea~~~G~-~viI~S~gfg~ 153 (555)
T PRK06091 75 AGIAQAIMQQLEEALKQLAQGSGSSQSLTQVRRWDSACQKLPDANLALISVAGEYAAELAEQALDRNL-NVMMFSDNVTL 153 (555)
T ss_pred hHHHHHHHHHHHHHhhccccccCCcCCCcccccHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHcCC-eEEEEcCCCCH
Confidence 456666677777776542100 0 011233456667666888888888888899999999884 33444443321
Q ss_pred chHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceeeecCC--ceecccchHHHHHH--HhhCCC
Q 008627 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNG--TVCSRVGTACVAMV--AYGFHI 557 (559)
Q Consensus 492 ~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIlaNG--sVvNKvGT~~IALa--Ak~~~V 557 (559)
..-.+|.+...+.|+.+ +-+++.... +..+...|. .++.-| ++++..||...+++ +...++
T Consensus 154 ~~E~~L~e~Ar~~Glrv-mGPNCG~~~-i~gl~lsF~---~~~~~G~IgiVSQSGtl~~~v~~~a~~~Gi 218 (555)
T PRK06091 154 EDEIRLKTRAREKGLLV-MGPDCGTAM-IAGTPLAFA---NVMPEGNIGVIGASGTGIQELCSQIALAGE 218 (555)
T ss_pred HHHHHHHHHHHHcCCEE-ECCCChhhh-hcCCccccc---CCCCCCCEEEEeCcHHHHHHHHHHHHHcCC
Confidence 11223333333455421 223332222 233333331 123456 37999998877765 555554
No 251
>PRK12743 oxidoreductase; Provisional
Probab=30.23 E-value=1.7e+02 Score=28.61 Aligned_cols=75 Identities=12% Similarity=0.102 Sum_probs=47.2
Q ss_pred CCEEEEecCcHHH-HHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhc-------
Q 008627 455 GDVLLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH------- 521 (559)
Q Consensus 455 GdvILT~g~SstV-~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~------- 521 (559)
+.+||+.|.|+-| ..+.+...++| .+|+++..++.....++..+|...|-.+.++. | ..+..++.
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQG--FDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLG 79 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3467777777665 45555555544 68888877777777778888887776666543 2 22323332
Q ss_pred cccEEEEcce
Q 008627 522 EVTRVFLGAS 531 (559)
Q Consensus 522 ~VdkVlLGAd 531 (559)
.+|.||..|-
T Consensus 80 ~id~li~~ag 89 (256)
T PRK12743 80 RIDVLVNNAG 89 (256)
T ss_pred CCCEEEECCC
Confidence 4777776653
No 252
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=30.20 E-value=4.5e+02 Score=27.53 Aligned_cols=106 Identities=13% Similarity=0.148 Sum_probs=61.8
Q ss_pred HHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCC------Cc--------hHH----HHHHHHHhC
Q 008627 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP------KH--------EGK----LLLRRLVRK 504 (559)
Q Consensus 443 ~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP------~~--------EG~----~LAk~L~~~ 504 (559)
.+.+.+.++|.+ ..|+.+|..++=..+.+.....|.. +++++|-.. .. -|+ .|+++|.+.
T Consensus 19 L~G~e~~~kL~~-s~VlVvG~GGVGs~vae~Lar~GVg-~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~I 96 (268)
T PRK15116 19 LYGEKALQLFAD-AHICVVGIGGVGSWAAEALARTGIG-AITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQI 96 (268)
T ss_pred HhCHHHHHHhcC-CCEEEECcCHHHHHHHHHHHHcCCC-EEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhH
Confidence 366777778864 6789999987777777776666732 444444321 11 122 446677665
Q ss_pred CC--ceEEEec----chHHHHh-ccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 505 GL--SCTYTHI----NAISYII-HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 505 GI--~vTyI~D----sAvs~iM-~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+- .++.+.+ ..+..++ .+.|.||...|.+- .+ ..+.-.|+.+++||
T Consensus 97 NP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~------~k---~~L~~~c~~~~ip~ 149 (268)
T PRK15116 97 NPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVR------PK---AALIAYCRRNKIPL 149 (268)
T ss_pred CCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHH------HH---HHHHHHHHHcCCCE
Confidence 43 3443322 1233344 36888877766542 22 24566788889986
No 253
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=30.14 E-value=3.2e+02 Score=29.78 Aligned_cols=91 Identities=12% Similarity=0.189 Sum_probs=52.2
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHh--CCCceEEEecchHHHHhccccEEEEc
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR--KGLSCTYTHINAISYIIHEVTRVFLG 529 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~--~GI~vTyI~DsAvs~iM~~VdkVlLG 529 (559)
.+...+||.+|....=..+.+.+++.| ++|++.|.++.. .+..+|.+ .||.+.+-... . ..+.++|.|++.
T Consensus 3 ~~~~~~~~v~G~G~sG~s~a~~L~~~G--~~v~~~D~~~~~---~~~~~l~~~~~g~~~~~~~~~-~-~~~~~~d~vV~s 75 (448)
T PRK03803 3 MQSDGLHIVVGLGKTGLSVVRFLARQG--IPFAVMDSREQP---PGLDTLAREFPDVELRCGGFD-C-ELLVQASEIIIS 75 (448)
T ss_pred cccCCeEEEEeecHhHHHHHHHHHhCC--CeEEEEeCCCCc---hhHHHHHhhcCCcEEEeCCCC-h-HHhcCCCEEEEC
Confidence 344457777766544334444455545 689999987643 23345766 37766553211 1 234678888776
Q ss_pred ceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
. +|-.+ ...-..|++.++||
T Consensus 76 p-~i~~~---------~p~~~~a~~~~i~i 95 (448)
T PRK03803 76 P-GLALD---------TPALRAAAAMGIEV 95 (448)
T ss_pred C-CCCCC---------CHHHHHHHHCCCcE
Confidence 6 44332 24455667777774
No 254
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=30.09 E-value=1.1e+02 Score=32.50 Aligned_cols=72 Identities=14% Similarity=0.143 Sum_probs=47.5
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhc--cccEEEEcceee
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSV 533 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~--~VdkVlLGAdaI 533 (559)
.+||.+|.+.....++..|++. .++|++++..|..-|..++... +.+-+....++-.+.+ .+|.|+.+.+.+
T Consensus 13 ~~ilIiG~g~~~~~~~~a~~~~--G~~v~~~~~~~~~~~~~~ad~~----~~~~~~d~~~l~~~~~~~~id~vi~~~e~~ 86 (395)
T PRK09288 13 TRVMLLGSGELGKEVAIEAQRL--GVEVIAVDRYANAPAMQVAHRS----HVIDMLDGDALRAVIEREKPDYIVPEIEAI 86 (395)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCCCchHHhhhhe----EECCCCCHHHHHHHHHHhCCCEEEEeeCcC
Confidence 4899999987777777777664 5789999999987776654321 1111111234555555 688888887654
No 255
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=30.01 E-value=2.6e+02 Score=23.33 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=21.0
Q ss_pred EEEecCcHHHHHHHHHHHHhC-CceEEEEcCCCCCchHHHHHHHHH
Q 008627 458 LLTYGSSSAVEMILQHAHELG-KQFRVVIVDSRPKHEGKLLLRRLV 502 (559)
Q Consensus 458 ILT~g~SstV~~iL~~A~e~G-k~FrViVvESRP~~EG~~LAk~L~ 502 (559)
|++++.-..+...|....+++ ..++++|++.....+=.+...++.
T Consensus 3 i~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~ 48 (156)
T cd00761 3 IPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYA 48 (156)
T ss_pred EeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHH
Confidence 445555555555555554443 234555555444443333344443
No 256
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=29.97 E-value=1.2e+02 Score=35.04 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=46.9
Q ss_pred cCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH------------HH----HHHHHhCCCceEEE----e
Q 008627 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK------------LL----LRRLVRKGLSCTYT----H 512 (559)
Q Consensus 453 ~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~------------~L----Ak~L~~~GI~vTyI----~ 512 (559)
..|..|+.+|....=+.+...+.+.| ++|+|+|..+...|. .+ ...+.+.||++.+- .
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G--~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~ 402 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNG--VAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK 402 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC
Confidence 35789999998865555555555544 678889876653221 12 34456678765431 2
Q ss_pred cchHHHHhccccEEEEcce
Q 008627 513 INAISYIIHEVTRVFLGAS 531 (559)
Q Consensus 513 DsAvs~iM~~VdkVlLGAd 531 (559)
|-.+..+..+.|+||++.-
T Consensus 403 ~i~~~~~~~~~DavilAtG 421 (654)
T PRK12769 403 DISLESLLEDYDAVFVGVG 421 (654)
T ss_pred cCCHHHHHhcCCEEEEeCC
Confidence 3233444557899999653
No 257
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=29.95 E-value=1.4e+02 Score=31.32 Aligned_cols=68 Identities=15% Similarity=0.145 Sum_probs=38.4
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCC-ceEEEEcCC-CCCchHHHHHHHHHhCCCceEEEe---------cchHHHHhc--c
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGK-QFRVVIVDS-RPKHEGKLLLRRLVRKGLSCTYTH---------INAISYIIH--E 522 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk-~FrViVvES-RP~~EG~~LAk~L~~~GI~vTyI~---------DsAvs~iM~--~ 522 (559)
-.||..++.+..+. |..+.+.|. ..+|.++=| +|...+. ..+.||+|.++. +..+...|+ +
T Consensus 92 i~vl~Sg~g~nl~a-l~~~~~~~~~~~~i~~visn~~~~~~l-----A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~ 165 (286)
T PRK13011 92 VLIMVSKFDHCLND-LLYRWRIGELPMDIVGVVSNHPDLEPL-----AAWHGIPFHHFPITPDTKPQQEAQVLDVVEESG 165 (286)
T ss_pred EEEEEcCCcccHHH-HHHHHHcCCCCcEEEEEEECCccHHHH-----HHHhCCCEEEeCCCcCchhhhHHHHHHHHHHhC
Confidence 35666666555555 445555554 466665533 6653322 445799999873 122333444 5
Q ss_pred ccEEEEc
Q 008627 523 VTRVFLG 529 (559)
Q Consensus 523 VdkVlLG 529 (559)
+|.+++-
T Consensus 166 ~Dlivla 172 (286)
T PRK13011 166 AELVVLA 172 (286)
T ss_pred cCEEEEe
Confidence 8887764
No 258
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=29.92 E-value=3.1e+02 Score=29.12 Aligned_cols=98 Identities=16% Similarity=0.063 Sum_probs=51.4
Q ss_pred CEEEEecCcHHHHHHHHHHHHh-CCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc----------hH-HHHhccc
Q 008627 456 DVLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AI-SYIIHEV 523 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~-Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds----------Av-s~iM~~V 523 (559)
.+|+|.|.+..+..++....+. |..-.|+|. .|.+.+...+- ...|+++..++.. ++ ..+.+++
T Consensus 92 ~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~--~P~y~~~~~~~--~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~ 167 (396)
T PRK09147 92 QVLPVNGSREALFAFAQTVIDRDGPGPLVVCP--NPFYQIYEGAA--LLAGAEPYFLNCDPANNFAPDFDAVPAEVWART 167 (396)
T ss_pred eEEECCChHHHHHHHHHHHcCCCCCCCEEEEc--CCCccchHHHH--HhcCCEEEEeccCccccCccCHHHHHHHHhhcc
Confidence 5778888888776666655443 223345554 67777665443 3357777776531 12 1112344
Q ss_pred cEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 524 dkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
..+++- .==-+-|.++++-=-..++-+|+.|++.
T Consensus 168 k~i~l~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~ 201 (396)
T PRK09147 168 QLLFVC-SPGNPTGAVLPLDDWKKLFALSDRYGFV 201 (396)
T ss_pred EEEEEc-CCCCCcCccCCHHHHHHHHHHHHHcCeE
Confidence 455441 1112223333333345566677777764
No 259
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=29.92 E-value=2.9e+02 Score=25.06 Aligned_cols=92 Identities=18% Similarity=0.215 Sum_probs=54.7
Q ss_pred EEEecCcHHHHHHHHHHHHhCCceEEEEcCCC--------------CCchHH----HHHHHHHhC--CCceEEEecch--
Q 008627 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSR--------------PKHEGK----LLLRRLVRK--GLSCTYTHINA-- 515 (559)
Q Consensus 458 ILT~g~SstV~~iL~~A~e~Gk~FrViVvESR--------------P~~EG~----~LAk~L~~~--GI~vTyI~DsA-- 515 (559)
||..|..++=..+++.....|.. ++.++|.. +..-|+ .+++.|.+. +++++.+....
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~-~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVG-KITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCC-EEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 67777776666677776666653 44444432 111132 234455543 45665554332
Q ss_pred --HHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 516 --ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 516 --vs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
...++.+.|.||.+.|.. --...+.-.|+.+++||
T Consensus 81 ~~~~~~~~~~diVi~~~d~~---------~~~~~l~~~~~~~~i~~ 117 (143)
T cd01483 81 DNLDDFLDGVDLVIDAIDNI---------AVRRALNRACKELGIPV 117 (143)
T ss_pred hhHHHHhcCCCEEEECCCCH---------HHHHHHHHHHHHcCCCE
Confidence 235677899998887752 23566777889999985
No 260
>PRK06225 aspartate aminotransferase; Provisional
Probab=29.88 E-value=3.2e+02 Score=28.69 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=32.7
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~ 512 (559)
+...++++|.|.+..+..++......|. +|++.+ |.+.... ..+...|..+.++.
T Consensus 81 ~~~~~v~~~~g~t~al~~~~~~~~~~gd--~vl~~~--p~y~~~~--~~~~~~g~~~~~v~ 135 (380)
T PRK06225 81 LDDDEALITAGATESLYLVMRAFLSPGD--NAVTPD--PGYLIID--NFASRFGAEVIEVP 135 (380)
T ss_pred CCCCcEEEeCCHHHHHHHHHHHhcCCCC--EEEEcC--CCCcchH--HHHHHhCceEEeec
Confidence 3455788888888777666665543343 455554 5554322 33345677777765
No 261
>PRK09411 carbamate kinase; Reviewed
Probab=29.86 E-value=2.2e+02 Score=30.38 Aligned_cols=61 Identities=13% Similarity=0.136 Sum_probs=39.6
Q ss_pred HHHhcccCCCEEEEecCcHHHHHHHHHHHHhC----CceEEEEcCCCCCchHHHHHHHHHhCCCce
Q 008627 447 HAVTKIRDGDVLLTYGSSSAVEMILQHAHELG----KQFRVVIVDSRPKHEGKLLLRRLVRKGLSC 508 (559)
Q Consensus 447 ~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~G----k~FrViVvESRP~~EG~~LAk~L~~~GI~v 508 (559)
+.++++.+..+|+||||..-|-.+++...... -.+.|.+.+|- .+=|..|..+|...|++.
T Consensus 35 ~ia~l~~~~~~vitHGNGPQVG~l~~~~~~~~~~~~~pld~~~a~sq-G~iGy~l~q~l~~~~~~~ 99 (297)
T PRK09411 35 ALARLARSYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQ-GMIGYMLAQSLSAQPQMP 99 (297)
T ss_pred HHHHHHHcCCEEEEeCCccHHHHHHHHHHhhcCCCCCCchhhhhhcc-cHHHHHHHHHHHHcCCCC
Confidence 33345555789999999999976666532211 23455555553 445778889999888753
No 262
>PRK07503 methionine gamma-lyase; Provisional
Probab=29.83 E-value=3.6e+02 Score=29.30 Aligned_cols=95 Identities=17% Similarity=0.161 Sum_probs=45.3
Q ss_pred EEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH-HH-HHHHHhCCCceEEEecc---hHHHHhc-cccEEEEcc
Q 008627 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LL-LRRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGA 530 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~-~L-Ak~L~~~GI~vTyI~Ds---Avs~iM~-~VdkVlLGA 530 (559)
.|++-+-+..+..+|......|. +|++. .|.+.+. .+ ...+...|+.+.++... .+-..+. +...|++ .
T Consensus 83 ~i~~~sG~~Al~~~l~~ll~~Gd--~Viv~--~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~l-e 157 (403)
T PRK07503 83 AVALASGMGAITATLWTLLRPGD--EVIVD--QTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAALKAAISDKTRMVYF-E 157 (403)
T ss_pred EEEEcCHHHHHHHHHHHHcCCCC--EEEEc--cCccchHHHHHHHHHhhCCEEEEEeCCCCHHHHHHhcCccCcEEEE-e
Confidence 34444444444444443333333 45553 3444332 22 23455678888777532 3333333 3444444 2
Q ss_pred eeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 531 daIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.-.-..|.++. -..|+-+|+.+|++|
T Consensus 158 ~p~NPtG~~~d---i~~I~~la~~~gi~l 183 (403)
T PRK07503 158 TPANPNMRLVD---IAAVAEIAHGAGAKV 183 (403)
T ss_pred CCCCCCCeeeC---HHHHHHHHHHcCCEE
Confidence 22233354443 245677778888764
No 263
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=29.82 E-value=3e+02 Score=29.19 Aligned_cols=55 Identities=24% Similarity=0.329 Sum_probs=30.4
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~ 512 (559)
+....+++|.|.+..+..++....+.|. +|++. .|.+.... ..+...|+.+.++.
T Consensus 93 ~~~~~i~~t~G~~~al~~~~~~l~~~gd--~v~i~--~P~y~~~~--~~~~~~g~~v~~~~ 147 (401)
T TIGR01264 93 IEADDVVLCSGCSHAIEMCIAALANAGQ--NILVP--RPGFPLYE--TLAESMGIEVKLYN 147 (401)
T ss_pred CCHHHEEECcChHHHHHHHHHHhCCCCC--EEEEe--CCCChhHH--HHHHHcCCEEEEee
Confidence 3444577777777766655554433333 45554 36654332 33445677776654
No 264
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=29.78 E-value=1.2e+02 Score=33.01 Aligned_cols=80 Identities=23% Similarity=0.207 Sum_probs=44.6
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCc--hHHHHHHHHHhC--CCc-eEEEecchHHHHhc--cccEEEE
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKH--EGKLLLRRLVRK--GLS-CTYTHINAISYIIH--EVTRVFL 528 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~--EG~~LAk~L~~~--GI~-vTyI~DsAvs~iM~--~VdkVlL 528 (559)
.+||..+++.....+++.|++.| ++|+++.+.+.. .+..++.+..-. +.+ -.|+...++-.+.+ ++|.|+-
T Consensus 3 k~iLi~g~g~~a~~i~~aa~~~G--~~vv~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p 80 (451)
T PRK08591 3 DKILIANRGEIALRIIRACKELG--IKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHP 80 (451)
T ss_pred ceEEEECCCHHHHHHHHHHHHcC--CeEEEEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEEE
Confidence 46999999999999999998866 567777554432 223222211000 000 02222233333322 5899988
Q ss_pred cceeeecCC
Q 008627 529 GASSVLSNG 537 (559)
Q Consensus 529 GAdaIlaNG 537 (559)
|.+-+..|+
T Consensus 81 ~~~~~~e~~ 89 (451)
T PRK08591 81 GYGFLSENA 89 (451)
T ss_pred CCCccccCH
Confidence 875555553
No 265
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=29.58 E-value=1.8e+02 Score=28.36 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=42.5
Q ss_pred CCCEEEEecCcHHH-HHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhcc-----
Q 008627 454 DGDVLLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIHE----- 522 (559)
Q Consensus 454 dGdvILT~g~SstV-~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~~----- 522 (559)
.|-+||..|-++-+ ..+.+...++| .+|++++.++ .+...+...+.+.|.++.++. | ..+..++.+
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G--~~V~~~~r~~-~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAG--AEVILNGRDP-AKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcC--CEEEEEeCCH-HHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 35678888877655 44445555555 5788775443 344556667766666665542 2 334444443
Q ss_pred --ccEEEEcc
Q 008627 523 --VTRVFLGA 530 (559)
Q Consensus 523 --VdkVlLGA 530 (559)
+|.||..|
T Consensus 86 ~~~d~li~~a 95 (255)
T PRK07523 86 GPIDILVNNA 95 (255)
T ss_pred CCCCEEEECC
Confidence 56666554
No 266
>PLN02214 cinnamoyl-CoA reductase
Probab=29.29 E-value=3.4e+02 Score=28.39 Aligned_cols=102 Identities=20% Similarity=0.155 Sum_probs=56.2
Q ss_pred CCCEEEEecCcHHHHH-HHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhccccEEE
Q 008627 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIHEVTRVF 527 (559)
Q Consensus 454 dGdvILT~g~SstV~~-iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~~VdkVl 527 (559)
.+.+||+.|.++-+-. ++..+.++| ++|+++.-.+..........|...+-.++++. | ..+..+|+.+|.||
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERG--YTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCc--CEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 3567888888877754 444455555 45655532222111111233332111344442 2 45566778888888
Q ss_pred EcceeeecCCc---eecccchHHHHHHHhhCCC
Q 008627 528 LGASSVLSNGT---VCSRVGTACVAMVAYGFHI 557 (559)
Q Consensus 528 LGAdaIlaNGs---VvNKvGT~~IALaAk~~~V 557 (559)
--|-.+..+-. -.|-.||..+.-+|+.+++
T Consensus 87 h~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v 119 (342)
T PLN02214 87 HTASPVTDDPEQMVEPAVNGAKFVINAAAEAKV 119 (342)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 77743322111 1366789998888887775
No 267
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=29.24 E-value=2.9e+02 Score=30.41 Aligned_cols=95 Identities=23% Similarity=0.295 Sum_probs=43.9
Q ss_pred EEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH-HHH-HHHHhCCCceEEEec---chHHHHhc-cccEEEEcc
Q 008627 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHI---NAISYIIH-EVTRVFLGA 530 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~-~LA-k~L~~~GI~vTyI~D---sAvs~iM~-~VdkVlLGA 530 (559)
.|+|-+-+..+..+|....+.|. +|++.+ +.+.|. .+. ..|...|+++.++.. ..+-..+. ++..|++ .
T Consensus 76 ~l~~ssG~~Ai~~al~al~~~Gd--~Vl~~~--~~Y~~t~~~~~~~l~~~gi~v~~~d~~d~e~le~ai~~~tklV~l-e 150 (425)
T PRK06084 76 ALAVASGMAAITYAIQTIAEAGD--NIVSVA--KLYGGTYNLLAHTLPRIGIETRFAAHDDIAALEALIDERTKAVFC-E 150 (425)
T ss_pred eeEehhHHHHHHHHHHHHhCCCC--EEEEeC--CCcchHHHHHHHhcccceeEEEEECCCCHHHHHHHhccCCcEEEE-e
Confidence 34443333444444444333343 454443 334332 222 223345777776641 33444443 4555555 2
Q ss_pred eeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 531 daIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.---..|.++. -..|+-+|++++++|
T Consensus 151 sp~NPtG~v~d---l~~I~~la~~~~i~v 176 (425)
T PRK06084 151 SIGNPAGNIID---IQALADAAHRHGVPL 176 (425)
T ss_pred CCCCCCCeecC---HHHHHHHHHHcCCEE
Confidence 22233444443 255666778887764
No 268
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=29.11 E-value=1.6e+02 Score=29.54 Aligned_cols=75 Identities=23% Similarity=0.255 Sum_probs=52.3
Q ss_pred EcCCCCCchHHHHHHHHHhCCCceEEEe---cchHHHH---hccccEEEEcceeeec---------CC--ceecccchHH
Q 008627 485 IVDSRPKHEGKLLLRRLVRKGLSCTYTH---INAISYI---IHEVTRVFLGASSVLS---------NG--TVCSRVGTAC 547 (559)
Q Consensus 485 VvESRP~~EG~~LAk~L~~~GI~vTyI~---DsAvs~i---M~~VdkVlLGAdaIla---------NG--sVvNKvGT~~ 547 (559)
|+-..+..+...+++.|.+.||.+.-|+ ..++-.+ -++.+.++|||-+|+. .| .+++..-.-.
T Consensus 9 Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~~~ 88 (201)
T PRK06015 9 VLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPGTTQE 88 (201)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCCCCHH
Confidence 4445566778888999999998765555 3333332 2346679999988873 23 3677777778
Q ss_pred HHHHHhhCCCCC
Q 008627 548 VAMVAYGFHIPV 559 (559)
Q Consensus 548 IALaAk~~~VPV 559 (559)
+.-.|+++++|+
T Consensus 89 vi~~a~~~~i~~ 100 (201)
T PRK06015 89 LLAAANDSDVPL 100 (201)
T ss_pred HHHHHHHcCCCE
Confidence 888889998885
No 269
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=28.96 E-value=2.3e+02 Score=28.96 Aligned_cols=92 Identities=16% Similarity=0.173 Sum_probs=50.0
Q ss_pred HHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHh-CCceEEEEcC----CCCCchHHHHHHHHHhC-CCceEEEe----
Q 008627 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHEL-GKQFRVVIVD----SRPKHEGKLLLRRLVRK-GLSCTYTH---- 512 (559)
Q Consensus 443 ~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~-Gk~FrViVvE----SRP~~EG~~LAk~L~~~-GI~vTyI~---- 512 (559)
..+++..++|.+|+ ++-+||.+|+..+..+.... .+..+|+-+- ....++.-.+++.|++. |-.+.++.
T Consensus 41 ~aA~~L~~~l~~~~-~iGv~wG~Tl~~~~~~l~~~~~~~~~vV~l~Gg~~~~~~~~~~~i~~~lA~~~g~~~~~l~aP~~ 119 (255)
T PF04198_consen 41 AAAEYLSELLKDGD-VIGVGWGRTLYAVANHLPPKSLPNVTVVPLIGGVGNSNSYQANEIARRLAEKLGGKYYFLPAPAF 119 (255)
T ss_dssp HHHHHHHHH--TTE-EEEE-TSHHHHHHHHTS--SSSSCEEEEESBSBTTTSSGGSHHHHHHHHHHHHTSEEE---SBSB
T ss_pred HHHHHHHHhCCCCC-EEEEcchHHHHHHHHhcCccCCCCcEEEECCCCCCCCCCcCHHHHHHHHHHHhCCcEEEEeCCcc
Confidence 34555555778887 67779999999988876652 2344555332 12225666777777753 54555443
Q ss_pred -cchHH--HHh------------ccccEEEEcceeeec
Q 008627 513 -INAIS--YII------------HEVTRVFLGASSVLS 535 (559)
Q Consensus 513 -DsAvs--~iM------------~~VdkVlLGAdaIla 535 (559)
++.-. .+| +++|.+|+|--.+..
T Consensus 120 ~~s~~~~~~l~~~~~i~~~l~~~~~~dial~giG~~~~ 157 (255)
T PF04198_consen 120 VDSPELRDALLAEPSIREVLDLARKADIALVGIGSPSS 157 (255)
T ss_dssp -SSHHHHHHHHTSHHHHHHHHHHCT-SEEEEEEEEHHH
T ss_pred CCCHHHHHHHHhChHHHHHHHHHHhCCEEEEecCCCCC
Confidence 22211 122 269999999876665
No 270
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=28.77 E-value=5.3e+02 Score=27.76 Aligned_cols=105 Identities=12% Similarity=0.115 Sum_probs=64.2
Q ss_pred HHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCC---------CC---------chHHHHHHHHHhC-
Q 008627 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR---------PK---------HEGKLLLRRLVRK- 504 (559)
Q Consensus 444 Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESR---------P~---------~EG~~LAk~L~~~- 504 (559)
+...+.++|.+ .+||.+|..++-..++..+...|.. +++++|.. -. ..-..+++.|.+.
T Consensus 125 ~g~~~q~~l~~-~~VlvvG~GG~Gs~ia~~La~~Gvg-~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 202 (376)
T PRK08762 125 VGEEGQRRLLE-ARVLLIGAGGLGSPAALYLAAAGVG-TLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN 202 (376)
T ss_pred cCHHHHHHHhc-CcEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC
Confidence 44445566744 5788889988777777777666753 45555432 10 1122345666654
Q ss_pred -CCceEEEe----cchHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 505 -GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 505 -GI~vTyI~----DsAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.+.++.+. ...+..++.++|.||-..|.+-. -+.+.-+|..++|||
T Consensus 203 p~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~---------r~~ln~~~~~~~ip~ 253 (376)
T PRK08762 203 PDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPT---------RYLLNDACVKLGKPL 253 (376)
T ss_pred CCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHH---------HHHHHHHHHHcCCCE
Confidence 34544443 22345677899999988886531 234667889999986
No 271
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=28.64 E-value=1.8e+02 Score=30.40 Aligned_cols=102 Identities=13% Similarity=-0.012 Sum_probs=58.1
Q ss_pred CCCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHH---hCCC-ceEEEe-c----chHHHHhccc
Q 008627 454 DGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLV---RKGL-SCTYTH-I----NAISYIIHEV 523 (559)
Q Consensus 454 dGdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~---~~GI-~vTyI~-D----sAvs~iM~~V 523 (559)
.+.+||..|-++-+- .++....+.| .+|++++-++......+..... ...+ .+.++. | ..+..+++++
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~ 91 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFLN--QTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV 91 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC
Confidence 456899999887774 3444444444 5788887654322222211111 1111 233332 2 3566778889
Q ss_pred cEEEEcceeeec---CC-----ceecccchHHHHHHHhhCCC
Q 008627 524 TRVFLGASSVLS---NG-----TVCSRVGTACVAMVAYGFHI 557 (559)
Q Consensus 524 dkVlLGAdaIla---NG-----sVvNKvGT~~IALaAk~~~V 557 (559)
|.||--|-.... +. .-.|-.||..+.-+|+++++
T Consensus 92 d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~ 133 (348)
T PRK15181 92 DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHV 133 (348)
T ss_pred CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 988877643211 11 12567899999988888876
No 272
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=28.50 E-value=1e+03 Score=27.88 Aligned_cols=81 Identities=12% Similarity=0.223 Sum_probs=39.6
Q ss_pred hcccCCCEEEEecCc-----HHHHHHHHHHHHhCCceEEEEcCCCCCchHH-HHHHHH-HhCCCceEEEec-chHHHHhc
Q 008627 450 TKIRDGDVLLTYGSS-----SAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLRRL-VRKGLSCTYTHI-NAISYIIH 521 (559)
Q Consensus 450 ~~I~dGdvILT~g~S-----stV~~iL~~A~e~Gk~FrViVvESRP~~EG~-~LAk~L-~~~GI~vTyI~D-sAvs~iM~ 521 (559)
+++..|.+|+.+|-+ .++.++...+...+...+|.+++..++.-|. +.++.+ ...|+++....+ ..+..+|.
T Consensus 345 ~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~ 424 (559)
T PRK12727 345 DPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLE 424 (559)
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHH
Confidence 467778888888765 3444444444443323455555554544332 222222 224565554432 22333332
Q ss_pred ---cccEEEEcc
Q 008627 522 ---EVTRVFLGA 530 (559)
Q Consensus 522 ---~VdkVlLGA 530 (559)
+.|.|||=.
T Consensus 425 ~l~~~DLVLIDT 436 (559)
T PRK12727 425 RLRDYKLVLIDT 436 (559)
T ss_pred HhccCCEEEecC
Confidence 456565533
No 273
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=28.50 E-value=1.2e+02 Score=26.33 Aligned_cols=39 Identities=21% Similarity=0.063 Sum_probs=28.5
Q ss_pred chHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcc
Q 008627 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (559)
Q Consensus 492 ~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGA 530 (559)
.+-.++++.+.+.|++|..|+++.-..+-+.+|.+|.-.
T Consensus 67 ~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~~~ 105 (131)
T PF01380_consen 67 RELIELLRFAKERGAPVILITSNSESPLARLADIVLYIP 105 (131)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEE
T ss_pred hhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEEec
Confidence 344455677777888888888887788878888877644
No 274
>PRK08328 hypothetical protein; Provisional
Probab=28.49 E-value=4.6e+02 Score=26.37 Aligned_cols=105 Identities=14% Similarity=0.093 Sum_probs=63.7
Q ss_pred HHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCC---------CC-----CchHHH----H-HHHHHhC
Q 008627 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDS---------RP-----KHEGKL----L-LRRLVRK 504 (559)
Q Consensus 444 Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvES---------RP-----~~EG~~----L-Ak~L~~~ 504 (559)
+...+.++|.+ .+||..|..++-..++......|.. +++++|. |- ..-|+. . +++|.+.
T Consensus 17 ~g~~~q~~L~~-~~VlIiG~GGlGs~ia~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~ 94 (231)
T PRK08328 17 FGVEGQEKLKK-AKVAVVGVGGLGSPVAYYLAAAGVG-RILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERF 94 (231)
T ss_pred cCHHHHHHHhC-CcEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHh
Confidence 55666777764 6799999998887788877777754 3444442 11 112331 2 3345543
Q ss_pred --CCceEEEe----cchHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 505 --GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 505 --GI~vTyI~----DsAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.|.++.+. ...+..+++++|.||...|..- --+.+.-+|+.+++|+
T Consensus 95 np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~---------~r~~l~~~~~~~~ip~ 146 (231)
T PRK08328 95 NSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFE---------TRYLLDDYAHKKGIPL 146 (231)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHH---------HHHHHHHHHHHcCCCE
Confidence 45554433 2234456788999988877631 1245556788999985
No 275
>PRK06108 aspartate aminotransferase; Provisional
Probab=28.42 E-value=3.7e+02 Score=27.97 Aligned_cols=56 Identities=16% Similarity=0.105 Sum_probs=32.0
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI 513 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D 513 (559)
+....+++|.|.+..+..++....+.|. +|++. .|.+.+.. ..+...|+++.++..
T Consensus 82 ~~~~~i~~t~g~~~al~~~~~~l~~~gd--~vl~~--~p~y~~~~--~~~~~~g~~~~~v~~ 137 (382)
T PRK06108 82 TPPERIAVTSSGVQALMLAAQALVGPGD--EVVAV--TPLWPNLV--AAPKILGARVVCVPL 137 (382)
T ss_pred cCcceEEEeCChHHHHHHHHHHhcCCCC--EEEEe--CCCccchH--HHHHHCCCEEEEeeC
Confidence 4455678888877776655554444333 45553 35554432 234456888777653
No 276
>PRK06835 DNA replication protein DnaC; Validated
Probab=28.40 E-value=2.5e+02 Score=30.13 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=12.8
Q ss_pred cCCCEEEEecCcHHHHHHHHH
Q 008627 453 RDGDVLLTYGSSSAVEMILQH 473 (559)
Q Consensus 453 ~dGdvILT~g~SstV~~iL~~ 473 (559)
..+..++-||.+++=.-.|..
T Consensus 181 ~~~~~Lll~G~~GtGKThLa~ 201 (329)
T PRK06835 181 KNNENLLFYGNTGTGKTFLSN 201 (329)
T ss_pred ccCCcEEEECCCCCcHHHHHH
Confidence 345678888887654444443
No 277
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=28.29 E-value=6.5e+02 Score=25.58 Aligned_cols=91 Identities=13% Similarity=0.070 Sum_probs=40.5
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc---hHHHHhccc----cEEEE
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---AISYIIHEV----TRVFL 528 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds---Avs~iM~~V----dkVlL 528 (559)
+.|++.+.+..+..+|..+.+.|. .|++ + .|.+.....+ +...|+++.++... .+-..+... .++++
T Consensus 78 ~~i~~~~G~~~~~~~l~~~~~~gd--~v~~-~-~~~~~~~~~~--~~~~g~~~~~~~~~d~~~l~~~~~~~~~~~~~~v~ 151 (360)
T TIGR00858 78 AALLFSSGYLANVGVISALVGKGD--LILS-D-ALNHASLIDG--CRLSGARVRRYRHNDVEHLERLLEKNRGERRKLIV 151 (360)
T ss_pred CEEEECchHHHHHHHHHHhCCCCC--EEEE-E-ccccHHHHHH--HHhcCCceEEecCCCHHHHHHHHHHcccCCCeEEE
Confidence 344444434444444444333232 3443 3 3555443332 33457777666422 333334321 23333
Q ss_pred cceeeecCCceecccc----hHHHHHHHhhCCCCC
Q 008627 529 GASSVLSNGTVCSRVG----TACVAMVAYGFHIPV 559 (559)
Q Consensus 529 GAdaIlaNGsVvNKvG----T~~IALaAk~~~VPV 559 (559)
-+.+.|..| -..|+-+|+.+++.+
T Consensus 152 -------~~~~~~~~G~~~~~~~i~~l~~~~~~~l 179 (360)
T TIGR00858 152 -------TDGVFSMDGDIAPLPQLVALAERYGAWL 179 (360)
T ss_pred -------EeCCccCCCCCcCHHHHHHHHHHcCcEE
Confidence 122334333 245666788887753
No 278
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=28.16 E-value=71 Score=28.92 Aligned_cols=91 Identities=18% Similarity=0.134 Sum_probs=0.0
Q ss_pred EEEEecCcHHHHHHHHHHHHhCCceEEE-EcCCCC-CchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceeee
Q 008627 457 VLLTYGSSSAVEMILQHAHELGKQFRVV-IVDSRP-KHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~Gk~FrVi-VvESRP-~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIl 534 (559)
.|+.+|+++-+-+.|..+..+...|++. +++.++ .+.|+.+..-+......+... ..+..++.++|.||
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~--~~l~~~~~~~DVvI------- 72 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVT--DDLEELLEEADVVI------- 72 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEB--S-HHHHTTH-SEEE-------
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccc--hhHHHhcccCCEEE-------
Q ss_pred cCCceecccchHHHHHHHhhCCCCC
Q 008627 535 SNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 535 aNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+.-+.-+++..+-.|.++++|+
T Consensus 73 ---DfT~p~~~~~~~~~~~~~g~~~ 94 (124)
T PF01113_consen 73 ---DFTNPDAVYDNLEYALKHGVPL 94 (124)
T ss_dssp ---EES-HHHHHHHHHHHHHHT-EE
T ss_pred ---EcCChHHhHHHHHHHHhCCCCE
No 279
>PRK08912 hypothetical protein; Provisional
Probab=28.04 E-value=5e+02 Score=27.38 Aligned_cols=51 Identities=25% Similarity=0.320 Sum_probs=30.5
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~ 512 (559)
++|+|.|.+..+..++....+.|. +|+|.+ |.+.+... .+...|+.+.++.
T Consensus 89 ~i~~t~G~~~al~~~~~~~~~~gd--~Vlv~~--p~y~~~~~--~~~~~g~~~~~~~ 139 (387)
T PRK08912 89 EVMVTSGATEALAAALLALVEPGD--EVVLFQ--PLYDAYLP--LIRRAGGVPRLVR 139 (387)
T ss_pred cEEEeCCcHHHHHHHHHHhcCCCC--EEEEeC--CCchhhHH--HHHHcCCEEEEEe
Confidence 788898888877655555443332 455543 66655443 2345677766554
No 280
>PRK07904 short chain dehydrogenase; Provisional
Probab=28.03 E-value=2.2e+02 Score=28.16 Aligned_cols=79 Identities=13% Similarity=0.164 Sum_probs=45.6
Q ss_pred cccCCCEEEEecCcHHHHHHHHH-HHHhCCceEEEEcCCCCCchHHHHHHHHHhCC-CceEEEe-c----ch----HHHH
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQH-AHELGKQFRVVIVDSRPKHEGKLLLRRLVRKG-LSCTYTH-I----NA----ISYI 519 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~-A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~G-I~vTyI~-D----sA----vs~i 519 (559)
.+.++.+||..|-|+-+-..|.. ..++| .++|+++.-++...-.+++++|...| .+++++. | .. +..+
T Consensus 4 ~~~~~~~vlItGas~giG~~la~~l~~~g-g~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~ 82 (253)
T PRK07904 4 AVGNPQTILLLGGTSEIGLAICERYLKNA-PARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAA 82 (253)
T ss_pred ccCCCcEEEEEcCCcHHHHHHHHHHHhcC-CCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHH
Confidence 34567788888888766544444 34432 36888886555433445667776654 3555542 3 22 2333
Q ss_pred hc--cccEEEEcc
Q 008627 520 IH--EVTRVFLGA 530 (559)
Q Consensus 520 M~--~VdkVlLGA 530 (559)
+. ++|.+|.++
T Consensus 83 ~~~g~id~li~~a 95 (253)
T PRK07904 83 FAGGDVDVAIVAF 95 (253)
T ss_pred HhcCCCCEEEEee
Confidence 32 588888765
No 281
>PRK14362 Maf-like protein; Provisional
Probab=27.97 E-value=2.1e+02 Score=28.82 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=46.7
Q ss_pred EEecCcHHHH-HHHHHHHHhCCceEEE---EcC-C-CCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEccee
Q 008627 459 LTYGSSSAVE-MILQHAHELGKQFRVV---IVD-S-RPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (559)
Q Consensus 459 LT~g~SstV~-~iL~~A~e~Gk~FrVi---VvE-S-RP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAda 532 (559)
|.++.+|--. ++|..+ |..|.|+ +.| + .+...-.+++.+|+..+-. ++..- .-+.++||||+
T Consensus 14 iILAS~SprR~eLL~~~---g~~f~v~~~~~dEe~~~~~~~p~~~v~~lA~~KA~-------~v~~~--~~~~~VI~ADT 81 (207)
T PRK14362 14 VVLASGSPRRREFLEQM---GLPFEVILPGAAEPSPIEGEQPEAYARRAAEAKAR-------AVAAD--HAGRLVIAADT 81 (207)
T ss_pred EEEeCCCHHHHHHHHHC---CCCcEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHh--CCCCEEEEeCe
Confidence 3455554444 445443 8889988 345 3 2222345677777654211 11111 13579999999
Q ss_pred ee-cCCceecccchHHHH
Q 008627 533 VL-SNGTVCSRVGTACVA 549 (559)
Q Consensus 533 Il-aNGsVvNKvGT~~IA 549 (559)
|. -||.++.|-.+..-|
T Consensus 82 vV~~~g~ilgKP~~~eeA 99 (207)
T PRK14362 82 VVALDGMILGKPADRADA 99 (207)
T ss_pred EEEeCCEEcCCCCCHHHH
Confidence 65 788899988877655
No 282
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=27.95 E-value=1.2e+02 Score=31.51 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=33.2
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHH
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRL 501 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L 501 (559)
.+..|++||.+|.+.+-..++..|+..| .+||+++..+.. .+++++|
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~--~~~a~~~ 208 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAA--RRLALAL 208 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHH--HHHHHHh
Confidence 5778999999998666566666676656 468888776553 4555554
No 283
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=27.94 E-value=3.7e+02 Score=26.21 Aligned_cols=81 Identities=14% Similarity=0.159 Sum_probs=53.4
Q ss_pred cCcHHHHHHHHHHHHhCCceEEEEcCCCCC--chHHHHHHHHHhCCCceEEEec----chHHHHhccccEEEEcceeeec
Q 008627 462 GSSSAVEMILQHAHELGKQFRVVIVDSRPK--HEGKLLLRRLVRKGLSCTYTHI----NAISYIIHEVTRVFLGASSVLS 535 (559)
Q Consensus 462 g~SstV~~iL~~A~e~Gk~FrViVvESRP~--~EG~~LAk~L~~~GI~vTyI~D----sAvs~iM~~VdkVlLGAdaIla 535 (559)
+....+.+.|..|.+++...=|+.++|.=+ ..+..+.+.|....+++..... ++-.++.--+|++++.-++.+-
T Consensus 13 ~~~~~l~~~l~~a~~~~~~~ivl~inspGG~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG 92 (178)
T cd07021 13 GLAAFVERALKEAKEEGADAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIG 92 (178)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEECcCCCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEe
Confidence 344567788888887764545555555332 3677889999998888766554 3333444579999888777776
Q ss_pred CCceecc
Q 008627 536 NGTVCSR 542 (559)
Q Consensus 536 NGsVvNK 542 (559)
.-+++.-
T Consensus 93 ~~~~v~~ 99 (178)
T cd07021 93 AAEPIPG 99 (178)
T ss_pred cCeeEcC
Confidence 6555543
No 284
>PRK11263 cardiolipin synthase 2; Provisional
Probab=27.93 E-value=2.4e+02 Score=31.10 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhCCceEEEEcCC-CCCchHHHHHHHHHhCCCceEEEe
Q 008627 465 SAVEMILQHAHELGKQFRVVIVDS-RPKHEGKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 465 stV~~iL~~A~e~Gk~FrViVvES-RP~~EG~~LAk~L~~~GI~vTyI~ 512 (559)
..+...|..|.++|.+.+|++..- .+ .....+.++|.+.||++.+..
T Consensus 48 ~~l~~aL~~aa~rGV~Vril~D~~gs~-~~~~~~~~~L~~aGv~v~~~~ 95 (411)
T PRK11263 48 KQLHAALLAAAQRGVKVEVLVDGYGSP-DLSDEFVNELTAAGVRFRYFD 95 (411)
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCC-CCCHHHHHHHHHCCeEEEEeC
Confidence 467788888888888888776431 12 234677899999999998764
No 285
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=27.84 E-value=2.5e+02 Score=28.74 Aligned_cols=38 Identities=29% Similarity=0.380 Sum_probs=26.9
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCC
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP 490 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP 490 (559)
+..|++||.+|.+.+-..++..|+..|.+ +|+++++.+
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~-~vi~~~~~~ 198 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAE-DVIGVDPSP 198 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCC-EEEEECCCH
Confidence 56799999999765555666667666643 488887654
No 286
>PRK02186 argininosuccinate lyase; Provisional
Probab=27.80 E-value=1.7e+02 Score=35.25 Aligned_cols=16 Identities=19% Similarity=0.133 Sum_probs=11.4
Q ss_pred cchHHHHHHHhhCCCC
Q 008627 543 VGTACVAMVAYGFHIP 558 (559)
Q Consensus 543 vGT~~IALaAk~~~VP 558 (559)
.+...+|.+|.++++|
T Consensus 80 ~~v~~aa~lae~lglp 95 (887)
T PRK02186 80 YFIEVASEVARRLGLP 95 (887)
T ss_pred hhHHHHHHHHHHhCcC
Confidence 4556677778888877
No 287
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=27.72 E-value=4.7e+02 Score=26.67 Aligned_cols=90 Identities=18% Similarity=0.200 Sum_probs=45.2
Q ss_pred EEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------------chHHHHhc---
Q 008627 459 LTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------------NAISYIIH--- 521 (559)
Q Consensus 459 LT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D--------------sAvs~iM~--- 521 (559)
+|-|.+..+..+|..+...| -+|++. ||.+.... .-+...|+.+.|+.. ..+-..+.
T Consensus 80 ~~~Gst~a~~~~l~al~~~g--d~Vlv~--~~~h~s~~--~~~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~ 153 (294)
T cd00615 80 LVNGTSSSNKAVILAVCGPG--DKILID--RNCHKSVI--NGLVLSGAVPVYLKPERNPYYGIAGGIPPETFKKALIEHP 153 (294)
T ss_pred EcCcHHHHHHHHHHHcCCCC--CEEEEe--CCchHHHH--HHHHHCCCEEEEecCccCcccCcCCCCCHHHHHHHHHhCC
Confidence 35554444444544443333 345544 44444432 223345666666531 12333332
Q ss_pred cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 522 ~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
++..|++-.. ...|.++. -..|+-+|+.+++++
T Consensus 154 ~~k~v~l~~p--~~~G~~~d---l~~I~~~~~~~g~~l 186 (294)
T cd00615 154 DAKAAVITNP--TYYGICYN---LRKIVEEAHHRGLPV 186 (294)
T ss_pred CceEEEEECC--CCCCEecC---HHHHHHHHHhcCCeE
Confidence 3556666532 23565554 356788888888864
No 288
>PRK06207 aspartate aminotransferase; Provisional
Probab=27.71 E-value=4.9e+02 Score=27.93 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=28.5
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEE
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT 511 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI 511 (559)
.++++|.|.+..+..++....+.| -+|+|. .|.+.+.. ..+...|..+..+
T Consensus 103 ~~I~it~Ga~~al~~~~~~l~~~G--d~Vlv~--~P~y~~~~--~~~~~~g~~v~~v 153 (405)
T PRK06207 103 DELIITPGTQGALFLAVAATVARG--DKVAIV--QPDYFANR--KLVEFFEGEMVPV 153 (405)
T ss_pred CCEEEeCCcHHHHHHHHHHhcCCC--CEEEEe--CCCchhHH--HHHHHcCCEEEEE
Confidence 578888888877766665544433 244443 36665543 2233446655544
No 289
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=27.64 E-value=2.4e+02 Score=30.05 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=26.5
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHH---HhCCceEEEEcC-CCCCchHHHHHHHHHh
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAH---ELGKQFRVVIVD-SRPKHEGKLLLRRLVR 503 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~---e~Gk~FrViVvE-SRP~~EG~~LAk~L~~ 503 (559)
.+++|.-|+.+++.+++..+++.+. ++|...+||-+- =.|..+- .+.+.+.+
T Consensus 197 vl~~G~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~l~Pld~~-~i~~~~~~ 252 (327)
T PRK09212 197 ILREGSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRTLRPLDTE-TIIESVKK 252 (327)
T ss_pred EEEeCCCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEecCCCCCHH-HHHHHHHh
Confidence 4556666666777777666655543 345555544222 2454433 33344433
No 290
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=27.62 E-value=1.8e+02 Score=29.24 Aligned_cols=78 Identities=21% Similarity=0.271 Sum_probs=49.6
Q ss_pred cCcHHHHHHHHHHHHhCCceEEEEcC--CCC--CchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceeeec-C
Q 008627 462 GSSSAVEMILQHAHELGKQFRVVIVD--SRP--KHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS-N 536 (559)
Q Consensus 462 g~SstV~~iL~~A~e~Gk~FrViVvE--SRP--~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIla-N 536 (559)
|.|..=.++|..+ |..|+|++.| ..+ ..+-.+++.+|+..+- .++....+ .|.+|||||.|+. |
T Consensus 9 S~SPrR~elL~~~---gi~f~~~~~~iDE~~~~~~~P~~~v~~LA~~KA-------~~va~~~~-~~~~VigaDtvv~ld 77 (193)
T COG0424 9 SSSPRRRELLEQL---GIPFEVIPSDIDEPLLKAEEPREYVLRLAEEKA-------RAVAARLP-PDALVIGADTVVVLD 77 (193)
T ss_pred cCCHHHHHHHHHC---CCCeEEecCCCCCCcccCCCHHHHHHHHHHHHH-------HHHHHhCC-CCCEEEecCeEEEEC
Confidence 3344445666666 8899999774 333 2235677888876421 12222222 5899999998765 6
Q ss_pred CceecccchHHHHH
Q 008627 537 GTVCSRVGTACVAM 550 (559)
Q Consensus 537 GsVvNKvGT~~IAL 550 (559)
|.++.|-.+..-|.
T Consensus 78 grilgKP~~~~eA~ 91 (193)
T COG0424 78 GRILGKPKDEEEAR 91 (193)
T ss_pred CEEecCCCCHHHHH
Confidence 77999988876653
No 291
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=27.60 E-value=4.1e+02 Score=31.03 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcccCC-----CEEEEe--cCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec
Q 008627 441 DRVIVKHAVTKIRDG-----DVLLTY--GSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI 513 (559)
Q Consensus 441 ~e~Ia~~Aa~~I~dG-----dvILT~--g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D 513 (559)
.++|.....+...|+ .|||+. |+...|...|+.|.+..++.++|++|-.|.----..-+.....+=.||+|.-
T Consensus 349 q~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~ 428 (649)
T KOG0822|consen 349 QQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISS 428 (649)
T ss_pred HHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEec
Confidence 344555555565554 356666 5668999999999988899999999999973211111222334557888864
Q ss_pred chHHHH
Q 008627 514 NAISYI 519 (559)
Q Consensus 514 sAvs~i 519 (559)
.+=.+-
T Consensus 429 DMR~w~ 434 (649)
T KOG0822|consen 429 DMRKWN 434 (649)
T ss_pred cccccC
Confidence 443333
No 292
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=27.60 E-value=4.2e+02 Score=23.22 Aligned_cols=55 Identities=11% Similarity=0.012 Sum_probs=30.4
Q ss_pred cCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 008627 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 453 ~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~ 512 (559)
....+++|.+.+..+..++..+... ..+|++.+. .+-|... ..+...|.++.++.
T Consensus 16 ~~~~~~~~~~~t~a~~~~~~~~~~~--~~~v~~~~~--~~~~~~~-~~~~~~g~~~~~v~ 70 (170)
T cd01494 16 GNDKAVFVPSGTGANEAALLALLGP--GDEVIVDAN--GHGSRYW-VAAELAGAKPVPVP 70 (170)
T ss_pred CCCcEEEeCCcHHHHHHHHHHhCCC--CCEEEEeec--ccceehh-hHHHhcCCEEEEec
Confidence 4456777777776666666655432 346666652 2223221 33445677777664
No 293
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=27.55 E-value=2.7e+02 Score=24.58 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=36.5
Q ss_pred cccCCCEEEEecCcH---HHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecch
Q 008627 451 KIRDGDVLLTYGSSS---AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA 515 (559)
Q Consensus 451 ~I~dGdvILT~g~Ss---tV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsA 515 (559)
.+..+|+++.+++|+ -+...++.|++.|. +||.+-+. + .+++.-.+.|+.+..+++..
T Consensus 40 ~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~--~iI~IT~~----~-~l~~~~~~~~~~~~~~p~~~ 100 (119)
T cd05017 40 FVDRKTLVIAVSYSGNTEETLSAVEQAKERGA--KIVAITSG----G-KLLEMAREHGVPVIIIPKGL 100 (119)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCC--EEEEEeCC----c-hHHHHHHHcCCcEEECCCCC
Confidence 567889999998874 45567777777654 44433221 1 25554444688888877644
No 294
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=27.49 E-value=8.6e+02 Score=26.74 Aligned_cols=60 Identities=20% Similarity=0.110 Sum_probs=35.5
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI 513 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D 513 (559)
.|..++.++....+..+.....+.|-...++++++.+..--..+.+.+...+.++.++.+
T Consensus 299 ~gkrv~v~g~~~~~~~l~~~L~elG~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~~~ 358 (429)
T cd03466 299 FGRKAAIYGEPDFVVAITRFVLENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVILDG 358 (429)
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEEeC
Confidence 577889998887776666666666765545556554433223333444555566655554
No 295
>PRK14852 hypothetical protein; Provisional
Probab=27.48 E-value=5e+02 Score=32.34 Aligned_cols=125 Identities=11% Similarity=0.079 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcC------CCCCc-------
Q 008627 426 HSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVD------SRPKH------- 492 (559)
Q Consensus 426 ~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvE------SRP~~------- 492 (559)
.+.-+.|.+++...-...|...+.++|++ .+|+..|.+++-..++......|.. +++++| |.-..
T Consensus 304 ~~~~~~~~~~ry~Rqi~lig~e~Q~kL~~-srVlVvGlGGlGs~ia~~LAraGVG-~I~L~D~D~Ve~SNLNRQ~l~~~~ 381 (989)
T PRK14852 304 LETRDAYTDIAFSRNLGLVDYAGQRRLLR-SRVAIAGLGGVGGIHLMTLARTGIG-NFNLADFDAYSPVNLNRQYGASIA 381 (989)
T ss_pred HHHHHHHHHHHhhchHhhcCHHHHHHHhc-CcEEEECCcHHHHHHHHHHHHcCCC-eEEEEcCCEecccccccccCCChh
Confidence 35566777665432223355666777764 6899999998877777777766754 344333 21111
Q ss_pred -hHH----HHHHHHHhC--CCceEEEe----cchHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 493 -EGK----LLLRRLVRK--GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 493 -EG~----~LAk~L~~~--GI~vTyI~----DsAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
-|+ .+++.|.+. .++++.+. ...+..++..+|.||-+.|.+.. .+--+... .|..+||||
T Consensus 382 dIG~~Kaevaa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~------~~rr~l~~-~c~~~~IP~ 452 (989)
T PRK14852 382 SFGRGKLDVMTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFAL------DIRRRLFN-RALELGIPV 452 (989)
T ss_pred hCCChHHHHHHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccH------HHHHHHHH-HHHHcCCCE
Confidence 122 245666654 46666553 34566778899999988775421 11122233 367889986
No 296
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=27.48 E-value=1e+03 Score=27.66 Aligned_cols=94 Identities=12% Similarity=0.076 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhcccC--CCEEEEecCc------HHHHHHHHHHHHhCCceEEEEcCCCCCchHH-HHHHHHHhCCCc
Q 008627 437 IILADRVIVKHAVTKIRD--GDVLLTYGSS------SAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLRRLVRKGLS 507 (559)
Q Consensus 437 I~~A~e~Ia~~Aa~~I~d--GdvILT~g~S------stV~~iL~~A~e~Gk~FrViVvESRP~~EG~-~LAk~L~~~GI~ 507 (559)
++.|...+++...+.+.. +..||++|-. +.|. -++++..|.+..|++.. +....-. .+...|...|++
T Consensus 115 ME~AG~avA~~I~~~~~~~~~~~VlVlcGpGNNGGDGLVa--AR~L~~~G~~V~V~~~~-~~~~~~~~~~~~~~~~~gi~ 191 (544)
T PLN02918 115 MELAGLSVAASIAEVYKPGEYSRVLAICGPGNNGGDGLVA--ARHLHHFGYKPFVCYPK-RTAKPLYTGLVTQLESLSVP 191 (544)
T ss_pred HHHHHHHHHHHHHHhcccccCCEEEEEECCCcCHHHHHHH--HHHHHHCCCceEEEEcC-CCCcHHHHHHHHHHHHcCCC
Confidence 345666777666655543 3678888765 3332 23444557777777633 3222212 245677778887
Q ss_pred eEEEecchHHHHhccccEEEEcceeeecCC
Q 008627 508 CTYTHINAISYIIHEVTRVFLGASSVLSNG 537 (559)
Q Consensus 508 vTyI~DsAvs~iM~~VdkVlLGAdaIlaNG 537 (559)
+..+.+-. ..+....|.|| |+||--|
T Consensus 192 ~~~~~~~~-~~l~~~~DlIV---DALFGtG 217 (544)
T PLN02918 192 FVSVEDLP-ADLSKDFDIIV---DAMFGFS 217 (544)
T ss_pred eeeccccc-hhhccCCCEEE---EeccccC
Confidence 53332200 11114567654 6777666
No 297
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=27.21 E-value=5.9e+02 Score=29.06 Aligned_cols=84 Identities=13% Similarity=0.229 Sum_probs=51.8
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcc
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGA 530 (559)
..-.|.+|+.+|+...=..+...++..| .+|+|+|..|...- .+. ..|..+. . +..+++.+|.|++-+
T Consensus 250 ~~LaGKtVgVIG~G~IGr~vA~rL~a~G--a~ViV~e~dp~~a~--~A~---~~G~~~~--~---leell~~ADIVI~at 317 (476)
T PTZ00075 250 VMIAGKTVVVCGYGDVGKGCAQALRGFG--ARVVVTEIDPICAL--QAA---MEGYQVV--T---LEDVVETADIFVTAT 317 (476)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhHH--HHH---hcCceec--c---HHHHHhcCCEEEECC
Confidence 3446899999999987777777776544 58999988776421 111 2365432 1 334567888887632
Q ss_pred --eeee--------cCCceecccchH
Q 008627 531 --SSVL--------SNGTVCSRVGTA 546 (559)
Q Consensus 531 --daIl--------aNGsVvNKvGT~ 546 (559)
..++ .+|.++-.+|-.
T Consensus 318 Gt~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 318 GNKDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred CcccccCHHHHhccCCCcEEEEcCCC
Confidence 2222 466655555554
No 298
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=27.17 E-value=2.2e+02 Score=26.31 Aligned_cols=7 Identities=29% Similarity=0.406 Sum_probs=2.8
Q ss_pred eEEEEcC
Q 008627 481 FRVVIVD 487 (559)
Q Consensus 481 FrViVvE 487 (559)
|+|||+|
T Consensus 28 ~eiiVvd 34 (214)
T cd04196 28 DELIISD 34 (214)
T ss_pred eEEEEEe
Confidence 3444433
No 299
>PRK08636 aspartate aminotransferase; Provisional
Probab=27.15 E-value=4.1e+02 Score=28.34 Aligned_cols=96 Identities=13% Similarity=0.052 Sum_probs=53.8
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---c-----------hHHHHhc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---N-----------AISYIIH 521 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D---s-----------Avs~iM~ 521 (559)
.+++|.|....+..++....+.|. .|+ ++ .|.+.+...+-.+ .|+++..+.. . .+...++
T Consensus 97 ~I~it~G~~~al~~~~~~l~~~gd--~Vl-v~-~P~y~~~~~~~~~--~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 170 (403)
T PRK08636 97 EVVATMGSKEGYVHLVQAITNPGD--VAI-VP-DPAYPIHSQAFIL--AGGNVHKMPLEYNEDFELDEDQFFENLEKALR 170 (403)
T ss_pred eEEECCChHHHHHHHHHHhCCCCC--EEE-Ec-CCCCcchHHHHHh--cCCEEEEEeccccccCccChhhhhhHHHHHHh
Confidence 588999988887666665444342 444 44 3888776554333 6777766532 2 1222232
Q ss_pred ----cccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 522 ----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 522 ----~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
++..+++- .-=-+.|.+++.-==..|+-+|++|++.
T Consensus 171 ~~~~~~~~i~~~-~P~NPTG~~~s~~~~~~l~~~a~~~~~~ 210 (403)
T PRK08636 171 ESSPKPKYVVVN-FPHNPTTATVEKSFYERLVALAKKERFY 210 (403)
T ss_pred hccCCceEEEEe-CCCCCCCccCCHHHHHHHHHHHHHcCcE
Confidence 34444442 1113446666655556677778888764
No 300
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=27.02 E-value=2.8e+02 Score=26.30 Aligned_cols=73 Identities=14% Similarity=0.198 Sum_probs=45.1
Q ss_pred CCCEEEEec--CcHHHHHHHHHHHHhCCceEEEEcCC--CCCc-hHHHHHHH-HHhCCCceEEEecchHHHHhccccEEE
Q 008627 454 DGDVLLTYG--SSSAVEMILQHAHELGKQFRVVIVDS--RPKH-EGKLLLRR-LVRKGLSCTYTHINAISYIIHEVTRVF 527 (559)
Q Consensus 454 dGdvILT~g--~SstV~~iL~~A~e~Gk~FrViVvES--RP~~-EG~~LAk~-L~~~GI~vTyI~DsAvs~iM~~VdkVl 527 (559)
+|-+|.-.| ++.++..++.-+..-|-.|.++.-+. -|.. +-...+++ ..+.|..+++. ..+...++++|.|.
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~--~~~~e~l~~aDvvy 78 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITIT--DDIEEALKGADVVY 78 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEE--SSHHHHHTT-SEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEE--eCHHHhcCCCCEEE
Confidence 355677776 57898888888877776665555554 2221 12223333 34457777777 56777788888876
Q ss_pred E
Q 008627 528 L 528 (559)
Q Consensus 528 L 528 (559)
.
T Consensus 79 ~ 79 (158)
T PF00185_consen 79 T 79 (158)
T ss_dssp E
T ss_pred E
Confidence 5
No 301
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.96 E-value=3.5e+02 Score=30.10 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=40.2
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcc
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGA 530 (559)
+..|+.+|.-..=..+.+.+++.| ++|++.|.++..+. ...|.+.|+.+.+....-....+.++|.||+..
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G--~~v~~~D~~~~~~~---~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp 77 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHG--ARLRVADTREAPPN---LAALRAELPDAEFVGGPFDPALLDGVDLVALSP 77 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCC--CEEEEEcCCCCchh---HHHHHhhcCCcEEEeCCCchhHhcCCCEEEECC
Confidence 445666654433334555555555 68999998875432 334777755554443321223445788887754
No 302
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=26.74 E-value=2.3e+02 Score=28.85 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=25.6
Q ss_pred hHHHHHHHHHhCCCceEEEecc-hHHHHh--ccccEEEEcce
Q 008627 493 EGKLLLRRLVRKGLSCTYTHIN-AISYII--HEVTRVFLGAS 531 (559)
Q Consensus 493 EG~~LAk~L~~~GI~vTyI~Ds-Avs~iM--~~VdkVlLGAd 531 (559)
.|..+.+.|.+.|++|.+|..+ -+...+ .++|.||...+
T Consensus 24 s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~ 65 (304)
T PRK01372 24 SGAAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNALH 65 (304)
T ss_pred hHHHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEecC
Confidence 4677888888888888888532 232222 25788887654
No 303
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=26.73 E-value=2.3e+02 Score=31.28 Aligned_cols=100 Identities=14% Similarity=0.103 Sum_probs=56.5
Q ss_pred CCEEEEecCcHHHHH-HHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceee
Q 008627 455 GDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (559)
Q Consensus 455 GdvILT~g~SstV~~-iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaI 533 (559)
..+||+.|-++-|-. ++....+.| .+|++++.........+. .+.. ...++++....+...+.++|.||--|-..
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G--~~V~~ldr~~~~~~~~~~-~~~~-~~~~~~~~~Di~~~~~~~~D~ViHlAa~~ 195 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRG--DEVIVIDNFFTGRKENLV-HLFG-NPRFELIRHDVVEPILLEVDQIYHLACPA 195 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCCCccHhHhh-hhcc-CCceEEEECccccccccCCCEEEECceec
Confidence 478999999988754 444455544 578888743221111121 1211 12455554333334456788887766322
Q ss_pred ecCCc--------eecccchHHHHHHHhhCCCC
Q 008627 534 LSNGT--------VCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 534 laNGs--------VvNKvGT~~IALaAk~~~VP 558 (559)
..... -.|-.||..+.-+|+.+++.
T Consensus 196 ~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r 228 (436)
T PLN02166 196 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAR 228 (436)
T ss_pred cchhhccCHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 11111 16788999999888887753
No 304
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=26.54 E-value=1.3e+02 Score=31.73 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=18.7
Q ss_pred eeecCCceecccchHHHHHHHhhCCCCC
Q 008627 532 SVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 532 aIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.|.=||-.++-.| .-|++|-+|||||
T Consensus 125 ~v~iNG~~~gE~~--lNa~~Ag~~gVPV 150 (270)
T cd08769 125 NIWINGKEMNETL--INAAYAGEFGVPV 150 (270)
T ss_pred EEEECCEEcCHHH--HHHHHHhhcCCCE
Confidence 3444666666555 4688999999997
No 305
>PRK10481 hypothetical protein; Provisional
Probab=26.48 E-value=3e+02 Score=28.22 Aligned_cols=84 Identities=12% Similarity=0.061 Sum_probs=47.3
Q ss_pred HHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc----hHHHHhccccE-EEEcceeeecCCceecccc
Q 008627 470 ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----AISYIIHEVTR-VFLGASSVLSNGTVCSRVG 544 (559)
Q Consensus 470 iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds----Avs~iM~~Vdk-VlLGAdaIlaNGsVvNKvG 544 (559)
-+..|.-.|++|-|++..- .++.+..++....|+++.+...+ ....+..-+.. .--|||+|+-++.=++.
T Consensus 121 ~lv~Al~~g~riGVitP~~---~qi~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~-- 195 (224)
T PRK10481 121 PLVAAIVGGHQVGVIVPVE---EQLAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQ-- 195 (224)
T ss_pred HHHHHhcCCCeEEEEEeCH---HHHHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCH--
Confidence 3444555677888886532 24555677777778888877632 11111111110 11455555555544443
Q ss_pred hHHHHHHHhhCCCCC
Q 008627 545 TACVAMVAYGFHIPV 559 (559)
Q Consensus 545 T~~IALaAk~~~VPV 559 (559)
.....+.+..++||
T Consensus 196 -~~~~~le~~lg~PV 209 (224)
T PRK10481 196 -RHRDLLQKALDVPV 209 (224)
T ss_pred -HHHHHHHHHHCcCE
Confidence 45778888899987
No 306
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=26.47 E-value=7.7e+02 Score=25.85 Aligned_cols=74 Identities=15% Similarity=0.258 Sum_probs=36.1
Q ss_pred eEEEEcCCCCCchHHH--HHHHHHhCCCceEEEecc---------hHHHHhccccEEEEcceeeecCCceecccchHHHH
Q 008627 481 FRVVIVDSRPKHEGKL--LLRRLVRKGLSCTYTHIN---------AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVA 549 (559)
Q Consensus 481 FrViVvESRP~~EG~~--LAk~L~~~GI~vTyI~Ds---------Avs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IA 549 (559)
-+|++.+ |.+-+.. +.......|+++.++... .+...+.+-+++++-.+.-..+|.+.. .-.|+
T Consensus 105 d~vl~~~--~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~---~~~i~ 179 (397)
T TIGR01976 105 DEVIVTR--LDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSPRTRLVAVTAASNTLGSIVD---LAAIT 179 (397)
T ss_pred CEEEEcC--CchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhcCCCceEEEEeCCCCCCCccCC---HHHHH
Confidence 4666654 3333321 122334578888877532 122222222344443333344554432 34577
Q ss_pred HHHhhCCCCC
Q 008627 550 MVAYGFHIPV 559 (559)
Q Consensus 550 LaAk~~~VPV 559 (559)
-+|+++|+.|
T Consensus 180 ~~~~~~~~~~ 189 (397)
T TIGR01976 180 ELVHAAGALV 189 (397)
T ss_pred HHHHHcCCEE
Confidence 7788888753
No 307
>PRK05967 cystathionine beta-lyase; Provisional
Probab=26.40 E-value=3.9e+02 Score=29.30 Aligned_cols=96 Identities=17% Similarity=0.100 Sum_probs=49.3
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHH-HH-HHHHhCCCceEEEec---chHHHHhc-cccEEEEc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-RRLVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~-LA-k~L~~~GI~vTyI~D---sAvs~iM~-~VdkVlLG 529 (559)
+.|+|.+-+..+..++....+.|. +|++. .|.+.|-. ++ ..|...||.++++.. .++...+. +...|++-
T Consensus 81 ~~v~~sSG~aAi~~~l~all~~GD--~Vlv~--~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e~l~~al~~~TklV~le 156 (395)
T PRK05967 81 GTILVPSGLAAVTVPFLGFLSPGD--HALIV--DSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAKLMRPNTKVVHTE 156 (395)
T ss_pred CEEEECcHHHHHHHHHHHhcCCCC--EEEEc--cCCcHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHhcCcCceEEEEE
Confidence 456666655555555555544443 55555 45555543 33 345567888887753 23454454 33333332
Q ss_pred ceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
. .. | -+....=-..|+-+|+++|++|
T Consensus 157 s--Ps-N-P~l~v~dl~~I~~la~~~g~~v 182 (395)
T PRK05967 157 A--PG-S-NTFEMQDIPAIAEAAHRHGAIV 182 (395)
T ss_pred C--CC-C-CCCcHHHHHHHHHHHHHhCCEE
Confidence 1 11 1 1222223345666777777653
No 308
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=26.40 E-value=3.8e+02 Score=28.57 Aligned_cols=100 Identities=16% Similarity=0.142 Sum_probs=60.9
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHH-hCCCceEEEecchHHHHhccccEEEEcceeee
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLV-RKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~-~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIl 534 (559)
|..+.+--...|..+|+++.+.|.+.-||+.+.-+.....++..+.+ +.|| .++=-|.++.+-....++..-.....
T Consensus 71 DlAvI~vPa~~v~~al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~gi--rviGPNc~Gii~~~~~~~~~~~~~~~ 148 (300)
T PLN00125 71 NASVIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKT--RLIGPNCPGIIKPGECKIGIMPGYIH 148 (300)
T ss_pred CEEEEecCHHHHHHHHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhcCC--EEECCCCceeecccccceeecCCCCC
Confidence 66777777888899999999988888888888777654445544433 3444 44445555555443222111111223
Q ss_pred cCC--ceecccchHHHHHH--HhhCCC
Q 008627 535 SNG--TVCSRVGTACVAMV--AYGFHI 557 (559)
Q Consensus 535 aNG--sVvNKvGT~~IALa--Ak~~~V 557 (559)
.-| +++++.|+...+++ +.+.++
T Consensus 149 ~~G~ValiSQSG~l~~~l~~~~~~~gi 175 (300)
T PLN00125 149 KPGRIGIVSRSGTLTYEAVFQTTAVGL 175 (300)
T ss_pred CCCcEEEEeCCccHHHHHHHHHHHcCC
Confidence 345 37999998777765 444544
No 309
>PRK06234 methionine gamma-lyase; Provisional
Probab=26.36 E-value=6e+02 Score=27.49 Aligned_cols=95 Identities=17% Similarity=0.180 Sum_probs=43.9
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH-HH-HHHHHhCCCceEEEecc---hHHHHhc-cccEEEEc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LL-LRRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~-~L-Ak~L~~~GI~vTyI~Ds---Avs~iM~-~VdkVlLG 529 (559)
+.|+|-+-+..+..+|....+.|. +|++.+ |.+.+. .+ ...+...|+++.++... .+-..+. +...|++-
T Consensus 81 ~~l~~~sG~~Ai~~al~~ll~~Gd--~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~~i~~~tklI~ie 156 (400)
T PRK06234 81 AAVVAASGMGAISSSLWSALKAGD--HVVASD--TLYGCTFALLNHGLTRYGVEVTFVDTSNLEEVRNALKANTKVVYLE 156 (400)
T ss_pred cEEEEcCHHHHHHHHHHHHhCCCC--EEEEec--CccchHHHHHHHHHhhCCeEEEEECCCCHHHHHHHhccCCeEEEEE
Confidence 445555555555544544444443 455543 444332 22 23455678887777533 2333332 23333332
Q ss_pred ceeeecCCceecccchHHHHHHHhhC--CCC
Q 008627 530 ASSVLSNGTVCSRVGTACVAMVAYGF--HIP 558 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~~IALaAk~~--~VP 558 (559)
.---..|.+.. -..|+-+|+.+ ++.
T Consensus 157 -sP~NPtG~v~d---l~~I~~la~~~~~~i~ 183 (400)
T PRK06234 157 -TPANPTLKVTD---IKAISNIAHENNKECL 183 (400)
T ss_pred -CCCCCCCCcCC---HHHHHHHHHhcCCCCE
Confidence 11122344333 23566666665 554
No 310
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=26.36 E-value=2.1e+02 Score=24.60 Aligned_cols=9 Identities=22% Similarity=0.394 Sum_probs=3.9
Q ss_pred CEEEEecCc
Q 008627 456 DVLLTYGSS 464 (559)
Q Consensus 456 dvILT~g~S 464 (559)
++|++-..|
T Consensus 28 ~iivvdd~s 36 (180)
T cd06423 28 EVIVVDDGS 36 (180)
T ss_pred EEEEEeCCC
Confidence 444444333
No 311
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=26.28 E-value=6.3e+02 Score=27.62 Aligned_cols=73 Identities=18% Similarity=0.159 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCC--CCCchHHHHHHHHHhCCCc
Q 008627 430 ERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDS--RPKHEGKLLLRRLVRKGLS 507 (559)
Q Consensus 430 d~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvES--RP~~EG~~LAk~L~~~GI~ 507 (559)
+.+++|+....+..+-.+ .++. | .+..+++...+..+...+.+.|-..-.+++.. ++.. ......|...|+.
T Consensus 259 e~~~~~e~~~~~~~ld~~--~~l~-g-kv~v~g~~~~~~~la~~L~elGmevv~~~t~~~~~~~~--~~~~~~l~~~~~~ 332 (416)
T cd01980 259 RKVANEEKAAAKGAIRAF--SPIK-G-RVLVSGYEGNELLVARLLIESGAEVPYVSTSIPKTSLS--APDYEWLSALGVE 332 (416)
T ss_pred HHHHHHHHHHHHHHHhhH--HhhC-c-eEEEECCCchhHHHHHHHHHcCCEEEEEecCCCChhhh--HHHHHHHHhcCCc
Confidence 445555545555555444 2455 5 67778888777776666777665433333322 2222 2344445555544
Q ss_pred e
Q 008627 508 C 508 (559)
Q Consensus 508 v 508 (559)
+
T Consensus 333 v 333 (416)
T cd01980 333 V 333 (416)
T ss_pred c
Confidence 3
No 312
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=26.08 E-value=1.4e+02 Score=33.66 Aligned_cols=69 Identities=22% Similarity=0.255 Sum_probs=41.0
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEE
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlL 528 (559)
+..|+.+|.-.+=..+.+..++.| .+|+|.|.+|.-++.... .|...||.+..-.... .....+|.|++
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G--~~v~v~D~~~~~~~~~~~-~~~~~~i~~~~g~~~~--~~~~~~d~vV~ 75 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG--AEVTVSDDRPAPEGLAAQ-PLLLEGIEVELGSHDD--EDLAEFDLVVK 75 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC--CeEEEEcCCCCccchhhh-hhhccCceeecCccch--hccccCCEEEE
Confidence 677777765443344555555545 799999999988665444 5555666555443222 33345555544
No 313
>PLN00203 glutamyl-tRNA reductase
Probab=26.00 E-value=2.8e+02 Score=31.72 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=47.1
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcc
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGA 530 (559)
+..|+.+|....-..++..+...|. -+|+|++ |-......++.++. |+.+.++....+...+.++|.||...
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~-~~V~V~n-Rs~era~~La~~~~--g~~i~~~~~~dl~~al~~aDVVIsAT 337 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGC-TKMVVVN-RSEERVAALREEFP--DVEIIYKPLDEMLACAAEADVVFTST 337 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCC-CeEEEEe-CCHHHHHHHHHHhC--CCceEeecHhhHHHHHhcCCEEEEcc
Confidence 6789999998777777777766542 2566664 33233344454442 56666666556677788999988753
No 314
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=25.98 E-value=3.3e+02 Score=29.83 Aligned_cols=87 Identities=14% Similarity=0.038 Sum_probs=50.8
Q ss_pred CCCEEEEecCcHHHHH-HHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEccee
Q 008627 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (559)
Q Consensus 454 dGdvILT~g~SstV~~-iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAda 532 (559)
.+..|+.+|-..+=.. +.+.+++ ...+|++.|.++.. ...+|.+.||.+.+ .... ..+.++|.|+++...
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~--~G~~V~~~D~~~~~----~~~~l~~~gi~~~~--~~~~-~~~~~~d~vv~spgi 76 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLN--LGYKVSGSDLKESA----VTQRLLELGAIIFI--GHDA-ENIKDADVVVYSSAI 76 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHh--CCCeEEEECCCCCh----HHHHHHHCCCEEeC--CCCH-HHCCCCCEEEECCCC
Confidence 4456777766544444 2333444 34689999988764 23457778887765 2222 234578888776422
Q ss_pred eecCCceecccchHHHHHHHhhCCCCC
Q 008627 533 VLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 533 IlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
=. +...-..|+++|+||
T Consensus 77 ~~----------~~~~~~~a~~~~i~i 93 (461)
T PRK00421 77 PD----------DNPELVAARELGIPV 93 (461)
T ss_pred CC----------CCHHHHHHHHCCCcE
Confidence 11 223455677778775
No 315
>PRK12452 cardiolipin synthetase; Reviewed
Probab=25.84 E-value=4e+02 Score=30.28 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=37.0
Q ss_pred EEE-e-cCcHHHHHHHHHHHHhCCceEEEEcCCCCCchH-----HHHHHHHHhCCCceEEEe
Q 008627 458 LLT-Y-GSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-----KLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 458 ILT-~-g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG-----~~LAk~L~~~GI~vTyI~ 512 (559)
|.| | .....+...|+.|...|.+.++++-+ ++...+ +...++|.+.||++....
T Consensus 362 I~tpYf~pd~~l~~aL~~Aa~rGV~Vrii~p~-~~D~~~~~~a~~~~~~~L~~aGv~I~~y~ 422 (509)
T PRK12452 362 IATPYFIPDQETLTLLRLSAISGIDVRILYPG-KSDSIISDQASQSYFTPLLKAGASIYSYK 422 (509)
T ss_pred EECCccCCCHHHHHHHHHHHHcCCEEEEEcCC-CCChHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 555 2 34467778888888888888877643 554433 334678999999986554
No 316
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=25.83 E-value=3.5e+02 Score=30.29 Aligned_cols=71 Identities=20% Similarity=0.265 Sum_probs=44.8
Q ss_pred CCEEEEecCc--HHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHH-HhCCC--ceEEEecchHHHHhc-cccEEE
Q 008627 455 GDVLLTYGSS--SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRL-VRKGL--SCTYTHINAISYIIH-EVTRVF 527 (559)
Q Consensus 455 GdvILT~g~S--stV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L-~~~GI--~vTyI~DsAvs~iM~-~VdkVl 527 (559)
+.+||..|.. -++..++..+.+.+...+||.+|-.|.- ...++.+ ...|. .|++|...+=-.-++ +||.+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A--~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNA--VVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHH--HHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhH--HHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEE
Confidence 4689998765 4556677776677888999999987742 2233444 44544 688887655555455 577775
No 317
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=25.69 E-value=2.5e+02 Score=31.29 Aligned_cols=66 Identities=17% Similarity=0.176 Sum_probs=43.1
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEE
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlL 528 (559)
.+..|++|+++|+...=..+...++..|- +|+|+|..|... ..|+ ..|..+.. . ...+..+|.||.
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga--~ViV~d~d~~R~--~~A~---~~G~~~~~--~---~e~v~~aDVVI~ 263 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGA--RVIVTEVDPICA--LQAA---MEGYEVMT--M---EEAVKEGDIFVT 263 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEECChhhH--HHHH---hcCCEEcc--H---HHHHcCCCEEEE
Confidence 34579999999999877777777776665 799999877641 2233 34664331 1 234456777763
No 318
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=25.58 E-value=4.5e+02 Score=28.07 Aligned_cols=53 Identities=19% Similarity=0.227 Sum_probs=33.2
Q ss_pred CCceEEEEcCCCCCchHHHHHHHHHhCCCceE--------------EEec--chHHHHhccccEEEEcce
Q 008627 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCT--------------YTHI--NAISYIIHEVTRVFLGAS 531 (559)
Q Consensus 478 Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vT--------------yI~D--sAvs~iM~~VdkVlLGAd 531 (559)
...++++++-..|.. ..++.+.+.+.|+... ++.| ..+..++..+|.+|+|..
T Consensus 260 ~~~~~liivG~g~~r-~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S 328 (425)
T PRK05749 260 FPNLLLILVPRHPER-FKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGS 328 (425)
T ss_pred CCCcEEEEcCCChhh-HHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCC
Confidence 456777777444432 2346666677787532 2222 467888889999888754
No 319
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=25.57 E-value=53 Score=33.60 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhcCchhh-hH-HHHHHHHHHHHHh
Q 008627 378 TAKISSYVSFLIDCRPLSV-SM-GNAIRFLKSQIAK 411 (559)
Q Consensus 378 ~~~L~~~i~~L~~aRPtsv-sm-gNAIrrlk~~I~~ 411 (559)
...+..++++|.+-+|--+ .+ .++...+++.+..
T Consensus 45 ~~~~~~~~~~l~~~~~DlIi~~gt~aa~~~~~~~~~ 80 (294)
T PF04392_consen 45 PEKLRQIARKLKAQKPDLIIAIGTPAAQALAKHLKD 80 (294)
T ss_dssp HHHHHHHHHHHCCTS-SEEEEESHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHhcCC
Confidence 3456677777777787532 33 3566666666654
No 320
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=25.43 E-value=67 Score=31.08 Aligned_cols=55 Identities=25% Similarity=0.277 Sum_probs=33.1
Q ss_pred EEEEecC--cHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCc-eEEEecchH
Q 008627 457 VLLTYGS--SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLS-CTYTHINAI 516 (559)
Q Consensus 457 vILT~g~--SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~-vTyI~DsAv 516 (559)
|+|+-.. +.....+|..+++. .+.|+++=+||...-..+++.| |++ +-+|+.|..
T Consensus 9 TLL~~~~~~~~~~~~~l~~l~~~--gi~~~i~TgR~~~~~~~~~~~l---~~~~~~~I~~NGa 66 (221)
T TIGR02463 9 TLLDSHSYDWQPAAPWLTRLQEA--GIPVILCTSKTAAEVEYLQKAL---GLTGDPYIAENGA 66 (221)
T ss_pred CCcCCCCCCcHHHHHHHHHHHHC--CCeEEEEcCCCHHHHHHHHHHc---CCCCCcEEEeCCc
Confidence 5555322 33345777777664 4678888888887666556554 444 455655544
No 321
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=25.41 E-value=3.3e+02 Score=29.20 Aligned_cols=50 Identities=22% Similarity=0.181 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhCCceEEEEcCCCCCchHH--HHHHHHHhCCCceEEEecch
Q 008627 466 AVEMILQHAHELGKQFRVVIVDSRPKHEGK--LLLRRLVRKGLSCTYTHINA 515 (559)
Q Consensus 466 tV~~iL~~A~e~Gk~FrViVvESRP~~EG~--~LAk~L~~~GI~vTyI~DsA 515 (559)
.+...+..|++.|....+.+..+.-..... ++++.+.+.|+++.|+.|++
T Consensus 116 ~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~ 167 (337)
T PRK08195 116 VSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSA 167 (337)
T ss_pred HHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCC
Confidence 445555566666655555544442221111 33555566666666666643
No 322
>PLN02735 carbamoyl-phosphate synthase
Probab=25.40 E-value=3.6e+02 Score=33.67 Aligned_cols=58 Identities=12% Similarity=0.200 Sum_probs=36.6
Q ss_pred HHHHHHhCCCceEEEe------cchHHHHhc-cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 497 LLRRLVRKGLSCTYTH------INAISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 497 LAk~L~~~GI~vTyI~------DsAvs~iM~-~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+++.|.++||+|+.+. .+.+-.+.. ++|.||-= .+|.-.-..-.|.+=.+|-.+|||+
T Consensus 1007 Ta~~L~~~Gi~~~~v~~~~~~~~~~~~~i~~~~i~~vin~-----~~~~~~~~~d~~~iRr~a~~~~ip~ 1071 (1102)
T PLN02735 1007 TAHFLELAGIPVERVLKLHEGRPHAGDMLANGQIQLMVIT-----SSGDALDQKDGRQLRRMALAYKVPI 1071 (1102)
T ss_pred HHHHHHHCCCceEEEeeccCCCccHHHHHHcCCeEEEEEC-----CCCccccccccHHHHHHHHHcCCCE
Confidence 4667778899988763 223333333 68988743 2343221334678888899999985
No 323
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=25.39 E-value=5.2e+02 Score=28.00 Aligned_cols=13 Identities=31% Similarity=0.138 Sum_probs=6.5
Q ss_pred HHHHHHHhhCCCC
Q 008627 546 ACVAMVAYGFHIP 558 (559)
Q Consensus 546 ~~IALaAk~~~VP 558 (559)
..|+-+|+++|++
T Consensus 170 ~~I~~la~~~gi~ 182 (398)
T PRK07504 170 AAVAKIANQAGAK 182 (398)
T ss_pred HHHHHHHHHcCCE
Confidence 3444455555554
No 324
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=25.25 E-value=2.2e+02 Score=28.44 Aligned_cols=78 Identities=23% Similarity=0.335 Sum_probs=47.3
Q ss_pred ccCCCEEEEecCc-HHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCC-ceEEEe-cchHHHHhc-cccEEE
Q 008627 452 IRDGDVLLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGL-SCTYTH-INAISYIIH-EVTRVF 527 (559)
Q Consensus 452 I~dGdvILT~g~S-stV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI-~vTyI~-DsAvs~iM~-~VdkVl 527 (559)
|+.|++||=.|.. +-...+|.+.. |+..+|+-+|-.|.+--. -.+.|...|+ +++++. |...++--. ..|.++
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lv--g~~g~Vv~vE~~~~l~~~-A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~ 146 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLV--GPVGRVVSVERDPELAER-ARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRII 146 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHH--STTEEEEEEESBHHHHHH-HHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhc--CccceEEEECccHHHHHH-HHHHHHHhccCceeEEEcchhhccccCCCcCEEE
Confidence 7899999988764 33334444443 677799999987654211 2456777787 578877 544443222 479999
Q ss_pred Eccee
Q 008627 528 LGASS 532 (559)
Q Consensus 528 LGAda 532 (559)
+++-+
T Consensus 147 v~~a~ 151 (209)
T PF01135_consen 147 VTAAV 151 (209)
T ss_dssp ESSBB
T ss_pred Eeecc
Confidence 88743
No 325
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=25.23 E-value=1.6e+02 Score=29.22 Aligned_cols=94 Identities=15% Similarity=0.046 Sum_probs=55.7
Q ss_pred EEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEE--Eec-chHHHHhccc-cEEEEcceee
Q 008627 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY--THI-NAISYIIHEV-TRVFLGASSV 533 (559)
Q Consensus 458 ILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTy--I~D-sAvs~iM~~V-dkVlLGAdaI 533 (559)
||+.|.++-|-.-|.....+ ...+|+.++..+....... .++.... +.| ..+...+..+ |.||--|-..
T Consensus 3 ILVtG~tGfiG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa~~ 75 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLA-AGHDVRGLDRLRDGLDPLL------SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAAQS 75 (314)
T ss_pred EEEEcCcccHHHHHHHHHHh-CCCeEEEEeCCCccccccc------cccceeeecccchHHHHHHHhcCCCEEEEccccC
Confidence 88888888776555554432 2567777765433221111 1121111 123 5566666677 7777666555
Q ss_pred ecCCc---------eecccchHHHHHHHhhCCCC
Q 008627 534 LSNGT---------VCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 534 laNGs---------VvNKvGT~~IALaAk~~~VP 558 (559)
...+. -+|-.||..+.-+|+..+++
T Consensus 76 ~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~ 109 (314)
T COG0451 76 SVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVK 109 (314)
T ss_pred chhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 43333 58899999999999886653
No 326
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=25.19 E-value=6e+02 Score=27.87 Aligned_cols=95 Identities=17% Similarity=0.235 Sum_probs=42.9
Q ss_pred EEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHH-HH-HHHHhCCCceEEEecc---hHHHHhc-cccEEEEcc
Q 008627 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGA 530 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~-LA-k~L~~~GI~vTyI~Ds---Avs~iM~-~VdkVlLGA 530 (559)
.|++-+-+..+..+|......| -+|++.+ +.+.|.. +. ..+...|+.++++... .+-..+. ++..|++ .
T Consensus 81 al~~~SG~~Ai~~al~all~pG--d~VIv~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~v-e 155 (427)
T PRK05994 81 ALAVASGHAAQFLVFHTLLQPG--DEFIAAR--KLYGGSINQFGHAFKSFGWQVRWADADDPASFERAITPRTKAIFI-E 155 (427)
T ss_pred EEEEcCHHHHHHHHHHHHhCCC--CEEEEec--CcchhHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEE-E
Confidence 3444333344444444443333 2444433 3444432 22 3355667777777532 3333333 3334443 1
Q ss_pred eeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 531 daIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.---..|.++. -..|+-+|+++|+++
T Consensus 156 sp~NptG~v~d---l~~I~~la~~~gi~l 181 (427)
T PRK05994 156 SIANPGGTVTD---IAAIAEVAHRAGLPL 181 (427)
T ss_pred CCCCCCCeecC---HHHHHHHHHHcCCEE
Confidence 11112243332 245667788888764
No 327
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=25.18 E-value=4.9e+02 Score=28.30 Aligned_cols=96 Identities=13% Similarity=0.072 Sum_probs=45.6
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchH-HHHHHH-HHhCCCceEEEecc---hHHHHhc-cccEEEEc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLLRR-LVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG-~~LAk~-L~~~GI~vTyI~Ds---Avs~iM~-~VdkVlLG 529 (559)
.+|+|.|-+..+..++....+.|. +|++. .|.+.| ..+... +...|+.++++... .+...+. +.+.|++.
T Consensus 70 ~ivvt~gg~~Ai~~~l~all~~Gd--~Il~~--~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~~tklV~le 145 (388)
T PRK08861 70 GAVVTNCGTSALNLWVSALLGPDD--LIVAP--HDCYGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPKLILLE 145 (388)
T ss_pred eEEEECCHHHHHHHHHHHHcCCCC--EEEEc--CCchHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCcCCeEEEEE
Confidence 445555555555544444333332 44443 355655 333333 34457777776422 2333332 34455543
Q ss_pred ceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.---..|.++.. ..|+-+|++++++|
T Consensus 146 -sP~NPtG~v~dl---~~I~~la~~~gi~v 171 (388)
T PRK08861 146 -TPSNPLVRVVDI---AELCQKAKAVGALV 171 (388)
T ss_pred -CCCCCCCcccCH---HHHHHHHHHcCCEE
Confidence 111223444442 35666777777653
No 328
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=25.14 E-value=5.8e+02 Score=27.75 Aligned_cols=106 Identities=15% Similarity=0.128 Sum_probs=67.2
Q ss_pred HHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCC---------C-Cc----hHH----HHHHHHHhC
Q 008627 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR---------P-KH----EGK----LLLRRLVRK 504 (559)
Q Consensus 443 ~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESR---------P-~~----EG~----~LAk~L~~~ 504 (559)
.+...+.++|.+ .+||..|..++-..++......|.. +++++|.. - .+ -|+ .++++|.+.
T Consensus 30 ~~g~~~q~~l~~-~~VliiG~GglG~~v~~~La~~Gvg-~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~ 107 (370)
T PRK05600 30 GFGIEQQERLHN-ARVLVIGAGGLGCPAMQSLASAGVG-TITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEI 107 (370)
T ss_pred hhCHHHHHHhcC-CcEEEECCCHHHHHHHHHHHHcCCC-EEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHH
Confidence 466667777764 5799999998888888877776743 44444432 1 11 122 335666654
Q ss_pred --CCceEEEec----chHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 505 --GLSCTYTHI----NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 505 --GI~vTyI~D----sAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.++++.+.. ..+..+++++|.||-+.|.+- --+.+.-+|..+++|+
T Consensus 108 np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~---------~r~~in~~~~~~~iP~ 159 (370)
T PRK05600 108 QPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFA---------TKFLVADAAEITGTPL 159 (370)
T ss_pred CCCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHH---------HHHHHHHHHHHcCCCE
Confidence 355555542 234456789999998888643 2345666788889885
No 329
>PRK08361 aspartate aminotransferase; Provisional
Probab=25.08 E-value=4.4e+02 Score=27.84 Aligned_cols=55 Identities=18% Similarity=0.144 Sum_probs=29.7
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~ 512 (559)
+...++++|.|.+..+..++....+.| -+|++.+ |.+.+.. ..+...|+++..+.
T Consensus 91 ~~~~~i~~t~G~~~al~~~~~~l~~~g--~~Vlv~~--p~y~~~~--~~~~~~g~~~~~v~ 145 (391)
T PRK08361 91 VDVDNVIVTAGAYEATYLAFESLLEEG--DEVIIPD--PAFVCYV--EDAKIAEAKPIRIP 145 (391)
T ss_pred CCcccEEEeCChHHHHHHHHHHhcCCC--CEEEEcC--CCCcccH--HHHHHcCCEEEEEe
Confidence 445567778777666655555443333 2555554 5554432 23334677766654
No 330
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=25.02 E-value=4.4e+02 Score=22.51 Aligned_cols=57 Identities=11% Similarity=-0.013 Sum_probs=30.8
Q ss_pred HHHhCCCceEEEec------chHHHHhc--cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 500 RLVRKGLSCTYTHI------NAISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 500 ~L~~~GI~vTyI~D------sAvs~iM~--~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.+.+.|+++.++.. .++..+.. ++|.|++|...=...+. --.|+..-.+ .++.++||
T Consensus 64 ~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~--~~lGs~~~~v-~~~~~~pv 128 (132)
T cd01988 64 IAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLRD--RLFGGVIDQV-LESAPCDV 128 (132)
T ss_pred HhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCccc--eecCchHHHH-HhcCCCCE
Confidence 34457888886653 13333333 59999999985332211 1235533333 35555554
No 331
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=25.01 E-value=2.4e+02 Score=28.21 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=32.4
Q ss_pred CcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHH
Q 008627 463 SSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI 519 (559)
Q Consensus 463 ~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~i 519 (559)
++...+.++..|+.--+.+..++++=.--.+|.+.++.|.+.||+|...+.-.+...
T Consensus 59 ~~~~~e~~i~~a~~l~~~~~~~~iKIP~T~~gl~ai~~L~~~gi~v~~T~V~s~~Qa 115 (211)
T cd00956 59 VSTDAEGMVAEARKLASLGGNVVVKIPVTEDGLKAIKKLSEEGIKTNVTAIFSAAQA 115 (211)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEEcCcHhHHHHHHHHHHcCCceeeEEecCHHHH
Confidence 345566666666542111111222221222899999999999999887665444433
No 332
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=24.94 E-value=1.9e+02 Score=31.28 Aligned_cols=45 Identities=16% Similarity=0.177 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec
Q 008627 465 SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI 513 (559)
Q Consensus 465 stV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D 513 (559)
.-+...|.++.++|.+.+|++.... .....++|.+.||++..+..
T Consensus 63 ~~i~~aL~~aa~rGV~Vril~D~~~----~~~~~~~L~~~Gv~v~~~~~ 107 (369)
T PHA03003 63 RLILDKLKEAAESGVKVTILVDEQS----GDKDEEELQSSNINYIKVDI 107 (369)
T ss_pred HHHHHHHHHhccCCCeEEEEecCCC----CCccHHHHHHcCCEEEEEec
Confidence 3466677777777877777766542 24567899999999877653
No 333
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=24.90 E-value=2e+02 Score=28.98 Aligned_cols=72 Identities=25% Similarity=0.302 Sum_probs=48.0
Q ss_pred CCCCchHHHHHHHHHhCCCceEEEec---chH---HHHhccccEEEEcceeeec---------CC--ceecccchHHHHH
Q 008627 488 SRPKHEGKLLLRRLVRKGLSCTYTHI---NAI---SYIIHEVTRVFLGASSVLS---------NG--TVCSRVGTACVAM 550 (559)
Q Consensus 488 SRP~~EG~~LAk~L~~~GI~vTyI~D---sAv---s~iM~~VdkVlLGAdaIla---------NG--sVvNKvGT~~IAL 550 (559)
..+..+...+++.|.+.||++.-|+. .+. ..+-++...++|||-+|+. .| .+++..-+-.++-
T Consensus 16 ~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~~~~v~~ 95 (204)
T TIGR01182 16 IDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSPGLTPELAK 95 (204)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECCCCCHHHHH
Confidence 33456777888999999887666553 332 2333345568888887763 22 2566666778888
Q ss_pred HHhhCCCCC
Q 008627 551 VAYGFHIPV 559 (559)
Q Consensus 551 aAk~~~VPV 559 (559)
.|+++++|+
T Consensus 96 ~~~~~~i~~ 104 (204)
T TIGR01182 96 HAQDHGIPI 104 (204)
T ss_pred HHHHcCCcE
Confidence 899999884
No 334
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=24.87 E-value=5.5e+02 Score=27.06 Aligned_cols=54 Identities=11% Similarity=-0.006 Sum_probs=32.5
Q ss_pred CCEEEEec-CcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 008627 455 GDVLLTYG-SSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 455 GdvILT~g-~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~ 512 (559)
..+|+|-| -+..++.++......+++..++++ .|+ |.++++.+.+.|++++++.
T Consensus 63 ~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~~--g~~--~~~~~~~a~~~g~~~~~~~ 117 (355)
T cd00611 63 YKVLFLQGGATGQFAAVPLNLLGDKGTADYVVT--GAW--SAKAAKEAKRYGGVVVIVA 117 (355)
T ss_pred ceEEEEcCCchHHHHHHHHhcCCCCCeEEEEEC--CHH--HHHHHHHHHhcCCCcEEEe
Confidence 46788877 555666666655433444444443 444 4445555566799988876
No 335
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=24.82 E-value=1.5e+02 Score=32.80 Aligned_cols=77 Identities=17% Similarity=0.262 Sum_probs=47.3
Q ss_pred cCcHHHHHHHHHHHHh-----C-------CceEEEEcCCC-----CCchHHHHHHHHHhCCCceEEEe-cchHHHHhccc
Q 008627 462 GSSSAVEMILQHAHEL-----G-------KQFRVVIVDSR-----PKHEGKLLLRRLVRKGLSCTYTH-INAISYIIHEV 523 (559)
Q Consensus 462 g~SstV~~iL~~A~e~-----G-------k~FrViVvESR-----P~~EG~~LAk~L~~~GI~vTyI~-DsAvs~iM~~V 523 (559)
|++.-|+++|..+.+. | ..+.|+|+--. -.-...+++..|.+.||.|.+-. +..++.-|+++
T Consensus 315 ~~GiGieRli~~l~e~~~d~~g~~~P~~iaP~qV~Iipi~~~~~~~~~~a~~i~~~L~~~Gi~v~~D~~~~~lg~ki~~a 394 (439)
T PRK12325 315 SYGIGVSRLVAAIIEASHDDKGIIWPESVAPFKVGIINLKQGDEACDAACEKLYAALSAAGIDVLYDDTDERPGAKFATM 394 (439)
T ss_pred eeECCHHHHHHHHHHHhCccCCCcCCCCcCCeEEEEEecCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHhHHHHHH
Confidence 4444456665555543 4 34677766331 11234567889999999998753 45788888865
Q ss_pred cE------EEEcceeeecCCce
Q 008627 524 TR------VFLGASSVLSNGTV 539 (559)
Q Consensus 524 dk------VlLGAdaIlaNGsV 539 (559)
++ |+||-+-+ .+|.|
T Consensus 395 ~~~giP~~iiVG~~e~-~~~~V 415 (439)
T PRK12325 395 DLIGLPWQIIVGPKGL-AEGKV 415 (439)
T ss_pred HHcCCCEEEEECCccc-ccCeE
Confidence 54 77886544 45554
No 336
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=24.79 E-value=2.8e+02 Score=29.57 Aligned_cols=14 Identities=7% Similarity=-0.182 Sum_probs=8.6
Q ss_pred HHhCCCceEEEecc
Q 008627 501 LVRKGLSCTYTHIN 514 (559)
Q Consensus 501 L~~~GI~vTyI~Ds 514 (559)
+....-+..+++|+
T Consensus 122 ~~~a~ge~i~~~Da 135 (373)
T TIGR03472 122 LPHARHDILVIADS 135 (373)
T ss_pred HHhccCCEEEEECC
Confidence 44555677777764
No 337
>PRK07454 short chain dehydrogenase; Provisional
Probab=24.77 E-value=4.6e+02 Score=25.18 Aligned_cols=74 Identities=19% Similarity=0.126 Sum_probs=42.2
Q ss_pred CCCEEEEecCcHHH-HHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEE-ec----chHHHHhc------
Q 008627 454 DGDVLLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIH------ 521 (559)
Q Consensus 454 dGdvILT~g~SstV-~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI-~D----sAvs~iM~------ 521 (559)
++.+||..|.++-+ ..+.+.+.++| .+|++++ |...+..++...+.+.+-.+.++ +| ..+..++.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G--~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAG--WDLALVA-RSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEe-CCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 45677877776655 45555565555 4788875 44344555666666655555443 23 23333343
Q ss_pred -cccEEEEcc
Q 008627 522 -EVTRVFLGA 530 (559)
Q Consensus 522 -~VdkVlLGA 530 (559)
.+|.||-.|
T Consensus 82 ~~id~lv~~a 91 (241)
T PRK07454 82 GCPDVLINNA 91 (241)
T ss_pred CCCCEEEECC
Confidence 367777655
No 338
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=24.74 E-value=2.7e+02 Score=27.08 Aligned_cols=79 Identities=18% Similarity=0.101 Sum_probs=35.6
Q ss_pred CEEEEecCc--HHHHHHHHHHHHhCCceEEEEcCC-CCCchHHHHHHHHHhCCCceEEEecch-----------HHHHhc
Q 008627 456 DVLLTYGSS--SAVEMILQHAHELGKQFRVVIVDS-RPKHEGKLLLRRLVRKGLSCTYTHINA-----------ISYIIH 521 (559)
Q Consensus 456 dvILT~g~S--stV~~iL~~A~e~Gk~FrViVvES-RP~~EG~~LAk~L~~~GI~vTyI~DsA-----------vs~iM~ 521 (559)
++|+.-..| .|+ .++... .....++|++.+. .....+..+-.-+....-+..+++|+- +.++.+
T Consensus 34 eiivVdd~s~d~t~-~i~~~~-~~~~~~~i~~~~~~~~~G~~~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~ 111 (241)
T cd06427 34 DVKLLLEEDDEETI-AAARAL-RLPSIFRVVVVPPSQPRTKPKACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFAR 111 (241)
T ss_pred EEEEEECCCCchHH-HHHHHh-ccCCCeeEEEecCCCCCchHHHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHh
Confidence 455555555 333 233332 1113466666643 333333333223333333666666542 223333
Q ss_pred c-ccEEEEcceeeecC
Q 008627 522 E-VTRVFLGASSVLSN 536 (559)
Q Consensus 522 ~-VdkVlLGAdaIlaN 536 (559)
. .+.+++|......|
T Consensus 112 ~~~~v~~~~~~~~~~~ 127 (241)
T cd06427 112 LDDKLACVQAPLNYYN 127 (241)
T ss_pred cCCCEEEEeCceEeeC
Confidence 2 66777776654443
No 339
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=24.48 E-value=3.5e+02 Score=28.27 Aligned_cols=67 Identities=19% Similarity=0.302 Sum_probs=45.3
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEc
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLG 529 (559)
.|.+|+.+|+..+-..++..++..| .+|+|++.+|.. .. .+...|.. .+....+...++++|.||..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G--a~V~v~~r~~~~--~~---~~~~~G~~--~~~~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG--ANVTVGARKSAH--LA---RITEMGLS--PFHLSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEECCHHH--HH---HHHHcCCe--eecHHHHHHHhCCCCEEEEC
Confidence 4789999999988788888887766 588888887542 11 22234543 33444556667788888764
No 340
>PLN00175 aminotransferase family protein; Provisional
Probab=24.36 E-value=5.8e+02 Score=27.54 Aligned_cols=96 Identities=13% Similarity=0.167 Sum_probs=48.2
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc---------hHHHHh-ccccE
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYII-HEVTR 525 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds---------Avs~iM-~~Vdk 525 (559)
++++|.|.+..+..++....+.| -+|+|.+ |.+.+...+ +...|+.+.++... .+-..+ +++..
T Consensus 117 ~I~vt~G~~~al~~~~~~l~~~g--d~Vlv~~--P~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~ 190 (413)
T PLN00175 117 EVTVTSGCTEAIAATILGLINPG--DEVILFA--PFYDSYEAT--LSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRA 190 (413)
T ss_pred CEEEeCCHHHHHHHHHHHhCCCC--CEEEEeC--CCchhHHHH--HHHcCCEEEEEECCcccCCCCHHHHHHhcCcCceE
Confidence 57777777776655555443333 3566654 666655332 33467777777531 121112 23444
Q ss_pred EEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 526 VlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
|++- .-=-+.|.++++-=-..|+-+|+.|++.
T Consensus 191 i~i~-~p~NPtG~~~s~~~l~~l~~~a~~~~~~ 222 (413)
T PLN00175 191 ILIN-TPHNPTGKMFTREELELIASLCKENDVL 222 (413)
T ss_pred EEec-CCCCCCCcCCCHHHHHHHHHHHHHcCcE
Confidence 4332 1112233343333233466677777764
No 341
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=24.36 E-value=3.9e+02 Score=27.74 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=24.3
Q ss_pred CEEEEecCc----------------HHHHHHHHHHHHhCCceEEEEc--CCCCCch
Q 008627 456 DVLLTYGSS----------------SAVEMILQHAHELGKQFRVVIV--DSRPKHE 493 (559)
Q Consensus 456 dvILT~g~S----------------stV~~iL~~A~e~Gk~FrViVv--ESRP~~E 493 (559)
|-|+.-|+| +..+..+..|..-|++|.|+=+ +++|..+
T Consensus 71 daiiIaCf~DPgl~~~Re~~~~PviGi~eAsv~~A~~vgrrfsViTtt~rs~~il~ 126 (230)
T COG4126 71 DAIIIACFSDPGLAAARERAAIPVIGICEASVLAALFVGRRFSVITTTERSRPILE 126 (230)
T ss_pred cEEEEEecCChHHHHHHHHhCCCceehhHHHHHHHHHhcceEEEEecCcccHHHHH
Confidence 667777777 2334445555566899998855 5665543
No 342
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=24.19 E-value=5.5e+02 Score=30.36 Aligned_cols=95 Identities=8% Similarity=0.066 Sum_probs=66.1
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhC-CceEEEEcCCCCCchHH-----HHHHHHHhCCCceEEEe---cchHHHHhcccc
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELG-KQFRVVIVDSRPKHEGK-----LLLRRLVRKGLSCTYTH---INAISYIIHEVT 524 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~G-k~FrViVvESRP~~EG~-----~LAk~L~~~GI~vTyI~---DsAvs~iM~~Vd 524 (559)
...+|+.+|--++...++....+.| ..|+.++.|.-+.+-++ ++|+. ...+|+++.|. +..+-.+++..|
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~-~n~~v~v~~i~~~~~~dl~ev~~~~D 206 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEE-TDDALLVQEIDFAEDQHLHEAFEPAD 206 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHH-hCCCCceEeccCCcchhHHHhhcCCc
Confidence 5678999999998888888888888 46888888877765552 33444 23478888886 566777778899
Q ss_pred EEEEcceeeecCCceecccchHHHHHHHhhCC
Q 008627 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFH 556 (559)
Q Consensus 525 kVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~ 556 (559)
.||.-+|--. .-....+--.|...|
T Consensus 207 iVi~vsDdy~-------~~~Lr~lN~acvkeg 231 (637)
T TIGR03693 207 WVLYVSDNGD-------IDDLHALHAFCKEEG 231 (637)
T ss_pred EEEEECCCCC-------hHHHHHHHHHHHHcC
Confidence 9988776322 223445555555555
No 343
>PRK08064 cystathionine beta-lyase; Provisional
Probab=24.15 E-value=7.2e+02 Score=26.76 Aligned_cols=94 Identities=14% Similarity=0.124 Sum_probs=43.2
Q ss_pred EEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH-HH-HHHHHhCCCceEEEecc---hHHHHhc-cccEEEEcc
Q 008627 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LL-LRRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGA 530 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~-~L-Ak~L~~~GI~vTyI~Ds---Avs~iM~-~VdkVlLGA 530 (559)
.|++-+-+..+..+|. ..+.|. +|++. .|.+.|- .+ ...+...|+.+.++... ++-..+. +...|++ .
T Consensus 72 ~v~~~sG~~ai~~~l~-~l~~Gd--~Vlv~--~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~tklV~l-~ 145 (390)
T PRK08064 72 GFAFASGMAAISTAFL-LLSKGD--HVLIS--EDVYGGTYRMITEVLSRFGIEHTFVDMTNLEEVAQNIKPNTKLFYV-E 145 (390)
T ss_pred eEEECCHHHHHHHHHH-HhCCCC--EEEEc--cCccchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCceEEEE-E
Confidence 3444333344444443 444443 45554 3445432 23 34455678888887643 2333332 3444443 2
Q ss_pred eeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 531 daIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.---..|.+.. -..|+-+|+.++++|
T Consensus 146 ~p~NptG~~~d---l~~I~~la~~~g~~v 171 (390)
T PRK08064 146 TPSNPLLKVTD---IRGVVKLAKAIGCLT 171 (390)
T ss_pred CCCCCCcEecc---HHHHHHHHHHcCCEE
Confidence 21112333321 234566677777653
No 344
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=24.13 E-value=5.4e+02 Score=27.72 Aligned_cols=107 Identities=21% Similarity=0.296 Sum_probs=64.6
Q ss_pred CchHHHHHHHhhhcCCcccChHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcC-chhhhHHHHHHHH
Q 008627 327 TLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCR-PLSVSMGNAIRFL 405 (559)
Q Consensus 327 ~VHPaVl~Lglq~~~~~I~GSnAraiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aR-PtsvsmgNAIrrl 405 (559)
.+-|.|++..-+|. ||.+.|.-++.+|.+- ...=...|+.....|..|= =-.|+|-.-++.+
T Consensus 150 Klg~nIEKSvKDLq---------RctvSL~RYr~~lkee--------~d~S~k~ik~~F~~l~~cL~dREvaLl~EmdkV 212 (302)
T PF07139_consen 150 KLGPNIEKSVKDLQ---------RCTVSLTRYRVVLKEE--------MDSSIKKIKQTFAELQSCLMDREVALLAEMDKV 212 (302)
T ss_pred ccCccHHHHHHHHH---------HHHHHHHhhhhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666655554 8999998888888762 2233344555555566552 1256666667766
Q ss_pred HHHHHhcc-----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 008627 406 KSQIAKIP-----------------ISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRD 454 (559)
Q Consensus 406 k~~I~~l~-----------------~~~s~~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~d 454 (559)
+.+...+. ..+++++ ...|...|..|+.|| .-++.|+.. ..|..|
T Consensus 213 K~EAmeiL~aRqkkAeeLkrltd~A~~MsE~Q-l~ELRadIK~fvs~r--k~de~lg~~-~rf~~d 274 (302)
T PF07139_consen 213 KAEAMEILDARQKKAEELKRLTDRASQMSEEQ-LAELRADIKHFVSER--KYDEELGRA-ARFTCD 274 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHH-HHHHHHHHHHHhhhh--hhHHHHhHh-hhcccC
Confidence 65543321 1344444 345788899999987 467777764 345444
No 345
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=24.08 E-value=7.7e+02 Score=25.03 Aligned_cols=107 Identities=15% Similarity=0.095 Sum_probs=64.4
Q ss_pred HHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCc-eEEE---EcC-C---CCC-----chHH----HHHHHHHhC-
Q 008627 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQ-FRVV---IVD-S---RPK-----HEGK----LLLRRLVRK- 504 (559)
Q Consensus 443 ~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~-FrVi---VvE-S---RP~-----~EG~----~LAk~L~~~- 504 (559)
.+...+.++|.+ ..||..|..++-..++......|.. |.++ ++| | |-. .-|+ .++++|.+.
T Consensus 21 ~~g~~~Q~~L~~-~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~ln 99 (245)
T PRK05690 21 GFDFDGQEKLKA-ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARIN 99 (245)
T ss_pred hcCHHHHHHhcC-CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHC
Confidence 356667777765 6899999987777777777666753 3333 222 1 110 1122 234566654
Q ss_pred -CCceEEEe----cchHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 505 -GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 505 -GI~vTyI~----DsAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.++++.+. ...+..+++++|.||...|..- --+.+.-+|..+++|+
T Consensus 100 p~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~---------~r~~ln~~~~~~~ip~ 150 (245)
T PRK05690 100 PHIAIETINARLDDDELAALIAGHDLVLDCTDNVA---------TRNQLNRACFAAKKPL 150 (245)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHH---------HHHHHHHHHHHhCCEE
Confidence 35554443 2234556789999998887432 2345667788888885
No 346
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]
Probab=24.02 E-value=99 Score=31.80 Aligned_cols=103 Identities=19% Similarity=0.224 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhcccCCCEE-EEecCcHHHHHHHHHHHHh--CCceEEEEcCCCCCchHHHHHHHHHhCCCceEE-----E
Q 008627 440 ADRVIVKHAVTKIRDGDVL-LTYGSSSAVEMILQHAHEL--GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY-----T 511 (559)
Q Consensus 440 A~e~Ia~~Aa~~I~dGdvI-LT~g~SstV~~iL~~A~e~--Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTy-----I 511 (559)
.++.|+..+++.|+||+.| |=+|--+.|-+++..-.+- ...--++-+...|.. |..-+.-+..-+-+|+. +
T Consensus 7 ~~e~ia~r~A~el~dG~~VnlGIGlPtlvan~~~~~~~~~~~seng~Lg~g~~p~~-~~~d~~linaG~~~vt~~pg~~~ 85 (225)
T COG2057 7 EREMIAKRAARELKDGDYVNLGIGLPTLVANYAPEGMNVLLQSENGLLGVGPAPLP-GEEDADLINAGKQPVTALPGASV 85 (225)
T ss_pred hHHHHHHHHHHhccCCCEEEecCCchHHhHhhcccccceEEecCceeEEecCCCCC-CCCCcchhhCCCceeEecCCceE
Confidence 4678888899999999754 4466666666655531100 000112223333322 22222223333456666 6
Q ss_pred ecchHHHHhc---cccEEEEcceeeecCCceeccc
Q 008627 512 HINAISYIIH---EVTRVFLGASSVLSNGTVCSRV 543 (559)
Q Consensus 512 ~DsAvs~iM~---~VdkVlLGAdaIlaNGsVvNKv 543 (559)
.|++.+..|= ++|.-||||--|-.+|.+.|-+
T Consensus 86 f~sa~sf~~irGGhidv~vLGa~QVd~~Gnlanw~ 120 (225)
T COG2057 86 FDSADSFAMIRGGHIDVAVLGAAQVDEYGNLANWM 120 (225)
T ss_pred EchHHHHHHHhCCceEEEEecceeecccCceeeee
Confidence 6788777765 6999999999999999998753
No 347
>cd08770 DAP_dppA_3 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=24.01 E-value=1.2e+02 Score=31.89 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=18.6
Q ss_pred eecCCceecccchHHHHHHHhhCCCCC
Q 008627 533 VLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 533 IlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
|.=||-.++-.|- -|++|.+|||||
T Consensus 126 v~iNG~~~gE~~l--na~~Ag~~gVPV 150 (263)
T cd08770 126 VKINGEIASEFLI--NAYTAAYLGVPV 150 (263)
T ss_pred EEECCEEcCHHHH--HHHHHhhcCCCE
Confidence 4446666666554 678999999997
No 348
>PRK14364 Maf-like protein; Provisional
Probab=23.83 E-value=2.7e+02 Score=27.36 Aligned_cols=69 Identities=22% Similarity=0.255 Sum_probs=42.2
Q ss_pred HHHHHHHHhCCceEEEEc---CCCCCch-HHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceeee-cCCceeccc
Q 008627 469 MILQHAHELGKQFRVVIV---DSRPKHE-GKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL-SNGTVCSRV 543 (559)
Q Consensus 469 ~iL~~A~e~Gk~FrViVv---ESRP~~E-G~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIl-aNGsVvNKv 543 (559)
++|..+ |..|.|+.. |+-...+ -.+++.+|+..+-. ++.. +.-+.++||||.|. -||.++.|-
T Consensus 10 elL~~~---g~~f~v~~~~~dE~~~~~~~p~~~~~~lA~~KA~-------~v~~--~~~~~~vI~aDTvV~~~g~ilgKP 77 (181)
T PRK14364 10 ELLQQL---GLNFEIYSPDIDESVHEGELVHQYVERLAREKAQ-------AVLN--IFPDSVIIAADTSLGLDGQIIGKP 77 (181)
T ss_pred HHHHHC---CCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHH--hCCCCEEEEeCeEEEECCEEecCC
Confidence 445443 888988844 4333222 44667777654211 1111 12367999999955 788899998
Q ss_pred chHHHH
Q 008627 544 GTACVA 549 (559)
Q Consensus 544 GT~~IA 549 (559)
.+..-|
T Consensus 78 ~~~eeA 83 (181)
T PRK14364 78 DSKQHA 83 (181)
T ss_pred CCHHHH
Confidence 887655
No 349
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=23.82 E-value=1.4e+02 Score=26.62 Aligned_cols=75 Identities=19% Similarity=0.110 Sum_probs=43.3
Q ss_pred EEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcce
Q 008627 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGAS 531 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAd 531 (559)
+|...|-++.+-.-|.+...+...|+++.+-++..-.|+.+.........-..+.....-...+.++|.||+..+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~ 75 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALP 75 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SC
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCc
Confidence 467788777775555555555678886665555446677666554422222233333333444488999988643
No 350
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=23.76 E-value=5.3e+02 Score=24.81 Aligned_cols=77 Identities=22% Similarity=0.373 Sum_probs=45.4
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHH-HHHhCCC--ceEEEecchHHHHh---cccc
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLR-RLVRKGL--SCTYTHINAISYII---HEVT 524 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk-~L~~~GI--~vTyI~DsAvs~iM---~~Vd 524 (559)
-+..|++||-+|..+-... +..|...+..-+|+.+|-.|.. .++++ .+...|+ +++++...+..++. ..+|
T Consensus 37 ~~~~~~~vlDlG~GtG~~s-~~~a~~~~~~~~v~avD~~~~~--~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D 113 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVT-VEASLLVGETGKVYAVDKDEKA--INLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFD 113 (198)
T ss_pred CCCCcCEEEEeCCcCCHHH-HHHHHHhCCCCEEEEEECCHHH--HHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCC
Confidence 4678899999987642211 1122222445689999988763 34443 3445564 57777655543322 3589
Q ss_pred EEEEcc
Q 008627 525 RVFLGA 530 (559)
Q Consensus 525 kVlLGA 530 (559)
.||+|.
T Consensus 114 ~V~~~~ 119 (198)
T PRK00377 114 RIFIGG 119 (198)
T ss_pred EEEECC
Confidence 998854
No 351
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=23.69 E-value=5.7e+02 Score=27.88 Aligned_cols=106 Identities=11% Similarity=0.056 Sum_probs=66.1
Q ss_pred HHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCC---------CCc-----hHH----HHHHHHHhC
Q 008627 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR---------PKH-----EGK----LLLRRLVRK 504 (559)
Q Consensus 443 ~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESR---------P~~-----EG~----~LAk~L~~~ 504 (559)
.+...+.++|.+ ..||..|..++=..++......|-. ++.++|.. -.+ -|+ .+++.|.+.
T Consensus 31 ~~g~~~q~~L~~-~~VlviG~GGlGs~va~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~ 108 (392)
T PRK07878 31 DVGVDGQKRLKN-ARVLVIGAGGLGSPTLLYLAAAGVG-TLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEI 108 (392)
T ss_pred hcCHHHHHHHhc-CCEEEECCCHHHHHHHHHHHHcCCC-eEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHh
Confidence 366667777765 5799999998777777777666754 55555421 111 122 234556654
Q ss_pred C--CceEEEe----cchHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 505 G--LSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 505 G--I~vTyI~----DsAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
. +.++.+. ...+..+++++|.||.+.|.+. --+.+.-+|..++||+
T Consensus 109 np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~---------~r~~ln~~~~~~~~p~ 160 (392)
T PRK07878 109 NPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFA---------TRYLVNDAAVLAGKPY 160 (392)
T ss_pred CCCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHH---------HHHHHHHHHHHcCCCE
Confidence 4 5554443 1234456888999988876542 2345677888889985
No 352
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=23.66 E-value=2.1e+02 Score=29.19 Aligned_cols=51 Identities=12% Similarity=0.162 Sum_probs=32.7
Q ss_pred HHHHHHHhCCceEEEEcCCCCCchH--HHHHHHHHhCCCceEEEe-cchHHHHhc
Q 008627 470 ILQHAHELGKQFRVVIVDSRPKHEG--KLLLRRLVRKGLSCTYTH-INAISYIIH 521 (559)
Q Consensus 470 iL~~A~e~Gk~FrViVvESRP~~EG--~~LAk~L~~~GI~vTyI~-DsAvs~iM~ 521 (559)
.|....++|+. -|+++..-|.+-| ..+++.|.+.||++++|+ .+++.++..
T Consensus 72 ~i~~~~~~g~~-Vv~L~sGDP~~yg~~~~l~~~l~~~~i~veiiPGISS~~aaaA 125 (257)
T PRK15473 72 LMEAGVKAGKT-VVRLQTGDVSLYGSIREQGEELTKRGIDFQVVPGVSSFLGAAA 125 (257)
T ss_pred HHHHHHHCCCe-EEEEeCcCchhhhhHHHHHHHHHHCCCCEEEeCChhHHHHHHH
Confidence 34444444554 3444467776654 467888888888888888 566666655
No 353
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed
Probab=23.60 E-value=3.4e+02 Score=27.05 Aligned_cols=45 Identities=22% Similarity=0.130 Sum_probs=28.6
Q ss_pred HhCCceEEEEcCCCCCch--HHHHHHHHHhCCCceEEEe-cchHHHHhc
Q 008627 476 ELGKQFRVVIVDSRPKHE--GKLLLRRLVRKGLSCTYTH-INAISYIIH 521 (559)
Q Consensus 476 e~Gk~FrViVvESRP~~E--G~~LAk~L~~~GI~vTyI~-DsAvs~iM~ 521 (559)
.+|++ -|+++-.-|.+- +..+++.|.+.|+++.+|+ .+++.++..
T Consensus 78 ~~g~~-V~~l~~GDP~~ys~~~~l~~~l~~~~~~veviPGISS~~aaaa 125 (249)
T PRK06136 78 RKGKV-VVRLKGGDPFVFGRGGEELEALEAAGIPYEVVPGITAAIAAAA 125 (249)
T ss_pred HCCCe-EEEEeCCCchhhhcHHHHHHHHHHCCCCEEEEcCccHHHHHHH
Confidence 34553 233456677654 4456777777788888887 566666655
No 354
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=23.59 E-value=2.7e+02 Score=26.59 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=37.1
Q ss_pred EEEecCcHHHHHHHHHHHH----hCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecch
Q 008627 458 LLTYGSSSAVEMILQHAHE----LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA 515 (559)
Q Consensus 458 ILT~g~SstV~~iL~~A~e----~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsA 515 (559)
++.+.....|..++....+ .-+..+++++ |...++.|.+.|+.+.++....
T Consensus 176 ~iiftS~~~v~~f~~~~~~~~~~~~~~~~~~ai-------g~~t~~~l~~~g~~~~~~~~~~ 230 (239)
T cd06578 176 AVLFTSPSTVRNLLELLGKEGRALLKNVKIAAI-------GPRTAEALRELGLKVVIVAESP 230 (239)
T ss_pred EEEEeCHHHHHHHHHHHhhhhhhhhcCCeEEEE-------CHHHHHHHHHcCCCceeeecCC
Confidence 5556666777777776643 2245666766 8899999999999988887654
No 355
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=23.59 E-value=5e+02 Score=26.09 Aligned_cols=75 Identities=20% Similarity=0.287 Sum_probs=49.5
Q ss_pred cccCCCEEEEecCc-HHHHHHHHHHHHhCCceEEEEcCCCCCchHHHH-HHHHHhCCCceEEEecchHHHHhc---cccE
Q 008627 451 KIRDGDVLLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIH---EVTR 525 (559)
Q Consensus 451 ~I~dGdvILT~g~S-stV~~iL~~A~e~Gk~FrViVvESRP~~EG~~L-Ak~L~~~GI~vTyI~DsAvs~iM~---~Vdk 525 (559)
-+++|++++.+|.- +.|- ++-| ..+..-+||.+|..+. ..++ -+.+.+.|++-..+...-...+++ +.|.
T Consensus 31 ~~~~g~~l~DIGaGtGsi~--iE~a-~~~p~~~v~AIe~~~~--a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~da 105 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSIT--IEWA-LAGPSGRVIAIERDEE--ALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDA 105 (187)
T ss_pred CCCCCCEEEEeCCCccHHH--HHHH-HhCCCceEEEEecCHH--HHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCE
Confidence 47889999999763 4442 2222 3367789999998654 4455 466778888755555544555544 4789
Q ss_pred EEEcc
Q 008627 526 VFLGA 530 (559)
Q Consensus 526 VlLGA 530 (559)
+|+|-
T Consensus 106 iFIGG 110 (187)
T COG2242 106 IFIGG 110 (187)
T ss_pred EEECC
Confidence 99884
No 356
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=23.46 E-value=4e+02 Score=25.22 Aligned_cols=15 Identities=7% Similarity=-0.102 Sum_probs=7.4
Q ss_pred ccEEEEcceeeecCC
Q 008627 523 VTRVFLGASSVLSNG 537 (559)
Q Consensus 523 VdkVlLGAdaIlaNG 537 (559)
-+..++|......++
T Consensus 105 ~~v~~v~~~~~~~~~ 119 (235)
T cd06434 105 PKVGGVGTNQRILRP 119 (235)
T ss_pred CCEeEEcCceEeecC
Confidence 344555555554444
No 357
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=23.46 E-value=7.4e+02 Score=24.59 Aligned_cols=33 Identities=3% Similarity=-0.044 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCceEEEec---chHHHHhccccEEEE
Q 008627 496 LLLRRLVRKGLSCTYTHI---NAISYIIHEVTRVFL 528 (559)
Q Consensus 496 ~LAk~L~~~GI~vTyI~D---sAvs~iM~~VdkVlL 528 (559)
++++.+.+.|+++..|+- +-+..++..+|.+|.
T Consensus 127 ~a~~~Ak~~G~~vI~IT~~~~s~l~~l~~~~D~~i~ 162 (196)
T PRK10886 127 KAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIR 162 (196)
T ss_pred HHHHHHHHCCCEEEEEeCCCCChhhhccccCCEEEE
Confidence 346777778888888874 444444334566653
No 358
>PRK09148 aminotransferase; Validated
Probab=23.37 E-value=4.3e+02 Score=28.29 Aligned_cols=100 Identities=13% Similarity=0.039 Sum_probs=54.6
Q ss_pred ccCC-CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc-------hHHHHh---
Q 008627 452 IRDG-DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------AISYII--- 520 (559)
Q Consensus 452 I~dG-dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds-------Avs~iM--- 520 (559)
+... ++++|.|.+..+..++....+.|. +|++. .|.+.+....- ...|+.+..+... .+-..+
T Consensus 89 ~~~~~~I~it~G~~~al~~~~~~l~~~gd--~Vl~~--~P~y~~~~~~~--~~~g~~v~~v~~~~~~~~~~~l~~~~~~~ 162 (405)
T PRK09148 89 LNPDTQVVATLGSKEGFANMAQAITAPGD--VILCP--NPSYPIHAFGF--IMAGGVIRSVPAEPDEEFFPALERAVRHS 162 (405)
T ss_pred CCCCCcEEEcCChHHHHHHHHHHhcCCCC--EEEEc--CCCCcccHHHH--HhcCCEEEEEeCCCCCCCccCHHHHHhhc
Confidence 4444 688999988877666655544443 44443 47777654432 3468888777521 122222
Q ss_pred -ccccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 521 -HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 521 -~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
.+...|++-- -=-..|.+++.-=-..|+-+|+.|++.
T Consensus 163 ~~~~~~v~l~~-P~NPtG~~~s~~~l~~l~~~a~~~~~~ 200 (405)
T PRK09148 163 IPKPIALIVNY-PSNPTAYVADLDFYKDVVAFAKKHDII 200 (405)
T ss_pred cccceEEEEeC-CCCCCCcCCCHHHHHHHHHHHHHcCeE
Confidence 2334444321 011336666654445666678887764
No 359
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=23.32 E-value=6.7e+02 Score=26.64 Aligned_cols=90 Identities=16% Similarity=0.114 Sum_probs=51.9
Q ss_pred HHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHH--hCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecch-----
Q 008627 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA----- 515 (559)
Q Consensus 443 ~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e--~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsA----- 515 (559)
..+++..+.|++|+ ++-.+|..|+..++.+... ..+..+|+-+=.-....... ..+|. .+..+.+++..+
T Consensus 104 ~aA~~L~~~l~~~~-~IGvswG~Tl~~~~~~l~~~~~~~~~~vV~l~Gg~~~~~~~-~~~~~-~~~~~~~l~aP~~v~s~ 180 (318)
T PRK15418 104 GAAHMLMSLLQPQQ-LLAVGFGEATMNTLQHLSGFISSQQIRLVTLSGGVGPYMTG-IGQLD-AACSVSIIPAPLRASSA 180 (318)
T ss_pred HHHHHHHHhcCCCC-EEEEcchHHHHHHHHhccccCCCCCCEEEEcCCCCCcchhh-HHHHh-ccCCeEEeccCeecCCH
Confidence 34445556678887 5667999999888866542 23445555443322211111 23443 345566665443
Q ss_pred -----------H---HHHhccccEEEEcceeeec
Q 008627 516 -----------I---SYIIHEVTRVFLGASSVLS 535 (559)
Q Consensus 516 -----------v---s~iM~~VdkVlLGAdaIla 535 (559)
+ ...++++|.+|+|.-.+..
T Consensus 181 e~~~~l~~e~~i~~vl~~~~~~Dial~GIG~~~~ 214 (318)
T PRK15418 181 EIARTLRNENSVRDVMLAAQAADVAIVGIGAVNQ 214 (318)
T ss_pred HHHHHHHhChHHHHHHHHHHhCCEEEEEecCCCC
Confidence 2 2334479999999888775
No 360
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.16 E-value=5.2e+02 Score=28.10 Aligned_cols=88 Identities=13% Similarity=0.020 Sum_probs=52.1
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHh--CCCceEEEecchHHHHhccccEEEEccee
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR--KGLSCTYTHINAISYIIHEVTRVFLGASS 532 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~--~GI~vTyI~DsAvs~iM~~VdkVlLGAda 532 (559)
+.+|+.+|..++=..+.+.+.+.| ..|++.|..+..+- ..+|.+ .||.+.+-... .....+.|.||+....
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g--~~v~~~d~~~~~~~---~~~l~~~~~gi~~~~g~~~--~~~~~~~d~vv~spgi 77 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNG--AEVAAYDAELKPER---VAQIGKMFDGLVFYTGRLK--DALDNGFDILALSPGI 77 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCCCchh---HHHHhhccCCcEEEeCCCC--HHHHhCCCEEEECCCC
Confidence 467888888765555555555545 67888888776532 234554 47765543322 2244678888776522
Q ss_pred eecCCceecccchHHHHHHHhhCCCCC
Q 008627 533 VLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 533 IlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
=. +...-..|+++++||
T Consensus 78 ~~----------~~p~~~~a~~~~i~v 94 (445)
T PRK04308 78 SE----------RQPDIEAFKQNGGRV 94 (445)
T ss_pred CC----------CCHHHHHHHHcCCcE
Confidence 11 234556667777774
No 361
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=23.14 E-value=3.8e+02 Score=28.22 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=27.0
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCC
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP 490 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP 490 (559)
.+..|++||++|...+-..++..|+..| .+||+++..+
T Consensus 180 ~~~~g~~VlV~G~G~vG~~avq~Ak~~G--a~vi~~~~~~ 217 (360)
T PLN02586 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISSSS 217 (360)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCc
Confidence 3567999999998666566667776655 4677776554
No 362
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=23.03 E-value=3.6e+02 Score=26.05 Aligned_cols=35 Identities=26% Similarity=0.229 Sum_probs=17.4
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCC
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR 489 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESR 489 (559)
.|..|+..|+|..|-.-|.....+ +...|.++.++
T Consensus 35 ~Gk~v~VvGrs~~VG~Pla~lL~~-~~atVt~~h~~ 69 (160)
T PF02882_consen 35 EGKKVVVVGRSNIVGKPLAMLLLN-KGATVTICHSK 69 (160)
T ss_dssp TT-EEEEE-TTTTTHHHHHHHHHH-TT-EEEEE-TT
T ss_pred CCCEEEEECCcCCCChHHHHHHHh-CCCeEEeccCC
Confidence 456666666666665555544432 35566666554
No 363
>PRK08363 alanine aminotransferase; Validated
Probab=23.00 E-value=3.4e+02 Score=28.75 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=22.8
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHH
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL 496 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~ 496 (559)
+...++++|.|.+..+..++....+.| -+|++.+ |.+.+..
T Consensus 91 ~~~~~i~it~G~~~al~~~~~~~~~~g--d~Vl~~~--p~y~~~~ 131 (398)
T PRK08363 91 ITPDDVRVTAAVTEALQLIFGALLDPG--DEILIPG--PSYPPYT 131 (398)
T ss_pred CChhhEEEeCCHHHHHHHHHHHhCCCC--CEEEEcC--CCCcchH
Confidence 444567777777776665555443333 3455543 5555543
No 364
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=22.91 E-value=7.8e+02 Score=26.09 Aligned_cols=95 Identities=14% Similarity=0.032 Sum_probs=51.5
Q ss_pred EEEecCcHHHHHHHHHH--HHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec----------chHHHHhc---c
Q 008627 458 LLTYGSSSAVEMILQHA--HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH---E 522 (559)
Q Consensus 458 ILT~g~SstV~~iL~~A--~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D----------sAvs~iM~---~ 522 (559)
|+|.|.+..+..++... .+.|. + +++++ |.+.+...+-+ ..|+++..+.. .++-..+. .
T Consensus 98 ~iT~Ga~~al~~~~~~l~~~~pGd--~-Vlv~~-P~y~~~~~~~~--~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~ 171 (396)
T PRK09257 98 VQTPGGTGALRVGADFLKRAFPDA--K-VWVSD-PTWPNHRAIFE--AAGLEVKTYPYYDAATKGLDFDAMLADLSQAPA 171 (396)
T ss_pred EecCCccHHHHHHHHHHHHhCCCC--e-EEECC-CCcccHHHHHH--HcCCcEEEEeccccccCccCHHHHHHHHHhCCC
Confidence 78888888776555332 13343 3 44444 77766644333 36677666541 12222222 1
Q ss_pred ccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 523 VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
.+++++=..-=-+.|.++++-=-..|+-+|++|++.
T Consensus 172 ~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ 207 (396)
T PRK09257 172 GDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLI 207 (396)
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcE
Confidence 245555444444555566555566777778888764
No 365
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=22.88 E-value=3.3e+02 Score=25.00 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=29.6
Q ss_pred hhccCCCCCchHHHHHHHhh-hcCCcccChHHHHHHHHHHHHHH
Q 008627 319 QSKFFQLDTLHPAVYKVGLQ-YLSGDICGGNARCIAMLQAFQEA 361 (559)
Q Consensus 319 ~~~~~~~~~VHPaVl~Lglq-~~~~~I~GSnAraiA~L~aLk~v 361 (559)
|.+||+...+.---++=|++ +-.+.+.=++.+..++|+|.++|
T Consensus 12 ye~~F~~~~iD~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRv 55 (103)
T cd00923 12 YETYFNRPDIDGWELRRGLNNLFGYDLVPEPKVIEAALRACRRV 55 (103)
T ss_pred HHHHhCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHh
Confidence 44566655555555555554 66777888888889999988764
No 366
>PRK08557 hypothetical protein; Provisional
Probab=22.81 E-value=1e+03 Score=26.60 Aligned_cols=69 Identities=19% Similarity=0.234 Sum_probs=39.8
Q ss_pred HHHHHHHhcccCCCEEEEecCc----HHHHHHHHHHHHhCCceEEEEcCCCCC-chHHHHHHHHHh-CCCceEEEec
Q 008627 443 VIVKHAVTKIRDGDVLLTYGSS----SAVEMILQHAHELGKQFRVVIVDSRPK-HEGKLLLRRLVR-KGLSCTYTHI 513 (559)
Q Consensus 443 ~Ia~~Aa~~I~dGdvILT~g~S----stV~~iL~~A~e~Gk~FrViVvESRP~-~EG~~LAk~L~~-~GI~vTyI~D 513 (559)
.+.+.+.+...++...++.++| |+|...| +.+.+..+.|+.+|+.=. -|-.++++++.+ .|+++..+..
T Consensus 168 ~~i~~~~~~~~~~~~~i~vsfSGGKDS~vlL~L--~~~~~~~i~vvfvDTG~efpET~e~ve~v~~~ygl~i~v~~~ 242 (417)
T PRK08557 168 SILKDYIEKYKNKGYAINASFSGGKDSSVSTLL--AKEVIPDLEVIFIDTGLEYPETINYVKDFAKKYDLNLDTLDG 242 (417)
T ss_pred HHHHHHHHHcCCCCcEEEEEcCCcHHHHHHHHH--HHHhCCCCEEEEEECCCCCHHHHHHHHHHHHHhCCCEEEEec
Confidence 3444444555543344455554 5554333 233356799999998533 245566777765 5898877653
No 367
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=22.70 E-value=5.6e+02 Score=27.60 Aligned_cols=95 Identities=14% Similarity=0.099 Sum_probs=44.3
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchH-HHHHHHHHh-CCCceEEEec---chHHHHhc-cccEEEEc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLLRRLVR-KGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG-~~LAk~L~~-~GI~vTyI~D---sAvs~iM~-~VdkVlLG 529 (559)
++++|-|.+..+..++....+.|. +|++ ..|.+.| ..+...+.. .|+.+.++.. ..+...+. +...|++-
T Consensus 68 ~v~~~~gg~~Ai~~~l~all~~GD--~Vl~--~~p~y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~ 143 (382)
T TIGR02080 68 GAVVTNTGMSAIHLVTTALLGPDD--LLVA--PHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIE 143 (382)
T ss_pred cEEEEcCHHHHHHHHHHHHcCCCC--EEEE--cCCCcHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEE
Confidence 445555555555545544433332 3443 3355554 344444433 3577776632 22333332 34444432
Q ss_pred ceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
.---..|.++. -..|+-+|+.+++.
T Consensus 144 -~p~NPtG~~~d---l~~I~~la~~~g~~ 168 (382)
T TIGR02080 144 -TPSNPLLRVVD---IAKICHLAKAVGAV 168 (382)
T ss_pred -CCCCCCCEecC---HHHHHHHHHHcCCE
Confidence 12223354443 23566667777765
No 368
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=22.69 E-value=5.8e+02 Score=24.13 Aligned_cols=75 Identities=19% Similarity=0.195 Sum_probs=43.1
Q ss_pred CCEEEEecCcHHH-HHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHh-------c
Q 008627 455 GDVLLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYII-------H 521 (559)
Q Consensus 455 GdvILT~g~SstV-~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM-------~ 521 (559)
+.+||..|-|+-+ ..+.+.+.++| .+|+++-.++...-..+..++...+..+.++. | ..+..++ .
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~G--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQG--ANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFG 82 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4567777777655 45555555554 56776666555444455666666665555553 2 2222222 2
Q ss_pred cccEEEEcce
Q 008627 522 EVTRVFLGAS 531 (559)
Q Consensus 522 ~VdkVlLGAd 531 (559)
.+|.||..|-
T Consensus 83 ~id~vi~~ag 92 (248)
T PRK05557 83 GVDILVNNAG 92 (248)
T ss_pred CCCEEEECCC
Confidence 5788887764
No 369
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=22.68 E-value=2.9e+02 Score=26.33 Aligned_cols=47 Identities=28% Similarity=0.386 Sum_probs=31.9
Q ss_pred HHHhCCceEEEEcCCCCCch--HHHHHHHHHh--CCCceEEEe-cchHHHHhc
Q 008627 474 AHELGKQFRVVIVDSRPKHE--GKLLLRRLVR--KGLSCTYTH-INAISYIIH 521 (559)
Q Consensus 474 A~e~Gk~FrViVvESRP~~E--G~~LAk~L~~--~GI~vTyI~-DsAvs~iM~ 521 (559)
...+|+. -|+++-.-|.+- |..+++.|.+ .||++.+|+ .+++.+++.
T Consensus 72 ~~~~g~~-V~~l~~GDP~~~~~~~~l~~~l~~~~~gi~v~iiPGiSs~~~a~a 123 (210)
T PF00590_consen 72 AAKEGKD-VVVLVSGDPLFFSTGSYLVRALRAEERGIEVEIIPGISSFQAAAA 123 (210)
T ss_dssp HHHTTSE-EEEEESBSTTSSSSHHHHHHHHHHHHTTCEEEEE--TTHHHHHHH
T ss_pred HHhccCC-EEEeCCCCCCcccHHHHHHHHHHhhcCCCceEEEecCcHHHHHHH
Confidence 3344555 444557778764 5577888888 899999998 577777765
No 370
>PRK06348 aspartate aminotransferase; Provisional
Probab=22.64 E-value=4.8e+02 Score=27.55 Aligned_cols=100 Identities=17% Similarity=0.202 Sum_probs=50.8
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe---c-------chHHHHhc
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH---I-------NAISYIIH 521 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~---D-------sAvs~iM~ 521 (559)
+...++++|.|.+..+..++......|. +|+|. .|.+.+...+-+ ..|..+..+. + ..+-..+.
T Consensus 87 ~~~~~i~it~G~~~al~~~~~~~~~~gd--~vlv~--~p~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~~~ 160 (384)
T PRK06348 87 FKRNEIMATVGACHGMYLALQSILDPGD--EVIIH--EPYFTPYKDQIE--MVGGKPIILETYEEDGFQINVKKLEALIT 160 (384)
T ss_pred CChhhEEEcCChHHHHHHHHHHhcCCCC--EEEEe--CCCCcchHHHHH--HcCCEEEEecCCcCcCCcCCHHHHHHhhC
Confidence 4556788888888777666665544443 55553 377666544332 2455555543 1 12222232
Q ss_pred -cccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 522 -~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
++..|++- .-=-..|.+++.-==..++-+|+++++.
T Consensus 161 ~~~~~v~l~-~p~NPtG~~~s~~~~~~l~~~a~~~~~~ 197 (384)
T PRK06348 161 SKTKAIILN-SPNNPTGAVFSKETLEEIAKIAIEYDLF 197 (384)
T ss_pred cCccEEEEe-CCCCCCCcCCCHHHHHHHHHHHHHCCeE
Confidence 34455442 1111224444333234566677777764
No 371
>PTZ00357 methyltransferase; Provisional
Probab=22.60 E-value=8.2e+02 Score=29.86 Aligned_cols=63 Identities=13% Similarity=0.166 Sum_probs=42.6
Q ss_pred EEEEe--cCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHH--hC-------CCceEEEecchHHHH
Q 008627 457 VLLTY--GSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLV--RK-------GLSCTYTHINAISYI 519 (559)
Q Consensus 457 vILT~--g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~--~~-------GI~vTyI~DsAvs~i 519 (559)
+|++. |+..+|..+|..+.+.|.+++||++|=.|..-=.-+.+.-. .- |-.|++|...+=.+-
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~ 776 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIA 776 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccc
Confidence 46666 56789999999999999999999999886642121111111 11 556899886655553
No 372
>PRK04694 Maf-like protein; Reviewed
Probab=22.56 E-value=3e+02 Score=27.23 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=46.9
Q ss_pred EEecCcHHHH-HHHHHHHHhCCceEEEEc---CCCCCch-HHHHHHHHHhCCCceEEEecchHHHHhc--cccEEEEcce
Q 008627 459 LTYGSSSAVE-MILQHAHELGKQFRVVIV---DSRPKHE-GKLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGAS 531 (559)
Q Consensus 459 LT~g~SstV~-~iL~~A~e~Gk~FrViVv---ESRP~~E-G~~LAk~L~~~GI~vTyI~DsAvs~iM~--~VdkVlLGAd 531 (559)
|.++.+|--. ++|..+ |..|.|+.. |+....+ -..++.+|+...-. ++...+. .-+.++||||
T Consensus 2 lILAS~SprR~elL~~~---g~~f~~~~~~idE~~~~~~~p~~~v~~lA~~KA~-------~v~~~~~~~~~~~lvI~aD 71 (190)
T PRK04694 2 LYLASRSPRRRELLQRL---DVPFQTLQLDVPEVRAADESPDHYVQRVALEKAH-------AGLALVQAADADAIVLGSD 71 (190)
T ss_pred EEEcCCCHHHHHHHHHC---CCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHHhhccCCCCEEEEeC
Confidence 3445555444 444444 788998854 4432222 34566666653221 1111111 2367999999
Q ss_pred eee-cCCceecccchHHHH
Q 008627 532 SVL-SNGTVCSRVGTACVA 549 (559)
Q Consensus 532 aIl-aNGsVvNKvGT~~IA 549 (559)
.|. -||.++.|-.+..-|
T Consensus 72 Tvv~~~g~ilgKP~~~~eA 90 (190)
T PRK04694 72 TEVVLGERVFGKPVDVDDA 90 (190)
T ss_pred eEEEECCEEecCCCCHHHH
Confidence 976 588899988776655
No 373
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=22.54 E-value=1.7e+02 Score=25.73 Aligned_cols=43 Identities=23% Similarity=0.040 Sum_probs=29.8
Q ss_pred CCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcc
Q 008627 488 SRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (559)
Q Consensus 488 SRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGA 530 (559)
++-..+=.++++.+.+.|++|..|+++.-+.+-+.+|.+|.-.
T Consensus 57 sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~ 99 (128)
T cd05014 57 SGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDLP 99 (128)
T ss_pred CCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCCEEEECC
Confidence 3333344455666777788888888877777777788887654
No 374
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=22.53 E-value=2.7e+02 Score=27.36 Aligned_cols=52 Identities=17% Similarity=0.128 Sum_probs=34.2
Q ss_pred HHHHHHHHhCCceEEEEcCCCCCch--HHHHHHHHHhCCCceEEEe-cchHHHHhc
Q 008627 469 MILQHAHELGKQFRVVIVDSRPKHE--GKLLLRRLVRKGLSCTYTH-INAISYIIH 521 (559)
Q Consensus 469 ~iL~~A~e~Gk~FrViVvESRP~~E--G~~LAk~L~~~GI~vTyI~-DsAvs~iM~ 521 (559)
+.|....++|++ -|+++-.-|..- |..+.+.|.+.|+++++|+ .+++.+++.
T Consensus 62 ~~i~~~~~~g~~-V~~L~~GDP~~~~~~~~l~~~~~~~g~~veviPGiSS~~aa~a 116 (229)
T TIGR01465 62 DIMSDAHREGKL-VVRLHTGDPSIYGAIAEQMQLLEALGIPYEVVPGVSSFFAAAA 116 (229)
T ss_pred HHHHHHHHCCCe-EEEEeCcCccccccHHHHHHHHHHCCCCEEEECChhHHHHHHH
Confidence 344444444553 344557778554 5567788888899999998 677777665
No 375
>PRK12452 cardiolipin synthetase; Reviewed
Probab=22.50 E-value=3.5e+02 Score=30.67 Aligned_cols=48 Identities=13% Similarity=0.087 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 008627 465 SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 465 stV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~ 512 (559)
..+...|.++.++|.+.+|++.+-.-......+.++|.+.||+|....
T Consensus 180 ~~i~~aL~~aa~rGV~VRiL~D~~Gs~~~~~~~~~~L~~aGi~v~~f~ 227 (509)
T PRK12452 180 TKVRDALIKKAKDGVIVRFLYDGLGSNTLRRRFLQPMKEAGIEIVEFD 227 (509)
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHhCCeEEEEec
Confidence 345667777777788888777643222334567888999999887543
No 376
>PRK00648 Maf-like protein; Reviewed
Probab=22.47 E-value=3.4e+02 Score=26.84 Aligned_cols=79 Identities=20% Similarity=0.157 Sum_probs=46.0
Q ss_pred EecCcHHH-HHHHHHHHHhCCceEEE-E---cCCC-CCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceee
Q 008627 460 TYGSSSAV-EMILQHAHELGKQFRVV-I---VDSR-PKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (559)
Q Consensus 460 T~g~SstV-~~iL~~A~e~Gk~FrVi-V---vESR-P~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaI 533 (559)
.++.+|-- ..+|..+ |..|.|+ . -|+. +...-.+++.+|+..+-. ++..-+ .=+.++||||.|
T Consensus 6 ILAS~SprR~elL~~~---g~~f~v~~~~~~dE~~~~~~~p~~~v~~lA~~Ka~-------~v~~~~-~~~~~VI~aDTv 74 (191)
T PRK00648 6 ILASSSPRRKEILEGF---RIPFEVVPSPFVEESYPYSLDPEEITLELARLKAE-------AVRSDL-FPDELIITADTI 74 (191)
T ss_pred EEeCCCHHHHHHHHHC---CCCeEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHhh-CCCCEEEEeCeE
Confidence 34444444 3455544 8899988 3 2332 223345667777654221 111101 236799999996
Q ss_pred e-cCCceecccchHHHH
Q 008627 534 L-SNGTVCSRVGTACVA 549 (559)
Q Consensus 534 l-aNGsVvNKvGT~~IA 549 (559)
. -||.++.|-.+..-|
T Consensus 75 V~~~g~ilgKP~~~~eA 91 (191)
T PRK00648 75 VWYDGKVLGKPKDEEEA 91 (191)
T ss_pred EEECCEEeCCCCCHHHH
Confidence 5 788899998877655
No 377
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=22.47 E-value=1.8e+02 Score=30.87 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=51.2
Q ss_pred EEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCc--hHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceeeec
Q 008627 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKH--EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (559)
Q Consensus 458 ILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~--EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIla 535 (559)
||..|..+-+-.-|..... ..+.|+.++.+... ....+.+-+.+..-++.+ ++++|. .||+.- .--.
T Consensus 3 iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~Ditd~~~v~~~i~~~~PDvVI---n~AAyt--~vD~aE----~~~e 71 (281)
T COG1091 3 ILITGANGQLGTELRRALP--GEFEVIATDRAELDITDPDAVLEVIRETRPDVVI---NAAAYT--AVDKAE----SEPE 71 (281)
T ss_pred EEEEcCCChHHHHHHHHhC--CCceEEeccCccccccChHHHHHHHHhhCCCEEE---ECcccc--cccccc----CCHH
Confidence 8888888888777777653 56888888765511 111222333322222111 112211 233321 1111
Q ss_pred CCceecccchHHHHHHHhhCCCCC
Q 008627 536 NGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 536 NGsVvNKvGT~~IALaAk~~~VPV 559 (559)
--..+|-.|+..||.+|+++|.++
T Consensus 72 ~A~~vNa~~~~~lA~aa~~~ga~l 95 (281)
T COG1091 72 LAFAVNATGAENLARAAAEVGARL 95 (281)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCeE
Confidence 223589999999999999998764
No 378
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=22.37 E-value=6.2e+02 Score=27.29 Aligned_cols=91 Identities=22% Similarity=0.188 Sum_probs=43.0
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH-HHHH-HHHhCCCceEEEec---chHHHHhcc-ccEEEEc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLR-RLVRKGLSCTYTHI---NAISYIIHE-VTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~-~LAk-~L~~~GI~vTyI~D---sAvs~iM~~-VdkVlLG 529 (559)
++++|-+-+..+..+|......|. +|++. .|.+.+- .++. .+...|++++++.. ..+...+.. ...|++-
T Consensus 67 ~~~~~~sG~~Ai~~al~all~~GD--~Vl~~--~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e~l~~~i~~~tklV~le 142 (377)
T TIGR01324 67 GCYLYPSGLAAVTNSILAFVKAGD--HVLMV--DSAYEPTRYFCDIVLKRMGVDITYYDPLIGEDIATLIQPNTKVLFLE 142 (377)
T ss_pred cEEEECcHHHHHHHHHHHhcCCCC--EEEEc--CCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEE
Confidence 455555555555555544433333 45554 3444332 3343 34556777776632 234444433 3333321
Q ss_pred ceeeecCCceecccch----HHHHHHHhhCCCC
Q 008627 530 ASSVLSNGTVCSRVGT----ACVAMVAYGFHIP 558 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT----~~IALaAk~~~VP 558 (559)
++.|..|. ..|+-+|+++|++
T Consensus 143 --------sp~Np~g~~~dl~~I~~la~~~g~~ 167 (377)
T TIGR01324 143 --------APSSITFEIQDIPAIAKAARNPGIV 167 (377)
T ss_pred --------CCCCCCCcHHHHHHHHHHHHHcCCE
Confidence 12233332 2356667777765
No 379
>PRK12361 hypothetical protein; Provisional
Probab=22.35 E-value=3.7e+02 Score=30.42 Aligned_cols=43 Identities=14% Similarity=0.288 Sum_probs=34.1
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHH
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLV 502 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~ 502 (559)
.|+|+..|--+||.+++......+..+-|| |...|=.+|+.|.
T Consensus 298 ~d~Viv~GGDGTl~ev~~~l~~~~~~lgii-----P~GTgNdfAr~L~ 340 (547)
T PRK12361 298 ADIVIACGGDGTVTEVASELVNTDITLGII-----PLGTANALSHALF 340 (547)
T ss_pred CCEEEEECCCcHHHHHHHHHhcCCCCEEEe-----cCCchhHHHHHhc
Confidence 379999999999999998887544445555 8888888998884
No 380
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=22.28 E-value=2.9e+02 Score=26.75 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=21.2
Q ss_pred CCCEEEEecCcHHHHH-HHHHHHHhCCceEEEEcCCC
Q 008627 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSR 489 (559)
Q Consensus 454 dGdvILT~g~SstV~~-iL~~A~e~Gk~FrViVvESR 489 (559)
.|..||..|++.++.. +...+.+.|. +|+++..+
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~--~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNA--TVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCC--EEEEEECC
Confidence 5678888888877655 4444444443 57777654
No 381
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=22.22 E-value=6e+02 Score=25.76 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=35.0
Q ss_pred CCEEEEecCcHHHH---HHHHHHHHh--CCceEE-EEcCCCCCchHHHHHHHHHhCCCc-e-EEEecchHHHHhccccEE
Q 008627 455 GDVLLTYGSSSAVE---MILQHAHEL--GKQFRV-VIVDSRPKHEGKLLLRRLVRKGLS-C-TYTHINAISYIIHEVTRV 526 (559)
Q Consensus 455 GdvILT~g~SstV~---~iL~~A~e~--Gk~FrV-iVvESRP~~EG~~LAk~L~~~GI~-v-TyI~DsAvs~iM~~VdkV 526 (559)
.-+|+.+|.+.-.. .+|..|.+. ....++ +++...+. ..+.+.+.+.|+. + .+. ..-+..+|..+|.+
T Consensus 179 ~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~~~~~~~~~g~~~~---~~l~~~~~~~~l~~~v~~~-~~~~~~~l~~ad~~ 254 (348)
T TIGR01133 179 KPTILVLGGSQGAKILNELVPKALAKLAEKGIQIVHQTGKNDL---EKVKNVYQELGIEAIVTFI-DENMAAAYAAADLV 254 (348)
T ss_pred CeEEEEECCchhHHHHHHHHHHHHHHHhhcCcEEEEECCcchH---HHHHHHHhhCCceEEecCc-ccCHHHHHHhCCEE
Confidence 34677887663322 223333321 122333 34432221 2444445556763 2 233 32678899999988
Q ss_pred EE
Q 008627 527 FL 528 (559)
Q Consensus 527 lL 528 (559)
++
T Consensus 255 v~ 256 (348)
T TIGR01133 255 IS 256 (348)
T ss_pred EE
Confidence 75
No 382
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=22.18 E-value=6.9e+02 Score=23.80 Aligned_cols=72 Identities=21% Similarity=0.191 Sum_probs=40.8
Q ss_pred CCCEEEEecCcHHH-HHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHh-CCCceEEEec---chHHHHhccccEEEE
Q 008627 454 DGDVLLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTHI---NAISYIIHEVTRVFL 528 (559)
Q Consensus 454 dGdvILT~g~SstV-~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~-~GI~vTyI~D---sAvs~iM~~VdkVlL 528 (559)
.+.+||.+|.++-+ ..+...+.+.| .+|+++ +|-......++.++.+ .+..+..+.. ..+...++++|.||.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g--~~V~l~-~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~ 103 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREG--ARVVLV-GRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEE-cCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence 35689999875544 44445555555 377777 4543444555665542 3555554422 333456677886655
No 383
>PRK08175 aminotransferase; Validated
Probab=22.13 E-value=5.9e+02 Score=27.01 Aligned_cols=100 Identities=13% Similarity=0.144 Sum_probs=50.6
Q ss_pred ccCC-CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc-h------HHHHhc--
Q 008627 452 IRDG-DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-A------ISYIIH-- 521 (559)
Q Consensus 452 I~dG-dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds-A------vs~iM~-- 521 (559)
+... .+|+|.|.+..+..++....+.|. +|++. +|.+.+....-. ..|+++.++... . +-..++
T Consensus 88 ~~~~~~i~~t~G~~~~l~~~~~~~~~~gd--~Vlv~--~P~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~~l~~~l~~~ 161 (395)
T PRK08175 88 IDPESEAIVTIGSKEGLAHLMLATLDHGD--TVLVP--NPSYPIHIYGAV--IAGAQVRSVPLVEGVDFFNELERAIRES 161 (395)
T ss_pred CCCCCcEEEccCcHHHHHHHHHHhCCCCC--EEEEc--CCCCcchHHHHH--HcCCeEEEEecccCCCcHHHHHHHHhhc
Confidence 4434 578888877766655554444443 44443 566665444322 367777776421 1 222222
Q ss_pred --cccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 522 --EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 522 --~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
++..|++. .-=-..|.+++.-=-..|+-+|+++|+.
T Consensus 162 ~~~~~~v~i~-~p~NPtG~~~~~~~~~~i~~~a~~~~i~ 199 (395)
T PRK08175 162 YPKPKMMILG-FPSNPTAQCVELEFFEKVVALAKRYDVL 199 (395)
T ss_pred cCCceEEEEe-CCCCCCCCCCCHHHHHHHHHHHHHcCcE
Confidence 23344432 1111234444443335677778888875
No 384
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=22.12 E-value=5.1e+02 Score=28.08 Aligned_cols=83 Identities=17% Similarity=0.174 Sum_probs=51.5
Q ss_pred CCCEEEEecCcH---HHHHHHHHHHHhCC-ceEEEEcCCCCCchHHHHHHHHHhCCC-ceEEEecchHHHHhccccEEEE
Q 008627 454 DGDVLLTYGSSS---AVEMILQHAHELGK-QFRVVIVDSRPKHEGKLLLRRLVRKGL-SCTYTHINAISYIIHEVTRVFL 528 (559)
Q Consensus 454 dGdvILT~g~Ss---tV~~iL~~A~e~Gk-~FrViVvESRP~~EG~~LAk~L~~~GI-~vTyI~DsAvs~iM~~VdkVlL 528 (559)
+--+||+.|-|. .+..++..+..... ++.|+..-..-.+ .++...+.+.|+ .+....|+ +..+|..+|.|
T Consensus 182 ~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~~~~v~~~~G~~~~--~~~~~~~~~~~~~~v~~f~~d-m~~~~~~ADLv-- 256 (357)
T COG0707 182 DKKTILVTGGSQGAKALNDLVPEALAKLANRIQVIHQTGKNDL--EELKSAYNELGVVRVLPFIDD-MAALLAAADLV-- 256 (357)
T ss_pred CCcEEEEECCcchhHHHHHHHHHHHHHhhhCeEEEEEcCcchH--HHHHHHHhhcCcEEEeeHHhh-HHHHHHhccEE--
Confidence 567999999983 44556666554333 4666665443322 244555666674 44444444 77788899987
Q ss_pred cceeeecCCceecccchHHHHHHH
Q 008627 529 GASSVLSNGTVCSRVGTACVAMVA 552 (559)
Q Consensus 529 GAdaIlaNGsVvNKvGT~~IALaA 552 (559)
+.|.|...|+-++
T Consensus 257 -----------IsRaGa~Ti~E~~ 269 (357)
T COG0707 257 -----------ISRAGALTIAELL 269 (357)
T ss_pred -----------EeCCcccHHHHHH
Confidence 5677777776544
No 385
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=22.08 E-value=4.7e+02 Score=28.72 Aligned_cols=102 Identities=18% Similarity=0.088 Sum_probs=59.9
Q ss_pred CCEEEEecCcHHH-HHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-----cchHHHHhccccEEEE
Q 008627 455 GDVLLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-----INAISYIIHEVTRVFL 528 (559)
Q Consensus 455 GdvILT~g~SstV-~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-----DsAvs~iM~~VdkVlL 528 (559)
+.++|+.|-|+-+ ++++....+.+...+|+++|-.|...-- .........-.++++. ...+......+ .|+.
T Consensus 4 ~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~-~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~~-~Vvh 81 (361)
T KOG1430|consen 4 KLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNL-PAELTGFRSGRVTVILGDLLDANSISNAFQGA-VVVH 81 (361)
T ss_pred CCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCcccccc-chhhhcccCCceeEEecchhhhhhhhhhccCc-eEEE
Confidence 4577778777654 6777777777768999999988863100 0011100334555552 23344444455 3333
Q ss_pred cceeeecCCc---------eecccchHHHHHHHhhCCCCC
Q 008627 529 GASSVLSNGT---------VCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 529 GAdaIlaNGs---------VvNKvGT~~IALaAk~~~VPV 559 (559)
=|.... .+. =+|--||..+--+|+..||++
T Consensus 82 ~aa~~~-~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~ 120 (361)
T KOG1430|consen 82 CAASPV-PDFVENDRDLAMRVNVNGTLNVIEACKELGVKR 120 (361)
T ss_pred eccccC-ccccccchhhheeecchhHHHHHHHHHHhCCCE
Confidence 222222 222 357889999999999999874
No 386
>PRK05765 precorrin-3B C17-methyltransferase; Provisional
Probab=21.94 E-value=3.4e+02 Score=27.48 Aligned_cols=58 Identities=16% Similarity=0.170 Sum_probs=38.3
Q ss_pred HHHHhCCceEEEEcCCCCCchH--HHHHHHHHhCCC--ceEEEe-cchHHHHhc-----c-ccEEEEcce
Q 008627 473 HAHELGKQFRVVIVDSRPKHEG--KLLLRRLVRKGL--SCTYTH-INAISYIIH-----E-VTRVFLGAS 531 (559)
Q Consensus 473 ~A~e~Gk~FrViVvESRP~~EG--~~LAk~L~~~GI--~vTyI~-DsAvs~iM~-----~-VdkVlLGAd 531 (559)
...++|+. -|+++..-|..-| ..+.+.|.+.|+ +|.+|+ .+++.+++. - -+.+|++.+
T Consensus 67 ~~~~~g~~-Vv~l~~GDP~i~~~~~~~~~~l~~~~~~~~veviPGiSs~~aa~a~~g~pl~~~~~~~s~~ 135 (246)
T PRK05765 67 EKALEGNI-VALVSSGDPQVYGMAGLVFELISRRKLDVDVEVIPGVTAALAAAARLGSPLSLDFVVISLS 135 (246)
T ss_pred HHHHCCCc-EEEEeCCCchhhhhHHHHHHHHHhcCCCCCEEEeCCHHHHHHHHHHhCCCCcCCcEEEEcC
Confidence 33345654 4556679997754 467888888887 688888 455555554 1 267777765
No 387
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=21.91 E-value=2.3e+02 Score=27.08 Aligned_cols=38 Identities=26% Similarity=0.425 Sum_probs=27.8
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCC
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP 490 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP 490 (559)
.+..|++||.++.+++-..++..|+..| .+|+++++.+
T Consensus 131 ~~~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~ 168 (271)
T cd05188 131 VLKPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSD 168 (271)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCH
Confidence 4578999999999884455555666655 6888888765
No 388
>PRK04296 thymidine kinase; Provisional
Probab=21.75 E-value=3e+02 Score=26.63 Aligned_cols=49 Identities=14% Similarity=0.229 Sum_probs=29.6
Q ss_pred CceEEEEcCCCCCch-H--HHHHHHHHhCCCceEEEecc---------hHHHHhccccEEE
Q 008627 479 KQFRVVIVDSRPKHE-G--KLLLRRLVRKGLSCTYTHIN---------AISYIIHEVTRVF 527 (559)
Q Consensus 479 k~FrViVvESRP~~E-G--~~LAk~L~~~GI~vTyI~Ds---------Avs~iM~~VdkVl 527 (559)
.++.|+|+|.--.+. - .++++.|...|+.|.+.-.. +...++..+|.|+
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~ 137 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVT 137 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEE
Confidence 345666666554442 2 34566667777777776655 6666676666553
No 389
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=21.75 E-value=1.3e+02 Score=32.35 Aligned_cols=49 Identities=27% Similarity=0.358 Sum_probs=32.2
Q ss_pred hcccCCCEEEEecCcHHH-HHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHH
Q 008627 450 TKIRDGDVLLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLV 502 (559)
Q Consensus 450 ~~I~dGdvILT~g~SstV-~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~ 502 (559)
.....|+.||++|.|+-| ..++.-|+..+ |.++++-++ .|+.+|+++|-
T Consensus 153 ~~~~~g~~vLv~ggsggVG~~aiQlAk~~~--~~~v~t~~s--~e~~~l~k~lG 202 (347)
T KOG1198|consen 153 KKLSKGKSVLVLGGSGGVGTAAIQLAKHAG--AIKVVTACS--KEKLELVKKLG 202 (347)
T ss_pred cccCCCCeEEEEeCCcHHHHHHHHHHHhcC--CcEEEEEcc--cchHHHHHHcC
Confidence 357789999999999777 45666677666 555555443 34455555554
No 390
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=21.74 E-value=8.1e+02 Score=26.00 Aligned_cols=93 Identities=13% Similarity=0.235 Sum_probs=40.0
Q ss_pred EEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH-HH-HHHHHhCCCceEEEecc---hHHHHhc-cccEEEEcce
Q 008627 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LL-LRRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGAS 531 (559)
Q Consensus 458 ILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~-~L-Ak~L~~~GI~vTyI~Ds---Avs~iM~-~VdkVlLGAd 531 (559)
|+|-+-+..+..++ .+...|. +|++.+ |.+.+. .+ ...+...|+.+.++... .+-..+. +...|++-
T Consensus 71 ~~~~sG~~ai~~~~-~ll~~Gd--~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklv~le-- 143 (366)
T PRK08247 71 FACSSGMAAIQLVM-SLFRSGD--ELIVSS--DLYGGTYRLFEEHWKKWNVRFVYVNTASLKAIEQAITPNTKAIFIE-- 143 (366)
T ss_pred EEEcCHHHHHHHHH-HHhCCCC--EEEEec--CCcCcHHHHHHHHhhccCceEEEECCCCHHHHHHhcccCceEEEEE--
Confidence 44444444443332 3333332 455433 444443 22 23345567777776532 2222232 33444431
Q ss_pred eeecCCceecccchHHHHHHHhhCCCCC
Q 008627 532 SVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 532 aIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
..|.-+....--..|+-+|+++|+++
T Consensus 144 --~P~NP~~~~~dl~~I~~la~~~g~~l 169 (366)
T PRK08247 144 --TPTNPLMQETDIAAIAKIAKKHGLLL 169 (366)
T ss_pred --CCCCCCCcHHHHHHHHHHHHHcCCEE
Confidence 12211222222344666777777653
No 391
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.72 E-value=5.2e+02 Score=28.66 Aligned_cols=88 Identities=16% Similarity=0.072 Sum_probs=51.9
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceee
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaI 533 (559)
++..|+.+|.-.+-..+.+.+++.|. .|++.|..+.. ..+.|.+.||.+..-... . ..+.++|.||+..- |
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~--~V~~~D~~~~~----~~~~l~~~gi~~~~~~~~-~-~~~~~~d~vV~Spg-i 84 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGC--DVVVADDNETA----RHKLIEVTGVADISTAEA-S-DQLDSFSLVVTSPG-W 84 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCC--EEEEECCChHH----HHHHHHhcCcEEEeCCCc-h-hHhcCCCEEEeCCC-C
Confidence 35578999887776666777776664 89999965431 223345568876542111 1 23457888876542 2
Q ss_pred ecCCceecccchHHHHHHHhhCCCCC
Q 008627 534 LSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 534 laNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
-. +...-..|++.+||+
T Consensus 85 ~~---------~~p~~~~a~~~gi~v 101 (473)
T PRK00141 85 RP---------DSPLLVDAQSQGLEV 101 (473)
T ss_pred CC---------CCHHHHHHHHCCCce
Confidence 11 234555667777764
No 392
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=21.67 E-value=4.7e+02 Score=27.64 Aligned_cols=105 Identities=17% Similarity=0.111 Sum_probs=64.9
Q ss_pred HHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCc--------------hHH----HHHHHHHhC-
Q 008627 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKH--------------EGK----LLLRRLVRK- 504 (559)
Q Consensus 444 Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~--------------EG~----~LAk~L~~~- 504 (559)
+...+.++|.+ ..||..|..++=..+++.....|-+ ++.++|..+.. -|+ .++++|.+.
T Consensus 9 ~G~eaq~kL~~-s~VLIvG~gGLG~EiaKnLalaGVg-~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLN 86 (286)
T cd01491 9 LGHEAMKKLQK-SNVLISGLGGLGVEIAKNLILAGVK-SVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELN 86 (286)
T ss_pred cCHHHHHHHhc-CcEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHC
Confidence 34455556653 6799999998888888887777765 56666654411 132 235566665
Q ss_pred -CCceEEEecchHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 505 -GLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 505 -GI~vTyI~DsAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.++++.+...-...++.+.|.||+..+.+- . -..+.-+|+.++|||
T Consensus 87 p~V~V~~~~~~~~~~~l~~fdvVV~~~~~~~------~---~~~in~~c~~~~ipf 133 (286)
T cd01491 87 PYVPVTVSTGPLTTDELLKFQVVVLTDASLE------D---QLKINEFCHSPGIKF 133 (286)
T ss_pred CCCEEEEEeccCCHHHHhcCCEEEEecCCHH------H---HHHHHHHHHHcCCEE
Confidence 466666654433456778998887755321 1 123445778888885
No 393
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=21.66 E-value=4.4e+02 Score=21.38 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=30.2
Q ss_pred EEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCc----h-HHHHHHHHHhCCCceE
Q 008627 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKH----E-GKLLLRRLVRKGLSCT 509 (559)
Q Consensus 458 ILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~----E-G~~LAk~L~~~GI~vT 509 (559)
|+.+|.+-+-.++-....+.|.+..+|.-..++.. + ...+.+.|.+.||++.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~ 58 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVH 58 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEE
Confidence 66777776666666666666765555444444441 1 3344677878876543
No 394
>PRK14367 Maf-like protein; Provisional
Probab=21.65 E-value=3.3e+02 Score=27.28 Aligned_cols=80 Identities=14% Similarity=0.148 Sum_probs=46.3
Q ss_pred EecCcHHHH-HHHHHHHHhCCceEEEEc---CCCCCc-hHHHHHHHHHhCCCceEEEecchHHHHh-----ccccEEEEc
Q 008627 460 TYGSSSAVE-MILQHAHELGKQFRVVIV---DSRPKH-EGKLLLRRLVRKGLSCTYTHINAISYII-----HEVTRVFLG 529 (559)
Q Consensus 460 T~g~SstV~-~iL~~A~e~Gk~FrViVv---ESRP~~-EG~~LAk~L~~~GI~vTyI~DsAvs~iM-----~~VdkVlLG 529 (559)
.++.+|--. ++|..+ |..|.|+.. |+-... .-.+++.+|+..+-. ++...+ ..-+.++||
T Consensus 5 ILAS~SprR~eLL~~~---Gi~f~v~~~~iDE~~~~~~~p~~~v~~lA~~KA~-------~v~~~~~~~~~~~~~~~vI~ 74 (202)
T PRK14367 5 YLGSNSPRRMEILTQL---GYRVVKLPAGIDETVKAGETPARYVQRMAEEKNR-------TALTLFCETNGTMPDFPLIT 74 (202)
T ss_pred EEeCCCHHHHHHHHHC---CCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHhhccccccCCCCEEEE
Confidence 344554444 444433 888987743 443222 244567777654221 122211 124669999
Q ss_pred ceeee-cCCceecccchHHHH
Q 008627 530 ASSVL-SNGTVCSRVGTACVA 549 (559)
Q Consensus 530 AdaIl-aNGsVvNKvGT~~IA 549 (559)
||.|. -||.++.|-.+..-|
T Consensus 75 aDTvV~~dg~IlgKP~~~eeA 95 (202)
T PRK14367 75 ADTCVVSDGIILGKPRSQAEA 95 (202)
T ss_pred eCcEEEECCEEecCCCCHHHH
Confidence 99966 789999998877655
No 395
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=21.65 E-value=3.8e+02 Score=29.92 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=42.6
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEc
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLG 529 (559)
....|.+|+.+|+...=..+...++..| .+|+|+|..|... .+....|..+. . +..+++.+|.||..
T Consensus 208 ~~l~Gk~VlViG~G~IG~~vA~~lr~~G--a~ViV~d~dp~ra-----~~A~~~G~~v~--~---l~eal~~aDVVI~a 274 (425)
T PRK05476 208 VLIAGKVVVVAGYGDVGKGCAQRLRGLG--ARVIVTEVDPICA-----LQAAMDGFRVM--T---MEEAAELGDIFVTA 274 (425)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCchhh-----HHHHhcCCEec--C---HHHHHhCCCEEEEC
Confidence 3457899999999887777777777655 4899999887542 11122355432 1 23445567777654
No 396
>COG1307 DegV Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.63 E-value=3.6e+02 Score=28.31 Aligned_cols=70 Identities=21% Similarity=0.254 Sum_probs=42.8
Q ss_pred cccCCC-EEEEe----cCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHH----HHHHHhCCCceEEEecchHHHHhc
Q 008627 451 KIRDGD-VLLTY----GSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL----LRRLVRKGLSCTYTHINAISYIIH 521 (559)
Q Consensus 451 ~I~dGd-vILT~----g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~L----Ak~L~~~GI~vTyI~DsAvs~iM~ 521 (559)
+...|+ .|+.+ +-|+|.+. -..|.+....++|.|+||+-...|..+ +.+|.+.|.+..-| ...+..+.+
T Consensus 76 l~~~g~~~vi~i~iSs~LSgty~~-a~~a~~~~~~~~v~viDS~~~s~~~g~~v~~a~~l~~~G~s~~ei-~~~l~~~~~ 153 (282)
T COG1307 76 LLQKGYDEVISIHISSGLSGTYQS-AQLAAELVEGAKVHVIDSKSVSMGLGFLVLEAAELAKAGKSFEEI-LKKLEEIRE 153 (282)
T ss_pred HHhCCCcEEEEEEcCCCccHHHHH-HHHHHHhccCceEEEEcCcchhhHHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHh
Confidence 344543 34443 34678877 455555555589999999987766543 67888888873322 234444444
Q ss_pred c
Q 008627 522 E 522 (559)
Q Consensus 522 ~ 522 (559)
+
T Consensus 154 ~ 154 (282)
T COG1307 154 K 154 (282)
T ss_pred h
Confidence 4
No 397
>PRK00032 Maf-like protein; Reviewed
Probab=21.59 E-value=3.4e+02 Score=26.89 Aligned_cols=79 Identities=23% Similarity=0.293 Sum_probs=45.8
Q ss_pred EecCcHHHH-HHHHHHHHhCCceEEEEc---CCCCC-chHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceeee
Q 008627 460 TYGSSSAVE-MILQHAHELGKQFRVVIV---DSRPK-HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (559)
Q Consensus 460 T~g~SstV~-~iL~~A~e~Gk~FrViVv---ESRP~-~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIl 534 (559)
.++.+|--. ++|..+ |..|.|+.. |+... ..-.+++.+|+..+-. ++..-+ .-+.++||||.|.
T Consensus 5 ILAS~SprR~elL~~~---g~~f~v~~~~idE~~~~~~~p~~~v~~lA~~KA~-------~v~~~~-~~~~~vI~aDTvV 73 (190)
T PRK00032 5 YLASGSPRRRELLTQL---GVPFEVLVPGIEEQRQPGESAQQYVERLARDKAQ-------AGVALA-PQDLPVLGADTIV 73 (190)
T ss_pred EEeCCCHHHHHHHHHC---CCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHhc-CCCCEEEEeCeEE
Confidence 344444444 444443 888998854 33222 2245667777653210 111111 1367999999965
Q ss_pred -cCCceecccchHHHH
Q 008627 535 -SNGTVCSRVGTACVA 549 (559)
Q Consensus 535 -aNGsVvNKvGT~~IA 549 (559)
-||.++.|-.+..-|
T Consensus 74 ~~~g~IlgKP~~~eeA 89 (190)
T PRK00032 74 VLDGEVLEKPRDAADA 89 (190)
T ss_pred EECCEEecCCCCHHHH
Confidence 788899998887655
No 398
>PRK13795 hypothetical protein; Provisional
Probab=21.54 E-value=1e+03 Score=27.86 Aligned_cols=69 Identities=16% Similarity=0.116 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcccCCCEEEEecC---cHHHHHHHHHHHHhCCceEEEEcCCCCCc-hHHHHHHHHHh-CCCceEEEec
Q 008627 440 ADRVIVKHAVTKIRDGDVLLTYGS---SSAVEMILQHAHELGKQFRVVIVDSRPKH-EGKLLLRRLVR-KGLSCTYTHI 513 (559)
Q Consensus 440 A~e~Ia~~Aa~~I~dGdvILT~g~---SstV~~iL~~A~e~Gk~FrViVvESRP~~-EG~~LAk~L~~-~GI~vTyI~D 513 (559)
+.+.|-+.+..+ +..+++.+|- |.++..++..+ ...|.|+.+|+.-.+ |-.+.++++.+ .|+++..+..
T Consensus 231 ai~~Ir~~~~~~--~~~v~Va~SGGKDS~vll~L~~~a---~~~~~vvfiDTg~efpet~e~v~~~~~~~gi~i~~~~~ 304 (636)
T PRK13795 231 AVNFIRGVAEKY--NLPVSVSFSGGKDSLVVLDLAREA---LKDFKAFFNNTGLEFPETVENVKEVAEEYGIELIEADA 304 (636)
T ss_pred HHHHHHHHHHHc--CCCEEEEecCcHHHHHHHHHHHHh---CCCcEEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEcc
Confidence 444444444333 3456777765 44555555554 455899888875443 34456666655 5898877754
No 399
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=21.46 E-value=1.3e+02 Score=32.70 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=26.5
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCC
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK 491 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~ 491 (559)
.+||..|.+.....+++.|.+.| ++|+++++.+.
T Consensus 3 ~~ililg~g~~~~~~~~~a~~lG--~~~v~~~~~~~ 36 (450)
T PRK06111 3 QKVLIANRGEIAVRIIRTCQKLG--IRTVAIYSEAD 36 (450)
T ss_pred ceEEEECCcHHHHHHHHHHHHcC--CeEEEEechhh
Confidence 36999999999889999998866 56676665443
No 400
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=21.45 E-value=1.8e+02 Score=27.71 Aligned_cols=39 Identities=28% Similarity=0.503 Sum_probs=25.4
Q ss_pred HHHHHHHhcccCCCEEEEec---CcHHH---HHHHHHHHHhCCce
Q 008627 443 VIVKHAVTKIRDGDVLLTYG---SSSAV---EMILQHAHELGKQF 481 (559)
Q Consensus 443 ~Ia~~Aa~~I~dGdvILT~g---~SstV---~~iL~~A~e~Gk~F 481 (559)
.|.++..+.+++|++||-|. +..|+ ..+|....++|-+|
T Consensus 140 ~i~~~~~~~~~~g~Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy~~ 184 (191)
T TIGR02764 140 SIVDRVVKNTKPGDIILLHASDSAKQTVKALPTIIKKLKEKGYEF 184 (191)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCcHhHHHHHHHHHHHHHHCCCEE
Confidence 45566666788999999993 34443 45555666666544
No 401
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.42 E-value=4.9e+02 Score=28.85 Aligned_cols=89 Identities=10% Similarity=-0.031 Sum_probs=47.5
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceeee
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIl 534 (559)
|..|+++|....=..+.+.+++ ...+|+|.|.++..+-.. ..+|.+ ++...+...+ . -.+.++|.||+...-=
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~--~g~~v~~~d~~~~~~~~~-~~~l~~-~~~~~~~~~~-~-~~~~~~d~vV~SpgI~- 80 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRA--HLPAQALTLFCNAVEARE-VGALAD-AALLVETEAS-A-QRLAAFDVVVKSPGIS- 80 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHH--cCCEEEEEcCCCcccchH-HHHHhh-cCEEEeCCCC-h-HHccCCCEEEECCCCC-
Confidence 4567777664333334444444 345799999887644222 334655 4433332222 1 2346788887654221
Q ss_pred cCCceecccchHHHHHHHhhCCCCC
Q 008627 535 SNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 535 aNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
. +..+-..|++.||||
T Consensus 81 ~---------~~p~~~~a~~~~i~i 96 (468)
T PRK04690 81 P---------YRPEALAAAARGTPF 96 (468)
T ss_pred C---------CCHHHHHHHHcCCcE
Confidence 1 234556677777775
No 402
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=21.41 E-value=6.2e+02 Score=27.29 Aligned_cols=94 Identities=13% Similarity=0.191 Sum_probs=57.2
Q ss_pred HHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHh-CCceEEEEcCCCCC-----chHHHHHHHHHh-CCCceEEE-----
Q 008627 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPK-----HEGKLLLRRLVR-KGLSCTYT----- 511 (559)
Q Consensus 444 Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~-Gk~FrViVvESRP~-----~EG~~LAk~L~~-~GI~vTyI----- 511 (559)
-+++..+.|++|| |+-.+|..||..++....-. -+..+|+-.=.-.. +.--.++..|++ .|-+|.++
T Consensus 104 aA~~l~~~l~~gd-vigV~wGrTv~a~~~~l~~~~~~~~~vV~l~GG~~~~~~~~~~~~~~~~~A~k~~~~~~~l~aP~~ 182 (321)
T COG2390 104 AAQYLESLLKPGD-VIGVGWGRTLSAVVDNLPPAPLRDVKVVQLTGGVGHADGSYNANTIALRLAEKLGAESYLLPAPLV 182 (321)
T ss_pred HHHHHHHhCCCCC-EEEEeccHHHHHHHHhcCcCccCCeEEEECCCCCCCCccccCHHHHHHHHHHHhCCcEEeeecCcc
Confidence 4445556788999 88889999999998886543 34456665543333 222234444443 24344443
Q ss_pred ecc-hHHHHh-------------ccccEEEEcceeeecCCc
Q 008627 512 HIN-AISYII-------------HEVTRVFLGASSVLSNGT 538 (559)
Q Consensus 512 ~Ds-Avs~iM-------------~~VdkVlLGAdaIlaNGs 538 (559)
.++ .....| +++|+.|+|.-.+.++..
T Consensus 183 ~~s~e~r~~l~~e~~v~~vl~~~~~ad~alvGIG~~~~~~~ 223 (321)
T COG2390 183 ASSPELREALLQEPSVREVLDLARSADLALVGIGSLSANST 223 (321)
T ss_pred CCCHHHHHHHHhCcHHHHHHHHHHhCCEEEEecCCCcccch
Confidence 333 222222 269999999988887765
No 403
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=21.40 E-value=48 Score=34.44 Aligned_cols=84 Identities=24% Similarity=0.283 Sum_probs=44.8
Q ss_pred HhcccCCCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHH-----HHHHHHHhCCCceEEEecchHHHHhcc
Q 008627 449 VTKIRDGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGK-----LLLRRLVRKGLSCTYTHINAISYIIHE 522 (559)
Q Consensus 449 a~~I~dGdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~-----~LAk~L~~~GI~vTyI~DsAvs~iM~~ 522 (559)
..++++|-+||-|++--.|. +-|.++ |- .++..=..|-..|+ ...+.+.+. +++.+|.|..++.--.-
T Consensus 117 e~Lv~eGF~VlPY~~~D~v~akrL~d~---Gc--aavMPlgsPIGSg~Gi~n~~~l~~i~~~-~~vPvIvDAGiG~pSda 190 (247)
T PF05690_consen 117 EILVKEGFVVLPYCTDDPVLAKRLEDA---GC--AAVMPLGSPIGSGRGIQNPYNLRIIIER-ADVPVIVDAGIGTPSDA 190 (247)
T ss_dssp HHHHHTT-EEEEEE-S-HHHHHHHHHT---T---SEBEEBSSSTTT---SSTHHHHHHHHHH-GSSSBEEES---SHHHH
T ss_pred HHHHHCCCEEeecCCCCHHHHHHHHHC---CC--CEEEecccccccCcCCCCHHHHHHHHHh-cCCcEEEeCCCCCHHHH
Confidence 34678999999999997763 333333 42 33333455666665 335555543 37777889888765444
Q ss_pred ccEEEEcceeeecCCc
Q 008627 523 VTRVFLGASSVLSNGT 538 (559)
Q Consensus 523 VdkVlLGAdaIlaNGs 538 (559)
+...=+|||+||-|-.
T Consensus 191 a~AMElG~daVLvNTA 206 (247)
T PF05690_consen 191 AQAMELGADAVLVNTA 206 (247)
T ss_dssp HHHHHTT-SEEEESHH
T ss_pred HHHHHcCCceeehhhH
Confidence 4444577888877743
No 404
>PRK12939 short chain dehydrogenase; Provisional
Probab=21.40 E-value=3.5e+02 Score=25.88 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=40.6
Q ss_pred CCEEEEecCcHHH-HHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHh-------c
Q 008627 455 GDVLLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYII-------H 521 (559)
Q Consensus 455 GdvILT~g~SstV-~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM-------~ 521 (559)
+.+||..|.++-+ ..+.+...++| .+|++++ |....-..+..+|...+.++.++. | .++-.++ .
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G--~~v~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAG--ATVAFND-GLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcC--CEEEEEe-CCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 5677777776555 44444444445 4677774 333444456677766665555443 2 2333333 2
Q ss_pred cccEEEEcce
Q 008627 522 EVTRVFLGAS 531 (559)
Q Consensus 522 ~VdkVlLGAd 531 (559)
.+|.||..+-
T Consensus 84 ~id~vi~~ag 93 (250)
T PRK12939 84 GLDGLVNNAG 93 (250)
T ss_pred CCCEEEECCC
Confidence 4677766653
No 405
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=21.37 E-value=1e+03 Score=25.39 Aligned_cols=48 Identities=19% Similarity=0.309 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCC
Q 008627 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR 489 (559)
Q Consensus 440 A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESR 489 (559)
+.+.+.+ ....+. |..|+.++.......+.....+.|-...++++...
T Consensus 258 ~~~~l~~-~~~~l~-g~~v~i~~~~~~~~~l~~~L~elG~~v~~v~~~~~ 305 (398)
T PF00148_consen 258 AEDALAD-YRERLG-GKRVAIYGDPDRALGLARFLEELGMEVVAVGCDDK 305 (398)
T ss_dssp HHHHHHH-HHHHHT-T-EEEEESSHHHHHHHHHHHHHTT-EEEEEEESSG
T ss_pred HHHHHHh-hHHhhc-CceEEEEcCchhHHHHHHHHHHcCCeEEEEEEccC
Confidence 3444444 334444 77888899987777666666666765555555444
No 406
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=21.36 E-value=5.7e+02 Score=24.57 Aligned_cols=76 Identities=18% Similarity=0.236 Sum_probs=46.1
Q ss_pred CCEEEEecCcHHH-HHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhc-------
Q 008627 455 GDVLLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH------- 521 (559)
Q Consensus 455 GdvILT~g~SstV-~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~------- 521 (559)
+.+||..|-|+-+ ..+.+...+.| .+|+++..|......++..+|.+.|.++.++. | .++..++.
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g--~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEG--AKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFG 83 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 5678888877665 44444455544 56777665544445566777877776666553 2 23333333
Q ss_pred cccEEEEccee
Q 008627 522 EVTRVFLGASS 532 (559)
Q Consensus 522 ~VdkVlLGAda 532 (559)
.+|.||..|-.
T Consensus 84 ~id~vi~~ag~ 94 (247)
T PRK12935 84 KVDILVNNAGI 94 (247)
T ss_pred CCCEEEECCCC
Confidence 37888888754
No 407
>PRK10537 voltage-gated potassium channel; Provisional
Probab=21.31 E-value=1.1e+03 Score=25.90 Aligned_cols=83 Identities=12% Similarity=0.092 Sum_probs=50.2
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhc-----cccEEEEc
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH-----EVTRVFLG 529 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~-----~VdkVlLG 529 (559)
.+-|+..|++..-..+.+..+++|.. |+|+|... .++....|.++.+- |..=...++ +++.|++-
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~--vvVId~d~-------~~~~~~~g~~vI~G-D~td~e~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQA--VTVIVPLG-------LEHRLPDDADLIPG-DSSDSAVLKKAGAARARAILAL 309 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCC--EEEEECch-------hhhhccCCCcEEEe-CCCCHHHHHhcCcccCCEEEEc
Confidence 46789999999888888887766654 44444321 13334457665443 433333443 57777664
Q ss_pred ceeeecCCceecccchHHHHHHHhhCC
Q 008627 530 ASSVLSNGTVCSRVGTACVAMVAYGFH 556 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~~IALaAk~~~ 556 (559)
.+ +..-...+++.||+.+
T Consensus 310 t~---------dD~~Nl~ivL~ar~l~ 327 (393)
T PRK10537 310 RD---------NDADNAFVVLAAKEMS 327 (393)
T ss_pred CC---------ChHHHHHHHHHHHHhC
Confidence 43 2344456888888876
No 408
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.25 E-value=3.5e+02 Score=28.75 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=35.3
Q ss_pred CCCCchHHHHHHHHHhCCCceEEEe-c-chHHHHhccccEEEEcc-------eeeecCCceecccchH
Q 008627 488 SRPKHEGKLLLRRLVRKGLSCTYTH-I-NAISYIIHEVTRVFLGA-------SSVLSNGTVCSRVGTA 546 (559)
Q Consensus 488 SRP~~EG~~LAk~L~~~GI~vTyI~-D-sAvs~iM~~VdkVlLGA-------daIlaNGsVvNKvGT~ 546 (559)
.|=..-|+-||..|.+.|..|++.. - ..+..+.+++|.|++.. ..++..|.++--+|+.
T Consensus 165 Grs~~mG~PmA~~L~~~g~tVtv~~~rT~~l~e~~~~ADIVIsavg~~~~v~~~~lk~GavVIDvGin 232 (296)
T PRK14188 165 GRSNLVGKPMAQLLLAANATVTIAHSRTRDLPAVCRRADILVAAVGRPEMVKGDWIKPGATVIDVGIN 232 (296)
T ss_pred cCCcchHHHHHHHHHhCCCEEEEECCCCCCHHHHHhcCCEEEEecCChhhcchheecCCCEEEEcCCc
Confidence 5556667777777777777777663 1 23555566677666542 1234556666555553
No 409
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=21.21 E-value=5.7e+02 Score=25.78 Aligned_cols=66 Identities=14% Similarity=0.114 Sum_probs=41.5
Q ss_pred HHHHHHHhcccCCCEEEEecCc--HHH-HHHHHHHHHhCCceEEEEcCCCCC-chHHHHHHHHHh-CCCceEEEe
Q 008627 443 VIVKHAVTKIRDGDVLLTYGSS--SAV-EMILQHAHELGKQFRVVIVDSRPK-HEGKLLLRRLVR-KGLSCTYTH 512 (559)
Q Consensus 443 ~Ia~~Aa~~I~dGdvILT~g~S--stV-~~iL~~A~e~Gk~FrViVvESRP~-~EG~~LAk~L~~-~GI~vTyI~ 512 (559)
.|.+.+.+...+ .+++.+|.. ++| +.++.. .+.++.|+-+|+.-. -|..++++++.+ .||++.++.
T Consensus 30 e~i~~a~~~~~~-~i~vs~SGGKDS~vlL~L~~~---~~~~i~vvfiDTG~~~pet~e~~~~~~~~~gl~l~v~~ 100 (241)
T PRK02090 30 ERLAWALENFGG-RLALVSSFGAEDAVLLHLVAQ---VDPDIPVIFLDTGYLFPETYRFIDELTERLLLNLKVYR 100 (241)
T ss_pred HHHHHHHHHcCC-CEEEEecCCHHHHHHHHHHHh---cCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEC
Confidence 455566665543 366666542 444 444444 356788887776544 468888888875 488888775
No 410
>PRK10717 cysteine synthase A; Provisional
Probab=21.15 E-value=1.3e+02 Score=31.69 Aligned_cols=72 Identities=22% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCC-ceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceeeecCC
Q 008627 465 SAVEMILQHAHELGK-QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNG 537 (559)
Q Consensus 465 stV~~iL~~A~e~Gk-~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIlaNG 537 (559)
+.+..+|..|.+.|+ ...-.|+++.-.+-|..+|..-...||+|++++...+.-...+--. ..||+.+.-+|
T Consensus 46 Rga~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~~~-~~GA~V~~~~~ 118 (330)
T PRK10717 46 RAALNIIWDAEKRGLLKPGGTIVEGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLR-ALGAELVLVPA 118 (330)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH-HcCCEEEEeCC
No 411
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=21.12 E-value=2.5e+02 Score=30.11 Aligned_cols=66 Identities=20% Similarity=0.253 Sum_probs=40.0
Q ss_pred HHHHHHHHhcccC-CCEEEEecCcHHHHHHHHHHHHh-----CCceEEEEcCCCCCchHH----HHHHHHHhCCCce
Q 008627 442 RVIVKHAVTKIRD-GDVLLTYGSSSAVEMILQHAHEL-----GKQFRVVIVDSRPKHEGK----LLLRRLVRKGLSC 508 (559)
Q Consensus 442 e~Ia~~Aa~~I~d-GdvILT~g~SstV~~iL~~A~e~-----Gk~FrViVvESRP~~EG~----~LAk~L~~~GI~v 508 (559)
+.+++..++++.+ -.+|+|||+..-|-.+++..... ...+.+...||- ..=|. .|-.+|.+.|+++
T Consensus 28 ~~~a~~i~~l~~~g~~vvi~hGnGPqvG~i~~~~~~~~~~~~~~pld~~~a~~~-G~ig~~~~~al~~~l~~~~~~~ 103 (308)
T cd04235 28 KIAAKALADLIKNGHEVVITHGNGPQVGNLLLQNEAAAEKVPAYPLDVCGAMSQ-GMIGYMLQQALDNELPKRGIDK 103 (308)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhccccCCCCCcchhcchhh-HHHHHHHHHHHHHHHHHcCCCC
Confidence 3455555566766 48999999999998777764332 234555555553 11233 3445667778763
No 412
>PRK07682 hypothetical protein; Validated
Probab=21.03 E-value=7.4e+02 Score=25.93 Aligned_cols=52 Identities=21% Similarity=0.304 Sum_probs=27.3
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~ 512 (559)
.++++|.|.+..+..++....+.|. +|++. .|.+.+...+ +...|..+..+.
T Consensus 82 ~~i~~t~G~~~al~~~~~~l~~~gd--~vl~~--~p~y~~~~~~--~~~~g~~~~~~~ 133 (378)
T PRK07682 82 DEIIVTVGASQALDVAMRAIINPGD--EVLIV--EPSFVSYAPL--VTLAGGVPVPVA 133 (378)
T ss_pred CcEEEeCChHHHHHHHHHHhCCCCC--EEEEe--CCCchhhHHH--HHHcCCEEEEee
Confidence 3688888877766655554443332 44443 3655544332 222465555543
No 413
>PF09664 DUF2399: Protein of unknown function C-terminus (DUF2399); InterPro: IPR024465 This domain is found in archaeal, bacterial and eukaryotic proteins. Its function is unknown.
Probab=20.94 E-value=1.8e+02 Score=27.78 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=32.6
Q ss_pred EEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec
Q 008627 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI 513 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D 513 (559)
.|.++=|.+++..++.... ....-+||++..|..-.+.|...|.+.|+.+.|..|
T Consensus 20 ~V~VvENp~Vf~~~~~~~~--~~~~pLVCt~G~p~~A~~~LL~~L~~~g~~l~y~GD 74 (152)
T PF09664_consen 20 RVYVVENPAVFSALADELG--ASCPPLVCTSGQPSAAARRLLDRLAAAGARLYYSGD 74 (152)
T ss_pred EEEEEecHHHHHHHHHhcC--CCCCeEEEcCCcHHHHHHHHHHHHHhCCCEEEEecC
Confidence 3556666655554444411 244556666666666666666667666666666665
No 414
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=20.89 E-value=9.3e+02 Score=26.84 Aligned_cols=27 Identities=15% Similarity=0.099 Sum_probs=20.9
Q ss_pred HHhhhcCCcccChHHHHHHHHHHHHHH
Q 008627 335 VGLQYLSGDICGGNARCIAMLQAFQEA 361 (559)
Q Consensus 335 Lglq~~~~~I~GSnAraiA~L~aLk~v 361 (559)
-|.++-+.+++|+.+..-+.|+++.+.
T Consensus 66 TGEDvvEi~~HGg~~v~~~il~~l~~~ 92 (442)
T TIGR00450 66 TGEDVIEIQCHGSMLIVQEILQLCLKS 92 (442)
T ss_pred ccccEEEEECCCCHHHHHHHHHHHHHc
Confidence 355666778899999888888887765
No 415
>PRK12342 hypothetical protein; Provisional
Probab=20.80 E-value=4.6e+02 Score=27.26 Aligned_cols=84 Identities=17% Similarity=0.107 Sum_probs=50.6
Q ss_pred CEEEEecCcHHHHH-HHHHHHHhCCceEEEEcCCC-CCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceee
Q 008627 456 DVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSR-PKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (559)
Q Consensus 456 dvILT~g~SstV~~-iL~~A~e~Gk~FrViVvESR-P~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaI 533 (559)
-++||+|..+.-.. ++++|...|-.--|.|.|.. ........++-|+. ++-.+ ..|.||.|-.++
T Consensus 54 Vtvls~Gp~~a~~~~l~r~alamGaD~avli~d~~~~g~D~~ata~~La~-----------~i~~~--~~DLVl~G~~s~ 120 (254)
T PRK12342 54 IAALTVGGSLLQNSKVRKDVLSRGPHSLYLVQDAQLEHALPLDTAKALAA-----------AIEKI--GFDLLLFGEGSG 120 (254)
T ss_pred EEEEEeCCChHhHHHHHHHHHHcCCCEEEEEecCccCCCCHHHHHHHHHH-----------HHHHh--CCCEEEEcCCcc
Confidence 36789998776555 56878888876555554331 11223334555554 22221 489999998877
Q ss_pred ecCCceecccchHHHHHHHhhCCCCC
Q 008627 534 LSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 534 laNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
-.+.+.+ =+++|...++|+
T Consensus 121 D~~tgqv-------g~~lA~~Lg~P~ 139 (254)
T PRK12342 121 DLYAQQV-------GLLLGELLQLPV 139 (254)
T ss_pred cCCCCCH-------HHHHHHHhCCCc
Confidence 6654422 246777777774
No 416
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=20.80 E-value=4.8e+02 Score=24.85 Aligned_cols=56 Identities=23% Similarity=0.283 Sum_probs=31.9
Q ss_pred HHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 008627 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 444 Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~ 512 (559)
|+..-.+.+....+ -+|+ =+.++..|.+.| +++|+=+ -++|-++|.+.|||+.++-
T Consensus 69 ia~~~~er~~~~~~-~~~a----De~i~~~a~~~~---~~iVaTn-----D~eLk~rlr~~GIPvi~lr 124 (136)
T COG1412 69 IALKYAERLECIHK-GRYA----DECLLEAALKHG---RYIVATN-----DKELKRRLRENGIPVITLR 124 (136)
T ss_pred HHHHHhhccCcccc-CCCh----HHHHHHHHHHcC---CEEEEeC-----CHHHHHHHHHcCCCEEEEe
Confidence 44444444443333 3343 233344444444 5555522 3578899999999998875
No 417
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.80 E-value=5e+02 Score=28.31 Aligned_cols=88 Identities=15% Similarity=0.144 Sum_probs=52.3
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceeeec
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIla 535 (559)
..|+.+|...+=...+......+-.+.|.+.|.++... +...|.+ ||.+.+-... .. .+.++|.|++..- |-.
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~---~~~~l~~-g~~~~~g~~~-~~-~~~~~d~vV~Spg-I~~ 80 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPP---GQEQLPE-DVELHSGGWN-LE-WLLEADLVVTNPG-IAL 80 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCch---hHHHhhc-CCEEEeCCCC-hH-HhccCCEEEECCC-CCC
Confidence 45677766655555566555544448999999887532 3345644 7776544211 22 2367888876542 211
Q ss_pred CCceecccchHHHHHHHhhCCCCC
Q 008627 536 NGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 536 NGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+...-..|++.||||
T Consensus 81 ---------~~p~~~~a~~~gi~i 95 (438)
T PRK04663 81 ---------ATPEIQQVLAAGIPV 95 (438)
T ss_pred ---------CCHHHHHHHHCCCcE
Confidence 235667778888885
No 418
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.79 E-value=3.4e+02 Score=27.28 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=49.9
Q ss_pred CCCCchHHHHHHHHHhCCCceEEEecc---hHHH---Hhcccc---EEEEcceeeec---------CC--ceecccchHH
Q 008627 488 SRPKHEGKLLLRRLVRKGLSCTYTHIN---AISY---IIHEVT---RVFLGASSVLS---------NG--TVCSRVGTAC 547 (559)
Q Consensus 488 SRP~~EG~~LAk~L~~~GI~vTyI~Ds---Avs~---iM~~Vd---kVlLGAdaIla---------NG--sVvNKvGT~~ 547 (559)
..+..+...+++.|.+.||++--|+.+ ++.. +-++.. .++|||-+|+. .| .+++..-.-.
T Consensus 21 ~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~~~~~ 100 (213)
T PRK06552 21 GESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSPSFNRE 100 (213)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECCCCCHH
Confidence 335667888999999999987666543 2222 222331 48999988874 33 3677777788
Q ss_pred HHHHHhhCCCCC
Q 008627 548 VAMVAYGFHIPV 559 (559)
Q Consensus 548 IALaAk~~~VPV 559 (559)
+.-.|+++++|+
T Consensus 101 v~~~~~~~~i~~ 112 (213)
T PRK06552 101 TAKICNLYQIPY 112 (213)
T ss_pred HHHHHHHcCCCE
Confidence 888899988885
No 419
>PF07046 CRA_rpt: Cytoplasmic repetitive antigen (CRA) like repeat; InterPro: IPR009761 This family consists of several repeats of around 42 residues in length. These repeated sequences are found in multiple copies in Trypanosoma cruzi antigens, Q26907 from SWISSPROT contains 23 copies of this repeat [].
Probab=20.73 E-value=97 Score=23.83 Aligned_cols=26 Identities=46% Similarity=0.475 Sum_probs=18.7
Q ss_pred cccccHHHHHHHHHHHHHHHHHHhhc
Q 008627 192 KEKTSKAERRAIQEAQRAAKAAAKAE 217 (559)
Q Consensus 192 ~~~~~kAERRa~Qeaqraakaa~k~~ 217 (559)
|.+...|-|.+.-|.||||.+.+..+
T Consensus 4 K~kaaEa~k~aEaeKqraAEA~k~aE 29 (42)
T PF07046_consen 4 KRKAAEATKVAEAEKQRAAEATKAAE 29 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677788888888888776544
No 420
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=20.68 E-value=3.1e+02 Score=27.92 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhCCceEEEEcCCCCCchHH--HHHHHHHhCCCceEEEec
Q 008627 466 AVEMILQHAHELGKQFRVVIVDSRPKHEGK--LLLRRLVRKGLSCTYTHI 513 (559)
Q Consensus 466 tV~~iL~~A~e~Gk~FrViVvESRP~~EG~--~LAk~L~~~GI~vTyI~D 513 (559)
.+...++.|++.|....+.+.++-...... ++++.+.+.|++..++.|
T Consensus 113 ~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~D 162 (263)
T cd07943 113 VSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVTD 162 (263)
T ss_pred HHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 444555555555555555544332222222 335555555666555555
No 421
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=20.66 E-value=4.8e+02 Score=26.47 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=26.4
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCC
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP 490 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP 490 (559)
.+..|++||.++.+++-..++..|+..|. .+|+++.+.+
T Consensus 164 ~~~~~~~vlI~g~~~vg~~~~~~a~~~g~-~~v~~~~~~~ 202 (340)
T cd05284 164 YLDPGSTVVVIGVGGLGHIAVQILRALTP-ATVIAVDRSE 202 (340)
T ss_pred cCCCCCEEEEEcCcHHHHHHHHHHHHhCC-CcEEEEeCCH
Confidence 46778999999966644555556665552 6778776654
No 422
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=20.65 E-value=2.9e+02 Score=29.24 Aligned_cols=94 Identities=14% Similarity=0.128 Sum_probs=64.9
Q ss_pred CcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHH----HHHHHHh-CCCceEEEecch--HHHHhccccEEEEcceeeec
Q 008627 463 SSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL----LLRRLVR-KGLSCTYTHINA--ISYIIHEVTRVFLGASSVLS 535 (559)
Q Consensus 463 ~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~----LAk~L~~-~GI~vTyI~DsA--vs~iM~~VdkVlLGAdaIla 535 (559)
+..++..+|+.|-+.+..+-+-+.++.=.+-|.+ +++.+++ ..|||.+-+|-+ ...+++-++. |-.+|+-
T Consensus 27 n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLDHg~~~e~i~~Ai~~---GftSVM~ 103 (284)
T PRK09195 27 NLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDHHEKFDDIAQKVRS---GVRSVMI 103 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHc---CCCEEEe
Confidence 3467788888877766554444444332334443 3444443 689999999976 5555555554 8899999
Q ss_pred CCcee----cccchHHHHHHHhhCCCCC
Q 008627 536 NGTVC----SRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 536 NGsVv----NKvGT~~IALaAk~~~VPV 559 (559)
||+-+ |-.=|..++-.||.+||.|
T Consensus 104 DgS~l~~eeNi~~T~~vv~~Ah~~gv~V 131 (284)
T PRK09195 104 DGSHLPFAQNISLVKEVVDFCHRFDVSV 131 (284)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 99976 5677888999999999865
No 423
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=20.61 E-value=3.9e+02 Score=32.57 Aligned_cols=87 Identities=17% Similarity=0.249 Sum_probs=60.8
Q ss_pred HHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcC-CCCCchHHHHHHHHHh-CCCceEEEec--chHH
Q 008627 442 RVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVD-SRPKHEGKLLLRRLVR-KGLSCTYTHI--NAIS 517 (559)
Q Consensus 442 e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvE-SRP~~EG~~LAk~L~~-~GI~vTyI~D--sAvs 517 (559)
+.+......++..|+.||-++.|..++.+|+.....-+.++-.=+| +-|-..-..|+.++.+ .-+.|-+++- ..++
T Consensus 533 ~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLG 612 (923)
T KOG0387|consen 533 KVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLG 612 (923)
T ss_pred HHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccc
Confidence 4566777788999999999999999999998876532444444344 4555555567777763 4677777773 5666
Q ss_pred HHhccccEEEE
Q 008627 518 YIIHEVTRVFL 528 (559)
Q Consensus 518 ~iM~~VdkVlL 528 (559)
.-+-.+|+|||
T Consensus 613 lNLTgAnRVII 623 (923)
T KOG0387|consen 613 LNLTGANRVII 623 (923)
T ss_pred cccccCceEEE
Confidence 66667777765
No 424
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=20.61 E-value=3e+02 Score=27.94 Aligned_cols=71 Identities=17% Similarity=0.138 Sum_probs=43.8
Q ss_pred cHHHHHHHHHHHH---hCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHH----hccccEEEEcceeeecC
Q 008627 464 SSAVEMILQHAHE---LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI----IHEVTRVFLGASSVLSN 536 (559)
Q Consensus 464 SstV~~iL~~A~e---~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~i----M~~VdkVlLGAdaIlaN 536 (559)
+...+.++.+|++ .+.++-|=|-=+ .+|.+.++.|.+.||+|..+..-.+... ...++.|=....++-.+
T Consensus 62 ~~d~e~mi~eA~~l~~~~~nv~IKIP~T---~~Gl~Ai~~L~~~GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvgR~~~~ 138 (220)
T PRK12655 62 SRDAQGMVEEAKRLRNAIPGIVVKIPVT---AEGLAAIKKLKKEGIPTLGTAVYSAAQGLLAALAGAKYVAPYVNRVDAQ 138 (220)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEeCCC---HHHHHHHHHHHHCCCceeEeEecCHHHHHHHHHcCCeEEEeecchHhHc
Confidence 4456777777765 233332323222 3899999999999999887765444444 33566665555555544
Q ss_pred C
Q 008627 537 G 537 (559)
Q Consensus 537 G 537 (559)
|
T Consensus 139 g 139 (220)
T PRK12655 139 G 139 (220)
T ss_pred C
Confidence 4
No 425
>PRK14368 Maf-like protein; Provisional
Probab=20.56 E-value=3.6e+02 Score=26.81 Aligned_cols=79 Identities=24% Similarity=0.328 Sum_probs=46.3
Q ss_pred EEecCcHHHH-HHHHHHHHhCCceEEEEc---CCCCCc-hHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceee
Q 008627 459 LTYGSSSAVE-MILQHAHELGKQFRVVIV---DSRPKH-EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (559)
Q Consensus 459 LT~g~SstV~-~iL~~A~e~Gk~FrViVv---ESRP~~-EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaI 533 (559)
|.++.+|--. ++|..+ |..|.|+.. |+.+.. .-.+++.+|+...-. ++... .-+.++||||.|
T Consensus 7 lILAS~SprR~eLL~~~---g~~f~v~~~~iDE~~~~~~~p~~~v~~lA~~KA~-------~v~~~--~~~~~vI~aDTv 74 (193)
T PRK14368 7 IVLASASPRRSELLASA---GIEFDVVPADIPEEPLPGEEPVDHVLRLAREKAR-------AAAAL--AEGRFFIGADTI 74 (193)
T ss_pred EEEeCCCHHHHHHHHHC---CCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHh--CCCCEEEEeCcE
Confidence 3455554444 445443 889998855 443322 244566666653211 11111 236799999996
Q ss_pred e-cCCceecccchHHHH
Q 008627 534 L-SNGTVCSRVGTACVA 549 (559)
Q Consensus 534 l-aNGsVvNKvGT~~IA 549 (559)
. -||.++.|-.+..=|
T Consensus 75 V~~~g~ilgKP~~~~eA 91 (193)
T PRK14368 75 VVCDGEIMGKPKDEADA 91 (193)
T ss_pred EEECCEEecCCCCHHHH
Confidence 5 788899988876655
No 426
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=20.54 E-value=1.6e+02 Score=26.64 Aligned_cols=39 Identities=21% Similarity=0.182 Sum_probs=18.4
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHh
Q 008627 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII 520 (559)
Q Consensus 482 rViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM 520 (559)
-|.|+-|...++..+++++|.+.|+++.++.-.+...++
T Consensus 4 ~l~vtGs~~~~~~~~~l~~L~~~g~~v~vv~S~~A~~~~ 42 (129)
T PF02441_consen 4 LLGVTGSIAAYKAPDLLRRLKRAGWEVRVVLSPSAERFV 42 (129)
T ss_dssp EEEE-SSGGGGGHHHHHHHHHTTTSEEEEEESHHHHHHS
T ss_pred EEEEECHHHHHHHHHHHHHHhhCCCEEEEEECCcHHHHh
Confidence 344444444445555555555555555555444434333
No 427
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=20.48 E-value=2.8e+02 Score=26.00 Aligned_cols=9 Identities=22% Similarity=0.711 Sum_probs=3.8
Q ss_pred eEEEEcCCC
Q 008627 481 FRVVIVDSR 489 (559)
Q Consensus 481 FrViVvESR 489 (559)
++|||+|..
T Consensus 29 ~evivvdd~ 37 (221)
T cd02522 29 LEIIVVDGG 37 (221)
T ss_pred cEEEEEeCC
Confidence 444444433
No 428
>PRK14361 Maf-like protein; Provisional
Probab=20.46 E-value=3.4e+02 Score=26.87 Aligned_cols=77 Identities=18% Similarity=0.274 Sum_probs=46.0
Q ss_pred ecCcHHHH-HHHHHHHHhCCceEEEEc---CCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceeee-c
Q 008627 461 YGSSSAVE-MILQHAHELGKQFRVVIV---DSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL-S 535 (559)
Q Consensus 461 ~g~SstV~-~iL~~A~e~Gk~FrViVv---ESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIl-a 535 (559)
++.+|--. ++|..+ |..|.|+.. |+.+...-.+++.+|+..+-. ++..- .-+.++||||.|. -
T Consensus 3 LAS~SprR~elL~~~---g~~f~v~~~~~dE~~~~~~p~~~v~~lA~~Ka~-------~v~~~--~~~~~vI~aDTvV~~ 70 (187)
T PRK14361 3 LASGSPRRRELLENL---GVPFQVVVSGEAEDSTETDPARLAAELALLKAR-------AVARL--HPDAVVIAADTVVAL 70 (187)
T ss_pred EccCCHHHHHHHHHC---CCCcEEECCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHh--CCCCEEEEeCeEEEE
Confidence 34444443 444443 888988754 444333344667777654321 11111 2367999999966 7
Q ss_pred CCceecccchHHHH
Q 008627 536 NGTVCSRVGTACVA 549 (559)
Q Consensus 536 NGsVvNKvGT~~IA 549 (559)
||.++.|-.+..-|
T Consensus 71 ~g~ilgKP~~~eeA 84 (187)
T PRK14361 71 GGVLLAKPADEAEN 84 (187)
T ss_pred CCEEecCCCCHHHH
Confidence 88899998887665
No 429
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=20.39 E-value=3.2e+02 Score=27.84 Aligned_cols=84 Identities=15% Similarity=0.083 Sum_probs=0.0
Q ss_pred EEEEecCcHHHHHHHHHHHHhCCceEEE-EcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceeeec
Q 008627 457 VLLTYGSSSAVEMILQHAHELGKQFRVV-IVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~Gk~FrVi-VvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIla 535 (559)
.|..+|+++.+-..+..+..+...++|. ++|..+...... ...|+.++ ..+..++.++|.|+.-+
T Consensus 3 kV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-----~~~~i~~~----~dl~~ll~~~DvVid~t----- 68 (257)
T PRK00048 3 KVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-----GALGVAIT----DDLEAVLADADVLIDFT----- 68 (257)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-----CCCCcccc----CCHHHhccCCCEEEECC-----
Q ss_pred CCceecccchHHHHHHHhhCCCCC
Q 008627 536 NGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 536 NGsVvNKvGT~~IALaAk~~~VPV 559 (559)
..-..+.++..|-++|+||
T Consensus 69 -----~p~~~~~~~~~al~~G~~v 87 (257)
T PRK00048 69 -----TPEATLENLEFALEHGKPL 87 (257)
T ss_pred -----CHHHHHHHHHHHHHcCCCE
No 430
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=20.38 E-value=9.8e+02 Score=25.64 Aligned_cols=106 Identities=16% Similarity=0.123 Sum_probs=65.6
Q ss_pred HHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCC----------Cc----h--H----HHHHHHHH
Q 008627 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP----------KH----E--G----KLLLRRLV 502 (559)
Q Consensus 443 ~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP----------~~----E--G----~~LAk~L~ 502 (559)
.|...+.++|.+ ..||..|..++=..++......|.. ++.++|..- .+ - | ..+++.|.
T Consensus 13 ~~G~~~Q~~L~~-~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~ 90 (339)
T PRK07688 13 PIGEEGQQKLRE-KHVLIIGAGALGTANAEMLVRAGVG-KVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLE 90 (339)
T ss_pred hcCHHHHHHhcC-CcEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHH
Confidence 366677777864 6789999887666666666665653 566666432 00 0 2 12245565
Q ss_pred hC--CCceEEEe----cchHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 503 RK--GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 503 ~~--GI~vTyI~----DsAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+. .|.++.+. ...+..++.++|.||.+.|.. ---+.+.-+|..++||+
T Consensus 91 ~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~---------~~r~~ln~~~~~~~iP~ 144 (339)
T PRK07688 91 EINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNF---------ETRFIVNDAAQKYGIPW 144 (339)
T ss_pred HHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCH---------HHHHHHHHHHHHhCCCE
Confidence 44 35555443 223456688899999987743 22346777888899985
No 431
>PRK08329 threonine synthase; Validated
Probab=20.33 E-value=1.5e+02 Score=31.52 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=28.2
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~ 512 (559)
++|.+.+...+-..+=..|...|.++.|+|-+.-| +++ ...+...|-++..+.
T Consensus 105 ~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~--~~k--~~~~~~~GA~v~~v~ 157 (347)
T PRK08329 105 NEVVIDSSGNAALSLALYSLSEGIKVHVFVSYNAS--KEK--ISLLSRLGAELHFVE 157 (347)
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCCh--HHH--HHHHHHcCCEEEEEC
Confidence 45666654434333334445567777777766543 222 344445666666664
No 432
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=20.30 E-value=3.5e+02 Score=27.48 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=26.7
Q ss_pred cccCCCEEEEecCcHHH-HHHHHHHHHhCCceEEEEcCCCC
Q 008627 451 KIRDGDVLLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRP 490 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV-~~iL~~A~e~Gk~FrViVvESRP 490 (559)
.+..|++||.|+-++.| ..++..|+..| .+||++.+.+
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G--~~Vi~~~~s~ 173 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAKLKG--CKVVGAAGSD 173 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCH
Confidence 57889999999976655 45555566555 4688777654
No 433
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=20.29 E-value=2.9e+02 Score=26.47 Aligned_cols=34 Identities=9% Similarity=-0.096 Sum_probs=14.1
Q ss_pred eEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc
Q 008627 481 FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN 514 (559)
Q Consensus 481 FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds 514 (559)
++++.-..+.++.+..+-.-+....-+..+++|+
T Consensus 63 i~~~~~~~~~G~k~~a~n~g~~~a~~~~i~~~Da 96 (232)
T cd06437 63 IKHVRRADRTGYKAGALAEGMKVAKGEYVAIFDA 96 (232)
T ss_pred eEEEECCCCCCCchHHHHHHHHhCCCCEEEEEcC
Confidence 3333333444433322323333334456666553
No 434
>PRK05269 transaldolase B; Provisional
Probab=20.28 E-value=1.1e+03 Score=25.43 Aligned_cols=30 Identities=20% Similarity=0.342 Sum_probs=24.8
Q ss_pred chHHHHHHHHHhCCCceEEEecchHHHHhc
Q 008627 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIH 521 (559)
Q Consensus 492 ~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~ 521 (559)
.+|.+.++.|.+.||+|.+++.-.+...+.
T Consensus 137 ~eGi~A~~~L~~~GI~vn~TlvFs~~Qa~~ 166 (318)
T PRK05269 137 WEGIRAAEQLEKEGINCNLTLLFSFAQARA 166 (318)
T ss_pred HHHHHHHHHHHHcCCceeEeEecCHHHHHH
Confidence 699999999999999999888766555544
No 435
>PRK12414 putative aminotransferase; Provisional
Probab=20.28 E-value=4.7e+02 Score=27.69 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=28.3
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~ 512 (559)
.++|+|-|.+..+..++......|. +|++. .|.+.+.... +...|..+..+.
T Consensus 91 ~~i~it~g~~~al~~~~~~l~~~gd--~Vlv~--~p~y~~~~~~--~~~~g~~~~~v~ 142 (384)
T PRK12414 91 SEVTVIASASEGLYAAISALVHPGD--EVIYF--EPSFDSYAPI--VRLQGATPVAIK 142 (384)
T ss_pred CcEEEECChHHHHHHHHHHhcCCCC--EEEEe--CCCccchHHH--HHHcCCEEEEEe
Confidence 3588887777666555554444343 45553 4666544332 223566665554
No 436
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=20.28 E-value=1.7e+02 Score=26.45 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=43.5
Q ss_pred cCcHHHHHHHHHHHHh--CCceEEEEcCCC--CCchH-HHHHHHHHhCCCceE-EEecchHHHHhccccEEEEcc
Q 008627 462 GSSSAVEMILQHAHEL--GKQFRVVIVDSR--PKHEG-KLLLRRLVRKGLSCT-YTHINAISYIIHEVTRVFLGA 530 (559)
Q Consensus 462 g~SstV~~iL~~A~e~--Gk~FrViVvESR--P~~EG-~~LAk~L~~~GI~vT-yI~DsAvs~iM~~VdkVlLGA 530 (559)
|+|...+.++++..++ +..|.|+-.-+. |...= ...++.|.+.||+.. ..+-.--...+.+.|.||.=.
T Consensus 10 cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~~~~~~~~~a~~~l~~~gid~~~~~s~~l~~~~~~~~D~Ii~m~ 84 (138)
T PF01451_consen 10 CRSPMAEAILRHLLKQRLGDRFEVESAGTEAWPGEPVDPRAIAVLKEHGIDISGHRSRQLTEEDLDEADLIITMD 84 (138)
T ss_dssp SHHHHHHHHHHHHHHHTHTTTEEEEEEESSSTTTSSSTHHHHHHHHHTTSSCTTSBBCBGGHHHHHHSSEEEESS
T ss_pred chHHHHHHHHHHhccccccCCcEEEEEeecccccccccchHHHHHHHhCCCcccceeccccccccccCCEEEEcc
Confidence 6678888888887553 678888876555 32221 134677888999866 223222234456788887643
No 437
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=20.22 E-value=5.3e+02 Score=27.27 Aligned_cols=88 Identities=16% Similarity=0.235 Sum_probs=55.5
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCce-EEEEcCCCCCchHHHHHHHHHhC-CCceEEEecchHHHHhccccEEEEcce
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQF-RVVIVDSRPKHEGKLLLRRLVRK-GLSCTYTHINAISYIIHEVTRVFLGAS 531 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~F-rViVvESRP~~EG~~LAk~L~~~-GI~vTyI~DsAvs~iM~~VdkVlLGAd 531 (559)
+..+|+.+|........+...... +.+ +|+|. +|-......++++|.+. |+++... ..+...+.++|.|+...-
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~-~~i~~v~V~-~R~~~~a~~~a~~~~~~~g~~v~~~--~~~~~av~~aDiVvtaT~ 203 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLV-RDIRSARIW-ARDSAKAEALALQLSSLLGIDVTAA--TDPRAAMSGADIIVTTTP 203 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHh-CCccEEEEE-CCCHHHHHHHHHHHHhhcCceEEEe--CCHHHHhccCCEEEEecC
Confidence 556899999987776666654322 334 45555 55445567788888643 7765443 334555678999887542
Q ss_pred e--------eecCCceecccch
Q 008627 532 S--------VLSNGTVCSRVGT 545 (559)
Q Consensus 532 a--------IlaNGsVvNKvGT 545 (559)
+ .+..|..++-+|.
T Consensus 204 s~~p~i~~~~l~~g~~i~~vg~ 225 (326)
T TIGR02992 204 SETPILHAEWLEPGQHVTAMGS 225 (326)
T ss_pred CCCcEecHHHcCCCcEEEeeCC
Confidence 2 3456777777774
No 438
>PRK07206 hypothetical protein; Provisional
Probab=20.19 E-value=3.6e+02 Score=28.81 Aligned_cols=32 Identities=9% Similarity=0.017 Sum_probs=16.8
Q ss_pred EEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCC
Q 008627 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK 491 (559)
Q Consensus 458 ILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~ 491 (559)
||..+....-..+++.+++. .++|+++++.+.
T Consensus 5 ~liv~~~~~~~~~~~a~~~~--G~~~v~v~~~~~ 36 (416)
T PRK07206 5 VVIVDPFSSGKFLAPAFKKR--GIEPIAVTSSCL 36 (416)
T ss_pred EEEEcCCchHHHHHHHHHHc--CCeEEEEEcCCC
Confidence 44443333334455556553 467777776653
No 439
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=20.18 E-value=5.3e+02 Score=26.43 Aligned_cols=71 Identities=14% Similarity=0.196 Sum_probs=38.6
Q ss_pred CEEEEecCcH---HHHHHHHHHHHhCCceEEEEc--CCCCCchHHHHHHHHHhCCCceEEEec-chHHHHhccccEEEEc
Q 008627 456 DVLLTYGSSS---AVEMILQHAHELGKQFRVVIV--DSRPKHEGKLLLRRLVRKGLSCTYTHI-NAISYIIHEVTRVFLG 529 (559)
Q Consensus 456 dvILT~g~Ss---tV~~iL~~A~e~Gk~FrViVv--ESRP~~EG~~LAk~L~~~GI~vTyI~D-sAvs~iM~~VdkVlLG 529 (559)
.+++|+|-|. ....+|....+....+++.|+ ...|.. .++-+ +.+..-++.+... +-+..+|..+|.||..
T Consensus 172 ~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~vv~G~~~~~~--~~l~~-~~~~~~~i~~~~~~~~m~~lm~~aDl~Is~ 248 (279)
T TIGR03590 172 RVLVSFGGADPDNLTLKLLSALAESQINISITLVTGSSNPNL--DELKK-FAKEYPNIILFIDVENMAELMNEADLAIGA 248 (279)
T ss_pred eEEEEeCCcCCcCHHHHHHHHHhccccCceEEEEECCCCcCH--HHHHH-HHHhCCCEEEEeCHHHHHHHHHHCCEEEEC
Confidence 5688888663 234555444333344444443 344543 23322 2222224555544 5789999999999763
No 440
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=20.14 E-value=1.8e+02 Score=29.68 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhCCceEEEEcCCCC
Q 008627 467 VEMILQHAHELGKQFRVVIVDSRP 490 (559)
Q Consensus 467 V~~iL~~A~e~Gk~FrViVvESRP 490 (559)
+..++..+.+ ..++|++++..+
T Consensus 20 ~~~i~~al~~--~g~~v~~i~~~~ 41 (315)
T TIGR01205 20 AAAVLKALRD--LGYDVYPVDIDK 41 (315)
T ss_pred HHHHHHHHhh--cCCEEEEEeecC
Confidence 3344444433 456666666554
No 441
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=20.10 E-value=4.2e+02 Score=22.19 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=24.4
Q ss_pred HHHHHHHhccCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008627 404 FLKSQIAKIPISLS-ESEAKATLHSDIERFINEKIILADRVIVKH 447 (559)
Q Consensus 404 rlk~~I~~l~~~~s-~~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~ 447 (559)
.|...+.++.+... +.++.+.|.+-.++||+.-+..+ -.+++|
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~a-c~lAKh 47 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFA-CRLAKH 47 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHhc
Confidence 44455555543332 56788889999999997733333 334443
No 442
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=20.10 E-value=1.7e+02 Score=23.82 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=23.2
Q ss_pred EEEcCCCCCchHHHHHHHHHhCCCceEEEec
Q 008627 483 VVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI 513 (559)
Q Consensus 483 ViVvESRP~~EG~~LAk~L~~~GI~vTyI~D 513 (559)
|+|+-+ .+-|.++|..|.+.|.+||+|.-
T Consensus 2 vvViGg--G~ig~E~A~~l~~~g~~vtli~~ 30 (80)
T PF00070_consen 2 VVVIGG--GFIGIELAEALAELGKEVTLIER 30 (80)
T ss_dssp EEEESS--SHHHHHHHHHHHHTTSEEEEEES
T ss_pred EEEECc--CHHHHHHHHHHHHhCcEEEEEec
Confidence 455544 46799999999999999999863
No 443
>PRK00078 Maf-like protein; Reviewed
Probab=20.08 E-value=3.7e+02 Score=26.60 Aligned_cols=79 Identities=16% Similarity=0.237 Sum_probs=45.7
Q ss_pred ecCcHHHH-HHHHHHHHhCCceEEEEc---CCCCC--chHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceeee
Q 008627 461 YGSSSAVE-MILQHAHELGKQFRVVIV---DSRPK--HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (559)
Q Consensus 461 ~g~SstV~-~iL~~A~e~Gk~FrViVv---ESRP~--~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIl 534 (559)
++.+|--. ++|..+ |..|.|+.. |+... ..-.+++.+|+..+-. ++...+..-+.++||||+|.
T Consensus 5 LAS~SprR~elL~~~---g~~f~v~~~~idE~~~~~~~~p~~~~~~lA~~KA~-------~v~~~~~~~~~lvI~aDTvV 74 (192)
T PRK00078 5 LASASERRQELLKRI---LEDFQVIVSDFDESSVPFKGNIESYVMNLAEGKAR-------SVSKKLDQESSIVIGCDTIV 74 (192)
T ss_pred EeCCCHHHHHHHHhC---CCCeEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHhcCCCCCEEEEeCeEE
Confidence 44444443 445443 889998754 44322 2345677777754211 12111112246999999976
Q ss_pred -cCCceecccchHHHH
Q 008627 535 -SNGTVCSRVGTACVA 549 (559)
Q Consensus 535 -aNGsVvNKvGT~~IA 549 (559)
-||.++.|-.+..=|
T Consensus 75 ~~~g~ilgKP~~~eeA 90 (192)
T PRK00078 75 AFNGKVLGKPKDEEDA 90 (192)
T ss_pred EECCEEeCCCCCHHHH
Confidence 788888887776554
Done!