Query 008627
Match_columns 559
No_of_seqs 275 out of 1295
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 07:58:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008627.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008627hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a11_A Translation initiation 100.0 1.6E-50 5.5E-55 419.1 28.6 227 328-559 19-246 (338)
2 2a0u_A Initiation factor 2B; S 100.0 2.9E-47 1E-51 400.3 26.6 225 330-559 46-293 (383)
3 2yvk_A Methylthioribose-1-phos 100.0 2.9E-47 9.9E-52 399.3 26.3 222 330-559 57-289 (374)
4 1vb5_A Translation initiation 100.0 1.7E-47 5.8E-52 386.3 23.4 213 328-559 2-214 (276)
5 1t5o_A EIF2BD, translation ini 100.0 5.2E-47 1.8E-51 394.6 26.6 221 330-559 30-261 (351)
6 1t9k_A Probable methylthioribo 100.0 1.4E-46 4.8E-51 390.9 24.9 219 330-559 35-264 (347)
7 3ecs_A Translation initiation 100.0 4.6E-45 1.6E-49 375.1 18.9 207 347-559 19-226 (315)
8 1w2w_B 5-methylthioribose-1-ph 99.9 7.2E-26 2.5E-30 218.1 6.9 82 478-559 2-88 (191)
9 1w2w_A 5-methylthioribose-1-ph 99.8 4.3E-18 1.5E-22 166.4 13.3 148 331-482 37-209 (211)
10 1uj6_A Ribose 5-phosphate isom 97.4 0.00054 1.9E-08 67.4 10.0 99 440-553 8-113 (227)
11 1m0s_A Ribose-5-phosphate isom 96.9 0.0015 5.1E-08 64.0 7.6 92 440-544 6-97 (219)
12 2f8m_A Ribose 5-phosphate isom 96.9 0.0014 4.8E-08 65.3 7.3 96 438-547 10-111 (244)
13 1lk5_A D-ribose-5-phosphate is 96.8 0.0035 1.2E-07 61.8 9.4 92 440-545 6-102 (229)
14 3kwm_A Ribose-5-phosphate isom 96.7 0.0028 9.6E-08 62.4 7.2 92 440-544 12-103 (224)
15 3l7o_A Ribose-5-phosphate isom 96.3 0.0069 2.4E-07 59.7 7.6 92 440-545 4-99 (225)
16 1xtz_A Ribose-5-phosphate isom 96.2 0.0072 2.5E-07 60.9 6.8 93 440-546 21-125 (264)
17 2pjm_A Ribose-5-phosphate isom 96.2 0.026 9E-07 55.6 10.6 90 440-544 6-100 (226)
18 1o8b_A Ribose 5-phosphate isom 96.0 0.0011 3.9E-08 64.9 0.3 92 440-544 6-97 (219)
19 3hhe_A Ribose-5-phosphate isom 96.0 0.011 3.7E-07 59.4 7.2 88 440-541 27-117 (255)
20 3uw1_A Ribose-5-phosphate isom 95.2 0.03 1E-06 55.7 6.7 89 440-541 14-106 (239)
21 4gmk_A Ribose-5-phosphate isom 83.8 4.7 0.00016 39.8 9.6 91 440-544 7-101 (228)
22 3g0t_A Putative aminotransfera 78.0 11 0.00037 37.9 10.2 103 452-559 103-218 (437)
23 1jeo_A MJ1247, hypothetical pr 77.7 18 0.00061 32.4 10.7 37 493-530 97-133 (180)
24 3i6i_A Putative leucoanthocyan 77.3 6.1 0.00021 39.0 8.1 96 456-558 11-113 (346)
25 1vim_A Hypothetical protein AF 72.4 28 0.00096 32.1 10.8 37 493-529 104-140 (200)
26 3rrl_A Succinyl-COA:3-ketoacid 72.0 8.1 0.00028 37.9 7.3 22 522-543 151-172 (235)
27 2o8r_A Polyphosphate kinase; s 71.9 4.2 0.00015 46.1 5.9 48 465-512 384-433 (705)
28 4e4t_A Phosphoribosylaminoimid 71.4 3.8 0.00013 42.8 5.0 77 451-533 31-107 (419)
29 2yv1_A Succinyl-COA ligase [AD 70.6 6.6 0.00023 39.4 6.4 102 455-558 71-176 (294)
30 3sho_A Transcriptional regulat 70.4 43 0.0015 30.0 11.3 38 493-530 102-139 (187)
31 3ixq_A Ribose-5-phosphate isom 69.6 7.8 0.00027 38.1 6.5 82 441-535 7-90 (226)
32 3e8x_A Putative NAD-dependent 69.1 9 0.00031 35.5 6.6 96 454-557 20-123 (236)
33 1oi7_A Succinyl-COA synthetase 68.8 7.3 0.00025 39.0 6.3 102 454-557 64-169 (288)
34 1m3s_A Hypothetical protein YC 67.5 35 0.0012 30.6 10.1 37 493-529 94-130 (186)
35 1qyd_A Pinoresinol-lariciresin 67.4 14 0.00049 35.4 7.9 98 456-558 5-110 (313)
36 3ilh_A Two component response 66.3 4.5 0.00015 33.6 3.6 57 457-513 37-100 (146)
37 3h14_A Aminotransferase, class 65.6 27 0.00092 34.5 9.7 101 452-559 89-197 (391)
38 4dq6_A Putative pyridoxal phos 65.5 20 0.00067 35.1 8.6 100 453-559 89-200 (391)
39 2gas_A Isoflavone reductase; N 65.2 16 0.00056 34.8 7.8 93 455-556 2-103 (307)
40 3ic5_A Putative saccharopine d 64.9 42 0.0014 26.9 9.2 88 455-558 5-95 (118)
41 3dqp_A Oxidoreductase YLBE; al 64.3 14 0.0005 33.6 7.0 93 457-558 2-99 (219)
42 1k6d_A Acetate COA-transferase 63.8 20 0.00067 34.4 8.0 32 522-553 148-183 (220)
43 1qz9_A Kynureninase; kynurenin 63.5 28 0.00096 34.5 9.4 99 455-559 89-198 (416)
44 1x92_A APC5045, phosphoheptose 62.1 92 0.0031 28.2 12.2 38 493-530 128-168 (199)
45 2r6j_A Eugenol synthase 1; phe 61.7 14 0.00049 35.7 6.7 90 457-556 13-106 (318)
46 2w48_A Sorbitol operon regulat 61.6 11 0.00036 37.8 5.9 90 442-532 93-214 (315)
47 2yv2_A Succinyl-COA synthetase 61.5 10 0.00035 38.0 5.8 101 455-557 72-176 (297)
48 3c85_A Putative glutathione-re 60.9 32 0.0011 30.7 8.5 69 455-530 39-113 (183)
49 3q2o_A Phosphoribosylaminoimid 60.4 2.6 9E-05 42.9 1.2 76 451-532 10-85 (389)
50 2nu8_A Succinyl-COA ligase [AD 60.0 11 0.00037 37.6 5.6 101 455-557 65-169 (288)
51 2yvq_A Carbamoyl-phosphate syn 60.0 34 0.0011 30.6 8.4 91 453-559 24-128 (143)
52 1jw9_B Molybdopterin biosynthe 59.6 22 0.00076 34.4 7.6 105 444-559 21-149 (249)
53 1t3i_A Probable cysteine desul 59.4 1.1E+02 0.0038 29.9 12.9 100 455-559 91-202 (420)
54 2yva_A DNAA initiator-associat 59.3 1E+02 0.0034 27.8 12.6 37 493-529 124-163 (196)
55 3ruf_A WBGU; rossmann fold, UD 58.9 38 0.0013 33.0 9.3 101 454-557 24-143 (351)
56 1eg5_A Aminotransferase; PLP-d 58.1 1.3E+02 0.0044 28.9 12.9 96 455-558 62-173 (384)
57 4eb5_A Probable cysteine desul 57.9 1.4E+02 0.0047 28.8 13.6 96 455-557 61-169 (382)
58 2xhz_A KDSD, YRBH, arabinose 5 57.7 48 0.0016 29.6 9.1 39 492-530 110-148 (183)
59 3llv_A Exopolyphosphatase-rela 56.8 45 0.0016 28.3 8.4 85 455-556 6-95 (141)
60 1qg8_A Protein (spore coat pol 56.5 24 0.00084 32.5 7.1 55 457-512 6-61 (255)
61 4ds3_A Phosphoribosylglycinami 55.7 25 0.00086 33.8 7.1 70 457-530 11-94 (209)
62 3c1o_A Eugenol synthase; pheny 55.6 29 0.00099 33.4 7.7 92 456-556 5-104 (321)
63 2oas_A ATOA, 4-hydroxybutyrate 55.2 9.3 0.00032 40.6 4.4 98 445-542 9-130 (436)
64 4egb_A DTDP-glucose 4,6-dehydr 55.1 16 0.00056 35.5 5.9 104 454-558 23-142 (346)
65 3qli_A Coenzyme A transferase; 54.9 14 0.00048 39.8 5.7 96 445-541 29-159 (455)
66 2fp4_A Succinyl-COA ligase [GD 54.9 17 0.00057 36.7 6.0 101 455-557 72-177 (305)
67 1svv_A Threonine aldolase; str 54.8 14 0.00049 35.5 5.3 99 454-558 66-179 (359)
68 3kcn_A Adenylate cyclase homol 54.8 8.4 0.00029 32.7 3.3 56 454-513 26-84 (151)
69 3orq_A N5-carboxyaminoimidazol 54.6 7 0.00024 39.9 3.2 71 451-531 8-82 (377)
70 1qyc_A Phenylcoumaran benzylic 54.5 28 0.00095 33.2 7.3 93 455-556 4-104 (308)
71 3hdj_A Probable ornithine cycl 54.1 46 0.0016 33.5 9.2 87 454-546 120-215 (313)
72 3cdk_A Succinyl-COA:3-ketoacid 54.0 36 0.0012 33.2 8.1 32 522-553 151-186 (241)
73 1zud_1 Adenylyltransferase THI 53.9 50 0.0017 31.9 9.1 105 444-559 18-146 (251)
74 1nri_A Hypothetical protein HI 53.9 1.6E+02 0.0054 29.2 13.0 56 492-549 154-212 (306)
75 2nvv_A Acetyl-COA hydrolase/tr 53.3 31 0.0011 37.4 8.2 96 446-542 9-139 (506)
76 1kmj_A Selenocysteine lyase; p 53.2 1.7E+02 0.0057 28.4 13.7 100 455-559 86-197 (406)
77 3fwk_A FMN adenylyltransferase 52.6 1.3E+02 0.0044 30.7 12.2 131 395-533 4-171 (308)
78 1byr_A Protein (endonuclease); 52.4 55 0.0019 28.2 8.3 55 458-512 32-88 (155)
79 2g39_A Acetyl-COA hydrolase; c 51.7 41 0.0014 36.4 8.8 95 446-542 19-144 (497)
80 1xr4_A Putative citrate lyase 51.2 46 0.0016 36.1 9.1 96 446-541 50-177 (509)
81 4ggj_A Mitochondrial cardiolip 51.0 22 0.00075 33.2 5.8 55 458-513 64-119 (196)
82 2h1q_A Hypothetical protein; Z 50.6 11 0.00038 37.8 3.8 63 453-538 139-201 (270)
83 3cai_A Possible aminotransfera 50.3 93 0.0032 30.6 10.6 98 455-559 87-198 (406)
84 3etn_A Putative phosphosugar i 50.2 53 0.0018 30.9 8.4 37 493-529 121-159 (220)
85 3vax_A Putative uncharacterize 49.8 1.9E+02 0.0066 28.1 13.7 99 455-559 81-192 (400)
86 2dr1_A PH1308 protein, 386AA l 49.6 76 0.0026 30.7 9.7 95 457-559 74-179 (386)
87 3kax_A Aminotransferase, class 48.9 48 0.0016 32.2 8.1 99 453-558 81-191 (383)
88 3tqr_A Phosphoribosylglycinami 48.8 45 0.0015 32.1 7.7 69 458-530 10-91 (215)
89 2huf_A Alanine glyoxylate amin 48.6 58 0.002 31.8 8.7 94 457-558 73-176 (393)
90 2bfw_A GLGA glycogen synthase; 48.6 46 0.0016 29.2 7.3 78 452-530 33-123 (200)
91 3fxa_A SIS domain protein; str 48.5 82 0.0028 28.6 9.2 38 493-530 107-144 (201)
92 3lk7_A UDP-N-acetylmuramoylala 48.1 43 0.0015 35.0 8.0 90 455-559 9-99 (451)
93 2hj0_A Putative citrate lyase, 48.0 43 0.0015 36.4 8.3 95 446-541 53-180 (519)
94 2z61_A Probable aspartate amin 47.9 53 0.0018 32.0 8.3 95 453-558 88-185 (370)
95 3dzz_A Putative pyridoxal 5'-p 47.9 55 0.0019 31.9 8.4 99 454-559 85-196 (391)
96 2hq1_A Glucose/ribitol dehydro 47.3 1E+02 0.0035 28.2 9.8 76 454-531 4-92 (247)
97 3l8a_A METC, putative aminotra 47.3 98 0.0034 31.0 10.4 98 454-558 119-229 (421)
98 3isl_A Purine catabolism prote 47.3 1.6E+02 0.0054 28.8 11.7 87 465-559 73-169 (416)
99 3ps9_A TRNA 5-methylaminomethy 47.2 34 0.0012 37.4 7.4 68 444-513 201-303 (676)
100 1y8q_A Ubiquitin-like 1 activa 47.0 2E+02 0.0068 29.2 12.7 105 444-559 26-153 (346)
101 3l9w_A Glutathione-regulated p 46.9 47 0.0016 34.8 8.1 86 455-557 4-94 (413)
102 3nhm_A Response regulator; pro 46.8 71 0.0024 25.8 7.8 56 454-514 26-86 (133)
103 2xbl_A Phosphoheptose isomeras 46.6 1.6E+02 0.0055 26.3 12.3 38 492-529 130-167 (198)
104 3two_A Mannitol dehydrogenase; 46.6 52 0.0018 32.6 8.1 53 451-510 173-225 (348)
105 3cvj_A Putative phosphoheptose 46.5 1.3E+02 0.0043 28.4 10.5 38 491-528 121-169 (243)
106 3fdb_A Beta C-S lyase, putativ 46.3 56 0.0019 31.7 8.2 101 452-559 79-186 (377)
107 2wsi_A FAD synthetase; transfe 45.7 1.3E+02 0.0045 30.0 10.9 98 435-532 32-167 (306)
108 3ezs_A Aminotransferase ASPB; 45.7 91 0.0031 30.3 9.6 102 453-559 81-190 (376)
109 1yaa_A Aspartate aminotransfer 44.8 1.1E+02 0.0036 30.5 10.0 99 454-558 96-211 (412)
110 3lvm_A Cysteine desulfurase; s 44.7 1.5E+02 0.0052 29.2 11.2 100 455-559 86-196 (423)
111 1lss_A TRK system potassium up 44.6 78 0.0027 26.1 7.8 68 456-531 5-78 (140)
112 3kcq_A Phosphoribosylglycinami 44.2 34 0.0012 33.0 6.1 71 457-531 12-91 (215)
113 3hgm_A Universal stress protei 43.9 1.4E+02 0.0047 24.8 9.8 58 498-559 76-144 (147)
114 3zrp_A Serine-pyruvate aminotr 43.6 18 0.00061 35.1 4.1 95 456-558 56-159 (384)
115 3rht_A (gatase1)-like protein; 43.4 17 0.00059 36.0 3.9 48 482-529 6-57 (259)
116 4gqb_A Protein arginine N-meth 43.4 45 0.0015 37.3 7.6 69 456-527 359-433 (637)
117 3trj_A Phosphoheptose isomeras 43.4 2E+02 0.0069 26.5 12.3 37 492-528 128-167 (201)
118 4eu9_A Succinyl-COA:acetate co 43.1 75 0.0026 34.3 9.2 95 445-540 17-146 (514)
119 2zc0_A Alanine glyoxylate tran 42.6 69 0.0024 31.6 8.3 53 454-512 98-150 (407)
120 3tqh_A Quinone oxidoreductase; 42.5 40 0.0014 33.1 6.4 69 451-527 149-220 (321)
121 3kgw_A Alanine-glyoxylate amin 41.8 55 0.0019 31.7 7.3 95 457-559 77-181 (393)
122 3k5i_A Phosphoribosyl-aminoimi 41.5 12 0.00041 38.6 2.5 78 451-533 20-97 (403)
123 1iz0_A Quinone oxidoreductase; 41.3 81 0.0028 30.5 8.4 70 452-528 123-195 (302)
124 2x5d_A Probable aminotransfera 41.3 73 0.0025 31.7 8.2 97 455-558 100-207 (412)
125 1jkx_A GART;, phosphoribosylgl 40.7 68 0.0023 30.6 7.5 71 457-531 4-88 (212)
126 3dfz_A SIRC, precorrin-2 dehyd 40.4 34 0.0012 33.1 5.4 89 454-559 30-118 (223)
127 3jvi_A Protein tyrosine phosph 40.3 30 0.001 31.6 4.7 68 462-529 16-90 (161)
128 1vjo_A Alanine--glyoxylate ami 40.2 58 0.002 31.9 7.2 95 456-558 87-191 (393)
129 3npg_A Uncharacterized DUF364 40.0 18 0.00061 35.7 3.4 66 453-538 114-179 (249)
130 3fwz_A Inner membrane protein 40.0 81 0.0028 27.0 7.3 67 456-530 8-79 (140)
131 1elu_A L-cysteine/L-cystine C- 40.0 1.7E+02 0.0059 28.2 10.6 96 455-558 77-190 (390)
132 1c7n_A Cystalysin; transferase 39.9 1E+02 0.0034 30.3 8.9 99 454-559 89-200 (399)
133 3s3t_A Nucleotide-binding prot 39.8 1.5E+02 0.0051 24.6 8.9 57 499-559 76-142 (146)
134 2q7w_A Aspartate aminotransfer 39.6 1.6E+02 0.0054 28.7 10.3 101 454-558 92-207 (396)
135 3fbg_A Putative arginate lyase 39.5 76 0.0026 31.5 8.0 44 454-501 150-194 (346)
136 1lc5_A COBD, L-threonine-O-3-p 39.4 1.2E+02 0.0041 29.4 9.4 96 455-559 77-182 (364)
137 2ahu_A Putative enzyme YDIF; C 39.4 2.2E+02 0.0075 30.9 12.2 33 522-554 180-217 (531)
138 3f9t_A TDC, L-tyrosine decarbo 39.1 1.7E+02 0.0058 28.1 10.3 98 454-559 86-204 (397)
139 2z9v_A Aspartate aminotransfer 38.6 1.3E+02 0.0045 29.2 9.5 97 455-559 60-167 (392)
140 3dyd_A Tyrosine aminotransfera 38.5 89 0.003 31.5 8.5 101 452-559 116-227 (427)
141 3hdv_A Response regulator; PSI 38.2 18 0.0006 29.8 2.6 55 455-513 31-89 (136)
142 2i2w_A Phosphoheptose isomeras 38.2 2.4E+02 0.0082 25.9 14.0 36 493-528 146-181 (212)
143 1vp4_A Aminotransferase, putat 38.2 1E+02 0.0035 30.9 8.8 101 453-559 108-224 (425)
144 1piw_A Hypothetical zinc-type 38.0 84 0.0029 31.3 8.1 52 451-509 176-227 (360)
145 2e7j_A SEP-tRNA:Cys-tRNA synth 37.7 1.7E+02 0.0059 28.1 10.1 95 456-559 71-180 (371)
146 4id9_A Short-chain dehydrogena 37.6 63 0.0022 31.3 6.9 90 455-557 19-118 (347)
147 2wm3_A NMRA-like family domain 37.6 71 0.0024 30.4 7.2 99 455-557 5-107 (299)
148 4ffl_A PYLC; amino acid, biosy 37.6 48 0.0016 33.0 6.2 68 456-533 2-74 (363)
149 4eye_A Probable oxidoreductase 37.5 94 0.0032 30.8 8.3 47 451-501 156-203 (342)
150 2bkw_A Alanine-glyoxylate amin 37.3 1.3E+02 0.0044 29.0 9.1 96 455-558 60-171 (385)
151 4gx0_A TRKA domain protein; me 37.2 25 0.00084 37.7 4.2 102 446-558 314-435 (565)
152 3da8_A Probable 5'-phosphoribo 37.2 55 0.0019 31.5 6.3 69 458-530 17-97 (215)
153 2ay1_A Aroat, aromatic amino a 37.1 1.5E+02 0.0051 29.0 9.7 99 454-558 89-204 (394)
154 2r5f_A Transcriptional regulat 37.0 75 0.0026 31.0 7.4 101 443-545 46-174 (264)
155 1u2p_A Ptpase, low molecular w 36.8 34 0.0012 31.1 4.5 66 462-529 16-89 (163)
156 4f4e_A Aromatic-amino-acid ami 36.7 1.7E+02 0.0057 29.2 10.1 97 456-558 119-230 (420)
157 3gk7_A 4-hydroxybutyrate COA-t 36.7 60 0.0021 34.7 7.0 94 446-541 15-134 (448)
158 1xq6_A Unknown protein; struct 36.5 1.1E+02 0.0038 27.6 8.1 98 454-557 3-125 (253)
159 3jtx_A Aminotransferase; NP_28 36.3 85 0.0029 30.7 7.7 103 452-559 88-204 (396)
160 2hmt_A YUAA protein; RCK, KTN, 36.2 88 0.003 25.8 6.8 87 455-557 6-97 (144)
161 2dou_A Probable N-succinyldiam 36.1 1.6E+02 0.0053 28.7 9.6 97 456-559 89-194 (376)
162 1orr_A CDP-tyvelose-2-epimeras 36.0 30 0.001 33.4 4.3 98 457-557 3-116 (347)
163 3acz_A Methionine gamma-lyase; 36.0 84 0.0029 31.4 7.8 96 456-559 76-177 (389)
164 3ua3_A Protein arginine N-meth 35.9 1E+02 0.0035 35.3 9.0 85 441-527 393-500 (745)
165 3jyo_A Quinate/shikimate dehyd 35.9 1.2E+02 0.0043 29.9 8.9 73 454-528 126-200 (283)
166 1d2f_A MALY protein; aminotran 35.8 1.2E+02 0.0041 29.7 8.7 99 454-559 87-198 (390)
167 3qhx_A Cystathionine gamma-syn 35.8 80 0.0027 31.8 7.6 95 456-559 83-184 (392)
168 1tk9_A Phosphoheptose isomeras 35.6 2.3E+02 0.0079 25.0 11.5 41 488-528 120-160 (188)
169 3mad_A Sphingosine-1-phosphate 35.5 85 0.0029 32.7 7.9 95 458-559 164-272 (514)
170 1m32_A 2-aminoethylphosphonate 35.5 72 0.0025 30.5 6.9 96 456-559 58-164 (366)
171 1sb8_A WBPP; epimerase, 4-epim 35.1 1.5E+02 0.005 28.9 9.2 103 454-558 26-146 (352)
172 2yrr_A Aminotransferase, class 34.8 71 0.0024 30.3 6.7 94 456-559 54-157 (353)
173 3bcv_A Putative glycosyltransf 34.7 62 0.0021 29.3 6.0 16 522-537 113-128 (240)
174 1ajs_A Aspartate aminotransfer 34.3 1.8E+02 0.0061 28.7 9.8 102 453-558 96-218 (412)
175 1d1q_A Tyrosine phosphatase (E 34.2 40 0.0014 30.6 4.5 68 462-530 19-95 (161)
176 2g1u_A Hypothetical protein TM 34.2 64 0.0022 28.1 5.8 71 453-531 17-93 (155)
177 2o0m_A Transcriptional regulat 34.0 52 0.0018 33.3 5.8 90 443-533 126-246 (345)
178 3st7_A Capsular polysaccharide 34.0 78 0.0027 31.3 7.0 44 515-558 39-86 (369)
179 2r25_B Osmosensing histidine p 33.7 81 0.0028 25.9 6.1 57 457-513 29-89 (133)
180 3eag_A UDP-N-acetylmuramate:L- 33.6 1.6E+02 0.0055 29.2 9.3 87 456-559 5-93 (326)
181 3mhs_B Protein SUS1; multi-pro 33.6 2.2E+02 0.0075 24.2 8.8 55 376-435 37-91 (96)
182 3s2u_A UDP-N-acetylglucosamine 33.5 1.9E+02 0.0063 28.9 9.8 71 455-527 180-257 (365)
183 2fq6_A Cystathionine beta-lyas 33.3 93 0.0032 32.0 7.7 73 481-559 122-202 (415)
184 1bw0_A TAT, protein (tyrosine 33.2 1.4E+02 0.0048 29.5 8.8 101 453-559 103-213 (416)
185 1gu7_A Enoyl-[acyl-carrier-pro 33.2 1.2E+02 0.0042 30.0 8.4 39 451-491 163-203 (364)
186 3dhn_A NAD-dependent epimerase 33.1 77 0.0026 28.6 6.3 92 456-557 5-104 (227)
187 7aat_A Aspartate aminotransfer 33.1 1.9E+02 0.0064 28.4 9.7 53 454-512 94-151 (401)
188 2zyj_A Alpha-aminodipate amino 33.1 1.3E+02 0.0043 29.7 8.4 101 453-559 90-199 (397)
189 2r85_A PURP protein PF1517; AT 33.0 83 0.0028 30.3 6.9 20 493-512 12-31 (334)
190 3ftb_A Histidinol-phosphate am 32.9 91 0.0031 30.0 7.2 96 453-559 77-180 (361)
191 2ord_A Acoat, acetylornithine 32.7 1.2E+02 0.004 30.0 8.1 35 452-487 95-135 (397)
192 2ctz_A O-acetyl-L-homoserine s 32.6 1.3E+02 0.0043 30.6 8.5 96 456-559 75-177 (421)
193 3ly1_A Putative histidinol-pho 32.2 1E+02 0.0036 29.6 7.5 54 454-513 68-121 (354)
194 3auf_A Glycinamide ribonucleot 32.2 1.1E+02 0.0037 29.7 7.5 75 457-534 24-114 (229)
195 4gek_A TRNA (CMO5U34)-methyltr 32.2 1.7E+02 0.0058 28.1 9.0 85 441-528 57-145 (261)
196 4ej6_A Putative zinc-binding d 32.0 1.3E+02 0.0046 30.1 8.5 54 451-510 179-232 (370)
197 3fsl_A Aromatic-amino-acid ami 31.8 3.2E+02 0.011 26.6 11.0 97 456-558 97-208 (397)
198 3eh7_A 4-hydroxybutyrate COA-t 31.8 47 0.0016 35.3 5.2 95 446-541 19-138 (434)
199 2ch1_A 3-hydroxykynurenine tra 31.8 98 0.0033 30.2 7.3 95 456-558 71-175 (396)
200 3jte_A Response regulator rece 31.8 24 0.00083 29.2 2.5 56 455-513 27-85 (143)
201 1wv2_A Thiazole moeity, thiazo 31.7 1.5E+02 0.005 29.9 8.4 108 448-559 65-190 (265)
202 2gn4_A FLAA1 protein, UDP-GLCN 31.7 95 0.0033 30.7 7.2 102 453-557 19-134 (344)
203 1qgn_A Protein (cystathionine 31.5 1.5E+02 0.0052 30.9 9.1 96 456-559 131-233 (445)
204 4da9_A Short-chain dehydrogena 31.5 2E+02 0.0068 27.5 9.3 76 454-531 28-116 (280)
205 3nnk_A Ureidoglycine-glyoxylat 31.5 76 0.0026 31.1 6.4 93 459-559 69-171 (411)
206 3gpi_A NAD-dependent epimerase 31.4 56 0.0019 30.9 5.3 91 456-558 4-102 (286)
207 3edm_A Short chain dehydrogena 31.2 2.3E+02 0.008 26.5 9.7 77 454-532 7-96 (259)
208 2okj_A Glutamate decarboxylase 31.2 2.4E+02 0.0083 29.1 10.6 101 454-559 151-278 (504)
209 1ek6_A UDP-galactose 4-epimera 31.2 1.8E+02 0.0063 27.9 9.1 100 456-557 3-124 (348)
210 3ele_A Amino transferase; RER0 31.1 2E+02 0.0068 28.1 9.5 101 452-558 97-213 (398)
211 1u08_A Hypothetical aminotrans 31.0 2.2E+02 0.0075 27.7 9.7 99 453-558 89-198 (386)
212 2cwd_A Low molecular weight ph 31.0 37 0.0013 30.9 3.8 69 462-531 16-92 (161)
213 2cb1_A O-acetyl homoserine sul 30.9 79 0.0027 31.9 6.6 96 456-559 73-173 (412)
214 3l5o_A Uncharacterized protein 30.6 34 0.0012 34.3 3.7 60 453-534 139-198 (270)
215 3nra_A Aspartate aminotransfer 30.5 1.1E+02 0.0039 29.9 7.5 97 455-558 103-214 (407)
216 4b4o_A Epimerase family protei 30.5 1.1E+02 0.0037 29.1 7.2 18 541-558 82-99 (298)
217 1e3j_A NADP(H)-dependent ketos 30.5 1.3E+02 0.0044 29.8 8.0 53 451-510 165-217 (352)
218 2ri0_A Glucosamine-6-phosphate 30.3 1.6E+02 0.0056 27.6 8.3 80 455-538 29-131 (234)
219 1n8p_A Cystathionine gamma-lya 30.3 98 0.0033 31.2 7.2 95 456-559 72-175 (393)
220 2fzw_A Alcohol dehydrogenase c 30.2 1.6E+02 0.0054 29.3 8.6 48 451-501 187-234 (373)
221 3ew7_A LMO0794 protein; Q8Y8U8 30.1 1.5E+02 0.0052 26.3 7.8 91 457-557 2-95 (221)
222 1j32_A Aspartate aminotransfer 30.1 1.2E+02 0.0043 29.5 7.7 99 453-558 89-198 (388)
223 1uuf_A YAHK, zinc-type alcohol 30.1 1.1E+02 0.0036 30.9 7.4 47 451-501 191-237 (369)
224 2qbu_A Precorrin-2 methyltrans 29.8 1.3E+02 0.0043 28.1 7.4 46 475-521 91-139 (232)
225 1ja9_A 4HNR, 1,3,6,8-tetrahydr 29.6 1.6E+02 0.0056 27.2 8.2 75 454-530 20-107 (274)
226 3v2g_A 3-oxoacyl-[acyl-carrier 29.5 2E+02 0.007 27.3 9.0 76 454-531 30-118 (271)
227 3ip1_A Alcohol dehydrogenase, 29.5 1.6E+02 0.0054 29.9 8.6 48 451-501 210-257 (404)
228 3pvc_A TRNA 5-methylaminomethy 29.4 71 0.0024 35.1 6.3 63 449-513 198-295 (689)
229 2rfv_A Methionine gamma-lyase; 29.4 1.6E+02 0.0055 29.2 8.5 96 456-559 81-182 (398)
230 1iay_A ACC synthase 2, 1-amino 29.3 1.6E+02 0.0054 29.4 8.5 101 452-559 106-224 (428)
231 3heb_A Response regulator rece 29.1 91 0.0031 26.0 5.7 59 457-515 32-99 (152)
232 1omo_A Alanine dehydrogenase; 29.0 2.8E+02 0.0097 27.6 10.3 89 453-546 123-219 (322)
233 3asa_A LL-diaminopimelate amin 29.0 1.8E+02 0.006 28.8 8.7 98 453-558 94-198 (400)
234 3m2p_A UDP-N-acetylglucosamine 29.0 1.6E+02 0.0056 27.9 8.2 93 456-558 3-102 (311)
235 3afn_B Carbonyl reductase; alp 28.8 2.4E+02 0.0081 25.8 9.1 76 454-531 6-94 (258)
236 3ab8_A Putative uncharacterize 28.8 2E+02 0.0068 26.7 8.6 74 457-530 157-242 (268)
237 3cg4_A Response regulator rece 28.8 1.2E+02 0.0043 24.6 6.4 54 455-513 31-89 (142)
238 3kkj_A Amine oxidase, flavin-c 28.7 32 0.0011 29.8 2.8 30 481-512 3-32 (336)
239 3icc_A Putative 3-oxoacyl-(acy 28.6 1.9E+02 0.0066 26.5 8.4 57 454-512 6-63 (255)
240 1yiz_A Kynurenine aminotransfe 28.6 1.9E+02 0.0064 28.8 8.9 99 453-558 99-217 (429)
241 1tt5_A APPBP1, amyloid protein 28.6 3.8E+02 0.013 29.0 11.8 105 444-559 22-152 (531)
242 2jhf_A Alcohol dehydrogenase E 28.5 2E+02 0.0067 28.7 9.0 40 451-491 188-227 (374)
243 3r5x_A D-alanine--D-alanine li 28.5 43 0.0015 32.2 4.0 42 493-534 23-67 (307)
244 3ke3_A Putative serine-pyruvat 28.4 3.6E+02 0.012 26.5 10.8 98 456-559 53-171 (379)
245 3av3_A Phosphoribosylglycinami 28.4 1.4E+02 0.005 28.2 7.6 71 457-530 7-90 (212)
246 1oc2_A DTDP-glucose 4,6-dehydr 28.3 30 0.001 33.6 2.8 100 456-557 5-118 (348)
247 2q2v_A Beta-D-hydroxybutyrate 28.3 2.7E+02 0.0093 25.8 9.5 71 455-530 4-87 (255)
248 1p0f_A NADP-dependent alcohol 28.3 2E+02 0.0067 28.7 9.0 40 451-491 188-227 (373)
249 1meo_A Phosophoribosylglycinam 28.3 1.3E+02 0.0043 28.7 7.1 69 458-530 5-87 (209)
250 3ndn_A O-succinylhomoserine su 28.2 1.2E+02 0.0041 31.0 7.5 96 456-559 98-199 (414)
251 1b93_A Protein (methylglyoxal 28.2 2.1E+02 0.0073 26.2 8.3 69 480-559 39-116 (152)
252 3idf_A USP-like protein; unive 28.2 1.3E+02 0.0046 24.7 6.6 34 499-532 73-111 (138)
253 1e3i_A Alcohol dehydrogenase, 28.1 1.7E+02 0.0058 29.2 8.4 40 451-491 192-231 (376)
254 3ijr_A Oxidoreductase, short c 28.1 3E+02 0.01 26.4 10.0 98 454-553 46-169 (291)
255 3grc_A Sensor protein, kinase; 27.9 62 0.0021 26.5 4.4 56 455-515 30-90 (140)
256 3b46_A Aminotransferase BNA3; 27.9 1.4E+02 0.0048 30.3 7.9 97 455-558 119-236 (447)
257 3fpf_A Mtnas, putative unchara 27.9 4.8E+02 0.016 26.2 12.3 75 451-530 119-196 (298)
258 2lpm_A Two-component response 27.8 35 0.0012 29.7 2.9 42 469-512 44-86 (123)
259 3nyi_A FAT acid-binding protei 27.8 1.2E+02 0.004 30.4 7.1 58 450-507 79-147 (297)
260 2aef_A Calcium-gated potassium 27.8 89 0.003 29.0 5.9 84 455-557 9-97 (234)
261 2jl1_A Triphenylmethane reduct 27.6 1.2E+02 0.004 28.4 6.8 94 457-557 2-99 (287)
262 1fc4_A 2-amino-3-ketobutyrate 27.5 2.3E+02 0.008 27.6 9.2 94 456-559 107-210 (401)
263 2dgk_A GAD-beta, GADB, glutama 27.4 4.2E+02 0.014 26.7 11.4 91 457-555 106-216 (452)
264 2cf5_A Atccad5, CAD, cinnamyl 27.4 1.7E+02 0.0059 29.0 8.3 38 452-491 177-215 (357)
265 2y6x_A PSB27, photosystem II 1 27.3 3.2E+02 0.011 24.1 9.2 78 351-431 16-102 (113)
266 4hvk_A Probable cysteine desul 27.3 4.1E+02 0.014 25.2 14.2 95 456-557 62-169 (382)
267 2pb2_A Acetylornithine/succiny 27.2 2E+02 0.0068 29.0 8.8 101 455-559 115-238 (420)
268 1e5e_A MGL, methionine gamma-l 27.2 2.8E+02 0.0097 27.8 10.0 96 456-559 79-181 (404)
269 3p9x_A Phosphoribosylglycinami 27.2 1.2E+02 0.0042 29.0 6.9 74 457-534 6-94 (211)
270 1pl8_A Human sorbitol dehydrog 27.0 2.1E+02 0.007 28.4 8.8 54 451-510 168-221 (356)
271 1v2d_A Glutamine aminotransfer 26.9 1.9E+02 0.0064 28.2 8.4 98 455-559 79-188 (381)
272 1o1y_A Conserved hypothetical 26.8 55 0.0019 31.3 4.4 52 479-530 11-65 (239)
273 3gt7_A Sensor protein; structu 26.7 1.6E+02 0.0056 24.7 7.0 54 455-513 31-89 (154)
274 2zcu_A Uncharacterized oxidore 26.7 1.4E+02 0.0049 27.7 7.2 93 457-558 1-97 (286)
275 3d3u_A 4-hydroxybutyrate COA-t 26.6 64 0.0022 34.0 5.2 96 445-541 14-135 (439)
276 3rui_A Ubiquitin-like modifier 26.5 4E+02 0.014 27.3 11.0 99 450-559 30-167 (340)
277 4dik_A Flavoprotein; TM0755, e 26.5 3.6E+02 0.012 28.0 10.8 128 423-553 200-348 (410)
278 3n53_A Response regulator rece 26.3 44 0.0015 27.5 3.2 36 480-515 46-86 (140)
279 3g7q_A Valine-pyruvate aminotr 26.3 97 0.0033 30.6 6.2 105 452-559 96-216 (417)
280 1b5p_A Protein (aspartate amin 26.2 2.2E+02 0.0075 27.9 8.8 98 454-558 91-199 (385)
281 4dqv_A Probable peptide synthe 26.1 1.1E+02 0.0037 31.9 6.8 103 453-557 71-206 (478)
282 3oid_A Enoyl-[acyl-carrier-pro 26.1 2.2E+02 0.0074 26.8 8.4 76 454-531 3-91 (258)
283 1bs0_A Protein (8-amino-7-oxon 26.1 4.4E+02 0.015 25.4 10.9 95 456-559 101-201 (384)
284 3ezl_A Acetoacetyl-COA reducta 26.1 2.1E+02 0.0071 26.5 8.2 76 454-531 12-100 (256)
285 1gy8_A UDP-galactose 4-epimera 26.1 1.9E+02 0.0066 28.4 8.4 101 455-557 2-136 (397)
286 1cdo_A Alcohol dehydrogenase; 26.0 2E+02 0.0069 28.6 8.6 40 451-491 189-228 (374)
287 3e2y_A Kynurenine-oxoglutarate 26.0 1.9E+02 0.0064 28.4 8.2 98 455-559 86-203 (410)
288 3n8i_A Low molecular weight ph 25.9 83 0.0028 28.6 5.2 70 462-531 17-93 (157)
289 3u5t_A 3-oxoacyl-[acyl-carrier 25.9 1E+02 0.0034 29.5 6.0 75 454-530 26-113 (267)
290 2kmf_A Photosystem II 11 kDa p 25.9 3.4E+02 0.012 24.0 8.8 78 351-431 20-106 (115)
291 3osu_A 3-oxoacyl-[acyl-carrier 25.7 2.3E+02 0.0079 26.2 8.5 75 455-531 4-91 (246)
292 4e7p_A Response regulator; DNA 25.7 69 0.0024 26.8 4.4 35 479-513 65-102 (150)
293 4dhx_B Enhancer of yellow 2 tr 25.7 3.2E+02 0.011 23.4 8.9 57 376-436 41-98 (101)
294 1iug_A Putative aspartate amin 25.6 90 0.0031 29.7 5.6 96 455-558 52-155 (352)
295 1gd9_A Aspartate aminotransfer 25.5 1.8E+02 0.0063 28.3 8.0 100 453-559 85-196 (389)
296 2ejb_A Probable aromatic acid 25.5 96 0.0033 29.2 5.7 38 484-521 7-44 (189)
297 2ydy_A Methionine adenosyltran 25.4 91 0.0031 29.7 5.6 91 455-557 2-103 (315)
298 2o0r_A RV0858C (N-succinyldiam 25.4 2.9E+02 0.01 27.2 9.6 97 456-559 88-196 (411)
299 4iin_A 3-ketoacyl-acyl carrier 25.4 2.5E+02 0.0084 26.5 8.7 76 454-531 28-116 (271)
300 3mm4_A Histidine kinase homolo 25.2 2.3E+02 0.0079 25.5 8.1 58 457-514 88-160 (206)
301 2x4g_A Nucleoside-diphosphate- 25.2 1.2E+02 0.0041 29.1 6.5 95 456-557 14-118 (342)
302 3ri6_A O-acetylhomoserine sulf 25.2 2.3E+02 0.008 29.2 9.1 95 457-559 100-200 (430)
303 1id1_A Putative potassium chan 25.2 2.3E+02 0.008 24.2 7.8 74 455-531 3-80 (153)
304 3tjr_A Short chain dehydrogena 25.2 2.4E+02 0.0082 27.2 8.7 75 454-531 30-117 (301)
305 1va0_A Uroporphyrin-III C-meth 25.1 1.7E+02 0.0058 27.6 7.5 61 470-531 67-137 (239)
306 1bvy_F Protein (cytochrome P45 25.1 47 0.0016 30.9 3.4 46 498-545 43-88 (191)
307 3ez1_A Aminotransferase MOCR f 25.1 1.6E+02 0.0055 29.2 7.6 103 452-558 85-209 (423)
308 3uog_A Alcohol dehydrogenase; 25.1 1E+02 0.0036 30.7 6.2 53 451-510 186-238 (363)
309 3op7_A Aminotransferase class 25.1 2.1E+02 0.007 27.7 8.2 99 454-559 81-190 (375)
310 3goh_A Alcohol dehydrogenase, 25.0 1.1E+02 0.0037 29.8 6.2 46 451-501 139-184 (315)
311 3awd_A GOX2181, putative polyo 25.0 3.3E+02 0.011 25.0 9.3 75 454-531 12-99 (260)
312 3gk3_A Acetoacetyl-COA reducta 24.9 2.3E+02 0.0078 26.7 8.3 77 453-531 23-112 (269)
313 4iiu_A 3-oxoacyl-[acyl-carrier 24.8 2.5E+02 0.0085 26.3 8.5 75 455-531 26-113 (267)
314 3h5n_A MCCB protein; ubiquitin 24.7 3.5E+02 0.012 27.4 10.2 100 449-559 113-237 (353)
315 1yqd_A Sinapyl alcohol dehydro 24.5 1.9E+02 0.0066 28.8 8.1 38 452-491 184-222 (366)
316 3czc_A RMPB; alpha/beta sandwi 24.5 2E+02 0.007 24.1 7.1 34 499-532 41-77 (110)
317 3jzl_A Putative cystathionine 24.5 4.6E+02 0.016 26.9 11.1 91 462-559 85-198 (409)
318 3jx9_A Putative phosphoheptose 24.3 84 0.0029 29.3 4.9 31 451-481 74-107 (170)
319 3uko_A Alcohol dehydrogenase c 24.3 1.7E+02 0.0058 29.3 7.6 40 451-491 190-229 (378)
320 3uwc_A Nucleotide-sugar aminot 24.3 1.5E+02 0.005 28.8 6.9 96 452-559 51-155 (374)
321 1smk_A Malate dehydrogenase, g 24.3 2E+02 0.0067 28.8 8.1 98 456-556 9-116 (326)
322 1pjc_A Protein (L-alanine dehy 24.2 1.7E+02 0.0059 29.5 7.7 70 455-528 167-236 (361)
323 3oy2_A Glycosyltransferase B73 24.2 83 0.0028 31.0 5.2 95 455-559 184-300 (413)
324 3rsc_A CALG2; TDP, enediyne, s 24.2 2E+02 0.007 28.3 8.1 12 548-559 132-143 (415)
325 1qv9_A F420-dependent methylen 24.2 2.5E+02 0.0085 28.2 8.4 49 466-515 52-101 (283)
326 2fr1_A Erythromycin synthase, 24.1 3.1E+02 0.011 28.9 10.0 103 452-556 223-352 (486)
327 1lnq_A MTHK channels, potassiu 23.9 1.2E+02 0.0041 29.9 6.3 85 455-558 115-204 (336)
328 3e48_A Putative nucleoside-dip 23.9 75 0.0026 30.0 4.6 94 457-558 2-99 (289)
329 2z04_A Phosphoribosylaminoimid 23.9 1.5E+02 0.0053 29.2 7.2 66 457-533 3-68 (365)
330 2r2n_A Kynurenine/alpha-aminoa 23.8 2.8E+02 0.0096 27.7 9.2 97 456-558 110-226 (425)
331 4a26_A Putative C-1-tetrahydro 23.7 3.1E+02 0.01 27.8 9.3 47 482-529 167-217 (300)
332 3mc6_A Sphingosine-1-phosphate 23.7 2.2E+02 0.0075 29.2 8.5 99 454-559 126-239 (497)
333 3rq1_A Aminotransferase class 23.7 2.3E+02 0.0078 28.0 8.4 92 456-553 104-210 (418)
334 4eez_A Alcohol dehydrogenase 1 23.6 75 0.0026 31.2 4.8 40 451-491 160-199 (348)
335 3d4o_A Dipicolinate synthase s 23.5 2.8E+02 0.0094 27.0 8.8 68 454-530 154-221 (293)
336 2ywr_A Phosphoribosylglycinami 23.5 2.2E+02 0.0075 27.0 7.9 74 458-534 6-93 (216)
337 1zsy_A Mitochondrial 2-enoyl t 23.5 2.3E+02 0.0077 28.1 8.3 55 451-510 164-221 (357)
338 3hn7_A UDP-N-acetylmuramate-L- 23.5 2.1E+02 0.007 30.6 8.5 89 454-559 18-107 (524)
339 3vps_A TUNA, NAD-dependent epi 23.5 1.1E+02 0.0038 28.9 5.8 17 541-557 95-111 (321)
340 3s99_A Basic membrane lipoprot 23.5 3.5E+02 0.012 27.4 9.9 88 466-553 46-144 (356)
341 3f0h_A Aminotransferase; RER07 23.4 2.1E+02 0.0072 27.5 7.9 96 456-559 72-177 (376)
342 3ffh_A Histidinol-phosphate am 23.4 1.6E+02 0.0055 28.3 7.1 53 455-513 85-137 (363)
343 2hcy_A Alcohol dehydrogenase 1 23.4 1.5E+02 0.005 29.3 6.9 51 451-508 166-217 (347)
344 3hvy_A Cystathionine beta-lyas 23.3 5.1E+02 0.017 26.8 11.3 92 460-558 98-214 (427)
345 3oj0_A Glutr, glutamyl-tRNA re 23.2 1.1E+02 0.0036 26.3 5.1 68 455-530 21-88 (144)
346 1y1p_A ARII, aldehyde reductas 23.2 2.8E+02 0.0096 26.3 8.7 99 452-553 8-119 (342)
347 3klj_A NAD(FAD)-dependent dehy 23.2 1.4E+02 0.0049 30.2 6.9 71 455-530 146-227 (385)
348 3cog_A Cystathionine gamma-lya 23.2 1.4E+02 0.0049 30.1 6.9 94 456-558 84-184 (403)
349 3nbm_A PTS system, lactose-spe 23.2 1E+02 0.0035 26.4 5.0 31 503-533 32-64 (108)
350 4etn_A LMPTP, low molecular we 23.1 77 0.0026 29.7 4.5 73 457-531 36-119 (184)
351 3jv7_A ADH-A; dehydrogenase, n 23.0 2.7E+02 0.0092 27.3 8.7 55 451-511 168-222 (345)
352 4e3z_A Putative oxidoreductase 23.0 2.7E+02 0.0093 26.1 8.4 78 453-532 24-114 (272)
353 2rir_A Dipicolinate synthase, 22.9 3.2E+02 0.011 26.5 9.2 69 454-531 156-224 (300)
354 2csu_A 457AA long hypothetical 22.9 1.9E+02 0.0065 30.5 8.0 97 456-557 66-174 (457)
355 1edo_A Beta-keto acyl carrier 22.8 2.6E+02 0.009 25.4 8.1 73 456-530 2-87 (244)
356 3ndc_A Precorrin-4 C(11)-methy 22.8 1.9E+02 0.0064 28.1 7.4 71 450-521 46-121 (264)
357 1nyt_A Shikimate 5-dehydrogena 22.7 2E+02 0.0069 27.7 7.6 47 454-503 118-164 (271)
358 3mt0_A Uncharacterized protein 22.7 4.8E+02 0.016 24.5 11.5 89 465-559 22-123 (290)
359 1v54_E Cytochrome C oxidase po 22.6 1.7E+02 0.0057 25.8 6.1 43 319-361 15-58 (109)
360 2dwc_A PH0318, 433AA long hypo 22.6 76 0.0026 32.4 4.7 69 455-533 19-93 (433)
361 4e16_A Precorrin-4 C(11)-methy 22.5 1.6E+02 0.0055 28.2 6.8 52 469-521 68-122 (253)
362 2o1b_A Aminotransferase, class 22.5 2.3E+02 0.0078 28.1 8.2 98 455-559 110-217 (404)
363 3rss_A Putative uncharacterize 22.4 4.5E+02 0.015 28.3 10.8 94 438-537 33-132 (502)
364 3rof_A Low molecular weight pr 22.3 57 0.002 29.8 3.3 53 457-509 8-71 (158)
365 3m6i_A L-arabinitol 4-dehydrog 22.3 1.9E+02 0.0064 28.7 7.4 48 451-501 176-223 (363)
366 2amh_A Septum formation protei 22.2 1.8E+02 0.0062 27.8 7.0 85 458-549 11-108 (207)
367 3h9u_A Adenosylhomocysteinase; 22.2 2.6E+02 0.0089 29.8 8.8 69 450-530 206-274 (436)
368 2ph3_A 3-oxoacyl-[acyl carrier 22.2 3E+02 0.01 24.9 8.3 73 456-530 2-88 (245)
369 3pl5_A SMU_165, putative uncha 22.1 1.7E+02 0.0057 29.8 7.1 56 452-507 112-178 (320)
370 3fys_A Protein DEGV; fatty aci 22.1 1.1E+02 0.0036 31.2 5.6 55 451-506 110-172 (315)
371 1cs1_A CGS, protein (cystathio 22.0 3.8E+02 0.013 26.2 9.6 96 456-559 69-170 (386)
372 2jk1_A HUPR, hydrogenase trans 21.7 2.3E+02 0.008 23.0 6.8 34 479-512 43-79 (139)
373 2dt8_A DEGV family protein; fa 21.6 74 0.0025 31.5 4.2 55 450-506 75-137 (280)
374 1x87_A Urocanase protein; stru 21.6 2.7E+02 0.0091 30.6 8.7 116 372-491 209-366 (551)
375 4dmm_A 3-oxoacyl-[acyl-carrier 21.6 3.1E+02 0.011 25.9 8.6 76 454-531 27-115 (269)
376 3eod_A Protein HNR; response r 21.5 1.3E+02 0.0046 24.0 5.2 55 455-514 31-88 (130)
377 1v4v_A UDP-N-acetylglucosamine 21.5 4.1E+02 0.014 25.6 9.6 66 477-559 227-296 (376)
378 5nul_A Flavodoxin; electron tr 21.4 95 0.0032 26.2 4.4 35 498-532 20-55 (138)
379 3s2e_A Zinc-containing alcohol 21.3 90 0.0031 30.7 4.8 53 451-510 163-215 (340)
380 1gc0_A Methionine gamma-lyase; 21.2 2.4E+02 0.008 28.1 7.9 96 456-559 82-183 (398)
381 3cu5_A Two component transcrip 21.2 1.3E+02 0.0043 25.0 5.1 54 479-534 48-104 (141)
382 3cis_A Uncharacterized protein 21.1 5.3E+02 0.018 24.4 10.3 51 505-559 100-156 (309)
383 3gaz_A Alcohol dehydrogenase s 21.1 1.3E+02 0.0044 29.8 5.9 46 451-501 147-193 (343)
384 3aow_A Putative uncharacterize 21.1 2.1E+02 0.0073 29.2 7.7 99 454-558 140-252 (448)
385 3l07_A Bifunctional protein fo 21.1 3.8E+02 0.013 26.9 9.3 65 464-529 142-211 (285)
386 1fg7_A Histidinol phosphate am 21.1 2E+02 0.0068 28.0 7.2 53 455-512 76-128 (356)
387 1xi9_A Putative transaminase; 21.0 4.7E+02 0.016 25.6 10.1 99 454-559 101-210 (406)
388 2j3h_A NADP-dependent oxidored 21.0 1.4E+02 0.0047 29.3 6.1 38 451-490 152-190 (345)
389 1f0k_A MURG, UDP-N-acetylgluco 21.0 5E+02 0.017 24.7 10.0 72 456-530 184-262 (364)
390 3is3_A 17BETA-hydroxysteroid d 20.8 2E+02 0.0069 27.1 7.0 76 454-531 17-105 (270)
391 1ex2_A Protein MAF; structural 20.7 1.7E+02 0.0059 27.6 6.4 78 460-549 6-89 (189)
392 1pff_A Methionine gamma-lyase; 20.7 3.3E+02 0.011 25.8 8.6 96 456-559 15-117 (331)
393 2ekd_A Hypothetical protein PH 20.6 1.2E+02 0.0039 29.4 5.2 82 448-543 8-90 (207)
394 2xci_A KDO-transferase, 3-deox 20.6 2.5E+02 0.0087 28.0 8.1 54 477-531 222-286 (374)
395 3l4e_A Uncharacterized peptida 20.5 1.2E+02 0.0043 28.5 5.4 72 458-529 5-86 (206)
396 3tqx_A 2-amino-3-ketobutyrate 20.5 3.9E+02 0.014 25.7 9.3 94 456-559 105-208 (399)
397 3hv2_A Response regulator/HD d 20.5 2E+02 0.0067 24.0 6.2 54 455-513 38-94 (153)
398 2vhw_A Alanine dehydrogenase; 20.4 2.4E+02 0.0082 28.7 7.9 69 454-528 167-237 (377)
399 1s4d_A Uroporphyrin-III C-meth 20.3 1.7E+02 0.0057 28.7 6.5 51 469-520 83-136 (280)
400 1gpj_A Glutamyl-tRNA reductase 20.3 2.6E+02 0.0087 28.8 8.2 70 454-530 166-235 (404)
401 3enk_A UDP-glucose 4-epimerase 20.3 2.6E+02 0.0089 26.7 7.8 101 454-557 4-121 (341)
402 2e0n_A Precorrin-2 C20-methylt 20.3 2.1E+02 0.0071 27.4 7.0 53 467-521 86-141 (259)
403 1cbf_A Cobalt-precorrin-4 tran 20.2 1.5E+02 0.0053 28.9 6.2 50 471-521 86-138 (285)
404 3a2b_A Serine palmitoyltransfe 20.1 2.4E+02 0.0083 27.5 7.7 93 456-558 105-205 (398)
405 3a9z_A Selenocysteine lyase; P 20.1 6.3E+02 0.021 24.8 11.6 95 455-556 79-205 (432)
406 4hv4_A UDP-N-acetylmuramate--L 20.1 2.1E+02 0.0073 30.2 7.7 87 454-559 21-108 (494)
407 2uvd_A 3-oxoacyl-(acyl-carrier 20.1 3.7E+02 0.013 24.7 8.6 74 455-530 4-90 (246)
408 1xdp_A Polyphosphate kinase; P 20.0 1.9E+02 0.0066 32.5 7.6 47 465-512 379-428 (687)
409 2gi4_A Possible phosphotyrosin 20.0 1E+02 0.0035 27.8 4.5 68 462-529 13-88 (156)
410 2a3n_A Putative glucosamine-fr 20.0 6.6E+02 0.023 25.0 11.7 37 493-529 117-153 (355)
No 1
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=100.00 E-value=1.6e-50 Score=419.09 Aligned_cols=227 Identities=22% Similarity=0.334 Sum_probs=214.2
Q ss_pred chHHHHHHHhhhcCCcccChHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHH
Q 008627 328 LHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKS 407 (559)
Q Consensus 328 VHPaVl~Lglq~~~~~I~GSnAraiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAIrrlk~ 407 (559)
....+..++..+++|+|+|++++|++++.+|..++..+.+.. ..+|.+.|+..+++|.++||++++|+|+++++++
T Consensus 19 ~~~~~~~~~~aI~~m~VrGApai~iaaa~~l~~~~~~~~~~~----~~~l~~~l~~~~~~L~~aRPtav~L~~a~~~~~~ 94 (338)
T 3a11_A 19 VVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKSKATN----VDEFWKEMKQAAKILFETRPTAVSLPNALRYVMH 94 (338)
T ss_dssp CCSHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHCCCCS----HHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHhCcEeCcHHHHHHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 456889999999999999999999999999999999987654 6789999999999999999999999999999999
Q ss_pred HHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEc
Q 008627 408 QIAK-IPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIV 486 (559)
Q Consensus 408 ~I~~-l~~~~s~~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVv 486 (559)
.+.. +....+.+++|+.|++.+++|++|. ..+++.|+++++++|++|++|||||||+||+.+|+.|+++|++|+|||+
T Consensus 95 ~i~~~~~~~~~~~~~k~~l~~~a~~~~~e~-~~~~~~I~~~g~~~I~~g~~ILTh~~S~tvl~~l~~A~~~gk~~~V~v~ 173 (338)
T 3a11_A 95 RGKIAYSSGADLEQLRFVIINAAKEFIHNS-EKALERIGEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQGKDIKVIVT 173 (338)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCCTTCEEEECSCCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCEEEEeCCcHHHHHHHHHHHHCCCeEEEEEe
Confidence 8875 2234578899999999999999995 5789999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 487 DSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 487 ESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
||||++||+.+|++|.+.||+||||+|+|++|+|.+||+||||||+|++||+++||+|||++|++||+|||||
T Consensus 174 EtRP~~qGrltA~eL~~~GI~vtlI~Dsa~~~~M~~Vd~VivGAd~V~anG~v~NKiGT~~lAl~Ak~~~vPf 246 (338)
T 3a11_A 174 ETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWT 246 (338)
T ss_dssp CCTTTTHHHHHHHHHHHTTCCEEEECGGGTTTTGGGCSEEEECCSEECTTSCEEEETTHHHHHHHHHHTTCEE
T ss_pred CCCCchhhHHHHHHHHhCCCCEEEEehHHHHHHHHhCCEEEECccEEecCCCEeecccHHHHHHHHHHcCCCE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=100.00 E-value=2.9e-47 Score=400.28 Aligned_cols=225 Identities=20% Similarity=0.261 Sum_probs=203.6
Q ss_pred HHHHHHHhhhcCCcccChHHHHHHH----HHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHH
Q 008627 330 PAVYKVGLQYLSGDICGGNARCIAM----LQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFL 405 (559)
Q Consensus 330 PaVl~Lglq~~~~~I~GSnAraiA~----L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAIrrl 405 (559)
..+..+...+++|+|+|++++++++ +.+++++....+|.. ..+|.+.|+..+++|.++||++++|+|+++++
T Consensus 46 ~~~~~~~~aIk~m~VrGApaIgiaaa~~l~l~~~~~~~~~~~~~----~~~l~~~l~~~~~~L~~aRPtavnL~na~~r~ 121 (383)
T 2a0u_A 46 LTVEDIWSAIKEMRVRGAPAIAVSAALGIAVATQRKAANGELKS----GREVQTFLLTSCDFVMTSRPTAVNLFNCLRDL 121 (383)
T ss_dssp CSHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHHHSSCCC----HHHHHHHHHHHHHHHTTSCCSCSHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhhcccccCCC----HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 3577788889999999999995544 455566655555544 67899999999999999999999999999999
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------CCCEEEEecCc--------HHHHH
Q 008627 406 KSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIR--------DGDVLLTYGSS--------SAVEM 469 (559)
Q Consensus 406 k~~I~~l~~~~s~~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~--------dGdvILT~g~S--------stV~~ 469 (559)
++.+.....+.+.+++|+.|++.+++|++|. ..+++.|+++++++|. +|++||||||| +||+.
T Consensus 122 ~~~i~~~~~~~~~~~~k~~l~~~a~~i~~e~-~~~~~~I~~~g~~~I~~~~~~~~~~g~~ILThcnsg~Lat~g~gTal~ 200 (383)
T 2a0u_A 122 KAQVDKLDPTKAAAEVAQAFVELAEAVYTND-VAFNEGIMRHGAAHILAAAKAEGRDKVSILTICNTGALATSRYGTALG 200 (383)
T ss_dssp HHHHHHSCTTSCSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTCSSEEEEECSCCSTTTSSSSCSHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhccccCCCCCEEEEecCCcchhcCCCchHHH
Confidence 9999864333567899999999999999996 4789999999999999 99999999998 69999
Q ss_pred HHHHHHHhCCceEEEEcCCCCCchHHH-HHHHHHhCCCceEEEecchHHHHhcc--ccEEEEcceeeecCCceecccchH
Q 008627 470 ILQHAHELGKQFRVVIVDSRPKHEGKL-LLRRLVRKGLSCTYTHINAISYIIHE--VTRVFLGASSVLSNGTVCSRVGTA 546 (559)
Q Consensus 470 iL~~A~e~Gk~FrViVvESRP~~EG~~-LAk~L~~~GI~vTyI~DsAvs~iM~~--VdkVlLGAdaIlaNGsVvNKvGT~ 546 (559)
+|+.|+++|++|+|||+||||++||.+ +|++|.+.||+||||+|++++|+|++ ||+||||||+|++||+++||+|||
T Consensus 201 ~l~~A~~~gk~~~V~v~EtRP~~qGarltA~eL~~~GIpvtlI~Dsa~~~~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy 280 (383)
T 2a0u_A 201 VVRQLFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDGAASSLMLNRKIDAVVVGADRICQNGDTANKIGTY 280 (383)
T ss_dssp HHHHHHHTTCEEEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGGGHHHHHHHSCCCEEEECCSEECTTCCEEEETTHH
T ss_pred HHHHHHHcCCeEEEEEeCCCCccchHHHHHHHHHHcCCCEEEEehhHHHHHhhcCCCCEEEECccEEecCCCEeecccHH
Confidence 999999999999999999999999975 69999999999999999999999998 999999999999999999999999
Q ss_pred HHHHHHhhCCCCC
Q 008627 547 CVAMVAYGFHIPV 559 (559)
Q Consensus 547 ~IALaAk~~~VPV 559 (559)
++|++||+|||||
T Consensus 281 ~lAl~Ak~~~vPf 293 (383)
T 2a0u_A 281 NLAVSAKFHGVKL 293 (383)
T ss_dssp HHHHHHHHTTCCE
T ss_pred HHHHHHHHcCCCE
Confidence 9999999999997
No 3
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=100.00 E-value=2.9e-47 Score=399.27 Aligned_cols=222 Identities=20% Similarity=0.285 Sum_probs=206.5
Q ss_pred HHHHHHHhhhcCCcccChHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHH
Q 008627 330 PAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQI 409 (559)
Q Consensus 330 PaVl~Lglq~~~~~I~GSnAraiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAIrrlk~~I 409 (559)
.++..+...+++++|+|++++++++..++...+....+.. ..+|.+.|+..+++|.++||++++|+|+++++++.+
T Consensus 57 ~~~~~~~~aIk~m~VrGApaIgiaaa~~l~l~~~~~~~~~----~~~l~~~l~~~~~~L~~aRPtavnL~~ai~r~~~~i 132 (374)
T 2yvk_A 57 TTKEDVFDAIVTLKVRGAPAIGITAAFGLALAAKDIETDN----VTEFRRRLEDIKQYLNSSRPTAINLSWALERLSHSV 132 (374)
T ss_dssp CSHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHTTCCCSC----HHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhCccCCcHHHHHHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 4577788889999999999999999999998888765432 678999999999999999999999999999999988
Q ss_pred HhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCc--------HHHHHHHHHHHHhCCce
Q 008627 410 AKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSS--------SAVEMILQHAHELGKQF 481 (559)
Q Consensus 410 ~~l~~~~s~~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~S--------stV~~iL~~A~e~Gk~F 481 (559)
... .+.+++|+.|++.+++|++|. ..+++.|+++++++|++|++||||||| +||+.+|+.|+++|++|
T Consensus 133 ~~~---~~~~~~k~~l~~~a~~~~~e~-~~~~~~I~~~g~~~I~~g~~ILThcnsg~Lat~g~gTal~~l~~A~~~gk~~ 208 (374)
T 2yvk_A 133 ENA---ISVNEAKTNLVHEAIQIQVED-EETCRLIGQNALQLFKKGDRIMTICNAGSIATSRYGTALAPFYLAKQKDLGL 208 (374)
T ss_dssp TTC---SSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHGGGCCTTCEEEECSCCSTTTSSSSCSTTHHHHHHHHTTCCC
T ss_pred Hhc---CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCEEEEecCCCccccCCCcHHHHHHHHHHHcCCEE
Confidence 643 468899999999999999995 578999999999999999999999988 68999999999999999
Q ss_pred EEEEcCCCCCchHHH-HHHHHHhCCCceEEEecchHHHHhcc--ccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 482 RVVIVDSRPKHEGKL-LLRRLVRKGLSCTYTHINAISYIIHE--VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 482 rViVvESRP~~EG~~-LAk~L~~~GI~vTyI~DsAvs~iM~~--VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
+|||+||||++||.+ +|++|.+.||+||||+|++++|+|++ ||+||||||+|++||+++||+|||++|++||+||||
T Consensus 209 ~V~v~EtRP~~qG~rltA~eL~~~GIpvtlI~Dsa~~~~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vP 288 (374)
T 2yvk_A 209 HIYACETRPVLQGSRLTAWELMQGGIDVTLITDSMAAHTMKEKQISAVIVGADRIAKNGDTANKIGTYGLAILANAFDIP 288 (374)
T ss_dssp EEEEECCTTTTHHHHTHHHHHHTTTCEEEEECGGGHHHHHHHTTCCEEEECCSEEETTCCEEEETTHHHHHHHHHHTTCC
T ss_pred EEEEeCCCCccccHHHHHHHHHHcCCCEEEEehhHHHHHhhhcCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCC
Confidence 999999999999975 69999999999999999999999997 999999999999999999999999999999999999
Q ss_pred C
Q 008627 559 V 559 (559)
Q Consensus 559 V 559 (559)
|
T Consensus 289 f 289 (374)
T 2yvk_A 289 F 289 (374)
T ss_dssp E
T ss_pred E
Confidence 7
No 4
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=100.00 E-value=1.7e-47 Score=386.30 Aligned_cols=213 Identities=24% Similarity=0.302 Sum_probs=203.2
Q ss_pred chHHHHHHHhhhcCCcccChHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHH
Q 008627 328 LHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKS 407 (559)
Q Consensus 328 VHPaVl~Lglq~~~~~I~GSnAraiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAIrrlk~ 407 (559)
+||.+..++..+++++|+|++++|++++.+|+.++.++ + ..+|++.|+..+++|.++||++++|+|+++++
T Consensus 2 l~~~~~~~~~~i~~~~vrGa~~i~~aa~~~l~~~~~~~-~------~~~~~~~l~~~~~~L~~~RPtav~l~~a~~~~-- 72 (276)
T 1vb5_A 2 LPERVLEILREMKRERIKGASWLAKKGAEAFLTLAEEL-D------ESLLEDAIMELREEVVKVNPSMASLYNLARFI-- 72 (276)
T ss_dssp CCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHS-C------TTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHS--
T ss_pred CcccHHHHHHHHHhCcEeCcHHHHHHHHHHHHHHHHhc-C------HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHc--
Confidence 79999999999999999999999999999999999998 2 24789999999999999999999999999998
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcC
Q 008627 408 QIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVD 487 (559)
Q Consensus 408 ~I~~l~~~~s~~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvE 487 (559)
+.+++|+.|++.+++|++| +..++++|+++++++|++|++|||||+|+||+.+|+.|+++|++|+|||+|
T Consensus 73 ---------~~~~~k~~l~~~~~~~~~~-~~~~~~~Ia~~a~~~I~~g~~IlT~~~s~Tv~~~l~~a~~~~~~~~V~v~e 142 (276)
T 1vb5_A 73 ---------PVTNRRDILKSRALEFLRR-MEEAKRELASIGAQLIDDGDVIITHSFSSTVLEIIRTAKERKKRFKVILTE 142 (276)
T ss_dssp ---------CCCSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCTTEEEECCSCCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ---------CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccCCCEEEEeCCChHHHHHHHHHHHcCCeEEEEEeC
Confidence 1345788899999999987 678999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 488 SRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 488 SRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
|||++||+.++++|.+.||+||||+|++++|+|++||+||||||+|++||+++||+|||++|++||+|+|||
T Consensus 143 trP~~qG~~~a~~L~~~gI~vtli~dsa~~~~m~~vd~vivGAd~i~~nG~v~nkiGt~~iA~~A~~~~vp~ 214 (276)
T 1vb5_A 143 SSPDYEGLHLARELEFSGIEFEVITDAQMGLFCREASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPF 214 (276)
T ss_dssp CTTTTHHHHHHHHHHHTTCCEEEECGGGHHHHHTTCSEEEECCSEECTTSCEEEETTHHHHHHHHHHTTCCE
T ss_pred CCcchhhHHHHHHHHHCCCCEEEEcHHHHHHHHccCCEEEEcccEEecCCCEeechhHHHHHHHHHHcCCCE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997
No 5
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=100.00 E-value=5.2e-47 Score=394.57 Aligned_cols=221 Identities=23% Similarity=0.325 Sum_probs=205.0
Q ss_pred HHHHHHHhhhcCCcccChHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHH
Q 008627 330 PAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQI 409 (559)
Q Consensus 330 PaVl~Lglq~~~~~I~GSnAraiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAIrrlk~~I 409 (559)
.++..+...+++|+|+|++++++++...+..++....+.. ..+|.+.|+..+++|.++||++++|+|+++++++.+
T Consensus 30 ~~~~~~~~aIk~m~VrGApai~iaaa~~l~l~~~~~~~~~----~~~l~~~l~~~~~~L~~aRPtav~l~~a~~~~~~~i 105 (351)
T 1t5o_A 30 RNVEELADAIKKLAVRGAPALEAAGAYGIALAAREREFAD----VDELKEHLKKAADFLASTRPTAVNLFVGIERALNAA 105 (351)
T ss_dssp CSHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHTTSSCCSC----HHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCcCCcHHHHHHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 3577788889999999999999999999988887655422 678999999999999999999999999999999998
Q ss_pred HhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCc--------HHHHHHHHHHHHhCCce
Q 008627 410 AKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSS--------SAVEMILQHAHELGKQF 481 (559)
Q Consensus 410 ~~l~~~~s~~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~S--------stV~~iL~~A~e~Gk~F 481 (559)
.. ..+.+++|+.|++.+++|++|. ..+++.|++++.++|++|++||||||| +||+.+|+.|+++|++|
T Consensus 106 ~~---~~~~~~~k~~l~~~~~~~~~e~-~~~~~~I~~~g~~~I~~g~~ILThcnsg~lat~g~gtal~~l~~A~~~gk~~ 181 (351)
T 1t5o_A 106 LK---GESVEEVKELALREAEKLAEED-VERNRKMGEYGAELLEDGDVVLTYCNAGRLATVDWGTALGVVRSAVEQGKEI 181 (351)
T ss_dssp TT---CSSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCCTTCEEEECSCCSSSSSSSSCSHHHHHHHHHHTTCCC
T ss_pred hh---cCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCEEEEecCCccccccCCChHHHHHHHHHHCCCEE
Confidence 65 3468899999999999999996 578999999999999999999999987 68999999999999999
Q ss_pred EEEEcCCCCCchHHH-HHHHHHhCCCceEEEecchHHHHhcc--ccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 482 RVVIVDSRPKHEGKL-LLRRLVRKGLSCTYTHINAISYIIHE--VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 482 rViVvESRP~~EG~~-LAk~L~~~GI~vTyI~DsAvs~iM~~--VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
+|||+||||++||.+ +|++|.+.||+||||+|+|++|+|++ ||+||||||+|++|| ++||+|||++|++||+||||
T Consensus 182 ~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd~VivGAd~V~aNG-v~NKiGT~~lAl~Ak~~~vP 260 (351)
T 1t5o_A 182 RVIACETRPLNQGSRLTCWELMEDGIDVTLITDSMVGIVMQKGMVDKVIVGADRIVRDA-VFNKIGTYTVSVVAKHHNIP 260 (351)
T ss_dssp EEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGGGHHHHHHTTCCSEEEECCSEEETTE-EEEETTHHHHHHHHHHTTCC
T ss_pred EEEEeCCCcccccHHHHHHHHHhCCCCEEEEehhHHHHHhhcCCCCEEEECccchhhcC-cccccCHHHHHHHHHHcCCC
Confidence 999999999999976 69999999999999999999999987 999999999999999 99999999999999999999
Q ss_pred C
Q 008627 559 V 559 (559)
Q Consensus 559 V 559 (559)
|
T Consensus 261 f 261 (351)
T 1t5o_A 261 F 261 (351)
T ss_dssp E
T ss_pred E
Confidence 7
No 6
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=100.00 E-value=1.4e-46 Score=390.85 Aligned_cols=219 Identities=21% Similarity=0.282 Sum_probs=200.8
Q ss_pred HHHHHHHhhhcCCcccChHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHH
Q 008627 330 PAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQI 409 (559)
Q Consensus 330 PaVl~Lglq~~~~~I~GSnAraiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAIrrlk~~I 409 (559)
.++..+...+++|+|+|++++++++...+...+....... .. +.|+..+++|.++||++++|+|+++++++.+
T Consensus 35 ~~~~~~~~aIk~m~VrGAp~ig~aaa~~l~l~~~~~~~~~----~~---~~l~~~~~~L~~aRPtav~l~~a~~~~~~~i 107 (347)
T 1t9k_A 35 KTHEEVAHAIKEMIVRGAPAIGVAAAFGYVLGLRDYKTGS----LT---DWMKQVKETLARTRPTAVNLFWALNRMEKVF 107 (347)
T ss_dssp CSHHHHHHHHHHTSSCSHHHHHHHHHHHHHHHHHTCCSSC----HH---HHHHHHHHHHHTSCSSCTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCcCCcHHHHHHHHHHHHHHHHhcccCC----HH---HHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 4677788889999999999999999888888887654321 12 4599999999999999999999999999999
Q ss_pred HhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCcH--------HHHHHHHHHHHhCCce
Q 008627 410 AKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSS--------AVEMILQHAHELGKQF 481 (559)
Q Consensus 410 ~~l~~~~s~~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~Ss--------tV~~iL~~A~e~Gk~F 481 (559)
.... +.+++|+.|++.+++|++|. ..+++.|++++.++|++|++|||||||+ ||+.+|+.|+++|++|
T Consensus 108 ~~~~---~~~~~k~~l~~~~~~~~~e~-~~~~~~I~~~g~~~I~~g~~ILThcns~~lat~~~gtvl~~l~~A~~~gk~~ 183 (347)
T 1t9k_A 108 FENA---DRENLFEILENEALKMAYED-IEVNKAIGKNGAQLIKDGSTILTHCNAGALATVDYGTALGVIRAAVESGKRI 183 (347)
T ss_dssp HTTT---TCTTHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTSCTTEEEEECSCCSGGGSSSSCSHHHHHHHHHHTTCCE
T ss_pred HhcC---CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCEEEEecCCCccccCCccHHHHHHHHHHHCCCeE
Confidence 7542 45679999999999999995 5789999999999999999999999999 9999999999999999
Q ss_pred EEEEcCCCCCchHHH-HHHHHHhCCCceEEEecchHHHHhcc--ccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 482 RVVIVDSRPKHEGKL-LLRRLVRKGLSCTYTHINAISYIIHE--VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 482 rViVvESRP~~EG~~-LAk~L~~~GI~vTyI~DsAvs~iM~~--VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
+|||+||||++||.+ ++++|.+.||+||||+|++++|+|++ ||+||||||+|++||+++||+|||++|++||+||||
T Consensus 184 ~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd~VivGAd~V~aNG~v~NKiGT~~lAl~Ak~~~vP 263 (347)
T 1t9k_A 184 RVFADETRPYLQGARLTAWELMKDGIEVYVITDNMAGWLMKRGLIDAVVVGADRIALNGDTANKIGTYSLAVLAKRNNIP 263 (347)
T ss_dssp EEEEECCTTTTHHHHTHHHHHHTTTCEEEEECGGGHHHHHHTTCCSEEEECCSEEETTSCEEEETTHHHHHHHHHHTTCC
T ss_pred EEEEeCCCCccccHHHHHHHHHhCCCCEEEEehhHHHHHhhcCCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCC
Confidence 999999999999975 69999999999999999999999987 999999999999999999999999999999999999
Q ss_pred C
Q 008627 559 V 559 (559)
Q Consensus 559 V 559 (559)
|
T Consensus 264 f 264 (347)
T 1t9k_A 264 F 264 (347)
T ss_dssp E
T ss_pred E
Confidence 7
No 7
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=100.00 E-value=4.6e-45 Score=375.09 Aligned_cols=207 Identities=24% Similarity=0.319 Sum_probs=184.8
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhcc-CCCCHHHHHHHH
Q 008627 347 GNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIP-ISLSESEAKATL 425 (559)
Q Consensus 347 SnAraiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAIrrlk~~I~~l~-~~~s~~eaK~~L 425 (559)
.-+.+++++++|.++++..++.. ..+|.+.|+..+++|.++|| +++|+|+++++++.|.... ...+.+++|+.|
T Consensus 19 ~~s~aiAAi~aL~~~l~~s~~~T----~~el~~~l~~a~~~L~~~r~-avsl~~a~~~~~~~i~~~~~~~~~~~~~k~~l 93 (315)
T 3ecs_A 19 DMASAVAAIRTLLEFLKRDKGET----IQGLRANLTSAIETLCGVDS-SVAVSSGGELFLRFISLASLEYSDYSKCKKIM 93 (315)
T ss_dssp TSCHHHHHHHHHHHHHTCCC--------CHHHHHHHHHHHTTTTTSC-CHHHHHHHHHHHHHCC-----------CTTHH
T ss_pred chHHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 34678999999999999877643 56999999999999999997 7899999999998774321 233578999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCC
Q 008627 426 HSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKG 505 (559)
Q Consensus 426 ~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~G 505 (559)
++.++.|++ ++..+++.|++++.++|++|++|||||+|+||+.+|+.|+++|++|+|||+||||++||.+|+++|.+.|
T Consensus 94 ~~~~~~~~~-~~~~a~~~I~~~~~~~I~~g~~ILTh~~S~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~la~~L~~~g 172 (315)
T 3ecs_A 94 IERGELFLR-RISLSRNKIADLCHTFIKDGATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKMAKALCHLN 172 (315)
T ss_dssp HHHHHHHHH-HHTTHHHHHHHHHGGGCCTTEEEEECSCCHHHHHHHHHHHTTTCCEEEEEECCTTTTHHHHHHHHHHTTT
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHcCCCCEEEEcCCcHHHHHHHHHHHHcCCeEEEEEecCCCcchHHHHHHHHHHcC
Confidence 999999995 4889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEecchHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 506 LSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 506 I~vTyI~DsAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
|+||||+|++++|+|++||+||||||+|++||+++||+|||++|++||+|||||
T Consensus 173 I~vtli~Dsa~~~~m~~vd~VivGAd~i~~nG~v~nkiGT~~iAl~Ak~~~vP~ 226 (315)
T 3ecs_A 173 VPVTVVLDAAVGYIMEKADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPF 226 (315)
T ss_dssp CCEEEECGGGHHHHGGGCSEEEEECSEECTTSCEEEETTHHHHHHHHHHTTCCE
T ss_pred CCEEEEehhHHHHHHHhCCEEEECceEEecCCCeeehhhhHHHHHHHHHhCCCE
Confidence 999999999999999999999999999999999999999999999999999997
No 8
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=99.92 E-value=7.2e-26 Score=218.10 Aligned_cols=82 Identities=24% Similarity=0.421 Sum_probs=79.7
Q ss_pred CCceEEEEcCCCCCchHHH-HHHHHHhCCCceEEEecchHHHHhcc----ccEEEEcceeeecCCceecccchHHHHHHH
Q 008627 478 GKQFRVVIVDSRPKHEGKL-LLRRLVRKGLSCTYTHINAISYIIHE----VTRVFLGASSVLSNGTVCSRVGTACVAMVA 552 (559)
Q Consensus 478 Gk~FrViVvESRP~~EG~~-LAk~L~~~GI~vTyI~DsAvs~iM~~----VdkVlLGAdaIlaNGsVvNKvGT~~IALaA 552 (559)
|++|+|||+||||++||.+ +|++|.+.||+||||+|+|++|+|++ ||+||||||+|++||+++||+|||++|++|
T Consensus 2 ~k~~~V~v~EsRP~~qG~rlta~eL~~~gI~vtlI~Dsa~~~~m~~~~~~Vd~VivGAd~v~~nG~v~nkiGT~~~Al~A 81 (191)
T 1w2w_B 2 PRMGHVFPLETRPYNQGSRLTAYELVYDKIPSTLITDSSIAYRIRTSPIPIKAAFVGADRIVRNGDTANKIGTLQLAVIC 81 (191)
T ss_dssp CEEEEEEEBCCTTTTHHHHTHHHHHHHHTCCBEEBCGGGHHHHHHHCSSCEEEEEECCSEECTTSCEEEETTHHHHHHHH
T ss_pred CcEEEEEEcCCCCccccHHHHHHHHHHcCCCEEEEechHHHHHHHhCCCCCCEEEECccEEecCCCEEecccHHHHHHHH
Confidence 6899999999999999986 59999999999999999999999988 999999999999999999999999999999
Q ss_pred hhCCCCC
Q 008627 553 YGFHIPV 559 (559)
Q Consensus 553 k~~~VPV 559 (559)
|+|||||
T Consensus 82 k~~~vPf 88 (191)
T 1w2w_B 82 KQFGIKF 88 (191)
T ss_dssp HHHTCEE
T ss_pred HHcCCCE
Confidence 9999997
No 9
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=99.75 E-value=4.3e-18 Score=166.37 Aligned_cols=148 Identities=12% Similarity=0.113 Sum_probs=123.3
Q ss_pred HHHHHHhhhcCCcccChHHHHHHHHHHHHHHHHhcC-CCCCc-------chHHHHHHHHHHHHHHHHhcCchhhhHHHHH
Q 008627 331 AVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYS-TPPAK-------TLSRDLTAKISSYVSFLIDCRPLSVSMGNAI 402 (559)
Q Consensus 331 aVl~Lglq~~~~~I~GSnAraiA~L~aLk~vI~dy~-tp~~~-------~lsrdL~~~L~~~i~~L~~aRPtsvsmgNAI 402 (559)
.+..+..-+++|+|+|++++++++...|...+..+. ..... ....+|...|+..+++|.++||++++|.|++
T Consensus 37 ~~~~v~~AIk~M~VRGAPaIgiaAA~glal~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~sRPTAVNL~~Al 116 (211)
T 1w2w_A 37 TIDDGYSVIKSMQVRGAPAIAIVGSLSVLTEVQLIKHNPTSDVATLYSLVNWESTKTVLNKRLDFLLSSRPTAVNLSNSL 116 (211)
T ss_dssp SHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHHCTTSTGGGGSCTTCHHHHHHHHHHHHHHHHTSCCSCSHHHHHH
T ss_pred CHHHHHHHHHCCcccCchHHHHHHHHHHHHHHHhccccCChhhcccccccchHHHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 455666678999999999999998888877766532 11100 0122788999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------c---CCCEEEEecCc--------H
Q 008627 403 RFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKI------R---DGDVLLTYGSS--------S 465 (559)
Q Consensus 403 rrlk~~I~~l~~~~s~~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I------~---dGdvILT~g~S--------s 465 (559)
++++..+... .+.+++++.+++.++.|++|+ ..+++.|+++++++| . +|++||||||+ +
T Consensus 117 ~r~~~~~~~~---~~~~~~~~~l~~~a~~i~~ed-~~~n~~IG~~Ga~lI~~~~~~~~~~dg~~ILTHCNtG~LAT~g~G 192 (211)
T 1w2w_A 117 VEIKNILKSS---SDLKAFDGSLYNYVCELIDED-LANNMKMGDNGAKYLIDVLQKDGFKDEFAVLTICNTGSLATSGYG 192 (211)
T ss_dssp HHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECSCCSGGGSSSSC
T ss_pred HHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcccccCCCCCeEEeECCCchHhhcCcc
Confidence 9999988643 357789999999999999996 468899999999999 8 89999999999 6
Q ss_pred HHHHHHHHHHHhCCceE
Q 008627 466 AVEMILQHAHELGKQFR 482 (559)
Q Consensus 466 tV~~iL~~A~e~Gk~Fr 482 (559)
|++.+|+.||++|+.|+
T Consensus 193 TALgvIr~a~~~Gk~~~ 209 (211)
T 1w2w_A 193 TALGVIRSLWKDSLAKT 209 (211)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCccc
Confidence 99999999999988763
No 10
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=97.41 E-value=0.00054 Score=67.41 Aligned_cols=99 Identities=15% Similarity=0.130 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHh----CCc-eEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc
Q 008627 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHEL----GKQ-FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN 514 (559)
Q Consensus 440 A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~----Gk~-FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds 514 (559)
..+.|++.|+++|++|++|.. +.++|+..+++...+. +.+ ++| |+.| ...+..|.+.||++..+-.
T Consensus 8 ~K~~IA~~Aa~~I~dg~~I~L-gsGST~~~~~~~L~~~~~~~~l~~itv-VTnS------~~~a~~l~~~gi~v~~l~~- 78 (227)
T 1uj6_A 8 YKKEAAHAAIAYVQDGMVVGL-GTGSTARYAVLELARRLREGELKGVVG-VPTS------RATEELAKREGIPLVDLPP- 78 (227)
T ss_dssp HHHHHHHHHHTTCCTTCEEEE-CCSHHHHHHHHHHHHHHHTTSSCSCEE-EESS------HHHHHHHHHTTCCBCCCCT-
T ss_pred HHHHHHHHHHHHCCCCCEEEE-cCCHHHHHHHHHHhhhhhhcCCCCEEE-ECCc------HHHHHHHHhCCCeEEEcCC-
Confidence 467899999999999999985 5556666677665443 224 776 4443 5678888888998877621
Q ss_pred hHHHHhccccEEEEcceeeecCCceecccchHHH--HHHHh
Q 008627 515 AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACV--AMVAY 553 (559)
Q Consensus 515 Avs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~I--ALaAk 553 (559)
.++|++|+|||.|-.++..+...|.+.+ +|+++
T Consensus 79 ------~~~D~af~Gadgvd~~~~~~~~~g~a~~kekiva~ 113 (227)
T 1uj6_A 79 ------EGVDLAIDGADEIAPGLALIKGMGGALLREKIVER 113 (227)
T ss_dssp ------TCEEEEEECCSEEEGGGEEECCTTSCHHHHHHHHH
T ss_pred ------CcCCEEEECCCccCccccEECCHHHHHHHHHHHHh
Confidence 3799999999999999855555555554 34444
No 11
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1
Probab=96.94 E-value=0.0015 Score=64.04 Aligned_cols=92 Identities=14% Similarity=0.205 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHH
Q 008627 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI 519 (559)
Q Consensus 440 A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~i 519 (559)
..+.|++.|+++|++|++|. ++.++|+..+++...+.+.+++|.|+-| ...+..|.+.||++..+ ..
T Consensus 6 ~K~~IA~~Aa~~I~dg~~I~-LdsGST~~~la~~L~~~~~~itv~VTnS------~~~a~~l~~~gi~vi~l--~~---- 72 (219)
T 1m0s_A 6 MKKLAAQAALQYVKADRIVG-VGSGSTVNCFIEALGTIKDKIQGAVAAS------KESEELLRKQGIEVFNA--ND---- 72 (219)
T ss_dssp HHHHHHHHHGGGCCTTSEEE-ECCSHHHHHHHHHHHTTGGGSCEEEESS------HHHHHHHHHTTCCBCCG--GG----
T ss_pred HHHHHHHHHHHhCCCCCEEE-EcChHHHHHHHHHHhccCCCEEEEECCh------HHHHHHHHhCCCeEEEe--Cc----
Confidence 46789999999999999887 7888888888887654311577645544 35677788888876553 21
Q ss_pred hccccEEEEcceeeecCCceecccc
Q 008627 520 IHEVTRVFLGASSVLSNGTVCSRVG 544 (559)
Q Consensus 520 M~~VdkVlLGAdaIlaNGsVvNKvG 544 (559)
+.++|+.|+|||.|-.+++++.--|
T Consensus 73 ~~~~D~af~Gadgid~~~g~~~~~~ 97 (219)
T 1m0s_A 73 VSSLDIYVDGADEINPQKMMIKGGG 97 (219)
T ss_dssp CSCEEEEEECCSEECTTSCEECCTT
T ss_pred cccCCEEEECcCeECCCCCeecCHH
Confidence 2589999999999998876655333
No 12
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=96.93 E-value=0.0014 Score=65.32 Aligned_cols=96 Identities=16% Similarity=0.125 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHh-cccCCCEEEEecCcHHHHHHHHHHHHh---C-C-ceEEEEcCCCCCchHHHHHHHHHhCCCceEEE
Q 008627 438 ILADRVIVKHAVT-KIRDGDVLLTYGSSSAVEMILQHAHEL---G-K-QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT 511 (559)
Q Consensus 438 ~~A~e~Ia~~Aa~-~I~dGdvILT~g~SstV~~iL~~A~e~---G-k-~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI 511 (559)
....+.|++.|++ +|++|++|. ++..+|+..++....+. + . .++| |+- +...+..|.+.||++..+
T Consensus 10 ~~~K~~iA~~Aa~~~I~dg~~Ig-LgsGST~~~~~~~L~~~~~~~~l~~itv-VTn------S~~~a~~l~~~gi~v~~l 81 (244)
T 2f8m_A 10 DSLKKIVAYKAVDEYVQSNMTIG-LGTGSTVFYVLERIDNLLKSGKLKDVVC-IPT------SIDTELKARKLGIPLTTL 81 (244)
T ss_dssp HHHHHHHHHHHHHHHCCTTCEEE-ECCSTTTHHHHHHHHHHHHHTSSCSCEE-EES------SHHHHHHHHHHTCCBCCC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEE-EcChHHHHHHHHHHhhhhhccCCCCEEE-ECC------cHHHHHHHHHCCCeEEEe
Confidence 3467889999999 999999887 78888888787776433 2 2 4665 443 345677777779987766
Q ss_pred ecchHHHHhccccEEEEcceeeecCCceecccchHH
Q 008627 512 HINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTAC 547 (559)
Q Consensus 512 ~DsAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~ 547 (559)
+ .+..+|+.|+|||.|-.+++++.--|-+.
T Consensus 82 --~----~~~~iD~afdGaDeId~~~glikg~g~Al 111 (244)
T 2f8m_A 82 --E----KHSNIDITIDGTDEIDLNLNLIKGRGGAL 111 (244)
T ss_dssp --C----SSCCBSEEEECCSEECTTCCEECCTTSCH
T ss_pred --c----ccCcCCEEEECCcccCCCCCcccCHHHHH
Confidence 2 34489999999999999977665555443
No 13
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=96.85 E-value=0.0035 Score=61.77 Aligned_cols=92 Identities=16% Similarity=0.173 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHh---CC--ceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc
Q 008627 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHEL---GK--QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN 514 (559)
Q Consensus 440 A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~---Gk--~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds 514 (559)
..+.|++.|+++|++|++|. ++.++|+..+++...+. +. .++| |+-| ...+..|.+.||++..+ .
T Consensus 6 ~K~~IA~~Aa~~I~dg~~I~-LdsGST~~~~a~~L~~~~~~~~l~~itv-VTnS------~~~a~~l~~~gi~vi~l--~ 75 (229)
T 1lk5_A 6 MKKIAAKEALKFIEDDMVIG-LGTGSTTAYFIKLLGEKLKRGEISDIVG-VPTS------YQAKLLAIEHDIPIASL--D 75 (229)
T ss_dssp HHHHHHHHHGGGCCTTCEEE-ECCSHHHHHHHHHHHHHHHTTSSCSCEE-EESS------HHHHHHHHHTTCCBCCG--G
T ss_pred HHHHHHHHHHHhCCCCCEEE-EcChHHHHHHHHHHhhhhhhccCCCEEE-ECCc------HHHHHHHHhCCCeEEEe--C
Confidence 46789999999999999887 78888888888776543 21 5665 4433 45677788888876553 2
Q ss_pred hHHHHhccccEEEEcceeeecCCceecccch
Q 008627 515 AISYIIHEVTRVFLGASSVLSNGTVCSRVGT 545 (559)
Q Consensus 515 Avs~iM~~VdkVlLGAdaIlaNGsVvNKvGT 545 (559)
. +.++|+.|+|||.|-.+++++.--|-
T Consensus 76 ~----~~~~D~af~Gadgid~~~g~~~~~~~ 102 (229)
T 1lk5_A 76 Q----VDAIDVAVDGADEVDPNLNLIKGRGA 102 (229)
T ss_dssp G----CSCEEEEEECCSEECTTCCEECCTTS
T ss_pred C----cccCCEEEECCCeECCCCCeecCHHH
Confidence 1 25899999999999988766554333
No 14
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=96.68 E-value=0.0028 Score=62.44 Aligned_cols=92 Identities=16% Similarity=0.189 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHH
Q 008627 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI 519 (559)
Q Consensus 440 A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~i 519 (559)
..+.|++.|+++|++|++|. ++.++|+..+++...+..+++++.|+-| ...+..|.+.||++..+- .
T Consensus 12 ~K~~iA~~A~~~V~~g~~Ig-lgsGST~~~~i~~L~~~~~~itv~VtnS------~~~a~~l~~~gi~l~~l~--~---- 78 (224)
T 3kwm_A 12 LKKLAATEAAKSITTEITLG-VGTGSTVGFLIEELVNYRDKIKTVVSSS------EDSTRKLKALGFDVVDLN--Y---- 78 (224)
T ss_dssp HHHHHHHHHHTTCCSSEEEE-ECCSHHHHHHHHHGGGCTTTEEEEEESC------HHHHHHHHHTTCCBCCHH--H----
T ss_pred HHHHHHHHHHHhCCCCCEEE-ECCcHHHHHHHHHHHhhcCceEEEECCc------HHHHHHHHHcCCeEEecC--c----
Confidence 46789999999999998655 5888888888887655445677756544 356778888999865432 2
Q ss_pred hccccEEEEcceeeecCCceecccc
Q 008627 520 IHEVTRVFLGASSVLSNGTVCSRVG 544 (559)
Q Consensus 520 M~~VdkVlLGAdaIlaNGsVvNKvG 544 (559)
+.++|+.|.|||.|-.++.++---|
T Consensus 79 ~~~iD~afdGADevd~~~~liKGgg 103 (224)
T 3kwm_A 79 AGEIDLYIDGADECNNHKELIKGGG 103 (224)
T ss_dssp HCSEEEEEECCSEECTTSCEECCSS
T ss_pred cccccEEEECCCccccccCeecCch
Confidence 2589999999999999988766333
No 15
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=96.34 E-value=0.0069 Score=59.70 Aligned_cols=92 Identities=16% Similarity=0.114 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHh----CCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecch
Q 008627 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHEL----GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA 515 (559)
Q Consensus 440 A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~----Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsA 515 (559)
..+.|++.|+++|++|++|. ++..+|+..++....+. +.++.+ |+-| ...+..|.+.||++..+.+
T Consensus 4 ~K~~iA~~A~~~V~dg~vIg-LGsGST~~~~i~~L~~~~~~~~~~i~~-VttS------~~t~~~l~~~Gi~l~~l~~-- 73 (225)
T 3l7o_A 4 LKKIAGVRAAQYVEDGMIVG-LGTGSTAYYFVEEVGRRVQEEGLQVIG-VTTS------SRTTAQAQALGIPLKSIDE-- 73 (225)
T ss_dssp HHHHHHHHHHTTCCTTCEEE-ECCSTTHHHHHHHHHHHHHHHCCCCEE-EESS------HHHHHHHHHHTCCBCCGGG--
T ss_pred HHHHHHHHHHHhCCCCCEEE-ECCcHHHHHHHHHHHHhhhhcCCCEEE-EcCC------HHHHHHHhccCceEEecCc--
Confidence 35789999999999999665 47777777777765442 455665 3333 3456677778998764322
Q ss_pred HHHHhccccEEEEcceeeecCCceecccch
Q 008627 516 ISYIIHEVTRVFLGASSVLSNGTVCSRVGT 545 (559)
Q Consensus 516 vs~iM~~VdkVlLGAdaIlaNGsVvNKvGT 545 (559)
..++|+.|.|||.|-.+..++---|.
T Consensus 74 ----~~~iD~a~dGADevd~~~~liKGgG~ 99 (225)
T 3l7o_A 74 ----VDSVDVTVDGADEVDPNFNGIKGGGG 99 (225)
T ss_dssp ----SSCEEEEEECCSEECTTSCEECCTTS
T ss_pred ----ccccCEEEEcCCccCcccCeecCchh
Confidence 35899999999999999887664443
No 16
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.0072 Score=60.85 Aligned_cols=93 Identities=22% Similarity=0.224 Sum_probs=66.5
Q ss_pred HHHHHHHHHHh-ccc--CCCEEEEecCcHHHHHHHHHHHHh---CC------ceEEEEcCCCCCchHHHHHHHHHhCCCc
Q 008627 440 ADRVIVKHAVT-KIR--DGDVLLTYGSSSAVEMILQHAHEL---GK------QFRVVIVDSRPKHEGKLLLRRLVRKGLS 507 (559)
Q Consensus 440 A~e~Ia~~Aa~-~I~--dGdvILT~g~SstV~~iL~~A~e~---Gk------~FrViVvESRP~~EG~~LAk~L~~~GI~ 507 (559)
..++|++.|++ +|. +|++|. ++.++|+..+++...+. +. .++| |+- +...+..|.+.||+
T Consensus 21 ~K~~IA~~Aa~~~I~~~dg~~Ig-LgsGST~~~~a~~L~~~~~~~~l~~~~~~itv-VTn------S~~~a~~l~~~gi~ 92 (264)
T 1xtz_A 21 AKRAAAYRAVDENLKFDDHKIIG-IGSGSTVVYVAERIGQYLHDPKFYEVASKFIC-IPT------GFQSRNLILDNKLQ 92 (264)
T ss_dssp HHHHHHHHHHHHHCCTTTCCEEE-ECCCSSTHHHHHHHHHHHTSTTTHHHHTTCEE-EES------SHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHhccCCCCCCEEE-EcChHHHHHHHHHHhHhhhccccccccCCEEE-ECC------cHHHHHHHHHCCCe
Confidence 46789999998 999 999887 77778877777776543 21 3655 443 34567778888887
Q ss_pred eEEEecchHHHHhccccEEEEcceeeecCCceecccchH
Q 008627 508 CTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTA 546 (559)
Q Consensus 508 vTyI~DsAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~ 546 (559)
+..+ . .+..+|+.|+|||.|-.++.++.--|-+
T Consensus 93 v~~l--~----~~~~iD~afdGADgId~~~~likg~g~A 125 (264)
T 1xtz_A 93 LGSI--E----QYPRIDIAFDGADEVDENLQLIKGGGAC 125 (264)
T ss_dssp ECCT--T----TCCSEEEEEECCSEECTTSCEECCTTSC
T ss_pred EEEe--h----hcCcCCEEEECCcccCCCCCeecCHHHH
Confidence 6544 2 2258999999999999887665554433
No 17
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=96.16 E-value=0.026 Score=55.58 Aligned_cols=90 Identities=17% Similarity=0.124 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHh----CCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecch
Q 008627 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHEL----GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA 515 (559)
Q Consensus 440 A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~----Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsA 515 (559)
..+.|++.|+++|++|++|. ++.++|+..++....+. +..+++ |+- +...+..|.+.||++.- .+.
T Consensus 6 ~K~~iA~~A~~~I~~g~~Ig-lgsGST~~~~~~~L~~~~~~~~l~itv-Vtn------S~~~a~~l~~~gi~v~~--l~~ 75 (226)
T 2pjm_A 6 LKLKVAKEAVKLVKDGMVIG-LGTGSTAALFIRELGNRIREEELTVFG-IPT------SFEAKMLAMQYEIPLVT--LDE 75 (226)
T ss_dssp HHHHHHHHHGGGCCTTCEEE-ECCSHHHHHHHHHHHHHHHHHTCCCEE-EES------SHHHHHHHHHTTCCBCC--TTT
T ss_pred HHHHHHHHHHHHCCCCCEEE-ECCCHHHHHHHHHHHhhhhccCCcEEE-EeC------cHHHHHHHHhcCCeEEe--ecc
Confidence 46789999999999998665 57777777777765432 334553 332 34567778889998662 222
Q ss_pred HHHHhccccEEEEcceeeecC-Cceecccc
Q 008627 516 ISYIIHEVTRVFLGASSVLSN-GTVCSRVG 544 (559)
Q Consensus 516 vs~iM~~VdkVlLGAdaIlaN-GsVvNKvG 544 (559)
+. +|+.|.|||.|-.+ +.++---|
T Consensus 76 ----~~-iD~afdGaDevd~~t~~likGgg 100 (226)
T 2pjm_A 76 ----YD-VDIAFDGADEVEETTLFLIKGGG 100 (226)
T ss_dssp ----CC-CSEEEECCSEEETTTCCEECCTT
T ss_pred ----cc-CCEEEEcCceeccccCceeeccc
Confidence 33 99999999999999 76654434
No 18
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Probab=96.05 E-value=0.0011 Score=64.88 Aligned_cols=92 Identities=13% Similarity=0.152 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHH
Q 008627 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI 519 (559)
Q Consensus 440 A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~i 519 (559)
..+.|++.|+++|++|++|. ++.++|+..+++...+...+++|.|+-|-+ .+..|.+.||++..+ ..
T Consensus 6 ~K~~IA~~Aa~lI~dg~~I~-LdsGST~~~la~~L~~~~~~itv~VTnS~~------~a~~l~~~gi~vi~l--~~---- 72 (219)
T 1o8b_A 6 LKKAVGWAALQYVQPGTIVG-VGTGSTAAHFIDALGTMKGQIEGAVSSSDA------STEKLKSLGIHVFDL--NE---- 72 (219)
T ss_dssp -----------------CEE-ECCSCC---------------CCEEESCCC------------------CCG--GG----
T ss_pred HHHHHHHHHHHhCCCCCEEE-EcChHHHHHHHHHHhccCCCEEEEECCcHH------HHHHHHhCCCeEEEe--Cc----
Confidence 45789999999999999887 677777777777664331145654665542 345555567665433 32
Q ss_pred hccccEEEEcceeeecCCceecccc
Q 008627 520 IHEVTRVFLGASSVLSNGTVCSRVG 544 (559)
Q Consensus 520 M~~VdkVlLGAdaIlaNGsVvNKvG 544 (559)
+.++|+.|+|||.|-.++.++.--|
T Consensus 73 ~~~~D~af~Gadgid~~~~~~~~~~ 97 (219)
T 1o8b_A 73 VDSLGIYVDGADEINGHMQMIKGGG 97 (219)
T ss_dssp CSCEEEEEECCSEECTTSCEECCCC
T ss_pred cCcCCEEEECcceECCCCCeecCHH
Confidence 2589999999999998877664333
No 19
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=96.03 E-value=0.011 Score=59.41 Aligned_cols=88 Identities=17% Similarity=0.130 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHH---hCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchH
Q 008627 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHE---LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAI 516 (559)
Q Consensus 440 A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e---~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAv 516 (559)
..+.|++.|+++|++|++|. +|..+|+..+++...+ .|.++.+ |.- +...+..|.+.||++..+-+
T Consensus 27 ~K~~iA~~A~~~V~dg~vIg-LGsGST~~~~i~~L~~~~~~gl~Itv-Vtt------S~~ta~~l~~~GI~l~~l~~--- 95 (255)
T 3hhe_A 27 LKKMAALKALEFVEDDMRLG-IGSGSTVNEFIPLLGERVANGLRVTC-VAT------SQYSEQLCHKFGVPISTLEK--- 95 (255)
T ss_dssp HHHHHHHHHHTTCCTTEEEE-ECCSHHHHHHHHHHHHHHHTTCCEEE-EES------SHHHHHHHHHTTCCBCCTTT---
T ss_pred HHHHHHHHHHHhCCCCCEEE-ECCcHHHHHHHHHHHHhhccCCcEEE-EcC------CHHHHHHHHHcCCcEEeccc---
Confidence 35679999999999998654 5888888877776543 2334443 332 34567788889998765422
Q ss_pred HHHhccccEEEEcceeeecCCceec
Q 008627 517 SYIIHEVTRVFLGASSVLSNGTVCS 541 (559)
Q Consensus 517 s~iM~~VdkVlLGAdaIlaNGsVvN 541 (559)
+.++|+.|.|||.|-.+..++-
T Consensus 96 ---~~~iD~afdGADeVD~~~~lIK 117 (255)
T 3hhe_A 96 ---IPELDLDIDGADEIGPEMTLIK 117 (255)
T ss_dssp ---CCSBSEEEECCSEECGGGCEEC
T ss_pred ---ccccCEEEECCCccccccCeee
Confidence 3479999999999999877765
No 20
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A*
Probab=95.18 E-value=0.03 Score=55.72 Aligned_cols=89 Identities=18% Similarity=0.283 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhcccC----CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecch
Q 008627 440 ADRVIVKHAVTKIRD----GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA 515 (559)
Q Consensus 440 A~e~Ia~~Aa~~I~d----GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsA 515 (559)
..+.|++.|+++|++ |++| =+|..+|+..++....+..+.+..+|.-| ...+..|.+.||++..+- .
T Consensus 14 ~K~~aA~~A~~~V~d~~~~g~vI-GLGtGST~~~~i~~L~~~~~~i~~~V~tS------~~t~~~~~~~Gi~l~~l~--~ 84 (239)
T 3uw1_A 14 LKRLVGEAAARYVTDNVPQGAVI-GVGTGSTANCFIDALAAVKDRYRGAVSSS------VATTERLKSHGIRVFDLN--E 84 (239)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCEE-EECCSHHHHHHHHHHHTTGGGSCEEEESS------HHHHHHHHHTTCCBCCGG--G
T ss_pred HHHHHHHHHHHHhhccCcCCCEE-EECccHHHHHHHHHHHhhhccceEEeCCc------HHHHHHHHHcCCcEEecc--c
Confidence 356677788888887 8855 45888888888887765433555444433 456778888999876432 1
Q ss_pred HHHHhccccEEEEcceeeecCCceec
Q 008627 516 ISYIIHEVTRVFLGASSVLSNGTVCS 541 (559)
Q Consensus 516 vs~iM~~VdkVlLGAdaIlaNGsVvN 541 (559)
..++|+.|.|||-|-.++.++-
T Consensus 85 ----~~~iD~a~DGADeVd~~l~lIK 106 (239)
T 3uw1_A 85 ----IESLQVYVDGADEIDESGAMIK 106 (239)
T ss_dssp ----CSCEEEEEECCSEECTTCCEEC
T ss_pred ----ccccCEEEECCcccCcccCEec
Confidence 2589999999999999987765
No 21
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=83.75 E-value=4.7 Score=39.75 Aligned_cols=91 Identities=18% Similarity=0.194 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHH----hCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecch
Q 008627 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHE----LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA 515 (559)
Q Consensus 440 A~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e----~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsA 515 (559)
..+..++.|+++|++|. |+=+|.-+||..++....+ .+. .+.++-| ..+....+.+.||++.-+.+
T Consensus 7 ~K~~aa~~A~~~V~~gm-vvGlGTGSTv~~~i~~L~~~~~~~~l--~i~~V~t-----S~~t~~~a~~~Gi~l~~l~~-- 76 (228)
T 4gmk_A 7 LKQLVGTKAVEWIKDGM-IVGLGTGSTVKYMVDALGKRVNEEGL--DIVGVTT-----SIRTAEQAKSLGIVIKDIDE-- 76 (228)
T ss_dssp HHHHHHHHHGGGCCTTC-EEEECCSHHHHHHHHHHHHHHHHHCC--CCEEEES-----SHHHHHHHHHTTCCBCCGGG--
T ss_pred HHHHHHHHHHHhCCCCC-EEEECchHHHHHHHHHHHHHHhhcCC--cEEEEeC-----cHHHHHHHHHcCCceeChHH--
Confidence 45677888999999986 6678888999888887543 233 3433322 23455666778998765443
Q ss_pred HHHHhccccEEEEcceeeecCCceecccc
Q 008627 516 ISYIIHEVTRVFLGASSVLSNGTVCSRVG 544 (559)
Q Consensus 516 vs~iM~~VdkVlLGAdaIlaNGsVvNKvG 544 (559)
..++|..|=|||-|-.|..++--=|
T Consensus 77 ----~~~iD~~iDGADEvd~~l~lIKGGG 101 (228)
T 4gmk_A 77 ----VDHIDLTIDGADEISSDFQGIKGGG 101 (228)
T ss_dssp ----SSCEEEEEECCSEECTTSCEECCTT
T ss_pred ----CCccceEeccHHHhhhchhhhhcch
Confidence 3479999999999999987765444
No 22
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=77.96 E-value=11 Score=37.93 Aligned_cols=103 Identities=10% Similarity=0.066 Sum_probs=58.4
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHH--HhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc---------hHHHHh
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAH--ELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYII 520 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~--e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds---------Avs~iM 520 (559)
+...++++|-|.+..+..++.... +.|...+|++. .|.+.+...+ +...|+.+.++... ++-..+
T Consensus 103 ~~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~--~p~~~~~~~~--~~~~g~~~~~v~~~~~~~~~d~~~l~~~l 178 (437)
T 3g0t_A 103 IPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFI--DPGFNLNKLQ--CRILGQKFESFDLFEYRGEKLREKLESYL 178 (437)
T ss_dssp CCGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEE--ESCCHHHHHH--HHHHTCCCEEEEGGGGCTTHHHHHHHHHH
T ss_pred CCcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEe--CCCcHhHHHH--HHHcCCEEEEEeecCCCCccCHHHHHHHH
Confidence 344578888877777766666554 44442256655 4677665433 33457888877632 233334
Q ss_pred --ccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 521 --HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 521 --~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.++..|++ +.---..|.++..---..|+-+|++||+.+
T Consensus 179 ~~~~~~~v~l-~~p~nptG~~~~~~~l~~i~~~a~~~~~~l 218 (437)
T 3g0t_A 179 QTGQFCSIIY-SNPNNPTWQCMTDEELRIIGELATKHDVIV 218 (437)
T ss_dssp TTTCCCEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred hcCCceEEEE-eCCCCCCCCcCCHHHHHHHHHHHHHCCcEE
Confidence 24566655 222233455554433445677888888753
No 23
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=77.70 E-value=18 Score=32.39 Aligned_cols=37 Identities=0% Similarity=-0.193 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcc
Q 008627 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (559)
Q Consensus 493 EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGA 530 (559)
+-.++++.+.+.|+++..|+++.-+ +.+.+|.+|.-.
T Consensus 97 ~~~~~~~~ak~~g~~vi~IT~~~~s-l~~~ad~~l~~~ 133 (180)
T 1jeo_A 97 SVLTVAKKAKNINNNIIAIVCECGN-VVEFADLTIPLE 133 (180)
T ss_dssp HHHHHHHHHHTTCSCEEEEESSCCG-GGGGCSEEEECC
T ss_pred HHHHHHHHHHHCCCcEEEEeCCCCh-HHHhCCEEEEeC
Confidence 4456688888999999999998777 777899887644
No 24
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=77.32 E-value=6.1 Score=39.01 Aligned_cols=96 Identities=16% Similarity=0.118 Sum_probs=61.3
Q ss_pred CEEEEecCcHHHHHH-HHHHHHhCCceEEEEcCCCC--CchHHHHHHHHHhCCCceEEEec---chHHHHhccccEEEEc
Q 008627 456 DVLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRP--KHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHEVTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~i-L~~A~e~Gk~FrViVvESRP--~~EG~~LAk~L~~~GI~vTyI~D---sAvs~iM~~VdkVlLG 529 (559)
.+||..|-++.+-.. +..+.+.| ++|+++.-.+ ..+-...+..|...|+.+..... ..+..++.+. |
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~~~g--~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~-----~ 83 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASLDAH--RPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEH-----E 83 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHHHTT--CCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHT-----T
T ss_pred CeEEEECCCcHHHHHHHHHHHHCC--CCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhC-----C
Confidence 579999998877544 44445555 5677665444 22333456677778877655433 3455666621 4
Q ss_pred ceeeecCCceecccchHHHHHHHhhCC-CC
Q 008627 530 ASSVLSNGTVCSRVGTACVAMVAYGFH-IP 558 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~~IALaAk~~~-VP 558 (559)
+|.|+.+.+..|-.|+..+.-+|+..+ ++
T Consensus 84 ~d~Vi~~a~~~n~~~~~~l~~aa~~~g~v~ 113 (346)
T 3i6i_A 84 IDIVVSTVGGESILDQIALVKAMKAVGTIK 113 (346)
T ss_dssp CCEEEECCCGGGGGGHHHHHHHHHHHCCCS
T ss_pred CCEEEECCchhhHHHHHHHHHHHHHcCCce
Confidence 445555555678999999999998877 54
No 25
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=72.43 E-value=28 Score=32.13 Aligned_cols=37 Identities=8% Similarity=-0.105 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEc
Q 008627 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (559)
Q Consensus 493 EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLG 529 (559)
+-.++++.+.+.|+++..|+++.-+.+.+.+|.+|.-
T Consensus 104 ~~i~~~~~ak~~g~~vI~IT~~~~s~La~~ad~~l~~ 140 (200)
T 1vim_A 104 SVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVV 140 (200)
T ss_dssp HHHHHHHHHHHHTCEEEEEESCTTSHHHHHCSEEEEC
T ss_pred HHHHHHHHHHHCCCeEEEEECCCCChHHHhCCEEEEE
Confidence 4556788888999999999998888888889998863
No 26
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori}
Probab=72.01 E-value=8.1 Score=37.92 Aligned_cols=22 Identities=14% Similarity=-0.022 Sum_probs=19.2
Q ss_pred cccEEEEcceeeecCCceeccc
Q 008627 522 EVTRVFLGASSVLSNGTVCSRV 543 (559)
Q Consensus 522 ~VdkVlLGAdaIlaNGsVvNKv 543 (559)
.+|..|+.|..+-.+|.+.-..
T Consensus 151 ~~DvAli~a~~aD~~GN~~~~~ 172 (235)
T 3rrl_A 151 TGDYGLIKAYKSDTLGNLVFRK 172 (235)
T ss_dssp CEEEEEEECSEEETTCCEECCG
T ss_pred CCeEEEEEeeecCCCceEEEec
Confidence 6899999999999999987543
No 27
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=71.93 E-value=4.2 Score=46.06 Aligned_cols=48 Identities=25% Similarity=0.304 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhCCceEEEEcCCCCCch--HHHHHHHHHhCCCceEEEe
Q 008627 465 SAVEMILQHAHELGKQFRVVIVDSRPKHE--GKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 465 stV~~iL~~A~e~Gk~FrViVvESRP~~E--G~~LAk~L~~~GI~vTyI~ 512 (559)
+-|...|..|+++|++.+|+|--.....| ....++.|.++|+.|.|-.
T Consensus 384 s~Iv~ALi~AA~rGv~V~vLvel~arfdee~ni~wa~~Le~aGv~Vv~g~ 433 (705)
T 2o8r_A 384 SSIISALEAAAQSGKKVSVFVELKARFDEENNLRLSERMRRSGIRIVYSM 433 (705)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECCCSCC----CHHHHHHHHHHTCEEEECC
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCCCCcchhhhHHHHHHHHHCCCEEEEcc
Confidence 56667888888899999988864333334 6778999999999998853
No 28
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=71.38 E-value=3.8 Score=42.82 Aligned_cols=77 Identities=21% Similarity=0.261 Sum_probs=53.3
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcc
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGA 530 (559)
.|..|.+||..|....-.++++.|++.| ++|+++|..|..-+..++ +.-+...|....++-.+..++|.|+.|-
T Consensus 31 ~~~~~~~IlIlG~G~lg~~~~~aa~~lG--~~v~v~d~~~~~p~~~~a----d~~~~~~~~d~~~l~~~a~~~D~V~~~~ 104 (419)
T 4e4t_A 31 PILPGAWLGMVGGGQLGRMFCFAAQSMG--YRVAVLDPDPASPAGAVA----DRHLRAAYDDEAALAELAGLCEAVSTEF 104 (419)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCTTCHHHHHS----SEEECCCTTCHHHHHHHHHHCSEEEECC
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCCcCchhhhC----CEEEECCcCCHHHHHHHHhcCCEEEEcc
Confidence 5778999999999988888888888765 678888887776655443 2211111112235666667899999887
Q ss_pred eee
Q 008627 531 SSV 533 (559)
Q Consensus 531 daI 533 (559)
+.+
T Consensus 105 e~~ 107 (419)
T 4e4t_A 105 ENV 107 (419)
T ss_dssp TTC
T ss_pred CcC
Confidence 655
No 29
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=70.56 E-value=6.6 Score=39.40 Aligned_cols=102 Identities=17% Similarity=0.161 Sum_probs=68.4
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceeee
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIl 534 (559)
-|+++.+-....+..++..|.+.|.+.-|++.+.-|..+-.++.+...+.|+ .++-.|.++.+-+...+...-...+.
T Consensus 71 ~Dv~ii~vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi--~viGPNc~Gii~~~~~~~~~~~~~~~ 148 (294)
T 2yv1_A 71 ANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGV--KIIGPNTPGIASPKVGKLGIIPMEVL 148 (294)
T ss_dssp CCEEEECCCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTC--EEECSSCCEEEETTTEEEECCCGGGC
T ss_pred CCEEEEccCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEEcCCCceeeccCcceeeecccCCC
Confidence 4888888888999999999999887765666666665555566666667776 46656666666554433333223334
Q ss_pred cCC--ceecccchHHHHHH--HhhCCCC
Q 008627 535 SNG--TVCSRVGTACVAMV--AYGFHIP 558 (559)
Q Consensus 535 aNG--sVvNKvGT~~IALa--Ak~~~VP 558 (559)
.-| +++++.||...+++ +...++.
T Consensus 149 ~~G~va~vSqSG~l~~~~~~~~~~~g~G 176 (294)
T 2yv1_A 149 KEGSVGMVSRSGTLTYEIAHQIKKAGFG 176 (294)
T ss_dssp CEEEEEEEESCSHHHHHHHHHHHHTTCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCC
Confidence 445 58999999988774 4455543
No 30
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=70.38 E-value=43 Score=29.97 Aligned_cols=38 Identities=13% Similarity=0.103 Sum_probs=31.7
Q ss_pred hHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcc
Q 008627 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (559)
Q Consensus 493 EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGA 530 (559)
+-.++++.+.+.|+++..|+++.-+.+-+.+|.+|.-.
T Consensus 102 ~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~ 139 (187)
T 3sho_A 102 DTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVAA 139 (187)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEEECC
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEEEec
Confidence 45567888899999999999988888888899988743
No 31
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii}
Probab=69.57 E-value=7.8 Score=38.14 Aligned_cols=82 Identities=16% Similarity=0.173 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhC--CceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHH
Q 008627 441 DRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELG--KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY 518 (559)
Q Consensus 441 ~e~Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~G--k~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~ 518 (559)
.+..++.|+++|++|. |+=+|.-+||..++....+.. ....|+.+-+. .+....+.+.||+++.+.+ +
T Consensus 7 K~~aa~~A~~~V~~gm-vvGlGTGSTv~~~I~~L~~~~~~~~l~i~~v~tS-----~~t~~~a~~~gi~l~~l~~--~-- 76 (226)
T 3ixq_A 7 KLKVAKEAVKLVKDGM-VIGLGTGSTAALFIRELGNRIREEELTVFGIPTS-----FEAKMLAMQYEIPLVTLDE--Y-- 76 (226)
T ss_dssp HHHHHHHHGGGCCTTC-EEEECCSHHHHHHHHHHHHHHHHHTCCCEEEESS-----HHHHHHHHHTTCCBCCTTT--C--
T ss_pred HHHHHHHHHHhCCCCC-EEEeCcHHHHHHHHHHHHHhhhhcCCeeEeeccc-----HHHHHHHHhcCCCcccccc--c--
Confidence 4567888999999987 667888999988888765321 12345544332 2334455568998765432 1
Q ss_pred HhccccEEEEcceeeec
Q 008627 519 IIHEVTRVFLGASSVLS 535 (559)
Q Consensus 519 iM~~VdkVlLGAdaIla 535 (559)
++|..|=|||-|-.
T Consensus 77 ---~iDl~iDGADEvd~ 90 (226)
T 3ixq_A 77 ---DVDIAFDGADEVEE 90 (226)
T ss_dssp ---CCSEEEECCSEEET
T ss_pred ---cccEEEeCcchhcc
Confidence 38999999999974
No 32
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=69.09 E-value=9 Score=35.49 Aligned_cols=96 Identities=18% Similarity=0.151 Sum_probs=53.6
Q ss_pred CCCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCC-ceEEEec--chHHHHhccccEEEEc
Q 008627 454 DGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGL-SCTYTHI--NAISYIIHEVTRVFLG 529 (559)
Q Consensus 454 dGdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI-~vTyI~D--sAvs~iM~~VdkVlLG 529 (559)
.|.+||..|-|+-+- .+.+.+.++| .+|+++.-++.. +..|...++ .+ +..| ..+...+..+|.||--
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G--~~V~~~~R~~~~-----~~~~~~~~~~~~-~~~Dl~~~~~~~~~~~D~vi~~ 91 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKG--HEPVAMVRNEEQ-----GPELRERGASDI-VVANLEEDFSHAFASIDAVVFA 91 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSGGG-----HHHHHHTTCSEE-EECCTTSCCGGGGTTCSEEEEC
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCC--CeEEEEECChHH-----HHHHHhCCCceE-EEcccHHHHHHHHcCCCEEEEC
Confidence 467899999987774 4455555555 577777644332 334555566 33 3334 2344445556666554
Q ss_pred ceeeecCC----ceecccchHHHHHHHhhCCC
Q 008627 530 ASSVLSNG----TVCSRVGTACVAMVAYGFHI 557 (559)
Q Consensus 530 AdaIlaNG----sVvNKvGT~~IALaAk~~~V 557 (559)
|-....+. .-+|-.||..+.-+|+..++
T Consensus 92 ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~ 123 (236)
T 3e8x_A 92 AGSGPHTGADKTILIDLWGAIKTIQEAEKRGI 123 (236)
T ss_dssp CCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCccccchhhHHHHHHHHHHHHHcCC
Confidence 42211000 01267788888888877664
No 33
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=68.82 E-value=7.3 Score=38.98 Aligned_cols=102 Identities=18% Similarity=0.149 Sum_probs=69.8
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceee
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaI 533 (559)
+-|+++.+-....+..++..|.+.|.+.-|++.+.-|..+-.++.+...+.|+ .++-.|.++.+.+...+.......+
T Consensus 64 ~~Dv~Ii~vp~~~~~~~~~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi--~vigPNc~Gii~~~~~~~~~~~~~~ 141 (288)
T 1oi7_A 64 EVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGS--RLIGGNCPGIISAEETKIGIMPGHV 141 (288)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTC--EEEESSSCEEEETTTEEEESSCGGG
T ss_pred CCCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEEeCCCCeEEcCCCceeEEcccCC
Confidence 34888888888999999999999887766666776665444566666666776 4666777777666544443333333
Q ss_pred ecCC--ceecccchHHHHHH--HhhCCC
Q 008627 534 LSNG--TVCSRVGTACVAMV--AYGFHI 557 (559)
Q Consensus 534 laNG--sVvNKvGT~~IALa--Ak~~~V 557 (559)
..-| +++++.||...+++ +...++
T Consensus 142 ~~~G~va~vsqSG~l~~~~~~~~~~~g~ 169 (288)
T 1oi7_A 142 FKRGRVGIISRSGTLTYEAAAALSQAGL 169 (288)
T ss_dssp CCEEEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHhCCC
Confidence 4445 58999999988876 444554
No 34
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=67.48 E-value=35 Score=30.58 Aligned_cols=37 Identities=11% Similarity=-0.184 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEc
Q 008627 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (559)
Q Consensus 493 EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLG 529 (559)
+-.++++.+.+.|+++..|+++.-+.+-+.+|.+|.-
T Consensus 94 ~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~ 130 (186)
T 1m3s_A 94 SLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRM 130 (186)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCchHHhCCEEEEe
Confidence 4556788899999999999998777777789988753
No 35
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=67.42 E-value=14 Score=35.36 Aligned_cols=98 Identities=10% Similarity=0.036 Sum_probs=56.7
Q ss_pred CEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCC---chHHHHHHHHHhCCCceEEEe--c-chHHHHhccccEEEE
Q 008627 456 DVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPK---HEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVFL 528 (559)
Q Consensus 456 dvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~---~EG~~LAk~L~~~GI~vTyI~--D-sAvs~iM~~VdkVlL 528 (559)
.+||..|-++.+- .++..+.+.| ++|+++.-.+. .+..+.+..|...|+.+.... | .++..++..+|.||.
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~ 82 (313)
T 1qyd_A 5 SRVLIVGGTGYIGKRIVNASISLG--HPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS 82 (313)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTT--CCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhCC--CcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEE
Confidence 4688888876654 4444445555 56776654432 122333455666676543322 1 456677777887776
Q ss_pred cceeeecCCceecccchHHHHHHHhhCC-CC
Q 008627 529 GASSVLSNGTVCSRVGTACVAMVAYGFH-IP 558 (559)
Q Consensus 529 GAdaIlaNGsVvNKvGT~~IALaAk~~~-VP 558 (559)
-+-.... + .|-.|+..+.-+|+..+ +.
T Consensus 83 ~a~~~~~-~--~~~~~~~~l~~aa~~~g~v~ 110 (313)
T 1qyd_A 83 ALAGGVL-S--HHILEQLKLVEAIKEAGNIK 110 (313)
T ss_dssp CCCCSSS-S--TTTTTHHHHHHHHHHSCCCS
T ss_pred CCccccc-h--hhHHHHHHHHHHHHhcCCCc
Confidence 5432211 1 26678888888888877 53
No 36
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=66.30 E-value=4.5 Score=33.65 Aligned_cols=57 Identities=14% Similarity=0.094 Sum_probs=39.9
Q ss_pred EEEEecCcHHHHHHHHHHHHhCCceEEEEcCCC-CCchHHHHHHHHHh------CCCceEEEec
Q 008627 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR-PKHEGKLLLRRLVR------KGLSCTYTHI 513 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~Gk~FrViVvESR-P~~EG~~LAk~L~~------~GI~vTyI~D 513 (559)
.|.+..........|......+..+.++++|-. |...|..+++.|.+ ..+++.+++.
T Consensus 37 ~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~ 100 (146)
T 3ilh_A 37 EIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQPMKNKSIVCLLSS 100 (146)
T ss_dssp EEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGGGTTTCEEEEECS
T ss_pred eeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhhhccCCCeEEEEeC
Confidence 555565555555666655555677899999854 88899999999988 3456666654
No 37
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=65.60 E-value=27 Score=34.47 Aligned_cols=101 Identities=18% Similarity=0.152 Sum_probs=56.5
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc-------hHHHHhc-cc
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------AISYIIH-EV 523 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds-------Avs~iM~-~V 523 (559)
+....+++|-|.+..+..++....+.| -+|++.+ |.+.+.. ..+...|+++.++... .+..+-. ++
T Consensus 89 ~~~~~v~~t~g~~~al~~~~~~l~~~g--d~vl~~~--p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~ 162 (391)
T 3h14_A 89 LDPGRVVITPGSSGGFLLAFTALFDSG--DRVGIGA--PGYPSYR--QILRALGLVPVDLPTAPENRLQPVPADFAGLDL 162 (391)
T ss_dssp CCGGGEEEESSHHHHHHHHHHHHCCTT--CEEEEEE--SCCHHHH--HHHHHTTCEEEEEECCGGGTTSCCHHHHTTSCC
T ss_pred CCHHHEEEecChHHHHHHHHHHhcCCC--CEEEEcC--CCCccHH--HHHHHcCCEEEEeecCcccCCCCCHHHHHhcCC
Confidence 344577888777777766666554434 3555543 6666654 3344578888888643 1222222 34
Q ss_pred cEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 524 dkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
..|++- ..--..|.++..---..|+-+|++|++.|
T Consensus 163 ~~v~i~-~p~nptG~~~~~~~l~~l~~~~~~~~~~l 197 (391)
T 3h14_A 163 AGLMVA-SPANPTGTMLDHAAMGALIEAAQAQGASF 197 (391)
T ss_dssp SEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred eEEEEC-CCCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence 555543 22223455554444456777888888753
No 38
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=65.47 E-value=20 Score=35.12 Aligned_cols=100 Identities=9% Similarity=0.152 Sum_probs=56.4
Q ss_pred cCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc------------hHHHHh
Q 008627 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN------------AISYII 520 (559)
Q Consensus 453 ~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds------------Avs~iM 520 (559)
....+++|-|.+..+..++..+.+.| -+|++.+ |.+.+... .+...|+.+.++... .+-..+
T Consensus 89 ~~~~v~~~~g~~~a~~~~~~~~~~~g--d~vl~~~--~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l 162 (391)
T 4dq6_A 89 KSEWLIYSPGVIPAISLLINELTKAN--DKIMIQE--PVYSPFNS--VVKNNNRELIISPLQKLENGNYIMDYEDIENKI 162 (391)
T ss_dssp CGGGEEEESCHHHHHHHHHHHHSCTT--CEEEECS--SCCTHHHH--HHHHTTCEEEECCCEECTTSCEECCHHHHHHHC
T ss_pred cHHHeEEcCChHHHHHHHHHHhCCCC--CEEEEcC--CCCHHHHH--HHHHcCCeEEeeeeeecCCCceEeeHHHHHHHh
Confidence 34467777777777766666554333 3555543 67766544 233467777766532 333444
Q ss_pred ccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 521 HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 521 ~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.+ .++++=.+.--..|.++..---..|+-+|++||+.+
T Consensus 163 ~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~l 200 (391)
T 4dq6_A 163 KD-VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKI 200 (391)
T ss_dssp TT-EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEE
T ss_pred hc-CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEE
Confidence 44 444332333334455555555556777888888753
No 39
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=65.19 E-value=16 Score=34.82 Aligned_cols=93 Identities=13% Similarity=0.078 Sum_probs=52.2
Q ss_pred CCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCC-C--c--hHHHHHHHHHhCCCceEEEec---chHHHHhccccE
Q 008627 455 GDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRP-K--H--EGKLLLRRLVRKGLSCTYTHI---NAISYIIHEVTR 525 (559)
Q Consensus 455 GdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP-~--~--EG~~LAk~L~~~GI~vTyI~D---sAvs~iM~~Vdk 525 (559)
+.+||..|-++.+- .++..+.+.| ++|+++.-++ . . +-...++.|...|+.+..... .++..+++.+|.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~ 79 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAG--NPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDI 79 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHT--CCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCC--CcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCE
Confidence 34688888876553 4444445556 4566654333 1 1 222334566677876544322 356666777776
Q ss_pred EEEcceeeecCCceecccchHHHHHHHhhCC
Q 008627 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFH 556 (559)
Q Consensus 526 VlLGAdaIlaNGsVvNKvGT~~IALaAk~~~ 556 (559)
||.-| +...-.|+..+.-+|+..+
T Consensus 80 vi~~a-------~~~~~~~~~~l~~aa~~~g 103 (307)
T 2gas_A 80 VICAA-------GRLLIEDQVKIIKAIKEAG 103 (307)
T ss_dssp EEECS-------SSSCGGGHHHHHHHHHHHC
T ss_pred EEECC-------cccccccHHHHHHHHHhcC
Confidence 66543 2333557777777777665
No 40
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=64.85 E-value=42 Score=26.94 Aligned_cols=88 Identities=16% Similarity=0.096 Sum_probs=53.1
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---chHHHHhccccEEEEcce
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHEVTRVFLGAS 531 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D---sAvs~iM~~VdkVlLGAd 531 (559)
+.+|+..|....=..++..+.+.| .++|++++-.+. -+..+...|+....... ..+..++.++|.||..+
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g-~~~v~~~~r~~~-----~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~- 77 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSS-NYSVTVADHDLA-----ALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAA- 77 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCS-SEEEEEEESCHH-----HHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECS-
T ss_pred cCeEEEECCCHHHHHHHHHHHhCC-CceEEEEeCCHH-----HHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECC-
Confidence 357888888444355555555554 368888875432 23344456666543322 34556677888888765
Q ss_pred eeecCCceecccchHHHHHHHhhCCCC
Q 008627 532 SVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 532 aIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
| -..+..++..|...+++
T Consensus 78 -----~----~~~~~~~~~~~~~~g~~ 95 (118)
T 3ic5_A 78 -----P----FFLTPIIAKAAKAAGAH 95 (118)
T ss_dssp -----C----GGGHHHHHHHHHHTTCE
T ss_pred -----C----chhhHHHHHHHHHhCCC
Confidence 1 12356777777777764
No 41
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=64.33 E-value=14 Score=33.64 Aligned_cols=93 Identities=9% Similarity=0.055 Sum_probs=54.5
Q ss_pred EEEEecCcHHHHHHH-HHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe--c--chHHHHhccccEEEEcce
Q 008627 457 VLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I--NAISYIIHEVTRVFLGAS 531 (559)
Q Consensus 457 vILT~g~SstV~~iL-~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~--D--sAvs~iM~~VdkVlLGAd 531 (559)
+||..|-++.+-..| +.+.++| ++|+++.-++...- .+ .++.+.... | ..+..++.++|.||--|-
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~-----~~--~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag 72 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTD--YQIYAGARKVEQVP-----QY--NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSG 72 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSS--CEEEEEESSGGGSC-----CC--TTEEEEECCTTSCHHHHHTTTTTCSEEEECCC
T ss_pred eEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCccchh-----hc--CCceEEEecccCCHHHHHHHHcCCCEEEECCc
Confidence 588888887775444 4444444 67777754432110 01 233222211 1 345566777888887665
Q ss_pred eeecCCceecccchHHHHHHHhhCCCC
Q 008627 532 SVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 532 aIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
....+-.-+|-.|+..+.-+|+..+++
T Consensus 73 ~~~~~~~~~n~~~~~~l~~a~~~~~~~ 99 (219)
T 3dqp_A 73 SGGKSLLKVDLYGAVKLMQAAEKAEVK 99 (219)
T ss_dssp CTTSSCCCCCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCcEeEeHHHHHHHHHHHHHhCCC
Confidence 444443456888999999888887763
No 42
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2
Probab=63.77 E-value=20 Score=34.44 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=23.3
Q ss_pred cccEEEEcceeeecCCceeccc--c--hHHHHHHHh
Q 008627 522 EVTRVFLGASSVLSNGTVCSRV--G--TACVAMVAY 553 (559)
Q Consensus 522 ~VdkVlLGAdaIlaNGsVvNKv--G--T~~IALaAk 553 (559)
.+|..|+-|...-.+|.+.-.. + +..+|++|+
T Consensus 148 ~~DVAli~a~~aD~~Gn~~~~~~~~~~~~~~a~aA~ 183 (220)
T 1k6d_A 148 RADLALIRAHRCDTLGNLTYQLSARNFNPLIALAAD 183 (220)
T ss_dssp CEEEEEEEEEEEETTCCEECCHHHHTTHHHHHHHEE
T ss_pred CCcEEEEEeecCCCCceEEEecCCccccHHHHHhcC
Confidence 5899999999999999976652 2 223455554
No 43
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=63.52 E-value=28 Score=34.50 Aligned_cols=99 Identities=15% Similarity=0.182 Sum_probs=50.7
Q ss_pred CCEEEEecCcHHHHHHHHHHH------HhCCceEEEEcCCCCCchHHHH-HHHHHhC---CCceEEEe-cchHHHHhccc
Q 008627 455 GDVLLTYGSSSAVEMILQHAH------ELGKQFRVVIVDSRPKHEGKLL-LRRLVRK---GLSCTYTH-INAISYIIHEV 523 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~------e~Gk~FrViVvESRP~~EG~~L-Ak~L~~~---GI~vTyI~-DsAvs~iM~~V 523 (559)
..+++|-|.+..+..+|..+. +.|. +|++++ .+.+.+... +..+.+. |+.+.++. ...+-..+.+-
T Consensus 89 ~~v~~~~g~t~al~~al~~~~~~~~~~~~gd--~vii~~-~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~l~~~i~~~ 165 (416)
T 1qz9_A 89 GEVVVTDTTSINLFKVLSAALRVQATRSPER--RVIVTE-TSNFPTDLYIAEGLADMLQQGYTLRLVDSPEELPQAIDQD 165 (416)
T ss_dssp TSEEECSCHHHHHHHHHHHHHHHHHHHSTTC--CEEEEE-TTSCHHHHHHHHHHHHHHCSSCEEEEESSGGGHHHHCSTT
T ss_pred ccEEEeCChhHHHHHHHHhhcccccccCCCC--cEEEEc-CCCCCchHHHHHHHHHHhcCCceEEEeCcHHHHHHHhCCC
Confidence 467777555555544555443 3343 455553 334433222 2334333 88888886 34444444432
Q ss_pred cEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 524 dkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.++|+=.+.-...|.++. -..|+-+|++||+.|
T Consensus 166 ~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~l 198 (416)
T 1qz9_A 166 TAVVMLTHVNYKTGYMHD---MQALTALSHECGALA 198 (416)
T ss_dssp EEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEE
T ss_pred ceEEEEeccccCcccccC---HHHHHHHHHHcCCEE
Confidence 334333333333465554 356777888888753
No 44
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=62.13 E-value=92 Score=28.18 Aligned_cols=38 Identities=0% Similarity=-0.279 Sum_probs=30.4
Q ss_pred hHHHHHHHHHhCCCceEEEecchHHHHhcc---ccEEEEcc
Q 008627 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHE---VTRVFLGA 530 (559)
Q Consensus 493 EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~---VdkVlLGA 530 (559)
+=.++++.+.+.|+++..|+++.-+.+.+. +|.+|.-.
T Consensus 128 ~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~~~ 168 (199)
T 1x92_A 128 NVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVP 168 (199)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEECS
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEEeC
Confidence 445678888999999999999877777777 99887643
No 45
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=61.68 E-value=14 Score=35.68 Aligned_cols=90 Identities=10% Similarity=0.117 Sum_probs=52.9
Q ss_pred EEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---chHHHHhccccEEEEccee
Q 008627 457 VLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHEVTRVFLGASS 532 (559)
Q Consensus 457 vILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D---sAvs~iM~~VdkVlLGAda 532 (559)
+||..|-++.+- .++..+.++| ++|+++.-.+. +-...+..|...|+.+..... .++..+++.+|.||.-|.
T Consensus 13 ~ilVtGatG~iG~~l~~~L~~~g--~~V~~l~R~~~-~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~- 88 (318)
T 2r6j_A 13 KILIFGGTGYIGNHMVKGSLKLG--HPTYVFTRPNS-SKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALA- 88 (318)
T ss_dssp CEEEETTTSTTHHHHHHHHHHTT--CCEEEEECTTC-SCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC-
T ss_pred eEEEECCCchHHHHHHHHHHHCC--CcEEEEECCCC-chhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCc-
Confidence 688888876653 4444445555 56666654443 222344566677876644332 356667777777765442
Q ss_pred eecCCceecccchHHHHHHHhhCC
Q 008627 533 VLSNGTVCSRVGTACVAMVAYGFH 556 (559)
Q Consensus 533 IlaNGsVvNKvGT~~IALaAk~~~ 556 (559)
..+-.++..+.-+|+..+
T Consensus 89 ------~~~~~~~~~l~~aa~~~g 106 (318)
T 2r6j_A 89 ------FPQILDQFKILEAIKVAG 106 (318)
T ss_dssp ------GGGSTTHHHHHHHHHHHC
T ss_pred ------hhhhHHHHHHHHHHHhcC
Confidence 223456777777777665
No 46
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=61.55 E-value=11 Score=37.78 Aligned_cols=90 Identities=14% Similarity=0.228 Sum_probs=56.7
Q ss_pred HHHHHHHHhc----ccCCCEEEEecCcHHHHHHHHHHHHh--CCceEEEEcCC------CCCchHHHHHHHHHhC-CCce
Q 008627 442 RVIVKHAVTK----IRDGDVLLTYGSSSAVEMILQHAHEL--GKQFRVVIVDS------RPKHEGKLLLRRLVRK-GLSC 508 (559)
Q Consensus 442 e~Ia~~Aa~~----I~dGdvILT~g~SstV~~iL~~A~e~--Gk~FrViVvES------RP~~EG~~LAk~L~~~-GI~v 508 (559)
+.|++.|+++ |.+|++| -+++++|+..+....... -+.++|+-++. .|......|++.|.+. |+++
T Consensus 93 ~~ia~~AA~~l~~~i~~~~~i-gl~~GsT~~~~~~~L~~~~~~~~~~vv~l~ggl~~~~~~~~~~~~i~~~la~~~~~~~ 171 (315)
T 2w48_A 93 SAMGQHGALLVDRLLEPGDII-GFSWGRAVRSLVENLPQRSQSRQVICVPIIGGPSGKLESRYHVNTLTYGAAARLKAES 171 (315)
T ss_dssp HHHHHHHHHHHHHHCCTTCEE-EECCSHHHHHHHTTSCCCSSCCCCEEEESBCBCTTSSCGGGCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHhCCCCCEE-EECChHHHHHHHHhhccccCCCCcEEEEcCCCCCCCCccccCHHHHHHHHHHHHCCce
Confidence 4566666664 8888864 468999988887765331 14567776643 3444455778888875 7777
Q ss_pred EEEec-----ch-H-HHHh------------ccccEEEEccee
Q 008627 509 TYTHI-----NA-I-SYII------------HEVTRVFLGASS 532 (559)
Q Consensus 509 TyI~D-----sA-v-s~iM------------~~VdkVlLGAda 532 (559)
.++.. +. . -.++ ..+|+.|+|.-.
T Consensus 172 ~~l~~P~~~~~~~~~~~l~~~~~~~~~l~~~~~~DiailGIGg 214 (315)
T 2w48_A 172 HLADFPALLDNPLIRNGIMQSQHFKTISSYWDSLDVALVGIGS 214 (315)
T ss_dssp CCCCSBSBCSSHHHHHHHHHSHHHHHHHHHHTTCSEEEECCBC
T ss_pred eEeeCCcccCCHHHHHHHHhChHHHHHHHHHhcCCEEEEccCc
Confidence 55422 11 1 1112 369999999984
No 47
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=61.50 E-value=10 Score=38.02 Aligned_cols=101 Identities=20% Similarity=0.194 Sum_probs=67.7
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceeee
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIl 534 (559)
-|+++.+-....+..++..|.+.|.+.-|++.+.-|..+-.++.+...+.|+ .++-.|.++.+-+...+..+-...+.
T Consensus 72 ~DvaIi~vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi--~viGPNc~Gii~~~~~~~~~~~~~~~ 149 (297)
T 2yv2_A 72 INTSIVFVPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGA--TIIGPNCPGAITPGQAKVGIMPGHIF 149 (297)
T ss_dssp CCEEEECCCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTC--EEECSSSCEEEETTTEEEESCCGGGC
T ss_pred CCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEEcCCCCeeEcccccceeecccCCC
Confidence 4888888888899999999999887766666666665555566676767776 46666676666655433333223334
Q ss_pred cCC--ceecccchHHHHHHH--hhCCC
Q 008627 535 SNG--TVCSRVGTACVAMVA--YGFHI 557 (559)
Q Consensus 535 aNG--sVvNKvGT~~IALaA--k~~~V 557 (559)
.-| +++++.||...+++. ...++
T Consensus 150 ~~G~va~vSqSG~l~~~~~~~~~~~g~ 176 (297)
T 2yv2_A 150 KEGGVAVVSRSGTLTYEISYMLTRQGI 176 (297)
T ss_dssp CEEEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 445 589999999877753 34444
No 48
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=60.92 E-value=32 Score=30.69 Aligned_cols=69 Identities=13% Similarity=0.064 Sum_probs=42.9
Q ss_pred CCEEEEecCcHHHHHHHHHHHHh-CCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecch---HHHH--hccccEEEE
Q 008627 455 GDVLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA---ISYI--IHEVTRVFL 528 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~-Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsA---vs~i--M~~VdkVlL 528 (559)
++.|+.+|+..+=..+...+.+. | ++|+++|..|. -+..|.+.|+.+.+..... +..+ +.++|.||+
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g--~~V~vid~~~~-----~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~ 111 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYG--KISLGIEIREE-----AAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLL 111 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHC--SCEEEEESCHH-----HHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhccC--CeEEEEECCHH-----HHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEE
Confidence 56788889876666666666665 5 46788887652 3455677888765432111 2222 456787776
Q ss_pred cc
Q 008627 529 GA 530 (559)
Q Consensus 529 GA 530 (559)
-.
T Consensus 112 ~~ 113 (183)
T 3c85_A 112 AM 113 (183)
T ss_dssp CC
T ss_pred eC
Confidence 43
No 49
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=60.42 E-value=2.6 Score=42.93 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=47.5
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcc
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGA 530 (559)
.+..|.+|+.+|....-..+++.|++.| ++|+++|..|...+..++ +.-+...|....++-.+.+++|.|..+-
T Consensus 10 ~~~~~k~IlIlG~G~~g~~la~aa~~~G--~~vi~~d~~~~~~~~~~a----d~~~~~~~~d~~~l~~~~~~~dvI~~~~ 83 (389)
T 3q2o_A 10 IILPGKTIGIIGGGQLGRMMALAAKEMG--YKIAVLDPTKNSPCAQVA----DIEIVASYDDLKAIQHLAEISDVVTYEF 83 (389)
T ss_dssp CCCTTSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSTTCTTTTTC----SEEEECCTTCHHHHHHHHHTCSEEEESC
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEeCCCCCchHHhC----CceEecCcCCHHHHHHHHHhCCEeeecc
Confidence 4567889999999988888888888755 688888877654433221 1111111111234556667788877665
Q ss_pred ee
Q 008627 531 SS 532 (559)
Q Consensus 531 da 532 (559)
+.
T Consensus 84 e~ 85 (389)
T 3q2o_A 84 EN 85 (389)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 50
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=60.02 E-value=11 Score=37.58 Aligned_cols=101 Identities=15% Similarity=0.180 Sum_probs=66.8
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceeee
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIl 534 (559)
-|+++.+-....+..++..|.+.|.+.-|++.+.-+..+-.+|.+...+.|+ .++-.|.++.+-+..-+...-...+.
T Consensus 65 ~D~viI~tP~~~~~~~~~ea~~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv--~liGPNc~Gi~~p~~~~~~~~~~~~~ 142 (288)
T 2nu8_A 65 ATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGV--RMIGPNTPGVITPGECKIGIQPGHIH 142 (288)
T ss_dssp CCEEEECCCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTC--EEECSSCCEEEETTTEEEESSCTTSC
T ss_pred CCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEEecCCcceecCCcceeEecccCCC
Confidence 4888888888899999999999888766777777666666677777777776 35656666665554322221112233
Q ss_pred cCC--ceecccchHHHHHH--HhhCCC
Q 008627 535 SNG--TVCSRVGTACVAMV--AYGFHI 557 (559)
Q Consensus 535 aNG--sVvNKvGT~~IALa--Ak~~~V 557 (559)
.-| +++++.||...+++ +...++
T Consensus 143 ~~G~i~~vsqSG~l~~~~~~~~~~~g~ 169 (288)
T 2nu8_A 143 KPGKVGIVSRSGTLTYEAVKQTTDYGF 169 (288)
T ss_dssp CEEEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhcCC
Confidence 345 47888999776665 344444
No 51
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=59.97 E-value=34 Score=30.63 Aligned_cols=91 Identities=14% Similarity=0.167 Sum_probs=59.1
Q ss_pred cCCCEEEEecCc--HHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec----------chHHHHh
Q 008627 453 RDGDVLLTYGSS--SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYII 520 (559)
Q Consensus 453 ~dGdvILT~g~S--stV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D----------sAvs~iM 520 (559)
..| ++++++.. .-+..+.+..++ ..|++|.+++ .++.|.+.||+|+.+.. ..+..+|
T Consensus 24 ~~g-vliSv~d~dK~~l~~~a~~l~~--lGf~i~AT~G--------Ta~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i 92 (143)
T 2yvq_A 24 QKG-ILIGIQQSFRPRFLGVAEQLHN--EGFKLFATEA--------TSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLI 92 (143)
T ss_dssp CSE-EEEECCGGGHHHHHHHHHHHHT--TTCEEEEEHH--------HHHHHHHTTCCCEEECCGGGC-----CBCHHHHH
T ss_pred CCC-EEEEecccchHHHHHHHHHHHH--CCCEEEECch--------HHHHHHHcCCeEEEEEeccCCCcccccccHHHHH
Confidence 457 77776653 223334444433 5789998742 47788899999999963 3355555
Q ss_pred c--cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 521 H--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 521 ~--~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+ ++|.||-=.+ |.--...-.+.|=.+|-.|+||+
T Consensus 93 ~~g~i~lVInt~~-----~~~~~~~d~~~iRR~Av~~~IP~ 128 (143)
T 2yvq_A 93 RDGSIDLVINLPN-----NNTKFVHDNYVIRRTAVDSGIPL 128 (143)
T ss_dssp HTTSCCEEEECCC-----CCGGGHHHHHHHHHHHHHTTCCE
T ss_pred HCCCceEEEECCC-----CCCcCCccHHHHHHHHHHhCCCe
Confidence 5 6999986442 21112345677888899999995
No 52
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=59.63 E-value=22 Score=34.36 Aligned_cols=105 Identities=13% Similarity=0.078 Sum_probs=67.6
Q ss_pred HHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCC------------------chHHHHHHHHHhC-
Q 008627 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK------------------HEGKLLLRRLVRK- 504 (559)
Q Consensus 444 Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~------------------~EG~~LAk~L~~~- 504 (559)
+...+.+.|.+ ..||..|..++-..++..+...|.. +++++|.... ..-..++++|.+.
T Consensus 21 ~g~~~q~~l~~-~~VlVvG~Gg~G~~va~~La~~Gv~-~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 98 (249)
T 1jw9_B 21 FDFDGQEALKD-SRVLIVGLGGLGCAASQYLASAGVG-NLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN 98 (249)
T ss_dssp THHHHHHHHHH-CEEEEECCSHHHHHHHHHHHHHTCS-EEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred cCHHHHHHHhC-CeEEEEeeCHHHHHHHHHHHHcCCC-eEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHC
Confidence 44555555653 6799999988877777777776743 5666665541 2233456777664
Q ss_pred -CCceEEEe----cchHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 505 -GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 505 -GI~vTyI~----DsAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
++.++.+. +..+..++.++|.||...|..- --+.+..+|+.+++|+
T Consensus 99 p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~---------~~~~l~~~~~~~~~p~ 149 (249)
T 1jw9_B 99 PHIAITPVNALLDDAELAALIAEHDLVLDCTDNVA---------VRNQLNAGCFAAKVPL 149 (249)
T ss_dssp TTSEEEEECSCCCHHHHHHHHHTSSEEEECCSSHH---------HHHHHHHHHHHHTCCE
T ss_pred CCcEEEEEeccCCHhHHHHHHhCCCEEEEeCCCHH---------HHHHHHHHHHHcCCCE
Confidence 45666543 2244556789999998876542 2356677788888884
No 53
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=59.38 E-value=1.1e+02 Score=29.91 Aligned_cols=100 Identities=13% Similarity=0.169 Sum_probs=52.4
Q ss_pred CCEEEEecCcHHHHHHHHHHHH--hCCceEEEEcCCCCCchHHHH-HHH-HHhCCCceEEEec--------chHHHHhcc
Q 008627 455 GDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLL-LRR-LVRKGLSCTYTHI--------NAISYIIHE 522 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e--~Gk~FrViVvESRP~~EG~~L-Ak~-L~~~GI~vTyI~D--------sAvs~iM~~ 522 (559)
..+++|.|.+..+..++..+.+ -+..-+|++. .|.+.|... ... +...|+.+.++.. ..+-..+.+
T Consensus 91 ~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~--~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~ 168 (420)
T 1t3i_A 91 REIVYTRNATEAINLVAYSWGMNNLKAGDEIITT--VMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSE 168 (420)
T ss_dssp GGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEE--TTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCT
T ss_pred CeEEEcCChHHHHHHHHHHhhhcccCCCCEEEEC--cchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCC
Confidence 4677787777777666665510 1222356654 355655321 222 2346888877753 223333332
Q ss_pred ccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 523 VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
=.++|+=.+.-...|.++. -..|+-+|++||+++
T Consensus 169 ~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~l 202 (420)
T 1t3i_A 169 KTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKV 202 (420)
T ss_dssp TEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEE
T ss_pred CceEEEEeCCcccccCcCC---HHHHHHHHHHcCCEE
Confidence 1233332332233465555 366777889998753
No 54
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=59.32 E-value=1e+02 Score=27.75 Aligned_cols=37 Identities=3% Similarity=-0.243 Sum_probs=29.1
Q ss_pred hHHHHHHHHHhCCCceEEEecchHHHHhcc---ccEEEEc
Q 008627 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHE---VTRVFLG 529 (559)
Q Consensus 493 EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~---VdkVlLG 529 (559)
+=.++++.+.+.|+++..|+++.-+.+.+. +|.+|.-
T Consensus 124 ~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~~ 163 (196)
T 2yva_A 124 DIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRI 163 (196)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEEe
Confidence 344668888899999999999877777666 8988753
No 55
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=58.94 E-value=38 Score=32.95 Aligned_cols=101 Identities=12% Similarity=0.065 Sum_probs=58.9
Q ss_pred CCCEEEEecCcHHHHHH-HHHHHHhCCceEEEEcCCCCCchHHHHHHHHHh-------CCCceEEEe---cchHHHHhcc
Q 008627 454 DGDVLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-------KGLSCTYTH---INAISYIIHE 522 (559)
Q Consensus 454 dGdvILT~g~SstV~~i-L~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~-------~GI~vTyI~---DsAvs~iM~~ 522 (559)
.+.+||..|-++.|-.. +..+.++| .+|++++-++...- ..+..|.. .++.+.... ...+..++.+
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 100 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLKLN--QVVIGLDNFSTGHQ-YNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKG 100 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCSSCCH-HHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTT
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCCCCch-hhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcC
Confidence 46789999998877544 44455555 67888765544322 22333433 344333222 1345666777
Q ss_pred ccEEEEcceeeecCC--------ceecccchHHHHHHHhhCCC
Q 008627 523 VTRVFLGASSVLSNG--------TVCSRVGTACVAMVAYGFHI 557 (559)
Q Consensus 523 VdkVlLGAdaIlaNG--------sVvNKvGT~~IALaAk~~~V 557 (559)
+|.||--|-....+. .-+|-.||..+.-+|+..++
T Consensus 101 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~ 143 (351)
T 3ruf_A 101 VDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQV 143 (351)
T ss_dssp CSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC
T ss_pred CCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 887776553211000 13567889899988888775
No 56
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=58.06 E-value=1.3e+02 Score=28.95 Aligned_cols=96 Identities=13% Similarity=0.200 Sum_probs=55.1
Q ss_pred CCEEEEecCcHHHHHHHHHHH----HhCCceEEEEcCCCCCchHH-HHHHHHHhCCCceEEEec--------chHHHHhc
Q 008627 455 GDVLLTYGSSSAVEMILQHAH----ELGKQFRVVIVDSRPKHEGK-LLLRRLVRKGLSCTYTHI--------NAISYIIH 521 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~----e~Gk~FrViVvESRP~~EG~-~LAk~L~~~GI~vTyI~D--------sAvs~iM~ 521 (559)
..+++|-|.+..+..++..+. +.| -+|++. .|.+.+. ..+..+...|+.+.++.. ..+-..+.
T Consensus 62 ~~v~~~~g~t~a~~~~~~~~~~~~~~~g--d~vl~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~ 137 (384)
T 1eg5_A 62 SEIFFTSCATESINWILKTVAETFEKRK--RTIITT--PIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVD 137 (384)
T ss_dssp GGEEEESCHHHHHHHHHHHHHHHTTTTC--CEEEEC--TTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCC
T ss_pred CeEEEECCHHHHHHHHHHhhhhhccCCC--CEEEEC--CCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhC
Confidence 467777777777766666654 233 355554 4566665 335556677988887753 12323333
Q ss_pred -cccEEEEcceeeecCCceecccchHHHHHHHhhCC--CC
Q 008627 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFH--IP 558 (559)
Q Consensus 522 -~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~--VP 558 (559)
++..|++ .+.-...|.++.. ..|+-+|++|+ +.
T Consensus 138 ~~~~~v~~-~~~~nptG~~~~~---~~i~~l~~~~~~~~~ 173 (384)
T 1eg5_A 138 EDTFLVSI-MAANNEVGTIQPV---EDVTRIVKKKNKETL 173 (384)
T ss_dssp TTEEEEEE-ESBCTTTCBBCCH---HHHHHHHHHHCTTCE
T ss_pred CCCeEEEE-ECCCCCcccccCH---HHHHHHHHhcCCceE
Confidence 3344444 3333344666662 56777788887 64
No 57
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=57.94 E-value=1.4e+02 Score=28.83 Aligned_cols=96 Identities=18% Similarity=0.235 Sum_probs=52.4
Q ss_pred CCEEEEecCcHHHHHHHHHHH----HhCCceEEEEcCCCCCchHHH-HHHHHHhCCCceEEEec--------chHHHHhc
Q 008627 455 GDVLLTYGSSSAVEMILQHAH----ELGKQFRVVIVDSRPKHEGKL-LLRRLVRKGLSCTYTHI--------NAISYIIH 521 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~----e~Gk~FrViVvESRP~~EG~~-LAk~L~~~GI~vTyI~D--------sAvs~iM~ 521 (559)
..+++|.|.+..+..++..+. +.|. +|++. .|.+.+.. .+..|...|+.+.++.. ..+-..+.
T Consensus 61 ~~v~~~~g~t~a~~~~~~~l~~~~~~~gd--~Vl~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~ 136 (382)
T 4eb5_A 61 GTVVFTSGATEANNLAIIGYAMRNARKGK--HILVS--AVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLR 136 (382)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHGGGCC--EEEEE--TTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCC
T ss_pred CeEEEcCchHHHHHHHHHHHHhhccCCCC--EEEEC--CCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhc
Confidence 356777666666665555544 3443 55554 34455543 34445567999888863 12333333
Q ss_pred cccEEEEcceeeecCCceecccchHHHHHHHhhCCC
Q 008627 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHI 557 (559)
Q Consensus 522 ~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~V 557 (559)
+-.++|+-.+.-...|.++. -..|+-+|++||+
T Consensus 137 ~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~ 169 (382)
T 4eb5_A 137 DDTILVSVQHANNEIGTIQP---VEEISEVLAGKAA 169 (382)
T ss_dssp TTEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSE
T ss_pred CCCeEEEEeccCCCccccCC---HHHHHHHHHHCCC
Confidence 22344443433334466554 2467777888875
No 58
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=57.73 E-value=48 Score=29.55 Aligned_cols=39 Identities=13% Similarity=-0.059 Sum_probs=32.4
Q ss_pred chHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcc
Q 008627 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (559)
Q Consensus 492 ~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGA 530 (559)
.+-.++++.+.+.|+++..|+++.-+.+.+.+|.+|.-.
T Consensus 110 ~~~~~~~~~ak~~g~~vi~IT~~~~s~la~~ad~~l~~~ 148 (183)
T 2xhz_A 110 SEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVK 148 (183)
T ss_dssp HHHHHHHHHHHTTTCCEEEEESCTTSHHHHHSSEEEECC
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCChhHHhCCEEEEeC
Confidence 355567888999999999999988888888899987654
No 59
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=56.77 E-value=45 Score=28.27 Aligned_cols=85 Identities=14% Similarity=0.103 Sum_probs=50.0
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHH-----hccccEEEEc
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI-----IHEVTRVFLG 529 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~i-----M~~VdkVlLG 529 (559)
+..|+..|+...=..+...+.+.| ++|+++|..| +.++.|.+.|+.+.+. |..-... +.++|.||+.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g--~~V~~id~~~-----~~~~~~~~~~~~~~~g-d~~~~~~l~~~~~~~~d~vi~~ 77 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAG--KKVLAVDKSK-----EKIELLEDEGFDAVIA-DPTDESFYRSLDLEGVSAVLIT 77 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESCH-----HHHHHHHHTTCEEEEC-CTTCHHHHHHSCCTTCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CeEEEEECCH-----HHHHHHHHCCCcEEEC-CCCCHHHHHhCCcccCCEEEEe
Confidence 356888888765555566665555 5788888754 2356666778765443 3222222 3467877765
Q ss_pred ceeeecCCceecccchHHHHHHHhhCC
Q 008627 530 ASSVLSNGTVCSRVGTACVAMVAYGFH 556 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~~IALaAk~~~ 556 (559)
.. +......+++.|+..+
T Consensus 78 ~~---------~~~~n~~~~~~a~~~~ 95 (141)
T 3llv_A 78 GS---------DDEFNLKILKALRSVS 95 (141)
T ss_dssp CS---------CHHHHHHHHHHHHHHC
T ss_pred cC---------CHHHHHHHHHHHHHhC
Confidence 44 2233455666777655
No 60
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=56.55 E-value=24 Score=32.49 Aligned_cols=55 Identities=15% Similarity=0.285 Sum_probs=31.2
Q ss_pred EEEEecCcHHHHHHHHHHHHhC-CceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 008627 457 VLLTYGSSSAVEMILQHAHELG-KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~G-k~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~ 512 (559)
+|.||.....+...|....++. ..++|||+|.....+-.++++++.+ ...++|+.
T Consensus 6 iIp~yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~-~~~i~~i~ 61 (255)
T 1qg8_A 6 IMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLN-DNRVRFYQ 61 (255)
T ss_dssp EEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGG-STTEEEEE
T ss_pred EEEcCCCHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhh-cCCEEEEe
Confidence 3555666666666666655432 3567777766555555555555544 44555554
No 61
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=55.65 E-value=25 Score=33.82 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=43.8
Q ss_pred EEEEecCcHHHHHHHHHHHHhC-CceEEEEcC-CCCCchHHHHHHHHHhCCCceEEEec----------chHHHHhc--c
Q 008627 457 VLLTYGSSSAVEMILQHAHELG-KQFRVVIVD-SRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH--E 522 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~G-k~FrViVvE-SRP~~EG~~LAk~L~~~GI~vTyI~D----------sAvs~iM~--~ 522 (559)
.||.-|..+..+.+|.. .+.| ..++|..|= .+|...|.+.|+ ++||+|.++.. ..+-..++ +
T Consensus 11 ~vl~SG~gsnl~all~~-~~~~~l~~~I~~Visn~~~a~~l~~A~---~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~ 86 (209)
T 4ds3_A 11 VIFISGGGSNMEALIRA-AQAPGFPAEIVAVFSDKAEAGGLAKAE---AAGIATQVFKRKDFASKEAHEDAILAALDVLK 86 (209)
T ss_dssp EEEESSCCHHHHHHHHH-HTSTTCSEEEEEEEESCTTCTHHHHHH---HTTCCEEECCGGGSSSHHHHHHHHHHHHHHHC
T ss_pred EEEEECCcHHHHHHHHH-HHcCCCCcEEEEEEECCcccHHHHHHH---HcCCCEEEeCccccCCHHHHHHHHHHHHHhcC
Confidence 45666666666665554 4444 345655443 378777865554 47999998752 34555565 5
Q ss_pred ccEEEEcc
Q 008627 523 VTRVFLGA 530 (559)
Q Consensus 523 VdkVlLGA 530 (559)
+|.+++-+
T Consensus 87 ~Dliv~ag 94 (209)
T 4ds3_A 87 PDIICLAG 94 (209)
T ss_dssp CSEEEESS
T ss_pred CCEEEEec
Confidence 89988765
No 62
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=55.64 E-value=29 Score=33.44 Aligned_cols=92 Identities=8% Similarity=0.107 Sum_probs=52.2
Q ss_pred CEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCC-C---chHHHHHHHHHhCCCceEEEec---chHHHHhccccEEE
Q 008627 456 DVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRP-K---HEGKLLLRRLVRKGLSCTYTHI---NAISYIIHEVTRVF 527 (559)
Q Consensus 456 dvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP-~---~EG~~LAk~L~~~GI~vTyI~D---sAvs~iM~~VdkVl 527 (559)
.+||..|-++.+- .++....+.| ++|+++.-++ . .+-...+..|...|+.+..... .++..+++.+|.||
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi 82 (321)
T 3c1o_A 5 EKIIIYGGTGYIGKFMVRASLSFS--HPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVI 82 (321)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTT--CCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred cEEEEEcCCchhHHHHHHHHHhCC--CcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEE
Confidence 4688888876553 3444444555 5666665443 1 1223334556667765543321 35666777777766
Q ss_pred EcceeeecCCceecccchHHHHHHHhhCC
Q 008627 528 LGASSVLSNGTVCSRVGTACVAMVAYGFH 556 (559)
Q Consensus 528 LGAdaIlaNGsVvNKvGT~~IALaAk~~~ 556 (559)
.-| +...-.++..+.-+|+..+
T Consensus 83 ~~a-------~~~~~~~~~~l~~aa~~~g 104 (321)
T 3c1o_A 83 SAL-------PFPMISSQIHIINAIKAAG 104 (321)
T ss_dssp ECC-------CGGGSGGGHHHHHHHHHHC
T ss_pred ECC-------CccchhhHHHHHHHHHHhC
Confidence 543 2233567777777777665
No 63
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=55.20 E-value=9.3 Score=40.62 Aligned_cols=98 Identities=12% Similarity=0.144 Sum_probs=59.0
Q ss_pred HHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhC---CceEEEEcCC-C----------------CCchHHHHHHHHHhC
Q 008627 445 VKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELG---KQFRVVIVDS-R----------------PKHEGKLLLRRLVRK 504 (559)
Q Consensus 445 a~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~G---k~FrViVvES-R----------------P~~EG~~LAk~L~~~ 504 (559)
++.|+++|+||++|...++.+.-..++....+++ +.++|+-.-+ . +++-|-.+.+...+-
T Consensus 9 aeeAv~~IkdG~tI~~ggf~g~P~~Li~AL~~r~~~~kdLtl~~~~s~g~~~~~~~~l~~~i~~~~~~~~~~lr~~i~~G 88 (436)
T 2oas_A 9 ALEAVSLIRSGETLWTHSMGATPKVLLDALAKHALTLDNITLLQLHTEGAESLSHPSLLGHLRHRCFFGGVPTRPLLQSG 88 (436)
T ss_dssp HHHHHTTCCTTCEEEECCBTTCCHHHHHHHHHHGGGCCSEEEEESSBSSCGGGGSGGGTTTEEEEESSCCTTTHHHHHTT
T ss_pred HHHHHhhCCCCCEEEECCccCcHHHHHHHHHHhhccCCCEEEEEecccCChhhhHHHhcCcEEEeecCCCHHHHHHHHcC
Confidence 3456678999999999888654444444444332 5778876321 1 122222344444444
Q ss_pred CCceEEEecchHHHHhc----cccEEEEcceeeecCCceecc
Q 008627 505 GLSCTYTHINAISYIIH----EVTRVFLGASSVLSNGTVCSR 542 (559)
Q Consensus 505 GI~vTyI~DsAvs~iM~----~VdkVlLGAdaIlaNGsVvNK 542 (559)
++..+-+..+.+...+. .+|..|+.+...-.+|.+.-.
T Consensus 89 ~~~y~P~~ls~~~~~l~~~~l~~DVAlI~as~aD~~Gn~s~~ 130 (436)
T 2oas_A 89 DADYVPIFLSEVPKLFRSGEQKIDTAIIQVSPPDKHGMCSLG 130 (436)
T ss_dssp SSEECCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTCEEECT
T ss_pred CCeeeCCccccHHHHHHcCCCCCCEEEEEeccCCCCceEEEe
Confidence 44333333444444443 489999999999999987643
No 64
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=55.09 E-value=16 Score=35.55 Aligned_cols=104 Identities=9% Similarity=0.083 Sum_probs=61.4
Q ss_pred CCCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhcc--ccE
Q 008627 454 DGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIHE--VTR 525 (559)
Q Consensus 454 dGdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~~--Vdk 525 (559)
.+.+||..|-++.|- .++..+.++|..++|++++..+.......+..+... -.++++. | ..+..++.. +|.
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 101 (346)
T 4egb_A 23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDH-PNYYFVKGEIQNGELLEHVIKERDVQV 101 (346)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTC-TTEEEEECCTTCHHHHHHHHHHHTCCE
T ss_pred CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccC-CCeEEEEcCCCCHHHHHHHHhhcCCCE
Confidence 456899999988774 455556677878999988755422211111112111 1344442 2 456666776 888
Q ss_pred EEEcceeeecCC--------ceecccchHHHHHHHhhCCCC
Q 008627 526 VFLGASSVLSNG--------TVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 526 VlLGAdaIlaNG--------sVvNKvGT~~IALaAk~~~VP 558 (559)
||--|-....+. .-+|-.||..+.-+|+.+++.
T Consensus 102 Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~ 142 (346)
T 4egb_A 102 IVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHI 142 (346)
T ss_dssp EEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTS
T ss_pred EEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 887664332211 135677899999999888764
No 65
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=54.95 E-value=14 Score=39.77 Aligned_cols=96 Identities=16% Similarity=0.186 Sum_probs=60.8
Q ss_pred HHHHHhcccCCCEEEEecCcHHHH---HHHHHHHHhC--CceEEEEcCC-------------------CCCchHHHHHHH
Q 008627 445 VKHAVTKIRDGDVLLTYGSSSAVE---MILQHAHELG--KQFRVVIVDS-------------------RPKHEGKLLLRR 500 (559)
Q Consensus 445 a~~Aa~~I~dGdvILT~g~SstV~---~iL~~A~e~G--k~FrViVvES-------------------RP~~EG~~LAk~ 500 (559)
++.|+++|++|++|.+-+..++-+ ..|.+-.+.| +.++++-.-+ ++++.| ...+.
T Consensus 29 aeEAv~lIkdGdtV~~gG~~g~P~~L~~AL~~r~~~g~~~~ltl~~~~~~G~~~~~~~~~~~~~~~~~~~~f~~-~~~R~ 107 (455)
T 3qli_A 29 PEEAVSSIASGSHLSMGMFAAEPPALLKALADRATRGDIGDLRVYYFETAKIAGDTILRYELNNRIKPYSMFVT-AVERA 107 (455)
T ss_dssp HHHHTTTCCTTCEEEECSGGGSCHHHHHHHHHHHHTTCCCSEEEEESSCCHHHHHTTTCGGGTTTEEEEESSCC-HHHHH
T ss_pred HHHHHHhCCCCCEEEECCcccCHHHHHHHHHHHHhhCCCcceEEEEecccccchhhhhChhhcCcEEEeeCcCC-hhHHH
Confidence 455678999999999987765333 3333222212 4566663211 134445 33566
Q ss_pred HHhCC--------CceEEEecchHHHHhc---cccEEEEcceeeecCCceec
Q 008627 501 LVRKG--------LSCTYTHINAISYIIH---EVTRVFLGASSVLSNGTVCS 541 (559)
Q Consensus 501 L~~~G--------I~vTyI~DsAvs~iM~---~VdkVlLGAdaIlaNGsVvN 541 (559)
+.+.| ++.+-+..+.+..+++ .+|.+|+.+..+-.+|.+.-
T Consensus 108 ~i~~G~~~~~~~~~~y~p~~ls~~p~~~~~~~~iDVAli~vs~~D~~G~~s~ 159 (455)
T 3qli_A 108 LIRRGIEDGGRKVVNYVPSNFHQAPRLLAEEIGIDTFMHTVSPMDCHGYFSL 159 (455)
T ss_dssp HHHHHHHTTTCCCCCCCCCCGGGHHHHHHTTTCCSEEEEEECCCCTTSEEEC
T ss_pred HHhCCCcccCcCcEEEECccHHHHHHHHHhcCCCCEEEEEEecCCCCceEEE
Confidence 66666 3444444678887775 58999999999999998754
No 66
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=54.87 E-value=17 Score=36.75 Aligned_cols=101 Identities=16% Similarity=0.171 Sum_probs=68.6
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhC-CCceEEEecchHHHHhccccEEEEcceee
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK-GLSCTYTHINAISYIIHEVTRVFLGASSV 533 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~-GI~vTyI~DsAvs~iM~~VdkVlLGAdaI 533 (559)
-|+++.+-....+..++.++.+.|.+.-|++.+.-+..+-.++.+.+.+. |+. +|-.+.++.+.+...+...-...+
T Consensus 72 vD~avI~vP~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~--liGPnc~Gii~p~~~~~~~~~~~~ 149 (305)
T 2fp4_A 72 ATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTR--LIGPNCPGVINPGECKIGIMPGHI 149 (305)
T ss_dssp CCEEEECCCHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCE--EECSSSCEEEETTTEEEESSCGGG
T ss_pred CCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhcCCcE--EEeCCCCeEecccccceeeccccC
Confidence 47777777888899999999998877666777766655555677777777 764 677777777776543332112223
Q ss_pred ecCC--ceecccchHHHHHH--HhhCCC
Q 008627 534 LSNG--TVCSRVGTACVAMV--AYGFHI 557 (559)
Q Consensus 534 laNG--sVvNKvGT~~IALa--Ak~~~V 557 (559)
..-| +++++.||...+++ +...++
T Consensus 150 ~~~G~va~vSqSG~l~~~~~~~~~~~g~ 177 (305)
T 2fp4_A 150 HKKGRIGIVSRSGTLTYEAVHQTTQVGL 177 (305)
T ss_dssp CCEEEEEEEESCSHHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEecchHHHHHHHHHHHhcCC
Confidence 3345 58999999988876 444554
No 67
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=54.84 E-value=14 Score=35.50 Aligned_cols=99 Identities=14% Similarity=0.091 Sum_probs=55.3
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc-------hHHHHhcc----
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------AISYIIHE---- 522 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds-------Avs~iM~~---- 522 (559)
...+++|.|.+..+..++..+.+.| -+|++. .|.+.+...+..+...|+++.++... .+-..+.+
T Consensus 66 ~~~v~~~~g~t~a~~~~~~~~~~~g--d~vl~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~ 141 (359)
T 1svv_A 66 DADVHFISGGTQTNLIACSLALRPW--EAVIAT--QLGHISTHETGAIEATGHKVVTAPCPDGKLRVADIESALHENRSE 141 (359)
T ss_dssp TSEEEEESCHHHHHHHHHHHHCCTT--EEEEEE--TTSHHHHSSTTHHHHTTCCEEEECCTTSCCCHHHHHHHHHHSCST
T ss_pred CccEEEeCCchHHHHHHHHHHhCCC--CEEEEc--ccchHHHHHHHHHhcCCCeeEEEeCCCCeecHHHHHHHHHHHHhc
Confidence 3457777777777777777664333 355554 45665554322355678998888643 33333433
Q ss_pred ----ccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 523 ----VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 523 ----VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
+..|++- . ....|.++..-=-..|+-+|++||+.
T Consensus 142 ~~~~~~~v~~~-~-~~ptG~~~~~~~l~~i~~~~~~~~~~ 179 (359)
T 1svv_A 142 HMVIPKLVYIS-N-TTEVGTQYTKQELEDISASCKEHGLY 179 (359)
T ss_dssp TSCEEEEEEEE-S-SCTTSCCCCHHHHHHHHHHHHHHTCE
T ss_pred cCCCceEEEEE-c-CCCCceecCHHHHHHHHHHHHHhCCE
Confidence 3445443 2 23336665541123466678888765
No 68
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=54.79 E-value=8.4 Score=32.70 Aligned_cols=56 Identities=20% Similarity=0.153 Sum_probs=35.3
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCC-CCchHHHHHHHHHhC--CCceEEEec
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR-PKHEGKLLLRRLVRK--GLSCTYTHI 513 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESR-P~~EG~~LAk~L~~~--GI~vTyI~D 513 (559)
.|-.|.++....-+ +.... +...|.++++|-. |...|.++++.|.+. .+++.+++.
T Consensus 26 ~~~~v~~~~~~~~a---~~~l~-~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 84 (151)
T 3kcn_A 26 FDFEVTTCESGPEA---LACIK-KSDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLMLTG 84 (151)
T ss_dssp TTSEEEEESSHHHH---HHHHH-HSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEEEC
T ss_pred cCceEEEeCCHHHH---HHHHH-cCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEEEC
Confidence 35555555544433 33332 2355888888854 788999999999875 455555554
No 69
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=54.64 E-value=7 Score=39.87 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=47.8
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe----cchHHHHhccccEE
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH----INAISYIIHEVTRV 526 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~----DsAvs~iM~~VdkV 526 (559)
.+..+.+||..|....-..+++.|++.| ++|+++|..|...+..++ +-.++. ..++-.+.+++|.|
T Consensus 8 ~~~~~~~IlIlG~G~lg~~la~aa~~lG--~~viv~d~~~~~p~~~~a--------d~~~~~~~~d~~~l~~~~~~~dvi 77 (377)
T 3orq_A 8 KLKFGATIGIIGGGQLGKMMAQSAQKMG--YKVVVLDPSEDCPCRYVA--------HEFIQAKYDDEKALNQLGQKCDVI 77 (377)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCTTCTTGGGS--------SEEEECCTTCHHHHHHHHHHCSEE
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCChhhhhC--------CEEEECCCCCHHHHHHHHHhCCcc
Confidence 3557889999999998888888888765 688888887765443322 112222 13455566678887
Q ss_pred EEcce
Q 008627 527 FLGAS 531 (559)
Q Consensus 527 lLGAd 531 (559)
..+-+
T Consensus 78 ~~~~E 82 (377)
T 3orq_A 78 TYEFE 82 (377)
T ss_dssp EESST
T ss_pred eeccc
Confidence 77654
No 70
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=54.51 E-value=28 Score=33.19 Aligned_cols=93 Identities=12% Similarity=0.126 Sum_probs=53.6
Q ss_pred CCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCC----chHHHHHHHHHhCCCceEEEec---chHHHHhccccEE
Q 008627 455 GDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPK----HEGKLLLRRLVRKGLSCTYTHI---NAISYIIHEVTRV 526 (559)
Q Consensus 455 GdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~----~EG~~LAk~L~~~GI~vTyI~D---sAvs~iM~~VdkV 526 (559)
..+||..|-++.+- .++..+.+.| ++|+++.-++. .+-...+..|...|+.+..... .++..+++.+|.|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~v 81 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLG--HPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVV 81 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT--CCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC--CCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEE
Confidence 35688888876664 4444445555 56776644332 1222334566667765543321 3566667777766
Q ss_pred EEcceeeecCCceecccchHHHHHHHhhCC
Q 008627 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFH 556 (559)
Q Consensus 527 lLGAdaIlaNGsVvNKvGT~~IALaAk~~~ 556 (559)
|.-| +..+-.|+..++-+|+..+
T Consensus 82 i~~a-------~~~~~~~~~~l~~aa~~~g 104 (308)
T 1qyc_A 82 ISTV-------GSLQIESQVNIIKAIKEVG 104 (308)
T ss_dssp EECC-------CGGGSGGGHHHHHHHHHHC
T ss_pred EECC-------cchhhhhHHHHHHHHHhcC
Confidence 6544 3334567777777777766
No 71
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}
Probab=54.11 E-value=46 Score=33.48 Aligned_cols=87 Identities=16% Similarity=0.190 Sum_probs=59.4
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHh-CCCceEEEecchHHHHhccccEEEEcce-
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTHINAISYIIHEVTRVFLGAS- 531 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~-~GI~vTyI~DsAvs~iM~~VdkVlLGAd- 531 (559)
+..+|+.+|.-......+....+....-+|+|.+-. .-.+++.+|.+ .|+++... .+...+.++|.|+.-.-
T Consensus 120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~---~a~~la~~l~~~~g~~~~~~---~~~eav~~aDIVi~aT~s 193 (313)
T 3hdj_A 120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY---ASPEILERIGRRCGVPARMA---APADIAAQADIVVTATRS 193 (313)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT---CCHHHHHHHHHHHTSCEEEC---CHHHHHHHCSEEEECCCC
T ss_pred CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc---HHHHHHHHHHHhcCCeEEEe---CHHHHHhhCCEEEEccCC
Confidence 567899999876666555554443333467777655 55577877764 48887665 45667789999986431
Q ss_pred -------eeecCCceecccchH
Q 008627 532 -------SVLSNGTVCSRVGTA 546 (559)
Q Consensus 532 -------aIlaNGsVvNKvGT~ 546 (559)
..+..|.+++-+|++
T Consensus 194 ~~pvl~~~~l~~G~~V~~vGs~ 215 (313)
T 3hdj_A 194 TTPLFAGQALRAGAFVGAIGSS 215 (313)
T ss_dssp SSCSSCGGGCCTTCEEEECCCS
T ss_pred CCcccCHHHcCCCcEEEECCCC
Confidence 235678999999986
No 72
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis}
Probab=54.01 E-value=36 Score=33.20 Aligned_cols=32 Identities=16% Similarity=0.051 Sum_probs=23.8
Q ss_pred cccEEEEcceeeecCCceecc-c-c--hHHHHHHHh
Q 008627 522 EVTRVFLGASSVLSNGTVCSR-V-G--TACVAMVAY 553 (559)
Q Consensus 522 ~VdkVlLGAdaIlaNGsVvNK-v-G--T~~IALaAk 553 (559)
.+|..|+-|...-.+|.+.-. . + ...+|++|+
T Consensus 151 ~~DVAlI~a~~aD~~Gn~~~~~~~~~~~~~~a~aAk 186 (241)
T 3cdk_A 151 TGDVAIVKAWKADTMGNLIFRKTARNFNPIAAMAGK 186 (241)
T ss_dssp CEEEEEEEEEEEETTCCEECCGGGCTTHHHHHHHEE
T ss_pred CCcEEEEEeccCCCCCeEEEecCchhhHHHHHHhCC
Confidence 589999999999999997665 2 2 344555555
No 73
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=53.94 E-value=50 Score=31.90 Aligned_cols=105 Identities=13% Similarity=0.123 Sum_probs=67.6
Q ss_pred HHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCC---------CC---------chHHHHHHHHHhC-
Q 008627 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR---------PK---------HEGKLLLRRLVRK- 504 (559)
Q Consensus 444 Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESR---------P~---------~EG~~LAk~L~~~- 504 (559)
+...+.+.|.+ ..||..|..++-..++......|.. ++.++|.. -. .....++++|.+.
T Consensus 18 ~g~~~q~~l~~-~~VlvvG~GglG~~va~~La~~Gvg-~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 95 (251)
T 1zud_1 18 IALDGQQKLLD-SQVLIIGLGGLGTPAALYLAGAGVG-TLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLN 95 (251)
T ss_dssp THHHHHHHHHT-CEEEEECCSTTHHHHHHHHHHTTCS-EEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred cCHHHHHHHhc-CcEEEEccCHHHHHHHHHHHHcCCC-eEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHC
Confidence 45666667764 6899999887777777777776754 45555432 21 2234557777764
Q ss_pred -CCceEEEe----cchHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 505 -GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 505 -GI~vTyI~----DsAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+++++.+. +..+..++.++|.||...|..- --+.+.-.|..+++|+
T Consensus 96 p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~---------~r~~l~~~~~~~~~p~ 146 (251)
T 1zud_1 96 PDIQLTALQQRLTGEALKDAVARADVVLDCTDNMA---------TRQEINAACVALNTPL 146 (251)
T ss_dssp TTSEEEEECSCCCHHHHHHHHHHCSEEEECCSSHH---------HHHHHHHHHHHTTCCE
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHH---------HHHHHHHHHHHhCCCE
Confidence 56666654 2345667888999988776432 2356667778888885
No 74
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=53.91 E-value=1.6e+02 Score=29.22 Aligned_cols=56 Identities=14% Similarity=-0.064 Sum_probs=38.9
Q ss_pred chHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEc---ceeeecCCceecccchHHHH
Q 008627 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG---ASSVLSNGTVCSRVGTACVA 549 (559)
Q Consensus 492 ~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLG---AdaIlaNGsVvNKvGT~~IA 549 (559)
.+=..+++.+.+.|+.+..|+++.-+.+-+.+|.+|.- .+.+ .|....+.||.+..
T Consensus 154 ~~vi~al~~Ak~~Ga~~IaIT~~~~S~La~~AD~~I~~~~g~E~~--~~st~~~s~ta~~~ 212 (306)
T 1nri_A 154 PYVIAGLQYAKSLGALTISIASNPKSEMAEIADIAIETIVGPEIL--TGSSRLKSGTAQKM 212 (306)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESSTTCHHHHHSSEEEECCCCSCSS--TTCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCChHHHhCCEEEEcCCCCccc--cCcccchhHHHHHH
Confidence 34556688888899999999998888888889988853 2322 23334566665543
No 75
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}
Probab=53.32 E-value=31 Score=37.40 Aligned_cols=96 Identities=16% Similarity=0.195 Sum_probs=55.4
Q ss_pred HHHHhcccCCCEEEEecCc------HHHHHHHHHHHH---hCC--ceEEEEcC-CCC-----------------CchHHH
Q 008627 446 KHAVTKIRDGDVLLTYGSS------SAVEMILQHAHE---LGK--QFRVVIVD-SRP-----------------KHEGKL 496 (559)
Q Consensus 446 ~~Aa~~I~dGdvILT~g~S------stV~~iL~~A~e---~Gk--~FrViVvE-SRP-----------------~~EG~~ 496 (559)
+.|+.+|+||++|...++. .++..+.+.+.+ .|. .++++..- ..| ++.|..
T Consensus 9 eEAv~~IkdGdtV~~gGf~~~G~P~~Li~AL~~r~~~~~~~g~~~~Ltl~~~~s~g~~~~~~l~~~g~v~~~~~~~~~~~ 88 (506)
T 2nvv_A 9 EEAAEFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGMFTGASTGARLDGVLAQADAVKFRTPYQSNKD 88 (506)
T ss_dssp HHHHTTCCTTCEEEECCSSSTTCCCSHHHHHHHHHHHHHTTTCCCCEEEECSSCCCTTTHHHHHHTTCEEEEESCCCCHH
T ss_pred HHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHhHHhhccccCCceEEEEEecCCCcchhHHhccCCceEEEeeeCCCHH
Confidence 4556789999999998764 345555555543 333 35555421 122 222333
Q ss_pred HHHHHHhCC-CceEEEecchHHHHhc-----cccEEEEcceeeecCCceecc
Q 008627 497 LLRRLVRKG-LSCTYTHINAISYIIH-----EVTRVFLGASSVLSNGTVCSR 542 (559)
Q Consensus 497 LAk~L~~~G-I~vTyI~DsAvs~iM~-----~VdkVlLGAdaIlaNGsVvNK 542 (559)
+. ++...| ++.+-+..+.+...+. .+|..|+-|...-.+|.+.-.
T Consensus 89 ~r-~~i~~G~i~~~P~~ls~v~~~l~~~~l~~~DVAlI~as~aDe~Gnls~~ 139 (506)
T 2nvv_A 89 LR-NLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKILPT 139 (506)
T ss_dssp HH-HHHHTTSSEECCCCGGGHHHHHHTTSSCCCCEEEEEESEECTTSEEECC
T ss_pred HH-HHHHcCCCeEeCCCcccHHHHHHcCCcCCCCEEEEEecccCCCceEEEe
Confidence 33 333344 3322223444444443 589999999999999987653
No 76
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=53.16 E-value=1.7e+02 Score=28.40 Aligned_cols=100 Identities=14% Similarity=0.184 Sum_probs=52.9
Q ss_pred CCEEEEecCcHHHHHHHHHHHH--hCCceEEEEcCCCCCchHHH-HHHHH-HhCCCceEEEec--------chHHHHhcc
Q 008627 455 GDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKL-LLRRL-VRKGLSCTYTHI--------NAISYIIHE 522 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e--~Gk~FrViVvESRP~~EG~~-LAk~L-~~~GI~vTyI~D--------sAvs~iM~~ 522 (559)
..+++|-|.+..+..++..+.+ .+..-+|++.+ |.+.|.. ....+ ...|+.+.++.. ..+-..+.+
T Consensus 86 ~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~ 163 (406)
T 1kmj_A 86 EELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQ--MEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDE 163 (406)
T ss_dssp GGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEET--TCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCT
T ss_pred CeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEec--ccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhcc
Confidence 4677787777777666665521 12334566653 4554432 22222 335888887753 233333432
Q ss_pred ccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 523 VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
-.++|+=...--..|.++. -..|+-+|++|++++
T Consensus 164 ~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~l 197 (406)
T 1kmj_A 164 KTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKV 197 (406)
T ss_dssp TEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEE
T ss_pred CCeEEEEeCCCccccCcCC---HHHHHHHHHHcCCEE
Confidence 2233332222233466665 456777888888753
No 77
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=52.58 E-value=1.3e+02 Score=30.73 Aligned_cols=131 Identities=12% Similarity=0.189 Sum_probs=70.6
Q ss_pred hhhHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CCEEEEecCc--HHH-H
Q 008627 395 SVSMGNAIRFLKSQIAKIP-ISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRD--GDVLLTYGSS--SAV-E 468 (559)
Q Consensus 395 svsmgNAIrrlk~~I~~l~-~~~s~~eaK~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~d--GdvILT~g~S--stV-~ 468 (559)
+++++.+...+-+.+.... .+.+.+.+.+.+++.|+. +.+.|.+.+.+.... +..+|.|+.. ++| +
T Consensus 4 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~q~qir~--------S~~~iLrea~~~f~~~~~~ialSfSGGKDStVLL 75 (308)
T 3fwk_A 4 VMRLGDAAELCYNLTSSYLQIAAESDSIIAQTQRAINT--------TKSILINETFPKWSPLNGEISFSYNGGKDCQVLL 75 (308)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCCTTSHHHHHHHHHHH--------HHHHHHHHTTTTSCSSSSSEEEECCSSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcccCChHHHHHHHHHHHHH--------HHHHHHHHHHHHcccccCCEEEEecCChhHHHHH
Confidence 3456666666655554321 112222233444444432 333355666666654 5677766543 444 5
Q ss_pred HHHHHHHHh-------------------CCceEEEEcCCCCC-chHHHHHHHHHh-CCCceEEEec-------chHHHHh
Q 008627 469 MILQHAHEL-------------------GKQFRVVIVDSRPK-HEGKLLLRRLVR-KGLSCTYTHI-------NAISYII 520 (559)
Q Consensus 469 ~iL~~A~e~-------------------Gk~FrViVvESRP~-~EG~~LAk~L~~-~GI~vTyI~D-------sAvs~iM 520 (559)
.++..+... ...|.|+-+|+.=. -|=.++..++.+ .|+++..+.- .+...++
T Consensus 76 hL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~FpET~ef~d~~~~~ygL~L~v~~p~~~~~~~~~cc~~~ 155 (308)
T 3fwk_A 76 LLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKTLENFIEETSLRYSLSLYESDRDKCETMAEAFETFL 155 (308)
T ss_dssp HHHHHHHHHHHTCCE-----------------EEEECCCTTCCHHHHHHHHHHHHHTTEEEEECCTTSCCCHHHHHHHHH
T ss_pred HHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCCHHHHHHHHHHHHHhCCcEEEeCCCCCHHHHHHHHHHH
Confidence 666565311 14789999997544 477778888765 5887766532 1334444
Q ss_pred c---cccEEEEcceee
Q 008627 521 H---EVTRVFLGASSV 533 (559)
Q Consensus 521 ~---~VdkVlLGAdaI 533 (559)
+ .++.+|.|.-+-
T Consensus 156 K~~P~~~AwitG~RR~ 171 (308)
T 3fwk_A 156 QVFPETKAIVIGIRHT 171 (308)
T ss_dssp HHCTTCCEEECCCCTT
T ss_pred HhCCCCCEEEEEeecC
Confidence 3 478888887554
No 78
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=52.37 E-value=55 Score=28.23 Aligned_cols=55 Identities=13% Similarity=0.243 Sum_probs=38.8
Q ss_pred EEEecCc-HHHHHHHHHHHHhCCceEEEEcCCCCC-chHHHHHHHHHhCCCceEEEe
Q 008627 458 LLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPK-HEGKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 458 ILT~g~S-stV~~iL~~A~e~Gk~FrViVvESRP~-~EG~~LAk~L~~~GI~vTyI~ 512 (559)
|.+|-.+ ..+...|..|.+.|.+.+|++-...-. .......+.|.+.|+++.+..
T Consensus 32 i~~~~~~~~~i~~aL~~a~~rGV~Vril~~~~~~~~~~~~~~~~~L~~~gv~v~~~~ 88 (155)
T 1byr_A 32 MMAYSFTAPDIMKALVAAKKRGVDVKIVIDERGNTGRASIAAMNYIANSGIPLRTDS 88 (155)
T ss_dssp EEESSBCCHHHHHHHHHHHHTTCEEEEEEESTTCCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEeCCHHHHHHHHHHHHCCCEEEEEEeCccccccccHHHHHHHHHCCCeEEEcC
Confidence 4444433 467778888888899888887654322 244567888999999988763
No 79
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2
Probab=51.65 E-value=41 Score=36.35 Aligned_cols=95 Identities=13% Similarity=0.160 Sum_probs=54.4
Q ss_pred HHHHhcccCCCEEEEecCc------HHHHHHHHHHHHhCCceEEEEc-CCCCCc-----------------hHHHHHHHH
Q 008627 446 KHAVTKIRDGDVLLTYGSS------SAVEMILQHAHELGKQFRVVIV-DSRPKH-----------------EGKLLLRRL 501 (559)
Q Consensus 446 ~~Aa~~I~dGdvILT~g~S------stV~~iL~~A~e~Gk~FrViVv-ESRP~~-----------------EG~~LAk~L 501 (559)
+.|+.+|+||++|.+.++. .++..+.+.+.+.+.+++++.. ...|.. .|..+ +++
T Consensus 19 eEAv~~IkdGdtV~~gGf~~~G~P~~Li~AL~~r~~~~dl~Ltl~~~~~~g~~~~~~l~~~g~v~~~~~~~~~~~~-r~~ 97 (497)
T 2g39_A 19 AEAADLIQDGMTVGMSGFTRAGEAKAVPQALAMRAKERPLRISLMTGASLGNDLDKQLTEAGVLARRMPFQVDSTL-RKA 97 (497)
T ss_dssp HHHHTTCCTTCEEEECCBTTBSCCCHHHHHHHHHHHHSCCCEEEECSSCCCTTHHHHHHHTTCEEEEESCCCCHHH-HHH
T ss_pred HHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHhhhcCCceEEEEecccccccchHHHhcCCceEEEEeeCCCHHH-HHH
Confidence 3455789999999998764 3444444444322222444431 223332 22222 333
Q ss_pred HhCCCceEEEe--cchHHHHhc-----cccEEEEcceeeecCCceecc
Q 008627 502 VRKGLSCTYTH--INAISYIIH-----EVTRVFLGASSVLSNGTVCSR 542 (559)
Q Consensus 502 ~~~GI~vTyI~--DsAvs~iM~-----~VdkVlLGAdaIlaNGsVvNK 542 (559)
...|- ++|++ .+.+...+. .+|..|+-|...-.+|.+.-.
T Consensus 98 i~~G~-v~fvP~~ls~~~~~l~~~~l~~~DVAlI~as~aDe~Gnls~~ 144 (497)
T 2g39_A 98 INAGE-VMFIDQHLSETVEQLRNHQLKLPDIAVIEAAAITEQGHIVPT 144 (497)
T ss_dssp HHTTS-SEECCCCTTTHHHHHHTTSSCCCSEEEEEESEECTTSCEECC
T ss_pred HHcCC-CeEECCccccHHHHHHcCCcCCCCEEEEEecccCCCceEEEe
Confidence 44453 45554 233443332 589999999999999987653
No 80
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=51.21 E-value=46 Score=36.09 Aligned_cols=96 Identities=13% Similarity=0.167 Sum_probs=58.6
Q ss_pred HHHHhc--ccCCCEEEEecCcH----HHHHHHHHHHHhC-CceEEEEcCCCC-------------------CchHHHHHH
Q 008627 446 KHAVTK--IRDGDVLLTYGSSS----AVEMILQHAHELG-KQFRVVIVDSRP-------------------KHEGKLLLR 499 (559)
Q Consensus 446 ~~Aa~~--I~dGdvILT~g~Ss----tV~~iL~~A~e~G-k~FrViVvESRP-------------------~~EG~~LAk 499 (559)
+.|+++ |+||++|...+..+ ++..++.++.+++ +.++++-....+ ++-|-.+.+
T Consensus 50 eEAv~~~~IkdG~tV~~gg~~G~P~~Li~AL~~r~~~~g~kdLtli~~s~g~~~~~l~~~i~~g~v~r~~~~~~g~~~r~ 129 (509)
T 1xr4_A 50 EEAIRRSGLKNGMTISFHHAFRGGDKVVNMVMAKLAEMGFRDLTLASSSLIDAHWPLIEHIKNGVVRQIYTSGLRGKLGE 129 (509)
T ss_dssp HHHHHHTTCCTTCEEEECCTTGGGCCHHHHHHHHHHHTTCCSEEEEESCCCGGGTTHHHHHHTTSEEEEEESBCCHHHHH
T ss_pred HHHhcCCCCCCcCEEEECCccCCHHHHHHHHHHHHHhcCCcceEEEecCCcCcchhHHHHhhcCceEEEEEccCCHHHHH
Confidence 345557 89999999887653 4444455555444 457776532221 111222222
Q ss_pred HHHh--CCCceEEEecchHHHHhc----cccEEEEcceeeecCCceec
Q 008627 500 RLVR--KGLSCTYTHINAISYIIH----EVTRVFLGASSVLSNGTVCS 541 (559)
Q Consensus 500 ~L~~--~GI~vTyI~DsAvs~iM~----~VdkVlLGAdaIlaNGsVvN 541 (559)
...+ ..+++.|..-..+.++|. .+|..|+.|...-.+|.+.-
T Consensus 130 ~i~~G~~~~P~~~s~~~g~p~ll~~~~l~iDVAlI~as~aD~~Gnls~ 177 (509)
T 1xr4_A 130 EISAGLMENPVQIHSHGGRVKLIQSGELNIDVAFLGVPCCDEFGNANG 177 (509)
T ss_dssp HHHHTCCSSCEEECCHHHHHHHHHTTSSCCSEEEEEESEEETTCCEES
T ss_pred HHHcCCCcCCeeEeccCCHHHHHhcCCCCceEEEEEeccCCCCceEEE
Confidence 2222 246676664334677775 59999999999999999874
No 81
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=51.00 E-value=22 Score=33.18 Aligned_cols=55 Identities=16% Similarity=0.132 Sum_probs=36.8
Q ss_pred EEEecCc-HHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec
Q 008627 458 LLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI 513 (559)
Q Consensus 458 ILT~g~S-stV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D 513 (559)
|.+|..+ .-+...|..|++.|.+.+|++....-... ......|.+.||+|.+...
T Consensus 64 i~~y~~~~~~i~~aL~~aa~rGV~Vrii~D~~~~~~~-~~~~~~l~~~gi~v~~~~~ 119 (196)
T 4ggj_A 64 LCLFAFSSPQLGRAVQLLHQRGVRVRVITDCDYMALN-GSQIGLLRKAGIQVRHDQD 119 (196)
T ss_dssp EEESCBCCHHHHHHHHHHHHTTCEEEEEESSCCC----CCHHHHHHHTTCEEEECCS
T ss_pred EEEEEeCCHHHHHHHHHHHHcCCcEEEEEeccccccc-HHHHHHHHhcCCCcccccc
Confidence 5566544 55678888999999999998754322222 2346779999999876544
No 82
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=50.63 E-value=11 Score=37.82 Aligned_cols=63 Identities=24% Similarity=0.362 Sum_probs=47.1
Q ss_pred cCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEccee
Q 008627 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (559)
Q Consensus 453 ~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAda 532 (559)
..|+.|..+|+-..+.+.+. +.++|+|+|-.|. + |. +++.+.-++++++|.||+=+.+
T Consensus 139 ~~g~kV~vIG~~P~i~~~l~------~~~~v~V~d~~p~-~-----------g~----~p~~~~e~ll~~aD~viiTGsT 196 (270)
T 2h1q_A 139 VKGKKVGVVGHFPHLESLLE------PICDLSILEWSPE-E-----------GD----YPLPASEFILPECDYVYITCAS 196 (270)
T ss_dssp TTTSEEEEESCCTTHHHHHT------TTSEEEEEESSCC-T-----------TC----EEGGGHHHHGGGCSEEEEETHH
T ss_pred cCCCEEEEECCCHHHHHHHh------CCCCEEEEECCCC-C-----------CC----CChHHHHHHhhcCCEEEEEeee
Confidence 35789999999876655442 3479999998887 2 32 3788888999999999987766
Q ss_pred eecCCc
Q 008627 533 VLSNGT 538 (559)
Q Consensus 533 IlaNGs 538 (559)
+. ||+
T Consensus 197 lv-N~T 201 (270)
T 2h1q_A 197 VV-DKT 201 (270)
T ss_dssp HH-HTC
T ss_pred ee-cCC
Confidence 65 444
No 83
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=50.34 E-value=93 Score=30.56 Aligned_cols=98 Identities=16% Similarity=0.249 Sum_probs=50.6
Q ss_pred CCEEEEecCcHHHHHHHHHH---HHhCCceEEEEcCCCCCchHHH-HHHHHHh-CCCceEEEecc---------hHHHHh
Q 008627 455 GDVLLTYGSSSAVEMILQHA---HELGKQFRVVIVDSRPKHEGKL-LLRRLVR-KGLSCTYTHIN---------AISYII 520 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A---~e~Gk~FrViVvESRP~~EG~~-LAk~L~~-~GI~vTyI~Ds---------Avs~iM 520 (559)
..+++|-|.+..+..++... ...| -+|++.+ |.+.+.. ....|.+ .|+.+.++... .+-..+
T Consensus 87 ~~v~~~~g~t~al~~~~~~l~~~~~~g--d~vi~~~--~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l 162 (406)
T 3cai_A 87 GGVVLGADRAVLLSLLAEASSSRAGLG--YEVIVSR--LDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLI 162 (406)
T ss_dssp GGEEEESCHHHHHHHHHHHTGGGGBTT--CEEEEET--TSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHC
T ss_pred CeEEEeCChHHHHHHHHHHHhhccCCC--CEEEEcC--CccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHh
Confidence 46777766665555444332 2223 3566643 5555432 2334433 58888887532 333333
Q ss_pred ccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 521 HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 521 ~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.+-+++|+-...-...|.++. -..|+-+|+.+|+.|
T Consensus 163 ~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~l 198 (406)
T 3cai_A 163 SKSTRLVAVNSASGTLGGVTD---LRAMTKLVHDVGALV 198 (406)
T ss_dssp CTTEEEEEEESBCTTTCBBCC---CHHHHHHHHHTTCEE
T ss_pred CCCceEEEEeCCcCCccccCC---HHHHHHHHHHcCCEE
Confidence 322233333333334465554 256777888888753
No 84
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=50.21 E-value=53 Score=30.90 Aligned_cols=37 Identities=19% Similarity=-0.029 Sum_probs=31.0
Q ss_pred hHHHHHHHHHh--CCCceEEEecchHHHHhccccEEEEc
Q 008627 493 EGKLLLRRLVR--KGLSCTYTHINAISYIIHEVTRVFLG 529 (559)
Q Consensus 493 EG~~LAk~L~~--~GI~vTyI~DsAvs~iM~~VdkVlLG 529 (559)
+-.++++.+.+ .|+++..|+++.-+.+-+.+|.+|.-
T Consensus 121 ~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~aD~~l~~ 159 (220)
T 3etn_A 121 EIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLST 159 (220)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEEC
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCChhHHhCCEEEEc
Confidence 44566888889 99999999998888888889998874
No 85
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=49.77 E-value=1.9e+02 Score=28.11 Aligned_cols=99 Identities=13% Similarity=0.168 Sum_probs=53.2
Q ss_pred CCEEEEecCcHHHHHHHHHHH----HhCCceEEEEcCCCCCchHHH-HHHHHHhCCCceEEEecc--------hHHHHhc
Q 008627 455 GDVLLTYGSSSAVEMILQHAH----ELGKQFRVVIVDSRPKHEGKL-LLRRLVRKGLSCTYTHIN--------AISYIIH 521 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~----e~Gk~FrViVvESRP~~EG~~-LAk~L~~~GI~vTyI~Ds--------Avs~iM~ 521 (559)
..+++|-|.+..+..++..+. +.|.. +|++.+ +.+-+.. .+..+...|+.+.++... ++-..+.
T Consensus 81 ~~v~~~~g~t~al~~~~~~l~~~~~~~gd~-~Vl~~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~ 157 (400)
T 3vax_A 81 DELIFTSGATESNNIALLGLAPYGERTGRR-HIITSA--IEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLR 157 (400)
T ss_dssp GGEEEESCHHHHHHHHHHTTHHHHHHHTCC-EEEEET--TSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCC
T ss_pred CcEEEeCCHHHHHHHHHHHHHHhhccCCCC-EEEECc--cccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcC
Confidence 357777776666666665543 44431 566553 3333332 244455679999888643 2222233
Q ss_pred cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 522 ~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+-.++++=...--..|.++. -..|+-+|++||+.|
T Consensus 158 ~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~l 192 (400)
T 3vax_A 158 PDTLLVSLMHVNNETGVIQP---VAELAQQLRATPTYL 192 (400)
T ss_dssp TTEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSCEE
T ss_pred CCceEEEEECCCCCceeeCc---HHHHHHHHHhcCCEE
Confidence 22344433333333455544 256777889988754
No 86
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=49.61 E-value=76 Score=30.73 Aligned_cols=95 Identities=16% Similarity=0.134 Sum_probs=53.7
Q ss_pred EEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------chHHHHh---ccccE
Q 008627 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYII---HEVTR 525 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D--------sAvs~iM---~~Vdk 525 (559)
+++|.|.+..+..++..+.+.| -+|++. .|.+.|..+...+...|+.+.++.. ..+-..+ +++..
T Consensus 74 v~~~~g~t~a~~~~~~~l~~~g--d~vl~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~ 149 (386)
T 2dr1_A 74 LLVPSSGTGIMEASIRNGVSKG--GKVLVT--IIGAFGKRYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEA 149 (386)
T ss_dssp EEESSCHHHHHHHHHHHHSCTT--CEEEEE--ESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHCTTCCE
T ss_pred EEEeCChHHHHHHHHHHhhcCC--CeEEEE--cCCchhHHHHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcCCCCcE
Confidence 5566666666666665544333 356555 4567664445555567888777653 2333344 24555
Q ss_pred EEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 526 VlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
|++- ..-...|.+.. -..|+-+|++||+++
T Consensus 150 v~~~-~~~nptG~~~~---l~~i~~l~~~~~~~l 179 (386)
T 2dr1_A 150 VTIT-YNETSTGVLNP---LPELAKVAKEHDKLV 179 (386)
T ss_dssp EEEE-SEETTTTEECC---HHHHHHHHHHTTCEE
T ss_pred EEEE-eecCCcchhCC---HHHHHHHHHHcCCeE
Confidence 5553 33334455543 366777888888753
No 87
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=48.88 E-value=48 Score=32.22 Aligned_cols=99 Identities=10% Similarity=0.087 Sum_probs=54.4
Q ss_pred cCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-----------chHHHHhc
Q 008627 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-----------NAISYIIH 521 (559)
Q Consensus 453 ~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D-----------sAvs~iM~ 521 (559)
....+++|-|.+..+..++..+.+.| -+|++.+ |.+.+... .+...|+++.++.. ..+-..+.
T Consensus 81 ~~~~v~~~~g~~~a~~~~~~~l~~~g--d~vl~~~--~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~ 154 (383)
T 3kax_A 81 QKEWIVFSAGIVPALSTSIQAFTKEN--ESVLVQP--PIYPPFFE--MVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQFQ 154 (383)
T ss_dssp CGGGEEEESCHHHHHHHHHHHHCCTT--CEEEECS--SCCHHHHH--HHHHTTCEEEECCCEEETTEEECCHHHHHHHHT
T ss_pred ChhhEEEcCCHHHHHHHHHHHhCCCC--CEEEEcC--CCcHHHHH--HHHHcCCEEEeccceecCCcEEEcHHHHHHHhC
Confidence 34467777777777766666554333 3555543 66666543 34456777666542 23333333
Q ss_pred -cccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 522 -~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
++..|++ .+.--..|.++..---..|+-+|++|++.
T Consensus 155 ~~~~~v~i-~~p~nptG~~~~~~~l~~l~~~~~~~~~~ 191 (383)
T 3kax_A 155 QGVKLMLL-CSPHNPIGRVWKKEELTKLGSLCTKYNVI 191 (383)
T ss_dssp TTCCEEEE-ESSBTTTTBCCCHHHHHHHHHHHHHHTCE
T ss_pred cCCeEEEE-eCCCCCCCcCcCHHHHHHHHHHHHHCCCE
Confidence 4666666 33333345555444344455568888875
No 88
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=48.82 E-value=45 Score=32.15 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=43.6
Q ss_pred EEEecCcHHHHHHHHHHHHhCCceEEEEcCC-CCCchHHHHHHHHHhCCCceEEEe----------cchHHHHhc--ccc
Q 008627 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDS-RPKHEGKLLLRRLVRKGLSCTYTH----------INAISYIIH--EVT 524 (559)
Q Consensus 458 ILT~g~SstV~~iL~~A~e~Gk~FrViVvES-RP~~EG~~LAk~L~~~GI~vTyI~----------DsAvs~iM~--~Vd 524 (559)
||.-|+.+..+.+|... +.|..++|..+=| +|...|.+.|+ ++||+|.++. |..+-..++ ++|
T Consensus 10 vl~SG~Gsnl~all~~~-~~~~~~eI~~Vis~~~~a~~~~~A~---~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~D 85 (215)
T 3tqr_A 10 VLISGNGTNLQAIIGAI-QKGLAIEIRAVISNRADAYGLKRAQ---QADIPTHIIPHEEFPSRTDFESTLQKTIDHYDPK 85 (215)
T ss_dssp EEESSCCHHHHHHHHHH-HTTCSEEEEEEEESCTTCHHHHHHH---HTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCcHHHHHHHHHH-HcCCCCEEEEEEeCCcchHHHHHHH---HcCCCEEEeCccccCchhHhHHHHHHHHHhcCCC
Confidence 44446667766666554 4445566654443 77777765555 4799998874 344555565 589
Q ss_pred EEEEcc
Q 008627 525 RVFLGA 530 (559)
Q Consensus 525 kVlLGA 530 (559)
.+++-+
T Consensus 86 liv~ag 91 (215)
T 3tqr_A 86 LIVLAG 91 (215)
T ss_dssp EEEESS
T ss_pred EEEEcc
Confidence 988855
No 89
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=48.65 E-value=58 Score=31.82 Aligned_cols=94 Identities=17% Similarity=0.126 Sum_probs=47.1
Q ss_pred EEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------chHHHHhc--cccEE
Q 008627 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EVTRV 526 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D--------sAvs~iM~--~VdkV 526 (559)
+++|.|-+..+..++..+.+.| -+|++.+ |.+.+..+...+...|+.+.++.. ..+-..+. ++..|
T Consensus 73 i~~~~g~t~a~~~~~~~~~~~g--d~vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v 148 (393)
T 2huf_A 73 FCLSASGHGGMEATLCNLLEDG--DVILIGH--TGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVL 148 (393)
T ss_dssp EEESSCHHHHHHHHHHHHCCTT--CEEEEEE--SSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEE
T ss_pred EEEcCcHHHHHHHHHHHHhCCC--CEEEEEC--CCcchHHHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcEE
Confidence 5556565656555555543333 2555553 344443333334456777777652 12223332 35555
Q ss_pred EEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 527 lLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
++ .+.--..|.++. -..|+-+|++||+.
T Consensus 149 ~~-~~~~nptG~~~~---l~~i~~~~~~~~~~ 176 (393)
T 2huf_A 149 FL-TQGDSSTGVLQG---LEGVGALCHQHNCL 176 (393)
T ss_dssp EE-ESEETTTTEECC---CTTHHHHHHHTTCE
T ss_pred EE-EccCCCccccCC---HHHHHHHHHHcCCE
Confidence 54 232233455444 23566677777765
No 90
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=48.58 E-value=46 Score=29.25 Aligned_cols=78 Identities=10% Similarity=0.105 Sum_probs=47.6
Q ss_pred ccCCCEEEEecCcH-------HHHHHHHHHH--HhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEE-E---ecchHHH
Q 008627 452 IRDGDVLLTYGSSS-------AVEMILQHAH--ELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY-T---HINAISY 518 (559)
Q Consensus 452 I~dGdvILT~g~Ss-------tV~~iL~~A~--e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTy-I---~DsAvs~ 518 (559)
+.++.+|+..|+-. .+..++.... +.+..++++++-..+...-..+.+.+.+.+ .|++ + ....+..
T Consensus 33 ~~~~~~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~ 111 (200)
T 2bfw_A 33 MDEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRE 111 (200)
T ss_dssp CCSCEEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHH
T ss_pred CCCCCEEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHH
Confidence 44555777777643 3334444443 444578888886644112234444555566 7777 2 3347889
Q ss_pred HhccccEEEEcc
Q 008627 519 IIHEVTRVFLGA 530 (559)
Q Consensus 519 iM~~VdkVlLGA 530 (559)
+|..+|.+|+-.
T Consensus 112 ~~~~ad~~l~ps 123 (200)
T 2bfw_A 112 LYGSVDFVIIPS 123 (200)
T ss_dssp HHTTCSEEEECC
T ss_pred HHHHCCEEEECC
Confidence 999999999854
No 91
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=48.45 E-value=82 Score=28.60 Aligned_cols=38 Identities=24% Similarity=0.048 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcc
Q 008627 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (559)
Q Consensus 493 EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGA 530 (559)
+=.++++.+.+.|+++..|+++.-+.+-+.+|.+|.-.
T Consensus 107 ~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~ 144 (201)
T 3fxa_A 107 ELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVS 144 (201)
T ss_dssp HHHTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECC
T ss_pred HHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEcC
Confidence 34455788888999999999988888888899998643
No 92
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=48.05 E-value=43 Score=35.04 Aligned_cols=90 Identities=18% Similarity=0.196 Sum_probs=53.6
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhcc-ccEEEEcceee
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE-VTRVFLGASSV 533 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~-VdkVlLGAdaI 533 (559)
|..|+.+|...+=..+-+.+++.| ++|.+.|.++..+. .+...|.+.||++.+-.+.. .++.. +|.|+++.-.
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G--~~V~~~D~~~~~~~-~~~~~L~~~gi~~~~g~~~~--~~~~~~~d~vv~spgi- 82 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLG--AIVTVNDGKPFDEN-PTAQSLLEEGIKVVCGSHPL--ELLDEDFCYMIKNPGI- 82 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTT--CEEEEEESSCGGGC-HHHHHHHHTTCEEEESCCCG--GGGGSCEEEEEECTTS-
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEeCCcccCC-hHHHHHHhCCCEEEECCChH--HhhcCCCCEEEECCcC-
Confidence 566777765433233344445544 79999999875332 34578888999877544422 34455 8888776421
Q ss_pred ecCCceecccchHHHHHHHhhCCCCC
Q 008627 534 LSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 534 laNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
-. +...-..|++.|+||
T Consensus 83 ~~---------~~p~~~~a~~~gi~v 99 (451)
T 3lk7_A 83 PY---------NNPMVKKALEKQIPV 99 (451)
T ss_dssp CT---------TSHHHHHHHHTTCCE
T ss_pred CC---------CChhHHHHHHCCCcE
Confidence 11 124455677777775
No 93
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=48.01 E-value=43 Score=36.43 Aligned_cols=95 Identities=17% Similarity=0.235 Sum_probs=58.1
Q ss_pred HHHHhc--ccCCCEEEEecCcHH----HHHHHHHHHHhC-CceEEEEcCCCCC-------------------chHHHHHH
Q 008627 446 KHAVTK--IRDGDVLLTYGSSSA----VEMILQHAHELG-KQFRVVIVDSRPK-------------------HEGKLLLR 499 (559)
Q Consensus 446 ~~Aa~~--I~dGdvILT~g~Sst----V~~iL~~A~e~G-k~FrViVvESRP~-------------------~EG~~LAk 499 (559)
+.|+++ |+||++|...+..+. +..++....+++ +.++++-....+. +-|.. .+
T Consensus 53 eEAv~~~~IkdG~tV~~gGf~g~P~~l~~~Li~AL~~r~~kdLtli~~s~g~~~~~l~~~~~~g~v~r~~~~~~g~~-~r 131 (519)
T 2hj0_A 53 HEAIEKTRLKDGMTISFHHHFREGDYVMNMVLDEIAKMGIKDISIAPSSIANVHEPLIDHIKNGVVTNITSSGLRDK-VG 131 (519)
T ss_dssp HHHHHHTTCCTTCEEEECCTTGGGBCHHHHHHHHHHHTTCCSEEEEESCCCGGGTTHHHHHHTTSEEEEEESBCHHH-HH
T ss_pred HHHHhcCCCCCCCEEEECCccCCchHHHHHHHHHHHhcCCCCeEEEeecCCCcchhHHhHhhcCcEEEEEecCCCcH-HH
Confidence 344556 999999999988743 335555544434 4567765422221 11211 23
Q ss_pred HHHhCCC---ceEEEecchHHHHhc----cccEEEEcceeeecCCceec
Q 008627 500 RLVRKGL---SCTYTHINAISYIIH----EVTRVFLGASSVLSNGTVCS 541 (559)
Q Consensus 500 ~L~~~GI---~vTyI~DsAvs~iM~----~VdkVlLGAdaIlaNGsVvN 541 (559)
++...|- ++.|-......+++. .+|..|+.|...-.+|.+.-
T Consensus 132 ~~i~~G~~~~P~~l~~~gG~~~ll~~~~l~~DVAlI~as~aD~~Gnls~ 180 (519)
T 2hj0_A 132 AAISEGIMENPVIIRSHGGRARAIATDDIHIDVAFLGAPSSDAYGNANG 180 (519)
T ss_dssp HHHHTTCCSSCEEECCHHHHHHHHHHTSSCCSEEEEEESEECTTSCEES
T ss_pred HHHHCCCCCCCceeeccCCHHHHHhcCCCCCcEEEEEecccCCCCcEEE
Confidence 3344453 555543333677775 48999999999999999873
No 94
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=47.87 E-value=53 Score=32.04 Aligned_cols=95 Identities=17% Similarity=0.145 Sum_probs=55.1
Q ss_pred cCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c-chHHHHhc-cccEEEEc
Q 008627 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I-NAISYIIH-EVTRVFLG 529 (559)
Q Consensus 453 ~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D-sAvs~iM~-~VdkVlLG 529 (559)
....+++|.|.+..+..++..+.+.| -+|++.+ |.+.|...+ +...|+.+..+. | ..+-..+. ++..|++
T Consensus 88 ~~~~v~~~~g~~~a~~~~~~~~~~~g--d~vl~~~--p~~~~~~~~--~~~~g~~~~~v~~d~~~l~~~l~~~~~~v~~- 160 (370)
T 2z61_A 88 IPDNIIITGGSSLGLFFALSSIIDDG--DEVLIQN--PCYPCYKNF--IRFLGAKPVFCDFTVESLEEALSDKTKAIII- 160 (370)
T ss_dssp CGGGEEEESSHHHHHHHHHHHHCCTT--CEEEEES--SCCTHHHHH--HHHTTCEEEEECSSHHHHHHHCCSSEEEEEE-
T ss_pred ChhhEEECCChHHHHHHHHHHhcCCC--CEEEEeC--CCchhHHHH--HHHcCCEEEEeCCCHHHHHHhcccCceEEEE-
Confidence 34567888777777776666654333 3555553 566665433 445788888775 2 33333443 3445554
Q ss_pred ceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
..---..|.++..- |+-+|++|++.
T Consensus 161 ~~p~nptG~~~~~~----l~~~~~~~~~~ 185 (370)
T 2z61_A 161 NSPSNPLGEVIDRE----IYEFAYENIPY 185 (370)
T ss_dssp ESSCTTTCCCCCHH----HHHHHHHHCSE
T ss_pred cCCCCCcCcccCHH----HHHHHHHcCCE
Confidence 32222447666655 77778888875
No 95
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=47.86 E-value=55 Score=31.90 Aligned_cols=99 Identities=9% Similarity=0.105 Sum_probs=55.0
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-----------chHHHHhc-
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-----------NAISYIIH- 521 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D-----------sAvs~iM~- 521 (559)
...+++|-|.+..+..++....+.| -+|++. .|.+.+... .+...|+.+.++.. ..+-..+.
T Consensus 85 ~~~i~~~~g~~~a~~~~~~~l~~~g--d~vl~~--~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~ 158 (391)
T 3dzz_A 85 EDWCVFASGVVPAISAMVRQFTSPG--DQILVQ--EPVYNMFYS--VIEGNGRRVISSDLIYENSKYSVNWADLEEKLAT 158 (391)
T ss_dssp GGGEEEESCHHHHHHHHHHHHSCTT--CEEEEC--SSCCHHHHH--HHHHTTCEEEECCCEEETTEEECCHHHHHHHHTS
T ss_pred HHHEEECCCHHHHHHHHHHHhCCCC--CeEEEC--CCCcHHHHH--HHHHcCCEEEEeeeeecCCceeecHHHHHHHHhc
Confidence 4466777776777666666554333 245543 356665433 33446776666542 23444443
Q ss_pred -cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 522 -~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
++..|++ .+.--..|.+++.---..|+-+|++||+.|
T Consensus 159 ~~~~~v~i-~~p~nptG~~~~~~~l~~i~~~~~~~~~~l 196 (391)
T 3dzz_A 159 PSVRMMVF-CNPHNPIGYAWSEEEVKRIAELCAKHQVLL 196 (391)
T ss_dssp TTEEEEEE-ESSBTTTTBCCCHHHHHHHHHHHHHTTCEE
T ss_pred cCceEEEE-ECCCCCCCcccCHHHHHHHHHHHHHCCCEE
Confidence 4455544 333344566665555566777888888753
No 96
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}
Probab=47.31 E-value=1e+02 Score=28.21 Aligned_cols=76 Identities=13% Similarity=0.200 Sum_probs=48.4
Q ss_pred CCCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhc------
Q 008627 454 DGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH------ 521 (559)
Q Consensus 454 dGdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~------ 521 (559)
.|.+||..|-++-+- .+.+...++| .+|++++.|.......+.++|...|..+.++. | ..+..++.
T Consensus 4 ~~~~vlItGasggiG~~~a~~l~~~G--~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (247)
T 2hq1_A 4 KGKTAIVTGSSRGLGKAIAWKLGNMG--ANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAF 81 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT--CEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCC--CEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 356788888776664 4444455545 68888866655556677788887787777663 3 23444444
Q ss_pred -cccEEEEcce
Q 008627 522 -EVTRVFLGAS 531 (559)
Q Consensus 522 -~VdkVlLGAd 531 (559)
.+|.||--|-
T Consensus 82 ~~~d~vi~~Ag 92 (247)
T 2hq1_A 82 GRIDILVNNAG 92 (247)
T ss_dssp SCCCEEEECC-
T ss_pred CCCCEEEECCC
Confidence 5788777663
No 97
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=47.30 E-value=98 Score=30.98 Aligned_cols=98 Identities=18% Similarity=0.107 Sum_probs=56.4
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-----------chHHHHhc-
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-----------NAISYIIH- 521 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D-----------sAvs~iM~- 521 (559)
...+++|-|.+..++.+|..+.+ ..-+|++.+ |.+.|...+ +...|..+.++.. ..+-..+.
T Consensus 119 ~~~v~~~~g~~ea~~~a~~~~~~--~gd~Vi~~~--~~y~~~~~~--~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~ 192 (421)
T 3l8a_A 119 KEDILFIDGVVPAISIALQAFSE--KGDAVLINS--PVYYPFART--IRLNDHRLVENSLQIINGRFEIDFEQLEKDIID 192 (421)
T ss_dssp GGGEEEESCHHHHHHHHHHHHSC--TEEEEEEEE--SCCHHHHHH--HHHTTEEEEEEECEEETTEEECCHHHHHHHHHH
T ss_pred HHHEEEcCCHHHHHHHHHHHhcC--CCCEEEECC--CCcHHHHHH--HHHCCCEEEeccccccCCCeeeCHHHHHHHhhc
Confidence 34567776666677766666533 334566543 667765442 3345766666542 23444443
Q ss_pred -cccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 522 -~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
++..|++ ...--..|.++.+---..|+-+|++||+.
T Consensus 193 ~~~~~vil-~~p~nptG~~~~~~~l~~l~~l~~~~~~~ 229 (421)
T 3l8a_A 193 NNVKIYLL-CSPHNPGGRVWDNDDLIKIAELCKKHGVI 229 (421)
T ss_dssp TTEEEEEE-ESSBTTTTBCCCHHHHHHHHHHHHHHTCE
T ss_pred cCCeEEEE-CCCCCCCCCcCCHHHHHHHHHHHHHcCCE
Confidence 4556655 43444456555555566677788888875
No 98
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=47.27 E-value=1.6e+02 Score=28.84 Aligned_cols=87 Identities=17% Similarity=0.083 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc--------hHHHHhc--cccEEEEcceeee
Q 008627 465 SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH--EVTRVFLGASSVL 534 (559)
Q Consensus 465 stV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds--------Avs~iM~--~VdkVlLGAdaIl 534 (559)
..+..++....+ ..-+|++.+ |.+-|..+...+...|+.+.++... ++-..+. ++..|++- +.-.
T Consensus 73 ~al~~~~~~l~~--~gd~Vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~-~~~n 147 (416)
T 3isl_A 73 AGIEAVLASVIE--PEDDVLIPI--YGRFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMV-HGET 147 (416)
T ss_dssp HHHHHHHHHHCC--TTCEEEEEE--SSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEE-SEET
T ss_pred HHHHHHHHHhcC--CCCEEEEec--CCcccHHHHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEE-ccCC
Confidence 444444444433 233666665 5566654556666788888887632 3333443 34444433 3333
Q ss_pred cCCceecccchHHHHHHHhhCCCCC
Q 008627 535 SNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 535 aNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
..|.+.. -..|+-+|++||+.|
T Consensus 148 ptG~~~~---l~~i~~l~~~~~~~l 169 (416)
T 3isl_A 148 STGRIHP---LKAIGEACRTEDALF 169 (416)
T ss_dssp TTTEECC---CHHHHHHHHHTTCEE
T ss_pred CCceecC---HHHHHHHHHHcCCEE
Confidence 4555544 356778888888753
No 99
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=47.24 E-value=34 Score=37.43 Aligned_cols=68 Identities=25% Similarity=0.252 Sum_probs=49.2
Q ss_pred HHHHHHhcccCCCEEEEecCcHHHHHHHHHHHH---h----C----------------------------CceEEEEcCC
Q 008627 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHE---L----G----------------------------KQFRVVIVDS 488 (559)
Q Consensus 444 Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e---~----G----------------------------k~FrViVvES 488 (559)
+-.....+.++|.++.||+....|.+.|..|-- . + ..+.|+|+-+
T Consensus 201 ~~~~l~~~~~~g~~~~t~~~~~~vr~~L~~aGf~v~~~~~~g~krem~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGg 280 (676)
T 3ps9_A 201 LFNAMARLARPGGTLATFTSAGFVRRGLQDAGFTMQKRKGFGRKREMLCGVMEQTLPLPCSAPWFNRTGSSKREAAIIGG 280 (676)
T ss_dssp HHHHHHHHEEEEEEEEESCCCHHHHHHHHHHTCEEEEEECSTTCCEEEEEECCSCCCCCCSCGGGCCCCCSCCEEEEECC
T ss_pred HHHHHHHHhCCCCEEEeccCcHHHHHHHHhCCeEEEeccccccchhhhheeccccccccccCCcccCccCCCCCEEEECC
Confidence 334444578889999999999999999987630 0 0 0145666644
Q ss_pred CCCchHHHHHHHHHhCCCceEEEec
Q 008627 489 RPKHEGKLLLRRLVRKGLSCTYTHI 513 (559)
Q Consensus 489 RP~~EG~~LAk~L~~~GI~vTyI~D 513 (559)
+.-|...|..|++.|++|+++--
T Consensus 281 --GiaGlsaA~~La~~G~~V~vlEk 303 (676)
T 3ps9_A 281 --GIASALLSLALLRRGWQVTLYCA 303 (676)
T ss_dssp --SHHHHHHHHHHHTTTCEEEEEES
T ss_pred --CHHHHHHHHHHHHCCCeEEEEeC
Confidence 34577889999999999999864
No 100
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=47.02 E-value=2e+02 Score=29.20 Aligned_cols=105 Identities=13% Similarity=0.048 Sum_probs=67.9
Q ss_pred HHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCC---------CC---------chHHHHHHHHHhC-
Q 008627 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR---------PK---------HEGKLLLRRLVRK- 504 (559)
Q Consensus 444 Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESR---------P~---------~EG~~LAk~L~~~- 504 (559)
+...+.+.|.+ ..||..|..++-..++......|.. ++.++|.. -. .-...+++.|.+.
T Consensus 26 ~G~~~q~~L~~-~~VlivG~GGlG~~ia~~La~~Gvg-~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~ln 103 (346)
T 1y8q_A 26 WGLEAQKRLRA-SRVLLVGLKGLGAEIAKNLILAGVK-GLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLN 103 (346)
T ss_dssp HCHHHHHHHHT-CEEEEECCSHHHHHHHHHHHHHTCS-EEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTC
T ss_pred hCHHHHHHHhC-CeEEEECCCHHHHHHHHHHHHcCCC-EEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHC
Confidence 45666677764 6899999998888888887777854 44455432 11 1133457778775
Q ss_pred -CCceEEEecch---HHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 505 -GLSCTYTHINA---ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 505 -GI~vTyI~DsA---vs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+++++.+...- ...++...|.||.+.|.+ ---+.|.-+|+.++||+
T Consensus 104 p~v~v~~~~~~~~~~~~~~~~~~dvVv~~~d~~---------~~r~~ln~~~~~~~ip~ 153 (346)
T 1y8q_A 104 PMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSR---------DVIVKVDQICHKNSIKF 153 (346)
T ss_dssp TTSEEEEECSCGGGCCHHHHTTCSEEEEESCCH---------HHHHHHHHHHHHTTCEE
T ss_pred CCeEEEEEecccCcchHHHhcCCCEEEEcCCCH---------HHHHHHHHHHHHcCCCE
Confidence 56777665421 345678899998876542 22345666788888885
No 101
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=46.94 E-value=47 Score=34.76 Aligned_cols=86 Identities=10% Similarity=0.096 Sum_probs=56.6
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHH-----hccccEEEEc
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI-----IHEVTRVFLG 529 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~i-----M~~VdkVlLG 529 (559)
++.|+.+|+..+-..+.+.+.+.| +.|+|+|..|. .++.|.+.|+++.+- |..=..+ +.+++.||+.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g--~~vvvId~d~~-----~v~~~~~~g~~vi~G-Dat~~~~L~~agi~~A~~viv~ 75 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSG--VKMVVLDHDPD-----HIETLRKFGMKVFYG-DATRMDLLESAGAAKAEVLINA 75 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEECCHH-----HHHHHHHTTCCCEES-CTTCHHHHHHTTTTTCSEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHH-----HHHHHHhCCCeEEEc-CCCCHHHHHhcCCCccCEEEEC
Confidence 456888899877666666666655 57888887753 466777889887554 3322222 3468888876
Q ss_pred ceeeecCCceecccchHHHHHHHhhCCC
Q 008627 530 ASSVLSNGTVCSRVGTACVAMVAYGFHI 557 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~~IALaAk~~~V 557 (559)
.+. ..-+..+++.|+.++.
T Consensus 76 ~~~---------~~~n~~i~~~ar~~~p 94 (413)
T 3l9w_A 76 IDD---------PQTNLQLTEMVKEHFP 94 (413)
T ss_dssp CSS---------HHHHHHHHHHHHHHCT
T ss_pred CCC---------hHHHHHHHHHHHHhCC
Confidence 542 3445667777777653
No 102
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=46.85 E-value=71 Score=25.79 Aligned_cols=56 Identities=16% Similarity=0.078 Sum_probs=37.2
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCC-CCchHHHHHHHHHhC----CCceEEEecc
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR-PKHEGKLLLRRLVRK----GLSCTYTHIN 514 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESR-P~~EG~~LAk~L~~~----GI~vTyI~Ds 514 (559)
.|-.|.++...... +....+ ..+.++++|-. |...|.++++.|.+. ++++.+++..
T Consensus 26 ~~~~v~~~~~~~~a---~~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~ 86 (133)
T 3nhm_A 26 GEFDCTTAADGASG---LQQALA--HPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGY 86 (133)
T ss_dssp TTSEEEEESSHHHH---HHHHHH--SCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESC
T ss_pred CCcEEEEECCHHHH---HHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCC
Confidence 45556555554443 333322 35888888854 788999999999985 6777777753
No 103
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=46.64 E-value=1.6e+02 Score=26.30 Aligned_cols=38 Identities=13% Similarity=-0.010 Sum_probs=30.4
Q ss_pred chHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEc
Q 008627 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (559)
Q Consensus 492 ~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLG 529 (559)
.+-.++++.+.+.|+++..|+++.-+.+.+.+|.+|.-
T Consensus 130 ~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l~~ 167 (198)
T 2xbl_A 130 PNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEV 167 (198)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSCCCTHHHHCSEEEEC
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCCcHHHhCCEEEEe
Confidence 34556788888999999999998777777789988743
No 104
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=46.59 E-value=52 Score=32.64 Aligned_cols=53 Identities=19% Similarity=0.209 Sum_probs=36.1
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY 510 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTy 510 (559)
.+..|++||.+|.+.+=..++..|+..|- +||+++..+.. .++++ +.|.+..+
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga--~Vi~~~~~~~~--~~~~~---~lGa~~v~ 225 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGA--EVSVFARNEHK--KQDAL---SMGVKHFY 225 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHTTC--EEEEECSSSTT--HHHHH---HTTCSEEE
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHH---hcCCCeec
Confidence 57889999999975444566666666554 89999877653 33444 45666555
No 105
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=46.48 E-value=1.3e+02 Score=28.42 Aligned_cols=38 Identities=8% Similarity=-0.165 Sum_probs=31.0
Q ss_pred CchHHHHHHHHHhCCCceEEEecchHH-----------HHhccccEEEE
Q 008627 491 KHEGKLLLRRLVRKGLSCTYTHINAIS-----------YIIHEVTRVFL 528 (559)
Q Consensus 491 ~~EG~~LAk~L~~~GI~vTyI~DsAvs-----------~iM~~VdkVlL 528 (559)
..+-.++++.+.+.|+++..|++..-+ .+.+.+|.+|.
T Consensus 121 t~~~i~~~~~Ak~~G~~vI~IT~~~~s~~~~~~~~~g~~La~~aD~~l~ 169 (243)
T 3cvj_A 121 NTVPVEMAIESRNIGAKVIAMTSMKHSQKVTSRHKSGKKLYEYADVVLD 169 (243)
T ss_dssp SHHHHHHHHHHHHHTCEEEEEECHHHHHHSCCCSTTSCCGGGGCSEEEE
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCcccccccccCCCcCcHHHhCCEEEE
Confidence 345567789999999999999998777 67778999885
No 106
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=46.34 E-value=56 Score=31.70 Aligned_cols=101 Identities=10% Similarity=0.052 Sum_probs=54.7
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec------chHHHHhc-ccc
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI------NAISYIIH-EVT 524 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D------sAvs~iM~-~Vd 524 (559)
+....+++|-|.+..+..++....+.|. +|++.+ |.+.+... .+...|+++.++.. ..+-..+. +..
T Consensus 79 ~~~~~i~~t~g~~~a~~~~~~~~~~~gd--~vl~~~--~~~~~~~~--~~~~~g~~~~~~~~~~~~d~~~l~~~l~~~~~ 152 (377)
T 3fdb_A 79 ARPEWIFPIPDVVRGLYIAIDHFTPAQS--KVIVPT--PAYPPFFH--LLSATQREGIFIDATGGINLHDVEKGFQAGAR 152 (377)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHSCTTC--CEEEEE--SCCTHHHH--HHHHHTCCEEEEECTTSCCHHHHHHHHHTTCC
T ss_pred CCHHHEEEeCChHHHHHHHHHHhcCCCC--EEEEcC--CCcHhHHH--HHHHcCCEEEEccCCCCCCHHHHHHHhccCCC
Confidence 3445677777777776666665543333 455543 56666533 23345888888763 23444443 344
Q ss_pred EEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 525 kVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.|++- +.--..|.++..---..|+-+|++||+.+
T Consensus 153 ~v~i~-~p~nptG~~~~~~~l~~l~~~~~~~~~~l 186 (377)
T 3fdb_A 153 SILLC-NPYNPLGMVFAPEWLNELCDLAHRYDARV 186 (377)
T ss_dssp EEEEE-SSBTTTTBCCCHHHHHHHHHHHHHTTCEE
T ss_pred EEEEe-CCCCCCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 44433 22223355544434445666788888753
No 107
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=45.73 E-value=1.3e+02 Score=30.03 Aligned_cols=98 Identities=13% Similarity=0.187 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHhcccC--CCEEEEecC---cHHHHHHHHHHHH-------------------hCCceEEEEcCCC-
Q 008627 435 EKIILADRVIVKHAVTKIRD--GDVLLTYGS---SSAVEMILQHAHE-------------------LGKQFRVVIVDSR- 489 (559)
Q Consensus 435 ErI~~A~e~Ia~~Aa~~I~d--GdvILT~g~---SstV~~iL~~A~e-------------------~Gk~FrViVvESR- 489 (559)
|+|....+.|.+.+.+.... +.+++.|+- |.+++.++..+.. .+..+.|+.+|+.
T Consensus 32 e~i~~~~~~il~~~~~~~~~~~~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~ 111 (306)
T 2wsi_A 32 EAIRLTRKYLLSEIFVRWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEE 111 (306)
T ss_dssp HHHHHHHHHHHHTTTTTSCSSSSSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTT
T ss_pred HHHHHHHHHHHHHHHHHcccccCCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCC
Confidence 33333333244444444442 457777754 3455566655521 1456788877764
Q ss_pred CCchHHHHHHHHHh-CCCceEEEec---------chHHHHhc---cccEEEEccee
Q 008627 490 PKHEGKLLLRRLVR-KGLSCTYTHI---------NAISYIIH---EVTRVFLGASS 532 (559)
Q Consensus 490 P~~EG~~LAk~L~~-~GI~vTyI~D---------sAvs~iM~---~VdkVlLGAda 532 (559)
..-|-.++++++++ .|+++..+.- .++..+++ ..+.+|+|..+
T Consensus 112 ~fpet~~fv~~~~~~ygl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rr 167 (306)
T 2wsi_A 112 TFPTLENFVLETSERYCLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRH 167 (306)
T ss_dssp CCHHHHHHHHHHHHHTTEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEec
Confidence 44466777888765 6888766532 23333333 46788888644
No 108
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=45.65 E-value=91 Score=30.26 Aligned_cols=102 Identities=12% Similarity=-0.028 Sum_probs=59.7
Q ss_pred cCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecch-------HHHHh-cccc
Q 008627 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA-------ISYII-HEVT 524 (559)
Q Consensus 453 ~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsA-------vs~iM-~~Vd 524 (559)
....+++|-|.+..+..++....+.+..-+|++. .|.+.+... .+...|+++.++.... +-..+ +++.
T Consensus 81 ~~~~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~--~p~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~ 156 (376)
T 3ezs_A 81 KENELISTLGSREVLFNFPSFVLFDYQNPTIAYP--NPFYQIYEG--AAKFIKAKSLLMPLTKENDFTPSLNEKELQEVD 156 (376)
T ss_dssp CGGGEEEESSSHHHHHHHHHHHTTTCSSCEEEEE--ESCCTHHHH--HHHHTTCEEEEEECCGGGTSCCCCCHHHHHHCS
T ss_pred CHHHEEECcCcHHHHHHHHHHHcCCCCCCEEEEe--cCCcHhHHH--HHHHcCCEEEEcccCCCCCcchhHHhhhccCCC
Confidence 4457888888888887777766543002355554 456665433 3445788888876322 21222 3567
Q ss_pred EEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 525 kVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.|++- ..--..|.++..---..|+-+|++||+.+
T Consensus 157 ~v~~~-~p~nptG~~~~~~~l~~i~~~~~~~~~~l 190 (376)
T 3ezs_A 157 LVILN-SPNNPTGRTLSLEELISWVKLALKHDFIL 190 (376)
T ss_dssp EEEEC-SSCTTTCCCCCHHHHHHHHHHHHHHTCEE
T ss_pred EEEEc-CCCCCcCCCCCHHHHHHHHHHHHHcCcEE
Confidence 77763 33334455555444455666788888753
No 109
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=44.77 E-value=1.1e+02 Score=30.45 Aligned_cols=99 Identities=11% Similarity=0.046 Sum_probs=50.4
Q ss_pred CCCEEE--EecCcHHHHHHH--HHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec----------chHHHH
Q 008627 454 DGDVLL--TYGSSSAVEMIL--QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYI 519 (559)
Q Consensus 454 dGdvIL--T~g~SstV~~iL--~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D----------sAvs~i 519 (559)
..++++ |.|-+..+..++ ......|. +|++.+ |.+.+.. ..+...|+++.++.. ..+-..
T Consensus 96 ~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd--~Vl~~~--p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 169 (412)
T 1yaa_A 96 EDRVISVQSLSGTGALHISAKFFSKFFPDK--LVYLSK--PTWANHM--AIFENQGLKTATYPYWANETKSLDLNGFLNA 169 (412)
T ss_dssp TTCEEEEEEEHHHHHHHHHHHHHHHHCTTC--CEEEEE--SCCTTHH--HHHHTTTCCEEEEECEETTTTEECHHHHHHH
T ss_pred cceEEEEeccchHhHHHHHHHHHHHhCCCC--EEEEeC--CCCccHH--HHHHHcCceEEEEeeecCCCCccCHHHHHHH
Confidence 446777 777776666552 23333333 455553 5555543 233446777776653 122233
Q ss_pred hcc---ccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 520 IHE---VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 520 M~~---VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
+.+ .++|++=...-...|.+++.-=-..|+-+|+.|++.
T Consensus 170 l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ 211 (412)
T 1yaa_A 170 IQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHI 211 (412)
T ss_dssp HHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCE
T ss_pred HHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 332 245554333334445555443333566677777764
No 110
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=44.73 E-value=1.5e+02 Score=29.18 Aligned_cols=100 Identities=17% Similarity=0.215 Sum_probs=54.7
Q ss_pred CCEEEEecCcHHHHHHHHHHHH--hCCceEEEEcCCCCCchHHH-HHHHHHhCCCceEEEecc--------hHHHHhccc
Q 008627 455 GDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKL-LLRRLVRKGLSCTYTHIN--------AISYIIHEV 523 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e--~Gk~FrViVvESRP~~EG~~-LAk~L~~~GI~vTyI~Ds--------Avs~iM~~V 523 (559)
..+++|-|.+..+..+|..+.+ .+..-+|++. .|.+.+.. .+..+...|+.+.++... .+-..+.+=
T Consensus 86 ~~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~ 163 (423)
T 3lvm_A 86 REIVFTSGATESDNLAIKGAANFYQKKGKHIITS--KTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDD 163 (423)
T ss_dssp GGEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEE--TTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTT
T ss_pred CeEEEeCChHHHHHHHHHHHHHhhccCCCEEEEC--CccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCCC
Confidence 3677777777766666654442 1223355554 34555543 345556678888888632 333333332
Q ss_pred cEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 524 dkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.++|+=...--..|.++. -..|+-+|++||+.|
T Consensus 164 ~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~l 196 (423)
T 3lvm_A 164 TILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIY 196 (423)
T ss_dssp EEEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEE
T ss_pred cEEEEEeCCCCCCccccC---HHHHHHHHHHcCCEE
Confidence 344443332234465555 345777888888753
No 111
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=44.57 E-value=78 Score=26.13 Aligned_cols=68 Identities=9% Similarity=0.042 Sum_probs=38.1
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHh-CCCceEEEecc-h---HHH-HhccccEEEEc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTHIN-A---ISY-IIHEVTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~-~GI~vTyI~Ds-A---vs~-iM~~VdkVlLG 529 (559)
..|+.+|....-..+.....+.| ++|+++|..+. .++.|.+ .|+.+.. .|. . +.. .+.++|.||+-
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g--~~v~~~d~~~~-----~~~~~~~~~~~~~~~-~d~~~~~~l~~~~~~~~d~vi~~ 76 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKG--HDIVLIDIDKD-----ICKKASAEIDALVIN-GDCTKIKTLEDAGIEDADMYIAV 76 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHH-----HHHHHHHHCSSEEEE-SCTTSHHHHHHTTTTTCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHH-----HHHHHHHhcCcEEEE-cCCCCHHHHHHcCcccCCEEEEe
Confidence 56888888655555555555555 57888876542 2344443 3664332 221 1 111 15678998887
Q ss_pred ce
Q 008627 530 AS 531 (559)
Q Consensus 530 Ad 531 (559)
..
T Consensus 77 ~~ 78 (140)
T 1lss_A 77 TG 78 (140)
T ss_dssp CS
T ss_pred eC
Confidence 53
No 112
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=44.15 E-value=34 Score=32.99 Aligned_cols=71 Identities=20% Similarity=0.258 Sum_probs=43.7
Q ss_pred EEEEecCcHHHHHHHHHHHHhC-CceEEEEcC-CCCCchHHHHHHHHHhCCCceEEEe-----cchHHHHhc--cccEEE
Q 008627 457 VLLTYGSSSAVEMILQHAHELG-KQFRVVIVD-SRPKHEGKLLLRRLVRKGLSCTYTH-----INAISYIIH--EVTRVF 527 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~G-k~FrViVvE-SRP~~EG~~LAk~L~~~GI~vTyI~-----DsAvs~iM~--~VdkVl 527 (559)
.||.-|..+..+.+|.. .+.+ ..++|..|= .+|...|.+.|+ ++||++.++. +..+...++ ++|.++
T Consensus 12 ~vl~SG~gsnl~all~~-~~~~~~~~~I~~Vis~~~~a~~l~~A~---~~gIp~~~~~~~~~~~~~~~~~L~~~~~Dliv 87 (215)
T 3kcq_A 12 GVLISGRGSNLEALAKA-FSTEESSVVISCVISNNAEARGLLIAQ---SYGIPTFVVKRKPLDIEHISTVLREHDVDLVC 87 (215)
T ss_dssp EEEESSCCHHHHHHHHH-TCCC-CSEEEEEEEESCTTCTHHHHHH---HTTCCEEECCBTTBCHHHHHHHHHHTTCSEEE
T ss_pred EEEEECCcHHHHHHHHH-HHcCCCCcEEEEEEeCCcchHHHHHHH---HcCCCEEEeCcccCChHHHHHHHHHhCCCEEE
Confidence 45666666666655554 4444 345655443 377777765544 4799999874 245555665 589888
Q ss_pred Ecce
Q 008627 528 LGAS 531 (559)
Q Consensus 528 LGAd 531 (559)
+-+-
T Consensus 88 lagy 91 (215)
T 3kcq_A 88 LAGF 91 (215)
T ss_dssp ESSC
T ss_pred EeCC
Confidence 7653
No 113
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=43.85 E-value=1.4e+02 Score=24.77 Aligned_cols=58 Identities=22% Similarity=0.205 Sum_probs=31.0
Q ss_pred HHHHHhCCCce---EEEe--cchHHHHh---c--cccEEEEcceeeecCCceec-ccchHHHHHHHhhCCCCC
Q 008627 498 LRRLVRKGLSC---TYTH--INAISYII---H--EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 498 Ak~L~~~GI~v---TyI~--DsAvs~iM---~--~VdkVlLGAdaIlaNGsVvN-KvGT~~IALaAk~~~VPV 559 (559)
.+.+.+.|+++ +... ......++ + ++|.|++|++.- |.+-. -.|+-.-.+ .++.++||
T Consensus 76 ~~~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~---~~~~~~~~Gs~~~~v-l~~~~~pV 144 (147)
T 3hgm_A 76 KTRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGT---NGDKSLLLGSVAQRV-AGSAHCPV 144 (147)
T ss_dssp HHHHHHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSCT---TCCSCCCCCHHHHHH-HHHCSSCE
T ss_pred HHHHHhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCC---ccccceeeccHHHHH-HhhCCCCE
Confidence 34455679887 4432 22223333 3 699999999752 22222 246544444 34445665
No 114
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=43.63 E-value=18 Score=35.15 Aligned_cols=95 Identities=11% Similarity=0.033 Sum_probs=51.7
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc--------hHHHHhcc-ccEE
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIHE-VTRV 526 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds--------Avs~iM~~-VdkV 526 (559)
.+++|.|.+..+. +|..+.+.| -+|++.+ |.+-|..+...+...|+.+.++... .+-..+.+ -.++
T Consensus 56 ~v~~~~g~t~al~-~~~~~~~~g--d~vi~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~ 130 (384)
T 3zrp_A 56 PLIIPGGGTSAME-SVTSLLKPN--DKILVVS--NGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKL 130 (384)
T ss_dssp EEEEESCHHHHHH-HGGGGCCTT--CEEEEEC--SSHHHHHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEE
T ss_pred EEEEcCCcHHHHH-HHHhhcCCC--CEEEEec--CCcchHHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcE
Confidence 4677777677776 665554333 3566653 3454544444445678888887532 23333433 1233
Q ss_pred EEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 527 lLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
|+=...-...|.++. -..|+-+|++||+.
T Consensus 131 v~~~~~~nptG~~~~---l~~i~~l~~~~~~~ 159 (384)
T 3zrp_A 131 VALTHVETSTGVREP---VKDVINKIRKYVEL 159 (384)
T ss_dssp EEEESEETTTTEECC---HHHHHHHHGGGEEE
T ss_pred EEEeCCCCCCceECc---HHHHHHHHHhcCCE
Confidence 333333334455544 34577788888765
No 115
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=43.42 E-value=17 Score=36.03 Aligned_cols=48 Identities=13% Similarity=0.086 Sum_probs=37.7
Q ss_pred EEEEcCCCCCchHH-HHHHHHHhCCCceEEEecchHH---HHhccccEEEEc
Q 008627 482 RVVIVDSRPKHEGK-LLLRRLVRKGLSCTYTHINAIS---YIIHEVTRVFLG 529 (559)
Q Consensus 482 rViVvESRP~~EG~-~LAk~L~~~GI~vTyI~DsAvs---~iM~~VdkVlLG 529 (559)
+|.+||+....+|. .+.+.|.+.|++|+++....+. ..+.+.|.||++
T Consensus 6 ~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~~yDvIIl~ 57 (259)
T 3rht_A 6 RVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLAKQDLVILS 57 (259)
T ss_dssp CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHHTCSEEEEE
T ss_pred eEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHhcCCEEEEc
Confidence 67777766555555 4577899999999999987773 467899999986
No 116
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=43.39 E-value=45 Score=37.32 Aligned_cols=69 Identities=14% Similarity=0.288 Sum_probs=45.8
Q ss_pred CEEEEecCc--HHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHh-C--CCceEEEecchHHHHhc-cccEEE
Q 008627 456 DVLLTYGSS--SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-K--GLSCTYTHINAISYIIH-EVTRVF 527 (559)
Q Consensus 456 dvILT~g~S--stV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~-~--GI~vTyI~DsAvs~iM~-~VdkVl 527 (559)
.+||..|.. -+|...|..+.+.+++++||.+|-.|. ...++++.+ . +=.||+|.-.+=-.-++ +||.+|
T Consensus 359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~---A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIV 433 (637)
T 4gqb_A 359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN---AVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIV 433 (637)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH---HHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEE
T ss_pred cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH---HHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEE
Confidence 578888655 467788888888888999999998774 234444443 2 33588887544443444 577665
No 117
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=43.36 E-value=2e+02 Score=26.51 Aligned_cols=37 Identities=0% Similarity=-0.255 Sum_probs=29.9
Q ss_pred chHHHHHHHHHhCCCceEEEecchHHHHhccc---cEEEE
Q 008627 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEV---TRVFL 528 (559)
Q Consensus 492 ~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~V---dkVlL 528 (559)
.+=.++++.+.+.|+++..|+++.-+.+-+.+ |.+|.
T Consensus 128 ~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d~~l~ 167 (201)
T 3trj_A 128 ENILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDIELR 167 (201)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTCEEEE
T ss_pred HHHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCCEEEE
Confidence 34556788888999999999988777777778 98875
No 118
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*
Probab=43.09 E-value=75 Score=34.29 Aligned_cols=95 Identities=19% Similarity=0.379 Sum_probs=56.6
Q ss_pred HHHHHhcccCCCEEEEecCc-----HHHHHHHH-HH---HHhCCceE--EEEcC-CCCCchHH----------------H
Q 008627 445 VKHAVTKIRDGDVLLTYGSS-----SAVEMILQ-HA---HELGKQFR--VVIVD-SRPKHEGK----------------L 496 (559)
Q Consensus 445 a~~Aa~~I~dGdvILT~g~S-----stV~~iL~-~A---~e~Gk~Fr--ViVvE-SRP~~EG~----------------~ 496 (559)
++.|+++|++||+|.+.|+. ..+...|. ++ +..|..+. ++... ..|..++. .
T Consensus 17 aeEAv~~IkdGd~V~~~Gf~~~G~P~~L~~ALa~R~~~~~~~g~~~~i~l~~~~~~~~~~~~~l~~~g~i~~~~~~~~~~ 96 (514)
T 4eu9_A 17 AETASELIKHGDVVGTSGFTGAGYPKEVPKALAQRMEAAHDRGEKYQISLITGASTGPQLDGELAKANGVYFRSPFNTDA 96 (514)
T ss_dssp HHHHHTTCCTTCEEEECCBTTBSCCCHHHHHHHHHHHHHHHTTCCCCEEEECSSCCCTTTHHHHHHTTCEEEEESCCCCH
T ss_pred HHHHHHhCCCCCEEEECCCCCCcCHHHHHHHHHHHHHHhhcCCcceeEEEEEecCcCcccccccccCCCEEEEEecCCCH
Confidence 34566789999999998642 23444443 32 22454444 44333 23444432 1
Q ss_pred HHHHHHhCCCceEEEe--cchHHHHhc-----cccEEEEcceeeecCCcee
Q 008627 497 LLRRLVRKGLSCTYTH--INAISYIIH-----EVTRVFLGASSVLSNGTVC 540 (559)
Q Consensus 497 LAk~L~~~GI~vTyI~--DsAvs~iM~-----~VdkVlLGAdaIlaNGsVv 540 (559)
..+++.+.| .+.|++ .+.+...+. .+|..|+-+..+-.+|.+.
T Consensus 97 ~~R~~i~~G-~~~y~p~~ls~~~~~~~~~~~~~iDVAlI~as~~De~Gnis 146 (514)
T 4eu9_A 97 TMRNRINAG-ETEYFDNHLGQVAGRAVQGNYGKFNIALVEATAITEDGGIV 146 (514)
T ss_dssp HHHHHHHTT-SSEECCCCGGGHHHHHHHTTTCCCCEEEEEEEEECTTCCEE
T ss_pred HHHHHHHcC-CeeEECccccchHHHHHhccCCCceEEEEEEEcCCCCceEE
Confidence 234555666 345544 456654432 5899999999999999975
No 119
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=42.62 E-value=69 Score=31.58 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=31.0
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~ 512 (559)
...+++|-|.+..+..++..+.+.| -+|++.+ |.+.|.. ..+...|+.+..+.
T Consensus 98 ~~~v~~t~g~t~a~~~~~~~~~~~g--d~vl~~~--p~~~~~~--~~~~~~g~~~~~v~ 150 (407)
T 2zc0_A 98 PENIVITIGGTGALDLLGRVLIDPG--DVVITEN--PSYINTL--LAFEQLGAKIEGVP 150 (407)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCHHHH--HHHHTTTCEEEEEE
T ss_pred cceEEEecCHHHHHHHHHHHhcCCC--CEEEEeC--CChHHHH--HHHHHcCCEEEEcc
Confidence 3467777777777666666554333 3555543 5666643 33445677777664
No 120
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=42.51 E-value=40 Score=33.10 Aligned_cols=69 Identities=22% Similarity=0.337 Sum_probs=40.8
Q ss_pred cccCCCEEEEecCcHHH-HHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-ch-HHHHhccccEEE
Q 008627 451 KIRDGDVLLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-NA-ISYIIHEVTRVF 527 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV-~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D-sA-vs~iM~~VdkVl 527 (559)
.++.|++||.+|-++.| ..++..|+..|- +||++.+. +-.+++++ .|.+.++-.. .. +...+..+|.||
T Consensus 149 ~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga--~vi~~~~~---~~~~~~~~---lGa~~~i~~~~~~~~~~~~~g~D~v~ 220 (321)
T 3tqh_A 149 EVKQGDVVLIHAGAGGVGHLAIQLAKQKGT--TVITTASK---RNHAFLKA---LGAEQCINYHEEDFLLAISTPVDAVI 220 (321)
T ss_dssp TCCTTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEECH---HHHHHHHH---HTCSEEEETTTSCHHHHCCSCEEEEE
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcCC--EEEEEecc---chHHHHHH---cCCCEEEeCCCcchhhhhccCCCEEE
Confidence 57889999999854444 556666666564 78887642 22445554 4666544322 22 444445566666
No 121
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=41.77 E-value=55 Score=31.75 Aligned_cols=95 Identities=14% Similarity=0.033 Sum_probs=53.9
Q ss_pred EEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------chHHHHhc--cccEE
Q 008627 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EVTRV 526 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D--------sAvs~iM~--~VdkV 526 (559)
+++|-|-+..+..++..+.+.| -+|++.+ +.+-|..+...+...|+.+..+.. .++-..+. ++..|
T Consensus 77 v~~~~gg~~al~~~~~~~~~~g--d~vl~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v 152 (393)
T 3kgw_A 77 LVVSGSGHCAMETALFNLLEPG--DSFLTGT--NGIWGMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLL 152 (393)
T ss_dssp EEESCCTTTHHHHHHHHHCCTT--CEEEEEE--SSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEE
T ss_pred EEEeCCcHHHHHHHHHhcCCCC--CEEEEEe--CCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEE
Confidence 6677777777776666654333 3566653 444555555666677888877752 23333343 35555
Q ss_pred EEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 527 lLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
++- ..--..|.++. -..|+-+|++||+.|
T Consensus 153 ~~~-~~~nptG~~~~---l~~i~~l~~~~~~~l 181 (393)
T 3kgw_A 153 FLV-HGESSTGVVQP---LDGFGELCHRYQCLL 181 (393)
T ss_dssp EEE-SEETTTTEECC---CTTHHHHHHHTTCEE
T ss_pred EEe-ccCCcchhhcc---HHHHHHHHHHcCCEE
Confidence 443 33333455444 235677788888753
No 122
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=41.52 E-value=12 Score=38.64 Aligned_cols=78 Identities=13% Similarity=0.186 Sum_probs=48.4
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcc
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGA 530 (559)
...++.+||..|......++++.|++.| ++|+++| .+......++... .-+...|.-..++-.+.+++|.|+.+.
T Consensus 20 ~mm~~~~I~ilGgG~lg~~l~~aa~~lG--~~v~~~d-~~~~p~~~~ad~~--~~~~~~~~d~~~l~~~a~~~d~i~~e~ 94 (403)
T 3k5i_A 20 HMWNSRKVGVLGGGQLGRMLVESANRLN--IQVNVLD-ADNSPAKQISAHD--GHVTGSFKEREAVRQLAKTCDVVTAEI 94 (403)
T ss_dssp -CCSCCEEEEECCSHHHHHHHHHHHHHT--CEEEEEE-STTCTTGGGCCSS--CCEESCTTCHHHHHHHHTTCSEEEESS
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEE-CCCCcHHHhcccc--ceeecCCCCHHHHHHHHHhCCEEEECC
Confidence 3446789999999998889999998866 6777777 5544333322110 111111222346666777888887766
Q ss_pred eee
Q 008627 531 SSV 533 (559)
Q Consensus 531 daI 533 (559)
+.+
T Consensus 95 e~~ 97 (403)
T 3k5i_A 95 EHV 97 (403)
T ss_dssp SCS
T ss_pred CCC
Confidence 554
No 123
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D
Probab=41.27 E-value=81 Score=30.50 Aligned_cols=70 Identities=23% Similarity=0.239 Sum_probs=41.7
Q ss_pred ccCCCEEEEecCcHHH-HHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--chHHHHhccccEEEE
Q 008627 452 IRDGDVLLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--NAISYIIHEVTRVFL 528 (559)
Q Consensus 452 I~dGdvILT~g~SstV-~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D--sAvs~iM~~VdkVlL 528 (559)
++.|++||.+|.++.| ..++..|+..| .+|+++++.+.. .+++++ .|.+..+-.. ..+...+..+|.||-
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~G--a~Vi~~~~~~~~--~~~~~~---~ga~~~~~~~~~~~~~~~~~~~d~vid 195 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEK--LALPLA---LGAEEAATYAEVPERAKAWGGLDLVLE 195 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGG--SHHHHH---TTCSEEEEGGGHHHHHHHTTSEEEEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHH--HHHHHh---cCCCEEEECCcchhHHHHhcCceEEEE
Confidence 7889999999996655 45556666655 489999876543 234443 5665443322 122222245666654
No 124
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=41.27 E-value=73 Score=31.70 Aligned_cols=97 Identities=10% Similarity=0.097 Sum_probs=52.0
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecch-------HHHH---h-ccc
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA-------ISYI---I-HEV 523 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsA-------vs~i---M-~~V 523 (559)
..+++|.|.+..+..++......| -+|++.+ |.+.|...+ +...|+.+..+.... +..+ + +++
T Consensus 100 ~~v~~t~g~~~a~~~~~~~~~~~g--d~Vl~~~--p~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~ 173 (412)
T 2x5d_A 100 SEAIVTIGSKEGLAHLMLATLDHG--DTILVPN--PSYPIHIYG--AVIAGAQVRSVPLVPGIDFFNELERAIRESIPKP 173 (412)
T ss_dssp TSEEEESCHHHHHHHHHHHHCCTT--CEEEEEE--SCCHHHHHH--HHHHTCEEEEEECSTTSCHHHHHHHHHHTEESCC
T ss_pred cCEEEcCChHHHHHHHHHHhCCCC--CEEEEcC--CCchhHHHH--HHHcCCEEEEeecCCccCCCCCHHHHHHhcccCc
Confidence 467788777777766666553333 3555553 667665443 234577777775321 1112 1 245
Q ss_pred cEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 524 dkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
..|++ .+.--..|.++..---..|+-+|++||+.
T Consensus 174 ~~v~l-~~p~nptG~~~~~~~l~~l~~~~~~~~~~ 207 (412)
T 2x5d_A 174 RMMIL-GFPSNPTAQCVELDFFERVVALAKQYDVM 207 (412)
T ss_dssp SEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCE
T ss_pred eEEEE-CCCCCCCCCcCCHHHHHHHHHHHHHcCCE
Confidence 56665 33222345554432224566678888765
No 125
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=40.71 E-value=68 Score=30.62 Aligned_cols=71 Identities=20% Similarity=0.131 Sum_probs=42.0
Q ss_pred EEEEecCcHHHHHHHHHHHHhCC-ceEEEEcC-CCCCchHHHHHHHHHhCCCceEEEe----------cchHHHHhc--c
Q 008627 457 VLLTYGSSSAVEMILQHAHELGK-QFRVVIVD-SRPKHEGKLLLRRLVRKGLSCTYTH----------INAISYIIH--E 522 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~Gk-~FrViVvE-SRP~~EG~~LAk~L~~~GI~vTyI~----------DsAvs~iM~--~ 522 (559)
.||.-|+.+..+.+|. +.+.+. .++|..+= .+|...|.+.| .+.||++.++. |..+-..++ +
T Consensus 4 ~vl~Sg~gsnl~ali~-~~~~~~~~~~i~~Vis~~~~~~~~~~A---~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~ 79 (212)
T 1jkx_A 4 VVLISGNGSNLQAIID-ACKTNKIKGTVRAVFSNKADAFGLERA---RQAGIATHTLIASAFDSREAYDRELIHEIDMYA 79 (212)
T ss_dssp EEEESSCCHHHHHHHH-HHHTTSSSSEEEEEEESCTTCHHHHHH---HHTTCEEEECCGGGCSSHHHHHHHHHHHHGGGC
T ss_pred EEEEECCcHHHHHHHH-HHHcCCCCceEEEEEeCCCchHHHHHH---HHcCCcEEEeCcccccchhhccHHHHHHHHhcC
Confidence 4566666676655555 444443 45554333 34566665555 45799998875 234445555 5
Q ss_pred ccEEEEcce
Q 008627 523 VTRVFLGAS 531 (559)
Q Consensus 523 VdkVlLGAd 531 (559)
+|.+++-+-
T Consensus 80 ~Dliv~agy 88 (212)
T 1jkx_A 80 PDVVVLAGF 88 (212)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEeCh
Confidence 898887543
No 126
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=40.44 E-value=34 Score=33.13 Aligned_cols=89 Identities=12% Similarity=0.093 Sum_probs=53.6
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceee
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaI 533 (559)
.|..||+.|...+...-++...+.|-. |+|++.....+ ++.|.+.| .++++...--...+..+|.||...+.-
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~--VtVvap~~~~~----l~~l~~~~-~i~~i~~~~~~~dL~~adLVIaAT~d~ 102 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAA--ITVVAPTVSAE----INEWEAKG-QLRVKRKKVGEEDLLNVFFIVVATNDQ 102 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCC--EEEECSSCCHH----HHHHHHTT-SCEEECSCCCGGGSSSCSEEEECCCCT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCE--EEEECCCCCHH----HHHHHHcC-CcEEEECCCCHhHhCCCCEEEECCCCH
Confidence 477899999998888888877777764 55555443322 34455443 345554333333456788887543321
Q ss_pred ecCCceecccchHHHHHHHhhCCCCC
Q 008627 534 LSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 534 laNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
-+| ..|+..|+ .+|||
T Consensus 103 -----~~N----~~I~~~ak-~gi~V 118 (223)
T 3dfz_A 103 -----AVN----KFVKQHIK-NDQLV 118 (223)
T ss_dssp -----HHH----HHHHHHSC-TTCEE
T ss_pred -----HHH----HHHHHHHh-CCCEE
Confidence 222 34666777 78775
No 127
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A*
Probab=40.25 E-value=30 Score=31.62 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=45.3
Q ss_pred cCcHHHHHHHHHHHH-hC--CceEEEEcCCCCCchHH----HHHHHHHhCCCceEEEecchHHHHhccccEEEEc
Q 008627 462 GSSSAVEMILQHAHE-LG--KQFRVVIVDSRPKHEGK----LLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (559)
Q Consensus 462 g~SstV~~iL~~A~e-~G--k~FrViVvESRP~~EG~----~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLG 529 (559)
|+|...+.+|++..+ .| ..|.|.-.-+.++..|. ...+.|.+.||+.....-.--...+.+.|.||.=
T Consensus 16 cRSpmAE~~~~~~~~~~gl~~~~~v~SAGt~~~~~G~~~~~~a~~~l~~~Gid~~~~ar~l~~~~~~~~DlIl~M 90 (161)
T 3jvi_A 16 CRSPAAEAVMKKVIQNHHLTEKYICDSAGTCSYHEGQQADSRMRKVGKSRGYQVDSISRPVVSSDFKNFDYIFAM 90 (161)
T ss_dssp SHHHHHHHHHHHHHHHTTCGGGEEEEEEESCCTTTTCBCCHHHHHHHHHTTCCCCCBCCBCCHHHHHHCSEEEES
T ss_pred hHHHHHHHHHHHHHHHcCCCCcEEEEeeecCCcccCCCCCHHHHHHHHHcCcCCCCeeeECCHHHhcCCCEEEEe
Confidence 678999999998654 44 36888888888876663 5578888999986332211112334567887753
No 128
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=40.23 E-value=58 Score=31.89 Aligned_cols=95 Identities=17% Similarity=0.132 Sum_probs=51.4
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------chHHHHhc--cccE
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EVTR 525 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D--------sAvs~iM~--~Vdk 525 (559)
.+++|.|.+..+..++..+.+.|. +|++. .|.+.|..+...+...|+.+.++.. ..+-..+. ++..
T Consensus 87 ~v~~t~g~t~al~~~~~~~~~~gd--~Vl~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~ 162 (393)
T 1vjo_A 87 TIAVSGTGTAAMEATIANAVEPGD--VVLIG--VAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAI 162 (393)
T ss_dssp EEEESSCHHHHHHHHHHHHCCTTC--EEEEE--ESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSE
T ss_pred EEEEeCchHHHHHHHHHhccCCCC--EEEEE--cCChhHHHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHhhCCceE
Confidence 466666666666666665544333 55555 3666664444445567888777752 22333333 3555
Q ss_pred EEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 526 VlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
|++ ...-...|.++. + ..|+-+|+++|+.
T Consensus 163 v~~-~~~~nptG~~~~-l--~~i~~l~~~~~~~ 191 (393)
T 1vjo_A 163 LAL-VHAETSTGARQP-L--EGVGELCREFGTL 191 (393)
T ss_dssp EEE-ESEETTTTEECC-C--TTHHHHHHHHTCE
T ss_pred EEE-eccCCCcceecc-H--HHHHHHHHHcCCE
Confidence 554 233334455543 2 3466667777764
No 129
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=40.02 E-value=18 Score=35.72 Aligned_cols=66 Identities=21% Similarity=0.210 Sum_probs=45.1
Q ss_pred cCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEccee
Q 008627 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (559)
Q Consensus 453 ~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAda 532 (559)
..+..|..+|+-.-+.+.|.. + ++|+|+|=.|..-|.. ...|..-.++++++|.||+=+.+
T Consensus 114 ~~~~kV~vIG~~p~l~~~l~~-----~-~~v~V~d~~p~~~~~~-------------~~~~~~e~~~l~~~D~v~iTGsT 174 (249)
T 3npg_A 114 DEIKRIAIIGNMPPVVRTLKE-----K-YEVYVFERNMKLWDRD-------------TYSDTLEYHILPEVDGIIASASC 174 (249)
T ss_dssp SCCSEEEEESCCHHHHHHHTT-----T-SEEEEECCSGGGCCSS-------------EECGGGHHHHGGGCSEEEEETTH
T ss_pred cCCCEEEEECCCHHHHHHHhc-----c-CCEEEEECCCcccCCC-------------CCChhHHHhhhccCCEEEEEeee
Confidence 456899999998765443322 3 7999999999763321 12565555689999999887766
Q ss_pred eecCCc
Q 008627 533 VLSNGT 538 (559)
Q Consensus 533 IlaNGs 538 (559)
+. ||+
T Consensus 175 lv-N~T 179 (249)
T 3npg_A 175 IV-NGT 179 (249)
T ss_dssp HH-HTC
T ss_pred ec-cCC
Confidence 55 443
No 130
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=40.01 E-value=81 Score=27.03 Aligned_cols=67 Identities=12% Similarity=0.148 Sum_probs=43.2
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHH-----hccccEEEEcc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI-----IHEVTRVFLGA 530 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~i-----M~~VdkVlLGA 530 (559)
+.|+.+|+...-..+...+.+.| +.|+++|..|. .++.|.+.|+.+.+ -|..-..+ +.++|.||+..
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g--~~v~vid~~~~-----~~~~~~~~g~~~i~-gd~~~~~~l~~a~i~~ad~vi~~~ 79 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASD--IPLVVIETSRT-----RVDELRERGVRAVL-GNAANEEIMQLAHLECAKWLILTI 79 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTT--CCEEEEESCHH-----HHHHHHHTTCEEEE-SCTTSHHHHHHTTGGGCSEEEECC
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCHH-----HHHHHHHcCCCEEE-CCCCCHHHHHhcCcccCCEEEEEC
Confidence 56888898877666777666655 57888887653 35667778887643 34332222 34678887654
No 131
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=40.00 E-value=1.7e+02 Score=28.19 Aligned_cols=96 Identities=14% Similarity=0.285 Sum_probs=53.2
Q ss_pred CCEEEEecCcHHHHHHHHHH-HHhCCceEEEEcCCCCCchHHHH-HHHH-HhCCCceEEEecc----------hHHHHhc
Q 008627 455 GDVLLTYGSSSAVEMILQHA-HELGKQFRVVIVDSRPKHEGKLL-LRRL-VRKGLSCTYTHIN----------AISYIIH 521 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A-~e~Gk~FrViVvESRP~~EG~~L-Ak~L-~~~GI~vTyI~Ds----------Avs~iM~ 521 (559)
..+++|.|.+..+..++..+ .+.| -+|++. .|.+.+... ...+ ...|+.+.++... .+-..+.
T Consensus 77 ~~v~~~~g~t~a~~~~~~~~~~~~g--d~vl~~--~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~ 152 (390)
T 1elu_A 77 NTITITDNVTTGCDIVLWGLDWHQG--DEILLT--DCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLG 152 (390)
T ss_dssp GGEEEESSHHHHHHHHHHHSCCCTT--CEEEEE--TTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCC
T ss_pred HHEEEeCChHHHHHHHHhCCCCCCC--CEEEEe--cCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcC
Confidence 36777877777776666655 3333 356654 466766653 2333 3458888887642 2222222
Q ss_pred -cccEEEEcceeeecCCceecccchHHHHHHHh----hCCCC
Q 008627 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY----GFHIP 558 (559)
Q Consensus 522 -~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk----~~~VP 558 (559)
++..|++ ...-...|.++. -..|+-+|+ .+++.
T Consensus 153 ~~~~~v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~ 190 (390)
T 1elu_A 153 PKTRLVIL-SHLLWNTGQVLP---LAEIMAVCRRHQGNYPVR 190 (390)
T ss_dssp TTEEEEEE-ESBCTTTCCBCC---HHHHHHHHHHCCSSSCCE
T ss_pred CCceEEEE-eccccCCceecC---HHHHHHHHhhhhhhcCcE
Confidence 2334433 333334566665 345666777 78775
No 132
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=39.86 E-value=1e+02 Score=30.33 Aligned_cols=99 Identities=11% Similarity=0.079 Sum_probs=53.3
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-----------chHHHHhc-
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-----------NAISYIIH- 521 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D-----------sAvs~iM~- 521 (559)
...+++|-|.+..+..++....+.| -+|++. .|.+.|...+ +...|+.+..+.. .++-..+.
T Consensus 89 ~~~v~~t~g~~~a~~~~~~~l~~~g--d~vl~~--~p~~~~~~~~--~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~ 162 (399)
T 1c7n_A 89 TDWIINTAGVVPAVFNAVREFTKPG--DGVIII--TPVYYPFFMA--IKNQERKIIECELLEKDGYYTIDFQKLEKLSKD 162 (399)
T ss_dssp GGGEEEESSHHHHHHHHHHHHCCTT--CEEEEC--SSCCTHHHHH--HHTTTCEEEECCCEEETTEEECCHHHHHHHHTC
T ss_pred hhhEEEcCCHHHHHHHHHHHhcCCC--CEEEEc--CCCcHhHHHH--HHHcCCEEEecccccCCCCEEEcHHHHHHHhcc
Confidence 3467777777777766666543333 355553 4677765433 3345776665542 22333343
Q ss_pred -cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 522 -~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
++..|++ ...-...|.++..-=-..|+-+|++|++.|
T Consensus 163 ~~~~~v~~-~~~~nptG~~~~~~~l~~i~~~~~~~~~~l 200 (399)
T 1c7n_A 163 KNNKALLF-CSPHNPVGRVWKKDELQKIKDIVLKSDLML 200 (399)
T ss_dssp TTEEEEEE-ESSBTTTTBCCCHHHHHHHHHHHHHSSCEE
T ss_pred CCCcEEEE-cCCCCCCCcCcCHHHHHHHHHHHHHcCCEE
Confidence 3445554 333333455554433445667788888753
No 133
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=39.83 E-value=1.5e+02 Score=24.61 Aligned_cols=57 Identities=14% Similarity=0.025 Sum_probs=29.5
Q ss_pred HHHHhCCC-ceEEEe--cchHHH----Hh--ccccEEEEcceeeecCCceec-ccchHHHHHHHhhCCCCC
Q 008627 499 RRLVRKGL-SCTYTH--INAISY----II--HEVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 499 k~L~~~GI-~vTyI~--DsAvs~----iM--~~VdkVlLGAdaIlaNGsVvN-KvGT~~IALaAk~~~VPV 559 (559)
+.+.+.|+ ++++.. ...... +. .++|.|++|++.-- .+-. -.|+-.-.++ ++.++||
T Consensus 76 ~~~~~~g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~~---~~~~~~~Gs~~~~vl-~~~~~pV 142 (146)
T 3s3t_A 76 QFVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTN---SPHRVAVGSTTSYVV-DHAPCNV 142 (146)
T ss_dssp HHHTTSSCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCSS---CTTTCSSCHHHHHHH-HHCSSEE
T ss_pred HHHHhcCCcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCCC---CcceEEEcchHHHHh-ccCCCCE
Confidence 34445688 766543 222222 33 26999999997532 2222 2455444443 3444554
No 134
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=39.59 E-value=1.6e+02 Score=28.75 Aligned_cols=101 Identities=14% Similarity=0.048 Sum_probs=48.7
Q ss_pred CCCEEE--EecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---c-------hHHHHhc
Q 008627 454 DGDVLL--TYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---N-------AISYIIH 521 (559)
Q Consensus 454 dGdvIL--T~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D---s-------Avs~iM~ 521 (559)
..++++ |.|.+..+..++..+..-...-+|++. .|.+.|...+ +...|+++..+.. . .+-..+.
T Consensus 92 ~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~--~p~y~~~~~~--~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~ 167 (396)
T 2q7w_A 92 DKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVS--NPSWPNHKSV--FNSAGLEVREYAYYDAENHTLDFDALINSLN 167 (396)
T ss_dssp TTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEE--ESCCTHHHHH--HHHTTCEEEEEECEETTTTEECHHHHHHHHT
T ss_pred cccEEEEecccchhhHHHHHHHHHHhCCCCEEEEc--CCCchhHHHH--HHHcCCceEEEecccCCCCCcCHHHHHHHHH
Confidence 345555 666666666555433211122245554 3666665432 3346777766653 1 2333333
Q ss_pred c---ccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 522 E---VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 522 ~---VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
+ -+++++=..---..|.++..-=-..|+-+|++|++.
T Consensus 168 ~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~ 207 (396)
T 2q7w_A 168 EAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWL 207 (396)
T ss_dssp TCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCE
T ss_pred hCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 2 244444333333345544432233466677777764
No 135
>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}
Probab=39.54 E-value=76 Score=31.49 Aligned_cols=44 Identities=25% Similarity=0.404 Sum_probs=29.0
Q ss_pred CCCEEEEecCcHHH-HHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHH
Q 008627 454 DGDVLLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRL 501 (559)
Q Consensus 454 dGdvILT~g~SstV-~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L 501 (559)
.|++||.++-++.| ..++..|+..| .+||++++.+. -.+++++|
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~G--a~Vi~~~~~~~--~~~~~~~l 194 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYG--LRVITTASRNE--TIEWTKKM 194 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEECCSHH--HHHHHHHH
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcC--CEEEEEeCCHH--HHHHHHhc
Confidence 79999999655444 55666666655 48999987653 34445543
No 136
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=39.41 E-value=1.2e+02 Score=29.42 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=52.0
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecch---H---HHHh----cccc
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA---I---SYII----HEVT 524 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsA---v---s~iM----~~Vd 524 (559)
..+++|-|.+..+..++..+ .| -+|++. .|.+.|...+ +...|+++..+.... + ..++ .++.
T Consensus 77 ~~v~~~~g~~~al~~~~~~~--~g--d~vl~~--~p~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~ 148 (364)
T 1lc5_A 77 SWILAGNGETESIFTVASGL--KP--RRAMIV--TPGFAEYGRA--LAQSGCEIRRWSLREADGWQLTDAILEALTPDLD 148 (364)
T ss_dssp GGEEEESSHHHHHHHHHHHH--CC--SEEEEE--ESCCTHHHHH--HHHTTCEEEEEECCGGGTTCCCTTHHHHCCTTCC
T ss_pred HHEEECCCHHHHHHHHHHHc--CC--CeEEEe--CCCcHHHHHH--HHHcCCeEEEEeCCcccccchhHHHHHhccCCCC
Confidence 46777777777776666655 44 356554 3666665432 344688887776321 1 1122 2344
Q ss_pred EEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 525 kVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.|++ .+--...|.++..-=-..|+-+|++||+.|
T Consensus 149 ~v~i-~~p~nptG~~~~~~~l~~i~~~~~~~~~~l 182 (364)
T 1lc5_A 149 CLFL-CTPNNPTGLLPERPLLQAIADRCKSLNINL 182 (364)
T ss_dssp EEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEE
T ss_pred EEEE-eCCCCCCCCCCCHHHHHHHHHHhhhcCcEE
Confidence 5554 222223455544322345666778887753
No 137
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Probab=39.37 E-value=2.2e+02 Score=30.89 Aligned_cols=33 Identities=15% Similarity=0.048 Sum_probs=26.1
Q ss_pred cccEEEEcceeeecCCceeccc--ch---HHHHHHHhh
Q 008627 522 EVTRVFLGASSVLSNGTVCSRV--GT---ACVAMVAYG 554 (559)
Q Consensus 522 ~VdkVlLGAdaIlaNGsVvNKv--GT---~~IALaAk~ 554 (559)
.+|..|+-|...-.+|.+.-.. +. ..+|++|+.
T Consensus 180 ~~DVAlI~a~~aD~~Gn~~~~~~~~~~~~~~~a~aAk~ 217 (531)
T 2ahu_A 180 APDIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHN 217 (531)
T ss_dssp CCSEEEEECSEEETTCCEECTTSSCCTTHHHHHHHHHT
T ss_pred CCeEEEEEcccCCCCceEEEcCcccccCHHHHHHhHhh
Confidence 5899999999999999977653 22 367888883
No 138
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=39.07 E-value=1.7e+02 Score=28.10 Aligned_cols=98 Identities=14% Similarity=0.114 Sum_probs=53.2
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHh-----------CCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc--------
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHEL-----------GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------- 514 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~-----------Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds-------- 514 (559)
..++++|.|-+..+..+|..+... +..-+|++.+ |.+.+... .+...|+++.++...
T Consensus 86 ~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~--~~~~~~~~--~~~~~g~~~~~v~~~~~~~~d~~ 161 (397)
T 3f9t_A 86 DAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPI--TAHFSFEK--GREMMDLEYIYAPIKEDYTIDEK 161 (397)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEET--TCCTHHHH--HHHHHTCEEEEECBCTTSSBCHH
T ss_pred CCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECC--cchhHHHH--HHHHcCceeEEEeeCCCCcCCHH
Confidence 445677777777776666665543 1233566543 45555332 233348888888632
Q ss_pred hHHHHhcc--ccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 515 AISYIIHE--VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 515 Avs~iM~~--VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.+-..+.+ ..+|++- ..-...|.+.. -..|+-+|++||+.|
T Consensus 162 ~l~~~i~~~~~~~v~~~-~~~nptG~~~~---l~~i~~l~~~~~~~l 204 (397)
T 3f9t_A 162 FVKDAVEDYDVDGIIGI-AGTTELGTIDN---IEELSKIAKENNIYI 204 (397)
T ss_dssp HHHHHHHHSCCCEEEEE-BSCTTTCCBCC---HHHHHHHHHHHTCEE
T ss_pred HHHHHHhhcCCeEEEEE-CCCCCCCCCCC---HHHHHHHHHHhCCeE
Confidence 33333433 4444433 23344555533 345777888888753
No 139
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=38.60 E-value=1.3e+02 Score=29.21 Aligned_cols=97 Identities=13% Similarity=0.044 Sum_probs=54.2
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------chHHHHhc---cc
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH---EV 523 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D--------sAvs~iM~---~V 523 (559)
..+++|.|.+..+..++..+.+.| -+|++.+ |.+-|..+...+...|+.+.++.. ..+-..++ ++
T Consensus 60 ~~v~~t~g~t~a~~~~~~~~~~~g--d~Vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~ 135 (392)
T 2z9v_A 60 KPVILHGEPVLGLEAAAASLISPD--DVVLNLA--SGVYGKGFGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEI 135 (392)
T ss_dssp CCEEESSCTHHHHHHHHHHHCCTT--CCEEEEE--SSHHHHHHHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTC
T ss_pred CEEEEeCCchHHHHHHHHHhcCCC--CEEEEec--CCcccHHHHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCC
Confidence 467777777777666666554333 3455553 445454333334456888877752 23344442 44
Q ss_pred cEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 524 dkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
..|++ .+.-...|.++. -..|+-+|++||+.+
T Consensus 136 ~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~l 167 (392)
T 2z9v_A 136 TVVSV-CHHDTPSGTINP---IDAIGALVSAHGAYL 167 (392)
T ss_dssp CEEEE-ESEEGGGTEECC---HHHHHHHHHHTTCEE
T ss_pred cEEEE-eccCCCCceecc---HHHHHHHHHHcCCeE
Confidence 45544 333334465554 346777888888753
No 140
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=38.55 E-value=89 Score=31.52 Aligned_cols=101 Identities=19% Similarity=0.273 Sum_probs=56.3
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc-------hHHHH---hc
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------AISYI---IH 521 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds-------Avs~i---M~ 521 (559)
+...++++|.|.+..+..++..+.+.|. +|++. .|.+.+... .+...|+++.++... -+..+ +.
T Consensus 116 ~~~~~v~~t~g~t~al~~~~~~l~~~gd--~vl~~--~p~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~ 189 (427)
T 3dyd_A 116 LEAKDVILTSGCSQAIDLCLAVLANPGQ--NILVP--RPGFSLYKT--LAESMGIEVKLYNLLPEKSWEIDLKQLEYLID 189 (427)
T ss_dssp CCGGGEEEESSHHHHHHHHHHHHCCTTC--EEEEE--ESCCTHHHH--HHHHTTCEEEEEEEEGGGTTEECHHHHHSSCC
T ss_pred CChHHEEEecCcHHHHHHHHHHhcCCCC--EEEEc--CCCchhHHH--HHHHcCCEEEEEecccccCCCCCHHHHHHHhc
Confidence 3455788888888877777766544333 56555 366666543 344578887776532 12222 22
Q ss_pred -cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 522 -~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+...|++ .+.--..|.++..---..|+-+|+++++.+
T Consensus 190 ~~~~~v~i-~~p~nptG~~~~~~~l~~i~~~~~~~~~~~ 227 (427)
T 3dyd_A 190 EKTACLIV-NNPSNPCGSVFSKRHLQKILAVAARQCVPI 227 (427)
T ss_dssp TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCCE
T ss_pred cCCCEEEE-ECCCCCCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 2223332 222223455555444566778889988764
No 141
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=38.24 E-value=18 Score=29.81 Aligned_cols=55 Identities=20% Similarity=0.152 Sum_probs=34.6
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCC-CCchHHHHHHHHHhC---CCceEEEec
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR-PKHEGKLLLRRLVRK---GLSCTYTHI 513 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESR-P~~EG~~LAk~L~~~---GI~vTyI~D 513 (559)
|-.|.+....... +....+ ...+.++++|-. |...|.++++.|.+. .+++.+++.
T Consensus 31 g~~v~~~~~~~~a---~~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~~s~ 89 (136)
T 3hdv_A 31 GIDAVGADGAEEA---RLYLHY-QKRIGLMITDLRMQPESGLDLIRTIRASERAALSIIVVSG 89 (136)
T ss_dssp TCCEEEESSHHHH---HHHHHH-CTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEEEES
T ss_pred CceEEEeCCHHHH---HHHHHh-CCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEEEeC
Confidence 3345554444333 332222 345899999855 888999999999976 355666554
No 142
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=38.23 E-value=2.4e+02 Score=25.90 Aligned_cols=36 Identities=6% Similarity=-0.143 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhCCCceEEEecchHHHHhccccEEEE
Q 008627 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (559)
Q Consensus 493 EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlL 528 (559)
+=.++++.+.+.|+++..|+++.-+.+.+.+|.+|.
T Consensus 146 ~~i~~~~~ak~~G~~vIaIT~~~~s~La~~aD~~l~ 181 (212)
T 2i2w_A 146 NVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIR 181 (212)
T ss_dssp HHHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEE
Confidence 445668888889999999999877777788998886
No 143
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=38.17 E-value=1e+02 Score=30.89 Aligned_cols=101 Identities=14% Similarity=0.170 Sum_probs=51.3
Q ss_pred cCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-------chHHHHhc----
Q 008627 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-------NAISYIIH---- 521 (559)
Q Consensus 453 ~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D-------sAvs~iM~---- 521 (559)
....+++|-|.+..+..++....+.| -+|++.+ |.+.|... .+...|+.+..+.. .++-..+.
T Consensus 108 ~~~~v~~t~G~~~al~~~~~~l~~~g--d~Vl~~~--p~y~~~~~--~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~ 181 (425)
T 1vp4_A 108 DEDNLIFTVGSQQALDLIGKLFLDDE--SYCVLDD--PAYLGAIN--AFRQYLANFVVVPLEDDGMDLNVLERKLSEFDK 181 (425)
T ss_dssp CGGGEEEEEHHHHHHHHHHHHHCCTT--CEEEEEE--SCCHHHHH--HHHTTTCEEEEEEEETTEECHHHHHHHHHHHHH
T ss_pred CcccEEEeccHHHHHHHHHHHhCCCC--CEEEEeC--CCcHHHHH--HHHHcCCEEEEeccCCCCCCHHHHHHHHHhhhh
Confidence 34467888877777766666543333 3555543 56666533 23346777776642 22333333
Q ss_pred -----cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 522 -----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 522 -----~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
++..|++=...-...|.++..-=-..|+-+|++|++.+
T Consensus 182 ~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~l 224 (425)
T 1vp4_A 182 NGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFI 224 (425)
T ss_dssp TTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred cccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence 23333321111122354443322235667788888753
No 144
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Probab=38.01 E-value=84 Score=31.34 Aligned_cols=52 Identities=10% Similarity=0.095 Sum_probs=34.6
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceE
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCT 509 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vT 509 (559)
.++.|++||.+|.+.+=..++..|+..|- +||+++..+.. .+++++| |.+..
T Consensus 176 ~~~~g~~VlV~GaG~vG~~~~qlak~~Ga--~Vi~~~~~~~~--~~~~~~l---Ga~~v 227 (360)
T 1piw_A 176 GCGPGKKVGIVGLGGIGSMGTLISKAMGA--ETYVISRSSRK--REDAMKM---GADHY 227 (360)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHHTC--EEEEEESSSTT--HHHHHHH---TCSEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEcCCHHH--HHHHHHc---CCCEE
Confidence 47789999999995444556666766664 69999876553 3455543 55443
No 145
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=37.68 E-value=1.7e+02 Score=28.06 Aligned_cols=95 Identities=16% Similarity=0.105 Sum_probs=52.2
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe--cc--------hHHHHhc----
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--IN--------AISYIIH---- 521 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~--Ds--------Avs~iM~---- 521 (559)
.+++|-|.+..+..++..+.+.| -+|++. .|.+.+...+ +...|+.+.++. .. .+-..+.
T Consensus 71 ~v~~~~g~t~a~~~~~~~~~~~g--d~vl~~--~~~~~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 144 (371)
T 2e7j_A 71 VARVTNGAREAKFAVMHSLAKKD--AWVVMD--ENCHYSSYVA--AERAGLNIALVPKTDYPDYAITPENFAQTIEETKK 144 (371)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEE--TTCCHHHHHH--HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTT
T ss_pred EEEEeCChHHHHHHHHHHHhCCC--CEEEEc--cCcchHHHHH--HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcc
Confidence 55666555666666665553333 355554 3566665544 556788888886 22 3333443
Q ss_pred -cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 522 -~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.-.++++=...-...|.++.- ..|+-+|++||++|
T Consensus 145 ~~~~~~v~~~~~~nptG~~~~~---~~i~~~~~~~~~~l 180 (371)
T 2e7j_A 145 RGEVVLALITYPDGNYGNLPDV---KKIAKVCSEYDVPL 180 (371)
T ss_dssp TSCEEEEEEESSCTTTCCCCCH---HHHHHHHHTTTCCE
T ss_pred cCCeEEEEEECCCCCCcccCCH---HHHHHHHHHcCCeE
Confidence 112333323222344655542 67777888888864
No 146
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=37.59 E-value=63 Score=31.33 Aligned_cols=90 Identities=20% Similarity=0.120 Sum_probs=51.6
Q ss_pred CCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe---cchHHHHhccccEEEEcc
Q 008627 455 GDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH---INAISYIIHEVTRVFLGA 530 (559)
Q Consensus 455 GdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~---DsAvs~iM~~VdkVlLGA 530 (559)
+.+||..|-++-|- .++....++| ++|++++-++.. .++.+.... ...+..++..+|.||--|
T Consensus 19 ~~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~-----------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A 85 (347)
T 4id9_A 19 SHMILVTGSAGRVGRAVVAALRTQG--RTVRGFDLRPSG-----------TGGEEVVGSLEDGQALSDAIMGVSAVLHLG 85 (347)
T ss_dssp --CEEEETTTSHHHHHHHHHHHHTT--CCEEEEESSCCS-----------SCCSEEESCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCC--CEEEEEeCCCCC-----------CCccEEecCcCCHHHHHHHHhCCCEEEECC
Confidence 46788888887774 4444445545 677777655432 344433222 134556677788877655
Q ss_pred eeeecCCc------eecccchHHHHHHHhhCCC
Q 008627 531 SSVLSNGT------VCSRVGTACVAMVAYGFHI 557 (559)
Q Consensus 531 daIlaNGs------VvNKvGT~~IALaAk~~~V 557 (559)
-....+.. -+|-.||..+.-+|+..++
T Consensus 86 ~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~ 118 (347)
T 4id9_A 86 AFMSWAPADRDRMFAVNVEGTRRLLDAASAAGV 118 (347)
T ss_dssp CCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTC
T ss_pred cccCcchhhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 32221111 1356788888888888775
No 147
>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A
Probab=37.57 E-value=71 Score=30.36 Aligned_cols=99 Identities=14% Similarity=0.178 Sum_probs=55.9
Q ss_pred CCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe---cchHHHHhccccEEEEcc
Q 008627 455 GDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH---INAISYIIHEVTRVFLGA 530 (559)
Q Consensus 455 GdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~---DsAvs~iM~~VdkVlLGA 530 (559)
+.+||..|-++.+- .++..+.++|. ++|+++.-.|... -+..|...|+.+.... ...+..++..+|.||.-|
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~~V~~~~R~~~~~---~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a 80 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGT-FKVRVVTRNPRKK---AAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVT 80 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCS-SEEEEEESCTTSH---HHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCC-ceEEEEEcCCCCH---HHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeC
Confidence 46799999987774 44444455552 6777776554432 1345666676554322 145666778888888755
Q ss_pred eeeecCCceecccchHHHHHHHhhCCC
Q 008627 531 SSVLSNGTVCSRVGTACVAMVAYGFHI 557 (559)
Q Consensus 531 daIlaNGsVvNKvGT~~IALaAk~~~V 557 (559)
...-....-.|-.++..+.-+|+..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~aa~~~gv 107 (299)
T 2wm3_A 81 NYWESCSQEQEVKQGKLLADLARRLGL 107 (299)
T ss_dssp CHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCccccchHHHHHHHHHHHHHHHcCC
Confidence 321111111233467777667766665
No 148
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=37.56 E-value=48 Score=33.01 Aligned_cols=68 Identities=15% Similarity=0.123 Sum_probs=43.3
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---ch--HHHHhccccEEEEcc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NA--ISYIIHEVTRVFLGA 530 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D---sA--vs~iM~~VdkVlLGA 530 (559)
.+||..|....-..+...|++.| ++|+++|..|..-+..++ +-.|+.+ .. +-.+.+++|.|+.|.
T Consensus 2 K~I~ilGgg~~g~~~~~~Ak~~G--~~vv~vd~~~~~~~~~~a--------D~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 71 (363)
T 4ffl_A 2 KTICLVGGKLQGFEAAYLSKKAG--MKVVLVDKNPQALIRNYA--------DEFYCFDVIKEPEKLLELSKRVDAVLPVN 71 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCTTCTTTTTS--------SEEEECCTTTCHHHHHHHHTSSSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCCCChhHhhC--------CEEEECCCCcCHHHHHHHhcCCCEEEECC
Confidence 36888887766667777887765 789999988876544332 2223322 12 223345799998887
Q ss_pred eee
Q 008627 531 SSV 533 (559)
Q Consensus 531 daI 533 (559)
+-+
T Consensus 72 ~~~ 74 (363)
T 4ffl_A 72 ENL 74 (363)
T ss_dssp CCH
T ss_pred CCh
Confidence 644
No 149
>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}
Probab=37.46 E-value=94 Score=30.78 Aligned_cols=47 Identities=21% Similarity=0.472 Sum_probs=32.3
Q ss_pred cccCCCEEEEecCcHHH-HHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHH
Q 008627 451 KIRDGDVLLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRL 501 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV-~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L 501 (559)
.+..|++||.+|.++.| ..++..|+..| .+||+++..+.. .+++++|
T Consensus 156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~G--a~Vi~~~~~~~~--~~~~~~~ 203 (342)
T 4eye_A 156 QLRAGETVLVLGAAGGIGTAAIQIAKGMG--AKVIAVVNRTAA--TEFVKSV 203 (342)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSGGG--HHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEeCCHHH--HHHHHhc
Confidence 46789999999996655 45555566555 489999876543 3455554
No 150
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=37.27 E-value=1.3e+02 Score=29.02 Aligned_cols=96 Identities=8% Similarity=0.012 Sum_probs=53.5
Q ss_pred CCEEEEecCcHHHHHHHHHHH---HhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---------chHHHHhc-
Q 008627 455 GDVLLTYGSSSAVEMILQHAH---ELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---------NAISYIIH- 521 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~---e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D---------sAvs~iM~- 521 (559)
..+++|-|.+..+..++..+. +.| -+|++.++ |.+.+ .+...+...|+++.++.. ..+-..+.
T Consensus 60 ~~v~~~~g~t~al~~~~~~~~~~~~~g--d~vlv~~~-~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~ 135 (385)
T 2bkw_A 60 QPFVLAGSGTLGWDIFASNFILSKAPN--KNVLVVST-GTFSD-RFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQ 135 (385)
T ss_dssp EEEEEESCTTHHHHHHHHHHSCTTCSC--CEEEEECS-SHHHH-HHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH
T ss_pred ceEEEcCchHHHHHHHHHHHhccCCCC--CeEEEEcC-CcchH-HHHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhc
Confidence 457778777777776666553 333 36777654 22222 223445567888887753 22333343
Q ss_pred -cccEEEEcceeeecCCceecccchHHHHHHHhhC--CCC
Q 008627 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF--HIP 558 (559)
Q Consensus 522 -~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~--~VP 558 (559)
++..|++ .+.-...|.++. -..|+-+|++| |+.
T Consensus 136 ~~~~~v~~-~~~~nptG~~~~---l~~i~~~~~~~~~~~~ 171 (385)
T 2bkw_A 136 NSYGAVTV-THVDTSTAVLSD---LKAISQAIKQTSPETF 171 (385)
T ss_dssp SCCSEEEE-ESEETTTTEECC---HHHHHHHHHHHCTTSE
T ss_pred CCCCEEEE-EccCCCcCeEcC---HHHHHHHHHhhCCCCE
Confidence 3555554 233333465554 34677778887 765
No 151
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=37.23 E-value=25 Score=37.66 Aligned_cols=102 Identities=12% Similarity=0.094 Sum_probs=43.7
Q ss_pred HHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHH--------
Q 008627 446 KHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS-------- 517 (559)
Q Consensus 446 ~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs-------- 517 (559)
-.....|+.||+|+.+|....+..+..........-+|+|+-. +.-|..+++.|.+.|++|++|..+.-.
T Consensus 314 p~~~~~l~~GD~L~v~g~~~~l~~~~~~~~~~~~~~~viIiG~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i 391 (565)
T 4gx0_A 314 PQRETVLTEQSLLVLAGTKSQLAALEYLIGEAPEDELIFIIGH--GRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVV 391 (565)
T ss_dssp ---------------------------------CCCCEEEECC--SHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEE
T ss_pred CCCCcEeCCCCEEEEEeCHHHHHHHHHHhcCCCCCCCEEEECC--CHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEE
Confidence 3445668889999999998877665554322212256777755 566889999999999999999743211
Q ss_pred ------------HHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 518 ------------YIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 518 ------------~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
.-+.++|.|++..+. .-=+..+++.||..|..
T Consensus 392 ~gD~t~~~~L~~agi~~ad~vi~~~~~---------d~~ni~~~~~ak~l~~~ 435 (565)
T 4gx0_A 392 YGDATVGQTLRQAGIDRASGIIVTTND---------DSTNIFLTLACRHLHSH 435 (565)
T ss_dssp ESCSSSSTHHHHHTTTSCSEEEECCSC---------HHHHHHHHHHHHHHCSS
T ss_pred EeCCCCHHHHHhcCccccCEEEEECCC---------chHHHHHHHHHHHHCCC
Confidence 112355666554432 23346677788877653
No 152
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=37.21 E-value=55 Score=31.52 Aligned_cols=69 Identities=19% Similarity=0.111 Sum_probs=41.5
Q ss_pred EEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe----------cchHHHHhc--cccE
Q 008627 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH----------INAISYIIH--EVTR 525 (559)
Q Consensus 458 ILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~----------DsAvs~iM~--~Vdk 525 (559)
||.-|+.+..+.+|... ..+..++|..+=|.|...+.+.|+ ++||++.++. |..+-..++ ++|.
T Consensus 17 vl~SG~gsnl~all~~~-~~~~~~eI~~Vis~~~a~~~~~A~---~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dl 92 (215)
T 3da8_A 17 VLASGTGSLLRSLLDAA-VGDYPARVVAVGVDRECRAAEIAA---EASVPVFTVRLADHPSRDAWDVAITAATAAHEPDL 92 (215)
T ss_dssp EEESSCCHHHHHHHHHS-STTCSEEEEEEEESSCCHHHHHHH---HTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSE
T ss_pred EEEeCChHHHHHHHHHH-hccCCCeEEEEEeCCchHHHHHHH---HcCCCEEEeCcccccchhhhhHHHHHHHHhhCCCE
Confidence 33336666666666543 323445766665655555544444 4799999885 234555555 5898
Q ss_pred EEEcc
Q 008627 526 VFLGA 530 (559)
Q Consensus 526 VlLGA 530 (559)
+++-+
T Consensus 93 ivlag 97 (215)
T 3da8_A 93 VVSAG 97 (215)
T ss_dssp EEEEE
T ss_pred EEEcC
Confidence 88754
No 153
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=37.14 E-value=1.5e+02 Score=28.99 Aligned_cols=99 Identities=15% Similarity=0.082 Sum_probs=48.0
Q ss_pred CCCEEE--EecCcHHHHHHHHHHHH--hCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec----------chHHHH
Q 008627 454 DGDVLL--TYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYI 519 (559)
Q Consensus 454 dGdvIL--T~g~SstV~~iL~~A~e--~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D----------sAvs~i 519 (559)
...+++ |.|-+..+..++..+.. .|. +|++. .|.+.|...+ +...|..+..+.. .++-..
T Consensus 89 ~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd--~vl~~--~p~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~d~~~l~~~ 162 (394)
T 2ay1_A 89 SETTATLATVGGTGALRQALELARMANPDL--RVFVS--DPTWPNHVSI--MNFMGLPVQTYRYFDAETRGVDFEGMKAD 162 (394)
T ss_dssp GGGEEEEEEEHHHHHHHHHHHHHHHHCTTC--CEEEE--ESCCHHHHHH--HHHHTCCEEEEECEETTTTEECHHHHHHH
T ss_pred cccEEEEecCCchhHHHHHHHHHHhcCCCC--EEEEc--CCCChhHHHH--HHHcCCceEEEecccccCCccCHHHHHHH
Confidence 345565 77777666665554433 333 45554 3666665432 2334676666643 123333
Q ss_pred hcc---ccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 520 IHE---VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 520 M~~---VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
+.+ .+++++=...--..|.++..-=-..|+-+|++|++.
T Consensus 163 l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~ 204 (394)
T 2ay1_A 163 LAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGAL 204 (394)
T ss_dssp HHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCE
T ss_pred HHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 332 245444333333344444332222455667777664
No 154
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural GE PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Probab=37.00 E-value=75 Score=30.98 Aligned_cols=101 Identities=16% Similarity=0.186 Sum_probs=54.7
Q ss_pred HHHHHHHhcccCCCEEEEec-CcHHHHHHHHHHHHhC--C-ceEEEEcC-CC---CCchHHHHHHHHHhC-CCceEEEec
Q 008627 443 VIVKHAVTKIRDGDVLLTYG-SSSAVEMILQHAHELG--K-QFRVVIVD-SR---PKHEGKLLLRRLVRK-GLSCTYTHI 513 (559)
Q Consensus 443 ~Ia~~Aa~~I~dGdvILT~g-~SstV~~iL~~A~e~G--k-~FrViVvE-SR---P~~EG~~LAk~L~~~-GI~vTyI~D 513 (559)
..+++..+.|++++ ||-++ +.+|+..+..+..+.. + ..+|+-++ +- |...-..|.+.|.++ |+++.++..
T Consensus 46 ~aA~~l~~~l~~~~-viGla~~G~T~~~~~~~l~~~~~~~~~v~~v~L~ggl~~~~~~~~~~~~~~la~~~~~~~~~l~~ 124 (264)
T 2r5f_A 46 AAAHYLETSLSAQD-HIGISSWSSTIRAMVSHMHPQPGKQSAQEVVQLLGGVGNKGAFEATLLTQRLATLLNCPAFLLPS 124 (264)
T ss_dssp HHHHHHHHHCCTTC-EEEECTTCHHHHHHHHTCCC--CCCCCSEEEECEECCC--CHHHHHHHHHHHHHHHTSCEECCCC
T ss_pred HHHHHHHHhCCCCC-EEEECcchHHHHHHHHhhccccCCCCCcEEEECCCCCCCccccCHHHHHHHHHHHhCCeeEEeeC
Confidence 34445555677776 46667 9999998888764322 3 45666544 22 222334567777765 777654432
Q ss_pred ch----------------HHHHh---ccccEEEEcceeeecCCceecccch
Q 008627 514 NA----------------ISYII---HEVTRVFLGASSVLSNGTVCSRVGT 545 (559)
Q Consensus 514 sA----------------vs~iM---~~VdkVlLGAdaIlaNGsVvNKvGT 545 (559)
-. +..++ .++|.+|+|-=...+||.++| -|+
T Consensus 125 P~~~~~~~~~~~~~~~~~~~~~l~~~~~~Di~l~GIG~~~~~~~i~~-~g~ 174 (264)
T 2r5f_A 125 QSIEQSVESKQRIVEMEEVKEVLHRFDSITLAIVGIGELEPSQLLRN-SGN 174 (264)
T ss_dssp C----------CCHHHHHHHHHHHHTTTCCEEEECCEECC-----------
T ss_pred CcccCCHHHHHHHHcChHHHHHHHHHhcCCEEEEecCCCCCCccHhh-cCC
Confidence 11 22222 369999999988777898876 574
No 155
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A
Probab=36.76 E-value=34 Score=31.10 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=45.3
Q ss_pred cCcHHHHHHHHHHHH-hC--CceEEEEcCCCCCchHH----HHHHHHHhCCCceEEEecchH-HHHhccccEEEEc
Q 008627 462 GSSSAVEMILQHAHE-LG--KQFRVVIVDSRPKHEGK----LLLRRLVRKGLSCTYTHINAI-SYIIHEVTRVFLG 529 (559)
Q Consensus 462 g~SstV~~iL~~A~e-~G--k~FrViVvESRP~~EG~----~LAk~L~~~GI~vTyI~DsAv-s~iM~~VdkVlLG 529 (559)
|+|...+.+|++..+ .| ..|.|.=.-+.++..|. ...+.|.+.||++. ..--.+ ...+.+ |.||.=
T Consensus 16 cRSpmAEal~~~~~~~~gl~~~~~v~SAGt~~~~~G~~~~p~a~~~l~~~Gid~s-~~ar~l~~~~~~~-DlIi~M 89 (163)
T 1u2p_A 16 CRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGNWHVGSCADERAAGVLRAHGYPTD-HRAAQVGTEHLAA-DLLVAL 89 (163)
T ss_dssp SHHHHHHHHHHHHHHHTTCTTTEEEEEEESSCTTTTCCCCHHHHHHHHHTTCCCC-CCCCBCCHHHHTS-SEEEES
T ss_pred hHHHHHHHHHHHHHHHCCCCCcEEEEecccCCCcCCCCCCHHHHHHHHHcCcCCC-ceeeECChhhccC-CEEEEe
Confidence 678899999998654 33 35888888888866553 45788889999987 322222 234557 888764
No 156
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=36.73 E-value=1.7e+02 Score=29.24 Aligned_cols=97 Identities=16% Similarity=0.099 Sum_probs=50.4
Q ss_pred CEEEEecCcHHHHHHHH--HHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec----------chHHHHhc--
Q 008627 456 DVLLTYGSSSAVEMILQ--HAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH-- 521 (559)
Q Consensus 456 dvILT~g~SstV~~iL~--~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D----------sAvs~iM~-- 521 (559)
.+++|.|.+..+..+++ .....|. +|+|.+ |.+.+... .+...|..+.++.. ..+-..+.
T Consensus 119 ~i~~t~G~t~al~~~~~~~~~~~~gd--~Vlv~~--p~~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 192 (420)
T 4f4e_A 119 VTAQALGGTGALKIGADFLRTLNPKA--KVAISD--PSWENHRA--LFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGY 192 (420)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHCTTC--CEEEEE--SCCHHHHH--HHHHTTCCEEEEECEETTTTEECHHHHHHHHTTC
T ss_pred EEEECCccHHHHHHHHHHHHHhCCCC--EEEEeC--CCcHhHHH--HHHHcCCeEEEeeeeccccCccCHHHHHHHHHhC
Confidence 57778887777766633 2233332 455543 66666532 33346777776653 12333333
Q ss_pred -cccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 522 -~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
.-+++++=...--+.|.+++.---..|+-+|++|++.
T Consensus 193 ~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~ 230 (420)
T 4f4e_A 193 EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLV 230 (420)
T ss_dssp CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCE
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcE
Confidence 2234443332333445555544445677777777764
No 157
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Probab=36.66 E-value=60 Score=34.74 Aligned_cols=94 Identities=18% Similarity=0.233 Sum_probs=57.3
Q ss_pred HHHHhcccCCCEEEEecCcH---HHHHHHHHHHHhCCceEEEEcCC-------CC----------CchHHHHHHHHHhCC
Q 008627 446 KHAVTKIRDGDVLLTYGSSS---AVEMILQHAHELGKQFRVVIVDS-------RP----------KHEGKLLLRRLVRKG 505 (559)
Q Consensus 446 ~~Aa~~I~dGdvILT~g~Ss---tV~~iL~~A~e~Gk~FrViVvES-------RP----------~~EG~~LAk~L~~~G 505 (559)
+.|+++|++|++|-.++..+ .|...|.+..++=+.++|+-.=+ .| ++-|.. .+++.+.|
T Consensus 15 eeA~~~ik~G~~v~~~~~~~~p~~l~~al~~~~~~l~~v~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~r~~i~~G 93 (448)
T 3gk7_A 15 DEAVKSIKSGDRVLFAHCVAEPPVLVEAMVANAAAYKNVTVSHMVTLGKGEYSKPEYKENFTFEGWFTSPS-TRGSIAEG 93 (448)
T ss_dssp HHHGGGCCTTCEEEECSGGGCCHHHHHHHHHTGGGCSSEEEEESSCSSCCGGGSGGGTTTEEEEESSCCTT-THHHHHHT
T ss_pred HHHHHhCCCcCEEEECCCCCCHHHHHHHHHHHHHhhcCeEEEEeeccCCccccChHHhCcEEEecCcCCHH-HHhHHhCC
Confidence 44566999999999987664 33333333222234567765411 11 222222 23444444
Q ss_pred CceEE--EecchHHHHhc----cccEEEEcceeeecCCceec
Q 008627 506 LSCTY--THINAISYIIH----EVTRVFLGASSVLSNGTVCS 541 (559)
Q Consensus 506 I~vTy--I~DsAvs~iM~----~VdkVlLGAdaIlaNGsVvN 541 (559)
.+.| +..+.+..++. .+|.+|+.+...-.+|.+.-
T Consensus 94 -~~~~~p~~ls~~p~~~~~g~~~~DVAli~as~~D~~Gn~s~ 134 (448)
T 3gk7_A 94 -HGQFVPVFFHEVPSLIRKDIFHVDVFMVMVSPPDHNGFCCV 134 (448)
T ss_dssp -SSEECCCCGGGHHHHHHTTTTCCSEEEEEECCCCTTSEEEC
T ss_pred -CeeEECchHHhHHHHHHhCCCCCCEEEEEEecCCCCCcEEe
Confidence 2444 44677777776 48999999999999999863
No 158
>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Probab=36.54 E-value=1.1e+02 Score=27.64 Aligned_cols=98 Identities=10% Similarity=0.045 Sum_probs=57.7
Q ss_pred CCCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe--c-chHHHHhccccEEEEc
Q 008627 454 DGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVFLG 529 (559)
Q Consensus 454 dGdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~--D-sAvs~iM~~VdkVlLG 529 (559)
.+.+||..|-++.+- .+++.+.++|...+|+++.-++. . +..| ..++.+.... | .++..++.++|.||--
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~----~-~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ 76 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQ----G-KEKI-GGEADVFIGDITDADSINPAFQGIDALVIL 76 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHH----H-HHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCC----c-hhhc-CCCeeEEEecCCCHHHHHHHHcCCCEEEEe
Confidence 356788888887774 44455555543578888765431 1 1223 2344433221 1 4677778889999876
Q ss_pred ceeeecCC---------------------ceecccchHHHHHHHhhCCC
Q 008627 530 ASSVLSNG---------------------TVCSRVGTACVAMVAYGFHI 557 (559)
Q Consensus 530 AdaIlaNG---------------------sVvNKvGT~~IALaAk~~~V 557 (559)
|-.....+ .-+|-.|+..+.-+|+..++
T Consensus 77 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~ 125 (253)
T 1xq6_A 77 TSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGV 125 (253)
T ss_dssp CCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTC
T ss_pred ccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCC
Confidence 64321110 02466788888888877654
No 159
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=36.33 E-value=85 Score=30.70 Aligned_cols=103 Identities=17% Similarity=0.089 Sum_probs=58.3
Q ss_pred ccCC-CEEEEecCcHHHHHHHHHHHHhCC---ceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc---------hHHH
Q 008627 452 IRDG-DVLLTYGSSSAVEMILQHAHELGK---QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISY 518 (559)
Q Consensus 452 I~dG-dvILT~g~SstV~~iL~~A~e~Gk---~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds---------Avs~ 518 (559)
+... .+++|-|.+..+..++....+.|. +-+|++. .|.+.+... .+...|+.+.++... ++-.
T Consensus 88 ~~~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~--~p~~~~~~~--~~~~~g~~~~~v~~~~~g~~~d~~~l~~ 163 (396)
T 3jtx_A 88 VDADNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSP--NPFYQIYEG--ATLLGGGEIHFANCPAPSFNPDWRSISE 163 (396)
T ss_dssp CCTTTSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEE--ESCCHHHHH--HHHHTTCEEEEEECCTTTCCCCGGGSCH
T ss_pred CCCCCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEc--CCCcHhHHH--HHHHcCCEEEEeecCCCCCccCHHHHHH
Confidence 3345 788888877777766666543331 1355553 467766544 344578888887631 2222
Q ss_pred Hhc-cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 519 IIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 519 iM~-~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.+. ++..|+|- .---..|.++..---..|+-+|++|++.+
T Consensus 164 ~~~~~~~~v~l~-~p~nptG~~~~~~~l~~i~~~~~~~~~~l 204 (396)
T 3jtx_A 164 EVWKRTKLVFVC-SPNNPSGSVLDLDGWKEVFDLQDKYGFII 204 (396)
T ss_dssp HHHHTEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHHCCEE
T ss_pred hhccCcEEEEEE-CCCCCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence 222 45555552 33334466665555555777888888753
No 160
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=36.19 E-value=88 Score=25.83 Aligned_cols=87 Identities=11% Similarity=0.148 Sum_probs=46.5
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc----hHHHH-hccccEEEEc
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----AISYI-IHEVTRVFLG 529 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds----Avs~i-M~~VdkVlLG 529 (559)
+..|+.+|....-..+...+.+.| .+|+++|..+ .-+..+.+.|+.+ +..|. .+..+ +.++|.||+.
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g--~~v~~~d~~~-----~~~~~~~~~~~~~-~~~d~~~~~~l~~~~~~~~d~vi~~ 77 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMG--HEVLAVDINE-----EKVNAYASYATHA-VIANATEENELLSLGIRNFEYVIVA 77 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCCEEEESCH-----HHHHTTTTTCSEE-EECCTTCHHHHHTTTGGGCSEEEEC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCH-----HHHHHHHHhCCEE-EEeCCCCHHHHHhcCCCCCCEEEEC
Confidence 456888898555555566666656 4677776543 2234455556643 22221 12222 4578888776
Q ss_pred ceeeecCCceecccchHHHHHHHhhCCC
Q 008627 530 ASSVLSNGTVCSRVGTACVAMVAYGFHI 557 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~~IALaAk~~~V 557 (559)
+..-. --...++..|+.+++
T Consensus 78 ~~~~~--------~~~~~~~~~~~~~~~ 97 (144)
T 2hmt_A 78 IGANI--------QASTLTTLLLKELDI 97 (144)
T ss_dssp CCSCH--------HHHHHHHHHHHHTTC
T ss_pred CCCch--------HHHHHHHHHHHHcCC
Confidence 54210 112346666777664
No 161
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=36.12 E-value=1.6e+02 Score=28.71 Aligned_cols=97 Identities=12% Similarity=0.009 Sum_probs=53.4
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------chHHHHh-ccccEE
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYII-HEVTRV 526 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D--------sAvs~iM-~~VdkV 526 (559)
.+++|-|.+..+..++....+.| -+|++. .|.+.|...+ +...|+++..+.. ..+-..+ .++..|
T Consensus 89 ~v~~~~g~~~a~~~~~~~l~~~g--d~vl~~--~p~y~~~~~~--~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v 162 (376)
T 2dou_A 89 EALALIGSQEGLAHLLLALTEPE--DLLLLP--EVAYPSYFGA--ARVASLRTFLIPLREDGLADLKAVPEGVWREAKVL 162 (376)
T ss_dssp SEEEESSHHHHHHHHHHHHCCTT--CEEEEE--SSCCHHHHHH--HHHTTCEEEEECBCTTSSBCGGGSCHHHHHHEEEE
T ss_pred cEEEcCCcHHHHHHHHHHhcCCC--CEEEEC--CCCcHhHHHH--HHHcCCEEEEeeCCCCCCCCHHHHHHhhccCceEE
Confidence 67888777777766666553333 355554 4677775443 3446888887753 1222222 245555
Q ss_pred EEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 527 lLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
++- .---..|.++..-=-..|+-+|++|++.+
T Consensus 163 ~l~-~p~nptG~~~~~~~l~~l~~~~~~~~~~l 194 (376)
T 2dou_A 163 LLN-YPNNPTGAVADWGYFEEALGLARKHGLWL 194 (376)
T ss_dssp EEC-SSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred EEC-CCCCCcCccCCHHHHHHHHHHHHHcCCEE
Confidence 553 22223355544322235667788888753
No 162
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=36.04 E-value=30 Score=33.42 Aligned_cols=98 Identities=17% Similarity=0.171 Sum_probs=55.6
Q ss_pred EEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEE-ec----chHHHHhcc--ccEEEE
Q 008627 457 VLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIHE--VTRVFL 528 (559)
Q Consensus 457 vILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI-~D----sAvs~iM~~--VdkVlL 528 (559)
+||..|-++-|- .+++.+.+.| .+|++++-.........+..|...+ .+.++ .| .++..++.. +|.||-
T Consensus 3 ~vlVTGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 79 (347)
T 1orr_A 3 KLLITGGCGFLGSNLASFALSQG--IDLIVFDNLSRKGATDNLHWLSSLG-NFEFVHGDIRNKNDVTRLITKYMPDSCFH 79 (347)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCCSTTHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred EEEEeCCCchhHHHHHHHHHhCC--CEEEEEeCCCccCchhhhhhhccCC-ceEEEEcCCCCHHHHHHHHhccCCCEEEE
Confidence 688888887764 4444455545 6788776322112223345565544 23333 23 346667777 888887
Q ss_pred cceeeec-----CC---ceecccchHHHHHHHhhCCC
Q 008627 529 GASSVLS-----NG---TVCSRVGTACVAMVAYGFHI 557 (559)
Q Consensus 529 GAdaIla-----NG---sVvNKvGT~~IALaAk~~~V 557 (559)
-|-.... +- .-+|-.||..+.-+|+.+++
T Consensus 80 ~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~ 116 (347)
T 1orr_A 80 LAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNS 116 (347)
T ss_dssp CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6543211 00 12466788888888887665
No 163
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=35.96 E-value=84 Score=31.44 Aligned_cols=96 Identities=14% Similarity=0.061 Sum_probs=50.2
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH-HHHHH-HHhCCCceEEEecc---hHHHHhc-cccEEEEc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLRR-LVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~-~LAk~-L~~~GI~vTyI~Ds---Avs~iM~-~VdkVlLG 529 (559)
+.|++-+-+..+..+|..+.+.| -+|++.+ |.+.|. ..... +...|+++.++... .+-..+. +...|++
T Consensus 76 ~~i~~~sG~~ai~~~~~~~~~~g--d~vl~~~--~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~- 150 (389)
T 3acz_A 76 GSAAFGSGMGAISSSTLAFLQKG--DHLIAGD--TLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPNTKMVYL- 150 (389)
T ss_dssp EEEEESSHHHHHHHHHTTTCCTT--CEEEEES--SCCHHHHHHHHHHHHHTTCEEEEECTTCHHHHHHTCCTTEEEEEE-
T ss_pred eEEEeCCHHHHHHHHHHHHhCCC--CEEEEeC--CCchHHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCeEEEE-
Confidence 45555444444444443333333 3566654 566663 33333 56689999998643 3333343 2334444
Q ss_pred ceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
...--..|.++. -..|+-+|+++|++|
T Consensus 151 ~~~~nptG~~~~---l~~i~~~~~~~~~~l 177 (389)
T 3acz_A 151 ESPANPTCKVSD---IKGIAVVCHERGARL 177 (389)
T ss_dssp ESSCTTTCCCCC---HHHHHHHHHHHTCEE
T ss_pred ECCCCCCCeecC---HHHHHHHHHHcCCEE
Confidence 222223455543 356777888888753
No 164
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=35.94 E-value=1e+02 Score=35.26 Aligned_cols=85 Identities=15% Similarity=0.131 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcccC---CCEEEEecCcH--HHHHHHHHHHHhC---------CceEEEEcCCCCCchHHHHHHHHHhCC-
Q 008627 441 DRVIVKHAVTKIRD---GDVLLTYGSSS--AVEMILQHAHELG---------KQFRVVIVDSRPKHEGKLLLRRLVRKG- 505 (559)
Q Consensus 441 ~e~Ia~~Aa~~I~d---GdvILT~g~Ss--tV~~iL~~A~e~G---------k~FrViVvESRP~~EG~~LAk~L~~~G- 505 (559)
.++|.....+++.+ +.+||..|..+ ++..+|..+...| ...+||.+|..|.-. ..++.....|
T Consensus 393 ~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~--~~l~~~~~Ng~ 470 (745)
T 3ua3_A 393 GEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAI--VTLKYMNVRTW 470 (745)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHH--HHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHH--HHHHHHHhcCC
Confidence 34455554555543 35899988764 3344566655445 578999999987433 2233333333
Q ss_pred -CceEEEecchHHHHh-------ccccEEE
Q 008627 506 -LSCTYTHINAISYII-------HEVTRVF 527 (559)
Q Consensus 506 -I~vTyI~DsAvs~iM-------~~VdkVl 527 (559)
=.|++|.-.+=-+-+ .+||.+|
T Consensus 471 ~d~VtVI~gd~eev~lp~~~~~~ekVDIIV 500 (745)
T 3ua3_A 471 KRRVTIIESDMRSLPGIAKDRGFEQPDIIV 500 (745)
T ss_dssp TTCSEEEESCGGGHHHHHHHTTCCCCSEEE
T ss_pred CCeEEEEeCchhhcccccccCCCCcccEEE
Confidence 348888755544444 4788876
No 165
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=35.93 E-value=1.2e+02 Score=29.86 Aligned_cols=73 Identities=11% Similarity=0.078 Sum_probs=51.1
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhC--CCceEEEecchHHHHhccccEEEE
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK--GLSCTYTHINAISYIIHEVTRVFL 528 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~--GI~vTyI~DsAvs~iM~~VdkVlL 528 (559)
.|.+||.+|..++-..++....+.|-. +|+|+ +|-......+++++... ++.+..+....+...+.++|.||=
T Consensus 126 ~~k~vlVlGaGG~g~aia~~L~~~G~~-~v~i~-~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVIn 200 (283)
T 3jyo_A 126 KLDSVVQVGAGGVGNAVAYALVTHGVQ-KLQVA-DLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVN 200 (283)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCS-EEEEE-CSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCC-EEEEE-ECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEE
Confidence 467899999988877777777665532 56665 44444566788888765 456666665677778888998873
No 166
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=35.84 E-value=1.2e+02 Score=29.72 Aligned_cols=99 Identities=15% Similarity=0.115 Sum_probs=52.0
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-----------chHHHHhc-
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-----------NAISYIIH- 521 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D-----------sAvs~iM~- 521 (559)
...+++|.|.+..+..++....+.| -+|++. .|.+.|...+ +...|+.+..+.. .++-..+.
T Consensus 87 ~~~v~~t~g~~~al~~~~~~l~~~g--d~vl~~--~p~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~ 160 (390)
T 1d2f_A 87 SQTVVYGPSVIYMVSELIRQWSETG--EGVVIH--TPAYDAFYKA--IEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK 160 (390)
T ss_dssp GGGEEEESCHHHHHHHHHHHSSCTT--CEEEEE--ESCCHHHHHH--HHHTTCEEEEEECEECSSSEECCHHHHHHHHTS
T ss_pred HHHEEEcCCHHHHHHHHHHHhcCCC--CEEEEc--CCCcHHHHHH--HHHCCCEEEEeecccCCCccccCHHHHHHHhcc
Confidence 3467777777777766666543333 355553 3666665433 3346777766642 12333333
Q ss_pred -cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 522 -~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
++..|++ ..--...|.++..-=-..|+-+|++||+.+
T Consensus 161 ~~~~~v~l-~~p~nptG~~~~~~~l~~l~~~~~~~~~~l 198 (390)
T 1d2f_A 161 PECKIMLL-CSPQNPTGKVWTCDELEIMADLCERHGVRV 198 (390)
T ss_dssp TTEEEEEE-ESSCTTTCCCCCTTHHHHHHHHHHHTTCEE
T ss_pred CCCeEEEE-eCCCCCCCcCcCHHHHHHHHHHHHHcCCEE
Confidence 3445554 222223355544322345666788888753
No 167
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=35.80 E-value=80 Score=31.77 Aligned_cols=95 Identities=15% Similarity=0.081 Sum_probs=51.4
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH-HHH-HHHHhCCCceEEEecc---hHHHHhc-cccEEEEc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~-~LA-k~L~~~GI~vTyI~Ds---Avs~iM~-~VdkVlLG 529 (559)
++|+|-+-+..+..+|..+.+.| -+|++. .|.+.|. .++ ..+...|+.++++... .+-..+. ++..|++
T Consensus 83 ~~~~~~sGt~A~~~al~~~~~~g--d~Vi~~--~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~- 157 (392)
T 3qhx_A 83 FGRAFSSGMAAADCALRAMLRPG--DHVVIP--DDAYGGTFRLIDKVFTGWNVEYTPVALADLDAVRAAIRPTTRLIWV- 157 (392)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEE--TTCCHHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEE-
T ss_pred cEEEECCHHHHHHHHHHHHhCCC--CEEEEe--CCCcchHHHHHHHHHHhcCcEEEEeCCCCHHHHHHhhCCCCeEEEE-
Confidence 46666655556665565554333 355554 4556554 334 3345679999999743 3334444 3444443
Q ss_pred ceeee-cCCceecccchHHHHHHHhhCCCCC
Q 008627 530 ASSVL-SNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 530 AdaIl-aNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+.+. ..|.+.. -..|+-+|++||+++
T Consensus 158 -~~~~nptG~~~~---l~~i~~la~~~g~~l 184 (392)
T 3qhx_A 158 -ETPTNPLLSIAD---IAGIAQLGADSSAKV 184 (392)
T ss_dssp -ESSCTTTCCCCC---HHHHHHHHHHHTCEE
T ss_pred -ECCCCCCcEEec---HHHHHHHHHHcCCEE
Confidence 2222 2233322 456777888888753
No 168
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=35.59 E-value=2.3e+02 Score=24.97 Aligned_cols=41 Identities=7% Similarity=-0.047 Sum_probs=32.4
Q ss_pred CCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEE
Q 008627 488 SRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (559)
Q Consensus 488 SRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlL 528 (559)
|.-..+-.++++.+.+.|+++..|+++.-+.+-+.+|.+|.
T Consensus 120 sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l~ 160 (188)
T 1tk9_A 120 SGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLV 160 (188)
T ss_dssp SSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEEE
Confidence 33334555778888999999999999888888888998884
No 169
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=35.53 E-value=85 Score=32.67 Aligned_cols=95 Identities=17% Similarity=0.162 Sum_probs=53.6
Q ss_pred EEEecCcHHHHHHHHHHHHhCC------ceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------chHHHHhccc
Q 008627 458 LLTYGSSSAVEMILQHAHELGK------QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIHEV 523 (559)
Q Consensus 458 ILT~g~SstV~~iL~~A~e~Gk------~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D--------sAvs~iM~~V 523 (559)
++|.|.+..+..+|..+.+.|. +-+|++. .|.+.+.. +.+...|+.+.++.. .++-..+.+-
T Consensus 164 ~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~--~~~~~~~~--~~~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~ 239 (514)
T 3mad_A 164 TVTSGGTESLLLAMKTYRDWARATKGITAPEAVVP--VSAHAAFD--KAAQYFGIKLVRTPLDADYRADVAAMREAITPN 239 (514)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEE--TTSCTHHH--HHHHHHTCEEEEECBCTTSCBCHHHHHHHCCTT
T ss_pred EEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEe--CccchHHH--HHHHHcCCeeEEeeeCCCCCCCHHHHHHHhccC
Confidence 7887777777777766654331 1356654 45555532 333345888888863 2343444433
Q ss_pred cEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 524 dkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.++|+...--...|.+.. -..|+-+|++||++|
T Consensus 240 ~~~v~~~~~~nptG~~~~---l~~i~~la~~~~i~l 272 (514)
T 3mad_A 240 TVVVAGSAPGYPHGVVDP---IPEIAALAAEHGIGC 272 (514)
T ss_dssp EEEEEEETTCTTTCCCCC---HHHHHHHHHHHTCEE
T ss_pred CEEEEEeCCCCCCccccC---HHHHHHHHHHhCCeE
Confidence 344444433333455544 356777888888764
No 170
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=35.50 E-value=72 Score=30.45 Aligned_cols=96 Identities=21% Similarity=0.209 Sum_probs=49.5
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------chHHHHhcc---cc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIHE---VT 524 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D--------sAvs~iM~~---Vd 524 (559)
.+++|.|-+..+..++..+.+.|. +|++++ .+.+.. .+...+...|+++.++.. ..+-..+.+ +.
T Consensus 58 ~v~~~~g~t~a~~~~~~~~~~~gd--~vi~~~-~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~ 133 (366)
T 1m32_A 58 SVLLQGSGSYAVEAVLGSALGPQD--KVLIVS-NGAYGA-RMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTIS 133 (366)
T ss_dssp EEEEESCHHHHHHHHHHHSCCTTC--CEEEEE-SSHHHH-HHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCC
T ss_pred EEEEecChHHHHHHHHHHhcCCCC--eEEEEe-CCCccH-HHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCeE
Confidence 467777766666666655533333 455553 333322 233334456888877752 223333332 33
Q ss_pred EEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 525 kVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.|++ ...-...|.++. -..|+-+|++||+++
T Consensus 134 ~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~l 164 (366)
T 1m32_A 134 HIAM-VHSETTTGMLNP---IDEVGALAHRYGKTY 164 (366)
T ss_dssp EEEE-ESEETTTTEECC---HHHHHHHHHHHTCEE
T ss_pred EEEE-ecccCCcceecC---HHHHHHHHHHcCCEE
Confidence 3332 222223376665 346777788888753
No 171
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=35.07 E-value=1.5e+02 Score=28.87 Aligned_cols=103 Identities=13% Similarity=0.035 Sum_probs=56.4
Q ss_pred CCCEEEEecCcHHHHHH-HHHHHHhCCceEEEEcCCCCCchHHH---HHHHHH---hCCCceEEEe--c-chHHHHhccc
Q 008627 454 DGDVLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRPKHEGKL---LLRRLV---RKGLSCTYTH--I-NAISYIIHEV 523 (559)
Q Consensus 454 dGdvILT~g~SstV~~i-L~~A~e~Gk~FrViVvESRP~~EG~~---LAk~L~---~~GI~vTyI~--D-sAvs~iM~~V 523 (559)
.+.+||..|.++-+-.. +..+.++| .+|++++-++...... +..++. ..++.+.... | .++..++.++
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 103 (352)
T 1sb8_A 26 QPKVWLITGVAGFIGSNLLETLLKLD--QKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV 103 (352)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred cCCeEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence 35689999998877544 44455555 5788776544321111 222221 2343322211 1 3466677778
Q ss_pred cEEEEcceeeec-----CC---ceecccchHHHHHHHhhCCCC
Q 008627 524 TRVFLGASSVLS-----NG---TVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 524 dkVlLGAdaIla-----NG---sVvNKvGT~~IALaAk~~~VP 558 (559)
|.||--|-.... +- .-+|-.||..+.-+|+..++.
T Consensus 104 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~ 146 (352)
T 1sb8_A 104 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ 146 (352)
T ss_dssp SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS
T ss_pred CEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 877765532210 00 014678899998888877653
No 172
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=34.76 E-value=71 Score=30.32 Aligned_cols=94 Identities=14% Similarity=0.064 Sum_probs=50.7
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------chHHHHhc--cccE
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EVTR 525 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D--------sAvs~iM~--~Vdk 525 (559)
.+++|.|.+..+..++..+.+ -+|++. .|.+-|..+...+...|+.+.++.. ..+-..+. ++..
T Consensus 54 ~v~~t~g~t~a~~~~~~~~~~----d~vl~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~ 127 (353)
T 2yrr_A 54 VAALAGSGSLGMEAGLANLDR----GPVLVL--VNGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRM 127 (353)
T ss_dssp EEEESSCHHHHHHHHHHTCSC----CCEEEE--ECSHHHHHHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHSCCSE
T ss_pred eEEEcCCcHHHHHHHHHHhcC----CcEEEE--cCCCchHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhCCCCE
Confidence 456666655555555544322 246655 3344454344445567888888762 22333333 3455
Q ss_pred EEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 526 VlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
|++ .+.-...|.++. -..|+-+|++||+++
T Consensus 128 v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~l 157 (353)
T 2yrr_A 128 VAL-VHGETSTGVLNP---AEAIGALAKEAGALF 157 (353)
T ss_dssp EEE-ESEETTTTEECC---HHHHHHHHHHHTCEE
T ss_pred EEE-EccCCCcceecC---HHHHHHHHHHcCCeE
Confidence 544 344444566655 346777788888753
No 173
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=34.72 E-value=62 Score=29.31 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=5.0
Q ss_pred cccEEEEcceeeecCC
Q 008627 522 EVTRVFLGASSVLSNG 537 (559)
Q Consensus 522 ~VdkVlLGAdaIlaNG 537 (559)
+++.|+.|...+..+|
T Consensus 113 ~~~~v~~~~~~~~~~~ 128 (240)
T 3bcv_A 113 TCDAVFTGLKRITMAG 128 (240)
T ss_dssp TCSEEEC---------
T ss_pred CCCEEEEeeEEEccCC
Confidence 4777777776666666
No 174
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=34.35 E-value=1.8e+02 Score=28.70 Aligned_cols=102 Identities=14% Similarity=0.048 Sum_probs=49.4
Q ss_pred cCCCEEE--EecCcHHHHHHHHH--HHHhCC---ceEEEEcCCCCCchHHHHHHHHHhCCCc-eEEEec----------c
Q 008627 453 RDGDVLL--TYGSSSAVEMILQH--AHELGK---QFRVVIVDSRPKHEGKLLLRRLVRKGLS-CTYTHI----------N 514 (559)
Q Consensus 453 ~dGdvIL--T~g~SstV~~iL~~--A~e~Gk---~FrViVvESRP~~EG~~LAk~L~~~GI~-vTyI~D----------s 514 (559)
....+++ |.|-+..+..++.- ....|+ .-+|++.+ |.+.|... .+...|++ +..+.. .
T Consensus 96 ~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~--p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~~d~~ 171 (412)
T 1ajs_A 96 QEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSS--PTWENHNG--VFTTAGFKDIRSYRYWDTEKRGLDLQ 171 (412)
T ss_dssp HTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEE--SCCTHHHH--HHHHTTCSCEEEEECEETTTTEECHH
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcC--CCcHHHHH--HHHHcCCceeEEEeeecCCCCccCHH
Confidence 3456777 77777777666432 223331 02455553 56666433 23346777 666643 1
Q ss_pred hHHHHhcc---ccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 515 AISYIIHE---VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 515 Avs~iM~~---VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
++-..+.+ -+++++=+..-...|.++..-=-..|+-+|++||+.
T Consensus 172 ~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~ 218 (412)
T 1ajs_A 172 GFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLF 218 (412)
T ss_dssp HHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 22233332 123433333333445444432223466677777764
No 175
>1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase; HET: 4NP; 1.70A {Saccharomyces cerevisiae} SCOP: c.44.1.1 PDB: 1d2a_A* 1d1p_A*
Probab=34.21 E-value=40 Score=30.61 Aligned_cols=68 Identities=15% Similarity=0.109 Sum_probs=45.6
Q ss_pred cCcHHHHHHHHHHHH-hCCc---eEEEEcCCCCCchHH----HHHHHHHhCCCceEEEecchHH-HHhccccEEEEcc
Q 008627 462 GSSSAVEMILQHAHE-LGKQ---FRVVIVDSRPKHEGK----LLLRRLVRKGLSCTYTHINAIS-YIIHEVTRVFLGA 530 (559)
Q Consensus 462 g~SstV~~iL~~A~e-~Gk~---FrViVvESRP~~EG~----~LAk~L~~~GI~vTyI~DsAvs-~iM~~VdkVlLGA 530 (559)
|+|...+.+|++... .|.. |.|.-.-+.++..|. ...+.|.+.||++. ..--.+. ..+.+.|.||.=.
T Consensus 19 cRSpmAEal~~~~~~~~gl~~~~~~v~SAGt~~~~~g~~~~p~a~~~l~~~Gid~s-~~ar~l~~~~~~~~DlIl~M~ 95 (161)
T 1d1q_A 19 CRSPMAEAIFKHEVEKANLENRFNKIDSFGTSNYHVGESPDHRTVSICKQHGVKIN-HKGKQIKTKHFDEYDYIIGMD 95 (161)
T ss_dssp SHHHHHHHHHHHHHHHTTCGGGEEEEEEEESSCTTBTCCCCHHHHHHHHHTTCCCC-CCBCBCCGGGGGTCSEEEESS
T ss_pred HHHHHHHHHHHHHHHHcCCCCCeEEEEeccccCCcCCCCCCHHHHHHHHHcCcCCC-ceEeECCHHHHhhCCEEEEeC
Confidence 678999999998654 4433 888888787765553 45788889999876 3222222 2345678777643
No 176
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=34.18 E-value=64 Score=28.05 Aligned_cols=71 Identities=17% Similarity=0.187 Sum_probs=41.8
Q ss_pred cCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHH-hCCCceEEEecc----hHHHH-hccccEE
Q 008627 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLV-RKGLSCTYTHIN----AISYI-IHEVTRV 526 (559)
Q Consensus 453 ~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~-~~GI~vTyI~Ds----Avs~i-M~~VdkV 526 (559)
..++.|+.+|...+-..+...+.+.| ++|+++|..+.. +..|. ..|+.+.+ .|. .+... +..+|.|
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g--~~V~vid~~~~~-----~~~~~~~~g~~~~~-~d~~~~~~l~~~~~~~ad~V 88 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSG--HSVVVVDKNEYA-----FHRLNSEFSGFTVV-GDAAEFETLKECGMEKADMV 88 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCGGG-----GGGSCTTCCSEEEE-SCTTSHHHHHTTTGGGCSEE
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHH-----HHHHHhcCCCcEEE-ecCCCHHHHHHcCcccCCEE
Confidence 35688999998666566666666655 578888876543 23344 45665332 221 12222 4568888
Q ss_pred EEcce
Q 008627 527 FLGAS 531 (559)
Q Consensus 527 lLGAd 531 (559)
|+...
T Consensus 89 i~~~~ 93 (155)
T 2g1u_A 89 FAFTN 93 (155)
T ss_dssp EECSS
T ss_pred EEEeC
Confidence 77643
No 177
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=33.99 E-value=52 Score=33.26 Aligned_cols=90 Identities=7% Similarity=0.057 Sum_probs=53.4
Q ss_pred HHHHHHHh----cccC-CCEEEEecCcHHHHHHHHHHHHh---CCceEEEEcCC----CCCchHHHHHHHHHhC-CCceE
Q 008627 443 VIVKHAVT----KIRD-GDVLLTYGSSSAVEMILQHAHEL---GKQFRVVIVDS----RPKHEGKLLLRRLVRK-GLSCT 509 (559)
Q Consensus 443 ~Ia~~Aa~----~I~d-GdvILT~g~SstV~~iL~~A~e~---Gk~FrViVvES----RP~~EG~~LAk~L~~~-GI~vT 509 (559)
.|++.|++ +|.+ |++ +-+++++|+..+....... .+..+|+-++. .|......|++.|.+. |+++.
T Consensus 126 ~ia~~AA~~l~~~i~~~~~~-igl~~GsT~~~~~~~L~~~~~~~~~v~vv~l~ggl~~~~~~~~~~i~~~la~~~~~~~~ 204 (345)
T 2o0m_A 126 DFGDVLTNTLNLLLPNGENT-IAVMGGTTMAMVAENMGSLETEKRHNLFVPARGGIGEAVSVQANSISAVMANKTGGNYR 204 (345)
T ss_dssp HHHHHHHHHHHHHCCSEEEE-EEECCSHHHHHHHHTCCCCCCSSEEEEEEESBSCCCCCGGGSHHHHHHHHHHHHTCEEC
T ss_pred HHHHHHHHHHHHhcCcCCCE-EEECCcHHHHHHHHHhhhccCCCCCcEEEEcCCcCCCCcccCHHHHHHHHHHHhCCceE
Confidence 34444444 5888 654 5578999988887766432 13455555442 2333455778888876 88776
Q ss_pred EEec--c---hH-HHHh------------ccccEEEEcceee
Q 008627 510 YTHI--N---AI-SYII------------HEVTRVFLGASSV 533 (559)
Q Consensus 510 yI~D--s---Av-s~iM------------~~VdkVlLGAdaI 533 (559)
++.. . .. -.++ ..+|++|+|.-.+
T Consensus 205 ~l~~P~~~~~~~~~~l~~~~~~~~~l~~~~~~DiailGIG~~ 246 (345)
T 2o0m_A 205 ALYVPEQLSRETYNSLLQEPSIQEVLTLISHANCVVHSIGRA 246 (345)
T ss_dssp CCCCCSSCCHHHHHHHHTCHHHHHHHHHHHTCSEEEECCEEH
T ss_pred EEeccccCCHHHHHHHHhChHHHHHHHHHHcCCEEEEccCCc
Confidence 5322 1 11 1112 2699999998754
No 178
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=33.95 E-value=78 Score=31.25 Aligned_cols=44 Identities=5% Similarity=-0.193 Sum_probs=24.9
Q ss_pred hHHHHhccccEEEEcceeeec----CCceecccchHHHHHHHhhCCCC
Q 008627 515 AISYIIHEVTRVFLGASSVLS----NGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 515 Avs~iM~~VdkVlLGAdaIla----NGsVvNKvGT~~IALaAk~~~VP 558 (559)
.+..++.++|.||--|-.... .-.-.|-.||..++-+|+..++.
T Consensus 39 ~l~~~~~~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~ 86 (369)
T 3st7_A 39 ELESALLKADFIVHLAGVNRPEHDKEFSLGNVSYLDHVLDILTRNTKK 86 (369)
T ss_dssp HHHHHHHHCSEEEECCCSBCTTCSTTCSSSCCBHHHHHHHHHTTCSSC
T ss_pred HHHHHhccCCEEEECCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344455566766654422211 11234777888888888877754
No 179
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=33.66 E-value=81 Score=25.90 Aligned_cols=57 Identities=12% Similarity=0.129 Sum_probs=39.0
Q ss_pred EEEEecCcHHHHHHHHHHHHhCCceEEEEcC-CCCCchHHHHHHHHHh-C--CCceEEEec
Q 008627 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVD-SRPKHEGKLLLRRLVR-K--GLSCTYTHI 513 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~Gk~FrViVvE-SRP~~EG~~LAk~L~~-~--GI~vTyI~D 513 (559)
+|.+.....-....+......+..+.++++| .-|...|.++++.|.+ . .+++.+++.
T Consensus 29 ~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~ 89 (133)
T 2r25_B 29 NIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTA 89 (133)
T ss_dssp CEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCCSCEEEEES
T ss_pred eEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCCCCCEEEEEC
Confidence 4555555555555555544445678899998 4588899999999986 3 467776664
No 180
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=33.64 E-value=1.6e+02 Score=29.17 Aligned_cols=87 Identities=14% Similarity=0.075 Sum_probs=50.3
Q ss_pred CEEEEecCcHHHHHHH-HHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHh-ccccEEEEcceee
Q 008627 456 DVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII-HEVTRVFLGASSV 533 (559)
Q Consensus 456 dvILT~g~SstV~~iL-~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM-~~VdkVlLGAdaI 533 (559)
..|+.+|-..+=...+ +.+++ +.++|.+.|.++..+ +..+|.+.||++.+-.+. ..+. .++|.|++..- |
T Consensus 5 ~~i~~iGiGg~Gms~~A~~L~~--~G~~V~~~D~~~~~~---~~~~L~~~gi~v~~g~~~--~~l~~~~~d~vV~Spg-i 76 (326)
T 3eag_A 5 KHIHIIGIGGTFMGGLAAIAKE--AGFEVSGCDAKMYPP---MSTQLEALGIDVYEGFDA--AQLDEFKADVYVIGNV-A 76 (326)
T ss_dssp CEEEEESCCSHHHHHHHHHHHH--TTCEEEEEESSCCTT---HHHHHHHTTCEEEESCCG--GGGGSCCCSEEEECTT-C
T ss_pred cEEEEEEECHHHHHHHHHHHHh--CCCEEEEEcCCCCcH---HHHHHHhCCCEEECCCCH--HHcCCCCCCEEEECCC-c
Confidence 4566665544333222 23344 447899999987643 456788899987654332 2334 46888877642 2
Q ss_pred ecCCceecccchHHHHHHHhhCCCCC
Q 008627 534 LSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 534 laNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
-. ....-..|++.|+||
T Consensus 77 ~~---------~~p~~~~a~~~gi~v 93 (326)
T 3eag_A 77 KR---------GMDVVEAILNLGLPY 93 (326)
T ss_dssp CT---------TCHHHHHHHHTTCCE
T ss_pred CC---------CCHHHHHHHHcCCcE
Confidence 21 123445677777774
No 181
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=33.58 E-value=2.2e+02 Score=24.19 Aligned_cols=55 Identities=11% Similarity=0.231 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH
Q 008627 376 DLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINE 435 (559)
Q Consensus 376 dL~~~L~~~i~~L~~aRPtsvsmgNAIrrlk~~I~~l~~~~s~~eaK~~L~e~Id~fI~E 435 (559)
.|.+.++.++...+..+ -.++....+..|.-..+.. -.+++|..|+..|..|+.+
T Consensus 37 GW~Devr~~~r~~i~~~-~~vt~~~L~~~I~P~Ar~~----VP~~VK~Ell~~Ir~fL~~ 91 (96)
T 3mhs_B 37 GWVDKVKDLTKSEMNIN-ESTNFTQILSTVEPKALEM----VSDSTRETVLKQIREFLEE 91 (96)
T ss_dssp THHHHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhc-CCCCHHHHHHHHhHHHHHH----CCHHHHHHHHHHHHHHHHH
Confidence 46677777776666555 5677777777777666543 3568999999999999976
No 182
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=33.53 E-value=1.9e+02 Score=28.90 Aligned_cols=71 Identities=14% Similarity=0.099 Sum_probs=45.7
Q ss_pred CCEEEEecCc---HHHHHHHHHHHHh---CCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-cchHHHHhccccEEE
Q 008627 455 GDVLLTYGSS---SAVEMILQHAHEL---GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-INAISYIIHEVTRVF 527 (559)
Q Consensus 455 GdvILT~g~S---stV~~iL~~A~e~---Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-DsAvs~iM~~VdkVl 527 (559)
..+||+++-| ..+...+..+.+. ...+.|++.-.+... ..+.+.+.+.++++.+.. ..-+..+|..+|.||
T Consensus 180 ~~~ilv~gGs~g~~~~~~~~~~al~~l~~~~~~~vi~~~G~~~~--~~~~~~~~~~~~~~~v~~f~~dm~~~l~~aDlvI 257 (365)
T 3s2u_A 180 RVNLLVLGGSLGAEPLNKLLPEALAQVPLEIRPAIRHQAGRQHA--EITAERYRTVAVEADVAPFISDMAAAYAWADLVI 257 (365)
T ss_dssp CCEEEECCTTTTCSHHHHHHHHHHHTSCTTTCCEEEEECCTTTH--HHHHHHHHHTTCCCEEESCCSCHHHHHHHCSEEE
T ss_pred CcEEEEECCcCCccccchhhHHHHHhcccccceEEEEecCcccc--ccccceecccccccccccchhhhhhhhccceEEE
Confidence 4578888765 3445555555542 234566655443332 345667778888888775 356888899999886
No 183
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=33.31 E-value=93 Score=32.02 Aligned_cols=73 Identities=14% Similarity=0.121 Sum_probs=40.9
Q ss_pred eEEEEcCCCCCchHHH-HH-HHHHhCCCceEEEec---chHHHHhcc-ccEEEEcceeeecCCceecccchHHHHHHHhh
Q 008627 481 FRVVIVDSRPKHEGKL-LL-RRLVRKGLSCTYTHI---NAISYIIHE-VTRVFLGASSVLSNGTVCSRVGTACVAMVAYG 554 (559)
Q Consensus 481 FrViVvESRP~~EG~~-LA-k~L~~~GI~vTyI~D---sAvs~iM~~-VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~ 554 (559)
-+|++.+ |.+.|.. +. ..|...|++++++.. .++-..+.+ ...|++ ...--..|.+.. -..|+-+|++
T Consensus 122 d~Vi~~~--~~y~~~~~~~~~~l~~~G~~v~~v~~~d~~~le~ai~~~tklV~~-e~~~NptG~v~d---l~~I~~la~~ 195 (415)
T 2fq6_A 122 DHVLMTN--TAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFL-ESPGSITMEVHD---VPAIVAAVRS 195 (415)
T ss_dssp CEEEEET--TSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGGCCTTEEEEEE-ESSCTTTCCCCC---HHHHHHHHHH
T ss_pred CEEEEeC--CCchHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhhccCCcEEEE-ECCCCCCCEeec---HHHHHHHHHh
Confidence 3666654 6666654 33 335668999999863 344444443 333433 222222344442 2567888898
Q ss_pred --CCCCC
Q 008627 555 --FHIPV 559 (559)
Q Consensus 555 --~~VPV 559 (559)
+|++|
T Consensus 196 ~~~g~~l 202 (415)
T 2fq6_A 196 VVPDAII 202 (415)
T ss_dssp HCTTCEE
T ss_pred hcCCCEE
Confidence 88864
No 184
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=33.24 E-value=1.4e+02 Score=29.53 Aligned_cols=101 Identities=15% Similarity=0.210 Sum_probs=51.1
Q ss_pred cCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec----------chHHHHhcc
Q 008627 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIHE 522 (559)
Q Consensus 453 ~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D----------sAvs~iM~~ 522 (559)
....+++|.|.+..+..++....+.| -+|++.+ |.+.|... .+...|+.+.++.. .++-..+.+
T Consensus 103 ~~~~v~~~~g~~~al~~~~~~l~~~g--d~vl~~~--p~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 176 (416)
T 1bw0_A 103 VKDNVVLCSGGSHGILMAITAICDAG--DYALVPQ--PGFPHYET--VCKAYGIGMHFYNCRPENDWEADLDEIRRLKDD 176 (416)
T ss_dssp CGGGEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCTHHHH--HHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCT
T ss_pred CcceEEEeCChHHHHHHHHHHhCCCC--CEEEEcC--CCcHhHHH--HHHHcCcEEEEeecCcccCCCCCHHHHHHHhcc
Confidence 34567888777777766666553333 3566553 55655433 34456887777652 122222322
Q ss_pred ccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 523 VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
-+++++=.+---..|.++..-=-..|+-+|++||+.|
T Consensus 177 ~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~l 213 (416)
T 1bw0_A 177 KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPL 213 (416)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCE
T ss_pred CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEE
Confidence 1233222222122344443222345666788888753
No 185
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=33.19 E-value=1.2e+02 Score=29.97 Aligned_cols=39 Identities=28% Similarity=0.345 Sum_probs=26.8
Q ss_pred cccCC-CEEEEecCcHHH-HHHHHHHHHhCCceEEEEcCCCCC
Q 008627 451 KIRDG-DVLLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRPK 491 (559)
Q Consensus 451 ~I~dG-dvILT~g~SstV-~~iL~~A~e~Gk~FrViVvESRP~ 491 (559)
.++.| ++||.+|-++.| ..++.-|+..| .+||++.+.+.
T Consensus 163 ~~~~g~~~VlV~Ga~G~vG~~aiqlak~~G--a~vi~~~~~~~ 203 (364)
T 1gu7_A 163 KLTPGKDWFIQNGGTSAVGKYASQIGKLLN--FNSISVIRDRP 203 (364)
T ss_dssp CCCTTTCEEEESCTTSHHHHHHHHHHHHHT--CEEEEEECCCT
T ss_pred ccCCCCcEEEECCCCcHHHHHHHHHHHHCC--CEEEEEecCcc
Confidence 46789 999999996666 45556666655 46777765443
No 186
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=33.11 E-value=77 Score=28.64 Aligned_cols=92 Identities=13% Similarity=0.027 Sum_probs=53.9
Q ss_pred CEEEEecCcHHHHHHHH-HHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhccccEEEEc
Q 008627 456 DVLLTYGSSSAVEMILQ-HAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIHEVTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~iL~-~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~~VdkVlLG 529 (559)
.+||..|-++.+-..|. .+.+.| .+|+++.-++... ....-.++++. | ..+..+++++|.||--
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~--------~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ 74 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRG--FEVTAVVRHPEKI--------KIENEHLKVKKADVSSLDEVCEVCKGADAVISA 74 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTT--CEEEEECSCGGGC--------CCCCTTEEEECCCTTCHHHHHHHHTTCSEEEEC
T ss_pred CEEEEEcCCchHHHHHHHHHHHCC--CEEEEEEcCcccc--------hhccCceEEEEecCCCHHHHHHHhcCCCEEEEe
Confidence 57999999888854444 444544 6888886554321 00012333332 2 3466677788888876
Q ss_pred ceeeecCCc--eecccchHHHHHHHhhCCC
Q 008627 530 ASSVLSNGT--VCSRVGTACVAMVAYGFHI 557 (559)
Q Consensus 530 AdaIlaNGs--VvNKvGT~~IALaAk~~~V 557 (559)
|-....+-. -+|-.||..+.-+|+..++
T Consensus 75 a~~~~~~~~~~~~n~~~~~~l~~~~~~~~~ 104 (227)
T 3dhn_A 75 FNPGWNNPDIYDETIKVYLTIIDGVKKAGV 104 (227)
T ss_dssp CCC------CCSHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCChhHHHHHHHHHHHHHHHHHHhCC
Confidence 633322211 1277889999888888775
No 187
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=33.11 E-value=1.9e+02 Score=28.42 Aligned_cols=53 Identities=9% Similarity=0.146 Sum_probs=27.9
Q ss_pred CCCEEE--EecCcHHHHHHHHHHH---HhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 008627 454 DGDVLL--TYGSSSAVEMILQHAH---ELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 454 dGdvIL--T~g~SstV~~iL~~A~---e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~ 512 (559)
...+++ |.|-+..+..++.... +.|. +|+|.+ |.+.+... .+...|.++.++.
T Consensus 94 ~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd--~Vlv~~--p~~~~~~~--~~~~~g~~~~~~~ 151 (401)
T 7aat_A 94 SGRYVTVQGISGTGSLRVGANFLQRFFKFSR--DVYLPK--PSWGNHTP--IFRDAGLQLQAYR 151 (401)
T ss_dssp TTCEEEEEEEHHHHHHHHHHHHHHHHCTTCC--EEEEEE--SCCTTHHH--HHHHTTCEEEEEE
T ss_pred cCceEEEecCcchHHHHHHHHHHHHhccCCC--EEEEcC--CCchhHHH--HHHHcCCeeEeee
Confidence 445554 7777666654444332 2232 455543 66655432 2334677777775
No 188
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=33.09 E-value=1.3e+02 Score=29.67 Aligned_cols=101 Identities=17% Similarity=0.184 Sum_probs=50.8
Q ss_pred cCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-------chHHHHhc--cc
Q 008627 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-------NAISYIIH--EV 523 (559)
Q Consensus 453 ~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D-------sAvs~iM~--~V 523 (559)
....+++|.|.+..+..++....+.| -+|++. .|.+.|...+ +...|.++.++.. .++-..+. ++
T Consensus 90 ~~~~v~~~~g~~~al~~~~~~~~~~g--d~Vl~~--~p~y~~~~~~--~~~~g~~~~~~~~~~~~~d~~~l~~~l~~~~~ 163 (397)
T 2zyj_A 90 RPEEVLITTGSQQALDLVGKVFLDEG--SPVLLE--APSYMGAIQA--FRLQGPRFLTVPAGEEGPDLDALEEVLKRERP 163 (397)
T ss_dssp CGGGEEEESHHHHHHHHHHHHHCCTT--CEEEEE--ESCCHHHHHH--HHTTCCEEEEEEEETTEECHHHHHHHHHHCCC
T ss_pred ChhhEEEeccHHHHHHHHHHHhCCCC--CEEEEe--CCCcHHHHHH--HHHcCCEEEecCcCCCCCCHHHHHHHHhhcCC
Confidence 33467777777777666665543333 345553 3666665432 3346777776642 22333333 34
Q ss_pred cEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 524 dkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
..|++=...-...|.++..-=-..|+-+|++|++.+
T Consensus 164 ~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~l 199 (397)
T 2zyj_A 164 RFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVV 199 (397)
T ss_dssp SCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCE
T ss_pred eEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence 444332222223354443321225666778887753
No 189
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=32.99 E-value=83 Score=30.34 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=9.6
Q ss_pred hHHHHHHHHHhCCCceEEEe
Q 008627 493 EGKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 493 EG~~LAk~L~~~GI~vTyI~ 512 (559)
.|+.+++.|.+.|+.|.++.
T Consensus 12 ~~~~l~~a~~~~G~~v~~~~ 31 (334)
T 2r85_A 12 SALQILKGAKDEGFETIAFG 31 (334)
T ss_dssp THHHHHHHHHHTTCCEEEES
T ss_pred hHHHHHHHHHhCCCEEEEEE
Confidence 34444555555555544443
No 190
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=32.87 E-value=91 Score=30.00 Aligned_cols=96 Identities=16% Similarity=0.212 Sum_probs=50.2
Q ss_pred cCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------chHHHHhcccc
Q 008627 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIHEVT 524 (559)
Q Consensus 453 ~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D--------sAvs~iM~~Vd 524 (559)
....+++|-|.+..+..++..+ -+|++.+ |.+.+... .+...|+.+.++.. .++-..+.+ .
T Consensus 77 ~~~~i~~~~g~t~al~~~~~~~------d~vi~~~--~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~-~ 145 (361)
T 3ftb_A 77 KDIGIVLGNGASEIIELSISLF------EKILIIV--PSYAEYEI--NAKKHGVSVVFSYLDENMCIDYEDIISKIDD-V 145 (361)
T ss_dssp CSCEEEEESSHHHHHHHHHTTC------SEEEEEE--SCCTHHHH--HHHHTTCEEEEEECCTTSCCCHHHHHHHTTT-C
T ss_pred CcceEEEcCCHHHHHHHHHHHc------CcEEEec--CChHHHHH--HHHHcCCeEEEeecCcccCCCHHHHHHhccC-C
Confidence 3345666666666655555443 2555543 56665433 34456888888763 244444555 3
Q ss_pred EEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 525 kVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
++++=.+.--..|.++..---..|+-+|++||+.+
T Consensus 146 ~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~l 180 (361)
T 3ftb_A 146 DSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTI 180 (361)
T ss_dssp SEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEE
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEE
Confidence 33321222223344444333445666777888753
No 191
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=32.72 E-value=1.2e+02 Score=29.96 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=20.1
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHH------hCCceEEEEcC
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHE------LGKQFRVVIVD 487 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e------~Gk~FrViVvE 487 (559)
+....+++|-|-+..+..+|..+.. .|+ -+|++.+
T Consensus 95 ~g~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~-~~vi~~~ 135 (397)
T 2ord_A 95 TFGGKVFFANTGTEANEAAIKIARKYGKKKSEKK-YRILSAH 135 (397)
T ss_dssp TTSCEEEEESSHHHHHHHHHHHHHHHHHHHCTTC-CEEEEEB
T ss_pred cCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCC-ceEEEEc
Confidence 3334567777777776666665432 232 3577665
No 192
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=32.63 E-value=1.3e+02 Score=30.63 Aligned_cols=96 Identities=18% Similarity=0.172 Sum_probs=50.6
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHH-HH-HHHhCCCceEEE-ec---chHHHHhccccEEEEc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LR-RLVRKGLSCTYT-HI---NAISYIIHEVTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~L-Ak-~L~~~GI~vTyI-~D---sAvs~iM~~VdkVlLG 529 (559)
+.|++-+.+..+..+|..+...| -+|++. .|.+.|... +. .+...|+.+.++ .. ..+-..+.+-+++|+
T Consensus 75 ~~v~~~sGt~A~~~~l~~~~~~g--d~vi~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~i~~~~~~v~- 149 (421)
T 2ctz_A 75 AALATASGHAAQFLALTTLAQAG--DNIVST--PNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDEKTRAWW- 149 (421)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEC--SCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHHHHHHCCTTEEEEE-
T ss_pred ceEEecCHHHHHHHHHHHHhCCC--CEEEEe--CCCchHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHhhccCCeEEE-
Confidence 34544443445555554443333 356554 456666543 22 245679999988 43 344444443234444
Q ss_pred ceeee-cCCceecccchHHHHHHHhhCCCCC
Q 008627 530 ASSVL-SNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 530 AdaIl-aNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.+.+. ..|.+.. -..|+-+|+++|+++
T Consensus 150 ~~~~~n~~G~~~~---l~~i~~~a~~~g~~l 177 (421)
T 2ctz_A 150 VESIGNPALNIPD---LEALAQAAREKGVAL 177 (421)
T ss_dssp EESSCTTTCCCCC---HHHHHHHHHHHTCEE
T ss_pred EECCCCCCCcccC---HHHHHHHHHHcCCEE
Confidence 23333 2344444 456778888888764
No 193
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=32.19 E-value=1e+02 Score=29.55 Aligned_cols=54 Identities=20% Similarity=0.204 Sum_probs=29.6
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI 513 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D 513 (559)
...+++|-|.+..+..++....+.| -+|++.+ |.+.+.. ..+...|+++.++..
T Consensus 68 ~~~i~~~~g~~~a~~~~~~~l~~~g--d~vl~~~--~~~~~~~--~~~~~~g~~~~~~~~ 121 (354)
T 3ly1_A 68 APSILLTAGSSEGIRAAIEAYASLE--AQLVIPE--LTYGDGE--HFAKIAGMKVTKVKM 121 (354)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTT--CEEEEES--SSCTHHH--HHHHHTTCEEEEECC
T ss_pred hHHEEEeCChHHHHHHHHHHHhCCC--CeEEECC--CCchHHH--HHHHHcCCEEEEecC
Confidence 3456777666666665555443333 3455543 5555542 333456777777753
No 194
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=32.17 E-value=1.1e+02 Score=29.66 Aligned_cols=75 Identities=20% Similarity=0.199 Sum_probs=43.0
Q ss_pred EEEEe--cCcHHHHHHHHHHHHhCCceEEEE-cCCCCCchHHHHHHHHHhCCCceEEEec----------chHHHHhc--
Q 008627 457 VLLTY--GSSSAVEMILQHAHELGKQFRVVI-VDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH-- 521 (559)
Q Consensus 457 vILT~--g~SstV~~iL~~A~e~Gk~FrViV-vESRP~~EG~~LAk~L~~~GI~vTyI~D----------sAvs~iM~-- 521 (559)
.|+.+ |..+....+|....+....++|.. +-.+|...|.+.| .+.||++.++.. ..+-..++
T Consensus 24 rI~~l~SG~g~~~~~~l~~l~~~~~~~~I~~Vvt~~~~~~~~~~A---~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~ 100 (229)
T 3auf_A 24 RIGVLISGSGTNLQAILDGCREGRIPGRVAVVISDRADAYGLERA---RRAGVDALHMDPAAYPSRTAFDAALAERLQAY 100 (229)
T ss_dssp EEEEEESSCCHHHHHHHHHHHTTSSSEEEEEEEESSTTCHHHHHH---HHTTCEEEECCGGGSSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEeCCcHHHHHHHHHHHhCCCCCeEEEEEcCCCchHHHHHH---HHcCCCEEEECcccccchhhccHHHHHHHHhc
Confidence 44444 777776666665554322455432 2234666665555 457999987652 33444454
Q ss_pred cccEEEEcce-eee
Q 008627 522 EVTRVFLGAS-SVL 534 (559)
Q Consensus 522 ~VdkVlLGAd-aIl 534 (559)
++|.+|+-+- .|+
T Consensus 101 ~~Dliv~agy~~IL 114 (229)
T 3auf_A 101 GVDLVCLAGYMRLV 114 (229)
T ss_dssp TCSEEEESSCCSCC
T ss_pred CCCEEEEcChhHhC
Confidence 6898888543 444
No 195
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=32.17 E-value=1.7e+02 Score=28.11 Aligned_cols=85 Identities=15% Similarity=0.149 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcccCCCEEEEecCc-HHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHH-HHhCC--CceEEEecchH
Q 008627 441 DRVIVKHAVTKIRDGDVLLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRR-LVRKG--LSCTYTHINAI 516 (559)
Q Consensus 441 ~e~Ia~~Aa~~I~dGdvILT~g~S-stV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~-L~~~G--I~vTyI~DsAv 516 (559)
.+.|...+..++++|.+||=+|++ +.....|.... .....+|+-+|-.|.. .+.|++ +.+.| .+|+++.....
T Consensus 57 ~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~-~~~~~~v~gvD~s~~m--l~~A~~~~~~~~~~~~v~~~~~D~~ 133 (261)
T 4gek_A 57 ISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNI-HHDNCKIIAIDNSPAM--IERCRRHIDAYKAPTPVDVIEGDIR 133 (261)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTC-CSSSCEEEEEESCHHH--HHHHHHHHHTSCCSSCEEEEESCTT
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhc-CCCCCEEEEEECCHHH--HHHHHHHHHhhccCceEEEeecccc
Confidence 355677777889999999999987 34332332211 1245789999876532 233444 44444 46888876555
Q ss_pred HHHhccccEEEE
Q 008627 517 SYIIHEVTRVFL 528 (559)
Q Consensus 517 s~iM~~VdkVlL 528 (559)
..-....|.|++
T Consensus 134 ~~~~~~~d~v~~ 145 (261)
T 4gek_A 134 DIAIENASMVVL 145 (261)
T ss_dssp TCCCCSEEEEEE
T ss_pred ccccccccccee
Confidence 444455666654
No 196
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=31.98 E-value=1.3e+02 Score=30.12 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=34.7
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY 510 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTy 510 (559)
.+..|++||++|.+.+=..++.-|+..|- -+|+++++.+. -.+++++| |.+.++
T Consensus 179 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~--~~~~a~~l---Ga~~vi 232 (370)
T 4ej6_A 179 GIKAGSTVAILGGGVIGLLTVQLARLAGA-TTVILSTRQAT--KRRLAEEV---GATATV 232 (370)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCHH--HHHHHHHH---TCSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHH--HHHHHHHc---CCCEEE
Confidence 47889999999985544566666665553 17888887653 23455554 555433
No 197
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=31.78 E-value=3.2e+02 Score=26.55 Aligned_cols=97 Identities=13% Similarity=0.079 Sum_probs=46.1
Q ss_pred CEEEEecCcHHHHHHHHH--HHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec----------chHHHHhc--
Q 008627 456 DVLLTYGSSSAVEMILQH--AHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH-- 521 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~--A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D----------sAvs~iM~-- 521 (559)
.+++|.|.+..+..+++. ..+.|. +|++. .|.+.+.. ..+...|+.+.++.. ..+-..+.
T Consensus 97 ~i~~t~g~~~a~~~~~~~~~~~~~gd--~vl~~--~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 170 (397)
T 3fsl_A 97 ATIQTLGGSGALKVGADFLKRYFPES--GVWVS--DPTWENHV--AIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTL 170 (397)
T ss_dssp EEEEESHHHHHHHHHHHHHHHHCTTC--CEEEE--SSCCHHHH--HHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTC
T ss_pred EEEEcCCcHHHHHHHHHHHHhcCCCC--eEEEe--CCCchhHH--HHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhC
Confidence 566777766666555322 222232 34443 35565542 233346777766643 12333333
Q ss_pred -cccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 522 -~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
.-+++++=...--..|.+++.---..|+-+|++|++.
T Consensus 171 ~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~ 208 (397)
T 3fsl_A 171 QAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELI 208 (397)
T ss_dssp CTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCE
T ss_pred CCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEE
Confidence 2223333222223334444433333666677777764
No 198
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=31.78 E-value=47 Score=35.32 Aligned_cols=95 Identities=12% Similarity=0.106 Sum_probs=50.7
Q ss_pred HHHHhcccCCCEEEEecCcHHHHHHHHHHHHh---CCceEEEEcCC-CC----------------CchHHHHHHHHHhCC
Q 008627 446 KHAVTKIRDGDVLLTYGSSSAVEMILQHAHEL---GKQFRVVIVDS-RP----------------KHEGKLLLRRLVRKG 505 (559)
Q Consensus 446 ~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~---Gk~FrViVvES-RP----------------~~EG~~LAk~L~~~G 505 (559)
+.|+++|++||+|.+.+..+.-..++....+. =+.++++..=+ .+ ++.|.. .+++...|
T Consensus 19 eEAv~~IkdGd~V~~~g~~g~P~~L~~ALa~r~~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~~i~~G 97 (434)
T 3eh7_A 19 EEAVKHIKNGERVALSHAAGVPQSCVDALVQQADLFQNVEIYHMLCLGEGKYMAPEMAPHFRHITNFVGGN-SRKAVEEN 97 (434)
T ss_dssp HHHHTTCCTTCEEEECCGGGCCHHHHHHHHHSTTTC--CEEECCBCTTCC------------------------------
T ss_pred HHHHHhCCCcCEEEECCccCCHHHHHHHHHHhHhhcCCeEEEEeccCCchhhcChhhhCeEEEecCcCCHH-HHHHHHCC
Confidence 34566899999999998665433333333221 23466653311 11 112211 22233333
Q ss_pred -CceEEEecchHHHHhc----cccEEEEcceeeecCCceec
Q 008627 506 -LSCTYTHINAISYIIH----EVTRVFLGASSVLSNGTVCS 541 (559)
Q Consensus 506 -I~vTyI~DsAvs~iM~----~VdkVlLGAdaIlaNGsVvN 541 (559)
++..-+..+.+..++. .+|.+|+.+...-.+|.+.-
T Consensus 98 ~~~~~p~~ls~~~~~~~~g~~~~DVAli~as~~D~~Gn~s~ 138 (434)
T 3eh7_A 98 RADFIPVFFYEVPSMIRKDILHIDVAIVQLSMPDENGYCSF 138 (434)
T ss_dssp CTTCCCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTSEEEC
T ss_pred CccccChhHHHHHHHHHhCCCCCcEEEEEEecCCCCCCEEe
Confidence 3333345666776666 48999999999999999864
No 199
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=31.75 E-value=98 Score=30.21 Aligned_cols=95 Identities=16% Similarity=0.136 Sum_probs=50.9
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------chHHHHhc--cccE
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EVTR 525 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D--------sAvs~iM~--~Vdk 525 (559)
.+++|.|.+..+..++..+.+.|. +|++. .|.+.+..+...+...|+.+.++.. ..+-..+. ++..
T Consensus 71 ~v~~~~g~t~al~~~~~~~~~~gd--~vl~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~ 146 (396)
T 2ch1_A 71 TMCVSGSAHAGMEAMLSNLLEEGD--RVLIA--VNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKC 146 (396)
T ss_dssp EEEESSCHHHHHHHHHHHHCCTTC--EEEEE--ESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSE
T ss_pred EEEECCcHHHHHHHHHHHhcCCCC--eEEEE--cCCcccHHHHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCE
Confidence 355666666666555555443333 45554 3556665433445567888777752 12333333 3556
Q ss_pred EEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 526 VlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
|++ .+.--..|.++. -..|+-+|+++++.
T Consensus 147 v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~ 175 (396)
T 2ch1_A 147 LFL-THGDSSSGLLQP---LEGVGQICHQHDCL 175 (396)
T ss_dssp EEE-ESEETTTTEECC---CTTHHHHHHHTTCE
T ss_pred EEE-ECCCCCCceecC---HHHHHHHHHHcCCE
Confidence 655 333344566555 23466677777765
No 200
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=31.75 E-value=24 Score=29.20 Aligned_cols=56 Identities=29% Similarity=0.316 Sum_probs=36.0
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCC-CCchHHHHHHHHHhC--CCceEEEec
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR-PKHEGKLLLRRLVRK--GLSCTYTHI 513 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESR-P~~EG~~LAk~L~~~--GI~vTyI~D 513 (559)
|..|.+.....-. +....+....+.++++|.. |...|..+++.|.+. .+++.+++.
T Consensus 27 g~~v~~~~~~~~a---~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~ 85 (143)
T 3jte_A 27 GNEVLTASSSTEG---LRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIILTG 85 (143)
T ss_dssp TCEEEEESSHHHH---HHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEEC
T ss_pred CceEEEeCCHHHH---HHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEEC
Confidence 4455555544443 3333333467888888854 788999999999875 456666654
No 201
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=31.68 E-value=1.5e+02 Score=29.89 Aligned_cols=108 Identities=19% Similarity=0.280 Sum_probs=57.3
Q ss_pred HHhcccC-CCEEEEe-cCcHHHHHHHHHHH---H-h-C-CceEEEEc-CCC---CCc-hHHHHHHHHHhCCCceE-EEec
Q 008627 448 AVTKIRD-GDVLLTY-GSSSAVEMILQHAH---E-L-G-KQFRVVIV-DSR---PKH-EGKLLLRRLVRKGLSCT-YTHI 513 (559)
Q Consensus 448 Aa~~I~d-GdvILT~-g~SstV~~iL~~A~---e-~-G-k~FrViVv-ESR---P~~-EG~~LAk~L~~~GI~vT-yI~D 513 (559)
..++|.. +-++|-- +-..++++.++.|+ + . | .-+++.|. |.+ |.. +-.+.++.|.+.|+.|- |+.|
T Consensus 65 ~~~~i~~~~~~~lpNTag~~ta~eAv~~a~lare~~~~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf~Vlpy~~d 144 (265)
T 1wv2_A 65 LLDVIPPDRYTILPNTAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSD 144 (265)
T ss_dssp -----CTTTSEEEEECTTCCSHHHHHHHHHHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECS
T ss_pred HHhhhhhcCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCCeEEEEeecCccccCcCHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3445654 5666643 44456666666554 3 1 2 33566666 554 322 44566899999999988 6765
Q ss_pred c-hHHHHhcc--ccEEEE-cceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 514 N-AISYIIHE--VTRVFL-GASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 514 s-Avs~iM~~--VdkVlL-GAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+ .++.-+.+ ++.|+- |+. |-.+=++.| -..|-.+.+..++||
T Consensus 145 d~~~akrl~~~G~~aVmPlg~p-IGsG~Gi~~---~~lI~~I~e~~~vPV 190 (265)
T 1wv2_A 145 DPIIARQLAEIGCIAVMPLAGL-IGSGLGICN---PYNLRIILEEAKVPV 190 (265)
T ss_dssp CHHHHHHHHHSCCSEEEECSSS-TTCCCCCSC---HHHHHHHHHHCSSCB
T ss_pred CHHHHHHHHHhCCCEEEeCCcc-CCCCCCcCC---HHHHHHHHhcCCCCE
Confidence 4 44455543 555544 321 111101222 345667777778886
No 202
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*
Probab=31.65 E-value=95 Score=30.72 Aligned_cols=102 Identities=9% Similarity=0.096 Sum_probs=58.4
Q ss_pred cCCCEEEEecCcHHHHH-HHHHHHHh-CCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec----chHHHHhccccEE
Q 008627 453 RDGDVLLTYGSSSAVEM-ILQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----NAISYIIHEVTRV 526 (559)
Q Consensus 453 ~dGdvILT~g~SstV~~-iL~~A~e~-Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D----sAvs~iM~~VdkV 526 (559)
-.|.+||..|-++.+-. +.+...+. |. .+|++++-.+ .....+...|...++.+. ..| ..+..++..+|.|
T Consensus 19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~-~~V~~~~r~~-~~~~~~~~~~~~~~v~~~-~~Dl~d~~~l~~~~~~~D~V 95 (344)
T 2gn4_A 19 LDNQTILITGGTGSFGKCFVRKVLDTTNA-KKIIVYSRDE-LKQSEMAMEFNDPRMRFF-IGDVRDLERLNYALEGVDIC 95 (344)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHHCCC-SEEEEEESCH-HHHHHHHHHHCCTTEEEE-ECCTTCHHHHHHHTTTCSEE
T ss_pred hCCCEEEEECCCcHHHHHHHHHHHhhCCC-CEEEEEECCh-hhHHHHHHHhcCCCEEEE-ECCCCCHHHHHHHHhcCCEE
Confidence 34678999998877754 44444454 42 3677765432 222344555543344322 223 4566777888888
Q ss_pred EEcceeeec--------CCceecccchHHHHHHHhhCCC
Q 008627 527 FLGASSVLS--------NGTVCSRVGTACVAMVAYGFHI 557 (559)
Q Consensus 527 lLGAdaIla--------NGsVvNKvGT~~IALaAk~~~V 557 (559)
|--|-.... .-.-+|-.||..++-+|..+++
T Consensus 96 ih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v 134 (344)
T 2gn4_A 96 IHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAI 134 (344)
T ss_dssp EECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 766532110 0011366788999988888775
No 203
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=31.54 E-value=1.5e+02 Score=30.88 Aligned_cols=96 Identities=15% Similarity=0.086 Sum_probs=51.7
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHH-HHH-HHHhCCCceEEEecc---hHHHHhcc-c-cEEEE
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LLR-RLVRKGLSCTYTHIN---AISYIIHE-V-TRVFL 528 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~-LAk-~L~~~GI~vTyI~Ds---Avs~iM~~-V-dkVlL 528 (559)
+.|++-+.+..+..+|....+.| -+|++.+ |.+.|.. +.+ .+...|+.++++... .+...+.+ . ..|++
T Consensus 131 ~~v~~~sG~~Ai~~al~~l~~~G--d~Vi~~~--~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~tv~lV~l 206 (445)
T 1qgn_A 131 STLLMASGMCASTVMLLALVPAG--GHIVTTT--DCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNLFFT 206 (445)
T ss_dssp EEEEESCHHHHHHHHHHHHSCSS--CEEEEET--TSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHSCEEEEEE
T ss_pred cEEEeCCHHHHHHHHHHHHhCCC--CEEEEcC--CCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccCCCCEEEE
Confidence 44555444444444444333334 3666655 6776643 233 356679999998643 44444443 3 44444
Q ss_pred cceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 529 GAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
...--..|.+.. -..|+-+|+++|++|
T Consensus 207 -e~p~NptG~v~d---l~~I~~la~~~g~~l 233 (445)
T 1qgn_A 207 -ESPTNPFLRCVD---IELVSKLCHEKGALV 233 (445)
T ss_dssp -ESSCTTTCCCCC---HHHHHHHHHHTTCEE
T ss_pred -eCCCCCCCcccC---HHHHHHHHHHcCCEE
Confidence 222223344433 346778889998864
No 204
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=31.53 E-value=2e+02 Score=27.50 Aligned_cols=76 Identities=12% Similarity=0.135 Sum_probs=50.0
Q ss_pred CCCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhc------
Q 008627 454 DGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH------ 521 (559)
Q Consensus 454 dGdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~------ 521 (559)
.|.+||+.|-++-+- .+.+...++| .+|++++.|.......++.+|...|..+.++. | ..+..++.
T Consensus 28 ~~k~~lVTGas~GIG~aia~~la~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 105 (280)
T 4da9_A 28 ARPVAIVTGGRRGIGLGIARALAASG--FDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEF 105 (280)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCC--CeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 356777777776664 4444445544 58888886665566677888888888877763 2 33444444
Q ss_pred -cccEEEEcce
Q 008627 522 -EVTRVFLGAS 531 (559)
Q Consensus 522 -~VdkVlLGAd 531 (559)
.+|.||--|-
T Consensus 106 g~iD~lvnnAg 116 (280)
T 4da9_A 106 GRIDCLVNNAG 116 (280)
T ss_dssp SCCCEEEEECC
T ss_pred CCCCEEEECCC
Confidence 5788877664
No 205
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=31.51 E-value=76 Score=31.12 Aligned_cols=93 Identities=14% Similarity=0.063 Sum_probs=51.8
Q ss_pred EEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc--------hHHHHhc--cccEEEE
Q 008627 459 LTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH--EVTRVFL 528 (559)
Q Consensus 459 LT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds--------Avs~iM~--~VdkVlL 528 (559)
+|-|-+..+..++..+.+.| -+|++.+ |.+-|..+...+...|+++.++... ++-..+. ++..|++
T Consensus 69 ~~~sgt~al~~~~~~~~~~g--d~Vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~ 144 (411)
T 3nnk_A 69 VDGTSRAGIEAILVSAIRPG--DKVLVPV--FGRFGHLLCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLT 144 (411)
T ss_dssp EESCHHHHHHHHHHHHCCTT--CEEEEEE--CSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEE
T ss_pred ECCCcHHHHHHHHHHhcCCC--CEEEEec--CCchHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEE
Confidence 33333445555555554333 3666654 5666655666667789988887632 3444443 4666665
Q ss_pred cceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 529 GAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
- ..-...|.+.. -..|+-+|++||+.|
T Consensus 145 ~-~~~nptG~~~~---l~~i~~l~~~~~~~l 171 (411)
T 3nnk_A 145 V-QGDTSTTMLQP---LAELGEICRRYDALF 171 (411)
T ss_dssp E-SEETTTTEECC---CTTHHHHHHHHTCEE
T ss_pred e-CCCCCcceecc---HHHHHHHHHHcCCEE
Confidence 3 22234454443 235777788888753
No 206
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=31.37 E-value=56 Score=30.91 Aligned_cols=91 Identities=10% Similarity=0.095 Sum_probs=45.4
Q ss_pred CEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe---cchHHHHhcc-ccEEEEcc
Q 008627 456 DVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH---INAISYIIHE-VTRVFLGA 530 (559)
Q Consensus 456 dvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~---DsAvs~iM~~-VdkVlLGA 530 (559)
.+||..| ++.+- .++..+.++| ++|+++.-++.. + ..++.+.... ...+..++.. +|.||--|
T Consensus 4 ~~ilVtG-aG~iG~~l~~~L~~~g--~~V~~~~r~~~~--------~-~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a 71 (286)
T 3gpi_A 4 SKILIAG-CGDLGLELARRLTAQG--HEVTGLRRSAQP--------M-PAGVQTLIADVTRPDTLASIVHLRPEILVYCV 71 (286)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHTT--CCEEEEECTTSC--------C-CTTCCEEECCTTCGGGCTTGGGGCCSEEEECH
T ss_pred CcEEEEC-CCHHHHHHHHHHHHCC--CEEEEEeCCccc--------c-ccCCceEEccCCChHHHHHhhcCCCCEEEEeC
Confidence 3566667 46554 3333444444 456655433322 0 1333332221 1234445555 78777655
Q ss_pred eeeecC---CceecccchHHHHHHHhhCCCC
Q 008627 531 SSVLSN---GTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 531 daIlaN---GsVvNKvGT~~IALaAk~~~VP 558 (559)
-....+ -.-+|-.||..+.-+|+..++.
T Consensus 72 ~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~ 102 (286)
T 3gpi_A 72 AASEYSDEHYRLSYVEGLRNTLSALEGAPLQ 102 (286)
T ss_dssp HHHHHC-----CCSHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 211111 1124677899999888877753
No 207
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=31.20 E-value=2.3e+02 Score=26.55 Aligned_cols=77 Identities=12% Similarity=0.107 Sum_probs=49.4
Q ss_pred CCCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhc------
Q 008627 454 DGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH------ 521 (559)
Q Consensus 454 dGdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~------ 521 (559)
.|.+||..|-++-+- .+.+...++| .+|+++..+.......++.+|.+.|-.+.++. | ..+..++.
T Consensus 7 ~~k~vlVTGas~GIG~aia~~la~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (259)
T 3edm_A 7 TNRTIVVAGAGRDIGRACAIRFAQEG--ANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKF 84 (259)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 356777777776664 4444445544 68888876666666677888888787776653 3 23444444
Q ss_pred -cccEEEEccee
Q 008627 522 -EVTRVFLGASS 532 (559)
Q Consensus 522 -~VdkVlLGAda 532 (559)
++|.+|--|-.
T Consensus 85 g~id~lv~nAg~ 96 (259)
T 3edm_A 85 GEIHGLVHVAGG 96 (259)
T ss_dssp CSEEEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 57888776643
No 208
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=31.16 E-value=2.4e+02 Score=29.14 Aligned_cols=101 Identities=14% Similarity=0.104 Sum_probs=52.3
Q ss_pred CCCEEEEecCcHHHHHHHHHHHH--------hC----CceEEEEcCCCCCchHHHHHHHHHhCCC-ceEEEecc------
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHE--------LG----KQFRVVIVDSRPKHEGKLLLRRLVRKGL-SCTYTHIN------ 514 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e--------~G----k~FrViVvESRP~~EG~~LAk~L~~~GI-~vTyI~Ds------ 514 (559)
.++.++|-|-|..+..+|..+.+ .| .+..|++.+ +.+-...-+-.+...|. .+.+|...
T Consensus 151 ~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~--~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d 228 (504)
T 2okj_A 151 DGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSE--QSHYSIKKAGAALGFGTDNVILIKCNERGKII 228 (504)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEET--TSCTHHHHHHHHTTSCGGGEEEECBCTTSCBC
T ss_pred CCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECC--cchHHHHHHHHHcCCCcccEEEEecCCCCCCC
Confidence 45678888878777766666643 35 234666654 33333322222323344 78777632
Q ss_pred --hHHHHhcc------ccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 515 --AISYIIHE------VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 515 --Avs~iM~~------VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
++-..+.+ ..++|+....-...|.+. . -..|+-+|++||+.|
T Consensus 229 ~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~-~--l~~I~~la~~~g~~l 278 (504)
T 2okj_A 229 PADFEAKILEAKQKGYVPFYVNATAGTTVYGAFD-P--IQEIADICEKYNLWL 278 (504)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBC-C--HHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcC-C--HHHHHHHHHHcCCEE
Confidence 33333433 234444432223334432 2 246777888888753
No 209
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*
Probab=31.16 E-value=1.8e+02 Score=27.89 Aligned_cols=100 Identities=16% Similarity=0.138 Sum_probs=50.0
Q ss_pred CEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCc-----hHHHHHHHHHh-CCCceEEE-ec----chHHHHhc--
Q 008627 456 DVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKH-----EGKLLLRRLVR-KGLSCTYT-HI----NAISYIIH-- 521 (559)
Q Consensus 456 dvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~-----EG~~LAk~L~~-~GI~vTyI-~D----sAvs~iM~-- 521 (559)
.+||..|-++.+- .+...+.++| .+|++++-.+.. +....+++|.+ .+..+.++ .| .++..++.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (348)
T 1ek6_A 3 EKVLVTGGAGYIGSHTVLELLEAG--YLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKY 80 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTT--CCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC--CEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhc
Confidence 5788888887764 4444455555 567776532211 01122333332 12233333 23 34555666
Q ss_pred cccEEEEcceeeecC--------CceecccchHHHHHHHhhCCC
Q 008627 522 EVTRVFLGASSVLSN--------GTVCSRVGTACVAMVAYGFHI 557 (559)
Q Consensus 522 ~VdkVlLGAdaIlaN--------GsVvNKvGT~~IALaAk~~~V 557 (559)
++|.||--|-..... -.-+|-.||..+.-+|+..++
T Consensus 81 ~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~ 124 (348)
T 1ek6_A 81 SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGV 124 (348)
T ss_dssp CEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456665444211000 001356788888888877665
No 210
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=31.08 E-value=2e+02 Score=28.10 Aligned_cols=101 Identities=13% Similarity=0.106 Sum_probs=55.6
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc---------hHHHHhc-
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYIIH- 521 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds---------Avs~iM~- 521 (559)
+....+++|.|.+..+..++....+.|+ -+|++.+ |.+.+... .+...|+++..+... .+-..+.
T Consensus 97 ~~~~~i~~~~g~~~al~~~~~~l~~~g~-d~vl~~~--p~~~~~~~--~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~ 171 (398)
T 3ele_A 97 FNADNLYMTMGAAASLSICFRALTSDAY-DEFITIA--PYFPEYKV--FVNAAGARLVEVPADTEHFQIDFDALEERINA 171 (398)
T ss_dssp CCGGGEEEESSHHHHHHHHHHHHCCSTT-CEEEEES--SCCTHHHH--HHHHTTCEEEEECCCTTTSSCCHHHHHHTCCT
T ss_pred CChHHEEEccCHHHHHHHHHHHHcCCCC-CEEEEeC--CCchhhHH--HHHHcCCEEEEEecCCcCCcCCHHHHHHHhCc
Confidence 3445678887777777766666544341 3555543 45655433 334568888888633 2222232
Q ss_pred cccEEEEcceeeecCCceecccchHHHHHHHhh------CCCC
Q 008627 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG------FHIP 558 (559)
Q Consensus 522 ~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~------~~VP 558 (559)
++..|++- .---..|.++..---..|+-+|+. |++.
T Consensus 172 ~~~~v~~~-~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~ 213 (398)
T 3ele_A 172 HTRGVIIN-SPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIF 213 (398)
T ss_dssp TEEEEEEC-SSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCE
T ss_pred CCCEEEEc-CCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeE
Confidence 34555542 333344555554444556666776 7764
No 211
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=31.02 E-value=2.2e+02 Score=27.73 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=51.8
Q ss_pred cCC-CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc---------hHHHHhc-
Q 008627 453 RDG-DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYIIH- 521 (559)
Q Consensus 453 ~dG-dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds---------Avs~iM~- 521 (559)
... .+++|.|.+..+..++....+.| -+|++.+ |.+.+... .+...|+.+.++... .+-..+.
T Consensus 89 ~~~~~v~~~~g~~~a~~~~~~~~~~~g--d~vl~~~--p~~~~~~~--~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~ 162 (386)
T 1u08_A 89 DADSDITVTAGATEALYAAITALVRNG--DEVICFD--PSYDSYAP--AIALSGGIVKRMALQPPHFRVDWQEFAALLSE 162 (386)
T ss_dssp CTTTTEEEESSHHHHHHHHHHHHCCTT--CEEEEEE--SCCTTHHH--HHHHTTCEEEEEECCTTTCCCCHHHHHHHCCT
T ss_pred CCCCCEEEcCChHHHHHHHHHHhCCCC--CEEEEeC--CCchhHHH--HHHHcCCEEEEeecCcccCcCCHHHHHHhhcc
Confidence 344 67788777777766666553333 3566554 44555432 344568888777532 1222222
Q ss_pred cccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 522 ~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
++..|++- ..--..|.++..-=-..|+-+|++|++.
T Consensus 163 ~~~~v~l~-~p~nptG~~~~~~~l~~i~~~~~~~~~~ 198 (386)
T 1u08_A 163 RTRLVILN-TPHNPSATVWQQADFAALWQAIAGHEIF 198 (386)
T ss_dssp TEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHTTSCCE
T ss_pred cCEEEEEe-CCCCCCCccCCHHHHHHHHHHHHHcCcE
Confidence 34444442 2222334444322224566778888875
No 212
>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, structural genomics; 1.90A {Thermus thermophilus}
Probab=31.01 E-value=37 Score=30.86 Aligned_cols=69 Identities=16% Similarity=0.137 Sum_probs=48.2
Q ss_pred cCcHHHHHHHHHHHH-hC--CceEEEEcCCCCCchHH----HHHHHHHhCCCceEEEecchH-HHHhccccEEEEcce
Q 008627 462 GSSSAVEMILQHAHE-LG--KQFRVVIVDSRPKHEGK----LLLRRLVRKGLSCTYTHINAI-SYIIHEVTRVFLGAS 531 (559)
Q Consensus 462 g~SstV~~iL~~A~e-~G--k~FrViVvESRP~~EG~----~LAk~L~~~GI~vTyI~DsAv-s~iM~~VdkVlLGAd 531 (559)
|+|...+.+|++... .| ..|.|.=.-+.|+..|. ...+.|.+.||++. ..--.+ ...+.+.|.||.=.+
T Consensus 16 cRSpmAEal~~~~~~~~gl~~~~~v~SAGt~~~~~g~~~~p~a~~~l~e~Gid~s-~~ar~l~~~~~~~~DlIi~M~~ 92 (161)
T 2cwd_A 16 CRSPMAEGIFRKLLKERGLEDRFEVDSAGTGAWHVGEPMDPRARRVLEEEGAYFP-HVARRLTREDVLAYDHILVMDR 92 (161)
T ss_dssp SHHHHHHHHHHHHHHHHTCTTTEEEEEEESSCTTTTCCCCHHHHHHHHHHTCCCC-CCCCBCCHHHHHHCSEEEESSH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcEEEEecccCCCccCCCCCHHHHHHHHHcCcCcc-ccccCCCHhHhccCCEEEECCh
Confidence 578899999998654 35 36899988888877664 45778888999987 433233 234557888876544
No 213
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=30.94 E-value=79 Score=31.86 Aligned_cols=96 Identities=16% Similarity=0.123 Sum_probs=52.1
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH-HHHHH-HHhCCCceEEEecc--hHHHHhc-cccEEEEcc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLRR-LVRKGLSCTYTHIN--AISYIIH-EVTRVFLGA 530 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~-~LAk~-L~~~GI~vTyI~Ds--Avs~iM~-~VdkVlLGA 530 (559)
++|+|-|-+..+..+|..+.+.| -+|++.+ |.+.+. ..... +...|+.+.++... .+-..+. ++..|++ .
T Consensus 73 ~~~~~~~gt~a~~~al~~l~~~g--d~vi~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~i~~~~~~v~~-~ 147 (412)
T 2cb1_A 73 EAVVLASGQAATFAALLALLRPG--DEVVAAK--GLFGQTIGLFGQVLSLMGVTVRYVDPEPEAVREALSAKTRAVFV-E 147 (412)
T ss_dssp EEEEESSHHHHHHHHHHTTCCTT--CEEEEET--TCCHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHCCTTEEEEEE-E
T ss_pred cEEEECCHHHHHHHHHHHHhCCC--CEEEEeC--CCchhHHHHHHHHHHHcCCEEEEECCCHHHHHHHhccCCeEEEE-e
Confidence 56777665555555555443333 3566654 556543 33333 45579999888642 3333343 3344444 2
Q ss_pred eeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 531 daIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
..--..|.+.. -..|+-+|++||+.+
T Consensus 148 ~~~n~~G~~~~---l~~i~~l~~~~~~~l 173 (412)
T 2cb1_A 148 TVANPALLVPD---LEALATLAEEAGVAL 173 (412)
T ss_dssp SSCTTTCCCCC---HHHHHHHHHHHTCEE
T ss_pred CCCCCCccccc---HHHHHHHHHHcCCEE
Confidence 22233455543 456777888888753
No 214
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=30.56 E-value=34 Score=34.33 Aligned_cols=60 Identities=22% Similarity=0.342 Sum_probs=43.1
Q ss_pred cCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEccee
Q 008627 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (559)
Q Consensus 453 ~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAda 532 (559)
..|+.|...|+=..+.+++. +.+.++|+|=.|.. |. .++.+..++++++|.||+=+.+
T Consensus 139 ~~g~kV~vIG~fP~i~~~~~------~~~~l~V~E~~p~~------------g~----~p~~~~~~~lp~~D~viiTgst 196 (270)
T 3l5o_A 139 VKGKKVGVVGHFPHLESLLE------PICDLSILEWSPEE------------GD----YPLPASEFILPECDYVYITCAS 196 (270)
T ss_dssp TTTSEEEEESCCTTHHHHHT------TTSEEEEEESSCCT------------TC----EEGGGHHHHGGGCSEEEEETHH
T ss_pred cCCCEEEEECCchhHHHHHh------cCCCEEEEECCCCC------------CC----CChhHHHHhhccCCEEEEEeeh
Confidence 35789999999766554332 34688899988842 22 4788888899999998887665
Q ss_pred ee
Q 008627 533 VL 534 (559)
Q Consensus 533 Il 534 (559)
+.
T Consensus 197 lv 198 (270)
T 3l5o_A 197 VV 198 (270)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 215
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=30.54 E-value=1.1e+02 Score=29.87 Aligned_cols=97 Identities=13% Similarity=0.132 Sum_probs=48.9
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------------chHHHHh
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------------NAISYII 520 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D--------------sAvs~iM 520 (559)
..+++|-|.+..+..++......| -+|++. .|.+.+.. ..+...|..+..+.. ..+-..+
T Consensus 103 ~~i~~~~g~~~a~~~~~~~l~~~g--d~vl~~--~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l 176 (407)
T 3nra_A 103 DGLIITPGTQGALFLAVAATVARG--DKVAIV--QPDYFANR--KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAF 176 (407)
T ss_dssp TSEEEESHHHHHHHHHHHTTCCTT--CEEEEE--ESCCTHHH--HHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHH
T ss_pred CcEEEeCCcHHHHHHHHHHhCCCC--CEEEEc--CCcccchH--HHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHH
Confidence 466777666666655555443323 245543 35555443 233345777666653 2233333
Q ss_pred c-cccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 521 H-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 521 ~-~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
. +...|++ .+.--..|.++..---..|+-+|++|++.
T Consensus 177 ~~~~~~v~~-~~p~nptG~~~~~~~l~~i~~~~~~~~~~ 214 (407)
T 3nra_A 177 KAGARVFLF-SNPNNPAGVVYSAEEIGQIAALAARYGAT 214 (407)
T ss_dssp HTTCCEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCE
T ss_pred hhCCcEEEE-cCCCCCCCcccCHHHHHHHHHHHHHcCCE
Confidence 3 3455544 22223345555544345566677877764
No 216
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=30.54 E-value=1.1e+02 Score=29.11 Aligned_cols=18 Identities=17% Similarity=-0.057 Sum_probs=12.8
Q ss_pred cccchHHHHHHHhhCCCC
Q 008627 541 SRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 541 NKvGT~~IALaAk~~~VP 558 (559)
|--||..++-+++..+++
T Consensus 82 ~v~~t~~l~~~~~~~~~~ 99 (298)
T 4b4o_A 82 RLETTQLLAKAITKAPQP 99 (298)
T ss_dssp HHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 456888888777776654
No 217
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=30.53 E-value=1.3e+02 Score=29.78 Aligned_cols=53 Identities=19% Similarity=0.232 Sum_probs=33.8
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY 510 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTy 510 (559)
.+..|++||.+|.+.+=..++..|+..|- +|++++..+. -.++++ +.|.+.++
T Consensus 165 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga--~Vi~~~~~~~--~~~~~~---~lGa~~~~ 217 (352)
T 1e3j_A 165 GVQLGTTVLVIGAGPIGLVSVLAAKAYGA--FVVCTARSPR--RLEVAK---NCGADVTL 217 (352)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHH--HHHHHH---HTTCSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC--EEEEEcCCHH--HHHHHH---HhCCCEEE
Confidence 47889999999975444556666666564 5888876532 233444 45666444
No 218
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=30.30 E-value=1.6e+02 Score=27.56 Aligned_cols=80 Identities=14% Similarity=0.156 Sum_probs=49.0
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhC---CceEEEEcC---CC----CCchHHHHHHHHHh-CCCceEEEecchH-------
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELG---KQFRVVIVD---SR----PKHEGKLLLRRLVR-KGLSCTYTHINAI------- 516 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~G---k~FrViVvE---SR----P~~EG~~LAk~L~~-~GI~vTyI~DsAv------- 516 (559)
++ +|-+++.+|...++....+.+ .+.+|+-+| += |...-..+.+.|.+ .+++..++++...
T Consensus 29 ~~-~i~ls~G~T~~~~~~~L~~~~~~~~~v~v~~ldEr~gv~~~~~~sn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 107 (234)
T 2ri0_A 29 AK-TLGLATGSTPLELYKEIRESHLDFSDMVSINLDEYVGLSADDKQSYAYFMKQNLFAAKPFKKSYLPNGLAADLAKET 107 (234)
T ss_dssp CC-EEEECCSSTTHHHHHHHHTSCCCCTTCEEEESEEETTCCTTSTTSHHHHHHHHTTTTSCCSEEECCCTTCSCHHHHH
T ss_pred CC-EEEEcCCCCHHHHHHHHHhcCCChhheEEEeCeeecCCCCCChHHHHHHHHHHHhccCCCcHhhcCCCCCCCHHHHH
Confidence 45 777888888877777765422 456777666 22 23333455666665 4888888765421
Q ss_pred ---HHHhc--cccEEEEcceeeecCCc
Q 008627 517 ---SYIIH--EVTRVFLGASSVLSNGT 538 (559)
Q Consensus 517 ---s~iM~--~VdkVlLGAdaIlaNGs 538 (559)
...++ .+|.+|||-- .||.
T Consensus 108 ~~y~~~i~~~~~Dl~llGiG---~dgh 131 (234)
T 2ri0_A 108 EYYDQILAQYPIDLQILGIG---RNAH 131 (234)
T ss_dssp HHHHHHHHHSCCSEEEECCC---TTSC
T ss_pred HHHHHHHHhCCCCEEEEccC---CCCC
Confidence 11222 5899999964 5554
No 219
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=30.27 E-value=98 Score=31.20 Aligned_cols=95 Identities=18% Similarity=0.167 Sum_probs=51.6
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHH-H-HHHHhCCCceEEEec--chHHHHhcc-ccEEEEcc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-L-RRLVRKGLSCTYTHI--NAISYIIHE-VTRVFLGA 530 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~L-A-k~L~~~GI~vTyI~D--sAvs~iM~~-VdkVlLGA 530 (559)
+.|++-+.+..+..+|. ..+.| -+|++.+ |.+.|... . ..+...|+.++++.. ..+-..+.+ +..|++ .
T Consensus 72 ~~i~~~sGt~a~~~al~-~~~~g--d~Vi~~~--~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~l~~~i~~~t~lv~~-~ 145 (393)
T 1n8p_A 72 YGLAFSSGSATTATILQ-SLPQG--SHAVSIG--DVYGGTHRYFTKVANAHGVETSFTNDLLNDLPQLIKENTKLVWI-E 145 (393)
T ss_dssp EEEEESCHHHHHHHHHH-TSCSS--CEEEEES--SCCHHHHHHHHHTSTTTCSCCEEESSHHHHHHHHSCSSEEEEEE-C
T ss_pred cEEEECChHHHHHHHHH-HcCCC--CEEEEeC--CCchHHHHHHHHHHHHcCcEEEEeCCChHHHHHhcccCceEEEE-E
Confidence 45555544555555555 43333 3566654 67776532 2 245567999999874 344444443 334444 2
Q ss_pred eeeecCCceecccchHHHHHHHhhC----CCCC
Q 008627 531 SSVLSNGTVCSRVGTACVAMVAYGF----HIPV 559 (559)
Q Consensus 531 daIlaNGsVvNKvGT~~IALaAk~~----~VPV 559 (559)
..--..|.++. -..|+-+|+++ |++|
T Consensus 146 ~~~nptG~~~~---l~~i~~la~~~~~~~~~~l 175 (393)
T 1n8p_A 146 TPTNPTLKVTD---IQKVADLIKKHAAGQDVIL 175 (393)
T ss_dssp SSCTTTCCCCC---HHHHHHHHHHHTTTTTCEE
T ss_pred CCCCCcceecC---HHHHHHHHHHhCCCCCCEE
Confidence 22233455443 35577778888 7753
No 220
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Probab=30.23 E-value=1.6e+02 Score=29.34 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=30.8
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHH
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRL 501 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L 501 (559)
.+..|++||.+|.+.+=..++..|+..|-. +|++++..+.. .+++++|
T Consensus 187 ~~~~g~~VlV~GaG~vG~~avqla~~~Ga~-~Vi~~~~~~~~--~~~~~~l 234 (373)
T 2fzw_A 187 KLEPGSVCAVFGLGGVGLAVIMGCKVAGAS-RIIGVDINKDK--FARAKEF 234 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCS-EEEEECSCGGG--HHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEcCCHHH--HHHHHHc
Confidence 477899999999654435566666665532 78888876543 3344443
No 221
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=30.12 E-value=1.5e+02 Score=26.25 Aligned_cols=91 Identities=11% Similarity=0.030 Sum_probs=53.2
Q ss_pred EEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe--cchHHHHhccccEEEEcceee
Q 008627 457 VLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--INAISYIIHEVTRVFLGASSV 533 (559)
Q Consensus 457 vILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~--DsAvs~iM~~VdkVlLGAdaI 533 (559)
+||..|-++-+- .+++.+.++| ++|+++.-++.. +..|. .++.+.... |... ..+..+|.||.-|-..
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~-----~~~~~-~~~~~~~~D~~d~~~-~~~~~~d~vi~~ag~~ 72 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRG--HEVTAIVRNAGK-----ITQTH-KDINILQKDIFDLTL-SDLSDQNVVVDAYGIS 72 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCSHH-----HHHHC-SSSEEEECCGGGCCH-HHHTTCSEEEECCCSS
T ss_pred eEEEEcCCchhHHHHHHHHHhCC--CEEEEEEcCchh-----hhhcc-CCCeEEeccccChhh-hhhcCCCEEEECCcCC
Confidence 588888877664 4455555555 678777655421 22333 455433322 2222 5677888888766442
Q ss_pred ecCCceecccchHHHHHHHhhCCC
Q 008627 534 LSNGTVCSRVGTACVAMVAYGFHI 557 (559)
Q Consensus 534 laNGsVvNKvGT~~IALaAk~~~V 557 (559)
. ...-+|-.||..+.-+|+..++
T Consensus 73 ~-~~~~~~~~~~~~l~~a~~~~~~ 95 (221)
T 3ew7_A 73 P-DEAEKHVTSLDHLISVLNGTVS 95 (221)
T ss_dssp T-TTTTSHHHHHHHHHHHHCSCCS
T ss_pred c-cccchHHHHHHHHHHHHHhcCC
Confidence 2 2234577788888888877654
No 222
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=30.09 E-value=1.2e+02 Score=29.49 Aligned_cols=99 Identities=15% Similarity=0.099 Sum_probs=51.2
Q ss_pred cCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc----------hHHHHhc-
Q 008627 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH- 521 (559)
Q Consensus 453 ~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds----------Avs~iM~- 521 (559)
....+++|.|-+..+..++..+.+.|. +|++. .|.+.+... .+...|+.+..+... ++-..+.
T Consensus 89 ~~~~v~~~~g~~~a~~~~~~~~~~~gd--~vl~~--~~~~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 162 (388)
T 1j32_A 89 GADNILVTNGGKQSIFNLMLAMIEPGD--EVIIP--APFWVSYPE--MVKLAEGTPVILPTTVETQFKVSPEQIRQAITP 162 (388)
T ss_dssp CGGGEEEESHHHHHHHHHHHHHCCTTC--EEEEE--SSCCTHHHH--HHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCT
T ss_pred ChhhEEEcCCHHHHHHHHHHHhcCCCC--EEEEc--CCCChhHHH--HHHHcCCEEEEecCCcccCCCCCHHHHHHhcCc
Confidence 334677887777777766666544343 55554 345555433 234468887777532 1222222
Q ss_pred cccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 522 ~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
++..|++ ...--..|.++..-=-..|+-+|++||+.
T Consensus 163 ~~~~v~~-~~p~nptG~~~~~~~l~~i~~~~~~~~~~ 198 (388)
T 1j32_A 163 KTKLLVF-NTPSNPTGMVYTPDEVRAIAQVAVEAGLW 198 (388)
T ss_dssp TEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCE
T ss_pred CceEEEE-eCCCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 2333443 22222235444332234566677877765
No 223
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=30.05 E-value=1.1e+02 Score=30.92 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=32.0
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHH
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRL 501 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L 501 (559)
.+..|++||.+|.+.+=..++..|+..|- +||+++..+. -.+++++|
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga--~Vi~~~~~~~--~~~~a~~l 237 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGA--HVVAFTTSEA--KREAAKAL 237 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESSGG--GHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHc
Confidence 47789999999986544566666766554 6998887654 34455554
No 224
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=29.79 E-value=1.3e+02 Score=28.15 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=30.1
Q ss_pred HHhCCceEEEEcCCCCCc--hHHHHHHHHHhCCCceEEEe-cchHHHHhc
Q 008627 475 HELGKQFRVVIVDSRPKH--EGKLLLRRLVRKGLSCTYTH-INAISYIIH 521 (559)
Q Consensus 475 ~e~Gk~FrViVvESRP~~--EG~~LAk~L~~~GI~vTyI~-DsAvs~iM~ 521 (559)
.++|+.. |+++..-|.. -|..+++.|.+.||+|.+|+ .+++.++..
T Consensus 91 ~~~g~~V-~~l~~GDP~i~~~~~~l~~~~~~~gi~v~viPGiSs~~aa~a 139 (232)
T 2qbu_A 91 LEDGRDV-AFITLGDPSIYSTFSYLQQRIEDMGFKTEMVPGVTSFTACAA 139 (232)
T ss_dssp HHTTCCE-EEEESBCTTBSCSHHHHHHHHHHTTCCEEEECCCCHHHHHHH
T ss_pred HHCCCeE-EEEeCCCCccchhHHHHHHHHHHCCCcEEEeCCccHHHHHHH
Confidence 3445543 4555677765 45566788888888888887 566665544
No 225
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2
Probab=29.63 E-value=1.6e+02 Score=27.24 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=46.2
Q ss_pred CCCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhc------
Q 008627 454 DGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH------ 521 (559)
Q Consensus 454 dGdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~------ 521 (559)
.|.+||..|-|+-+- .+.+...++| .+|++++-+.......+..+|.+.|..+.++. | ..+..++.
T Consensus 20 ~~k~vlItGasggiG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 97 (274)
T 1ja9_A 20 AGKVALTTGAGRGIGRGIAIELGRRG--ASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF 97 (274)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 356788888876664 4445555555 57887765343344566778887787777663 3 34444554
Q ss_pred -cccEEEEcc
Q 008627 522 -EVTRVFLGA 530 (559)
Q Consensus 522 -~VdkVlLGA 530 (559)
.+|.||--|
T Consensus 98 ~~~d~vi~~A 107 (274)
T 1ja9_A 98 GGLDFVMSNS 107 (274)
T ss_dssp SCEEEEECCC
T ss_pred CCCCEEEECC
Confidence 566666544
No 226
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=29.53 E-value=2e+02 Score=27.34 Aligned_cols=76 Identities=14% Similarity=0.154 Sum_probs=50.4
Q ss_pred CCCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhc------
Q 008627 454 DGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH------ 521 (559)
Q Consensus 454 dGdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~------ 521 (559)
.|.+||+.|-++-+- .+.+...++| .+|++++.+.......++.+|.+.|..+.++. | ..+..++.
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~G--~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 107 (271)
T 3v2g_A 30 AGKTAFVTGGSRGIGAAIAKRLALEG--AAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEAL 107 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 467788887776664 4444445544 67888887766666778888988888877663 3 23344444
Q ss_pred -cccEEEEcce
Q 008627 522 -EVTRVFLGAS 531 (559)
Q Consensus 522 -~VdkVlLGAd 531 (559)
.+|.+|--|-
T Consensus 108 g~iD~lvnnAg 118 (271)
T 3v2g_A 108 GGLDILVNSAG 118 (271)
T ss_dssp SCCCEEEECCC
T ss_pred CCCcEEEECCC
Confidence 5788877663
No 227
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=29.46 E-value=1.6e+02 Score=29.94 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=31.5
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHH
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRL 501 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L 501 (559)
.+..|++||++|-+.+=..++.-|+..|- -+||+++..+ +-.+++++|
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~--~~~~~~~~l 257 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGA-SKVILSEPSE--VRRNLAKEL 257 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCH--HHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCH--HHHHHHHHc
Confidence 47789999999985444556666665442 1888888765 333455554
No 228
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=29.38 E-value=71 Score=35.12 Aligned_cols=63 Identities=22% Similarity=0.187 Sum_probs=44.7
Q ss_pred HhcccCCCEEEEecCcHHHHHHHHHHHH-----h--C----------------------------CceEEEEcCCCCCch
Q 008627 449 VTKIRDGDVLLTYGSSSAVEMILQHAHE-----L--G----------------------------KQFRVVIVDSRPKHE 493 (559)
Q Consensus 449 a~~I~dGdvILT~g~SstV~~iL~~A~e-----~--G----------------------------k~FrViVvESRP~~E 493 (559)
..++++|.++.||+....|...|..|-- . + ....|+|+-+ +.-
T Consensus 198 ~~~~~~g~~~~t~~~~~~vr~~l~~aGf~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGg--Gia 275 (689)
T 3pvc_A 198 ARMTRPGGTFSTFTAAGFVRRGLQQAGFNVTKVKGFGQKREMLTGTLPQQIHAPTAPWYHRPAATRCDDIAIIGG--GIV 275 (689)
T ss_dssp HHHEEEEEEEEESCCCHHHHHHHHHTTCEEEEEECSSSSCEEEEEECCSCCCCCCCGGGCCCCCSCCSSEEEECC--SHH
T ss_pred HHHhCCCCEEEeccCcHHHHHHHHhCCeEEEeccCCCccccccccccccccccccCCCccCcccCCCCCEEEECC--cHH
Confidence 3467889999999999999988887620 0 0 0123444433 234
Q ss_pred HHHHHHHHHhCCCceEEEec
Q 008627 494 GKLLLRRLVRKGLSCTYTHI 513 (559)
Q Consensus 494 G~~LAk~L~~~GI~vTyI~D 513 (559)
|...|..|++.|++|+++--
T Consensus 276 GlsaA~~La~~G~~V~vlEk 295 (689)
T 3pvc_A 276 SALTALALQRRGAVVTLYCA 295 (689)
T ss_dssp HHHHHHHHHTTTCCEEEEES
T ss_pred HHHHHHHHHHCCCcEEEEeC
Confidence 77889999999999999964
No 229
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=29.36 E-value=1.6e+02 Score=29.22 Aligned_cols=96 Identities=15% Similarity=0.087 Sum_probs=51.6
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHH-HHHH-HhCCCceEEEecchHH---HHhc-cccEEEEc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRL-VRKGLSCTYTHINAIS---YIIH-EVTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~L-Ak~L-~~~GI~vTyI~DsAvs---~iM~-~VdkVlLG 529 (559)
+.|++-+-+..+..+|..+.+.| -+|++. .|.+.+... ++.+ ...|+.+.++....+. ..+. ++..|++
T Consensus 81 ~~i~~~sG~~a~~~~l~~~~~~g--d~vi~~--~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~- 155 (398)
T 2rfv_A 81 AGLATASGISAITTTLLTLCQQG--DHIVSA--SAIYGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAAMRPETKVVYI- 155 (398)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEE--SSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTTEEEEEE-
T ss_pred cEEEECCHHHHHHHHHHHHhCCC--CEEEEc--CCCcccHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhcCCCCeEEEE-
Confidence 55666555555555555443333 355555 456666533 3333 5679999888743333 3333 3334443
Q ss_pred ceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
...--..|.++. -..|+-+|++||+.|
T Consensus 156 ~~~~nptG~~~~---l~~i~~l~~~~~~~l 182 (398)
T 2rfv_A 156 ETPANPTLSLVD---IETVAGIAHQQGALL 182 (398)
T ss_dssp ESSBTTTTBCCC---HHHHHHHHHHTTCEE
T ss_pred ECCCCCCCcccC---HHHHHHHHHHcCCEE
Confidence 222223355553 456777888888753
No 230
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=29.32 E-value=1.6e+02 Score=29.40 Aligned_cols=101 Identities=18% Similarity=0.166 Sum_probs=52.2
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHH-hCCCceEEEecc----------hHHHHh
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLV-RKGLSCTYTHIN----------AISYII 520 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~-~~GI~vTyI~Ds----------Avs~iM 520 (559)
+....+++|-|.+..+..++..+.+.| -+|++. +|.+.+... .+. ..|+.+..+... ++-..+
T Consensus 106 ~~~~~i~~~~G~~~ai~~~~~~~~~~g--d~Vl~~--~p~y~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l 179 (428)
T 1iay_A 106 FDPERVVMAGGATGANETIIFCLADPG--DAFLVP--SPYYPAFNR--DLRWRTGVQLIPIHCESSNNFKITSKAVKEAY 179 (428)
T ss_dssp CCTTSCEEEEHHHHHHHHHHHHHCCTT--CEEEEE--SSCCTTHHH--HTTTTTCCEEEEECCCTTTTTCCCHHHHHHHH
T ss_pred CChhhEEEccChHHHHHHHHHHhCCCC--CeEEEc--cCCCcchHH--HHHHhcCCEEEEeecCCccCCcCCHHHHHHHH
Confidence 334567788777777766666554333 355554 455655432 122 357777776521 122223
Q ss_pred c-------cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 521 H-------EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 521 ~-------~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
. ++..|++ +..--..|.++.+-=-..|+-+|+.|+++|
T Consensus 180 ~~~~~~~~~~~~v~l-~~p~nptG~~~~~~~l~~l~~~~~~~~~~l 224 (428)
T 1iay_A 180 ENAQKSNIKVKGLIL-TNPSNPLGTTLDKDTLKSVLSFTNQHNIHL 224 (428)
T ss_dssp HHHHHTTCCEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHTTTCEE
T ss_pred HHHHhcCCceEEEEE-cCCCCCCCCcCCHHHHHHHHHHHHHCCeEE
Confidence 2 2344544 222223455554332345666777887753
No 231
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=29.07 E-value=91 Score=26.01 Aligned_cols=59 Identities=10% Similarity=0.143 Sum_probs=39.1
Q ss_pred EEEEecCcHHHHHHHHHHH----HhCCceEEEEcCC-CCCchHHHHHHHHHh----CCCceEEEecch
Q 008627 457 VLLTYGSSSAVEMILQHAH----ELGKQFRVVIVDS-RPKHEGKLLLRRLVR----KGLSCTYTHINA 515 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~----e~Gk~FrViVvES-RP~~EG~~LAk~L~~----~GI~vTyI~DsA 515 (559)
.|.++....-+...|.... .....+.++++|- -|...|.++++.|.+ .++++.+++...
T Consensus 32 ~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~ 99 (152)
T 3heb_A 32 EIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKENPHTRRSPVVILTTTD 99 (152)
T ss_dssp CEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHHSTTTTTSCEEEEESCC
T ss_pred eEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHhcccccCCCEEEEecCC
Confidence 4666655544444443211 1246789999985 488899999999988 357777777543
No 232
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A
Probab=29.05 E-value=2.8e+02 Score=27.57 Aligned_cols=89 Identities=13% Similarity=0.141 Sum_probs=56.1
Q ss_pred cCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcce-
Q 008627 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGAS- 531 (559)
Q Consensus 453 ~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAd- 531 (559)
.+..+|+.+|.-......+....+.....+|+|.+-.+ ....++++++...++++. . + .+..++ ++|.|++..-
T Consensus 123 ~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~-~~a~~la~~~~~~~~~~~-~-~-~~~e~v-~aDvVi~aTp~ 197 (322)
T 1omo_A 123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVRE-KAAKKFVSYCEDRGISAS-V-Q-PAEEAS-RCDVLVTTTPS 197 (322)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSH-HHHHHHHHHHHHTTCCEE-E-C-CHHHHT-SSSEEEECCCC
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCH-HHHHHHHHHHHhcCceEE-E-C-CHHHHh-CCCEEEEeeCC
Confidence 46678999998766665555544433334677775433 334567777776666665 3 3 244455 8999986532
Q ss_pred -------eeecCCceecccchH
Q 008627 532 -------SVLSNGTVCSRVGTA 546 (559)
Q Consensus 532 -------aIlaNGsVvNKvGT~ 546 (559)
..+..|..++-+|++
T Consensus 198 ~~pv~~~~~l~~G~~V~~ig~~ 219 (322)
T 1omo_A 198 RKPVVKAEWVEEGTHINAIGAD 219 (322)
T ss_dssp SSCCBCGGGCCTTCEEEECSCC
T ss_pred CCceecHHHcCCCeEEEECCCC
Confidence 235578888888765
No 233
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=29.03 E-value=1.8e+02 Score=28.79 Aligned_cols=98 Identities=13% Similarity=0.071 Sum_probs=52.5
Q ss_pred cCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCc-eEEEecchHH-HH--h---ccccE
Q 008627 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLS-CTYTHINAIS-YI--I---HEVTR 525 (559)
Q Consensus 453 ~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~-vTyI~DsAvs-~i--M---~~Vdk 525 (559)
....+++|-|.+..+..+ ..+...| -+|++. .|.+.|... .+...|+. +.++....-. +. + .++..
T Consensus 94 ~~~~v~~~~G~~~al~~~-~~~~~~g--d~Vl~~--~p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (400)
T 3asa_A 94 DAKEIFISDGAKVDLFRL-LSFFGPN--QTVAIQ--DPSYPAYLD--IARLTGAKEIIALPCLQENAFFPEFPEDTHIDI 166 (400)
T ss_dssp CGGGEEEESCHHHHHHHH-HHHHCSS--CEEEEE--ESCCHHHHH--HHHHTTCSEEEEEECCGGGTTCCCCCTTCCCSE
T ss_pred CHHHEEEccChHHHHHHH-HHHcCCC--CEEEEC--CCCcHHHHH--HHHHcCCcceEecccchhcCcccChhhccCccE
Confidence 345678887766666554 4444333 356654 377776543 34456888 8877632211 11 1 34556
Q ss_pred EEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 526 VlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
|++- ..-...|.++..-=-..|+-+|+++++.
T Consensus 167 v~l~-~p~nptG~~~~~~~l~~l~~~~~~~~~~ 198 (400)
T 3asa_A 167 LCLC-SPNNPTGTVLNKDQLRAIVHYAIEHEIL 198 (400)
T ss_dssp EEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCE
T ss_pred EEEe-CCCCCCCCcCCHHHHHHHHHHHHHcCCE
Confidence 6663 2223335554432223466678888875
No 234
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=29.02 E-value=1.6e+02 Score=27.94 Aligned_cols=93 Identities=11% Similarity=0.082 Sum_probs=53.4
Q ss_pred CEEEEecCcHHHHH-HHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe--cchHHHHhccccEEEEccee
Q 008627 456 DVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--INAISYIIHEVTRVFLGASS 532 (559)
Q Consensus 456 dvILT~g~SstV~~-iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~--DsAvs~iM~~VdkVlLGAda 532 (559)
.+||..|-++.+-. ++..+.++| .+|+++.-++...- |. ++.+.... ...+..++.++|.||--|-.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~------~~--~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~~ 72 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKNDG--NTPIILTRSIGNKA------IN--DYEYRVSDYTLEDLINQLNDVDAVVHLAAT 72 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCCC-------------CCEEEECCCCHHHHHHHTTTCSEEEECCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC--CEEEEEeCCCCccc------CC--ceEEEEccccHHHHHHhhcCCCEEEEcccc
Confidence 47899998887754 444445544 57777765433211 21 44432222 23455566778877765533
Q ss_pred eecC----CceecccchHHHHHHHhhCCCC
Q 008627 533 VLSN----GTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 533 IlaN----GsVvNKvGT~~IALaAk~~~VP 558 (559)
...+ -.-+|-.||..+.-+|+..+++
T Consensus 73 ~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~ 102 (311)
T 3m2p_A 73 RGSQGKISEFHDNEILTQNLYDACYENNIS 102 (311)
T ss_dssp CCSSSCGGGTHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 2211 1125678999999999888765
No 235
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*
Probab=28.80 E-value=2.4e+02 Score=25.76 Aligned_cols=76 Identities=13% Similarity=0.140 Sum_probs=47.8
Q ss_pred CCCEEEEecCcHHH-HHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhc------
Q 008627 454 DGDVLLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH------ 521 (559)
Q Consensus 454 dGdvILT~g~SstV-~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~------ 521 (559)
.|.+||..|-|+-+ ..+.+...++| .+|++++-++......+.++|...|..+.++. | ..+..++.
T Consensus 6 ~~k~vlVTGasggiG~~~a~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (258)
T 3afn_B 6 KGKRVLITGSSQGIGLATARLFARAG--AKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKF 83 (258)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC--CEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 35678888877666 44444555544 57888865533445567778877777776663 3 33444554
Q ss_pred -cccEEEEcce
Q 008627 522 -EVTRVFLGAS 531 (559)
Q Consensus 522 -~VdkVlLGAd 531 (559)
.+|.||--|-
T Consensus 84 g~id~vi~~Ag 94 (258)
T 3afn_B 84 GGIDVLINNAG 94 (258)
T ss_dssp SSCSEEEECCC
T ss_pred CCCCEEEECCC
Confidence 6888887664
No 236
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=28.78 E-value=2e+02 Score=26.71 Aligned_cols=74 Identities=24% Similarity=0.199 Sum_probs=41.1
Q ss_pred EEEEecCcHHHHHHHHHHH----HhCCceEEEEcCCCCCc---hHHHHHHHHHhCCCceEEEe--cch---HHHHhcccc
Q 008627 457 VLLTYGSSSAVEMILQHAH----ELGKQFRVVIVDSRPKH---EGKLLLRRLVRKGLSCTYTH--INA---ISYIIHEVT 524 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~----e~Gk~FrViVvESRP~~---EG~~LAk~L~~~GI~vTyI~--DsA---vs~iM~~Vd 524 (559)
+++-+..|..-..+|..|. ..+-.++|+-+...+.. .-.++...|.+.|+++++.. ... +-.+..+.|
T Consensus 157 ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~a~~~d 236 (268)
T 3ab8_A 157 ALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPARAEAWALEAEAYLRDHGVEASALVLGGDAADHLLRLQGPGD 236 (268)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHCCTTE
T ss_pred EEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHHHHHHHHHHHHHHHHHcCCceEEEEeCCChHHHHHHHHHhCC
Confidence 3444566655555555433 34566776644332211 12245667788899887653 222 333333459
Q ss_pred EEEEcc
Q 008627 525 RVFLGA 530 (559)
Q Consensus 525 kVlLGA 530 (559)
.+++|+
T Consensus 237 liV~G~ 242 (268)
T 3ab8_A 237 LLALGA 242 (268)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 999999
No 237
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=28.76 E-value=1.2e+02 Score=24.59 Aligned_cols=54 Identities=15% Similarity=0.173 Sum_probs=33.0
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCC-CCchHHHHHHHHHh--CC--CceEEEec
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR-PKHEGKLLLRRLVR--KG--LSCTYTHI 513 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESR-P~~EG~~LAk~L~~--~G--I~vTyI~D 513 (559)
|-.|.+..... .++....+ ..+.++++|-. |...|.++++.|.+ .. +++.+++.
T Consensus 31 g~~v~~~~~~~---~a~~~l~~--~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~ 89 (142)
T 3cg4_A 31 GFHIISADSGG---QCIDLLKK--GFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTA 89 (142)
T ss_dssp TCEEEEESSHH---HHHHHHHT--CCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEEC
T ss_pred CeEEEEeCCHH---HHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEEC
Confidence 44455444433 33433322 45888888854 77899999999988 43 45555543
No 238
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=28.68 E-value=32 Score=29.79 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=16.5
Q ss_pred eEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 008627 481 FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 481 FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~ 512 (559)
|.|+|+-.-| -|..+|..|++.|++|+++-
T Consensus 3 ~dV~IIGaGp--aGL~aA~~La~~G~~V~v~E 32 (336)
T 3kkj_A 3 VPIAIIGTGI--AGLSAAQALTAAGHQVHLFD 32 (336)
T ss_dssp CCEEEECCSH--HHHHHHHHHHHTTCCEEEEC
T ss_pred CCEEEECcCH--HHHHHHHHHHHCCCCEEEEE
Confidence 3455554433 35555666666666666653
No 239
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}
Probab=28.63 E-value=1.9e+02 Score=26.54 Aligned_cols=57 Identities=23% Similarity=0.208 Sum_probs=40.6
Q ss_pred CCCEEEEecCcHHH-HHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 008627 454 DGDVLLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 454 dGdvILT~g~SstV-~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~ 512 (559)
.|.+||..|-|+-+ ..+.+...++| .+|+++..|......+++++|...|-.+.++.
T Consensus 6 ~~k~vlITGas~gIG~~~a~~l~~~G--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (255)
T 3icc_A 6 KGKVALVTGASRGIGRAIAKRLANDG--ALVAIHYGNRKEEAEETVYEIQSNGGSAFSIG 63 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESSCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--CeEEEEeCCchHHHHHHHHHHHhcCCceEEEe
Confidence 45677777777655 44444455544 68888888877778888899988887777663
No 240
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=28.63 E-value=1.9e+02 Score=28.79 Aligned_cols=99 Identities=16% Similarity=0.227 Sum_probs=53.5
Q ss_pred cCC-CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc-----------------
Q 008627 453 RDG-DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------------- 514 (559)
Q Consensus 453 ~dG-dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds----------------- 514 (559)
... .+++|.|.+..+..++..+...| -+|++.+ |.+.|...+ +...|+.+.++...
T Consensus 99 ~~~~~v~~~~g~~~a~~~~~~~~~~~g--d~Vl~~~--p~y~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 172 (429)
T 1yiz_A 99 NPMTEVLVTVGAYEALYATIQGHVDEG--DEVIIIE--PFFDCYEPM--VKAAGGIPRFIPLKPNKTGGTISSADWVLDN 172 (429)
T ss_dssp CTTTSEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCTTHHHH--HHHTTCEEEEEECBCCCSSSSEEGGGCBCCH
T ss_pred CCcCCEEEecChHHHHHHHHHHhcCCC--CEEEEcC--CCchhHHHH--HHHcCCEEEEEeCCcccccccccccCcccCH
Confidence 344 67888777777776666654333 3566654 666665432 34568887777531
Q ss_pred -hHHHHhc-cccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 515 -AISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 515 -Avs~iM~-~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
.+-..+. ++..|++- ..--..|.++.+-=-..|+-+|++||+.
T Consensus 173 ~~l~~~l~~~~~~v~~~-~p~nptG~~~~~~~l~~i~~~~~~~~~~ 217 (429)
T 1yiz_A 173 NELEALFNEKTKMIIIN-TPHNPLGKVMDRAELEVVANLCKKWNVL 217 (429)
T ss_dssp HHHHHHCCTTEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHhccCceEEEEC-CCCCCCCccCCHHHHHHHHHHHHHcCcE
Confidence 1222222 34445542 2222335554432234566677888764
No 241
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=28.59 E-value=3.8e+02 Score=28.96 Aligned_cols=105 Identities=14% Similarity=0.112 Sum_probs=68.8
Q ss_pred HHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCC--------------chH----HHHHHHHHhC-
Q 008627 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK--------------HEG----KLLLRRLVRK- 504 (559)
Q Consensus 444 Ia~~Aa~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~--------------~EG----~~LAk~L~~~- 504 (559)
+...+.++|.+ ..||..|..++=..++......|.. ++.++|.... .-| ..+++.|.+.
T Consensus 22 ~G~~~q~~L~~-~~VlvvG~GGlGseiak~La~aGVg-~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lN 99 (531)
T 1tt5_A 22 WGDHGQEALES-AHVCLINATATGTEILKNLVLPGIG-SFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELN 99 (531)
T ss_dssp HHHHHHHHHHH-CEEEEECCSHHHHHHHHHHHTTTCS-EEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTC
T ss_pred cCHHHHHHHhc-CeEEEECcCHHHHHHHHHHHHcCCC-eEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhC
Confidence 56677777764 6799999998888888888777754 5666664331 113 2346677765
Q ss_pred -CCceEEEecch------HHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 505 -GLSCTYTHINA------ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 505 -GI~vTyI~DsA------vs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+++++.+...- ...++...|.||.+.|.+- --+.+.-+|..++||+
T Consensus 100 p~v~v~~~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~---------~r~~ln~~c~~~~ipl 152 (531)
T 1tt5_A 100 SDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPES---------TSLRLADVLWNSQIPL 152 (531)
T ss_dssp TTSBCCEESSCHHHHHHSCGGGGGGCSEEEEESCCHH---------HHHHHHHHHHHTTCCE
T ss_pred CCCeEEEeCCCcchhhhhhHHHhcCCCEEEEeCCCHH---------HHHHHHHHHHHcCCCE
Confidence 46777665422 1245678999988865432 2345666788889985
No 242
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Probab=28.55 E-value=2e+02 Score=28.72 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=27.5
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCC
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK 491 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~ 491 (559)
.+..|++||.+|.+.+=..++..|+..|-. +|++++..+.
T Consensus 188 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~-~Vi~~~~~~~ 227 (374)
T 2jhf_A 188 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAA-RIIGVDINKD 227 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCS-EEEEECSCGG
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEcCCHH
Confidence 467899999999654445566666665532 7888886654
No 243
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=28.46 E-value=43 Score=32.25 Aligned_cols=42 Identities=10% Similarity=0.102 Sum_probs=24.7
Q ss_pred hHHHHHHHHHhCCCceEEEecchH---HHHhccccEEEEcceeee
Q 008627 493 EGKLLLRRLVRKGLSCTYTHINAI---SYIIHEVTRVFLGASSVL 534 (559)
Q Consensus 493 EG~~LAk~L~~~GI~vTyI~DsAv---s~iM~~VdkVlLGAdaIl 534 (559)
.|..+++.|.+.|++|.++..... -.-+.++|.||.+.|.-+
T Consensus 23 s~~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~~~~ 67 (307)
T 3r5x_A 23 TGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHGKY 67 (307)
T ss_dssp HHHHHHHHSCTTTEEEEEEECSSGGGHHHHTTTCSEEEECCCSHH
T ss_pred HHHHHHHHHHHCCCEEEEEcccCchhHHHhccCCCEEEEeCCCCC
Confidence 355566666666666666654321 122347888888876544
No 244
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=28.41 E-value=3.6e+02 Score=26.48 Aligned_cols=98 Identities=11% Similarity=0.042 Sum_probs=48.2
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCC--ceEEEec-----------------chH
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGL--SCTYTHI-----------------NAI 516 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI--~vTyI~D-----------------sAv 516 (559)
.+++|-|-+..++.++ .+...| -+|++.+ +.+-|..+...+...|+ .+.++.. ..+
T Consensus 53 ~v~~~~sgt~a~~~~~-~~~~~g--d~vi~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l 127 (379)
T 3ke3_A 53 AVIIPGSGTYGMEAVA-RQLTID--EDCLIIR--NGWFSYRWTQILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETA 127 (379)
T ss_dssp EEEEESCHHHHHHHHH-HHHCTT--CEEEEEE--CSHHHHHHHHHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHH
T ss_pred EEEEcCChhHHHHHHH-HhCCCC--CeEEEEe--CCchhHHHHHHHHHhCCCCceEEEeccccccccccCCCCCCCHHHH
Confidence 3444445555555554 333333 3677775 45566655555555565 4555431 234
Q ss_pred HHHhc--cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 517 SYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 517 s~iM~--~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
-..+. +...|++ .+.=...|.+....--..|+-+|++||+.+
T Consensus 128 ~~~i~~~~~~~v~~-~~~~~~~G~~~~~~~l~~i~~~~~~~~~~l 171 (379)
T 3ke3_A 128 VAKIKEDKSAIVYA-PHVETSSGIILSEEYIKALSEAVHSVGGLL 171 (379)
T ss_dssp HHHHHHHTCSEEEE-ESEETTTTEECCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHhhcCCcEEEE-EeecCCCceeCCHHHHHHHHHHHHHcCCEE
Confidence 44442 4555544 111112343333222345677888888753
No 245
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=28.37 E-value=1.4e+02 Score=28.22 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=41.5
Q ss_pred EEEEecCcHHHHHHHHHHHHhCCceEEEEcC-CCCCchHHHHHHHHHhCCCceEEEecc----------hHHHHhc--cc
Q 008627 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVD-SRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH--EV 523 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~Gk~FrViVvE-SRP~~EG~~LAk~L~~~GI~vTyI~Ds----------Avs~iM~--~V 523 (559)
.||..|..+....+|....+....++|.++= .+|...+.+.| .+.||++.++... .+-..++ ++
T Consensus 7 ~vl~sG~g~~~~~~l~~l~~~~l~~~I~~Vit~~~~~~v~~~A---~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (212)
T 3av3_A 7 AVFASGSGTNFQAIVDAAKRGDLPARVALLVCDRPGAKVIERA---ARENVPAFVFSPKDYPSKAAFESEILRELKGRQI 83 (212)
T ss_dssp EEECCSSCHHHHHHHHHHHTTCCCEEEEEEEESSTTCHHHHHH---HHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCcHHHHHHHHHHHhCCCCCeEEEEEeCCCCcHHHHHH---HHcCCCEEEeCcccccchhhhHHHHHHHHHhcCC
Confidence 3566677777666666555432245554332 34555555444 4579999876532 4444454 58
Q ss_pred cEEEEcc
Q 008627 524 TRVFLGA 530 (559)
Q Consensus 524 dkVlLGA 530 (559)
|.+++-+
T Consensus 84 Dliv~a~ 90 (212)
T 3av3_A 84 DWIALAG 90 (212)
T ss_dssp CEEEESS
T ss_pred CEEEEch
Confidence 9888765
No 246
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*
Probab=28.34 E-value=30 Score=33.61 Aligned_cols=100 Identities=10% Similarity=0.095 Sum_probs=54.8
Q ss_pred CEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhccccEEEEc
Q 008627 456 DVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIHEVTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~~VdkVlLG 529 (559)
.+||..|-++.|- .++..+.++|..++|++++-.+...-...+..|...+ +.++. | .++..++..+|.||--
T Consensus 5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~Dl~d~~~~~~~~~~~d~vih~ 82 (348)
T 1oc2_A 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDR--VELVVGDIADAELVDKLAAKADAIVHY 82 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSS--EEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCC--eEEEECCCCCHHHHHHHhhcCCEEEEC
Confidence 4688888887774 4444555554457888886543211111112222223 33332 2 3566677888888776
Q ss_pred ceeeec-----CC---ceecccchHHHHHHHhhCCC
Q 008627 530 ASSVLS-----NG---TVCSRVGTACVAMVAYGFHI 557 (559)
Q Consensus 530 AdaIla-----NG---sVvNKvGT~~IALaAk~~~V 557 (559)
|-.... +- .-+|-.||..+.-+|..+++
T Consensus 83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~ 118 (348)
T 1oc2_A 83 AAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI 118 (348)
T ss_dssp CSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC
T ss_pred CcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 543211 10 12466788888888876554
No 247
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Probab=28.34 E-value=2.7e+02 Score=25.84 Aligned_cols=71 Identities=21% Similarity=0.205 Sum_probs=45.3
Q ss_pred CCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhc-------
Q 008627 455 GDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH------- 521 (559)
Q Consensus 455 GdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~------- 521 (559)
|.+||..|-|+-+- .+.+...++| .+|++++-++. ..++.+|.+.|..+.++. | ..+..++.
T Consensus 4 ~k~vlVTGas~giG~~ia~~l~~~G--~~V~~~~r~~~---~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 78 (255)
T 2q2v_A 4 GKTALVTGSTSGIGLGIAQVLARAG--ANIVLNGFGDP---APALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFG 78 (255)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTT--CEEEEECSSCC---HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCch---HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 56788888776664 4444445545 57888876554 556777877777777653 3 34555555
Q ss_pred cccEEEEcc
Q 008627 522 EVTRVFLGA 530 (559)
Q Consensus 522 ~VdkVlLGA 530 (559)
.+|.||--|
T Consensus 79 ~id~lv~~A 87 (255)
T 2q2v_A 79 GVDILVNNA 87 (255)
T ss_dssp SCSEEEECC
T ss_pred CCCEEEECC
Confidence 578777655
No 248
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=28.27 E-value=2e+02 Score=28.69 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=27.5
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCC
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK 491 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~ 491 (559)
.+..|++||.+|.+.+=..++..|+..|-. +|++++..+.
T Consensus 188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~-~Vi~~~~~~~ 227 (373)
T 1p0f_A 188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGAS-RIIGVGTHKD 227 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCS-EEEEECSCGG
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEECCCHH
Confidence 477899999999654435556666655532 7888886654
No 249
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=28.26 E-value=1.3e+02 Score=28.71 Aligned_cols=69 Identities=17% Similarity=0.260 Sum_probs=40.7
Q ss_pred EEEecCcHHHHHHHHHHHHhCC-ceEEEEcC-CCCCchHHHHHHHHHhCCCceEEEec----------chHHHHhc--cc
Q 008627 458 LLTYGSSSAVEMILQHAHELGK-QFRVVIVD-SRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH--EV 523 (559)
Q Consensus 458 ILT~g~SstV~~iL~~A~e~Gk-~FrViVvE-SRP~~EG~~LAk~L~~~GI~vTyI~D----------sAvs~iM~--~V 523 (559)
||.-|+.+..+.++ .+.+++. .++|.+|= .+|...|++.| .+.||++.++.. ..+...++ ++
T Consensus 5 Vl~SG~Gs~L~aLi-~~~~~~~~~~~I~~Vvs~~~~~~~~~~A---~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~ 80 (209)
T 1meo_A 5 VLISGTGSNLQALI-DSTREPNSSAQIDIVISNKAAVAGLDKA---ERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSI 80 (209)
T ss_dssp EEESSSCTTHHHHH-HHHHSTTCSCEEEEEEESSTTCHHHHHH---HHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTC
T ss_pred EEEECCchHHHHHH-HHHhcCCCCcEEEEEEeCCCChHHHHHH---HHcCCCEEEECccccCchhhhhHHHHHHHHhcCC
Confidence 55555555655555 4555443 46655443 34566776555 457999987653 34445555 58
Q ss_pred cEEEEcc
Q 008627 524 TRVFLGA 530 (559)
Q Consensus 524 dkVlLGA 530 (559)
|.+++-+
T Consensus 81 Dliv~a~ 87 (209)
T 1meo_A 81 DIVCLAG 87 (209)
T ss_dssp CEEEEES
T ss_pred CEEEEcc
Confidence 9887655
No 250
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=28.22 E-value=1.2e+02 Score=31.03 Aligned_cols=96 Identities=18% Similarity=0.130 Sum_probs=50.9
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHH-HHH-HHHhCCCceEEEecc---hHHHHhc-cccEEEEc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LLR-RLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~-LAk-~L~~~GI~vTyI~Ds---Avs~iM~-~VdkVlLG 529 (559)
++|+|-+-+..+..+|..+.+.| -+|++. .|.+.|.. +++ .+...|+.+.++... ++-..+. ++..|++
T Consensus 98 ~~~~~~sG~~Ai~~al~~l~~~G--d~Vi~~--~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ai~~~t~~v~l- 172 (414)
T 3ndn_A 98 AAFATASGMAAVFTSLGALLGAG--DRLVAA--RSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSVPTQAVFF- 172 (414)
T ss_dssp EEEEESSHHHHHHHHHHTTCCTT--CEEEEE--SCCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHTSSCCSEEEE-
T ss_pred cEEEECCHHHHHHHHHHHHhCCC--CEEEEc--CCccchHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCCCCeEEEE-
Confidence 44555444444444444443333 355554 35565543 333 345689999998743 3333443 4556665
Q ss_pred ceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
..---..|.+.. -..|+-+|+++|++|
T Consensus 173 e~p~NptG~~~~---l~~i~~la~~~g~~l 199 (414)
T 3ndn_A 173 ETPSNPMQSLVD---IAAVTELAHAAGAKV 199 (414)
T ss_dssp ESSCTTTCCCCC---HHHHHHHHHHTTCEE
T ss_pred ECCCCCCCcccc---HHHHHHHHHHcCCEE
Confidence 222223344432 346777889998864
No 251
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=28.21 E-value=2.1e+02 Score=26.23 Aligned_cols=69 Identities=13% Similarity=0.155 Sum_probs=47.0
Q ss_pred ceEEEEcCCCCCchHHHHHHHHHh-CCCceEEEec------chHHHHhc--cccEEEEcceeeecCCceecccchHHHHH
Q 008627 480 QFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTHI------NAISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAM 550 (559)
Q Consensus 480 ~FrViVvESRP~~EG~~LAk~L~~-~GI~vTyI~D------sAvs~iM~--~VdkVlLGAdaIlaNGsVvNKvGT~~IAL 550 (559)
.|+++.+++ .++.|.+ .||+|+.+.- ..+...|+ ++|.||-=-|-+ |.--...-.+.|--
T Consensus 39 Gf~l~AT~g--------Ta~~L~e~~Gl~v~~v~k~~eGG~p~I~d~I~~geIdlVInt~~pl---~~~~h~~D~~~IrR 107 (152)
T 1b93_A 39 QHVLYATGT--------TGNLISRATGMNVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDPL---NAVPHDPDVKALLR 107 (152)
T ss_dssp TSEEEEETT--------HHHHHHHHHCCCCEEECCGGGTHHHHHHHHHHTTCCCEEEEECCTT---SCCTTHHHHHHHHH
T ss_pred CCEEEEccH--------HHHHHHHHhCceeEEEEecCCCCCchHHHHHHCCCccEEEEcCCcc---cCCcccccHHHHHH
Confidence 689999876 5778887 8999999952 12556665 699998532200 32222344567778
Q ss_pred HHhhCCCCC
Q 008627 551 VAYGFHIPV 559 (559)
Q Consensus 551 aAk~~~VPV 559 (559)
+|-.||||+
T Consensus 108 ~A~~~~IP~ 116 (152)
T 1b93_A 108 LATVWNIPV 116 (152)
T ss_dssp HHHHTTCCE
T ss_pred HHHHcCCCE
Confidence 899999985
No 252
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=28.19 E-value=1.3e+02 Score=24.70 Aligned_cols=34 Identities=12% Similarity=0.106 Sum_probs=21.1
Q ss_pred HHHHhCCCceEEEe--cc---hHHHHhccccEEEEccee
Q 008627 499 RRLVRKGLSCTYTH--IN---AISYIIHEVTRVFLGASS 532 (559)
Q Consensus 499 k~L~~~GI~vTyI~--Ds---Avs~iM~~VdkVlLGAda 532 (559)
+.|.+.|++++... .. .+..+..++|.|++|++.
T Consensus 73 ~~~~~~g~~~~~~v~~g~~~~~I~~~a~~~dliV~G~~~ 111 (138)
T 3idf_A 73 TFFTEKGINPFVVIKEGEPVEMVLEEAKDYNLLIIGSSE 111 (138)
T ss_dssp HHHHTTTCCCEEEEEESCHHHHHHHHHTTCSEEEEECCT
T ss_pred HHHHHCCCCeEEEEecCChHHHHHHHHhcCCEEEEeCCC
Confidence 34455788876543 22 233333489999999974
No 253
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Probab=28.13 E-value=1.7e+02 Score=29.23 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=27.5
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCC
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK 491 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~ 491 (559)
.+..|++||.+|.+.+=..++..|+..|- -+||+++..+.
T Consensus 192 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~ 231 (376)
T 1e3i_A 192 KVTPGSTCAVFGLGCVGLSAIIGCKIAGA-SRIIAIDINGE 231 (376)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGG
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHH
Confidence 47789999999964443556666665552 17888887654
No 254
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=28.07 E-value=3e+02 Score=26.36 Aligned_cols=98 Identities=11% Similarity=0.129 Sum_probs=57.5
Q ss_pred CCCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhc------
Q 008627 454 DGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH------ 521 (559)
Q Consensus 454 dGdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~------ 521 (559)
.|.+||+.|-++-+- .+.+...++| .+|++++-+.......+...+.+.|..+.++. | ..+..++.
T Consensus 46 ~gk~vlVTGas~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 123 (291)
T 3ijr_A 46 KGKNVLITGGDSGIGRAVSIAFAKEG--ANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQL 123 (291)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 356788887776664 4444445545 57888876654444455666777788887763 3 23333343
Q ss_pred -cccEEEEcceeeecCCce-------------ecccchHHHHHHHh
Q 008627 522 -EVTRVFLGASSVLSNGTV-------------CSRVGTACVAMVAY 553 (559)
Q Consensus 522 -~VdkVlLGAdaIlaNGsV-------------vNKvGT~~IALaAk 553 (559)
++|.+|--|-.....+.+ +|-.|++.+.-++.
T Consensus 124 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~ 169 (291)
T 3ijr_A 124 GSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAAL 169 (291)
T ss_dssp SSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHH
Confidence 578888766433333321 35566666665554
No 255
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=27.88 E-value=62 Score=26.50 Aligned_cols=56 Identities=25% Similarity=0.340 Sum_probs=35.6
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCC-CCchHHHHHHHHHh----CCCceEEEecch
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR-PKHEGKLLLRRLVR----KGLSCTYTHINA 515 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESR-P~~EG~~LAk~L~~----~GI~vTyI~DsA 515 (559)
|-.|.++.... .++....+ ..+.++++|-. |...|.++++.|.+ ..+++.+++...
T Consensus 30 g~~v~~~~~~~---~a~~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 90 (140)
T 3grc_A 30 GFDSDMVHSAA---QALEQVAR--RPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANA 90 (140)
T ss_dssp TCEEEEECSHH---HHHHHHHH--SCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTH
T ss_pred CCeEEEECCHH---HHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCC
Confidence 34454544433 33433332 45888888855 78899999999987 256677666543
No 256
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=27.87 E-value=1.4e+02 Score=30.27 Aligned_cols=97 Identities=16% Similarity=0.220 Sum_probs=52.0
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc--------------------
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------------------- 514 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds-------------------- 514 (559)
..+++|-|.+..+..++..+.+.| -+|++.+ |.+.+... .+...|..+.++...
T Consensus 119 ~~v~~t~G~~~al~~~~~~l~~~g--d~Vlv~~--p~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~ 192 (447)
T 3b46_A 119 ENVTVTTGANEGILSCLMGLLNAG--DEVIVFE--PFFDQYIP--NIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFE 192 (447)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCTTHHH--HHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHH
T ss_pred hhEEEeCCHHHHHHHHHHHHcCCC--CEEEEeC--CCchhHHH--HHHHcCCEEEEEeCCCccccccccccccCcccCHH
Confidence 367888777777777776654434 3566655 66666433 234467777666521
Q ss_pred hHHHHhc-cccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 515 AISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 515 Avs~iM~-~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
.+-..+. ++..|+|- .---..|.++.+-=-..|+-+|++|++.
T Consensus 193 ~l~~~l~~~~~~v~l~-~p~nptG~~~~~~~l~~i~~l~~~~~~~ 236 (447)
T 3b46_A 193 QFEKAITSKTKAVIIN-TPHNPIGKVFTREELTTLGNICVKHNVV 236 (447)
T ss_dssp HHHTTCCTTEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCE
T ss_pred HHHHhhccCCeEEEEe-CCCCCCCcccCHHHHHHHHHHHHHcCcE
Confidence 1222222 33344432 2222235555433334566778888875
No 257
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=27.87 E-value=4.8e+02 Score=26.22 Aligned_cols=75 Identities=20% Similarity=0.264 Sum_probs=46.1
Q ss_pred cccCCCEEEEecCcH-HHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHH-hCCC-ceEEEecchHHHHhccccEEE
Q 008627 451 KIRDGDVLLTYGSSS-AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLV-RKGL-SCTYTHINAISYIIHEVTRVF 527 (559)
Q Consensus 451 ~I~dGdvILT~g~Ss-tV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~-~~GI-~vTyI~DsAvs~iM~~VdkVl 527 (559)
.|..|++||-.|+.. -...++ .|+. ...+|+.+|-.|.. .+.|+++. +.|+ +++++.-.+..+--...|.|+
T Consensus 119 ~l~~g~rVLDIGcG~G~~ta~~-lA~~--~ga~V~gIDis~~~--l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~ 193 (298)
T 3fpf_A 119 RFRRGERAVFIGGGPLPLTGIL-LSHV--YGMRVNVVEIEPDI--AELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLM 193 (298)
T ss_dssp TCCTTCEEEEECCCSSCHHHHH-HHHT--TCCEEEEEESSHHH--HHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEE
T ss_pred CCCCcCEEEEECCCccHHHHHH-HHHc--cCCEEEEEECCHHH--HHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEE
Confidence 578899999999863 222222 2332 23589999987643 34555543 3465 688887655553223588888
Q ss_pred Ecc
Q 008627 528 LGA 530 (559)
Q Consensus 528 LGA 530 (559)
+.+
T Consensus 194 ~~a 196 (298)
T 3fpf_A 194 VAA 196 (298)
T ss_dssp ECT
T ss_pred ECC
Confidence 754
No 258
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=27.85 E-value=35 Score=29.66 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=32.5
Q ss_pred HHHHHHHHhCCceEEEEcC-CCCCchHHHHHHHHHhCCCceEEEe
Q 008627 469 MILQHAHELGKQFRVVIVD-SRPKHEGKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 469 ~iL~~A~e~Gk~FrViVvE-SRP~~EG~~LAk~L~~~GI~vTyI~ 512 (559)
..|..+.+ ..|.++++| .=|...|.++++.|.+.++++.+++
T Consensus 44 eAl~~~~~--~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~lT 86 (123)
T 2lpm_A 44 EALDIARK--GQFDIAIIDVNLDGEPSYPVADILAERNVPFIFAT 86 (123)
T ss_dssp HHHHHHHH--CCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCBC
T ss_pred HHHHHHHh--CCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEEe
Confidence 34444433 468889888 6699999999999999999976665
No 259
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=27.84 E-value=1.2e+02 Score=30.38 Aligned_cols=58 Identities=17% Similarity=0.277 Sum_probs=37.0
Q ss_pred hcccCCCEEEEec----CcHHHHHHHHHHH---HhCCceEEEEcCCCCCchHHHH----HHHHHhCCCc
Q 008627 450 TKIRDGDVLLTYG----SSSAVEMILQHAH---ELGKQFRVVIVDSRPKHEGKLL----LRRLVRKGLS 507 (559)
Q Consensus 450 ~~I~dGdvILT~g----~SstV~~iL~~A~---e~Gk~FrViVvESRP~~EG~~L----Ak~L~~~GI~ 507 (559)
+++.+|+-|+.++ -|+|.+.+...+. ++-..++|+|+||+-..-|..+ |.+|.+.|.+
T Consensus 79 ~l~~~g~~ii~i~iSs~LSGTy~sA~~aa~~~~e~~~~~~I~ViDS~~~s~g~g~~v~~A~~l~~~G~s 147 (297)
T 3nyi_A 79 SFVEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRMLEDGLS 147 (297)
T ss_dssp HHHTTTCCEEEEESCTTTCSHHHHHHHHHHHHHHHCTTCCEEEEECSCCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHCCCeEEEEECCCcHhHHHHHHHHHHHHHHhhCCCCeEEEEeCCchHHHHHHHHHHHHHHHHcCCC
Confidence 3455566555544 3577776666552 3334578999999987766543 6677777764
No 260
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=27.82 E-value=89 Score=28.97 Aligned_cols=84 Identities=11% Similarity=0.059 Sum_probs=49.5
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecch----HHHH-hccccEEEEc
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA----ISYI-IHEVTRVFLG 529 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsA----vs~i-M~~VdkVlLG 529 (559)
...|+.+|+..+-..+...+.+. .+ |+++|..|.. ++.|. .|+.+.+. |.. +... +.++|.||+.
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~--g~-v~vid~~~~~-----~~~~~-~~~~~i~g-d~~~~~~l~~a~i~~ad~vi~~ 78 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGS--EV-FVLAEDENVR-----KKVLR-SGANFVHG-DPTRVSDLEKANVRGARAVIVD 78 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTS--EE-EEEESCGGGH-----HHHHH-TTCEEEES-CTTCHHHHHHTTCTTCSEEEEC
T ss_pred CCEEEEECCChHHHHHHHHHHhC--Ce-EEEEECCHHH-----HHHHh-cCCeEEEc-CCCCHHHHHhcCcchhcEEEEc
Confidence 45788899977766666666543 35 8888876542 34444 67655432 322 2222 5678888765
Q ss_pred ceeeecCCceecccchHHHHHHHhhCCC
Q 008627 530 ASSVLSNGTVCSRVGTACVAMVAYGFHI 557 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~~IALaAk~~~V 557 (559)
.+ +..-...+++.|+.++.
T Consensus 79 ~~---------~d~~n~~~~~~a~~~~~ 97 (234)
T 2aef_A 79 LE---------SDSETIHCILGIRKIDE 97 (234)
T ss_dssp CS---------CHHHHHHHHHHHHHHCS
T ss_pred CC---------CcHHHHHHHHHHHHHCC
Confidence 42 12334567777877664
No 261
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D
Probab=27.62 E-value=1.2e+02 Score=28.39 Aligned_cols=94 Identities=10% Similarity=0.096 Sum_probs=54.9
Q ss_pred EEEEecCcHHHHHHHH-HHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe--c-chHHHHhccccEEEEccee
Q 008627 457 VLLTYGSSSAVEMILQ-HAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVFLGASS 532 (559)
Q Consensus 457 vILT~g~SstV~~iL~-~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~--D-sAvs~iM~~VdkVlLGAda 532 (559)
+||..|-++.+-..|. .+.++...++|+++.-++.. +..|...++.+.... | ..+..++.++|.||--|-.
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~-----~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 76 (287)
T 2jl1_A 2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEK-----ASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGP 76 (287)
T ss_dssp CEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTT-----THHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred eEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHH-----HhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCC
Confidence 4788888877754444 44443114677777644422 123444565543322 1 4566777888888865432
Q ss_pred eecCCceecccchHHHHHHHhhCCC
Q 008627 533 VLSNGTVCSRVGTACVAMVAYGFHI 557 (559)
Q Consensus 533 IlaNGsVvNKvGT~~IALaAk~~~V 557 (559)
- -+.-+|-.||..+.-+|+..++
T Consensus 77 ~--~~~~~n~~~~~~l~~a~~~~~~ 99 (287)
T 2jl1_A 77 H--YDNTLLIVQHANVVKAARDAGV 99 (287)
T ss_dssp C--SCHHHHHHHHHHHHHHHHHTTC
T ss_pred C--cCchHHHHHHHHHHHHHHHcCC
Confidence 1 1112367799999888888776
No 262
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=27.53 E-value=2.3e+02 Score=27.63 Aligned_cols=94 Identities=9% Similarity=-0.019 Sum_probs=49.3
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---chHHHHhc-------cccE
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIH-------EVTR 525 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D---sAvs~iM~-------~Vdk 525 (559)
+.|++-+-|..+..++..+...| -.|++. .|.+.+. ...+...|+++..+.. ..+-..+. ++..
T Consensus 107 ~~i~~~sGs~a~~~~~~~~~~~g--d~v~~~--~~~~~~~--~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 180 (401)
T 1fc4_A 107 DAILYSSCFDANGGLFETLLGAE--DAIISD--ALNHASI--IDGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVL 180 (401)
T ss_dssp EEEEESCHHHHHHTTHHHHCCTT--CEEEEE--TTCCHHH--HHHHHTSCSEEEEECTTCHHHHHHHHHHHHHTTCSSEE
T ss_pred cEEEeCChHHHHHHHHHHHcCCC--CEEEEc--chhHHHH--HHHHHHcCCceEEECCCCHHHHHHHHHHhhccCCCceE
Confidence 45555443444444444433223 345443 2444332 3345567888888752 33444444 3445
Q ss_pred EEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 526 VlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
|++ ...--..|.++. -..|+-+|++|+++|
T Consensus 181 v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~l 210 (401)
T 1fc4_A 181 IAT-DGVFSMDGVIAN---LKGVCDLADKYDALV 210 (401)
T ss_dssp EEE-ESEETTTTEECC---HHHHHHHHHHTTEEE
T ss_pred EEE-eCCcCCCCCCCC---HHHHHHHHHHcCCEE
Confidence 554 333345566655 466777888888653
No 263
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=27.44 E-value=4.2e+02 Score=26.74 Aligned_cols=91 Identities=13% Similarity=-0.104 Sum_probs=51.7
Q ss_pred EEEEecCcHHHHHHHHHHHH--------hC---CceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc---------hH
Q 008627 457 VLLTYGSSSAVEMILQHAHE--------LG---KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AI 516 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e--------~G---k~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds---------Av 516 (559)
.++|-|-+..+..+|..+.. .| .+.+|++.+ .+ ..+.+.+...|+.+.++... ++
T Consensus 106 ~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~---~h--~~~~~~~~~~G~~v~~v~~~~~~~~~d~~~l 180 (452)
T 2dgk_A 106 GTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP---VQ--ICWHKFARYWDVELREIPMRPGQLFMDPKRM 180 (452)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS---CC--HHHHHHHHHTTCEEEECCCBTTBCSCCHHHH
T ss_pred eEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC---Cc--HHHHHHHHHcCceEEEEecCCCCCeECHHHH
Confidence 67777777666655554432 34 234777765 22 22334444569988888632 23
Q ss_pred HHHhccccEEEEcceeeecCCceecccchHHHHHHHhhC
Q 008627 517 SYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF 555 (559)
Q Consensus 517 s~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~ 555 (559)
-..+.+-+++|+....-...|.+.. -..|+-+|++|
T Consensus 181 ~~~i~~~t~~v~~~~~~n~tG~~~~---l~~I~~ia~~~ 216 (452)
T 2dgk_A 181 IEACDENTIGVVPTFGVTYTGNYEF---PQPLHDALDKF 216 (452)
T ss_dssp HHHCCTTEEEEECBBSCTTTCBBCC---HHHHHHHHHHH
T ss_pred HHHHhhCCEEEEEEcCCcCCcccCC---HHHHHHHHHHH
Confidence 3334344566766666566666533 24566667764
No 264
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=27.37 E-value=1.7e+02 Score=29.05 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=27.5
Q ss_pred cc-CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCC
Q 008627 452 IR-DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK 491 (559)
Q Consensus 452 I~-dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~ 491 (559)
+. .|++||.+|.+.+=..++..|+..|- +||+++..+.
T Consensus 177 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga--~Vi~~~~~~~ 215 (357)
T 2cf5_A 177 LKQPGLRGGILGLGGVGHMGVKIAKAMGH--HVTVISSSNK 215 (357)
T ss_dssp TTSTTCEEEEECCSHHHHHHHHHHHHHTC--EEEEEESSTT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC--eEEEEeCChH
Confidence 55 89999999965444556666666664 7999887654
No 265
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=27.33 E-value=3.2e+02 Score=24.05 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH-HHHHhcCc--------hhhhHHHHHHHHHHHHHhccCCCCHHHH
Q 008627 351 CIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYV-SFLIDCRP--------LSVSMGNAIRFLKSQIAKIPISLSESEA 421 (559)
Q Consensus 351 aiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i-~~L~~aRP--------tsvsmgNAIrrlk~~I~~l~~~~s~~ea 421 (559)
++++++-|+..|.--...++ -++..+.++..| +|+..-|+ +-..|.+||+-|-..........=.++.
T Consensus 16 T~~Vv~~lr~~l~l~~d~~~---~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sfttm~tAlNaLAGHY~s~g~~PlPek~ 92 (113)
T 2y6x_A 16 TLALISSLREAIALPENDPN---KKAAQAEARKKLNDFFALYRRDDSLRSLSSFMTMQTALNSLAGHYSSYPNRPLPEKL 92 (113)
T ss_dssp HHHHHHHHHHHHHSCTTCTT---HHHHHHHHHHHHHHHHHHHTTCHHHHTSHHHHHHHHHHHHHHHHHHHCTTSCCCHHH
T ss_pred HHHHHHHHHHHHcCCCCCcc---HHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHHhhcCCCCCCHHH
Confidence 45677777887764222111 334444443333 34444454 3457999999998888765422225677
Q ss_pred HHHHHHHHHH
Q 008627 422 KATLHSDIER 431 (559)
Q Consensus 422 K~~L~e~Id~ 431 (559)
|+.|.++++.
T Consensus 93 k~Rl~~el~~ 102 (113)
T 2y6x_A 93 KARLEQEFKQ 102 (113)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776643
No 266
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=27.26 E-value=4.1e+02 Score=25.20 Aligned_cols=95 Identities=17% Similarity=0.211 Sum_probs=50.9
Q ss_pred CEEEEecCcHHHHHHHHHHH----HhCCceEEEEcCCCCCchHHHH-HHHHHhCCCceEEEecc--------hHHHHhcc
Q 008627 456 DVLLTYGSSSAVEMILQHAH----ELGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHIN--------AISYIIHE 522 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~----e~Gk~FrViVvESRP~~EG~~L-Ak~L~~~GI~vTyI~Ds--------Avs~iM~~ 522 (559)
.+++|-|.+..+..++.... +.|. +|++.+ |.+.+... +..+...|+.+.++... ++-..+.+
T Consensus 62 ~i~~~~g~~~a~~~~~~~~~~~~~~~gd--~vi~~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~ 137 (382)
T 4hvk_A 62 TVVFTSGATEANNLAIIGYAMRNARKGK--HILVSA--VEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD 137 (382)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHGGGCC--EEEEET--TCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCT
T ss_pred eEEEECCchHHHHHHHHHhhhhhcCCCC--EEEECC--CCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhcc
Confidence 46666666666555555443 4343 566643 34444433 44556689999988633 23333333
Q ss_pred ccEEEEcceeeecCCceecccchHHHHHHHhhCCC
Q 008627 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHI 557 (559)
Q Consensus 523 VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~V 557 (559)
-+++++=...--..|.+.. -..|+-+|++||+
T Consensus 138 ~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~ 169 (382)
T 4hvk_A 138 DTILVSVQHANNEIGTIQP---VEEISEVLAGKAA 169 (382)
T ss_dssp TEEEEECCSBCTTTCBBCC---HHHHHHHHSSSSE
T ss_pred CceEEEEECCCCCceeeCC---HHHHHHHHHHcCE
Confidence 2344443333334455544 3457777888876
No 267
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=27.25 E-value=2e+02 Score=28.95 Aligned_cols=101 Identities=13% Similarity=0.140 Sum_probs=49.8
Q ss_pred CCEEEEecCcHHHHHHHHHHHH-------hCCceEEEEcCCCCCchHHHH-HHHHH-----hCCC-----ceEEEec---
Q 008627 455 GDVLLTYGSSSAVEMILQHAHE-------LGKQFRVVIVDSRPKHEGKLL-LRRLV-----RKGL-----SCTYTHI--- 513 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e-------~Gk~FrViVvESRP~~EG~~L-Ak~L~-----~~GI-----~vTyI~D--- 513 (559)
..+++|-|-+..++.+|+.+.. .|+ -+|++.+ |.+.|... +..+. ..|. .+..+..
T Consensus 115 ~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~-~~vi~~~--~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~ 191 (420)
T 2pb2_A 115 ERVLFMNSGTEANETAFKLARHYACVRHSPFK-TKIIAFH--NAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDL 191 (420)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHTCTTC-CEEEEET--TCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTTCH
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhhccCCCC-CEEEEEe--CCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCCCH
Confidence 4567777777777777766543 232 3677765 44433322 22221 1121 2555542
Q ss_pred chHHHHhccccEEEEcceeeecCCce--ecccchHHHHHHHhhCCCCC
Q 008627 514 NAISYIIHEVTRVFLGASSVLSNGTV--CSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 514 sAvs~iM~~VdkVlLGAdaIlaNGsV--vNKvGT~~IALaAk~~~VPV 559 (559)
.++-..+.+-.++|+ .+.+...|++ +..-=-..|+-+|++||+.+
T Consensus 192 ~~le~~i~~~~~~vi-~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~l 238 (420)
T 2pb2_A 192 HAVKAVMDDHTCAVV-VEPIQGEGGVQAATPEFLKGLRDLCDEHQALL 238 (420)
T ss_dssp HHHHHHCCTTEEEEE-ECSEETTTTSEECCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHhccCceEEE-EeCCcCCCCeecCCHHHHHHHHHHHHHcCCEE
Confidence 334444443223333 2445545554 22322345667888888753
No 268
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=27.23 E-value=2.8e+02 Score=27.80 Aligned_cols=96 Identities=9% Similarity=0.060 Sum_probs=51.6
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHH-HH-HHHhCCCceEEEec---chHHHHhcc-ccEEEEc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LR-RLVRKGLSCTYTHI---NAISYIIHE-VTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~L-Ak-~L~~~GI~vTyI~D---sAvs~iM~~-VdkVlLG 529 (559)
+.|++-+.+..+..++....+.| -+|++. .|.+.+... .. .+...|+.+.++.. ..+-..+.+ +..|++
T Consensus 79 ~~i~~~~g~~ai~~~~~~l~~~g--d~Vl~~--~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~t~~v~l- 153 (404)
T 1e5e_A 79 ACVATSSGMGAIAATVLTILKAG--DHLISD--ECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYF- 153 (404)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEE--SCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTTEEEEEE-
T ss_pred cEEEeCChHHHHHHHHHHHhCCC--CEEEEe--CCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCcEEEE-
Confidence 45655555544444444333333 356654 566665432 22 35668999998864 344444443 334443
Q ss_pred ceeeecCCceecccchHHHHHHHhh-CCCCC
Q 008627 530 ASSVLSNGTVCSRVGTACVAMVAYG-FHIPV 559 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~~IALaAk~-~~VPV 559 (559)
..---..|.++. -..|+-+|++ +|++|
T Consensus 154 ~~p~NptG~v~~---l~~i~~la~~~~~~~l 181 (404)
T 1e5e_A 154 ETPANPTLKIID---MERVCKDAHSQEGVLV 181 (404)
T ss_dssp ESSCTTTCCCCC---HHHHHHHHHTSTTCEE
T ss_pred ECCCCCCCcccC---HHHHHHHHHhhcCCEE
Confidence 222234455553 3567778888 88753
No 269
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=27.20 E-value=1.2e+02 Score=29.04 Aligned_cols=74 Identities=14% Similarity=0.247 Sum_probs=41.4
Q ss_pred EEEEecCcHHHHHHHHHHHHhCC-ceEEEEc-CCCCCchHHHHHHHHHhCCCceEEEec----------chHHHHhc--c
Q 008627 457 VLLTYGSSSAVEMILQHAHELGK-QFRVVIV-DSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH--E 522 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~Gk-~FrViVv-ESRP~~EG~~LAk~L~~~GI~vTyI~D----------sAvs~iM~--~ 522 (559)
.||.-|+.+..+.+|. +.+.|. ..+|.++ =.+|...+.+.|+ +.||+|.++.. ..+-..++ +
T Consensus 6 avl~Sg~Gsnl~ali~-~~~~~~l~~eI~~Visn~~~a~v~~~A~---~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~ 81 (211)
T 3p9x_A 6 AIFASGSGTNAEAIIQ-SQKAGQLPCEVALLITDKPGAKVVERVK---VHEIPVCALDPKTYPSKEAYEIEVVQQLKEKQ 81 (211)
T ss_dssp EEECCTTCHHHHHHHH-HHHTTCCSSEEEEEEESCSSSHHHHHHH---TTTCCEEECCGGGSSSHHHHHHHHHHHHHHTT
T ss_pred EEEEeCCchHHHHHHH-HHHcCCCCcEEEEEEECCCCcHHHHHHH---HcCCCEEEeChhhcCchhhhHHHHHHHHHhcC
Confidence 3555566566555555 455453 2444333 2456655555444 47999987753 24445555 5
Q ss_pred ccEEEEcce-eee
Q 008627 523 VTRVFLGAS-SVL 534 (559)
Q Consensus 523 VdkVlLGAd-aIl 534 (559)
+|.+++-+- .|+
T Consensus 82 ~Dliv~agy~~Il 94 (211)
T 3p9x_A 82 IDFVVLAGYMRLV 94 (211)
T ss_dssp CCEEEESSCCSCC
T ss_pred CCEEEEeCchhhc
Confidence 898887553 344
No 270
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=26.99 E-value=2.1e+02 Score=28.40 Aligned_cols=54 Identities=19% Similarity=0.219 Sum_probs=33.5
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY 510 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTy 510 (559)
.+..|++||.+|.+++=..++..|+..|-. +|++++..+. -.++++ +.|.+.++
T Consensus 168 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~-~Vi~~~~~~~--~~~~a~---~lGa~~vi 221 (356)
T 1pl8_A 168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAA-QVVVTDLSAT--RLSKAK---EIGADLVL 221 (356)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCS-EEEEEESCHH--HHHHHH---HTTCSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCC-EEEEECCCHH--HHHHHH---HhCCCEEE
Confidence 478899999999754445556666655521 7888886542 223343 45666444
No 271
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=26.94 E-value=1.9e+02 Score=28.16 Aligned_cols=98 Identities=18% Similarity=0.274 Sum_probs=50.3
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc--------hHHHH---hc-c
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYI---IH-E 522 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds--------Avs~i---M~-~ 522 (559)
.++++|.|.+..+..++..+.+.| -+|++.+ |.+.+... .+...|+.+..+... .+..+ +. +
T Consensus 79 ~~v~~~~g~~~a~~~~~~~~~~~g--d~Vl~~~--~~~~~~~~--~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~ 152 (381)
T 1v2d_A 79 ESVVVTSGATEALYVLLQSLVGPG--DEVVVLE--PFFDVYLP--DAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPR 152 (381)
T ss_dssp GGEEEESSHHHHHHHHHHHHCCTT--CEEEEEE--SCCTTHHH--HHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTT
T ss_pred hhEEEcCChHHHHHHHHHHhCCCC--CEEEEcC--CCchhHHH--HHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCcC
Confidence 357777777777776666654333 3565554 44544432 344568887777532 12222 22 2
Q ss_pred ccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 523 VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+..|++- ..--..|.++..-=-..|+-+|++||+.+
T Consensus 153 ~~~v~~~-~~~nptG~~~~~~~l~~i~~~~~~~~~~l 188 (381)
T 1v2d_A 153 TRALLLN-TPMNPTGLVFGERELEAIARLARAHDLFL 188 (381)
T ss_dssp EEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred CEEEEEC-CCCCCCCCccCHHHHHHHHHHHHHcCCEE
Confidence 3344432 22222344443322245666788888753
No 272
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=26.84 E-value=55 Score=31.33 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=37.7
Q ss_pred CceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecch---HHHHhccccEEEEcc
Q 008627 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA---ISYIIHEVTRVFLGA 530 (559)
Q Consensus 479 k~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsA---vs~iM~~VdkVlLGA 530 (559)
...+|.|+.-.|...-..+.+.|...|++++++.... +...+.++|.+||.-
T Consensus 11 ~~~~~~~i~~~~~~~~~~i~~~l~~~G~~v~v~~~~~~~~~~~~l~~~Dglil~G 65 (239)
T 1o1y_A 11 HHVRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLERPLEEYSLVVLLG 65 (239)
T ss_dssp CCCEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCCSSCGGGCSEEEECC
T ss_pred ceeEEEEEECCCCCCchHHHHHHHhCCCcEEEeCCcCccccccchhcCCEEEECC
Confidence 5678999988877665578888999999999776433 233456788887754
No 273
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=26.70 E-value=1.6e+02 Score=24.65 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=35.9
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCC-CCchHHHHHHHHHhC----CCceEEEec
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR-PKHEGKLLLRRLVRK----GLSCTYTHI 513 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESR-P~~EG~~LAk~L~~~----GI~vTyI~D 513 (559)
|-.|.+..... .++.... ...+.++++|-. |...|.++++.|.+. .+++.+++.
T Consensus 31 g~~v~~~~~~~---~al~~l~--~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~ 89 (154)
T 3gt7_A 31 GYQTEHVRNGR---EAVRFLS--LTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTI 89 (154)
T ss_dssp TCEEEEESSHH---HHHHHHT--TCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEEC
T ss_pred CCEEEEeCCHH---HHHHHHH--hCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEEC
Confidence 44555554433 3343332 246888888854 888999999999874 577877774
No 274
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*
Probab=26.65 E-value=1.4e+02 Score=27.71 Aligned_cols=93 Identities=13% Similarity=0.144 Sum_probs=51.2
Q ss_pred EEEEecCcHHHHHHHHH-HHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe--c-chHHHHhccccEEEEccee
Q 008627 457 VLLTYGSSSAVEMILQH-AHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVFLGASS 532 (559)
Q Consensus 457 vILT~g~SstV~~iL~~-A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~--D-sAvs~iM~~VdkVlLGAda 532 (559)
+||..|-++.+-..|.. +.++...++|+++.-++.. +..|...++.+.... | .++..++..+|.||.-|-.
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~-----~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~ 75 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAK-----AQALAAQGITVRQADYGDEAALTSALQGVEKLLLISSS 75 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTT-----CHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC--
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHh-----hhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 37788888777544444 4343124677777644432 123444565543322 1 4566778888888865532
Q ss_pred eecCCceecccchHHHHHHHhhCCCC
Q 008627 533 VLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 533 IlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
.. + .|-.||..+.-+|+..++.
T Consensus 76 ~~-~---~~~~~~~~l~~a~~~~~~~ 97 (286)
T 2zcu_A 76 EV-G---QRAPQHRNVINAAKAAGVK 97 (286)
T ss_dssp ----------CHHHHHHHHHHHHTCC
T ss_pred Cc-h---HHHHHHHHHHHHHHHcCCC
Confidence 11 1 3567888888888776653
No 275
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=26.64 E-value=64 Score=34.02 Aligned_cols=96 Identities=11% Similarity=0.054 Sum_probs=48.0
Q ss_pred HHHHH-hcccCCCEEEEecCcHHHHHHHHHHHHh---CCceEEEEcC--CCC---------------CchHHHHHHHHHh
Q 008627 445 VKHAV-TKIRDGDVLLTYGSSSAVEMILQHAHEL---GKQFRVVIVD--SRP---------------KHEGKLLLRRLVR 503 (559)
Q Consensus 445 a~~Aa-~~I~dGdvILT~g~SstV~~iL~~A~e~---Gk~FrViVvE--SRP---------------~~EG~~LAk~L~~ 503 (559)
++.|+ ++|+||++|...+..++=..++....++ -+.++|+-.- ..+ ++-|-. .+++..
T Consensus 14 a~eAv~~~IkdG~tV~~ggf~g~P~~Li~AL~~~~~~~~dLtli~~~~~~~~~~~~~~l~~~i~~~~~~~g~~-~r~~i~ 92 (439)
T 3d3u_A 14 ADEAVVDSLKPGTKVVFGHAAAAPVRFSQAMYRQREKLENITVFHMLYFGDAPHLAPEMRSHVHPTLNFLEGN-SRPASR 92 (439)
T ss_dssp HHHHHHHHCCTTCEEEECCBTTCCHHHHHHHHHTTTTCCSEEEECSCBSSCCTTSSGGGTTTEEEEC-------------
T ss_pred HHHHHHhhCCCcCEEEECcccChHHHHHHHHHHhhCCCCCEEEEEecCCCcchhccHHhCCcEEEEECCCChH-HHHHHH
Confidence 34455 7899999999988864433333333332 2567776431 111 111222 223333
Q ss_pred CC-CceEEEecchH-HHHhc---cccEEEEcceeeecCCceec
Q 008627 504 KG-LSCTYTHINAI-SYIIH---EVTRVFLGASSVLSNGTVCS 541 (559)
Q Consensus 504 ~G-I~vTyI~DsAv-s~iM~---~VdkVlLGAdaIlaNGsVvN 541 (559)
.| +..+-+..+.+ .|+.. .+|..|+.+..+-.+|.+.-
T Consensus 93 ~G~~~~~P~~ls~~~~~l~~~~l~~DVAlI~as~~D~~Gnls~ 135 (439)
T 3d3u_A 93 DRRVDFIPCHFHEVPELFRQGFFPLDVAVVQVSTPNEEGYCSF 135 (439)
T ss_dssp --------CCGGGHHHHHTTSSSCCSEEEEEEECCCTTSEEEC
T ss_pred cCCCeEECCCcchHHHHHHcCCCCCCEEEEEEecCCCCceEEE
Confidence 33 22222222333 34443 58999999999999999755
No 276
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=26.51 E-value=4e+02 Score=27.34 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=64.4
Q ss_pred hcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCC------CCc------------hHHHHHHHHHhC--CCceE
Q 008627 450 TKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR------PKH------------EGKLLLRRLVRK--GLSCT 509 (559)
Q Consensus 450 ~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESR------P~~------------EG~~LAk~L~~~--GI~vT 509 (559)
+.|+ +..||..|..++=..++......|.. ++.++|.. ... ....+++.|.+. ++.++
T Consensus 30 ~kL~-~~~VlIvGaGGlGs~va~~La~aGVg-~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~ 107 (340)
T 3rui_A 30 DIIK-NTKVLLLGAGTLGCYVSRALIAWGVR-KITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDAT 107 (340)
T ss_dssp HHHH-TCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEE
T ss_pred HHHh-CCEEEEECCCHHHHHHHHHHHHcCCC-EEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEE
Confidence 3443 46899999998887788877777754 44444432 211 123456677764 56666
Q ss_pred EEec-------------------chHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 510 YTHI-------------------NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 510 yI~D-------------------sAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.+.. ..+..++.++|.||...|..- --+.+.-+|..+++|+
T Consensus 108 ~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tDn~~---------tR~lin~~c~~~~~pl 167 (340)
T 3rui_A 108 GVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRE---------SRWLPSLLSNIENKTV 167 (340)
T ss_dssp EECCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSTG---------GGHHHHHHHHHTTCEE
T ss_pred EEeccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCCCHH---------HHHHHHHHHHHcCCcE
Confidence 6542 124566788999998887543 2367788888999885
No 277
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=26.47 E-value=3.6e+02 Score=27.98 Aligned_cols=128 Identities=20% Similarity=0.217 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC--CEEEE-ecC--cHHHHHHHHH----HHHhCCceEE-EEcCCCCCc
Q 008627 423 ATLHSDIERFINEKIILADRVIVKHAVTKIRDG--DVLLT-YGS--SSAVEMILQH----AHELGKQFRV-VIVDSRPKH 492 (559)
Q Consensus 423 ~~L~e~Id~fI~ErI~~A~e~Ia~~Aa~~I~dG--dvILT-~g~--SstV~~iL~~----A~e~Gk~FrV-iVvESRP~~ 492 (559)
+...+....|... |.......+..+.++|.+= +.|+. ||- -.-+..+|.. +..+...-+| |+-.|.-++
T Consensus 200 e~~~~~~~~yy~~-i~~p~~~~v~~~L~kl~~Ldi~~I~P~HGpi~r~~~~~ii~~Y~~w~~~~~~~~~v~I~Y~S~yGn 278 (410)
T 4dik_A 200 ERYLPHVTKYIVT-VIGHYKNYILEGAEKLSSLKIKALLPGHGLIWKKDPQRLLNHYVSVAKGDPKKGKVTVIYDSMYGF 278 (410)
T ss_dssp HHHHHHHHHHHHH-HHGGGHHHHHHHHHHHHTSCCSEEEESSSCBBSSCHHHHHHHHHHHHHTCCCTTEEEEEEECSSSH
T ss_pred HHHHHHHHHHHHh-hccchHHHHHHHHHHHhCCCCCEEecCCcchhhcCHHHHHHHHHHhhcccccccceeeEEecccCh
Confidence 3444555556544 3333334445555555432 33433 331 1223444443 2212222244 445666554
Q ss_pred hH---HHHHHHHHhCCCceEEE--ec---chHHHHhc---cccEEEEcceeeecCCceecccchHHHHHHHh
Q 008627 493 EG---KLLLRRLVRKGLSCTYT--HI---NAISYIIH---EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY 553 (559)
Q Consensus 493 EG---~~LAk~L~~~GI~vTyI--~D---sAvs~iM~---~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk 553 (559)
-- ..+++.|.+.|+++.++ .| ..++.++. +++.++||+-++ ||.+.-.+-....-+.+.
T Consensus 279 Te~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~--~~~~~p~~~~~l~~l~~~ 348 (410)
T 4dik_A 279 VENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTY--EAEIHPLMRFTLLEIIDK 348 (410)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECCT--TSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCc--CCcCCHHHHHHHHHHHhc
Confidence 32 24467777899998754 33 34677766 699999999887 577776665554444443
No 278
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=26.35 E-value=44 Score=27.51 Aligned_cols=36 Identities=17% Similarity=0.130 Sum_probs=21.8
Q ss_pred ceEEEEcCCC-CCchHHHHHHHHHhC----CCceEEEecch
Q 008627 480 QFRVVIVDSR-PKHEGKLLLRRLVRK----GLSCTYTHINA 515 (559)
Q Consensus 480 ~FrViVvESR-P~~EG~~LAk~L~~~----GI~vTyI~DsA 515 (559)
.+.++++|-. |...|..+++.|.+. ++++.+++...
T Consensus 46 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 86 (140)
T 3n53_A 46 HPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSE 86 (140)
T ss_dssp CCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC-
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCC
Confidence 4788888854 778899999999874 57777777543
No 279
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=26.34 E-value=97 Score=30.55 Aligned_cols=105 Identities=17% Similarity=0.121 Sum_probs=53.7
Q ss_pred ccCCCEEEEecCcHHHHHHHHHHHHhC---CceEEEEcCCCCCchHHHHH-HH---HHhCCCceEEEecc---------h
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHAHELG---KQFRVVIVDSRPKHEGKLLL-RR---LVRKGLSCTYTHIN---------A 515 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A~e~G---k~FrViVvESRP~~EG~~LA-k~---L~~~GI~vTyI~Ds---------A 515 (559)
+....+|+|-|.+..+..++....+.| ..-+|++.| .|.+.|...+ .. +...+..+..+... +
T Consensus 96 ~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 174 (417)
T 3g7q_A 96 IEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPL-APEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEH 174 (417)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHSBC----CCBEEEESS-CCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGG
T ss_pred CCcccEEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeC-CCccccchhhccchhhhccccCcccccCCcccccccCHHH
Confidence 445578888887777776666554332 223677754 3667666432 21 22334444444322 1
Q ss_pred HHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 516 ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 516 vs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+- +-+++..|++- ..--..|.++..---..|+-+|++|++.+
T Consensus 175 l~-~~~~~~~v~~~-~p~NptG~~~~~~~~~~l~~~a~~~~~~l 216 (417)
T 3g7q_A 175 LH-IGEETGMICVS-RPTNPTGNVITDEELMKLDRLANQHNIPL 216 (417)
T ss_dssp CC-CCTTEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCCE
T ss_pred hc-cccCceEEEEC-CCCCCCCCccCHHHHHHHHHHHHHcCCEE
Confidence 11 11223334332 12233455555444566777899998864
No 280
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=26.17 E-value=2.2e+02 Score=27.94 Aligned_cols=98 Identities=15% Similarity=0.133 Sum_probs=49.1
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecch----------HHHHhc-c
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA----------ISYIIH-E 522 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsA----------vs~iM~-~ 522 (559)
..++++|-|.+..+..++....+.| -+|+|.+ |.+.+.. ..+...|+.+..+.... +-..+. +
T Consensus 91 ~~~i~~t~g~~~al~~~~~~l~~~g--d~Vlv~~--p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 164 (385)
T 1b5p_A 91 PEETIVTVGGSQALFNLFQAILDPG--DEVIVLS--PYWVSYP--EMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPR 164 (385)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCTHHH--HHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTT
T ss_pred hHHEEEcCChHHHHHHHHHHhcCCC--CEEEEcC--CCchhHH--HHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCCC
Confidence 3467777777777666665544333 2455543 4554433 23335688877776321 111122 2
Q ss_pred ccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 523 VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
...|++ ++---+.|.+++.-=-..|+-+|+.||+.
T Consensus 165 ~~~v~~-~~p~NPtG~~~~~~~l~~i~~~~~~~~~~ 199 (385)
T 1b5p_A 165 TKALVV-NSPNNPTGAVYPKEVLEALARLAVEHDFY 199 (385)
T ss_dssp EEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCE
T ss_pred CEEEEE-eCCCCCCCCCcCHHHHHHHHHHHHHcCCE
Confidence 223332 22222334444443335566778888764
No 281
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}
Probab=26.13 E-value=1.1e+02 Score=31.94 Aligned_cols=103 Identities=15% Similarity=0.044 Sum_probs=58.8
Q ss_pred cCCCEEEEecCcHHHH-HHHHHHHHhCC-ceEEEEcCCCCCchHHHHHHHH------------------HhCCCceEEEe
Q 008627 453 RDGDVLLTYGSSSAVE-MILQHAHELGK-QFRVVIVDSRPKHEGKLLLRRL------------------VRKGLSCTYTH 512 (559)
Q Consensus 453 ~dGdvILT~g~SstV~-~iL~~A~e~Gk-~FrViVvESRP~~EG~~LAk~L------------------~~~GI~vTyI~ 512 (559)
..+.+||..|-++-+- .+++...+.+. ..+|+++.-++..+ ...++| ...++.+....
T Consensus 71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 148 (478)
T 4dqv_A 71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDE--DARRRLEKTFDSGDPELLRHFKELAADRLEVVAGD 148 (478)
T ss_dssp SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHH--HHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcH--HHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeE
Confidence 3567899999887774 44444455422 36888886554432 111111 11233332222
Q ss_pred c---------chHHHHhccccEEEEcceeeecCC----ceecccchHHHHHHHhhCCC
Q 008627 513 I---------NAISYIIHEVTRVFLGASSVLSNG----TVCSRVGTACVAMVAYGFHI 557 (559)
Q Consensus 513 D---------sAvs~iM~~VdkVlLGAdaIlaNG----sVvNKvGT~~IALaAk~~~V 557 (559)
. ..+..++.++|.||--|-.+-.+. .-+|-.||..++-+|+.+++
T Consensus 149 l~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~ 206 (478)
T 4dqv_A 149 KSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAFPYHELFGPNVAGTAELIRIALTTKL 206 (478)
T ss_dssp TTSGGGGCCHHHHHHHHHHCCEEEECCSSCSBSSCCEEHHHHHHHHHHHHHHHTSSSC
T ss_pred CCCcccCCCHHHHHHHHcCCCEEEECccccCCcCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 2 146667778888876553322111 12477899999999988876
No 282
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=26.13 E-value=2.2e+02 Score=26.81 Aligned_cols=76 Identities=18% Similarity=0.198 Sum_probs=49.9
Q ss_pred CCCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhc------
Q 008627 454 DGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH------ 521 (559)
Q Consensus 454 dGdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~------ 521 (559)
.|.+||..|-|+-+- .+.+...++| .+|+++..|......+++++|.+.|..+.++. | .++..++.
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G--~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENG--YNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETF 80 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 466788888776664 4444444544 68888777766666778888888888887764 3 23444444
Q ss_pred -cccEEEEcce
Q 008627 522 -EVTRVFLGAS 531 (559)
Q Consensus 522 -~VdkVlLGAd 531 (559)
++|.||--|-
T Consensus 81 g~id~lv~nAg 91 (258)
T 3oid_A 81 GRLDVFVNNAA 91 (258)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 4688887663
No 283
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=26.11 E-value=4.4e+02 Score=25.44 Aligned_cols=95 Identities=11% Similarity=0.028 Sum_probs=48.1
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---chHHHHhccc---cEEEEc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHEV---TRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D---sAvs~iM~~V---dkVlLG 529 (559)
+.|++-+-+..+..++....+.| -.|++. .|.+... ...+...|.++..+.. ..+-..+.+. +++++=
T Consensus 101 ~~i~~~sGt~a~~~~~~~~~~~g--d~v~~~--~~~~~~~--~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~ 174 (384)
T 1bs0_A 101 RALLFISGFAANQAVIAAMMAKE--DRIAAD--RLSHASL--LEAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVT 174 (384)
T ss_dssp EEEEESCHHHHHHHHHHHHCCTT--CEEEEE--TTCCHHH--HHHHHTSSSEEEEECTTCHHHHHHHHHSCCSSCEEEEE
T ss_pred cEEEeCCcHHHHHHHHHHhCCCC--cEEEEc--ccccHHH--HHHHHHcCCCEEEeCCCCHHHHHHHHHhcCCCCeEEEE
Confidence 44555444655555554432223 244333 3455433 3334456888887763 2333344432 344433
Q ss_pred ceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
...--..|.++. -..|+-+|++|++.|
T Consensus 175 ~~~~nptG~~~~---l~~i~~l~~~~~~~l 201 (384)
T 1bs0_A 175 EGVFSMDGDSAP---LAEIQQVTQQHNGWL 201 (384)
T ss_dssp ESBCTTTCCBCC---HHHHHHHHHHTTCEE
T ss_pred eCCCCCCCCccC---HHHHHHHHHHcCcEE
Confidence 222234566665 356777888888753
No 284
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=26.07 E-value=2.1e+02 Score=26.49 Aligned_cols=76 Identities=17% Similarity=0.154 Sum_probs=49.4
Q ss_pred CCCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhc------
Q 008627 454 DGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH------ 521 (559)
Q Consensus 454 dGdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~------ 521 (559)
.+.+||..|-|+-+- .+.+...++| .+|++++.|.......++.++.+.|..+.++. | ..+..++.
T Consensus 12 ~~k~vlITGas~giG~~ia~~l~~~G--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 89 (256)
T 3ezl_A 12 SQRIAYVTGGMGGIGTSICQRLHKDG--FRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAEV 89 (256)
T ss_dssp -CEEEEETTTTSHHHHHHHHHHHHTT--EEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHhc
Confidence 456778877776664 4444445544 68888887776677778888888888877654 2 23444444
Q ss_pred -cccEEEEcce
Q 008627 522 -EVTRVFLGAS 531 (559)
Q Consensus 522 -~VdkVlLGAd 531 (559)
++|.||--|-
T Consensus 90 g~id~lv~~Ag 100 (256)
T 3ezl_A 90 GEIDVLVNNAG 100 (256)
T ss_dssp CCEEEEEECCC
T ss_pred CCCCEEEECCC
Confidence 5677776663
No 285
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Probab=26.05 E-value=1.9e+02 Score=28.40 Aligned_cols=101 Identities=14% Similarity=0.101 Sum_probs=52.9
Q ss_pred CCEEEEecCcHHHH-HHHHHHH-HhCCceEEEEcCCCCCch--------HHHHHHHHHhC-C----Cc---eEEE-ec--
Q 008627 455 GDVLLTYGSSSAVE-MILQHAH-ELGKQFRVVIVDSRPKHE--------GKLLLRRLVRK-G----LS---CTYT-HI-- 513 (559)
Q Consensus 455 GdvILT~g~SstV~-~iL~~A~-e~Gk~FrViVvESRP~~E--------G~~LAk~L~~~-G----I~---vTyI-~D-- 513 (559)
+.+||..|-++-|- .++..+. +.| .+|++++-.+... -..+...|.+. + -. ++++ .|
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 79 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTN--HSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVR 79 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCC--CEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCC--CEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCC
Confidence 35788888877664 4444454 545 6788776443321 22333323322 1 12 4443 23
Q ss_pred --chHHHHhc--c-ccEEEEcceeeecCC--------ceecccchHHHHHHHhhCCC
Q 008627 514 --NAISYIIH--E-VTRVFLGASSVLSNG--------TVCSRVGTACVAMVAYGFHI 557 (559)
Q Consensus 514 --sAvs~iM~--~-VdkVlLGAdaIlaNG--------sVvNKvGT~~IALaAk~~~V 557 (559)
.++..++. . +|.||--|-...... .-+|-.||..+.-+|+..++
T Consensus 80 d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~ 136 (397)
T 1gy8_A 80 NEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKC 136 (397)
T ss_dssp CHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCC
Confidence 34555665 3 777766553221100 01356788888888877765
No 286
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1
Probab=26.04 E-value=2e+02 Score=28.63 Aligned_cols=40 Identities=23% Similarity=0.427 Sum_probs=27.6
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCC
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK 491 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~ 491 (559)
.+..|++||.+|.+.+=..++..|+..|-. +||+++..+.
T Consensus 189 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~-~Vi~~~~~~~ 228 (374)
T 1cdo_A 189 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAK-RIIAVDLNPD 228 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCS-EEEEECSCGG
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCHH
Confidence 477899999999654445566666665532 7888886654
No 287
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=25.99 E-value=1.9e+02 Score=28.38 Aligned_cols=98 Identities=13% Similarity=0.155 Sum_probs=53.8
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc-------------------h
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------------------A 515 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds-------------------A 515 (559)
..+++|.|.+..+..++..+.+.|. +|++. .|.+.+... .+...|+.+.++... .
T Consensus 86 ~~i~~~~g~~~a~~~~~~~~~~~gd--~vl~~--~p~~~~~~~--~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~ 159 (410)
T 3e2y_A 86 EEILVAVGAYGSLFNSIQGLVDPGD--EVIIM--VPFYDCYEP--MVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRE 159 (410)
T ss_dssp TSEEEESHHHHHHHHHHHHHCCTTC--EEEEE--ESCCTTHHH--HHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHH
T ss_pred CCEEEeCCcHHHHHHHHHHhcCCCC--EEEEe--CCCchhhHH--HHHHcCCEEEEEeccccccccccccccCCcCCHHH
Confidence 5788888877777777766544343 55554 455554432 334467777766532 2
Q ss_pred HHHHhc-cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 516 ISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 516 vs~iM~-~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+-..+. ++..|++- ..--..|.++.+---..|+-+|++||+.+
T Consensus 160 l~~~~~~~~~~v~~~-~p~nptG~~~~~~~l~~l~~~~~~~~~~l 203 (410)
T 3e2y_A 160 LESKFSSKTKAIILN-TPHNPLGKVYTRQELQVIADLCVKHDTLC 203 (410)
T ss_dssp HHTTCCTTEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHHTCEE
T ss_pred HHhhcCCCceEEEEe-CCCCCCCcCcCHHHHHHHHHHHHHcCcEE
Confidence 222222 34445442 22234455554444556777788888753
No 288
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, hydrolase, protein-ligand complex; HET: NLA; 1.50A {Homo sapiens} SCOP: c.44.1.1 PDB: 5pnt_A* 1xww_A 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A
Probab=25.90 E-value=83 Score=28.55 Aligned_cols=70 Identities=10% Similarity=0.029 Sum_probs=44.8
Q ss_pred cCcHHHHHHHHHHHH-hCC--ceEEEEcCCCCCchHH----HHHHHHHhCCCceEEEecchHHHHhccccEEEEcce
Q 008627 462 GSSSAVEMILQHAHE-LGK--QFRVVIVDSRPKHEGK----LLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGAS 531 (559)
Q Consensus 462 g~SstV~~iL~~A~e-~Gk--~FrViVvESRP~~EG~----~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAd 531 (559)
|+|...+.+|++... .|. .|.|.-.-+.++..|. ...+.|.+.||++....-.--...+.+.|.||.=.+
T Consensus 17 cRSpmAE~~~~~~~~~~gl~~~~~v~SAGt~~~~~G~~~~~~a~~~l~~~Gid~~~~ar~l~~~~~~~~DlIi~M~~ 93 (157)
T 3n8i_A 17 CRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRGQSCMKRHGIPMSHVARQITKEDFATFDYILCMDE 93 (157)
T ss_dssp SHHHHHHHHHHHHHHHTTCGGGEEEEEEESSSTTTTCCCCHHHHHHHHHTTCCCCCCCCBCCHHHHHHCSEEEESSH
T ss_pred hHHHHHHHHHHHHHHHcCCCCcEEEEeeecCccccCCCCCHHHHHHHHHcCcCCCCceeECCHHHcCCCCEEEEeCc
Confidence 678899999998654 343 5888888788876553 457888899998522211111123456777765433
No 289
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=25.89 E-value=1e+02 Score=29.49 Aligned_cols=75 Identities=17% Similarity=0.170 Sum_probs=48.9
Q ss_pred CCCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhc------
Q 008627 454 DGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH------ 521 (559)
Q Consensus 454 dGdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~------ 521 (559)
.|.+||..|-|+-+- .+.+...++| .+|++++.|.......++.++...|-.+.++. | .++..++.
T Consensus 26 ~~k~~lVTGas~GIG~aia~~la~~G--~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 103 (267)
T 3u5t_A 26 TNKVAIVTGASRGIGAAIAARLASDG--FTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAF 103 (267)
T ss_dssp -CCEEEEESCSSHHHHHHHHHHHHHT--CEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 467777777776654 4444444555 68888877777777788888888887777663 3 23444443
Q ss_pred -cccEEEEcc
Q 008627 522 -EVTRVFLGA 530 (559)
Q Consensus 522 -~VdkVlLGA 530 (559)
.+|.+|--|
T Consensus 104 g~iD~lvnnA 113 (267)
T 3u5t_A 104 GGVDVLVNNA 113 (267)
T ss_dssp SCEEEEEECC
T ss_pred CCCCEEEECC
Confidence 577776665
No 290
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=25.88 E-value=3.4e+02 Score=23.96 Aligned_cols=78 Identities=13% Similarity=0.200 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH-HHHHhcC--------chhhhHHHHHHHHHHHHHhccCCCCHHHH
Q 008627 351 CIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYV-SFLIDCR--------PLSVSMGNAIRFLKSQIAKIPISLSESEA 421 (559)
Q Consensus 351 aiA~L~aLk~vI~dy~tp~~~~lsrdL~~~L~~~i-~~L~~aR--------PtsvsmgNAIrrlk~~I~~l~~~~s~~ea 421 (559)
.+++++-|+..|..-...++ -++..+.++..| +|+..-| ++-..|.+||+-|-.........-=.++.
T Consensus 20 T~~Vv~~lr~~l~l~~d~~~---~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sf~tm~tAlNaLAGHY~s~g~~PlPek~ 96 (115)
T 2kmf_A 20 TLTVIATLREAIDLPQDAPN---RQEVQDTARGQINDYISRYRRKGDAGGLKSFTTMQTALNSLAGYYTSYGARPIPEKL 96 (115)
T ss_dssp HHHHHHHHHHHHHSCTTCTT---HHHHHHHHHHHHHHHHHHTHHHHCSSSCHHHHHHHHHHHHHHHHHHHHSSCCCCHHH
T ss_pred HHHHHHHHHHHHcCCCCCcc---HHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHHhhcCCCCCCHHH
Confidence 45677778888874322221 233444443333 2333333 34457999999998887765422225677
Q ss_pred HHHHHHHHHH
Q 008627 422 KATLHSDIER 431 (559)
Q Consensus 422 K~~L~e~Id~ 431 (559)
|+.|.++++.
T Consensus 97 k~Rl~~el~~ 106 (115)
T 2kmf_A 97 KKRLQLEFTQ 106 (115)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776643
No 291
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=25.74 E-value=2.3e+02 Score=26.23 Aligned_cols=75 Identities=16% Similarity=0.241 Sum_probs=48.8
Q ss_pred CCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhc-------
Q 008627 455 GDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH------- 521 (559)
Q Consensus 455 GdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~------- 521 (559)
+.+||.-|-++-+- .+.+...++| .+|++++.+.......++++|...|..+.++. | ..+..++.
T Consensus 4 ~k~~lVTGas~gIG~~ia~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 81 (246)
T 3osu_A 4 TKSALVTGASRGIGRSIALQLAEEG--YNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFG 81 (246)
T ss_dssp SCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45677777776654 4444444544 67888877766667778888888888877663 3 23444444
Q ss_pred cccEEEEcce
Q 008627 522 EVTRVFLGAS 531 (559)
Q Consensus 522 ~VdkVlLGAd 531 (559)
++|.||--|-
T Consensus 82 ~id~lv~nAg 91 (246)
T 3osu_A 82 SLDVLVNNAG 91 (246)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 5788776663
No 292
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=25.73 E-value=69 Score=26.80 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=26.6
Q ss_pred CceEEEEcCCC-CCchHHHHHHHHHhCC--CceEEEec
Q 008627 479 KQFRVVIVDSR-PKHEGKLLLRRLVRKG--LSCTYTHI 513 (559)
Q Consensus 479 k~FrViVvESR-P~~EG~~LAk~L~~~G--I~vTyI~D 513 (559)
..+.++++|-. |...|.++++.|.+.+ +++.+++.
T Consensus 65 ~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~ 102 (150)
T 4e7p_A 65 ESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTT 102 (150)
T ss_dssp SCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEES
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeC
Confidence 45888888854 7889999999999864 55555554
No 293
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=25.65 E-value=3.2e+02 Score=23.43 Aligned_cols=57 Identities=11% Similarity=0.168 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHhcCc-hhhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Q 008627 376 DLTAKISSYVSFLIDCRP-LSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEK 436 (559)
Q Consensus 376 dL~~~L~~~i~~L~~aRP-tsvsmgNAIrrlk~~I~~l~~~~s~~eaK~~L~e~Id~fI~Er 436 (559)
.|.+.++.++...+..+- ..++....+..|.-..+.. -.+++|..|+..|..|+.+.
T Consensus 41 GW~Devr~~~r~~i~~~g~~~vt~~~L~~~I~P~Ar~~----VP~~VK~Ell~rIr~fL~~~ 98 (101)
T 4dhx_B 41 GWKDQLKAHCKEVIKEKGLEHVTVDDLVAEITPKGRAL----VPDSVKKELLQRIRTFLAQH 98 (101)
T ss_dssp THHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHHHHH----CCHHHHHHHHHHHHHHHHHh
Confidence 467777777766665554 4677777788777666543 25689999999999999764
No 294
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=25.64 E-value=90 Score=29.74 Aligned_cols=96 Identities=15% Similarity=0.075 Sum_probs=52.7
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHH-----HHh-ccccEEEE
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS-----YII-HEVTRVFL 528 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs-----~iM-~~VdkVlL 528 (559)
..+++|.|.+..+..++..+.+.| -+|++.+ |.+-+..+...+...|+.+.++....-+ .+- +++..|++
T Consensus 52 ~~i~~~~g~t~a~~~~~~~~~~~g--d~vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~v~~ 127 (352)
T 1iug_A 52 EVLILTGSGTLAMEALVKNLFAPG--ERVLVPV--YGKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVAKEGYAGLLL 127 (352)
T ss_dssp EEEEEESCHHHHHHHHHHHHCCTT--CEEEEEE--CSHHHHHHHHHHHHTTCEEEEEECCTTCCCCTTTSCCSSCSEEEE
T ss_pred ceEEEcCchHHHHHHHHHhccCCC--CeEEEEe--CCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHhccCCcEEEE
Confidence 356677676666666666554433 3566653 4555554444455679988887632111 111 23444444
Q ss_pred cceeeecCCceecccchHHHHHHHhhC--CCC
Q 008627 529 GASSVLSNGTVCSRVGTACVAMVAYGF--HIP 558 (559)
Q Consensus 529 GAdaIlaNGsVvNKvGT~~IALaAk~~--~VP 558 (559)
.+.-...|.++. -..|+-+|++| |+.
T Consensus 128 -~~~~nptG~~~~---l~~i~~l~~~~~~~~~ 155 (352)
T 1iug_A 128 -VHSETSTGALAD---LPALARAFKEKNPEGL 155 (352)
T ss_dssp -ESEETTTTEECC---HHHHHHHHHHHCTTCE
T ss_pred -EEecCCcceecC---HHHHHHHHHhhCCCCE
Confidence 333334466554 34677778887 765
No 295
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=25.52 E-value=1.8e+02 Score=28.27 Aligned_cols=100 Identities=14% Similarity=0.121 Sum_probs=52.9
Q ss_pred cCCC-EEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc----------hHHHHhc
Q 008627 453 RDGD-VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH 521 (559)
Q Consensus 453 ~dGd-vILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds----------Avs~iM~ 521 (559)
...+ +++|.|-+..+..++..+.+.| -+|++.+ |.+.|... .+...|+++..+... .+-..+.
T Consensus 85 ~~~~~v~~~~g~~~a~~~~~~~~~~~g--d~vl~~~--~~~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~ 158 (389)
T 1gd9_A 85 DPKTEIMVLLGANQAFLMGLSAFLKDG--EEVLIPT--PAFVSYAP--AVILAGGKPVEVPTYEEDEFRLNVDELKKYVT 158 (389)
T ss_dssp CTTTSEEEESSTTHHHHHHHTTTCCTT--CEEEEEE--SCCTTHHH--HHHHHTCEEEEEECCGGGTTCCCHHHHHHHCC
T ss_pred CCCCeEEEcCChHHHHHHHHHHhCCCC--CEEEEcC--CCchhHHH--HHHHCCCEEEEeccCCccCCCCCHHHHHHhcC
Confidence 3456 8888888888777766554333 3555553 45555433 233467887777622 1222222
Q ss_pred -cccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 522 -~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
++..|++ ...--..|.++..-=-..|+-+|++||+.+
T Consensus 159 ~~~~~v~~-~~~~nptG~~~~~~~l~~l~~~~~~~~~~l 196 (389)
T 1gd9_A 159 DKTRALII-NSPCNPTGAVLTKKDLEEIADFVVEHDLIV 196 (389)
T ss_dssp TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred cCceEEEE-ECCCCCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence 2334444 222222354444333345666788888753
No 296
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=25.48 E-value=96 Score=29.15 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=18.2
Q ss_pred EEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhc
Q 008627 484 VIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH 521 (559)
Q Consensus 484 iVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~ 521 (559)
-|+-+---+.+.++++.|.+.|++|.+|.-.+...++.
T Consensus 7 gvTGs~aa~k~~~l~~~L~~~g~~V~vv~T~~A~~~i~ 44 (189)
T 2ejb_A 7 CITGASGVIYGIKLLQVLEELDFSVDLVISRNAKVVLK 44 (189)
T ss_dssp EECSSTTHHHHHHHHHHHHHTTCEEEEEECHHHHHHHH
T ss_pred EEECHHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHhh
Confidence 33444334445555555555555555554444444443
No 297
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=25.45 E-value=91 Score=29.72 Aligned_cols=91 Identities=13% Similarity=0.074 Sum_probs=42.7
Q ss_pred CCEEEEecCcHHHHHHH-HHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhcc--ccEEEEcce
Q 008627 455 GDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE--VTRVFLGAS 531 (559)
Q Consensus 455 GdvILT~g~SstV~~iL-~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~--VdkVlLGAd 531 (559)
+.+||..|-++-+-..| ..+.++| .+|++++-++...+ -+.+-+.....+..++.. +|.||--|-
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~----------~~~~Dl~d~~~~~~~~~~~~~d~vih~A~ 69 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNN--WHAVGCGFRRARPK----------FEQVNLLDSNAVHHIIHDFQPHVIVHCAA 69 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTT--CEEEEEC----------------------------CHHHHHHHCCSEEEECC-
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC--CeEEEEccCCCCCC----------eEEecCCCHHHHHHHHHhhCCCEEEECCc
Confidence 35788889888775444 4444444 68888763222111 122222223445555654 788776653
Q ss_pred eeecC--------CceecccchHHHHHHHhhCCC
Q 008627 532 SVLSN--------GTVCSRVGTACVAMVAYGFHI 557 (559)
Q Consensus 532 aIlaN--------GsVvNKvGT~~IALaAk~~~V 557 (559)
....+ -.-+|-.||..+.-+|+..++
T Consensus 70 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~ 103 (315)
T 2ydy_A 70 ERRPDVVENQPDAASQLNVDASGNLAKEAAAVGA 103 (315)
T ss_dssp ------------------CHHHHHHHHHHHHHTC
T ss_pred ccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 32211 112477889988888876654
No 298
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=25.38 E-value=2.9e+02 Score=27.21 Aligned_cols=97 Identities=20% Similarity=0.261 Sum_probs=51.4
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-----------chHHHHhc-cc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-----------NAISYIIH-EV 523 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D-----------sAvs~iM~-~V 523 (559)
++++|-|.+..+..++..+.+.| -+|++.+ |.+.|... .+...|+.+.++.. ..+-..+. ++
T Consensus 88 ~v~~t~g~~~al~~~~~~~~~~g--d~Vl~~~--~~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~ 161 (411)
T 2o0r_A 88 EVLVTVGATEAIAAAVLGLVEPG--SEVLLIE--PFYDSYSP--VVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRT 161 (411)
T ss_dssp SEEEEEHHHHHHHHHHHHHCCTT--CEEEEEE--SCCTTHHH--HHHHTTCEEEEEECEEETTEEECCHHHHHHHCCTTE
T ss_pred eEEEeCCHHHHHHHHHHHhcCCC--CEEEEeC--CCcHhHHH--HHHHcCCEEEEeeccccccCCCCCHHHHHHhhccCc
Confidence 78888888877777766654333 3566543 45555432 34457887776652 12222332 33
Q ss_pred cEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 524 dkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
..|++- ..--..|.++..-=-..|+-+|++||+.+
T Consensus 162 ~~v~l~-~~~nptG~~~~~~~l~~i~~~~~~~~~~l 196 (411)
T 2o0r_A 162 RALIIN-SPHNPTGAVLSATELAAIAEIAVAANLVV 196 (411)
T ss_dssp EEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred eEEEEe-CCCCCCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 344432 22223344433222246677888888753
No 299
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=25.37 E-value=2.5e+02 Score=26.47 Aligned_cols=76 Identities=18% Similarity=0.212 Sum_probs=49.6
Q ss_pred CCCEEEEecCcHHH-HHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhc------
Q 008627 454 DGDVLLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH------ 521 (559)
Q Consensus 454 dGdvILT~g~SstV-~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~------ 521 (559)
.|.+||..|-++-+ ..+.+...++| .+|++++.+.......+...|.+.|..+.++. | ..+..++.
T Consensus 28 ~~k~vlITGas~gIG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 105 (271)
T 4iin_A 28 TGKNVLITGASKGIGAEIAKTLASMG--LKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSD 105 (271)
T ss_dssp SCCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence 46678888777665 44445555544 57888876665556677888888888887764 3 23333333
Q ss_pred -cccEEEEcce
Q 008627 522 -EVTRVFLGAS 531 (559)
Q Consensus 522 -~VdkVlLGAd 531 (559)
++|.||--|-
T Consensus 106 g~id~li~nAg 116 (271)
T 4iin_A 106 GGLSYLVNNAG 116 (271)
T ss_dssp SSCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 6788887764
No 300
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=25.25 E-value=2.3e+02 Score=25.47 Aligned_cols=58 Identities=10% Similarity=0.074 Sum_probs=40.1
Q ss_pred EEEEecCcHHHHHHHHHHHH--------hCCceEEEEcCC-CCCchHHHHHHHHHh------CCCceEEEecc
Q 008627 457 VLLTYGSSSAVEMILQHAHE--------LGKQFRVVIVDS-RPKHEGKLLLRRLVR------KGLSCTYTHIN 514 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e--------~Gk~FrViVvES-RP~~EG~~LAk~L~~------~GI~vTyI~Ds 514 (559)
.|.+.....-+...|..... .+..+.++++|- -|...|.++++.|.+ ..+++.+++..
T Consensus 88 ~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~ 160 (206)
T 3mm4_A 88 EVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGH 160 (206)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESS
T ss_pred eeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECC
Confidence 56676666655555554311 124688998884 588899999999987 46788888754
No 301
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=25.22 E-value=1.2e+02 Score=29.06 Aligned_cols=95 Identities=11% Similarity=0.105 Sum_probs=53.4
Q ss_pred CEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe---cchHHHHhccccEEEEcce
Q 008627 456 DVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH---INAISYIIHEVTRVFLGAS 531 (559)
Q Consensus 456 dvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~---DsAvs~iM~~VdkVlLGAd 531 (559)
.+||..|-++.+- .+++.+.++| .+|++++-++... ..|...++.+.... ..++..++..+|.||--|-
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~-----~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~ 86 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAAG--HDLVLIHRPSSQI-----QRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAG 86 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT--CEEEEEECTTSCG-----GGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC--CEEEEEecChHhh-----hhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 4799999887774 4444455555 6788776544321 12333355443222 1356677788888887654
Q ss_pred eeecC-Cc-----eecccchHHHHHHHhhCCC
Q 008627 532 SVLSN-GT-----VCSRVGTACVAMVAYGFHI 557 (559)
Q Consensus 532 aIlaN-Gs-----VvNKvGT~~IALaAk~~~V 557 (559)
..... .. -+|-.||..+.-+|+.+++
T Consensus 87 ~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~ 118 (342)
T 2x4g_A 87 YYPSRPRRWQEEVASALGQTNPFYAACLQARV 118 (342)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 32110 00 1467788888888887665
No 302
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=25.21 E-value=2.3e+02 Score=29.23 Aligned_cols=95 Identities=18% Similarity=0.218 Sum_probs=50.0
Q ss_pred EEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHH-HHH-HHHhCCCceEEEecc---hHHHHhccccEEEEcce
Q 008627 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LLR-RLVRKGLSCTYTHIN---AISYIIHEVTRVFLGAS 531 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~-LAk-~L~~~GI~vTyI~Ds---Avs~iM~~VdkVlLGAd 531 (559)
.|++-+-+..+..+|....+.| -+|++. .|.+.|.. +.. .+...|+.++++... ++...+..-+++|+ .+
T Consensus 100 ~v~~~sG~~Ai~~al~al~~~G--d~Vi~~--~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai~~~t~~v~-~e 174 (430)
T 3ri6_A 100 VLALGSGMAAISTAILTLARAG--DSVVTT--DRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHACDETTKLLF-LE 174 (430)
T ss_dssp EEEESCHHHHHHHHHHHHCCTT--CEEEEE--TTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHCCTTEEEEE-EE
T ss_pred EEEECCHHHHHHHHHHHHhCCC--CEEEEc--CCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhhCCCCeEEE-EE
Confidence 3444333333444444443333 355554 35565553 333 566789999999743 34444443334444 22
Q ss_pred ee-ecCCceecccchHHHHHHHhhCCCCC
Q 008627 532 SV-LSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 532 aI-laNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.. -..|.++. -..|+-+|+++|++|
T Consensus 175 ~p~NptG~~~d---l~~i~~la~~~g~~l 200 (430)
T 3ri6_A 175 TISNPQLQVAD---LEALSKVVHAKGIPL 200 (430)
T ss_dssp SSCTTTCCCCC---HHHHHHHHHTTTCCE
T ss_pred CCCCCCCeecC---HHHHHHHHHHcCCEE
Confidence 22 23444443 346778899999875
No 303
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=25.20 E-value=2.3e+02 Score=24.23 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=0.0
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHH----hccccEEEEcc
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI----IHEVTRVFLGA 530 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~i----M~~VdkVlLGA 530 (559)
...|+.+|+..+-..+...+.+.| ++|+++|..| .+-.+.+.++...|+.+.+........+ +.++|.||+..
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g--~~V~vid~~~-~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 79 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRG--QNVTVISNLP-EDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTT--CCEEEEECCC-HHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CCEEEEECCC-hHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEec
Q ss_pred e
Q 008627 531 S 531 (559)
Q Consensus 531 d 531 (559)
+
T Consensus 80 ~ 80 (153)
T 1id1_A 80 D 80 (153)
T ss_dssp S
T ss_pred C
No 304
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=25.20 E-value=2.4e+02 Score=27.23 Aligned_cols=75 Identities=19% Similarity=0.220 Sum_probs=48.0
Q ss_pred CCCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhc------
Q 008627 454 DGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH------ 521 (559)
Q Consensus 454 dGdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~------ 521 (559)
.|.+||..|-|+-+- .+.+...+.| .+|++++-+ .....+++.+|...|..+.++. | .++..++.
T Consensus 30 ~gk~vlVTGas~gIG~~la~~l~~~G--~~V~~~~r~-~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 106 (301)
T 3tjr_A 30 DGRAAVVTGGASGIGLATATEFARRG--ARLVLSDVD-QPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLL 106 (301)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESC-HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECC-HHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhC
Confidence 466788888776664 4455555555 578887543 3345567888888888887764 3 23444443
Q ss_pred -cccEEEEcce
Q 008627 522 -EVTRVFLGAS 531 (559)
Q Consensus 522 -~VdkVlLGAd 531 (559)
.+|.||-.|-
T Consensus 107 g~id~lvnnAg 117 (301)
T 3tjr_A 107 GGVDVVFSNAG 117 (301)
T ss_dssp SSCSEEEECCC
T ss_pred CCCCEEEECCC
Confidence 5788877664
No 305
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Probab=25.15 E-value=1.7e+02 Score=27.56 Aligned_cols=61 Identities=11% Similarity=0.053 Sum_probs=39.9
Q ss_pred HHHHHHHhCCceEEEEcCCCCCch--HHHHHHHHHhCCCceEEEe-cchHHHH-hcc------ccEEEEcce
Q 008627 470 ILQHAHELGKQFRVVIVDSRPKHE--GKLLLRRLVRKGLSCTYTH-INAISYI-IHE------VTRVFLGAS 531 (559)
Q Consensus 470 iL~~A~e~Gk~FrViVvESRP~~E--G~~LAk~L~~~GI~vTyI~-DsAvs~i-M~~------VdkVlLGAd 531 (559)
.|....++|++. |+++-..|..- |..+++.|.+.||++.+|+ .+++.++ ++- -++.|++.+
T Consensus 67 ~i~~~~~~g~~V-~~l~~GDP~i~~~~~~l~~~l~~~gi~v~viPGiSs~~aag~pl~~~~~~~~~~~~~~~ 137 (239)
T 1va0_A 67 LLLRHARAHPFV-VRLKGGDPMVFGRGGEEVLFLLRHGVPVEVVPGVTSLLASGLPLTHRGLAHGFAAVSGV 137 (239)
T ss_dssp HHHHHHHTSSEE-EEEESBCTTSSSSHHHHHHHHHHTTCCEEEECCCCGGGTTCCCSSBTTTBSEEEEEESS
T ss_pred HHHHHHHCCCcE-EEEeCCCCccccCHHHHHHHHHHCCCcEEEECCcchHhhcCCCcccCCccceEEEEecc
Confidence 333444456654 44466778764 6678889999999999998 5666666 111 257777765
No 306
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=25.14 E-value=47 Score=30.93 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=30.9
Q ss_pred HHHHHhCCCceEEEecchHHHHhccccEEEEcceeeecCCceecccch
Q 008627 498 LRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGT 545 (559)
Q Consensus 498 Ak~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT 545 (559)
++.|.+.|++|.++....+..-+.+.|.||+|+-+. +|.+-..+-.
T Consensus 43 a~~l~~~g~~v~v~~l~~~~~~l~~~d~vi~g~~Ty--~G~~p~~~~~ 88 (191)
T 1bvy_F 43 ADIAMSKGFAPQVATLDSHAGNLPREGAVLIVTASY--NGHPPDNAKQ 88 (191)
T ss_dssp HHHHHTTTCCCEEEEGGGSTTCCCSSSEEEEEECCB--TTBCCTTTHH
T ss_pred HHHHHhCCCceEEeeHHHhhhhhhhCCeEEEEEeec--CCCcCHHHHH
Confidence 455556788888876554322356789999999876 8876554433
No 307
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=25.09 E-value=1.6e+02 Score=29.23 Aligned_cols=103 Identities=15% Similarity=0.180 Sum_probs=52.3
Q ss_pred ccCCCEEEEecCcHHHH--HHHHHHHH--hCC-------ceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-------
Q 008627 452 IRDGDVLLTYGSSSAVE--MILQHAHE--LGK-------QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI------- 513 (559)
Q Consensus 452 I~dGdvILT~g~SstV~--~iL~~A~e--~Gk-------~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D------- 513 (559)
+....+++|-|.+..+. .++..... .|. .-+|+|.+ |.+.+...+ +...|+.+.++..
T Consensus 85 ~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~--p~y~~~~~~--~~~~g~~~~~v~~~~~g~d~ 160 (423)
T 3ez1_A 85 VKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTV--PGYDRHFLL--LQTLGFELLTVDMQSDGPDV 160 (423)
T ss_dssp SCGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEE--SCCHHHHHH--HHHHTCEEEEEEEETTEECH
T ss_pred CChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcC--CCcHHHHHH--HHHcCCEEEeccCCCCCCCH
Confidence 34457788888777765 34443333 221 24566543 667665433 3345777766642
Q ss_pred chHHHHhc---cccEEEEcceeeecCCceecccchHHHHHHH-hhCCCC
Q 008627 514 NAISYIIH---EVTRVFLGASSVLSNGTVCSRVGTACVAMVA-YGFHIP 558 (559)
Q Consensus 514 sAvs~iM~---~VdkVlLGAdaIlaNGsVvNKvGT~~IALaA-k~~~VP 558 (559)
.++-..+. ++..|++=...=-..|.++..---..|+-+| ++|++.
T Consensus 161 ~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~ 209 (423)
T 3ez1_A 161 DAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFT 209 (423)
T ss_dssp HHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCE
T ss_pred HHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCE
Confidence 34444442 3334432222223345555544334555566 777764
No 308
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=25.07 E-value=1e+02 Score=30.74 Aligned_cols=53 Identities=23% Similarity=0.241 Sum_probs=33.1
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY 510 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTy 510 (559)
.++.|++||.+|.+.+=..++..|+..| .+||+++..+. -.+++++| |.+..+
T Consensus 186 ~~~~g~~VlV~G~G~vG~~a~qla~~~G--a~Vi~~~~~~~--~~~~~~~l---Ga~~vi 238 (363)
T 3uog_A 186 HLRAGDRVVVQGTGGVALFGLQIAKATG--AEVIVTSSSRE--KLDRAFAL---GADHGI 238 (363)
T ss_dssp CCCTTCEEEEESSBHHHHHHHHHHHHTT--CEEEEEESCHH--HHHHHHHH---TCSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEecCch--hHHHHHHc---CCCEEE
Confidence 4678999999994443355566666655 48999886542 33444443 554433
No 309
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=25.06 E-value=2.1e+02 Score=27.74 Aligned_cols=99 Identities=16% Similarity=0.158 Sum_probs=55.0
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc----------hHHHHhc-c
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH-E 522 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds----------Avs~iM~-~ 522 (559)
...+++|.|-+..+..++....+.| -+|++. .|.+.+.. ..+...|..+..+... ++-..+. +
T Consensus 81 ~~~v~~~~g~~~a~~~~~~~l~~~g--d~Vl~~--~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 154 (375)
T 3op7_A 81 PEQILQTNGATGANLLVLYSLIEPG--DHVISL--YPTYQQLY--DIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPT 154 (375)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTT--CEEEEE--ESSCTHHH--HHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTT
T ss_pred hhhEEEcCChHHHHHHHHHHhcCCC--CEEEEe--CCCchhHH--HHHHHcCCEEEEEeccccCCCCCCHHHHHHhhccC
Confidence 3467777776777666666554333 345554 35555543 2344568777766522 2333333 4
Q ss_pred ccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 523 VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+..|++- ..-...|.++..---..|+-+|+.||+.+
T Consensus 155 ~~~v~~~-~~~nptG~~~~~~~l~~i~~la~~~~~~l 190 (375)
T 3op7_A 155 TKMICIN-NANNPTGAVMDRTYLEELVEIASEVGAYI 190 (375)
T ss_dssp CCEEEEE-SSCTTTCCCCCHHHHHHHHHHHHTTTCEE
T ss_pred CeEEEEc-CCCCCCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 5555543 22244566665444566777888888753
No 310
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=25.02 E-value=1.1e+02 Score=29.79 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=32.2
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHH
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRL 501 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L 501 (559)
.++.|++||.+|.+.+=..++.-|+..|- +||+++ .+. -.+++++|
T Consensus 139 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga--~Vi~~~-~~~--~~~~~~~l 184 (315)
T 3goh_A 139 PLTKQREVLIVGFGAVNNLLTQMLNNAGY--VVDLVS-ASL--SQALAAKR 184 (315)
T ss_dssp CCCSCCEEEEECCSHHHHHHHHHHHHHTC--EEEEEC-SSC--CHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC--EEEEEE-Chh--hHHHHHHc
Confidence 46789999999995444566666766664 899998 543 34566665
No 311
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=24.96 E-value=3.3e+02 Score=24.98 Aligned_cols=75 Identities=17% Similarity=0.205 Sum_probs=46.5
Q ss_pred CCCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhc------
Q 008627 454 DGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH------ 521 (559)
Q Consensus 454 dGdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~------ 521 (559)
.|.+||..|-|+-+- .+.+...++| .+|++++-++ .....++.+|...|..+.++. | ..+..++.
T Consensus 12 ~~k~vlItGasggiG~~la~~l~~~G--~~V~~~~r~~-~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 88 (260)
T 3awd_A 12 DNRVAIVTGGAQNIGLACVTALAEAG--ARVIIADLDE-AMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQE 88 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCH-HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEeCCH-HHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 466788888877664 4444555555 5788886443 234456777877777777663 3 23444444
Q ss_pred -cccEEEEcce
Q 008627 522 -EVTRVFLGAS 531 (559)
Q Consensus 522 -~VdkVlLGAd 531 (559)
.+|.||--|-
T Consensus 89 ~~id~vi~~Ag 99 (260)
T 3awd_A 89 GRVDILVACAG 99 (260)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 5788887664
No 312
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=24.88 E-value=2.3e+02 Score=26.69 Aligned_cols=77 Identities=12% Similarity=0.066 Sum_probs=48.5
Q ss_pred cCCCEEEEecCcHHHHHH-HHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhc-----
Q 008627 453 RDGDVLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH----- 521 (559)
Q Consensus 453 ~dGdvILT~g~SstV~~i-L~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~----- 521 (559)
..+.+||..|-++-+-.. .+...+. ..+|++++.+.......+..++...|..+.++. | ..+..++.
T Consensus 23 ~~~k~vlITGas~gIG~~~a~~l~~~--G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 100 (269)
T 3gk3_A 23 QAKRVAFVTGGMGGLGAAISRRLHDA--GMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLAD 100 (269)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHTT--TCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hcCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 356778888877666444 4444443 468998887766666666777777777776653 3 23333333
Q ss_pred --cccEEEEcce
Q 008627 522 --EVTRVFLGAS 531 (559)
Q Consensus 522 --~VdkVlLGAd 531 (559)
++|.||-.|-
T Consensus 101 ~g~id~li~nAg 112 (269)
T 3gk3_A 101 FGKVDVLINNAG 112 (269)
T ss_dssp HSCCSEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 6888877764
No 313
>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*
Probab=24.81 E-value=2.5e+02 Score=26.32 Aligned_cols=75 Identities=16% Similarity=0.159 Sum_probs=49.8
Q ss_pred CCEEEEecCcHHH-HHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhc-------
Q 008627 455 GDVLLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH------- 521 (559)
Q Consensus 455 GdvILT~g~SstV-~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~------- 521 (559)
+.+||..|-|+-+ ..+.+...++| .+|+++..|......+++++|.+.|..+.++. | ..+..++.
T Consensus 26 ~k~vlVTGas~gIG~~la~~l~~~G--~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 103 (267)
T 4iiu_A 26 SRSVLVTGASKGIGRAIARQLAADG--FNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQHG 103 (267)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4577777777666 44444555544 67888777776677778888888888877764 2 23333343
Q ss_pred cccEEEEcce
Q 008627 522 EVTRVFLGAS 531 (559)
Q Consensus 522 ~VdkVlLGAd 531 (559)
.+|.||-.|-
T Consensus 104 ~id~li~nAg 113 (267)
T 4iiu_A 104 AWYGVVSNAG 113 (267)
T ss_dssp CCSEEEECCC
T ss_pred CccEEEECCC
Confidence 6788877764
No 314
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=24.74 E-value=3.5e+02 Score=27.40 Aligned_cols=100 Identities=11% Similarity=0.180 Sum_probs=61.3
Q ss_pred HhcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCC---------C---------chHHHHHHHHHhC--CCce
Q 008627 449 VTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP---------K---------HEGKLLLRRLVRK--GLSC 508 (559)
Q Consensus 449 a~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP---------~---------~EG~~LAk~L~~~--GI~v 508 (559)
.++|. +..||..|..++-..++......|.. ++.++|... . .....+++.|.+. .+.+
T Consensus 113 q~~L~-~~~VlvvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v 190 (353)
T 3h5n_A 113 QDKLK-NAKVVILGCGGIGNHVSVILATSGIG-EIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISV 190 (353)
T ss_dssp HHHHH-TCEEEEECCSHHHHHHHHHHHHHTCS-EEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEE
T ss_pred HHHHh-CCeEEEECCCHHHHHHHHHHHhCCCC-eEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeE
Confidence 44554 46799999988777777776666754 455554322 0 1123456677765 4555
Q ss_pred EEEec-----chHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 509 TYTHI-----NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 509 TyI~D-----sAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+.+.. +.+.. +..+|.||.+.|.... --+.+.-+|..+++|+
T Consensus 191 ~~~~~~i~~~~~~~~-~~~~DlVvd~~Dn~~~--------~r~~ln~~c~~~~~p~ 237 (353)
T 3h5n_A 191 SEIALNINDYTDLHK-VPEADIWVVSADHPFN--------LINWVNKYCVRANQPY 237 (353)
T ss_dssp EEEECCCCSGGGGGG-SCCCSEEEECCCCSTT--------HHHHHHHHHHHTTCCE
T ss_pred EEeecccCchhhhhH-hccCCEEEEecCChHH--------HHHHHHHHHHHhCCCE
Confidence 55542 22444 7889999988763320 2345667888899985
No 315
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=24.55 E-value=1.9e+02 Score=28.84 Aligned_cols=38 Identities=16% Similarity=0.347 Sum_probs=27.5
Q ss_pred cc-CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCC
Q 008627 452 IR-DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK 491 (559)
Q Consensus 452 I~-dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~ 491 (559)
+. .|++||.+|.+.+=..++..|+..| .+||+++..+.
T Consensus 184 ~~~~g~~VlV~GaG~vG~~~~q~a~~~G--a~Vi~~~~~~~ 222 (366)
T 1yqd_A 184 LDEPGKHIGIVGLGGLGHVAVKFAKAFG--SKVTVISTSPS 222 (366)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCGG
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHH
Confidence 55 8999999997554456666676666 48998887653
No 316
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=24.49 E-value=2e+02 Score=24.14 Aligned_cols=34 Identities=12% Similarity=0.068 Sum_probs=20.5
Q ss_pred HHHHhCCCc-e--EEEecchHHHHhccccEEEEccee
Q 008627 499 RRLVRKGLS-C--TYTHINAISYIIHEVTRVFLGASS 532 (559)
Q Consensus 499 k~L~~~GI~-v--TyI~DsAvs~iM~~VdkVlLGAda 532 (559)
+.|.+.||+ + ..+....+...+.++|.||++.+-
T Consensus 41 ~~~~~~gi~~~~i~~~~~~~~~~~~~~~DlIi~t~~l 77 (110)
T 3czc_A 41 NALRQLGVSDIESASCSVGEAKGLASNYDIVVASNHL 77 (110)
T ss_dssp HHHHHTTCCCEEEEEECHHHHHHHGGGCSEEEEETTT
T ss_pred HHHHHcCCCeEEEEEeeHHHHhhccCCCcEEEECCch
Confidence 445566766 4 333344454456688888888764
No 317
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=24.46 E-value=4.6e+02 Score=26.86 Aligned_cols=91 Identities=9% Similarity=-0.001 Sum_probs=46.9
Q ss_pred cCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHH-HH-------HHHHhCCCceEEEec--------chHHHHhcc-cc
Q 008627 462 GSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-------RRLVRKGLSCTYTHI--------NAISYIIHE-VT 524 (559)
Q Consensus 462 g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~-LA-------k~L~~~GI~vTyI~D--------sAvs~iM~~-Vd 524 (559)
+-+..+..+|....+.| -+|++.+ .|.+.+.. +. ..|...|+.+.++.. .++-..+.+ ..
T Consensus 85 sGt~Ai~~al~all~~G--D~Vl~~~-~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~tk 161 (409)
T 3jzl_A 85 SGTHAISTVLFGILRPD--DELLYIT-GQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTK 161 (409)
T ss_dssp SHHHHHHHHHHHHCCTT--CEEEECS-SSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCTTEE
T ss_pred cHHHHHHHHHHHhcCCC--CEEEEeC-CCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccCCCe
Confidence 33334444444433333 3566655 34455443 34 456678998888754 233333433 33
Q ss_pred EEEEcceeeecCCceecccchH----HHHHHHhh--CCCCC
Q 008627 525 RVFLGASSVLSNGTVCSRVGTA----CVAMVAYG--FHIPV 559 (559)
Q Consensus 525 kVlLGAdaIlaNGsVvNKvGT~----~IALaAk~--~~VPV 559 (559)
.|++- .+-|++.|..|+. .|+-+|++ ++++|
T Consensus 162 lV~i~----~s~g~p~nptg~v~~l~~I~~la~~~~~~~~l 198 (409)
T 3jzl_A 162 MIGIQ----RSRGYADRPSFTIEKIKEMIVFVKNINPEVIV 198 (409)
T ss_dssp EEEEE----CSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEE
T ss_pred EEEEE----CCCCCCCCCcCccccHHHHHHHHHhhCCCCEE
Confidence 33331 1234466666664 46667888 77753
No 318
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=24.34 E-value=84 Score=29.25 Aligned_cols=31 Identities=10% Similarity=0.173 Sum_probs=19.5
Q ss_pred cccCCCEEEEecCcH---HHHHHHHHHHHhCCce
Q 008627 451 KIRDGDVLLTYGSSS---AVEMILQHAHELGKQF 481 (559)
Q Consensus 451 ~I~dGdvILT~g~Ss---tV~~iL~~A~e~Gk~F 481 (559)
-|+.+|++|.+|+|+ .+..+.+.|+++|..+
T Consensus 74 ~i~~~D~vii~S~Sg~n~~~ie~A~~ake~G~~v 107 (170)
T 3jx9_A 74 TLHAVDRVLIFTPDTERSDLLASLARYDAWHTPY 107 (170)
T ss_dssp CCCTTCEEEEEESCSCCHHHHHHHHHHHHHTCCE
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcE
Confidence 456678888887774 3455566666665543
No 319
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=24.30 E-value=1.7e+02 Score=29.30 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=28.3
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCC
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK 491 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~ 491 (559)
.+..|++||.+|.+.+=..++.-|+..|- -+||+++..+.
T Consensus 190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga-~~Vi~~~~~~~ 229 (378)
T 3uko_A 190 KVEPGSNVAIFGLGTVGLAVAEGAKTAGA-SRIIGIDIDSK 229 (378)
T ss_dssp CCCTTCCEEEECCSHHHHHHHHHHHHHTC-SCEEEECSCTT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHH
Confidence 46789999999985544556666665553 27888887664
No 320
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=24.30 E-value=1.5e+02 Score=28.76 Aligned_cols=96 Identities=14% Similarity=0.160 Sum_probs=49.0
Q ss_pred ccCCCEEEEecCcHHHHHHHHHH-HHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc--------hHHHHhcc
Q 008627 452 IRDGDVLLTYGSSSAVEMILQHA-HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIHE 522 (559)
Q Consensus 452 I~dGdvILT~g~SstV~~iL~~A-~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds--------Avs~iM~~ 522 (559)
+...++|+|-+-+..+..+|..+ .+.| -+|++. .|.+.+... .+...|+++.++... ++-..+.+
T Consensus 51 ~~~~~~~~~~~gt~a~~~~~~~~~~~~g--d~v~~~--~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~ 124 (374)
T 3uwc_A 51 HNAPHAIGVGTGTDALAMSFKMLNIGAG--DEVITC--ANTFIASVG--AIVQAGATPVLVDSENGYVIDPEKIEAAITD 124 (374)
T ss_dssp TTCSEEEEESCHHHHHHHHHHHTTCCTT--CEEEEE--SSSCHHHHH--HHHHTTCEEEEECBCTTSSBCGGGTGGGCCT
T ss_pred hCCCcEEEeCCHHHHHHHHHHHcCCCCC--CEEEEC--CCccHHHHH--HHHHcCCEEEEEecCCCCCcCHHHHHHhCCC
Confidence 33336677766666655555544 3333 355554 356655433 345678888888643 22222222
Q ss_pred ccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 523 VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
=.++|+ . .-..|.+.. -..|+-+|++|+++|
T Consensus 125 ~~~~v~-~--~n~~G~~~~---~~~i~~~~~~~~~~l 155 (374)
T 3uwc_A 125 KTKAIM-P--VHYTGNIAD---MPALAKIAKKHNLHI 155 (374)
T ss_dssp TEEEEC-C--BCGGGCCCC---HHHHHHHHHHTTCEE
T ss_pred CceEEE-E--eCCcCCcCC---HHHHHHHHHHcCCEE
Confidence 223333 1 112233221 245777888888753
No 321
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A
Probab=24.30 E-value=2e+02 Score=28.81 Aligned_cols=98 Identities=5% Similarity=-0.076 Sum_probs=56.1
Q ss_pred CEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEE--Ee-cchHHHHhccccEEEEcce
Q 008627 456 DVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY--TH-INAISYIIHEVTRVFLGAS 531 (559)
Q Consensus 456 dvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTy--I~-DsAvs~iM~~VdkVlLGAd 531 (559)
..|+..|-++-|- .++....++|.-.+|+++|-.+. +| .+..|.....+..+ +. .......++.+|.||+-|-
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~-~~--~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag 85 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA-PG--VTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAG 85 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH-HH--HHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc-Hh--HHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCC
Confidence 4688888543332 22233334454457888886654 44 35566664444332 22 2345567899999999887
Q ss_pred eeecCCc------eecccchHHHHHHHhhCC
Q 008627 532 SVLSNGT------VCSRVGTACVAMVAYGFH 556 (559)
Q Consensus 532 aIlaNGs------VvNKvGT~~IALaAk~~~ 556 (559)
.-...|. -.|--++..++-.+.+++
T Consensus 86 ~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~ 116 (326)
T 1smk_A 86 VPRKPGMTRDDLFKINAGIVKTLCEGIAKCC 116 (326)
T ss_dssp CCCCSSCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5544442 234456777776666554
No 322
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A
Probab=24.24 E-value=1.7e+02 Score=29.53 Aligned_cols=70 Identities=17% Similarity=0.160 Sum_probs=40.2
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEE
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlL 528 (559)
+++||.+|...+-..++..++..|- +|+++|.++.. .+.++++-...+.+.......+...+.++|.||-
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~Ga--~V~v~dr~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~ 236 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLGA--QVQIFDINVER--LSYLETLFGSRVELLYSNSAEIETAVAEADLLIG 236 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--EEEEEeCCHHH--HHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEE
Confidence 4899999997666777777777775 89999877532 2223332221121221122234444556777763
No 323
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=24.22 E-value=83 Score=30.99 Aligned_cols=95 Identities=11% Similarity=0.076 Sum_probs=54.9
Q ss_pred CCEEEEecCc------HHHHHHHHHHHHhCCceEEEEcCCCCCchH----HHHHHHHHhCCCce--------EE----Ee
Q 008627 455 GDVLLTYGSS------SAVEMILQHAHELGKQFRVVIVDSRPKHEG----KLLLRRLVRKGLSC--------TY----TH 512 (559)
Q Consensus 455 GdvILT~g~S------stV~~iL~~A~e~Gk~FrViVvESRP~~EG----~~LAk~L~~~GI~v--------Ty----I~ 512 (559)
.-+|+..|+- ..+.+++....+.+..++++++-..+..++ ..+.+...+.|++- .+ +.
T Consensus 184 ~~~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~ 263 (413)
T 3oy2_A 184 DVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLT 263 (413)
T ss_dssp SEEEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCC
T ss_pred ceEEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCC
Confidence 4467777763 344455555555566777777654443322 23334444567762 22 33
Q ss_pred cchHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 513 INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 513 DsAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+..+..+|..+|.+++-.. . . |--...+=|-.+|+||
T Consensus 264 ~~~~~~~~~~adv~v~pS~--~-E-------~~~~~~lEAma~G~Pv 300 (413)
T 3oy2_A 264 DERVDMMYNACDVIVNCSS--G-E-------GFGLCSAEGAVLGKPL 300 (413)
T ss_dssp HHHHHHHHHHCSEEEECCS--C-C-------SSCHHHHHHHTTTCCE
T ss_pred HHHHHHHHHhCCEEEeCCC--c-C-------CCCcHHHHHHHcCCCE
Confidence 4579999999999988542 1 1 2223455666677775
No 324
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=24.19 E-value=2e+02 Score=28.28 Aligned_cols=12 Identities=17% Similarity=0.274 Sum_probs=9.3
Q ss_pred HHHHHhhCCCCC
Q 008627 548 VAMVAYGFHIPV 559 (559)
Q Consensus 548 IALaAk~~~VPV 559 (559)
..++|+..+||+
T Consensus 132 ~~~aA~~~giP~ 143 (415)
T 3rsc_A 132 GQLLAARWRRPA 143 (415)
T ss_dssp HHHHHHHTTCCE
T ss_pred HHHHHHHhCCCE
Confidence 456788999985
No 325
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=24.16 E-value=2.5e+02 Score=28.23 Aligned_cols=49 Identities=24% Similarity=0.216 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHH-HHhCCCceEEEecch
Q 008627 466 AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRR-LVRKGLSCTYTHINA 515 (559)
Q Consensus 466 tV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~-L~~~GI~vTyI~DsA 515 (559)
++...+..|.+.+..|-||+. -.|..-|-.-|++ |++.||||.+|.|.-
T Consensus 52 ~~~~~~~~~~~~~pDfvI~is-PN~a~PGP~~ARE~l~~~~iP~IvI~D~p 101 (283)
T 1qv9_A 52 AVEMALDIAEDFEPDFIVYGG-PNPAAPGPSKAREMLADSEYPAVIIGDAP 101 (283)
T ss_dssp HHHHHHHHHHHHCCSEEEEEC-SCTTSHHHHHHHHHHHTSSSCEEEEEEGG
T ss_pred HHHHhhhhhhhcCCCEEEEEC-CCCCCCCchHHHHHHHhCCCCEEEEcCCc
Confidence 444444344555677766554 4567788888877 567899999999964
No 326
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Probab=24.13 E-value=3.1e+02 Score=28.87 Aligned_cols=103 Identities=17% Similarity=0.242 Sum_probs=61.6
Q ss_pred ccCCCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCC-c-hHHHHHHHHHhCCCceEEEe-c----chHHHHhccc
Q 008627 452 IRDGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPK-H-EGKLLLRRLVRKGLSCTYTH-I----NAISYIIHEV 523 (559)
Q Consensus 452 I~dGdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~-~-EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~~V 523 (559)
+..+.+||..|-++-+- .+.+...++|.. +|+++.-++. . .-.++..+|...|..++++. | .++..++.++
T Consensus 223 ~~~~~~vLITGgtGgIG~~la~~La~~G~~-~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i 301 (486)
T 2fr1_A 223 WKPTGTVLVTGGTGGVGGQIARWLARRGAP-HLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGI 301 (486)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHHTCS-EEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHcCCC-EEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 45677888888877664 444444555542 4555543332 1 33567888988898888774 3 4566666655
Q ss_pred ------cEEEEcceeeecCCcee-------------cccchHHHHHHHhhCC
Q 008627 524 ------TRVFLGASSVLSNGTVC-------------SRVGTACVAMVAYGFH 556 (559)
Q Consensus 524 ------dkVlLGAdaIlaNGsVv-------------NKvGT~~IALaAk~~~ 556 (559)
|.||-.|- ++.+|.+. |-.|+..+.-+++..+
T Consensus 302 ~~~g~ld~VIh~AG-~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~ 352 (486)
T 2fr1_A 302 GDDVPLSAVFHAAA-TLDDGTVDTLTGERIERASRAKVLGARNLHELTRELD 352 (486)
T ss_dssp CTTSCEEEEEECCC-CCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSC
T ss_pred HhcCCCcEEEECCc-cCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 77776653 33344322 4567766666665543
No 327
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=23.92 E-value=1.2e+02 Score=29.90 Aligned_cols=85 Identities=11% Similarity=0.047 Sum_probs=53.2
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHH-----hccccEEEEc
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI-----IHEVTRVFLG 529 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~i-----M~~VdkVlLG 529 (559)
.+.|+..|+..+-..+.+...+.| . |+++|..|.. ++ |.+.|+.+.+- |..=... +.++|.|++-
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~g--~-v~vid~~~~~-----~~-~~~~~~~~i~g-d~~~~~~L~~a~i~~a~~vi~~ 184 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGSE--V-FVLAEDENVR-----KK-VLRSGANFVHG-DPTRVSDLEKANVRGARAVIVD 184 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGSC--E-EEEESCGGGH-----HH-HHHTTCEEEES-CTTSHHHHHHTCSTTEEEEEEC
T ss_pred cCCEEEECCcHHHHHHHHHHHhCC--c-EEEEeCChhh-----hh-HHhCCcEEEEe-CCCCHHHHHhcChhhccEEEEc
Confidence 457899999887777777766654 4 8888876642 34 55677765443 3222222 4467777765
Q ss_pred ceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
.+ +..-+..+++.|++++..
T Consensus 185 ~~---------~d~~n~~~~~~ar~~~~~ 204 (336)
T 1lnq_A 185 LE---------SDSETIHCILGIRKIDES 204 (336)
T ss_dssp CS---------SHHHHHHHHHHHHTTCTT
T ss_pred CC---------ccHHHHHHHHHHHHHCCC
Confidence 42 234566788888887753
No 328
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=23.89 E-value=75 Score=29.97 Aligned_cols=94 Identities=9% Similarity=-0.035 Sum_probs=51.2
Q ss_pred EEEEecCcHHHHHH-HHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe--c-chHHHHhccccEEEEccee
Q 008627 457 VLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVFLGASS 532 (559)
Q Consensus 457 vILT~g~SstV~~i-L~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~--D-sAvs~iM~~VdkVlLGAda 532 (559)
+||..|-++.+-.. +..+.+. ...+|+++.-+|.. +..|...|+.+.... | ..+..++..+|.||.-|-.
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~-~g~~V~~~~R~~~~-----~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 75 (289)
T 3e48_A 2 NIMLTGATGHLGTHITNQAIAN-HIDHFHIGVRNVEK-----VPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI 75 (289)
T ss_dssp CEEEETTTSHHHHHHHHHHHHT-TCTTEEEEESSGGG-----SCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred EEEEEcCCchHHHHHHHHHhhC-CCCcEEEEECCHHH-----HHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 47888888776444 4443333 13455555433321 122334455443332 1 4566677788888765532
Q ss_pred eecCCceecccchHHHHHHHhhCCCC
Q 008627 533 VLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 533 IlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
. +..-.|-.|+..+.-+|+..++.
T Consensus 76 ~--~~~~~~~~~~~~l~~aa~~~gv~ 99 (289)
T 3e48_A 76 I--HPSFKRIPEVENLVYAAKQSGVA 99 (289)
T ss_dssp C--CSHHHHHHHHHHHHHHHHHTTCC
T ss_pred C--ccchhhHHHHHHHHHHHHHcCCC
Confidence 1 11123557888888888887764
No 329
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=23.86 E-value=1.5e+02 Score=29.20 Aligned_cols=66 Identities=11% Similarity=0.166 Sum_probs=42.6
Q ss_pred EEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceee
Q 008627 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (559)
Q Consensus 457 vILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaI 533 (559)
+||..+.......+++.+++.| ++|++++..+..-... +++ ..++.+ ++-.+..++|.|+.|.+.+
T Consensus 3 ~Ililg~g~~~~~~~~a~~~~G--~~v~~~~~~~~~~~~~----~~~----~~~~~~-~l~~~~~~~d~v~~~~e~~ 68 (365)
T 2z04_A 3 TVGILGGGQLGWMTILEGRKLG--FKFHVLEDKENAPACR----VAD----RCFRTG-QISEFVDSCDIITYEFEHI 68 (365)
T ss_dssp EEEEECCSHHHHHHHHHHGGGT--CEEEEECSSSSCHHHH----HSS----EEECGG-GHHHHHHHCSEEEESSSCC
T ss_pred EEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCCCCchhh----hcc----ceeeHH-HHHHHhhcCCEEEECCCCC
Confidence 6788887777777777776654 7889888877653332 322 223334 4544557799999887543
No 330
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=23.84 E-value=2.8e+02 Score=27.70 Aligned_cols=97 Identities=14% Similarity=0.158 Sum_probs=50.5
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-------chHHHHhc-------
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-------NAISYIIH------- 521 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D-------sAvs~iM~------- 521 (559)
.+++|.|.+..+..++....+.| -+|+|. .|.+.+... .+...|+.+..+.. ..+-..+.
T Consensus 110 ~i~~t~G~~~al~~~~~~l~~~g--d~Vlv~--~p~y~~~~~--~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~ 183 (425)
T 2r2n_A 110 DLCVTSGSQQGLCKVFEMIINPG--DNVLLD--EPAYSGTLQ--SLHPLGCNIINVASDESGIVPDSLRDILSRWKPEDA 183 (425)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEE--SSCCHHHHH--HHGGGTCEEEEECEETTEECHHHHHHHHTTSCSTTS
T ss_pred cEEEeCcHHHHHHHHHHHhCCCC--CEEEEe--CCCcHHHHH--HHHHcCCEEEEeCcCCCCCCHHHHHHHHHhhhcccc
Confidence 56777777777666665554334 345554 467766543 34456887777652 23333443
Q ss_pred ------cccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 522 ------EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 522 ------~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
++..|++=..---..|.++..-=-..|+-+|++|++.
T Consensus 184 ~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~ 226 (425)
T 2r2n_A 184 KNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFL 226 (425)
T ss_dssp SSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCE
T ss_pred ccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCE
Confidence 2333333221122335554432223566678888875
No 331
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=23.71 E-value=3.1e+02 Score=27.84 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=28.1
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCceEEEec--chHH--HHhccccEEEEc
Q 008627 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--NAIS--YIIHEVTRVFLG 529 (559)
Q Consensus 482 rViVvESRP~~EG~~LAk~L~~~GI~vTyI~D--sAvs--~iM~~VdkVlLG 529 (559)
+|+|+ .|-..=|+-++..|...|..||++.- ..+. .+++++|.||..
T Consensus 167 ~vvVI-G~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~l~~~~~~ADIVI~A 217 (300)
T 4a26_A 167 RAVVL-GRSNIVGAPVAALLMKENATVTIVHSGTSTEDMIDYLRTADIVIAA 217 (300)
T ss_dssp EEEEE-CCCTTTHHHHHHHHHHTTCEEEEECTTSCHHHHHHHHHTCSEEEEC
T ss_pred EEEEE-CCCchHHHHHHHHHHHCCCeEEEEeCCCCCchhhhhhccCCEEEEC
Confidence 45555 44344577777777777777666542 2344 566777777643
No 332
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=23.69 E-value=2.2e+02 Score=29.17 Aligned_cols=99 Identities=14% Similarity=0.233 Sum_probs=53.9
Q ss_pred CCCEEEEecCcHHHHHHHHHHHH-----hCC-ceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecch---------HHH
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHE-----LGK-QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA---------ISY 518 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e-----~Gk-~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsA---------vs~ 518 (559)
...+++|.|-+..+..++..+.+ .|. +-+|++. +|.+.+. .+.+...|+.+.++.... +-.
T Consensus 126 ~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~--~~~h~~~--~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~ 201 (497)
T 3mc6_A 126 TGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAP--VTAHAGF--DKAAYYFGMKLRHVELDPTTYQVDLGKVKK 201 (497)
T ss_dssp TCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEE--TTSCHHH--HHHHHHSCCEEEEECBCTTTCSBCTTTTGG
T ss_pred CCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEe--CCccHHH--HHHHHHcCCeEEEEecCcccCcCCHHHHHH
Confidence 34678888877777766666543 231 1255553 4555553 333444689888886332 222
Q ss_pred HhccccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 519 IIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 519 iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.+.+-.++|+...--...|.+.. + ..|+-+|++||++|
T Consensus 202 ~i~~~~~~v~~~~p~nptG~~~~-l--~~i~~la~~~g~~l 239 (497)
T 3mc6_A 202 FINKNTVLLVGSAPNFPHGIADD-I--EGLGKIAQKYKLPL 239 (497)
T ss_dssp GCCSSEEEEEEETTCTTTCCCCS-C--TTTTTHHHHTTCCE
T ss_pred HHhhCCEEEEEECCCCCCCcCCC-H--HHHHHHHHHhCCEE
Confidence 33332344444333334455443 2 24666788888864
No 333
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=23.67 E-value=2.3e+02 Score=28.03 Aligned_cols=92 Identities=11% Similarity=0.059 Sum_probs=47.6
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---------chHHHHhc-----
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---------NAISYIIH----- 521 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D---------sAvs~iM~----- 521 (559)
.+++|.|-+..+..++....+.| -+|++.+ |.+.+... .+...|..+.++.. ..+-..+.
T Consensus 104 ~i~~t~g~~~al~~~~~~l~~~g--d~Vl~~~--p~~~~~~~--~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~ 177 (418)
T 3rq1_A 104 RSIATAGGTGGIHHLIHNYTEPG--DEVLTAD--WYWGAYRV--ICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAK 177 (418)
T ss_dssp EEEEESHHHHHHHHHHHHHSCTT--CEEEEES--SCCTHHHH--HHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHH
T ss_pred cEEECCchHHHHHHHHHHhcCCC--CEEEECC--CCchhHHH--HHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhcc
Confidence 56666666666665555443333 3566554 66655543 23446777777752 12222333
Q ss_pred cccEEEEccee-eecCCceecccchHHHHHHHh
Q 008627 522 EVTRVFLGASS-VLSNGTVCSRVGTACVAMVAY 553 (559)
Q Consensus 522 ~VdkVlLGAda-IlaNGsVvNKvGT~~IALaAk 553 (559)
+..++++=..- --..|.++..---..|+-+|+
T Consensus 178 ~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~ 210 (418)
T 3rq1_A 178 QTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLK 210 (418)
T ss_dssp CSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 23323322212 245577776666566666666
No 334
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=23.64 E-value=75 Score=31.20 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=31.2
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCC
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK 491 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~ 491 (559)
.++.|++||.+|-++....++..|+..+ -.+||++++.+.
T Consensus 160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~-g~~Vi~~~~~~~ 199 (348)
T 4eez_A 160 GVKPGDWQVIFGAGGLGNLAIQYAKNVF-GAKVIAVDINQD 199 (348)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTS-CCEEEEEESCHH
T ss_pred CCCCCCEEEEEcCCCccHHHHHHHHHhC-CCEEEEEECcHH
Confidence 4788999999999988877777776542 358999988764
No 335
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=23.55 E-value=2.8e+02 Score=26.96 Aligned_cols=68 Identities=16% Similarity=0.197 Sum_probs=47.0
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcc
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGA 530 (559)
.|.+|+.+|....-..+.+.++..| ++|++.+-.+.. +..+.+.|+. ++....+..++.++|.|++-+
T Consensus 154 ~g~~v~IiG~G~iG~~~a~~l~~~G--~~V~~~dr~~~~-----~~~~~~~g~~--~~~~~~l~~~l~~aDvVi~~~ 221 (293)
T 3d4o_A 154 HGANVAVLGLGRVGMSVARKFAALG--AKVKVGARESDL-----LARIAEMGME--PFHISKAAQELRDVDVCINTI 221 (293)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSHHH-----HHHHHHTTSE--EEEGGGHHHHTTTCSEEEECC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEECCHHH-----HHHHHHCCCe--ecChhhHHHHhcCCCEEEECC
Confidence 5789999999877777777777666 489988865421 2233455654 343345667788999999865
No 336
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=23.55 E-value=2.2e+02 Score=27.00 Aligned_cols=74 Identities=15% Similarity=0.252 Sum_probs=42.4
Q ss_pred EEEecCcHHHHHHHHHHHHhCCceEEE-EcCCCCCchHHHHHHHHHhCCCceEEEec----------chHHHHhc--ccc
Q 008627 458 LLTYGSSSAVEMILQHAHELGKQFRVV-IVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH--EVT 524 (559)
Q Consensus 458 ILT~g~SstV~~iL~~A~e~Gk~FrVi-VvESRP~~EG~~LAk~L~~~GI~vTyI~D----------sAvs~iM~--~Vd 524 (559)
||.-|..+....+|...++.+...+|. |+-.+|...|.+.|+ +.||++.++.. ..+-..++ ++|
T Consensus 6 vl~SG~g~~~~~~l~~l~~~~~~~~i~~Vvs~~~~~~~~~~A~---~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~D 82 (216)
T 2ywr_A 6 VLVSGRGSNLQAIIDAIESGKVNASIELVISDNPKAYAIERCK---KHNVECKVIQRKEFPSKKEFEERMALELKKKGVE 82 (216)
T ss_dssp EEECSCCHHHHHHHHHHHTTSSCEEEEEEEESCTTCHHHHHHH---HHTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCC
T ss_pred EEEeCCcHHHHHHHHHHHhCCCCCeEEEEEeCCCChHHHHHHH---HcCCCEEEeCcccccchhhhhHHHHHHHHhcCCC
Confidence 343477777777776655433333543 332345566665554 46999987653 33444454 689
Q ss_pred EEEEcce-eee
Q 008627 525 RVFLGAS-SVL 534 (559)
Q Consensus 525 kVlLGAd-aIl 534 (559)
.+++-+- .|+
T Consensus 83 liv~a~y~~il 93 (216)
T 2ywr_A 83 LVVLAGFMRIL 93 (216)
T ss_dssp EEEESSCCSCC
T ss_pred EEEEeCchhhC
Confidence 8887543 444
No 337
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=23.53 E-value=2.3e+02 Score=28.11 Aligned_cols=55 Identities=27% Similarity=0.426 Sum_probs=32.7
Q ss_pred cccCCCEEEEecCcHHH-HHHHHHHHHhCCceEEE-EcCCCCCch-HHHHHHHHHhCCCceEE
Q 008627 451 KIRDGDVLLTYGSSSAV-EMILQHAHELGKQFRVV-IVDSRPKHE-GKLLLRRLVRKGLSCTY 510 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV-~~iL~~A~e~Gk~FrVi-VvESRP~~E-G~~LAk~L~~~GI~vTy 510 (559)
.+..|++||.+|-++.| ..++.-|+..|- +|| ++++.+..+ -.++++ +.|.+..+
T Consensus 164 ~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga--~vi~~~~~~~~~~~~~~~~~---~lGa~~vi 221 (357)
T 1zsy_A 164 QLQPGDSVIQNASNSGVGQAVIQIAAALGL--RTINVVRDRPDIQKLSDRLK---SLGAEHVI 221 (357)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHTC--EEEEEECCCSCHHHHHHHHH---HTTCSEEE
T ss_pred ccCCCCEEEEeCCcCHHHHHHHHHHHHcCC--EEEEEecCccchHHHHHHHH---hcCCcEEE
Confidence 47789999999986655 455566665553 455 445555432 233444 45655443
No 338
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=23.52 E-value=2.1e+02 Score=30.62 Aligned_cols=89 Identities=12% Similarity=0.026 Sum_probs=53.1
Q ss_pred CCCEEEEecCcHHHHHHHHH-HHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEccee
Q 008627 454 DGDVLLTYGSSSAVEMILQH-AHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~-A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAda 532 (559)
.+..|..+|-.++-...|.. +++ +.++|.+.|.++... +...|.+.||++.+-.+. ..+..++|.|+++.-
T Consensus 18 ~~~~i~~iGiGg~Gms~lA~~l~~--~G~~V~~sD~~~~~~---~~~~L~~~gi~~~~G~~~--~~~~~~~d~vV~Spg- 89 (524)
T 3hn7_A 18 QGMHIHILGICGTFMGSLALLARA--LGHTVTGSDANIYPP---MSTQLEQAGVTIEEGYLI--AHLQPAPDLVVVGNA- 89 (524)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESCCCTT---HHHHHHHTTCEEEESCCG--GGGCSCCSEEEECTT-
T ss_pred cCCEEEEEEecHhhHHHHHHHHHh--CCCEEEEECCCCCcH---HHHHHHHCCCEEECCCCH--HHcCCCCCEEEECCC-
Confidence 34667777766555443333 333 447899999986543 467788899987654332 233456888877642
Q ss_pred eecCCceecccchHHHHHHHhhCCCCC
Q 008627 533 VLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 533 IlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
|-. +...-..|++.||||
T Consensus 90 i~~---------~~p~l~~a~~~gi~v 107 (524)
T 3hn7_A 90 MKR---------GMDVIEYMLDTGLRY 107 (524)
T ss_dssp CCT---------TSHHHHHHHHHTCCE
T ss_pred cCC---------CCHHHHHHHHCCCcE
Confidence 211 123335566777775
No 339
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=23.52 E-value=1.1e+02 Score=28.86 Aligned_cols=17 Identities=0% Similarity=-0.078 Sum_probs=13.6
Q ss_pred cccchHHHHHHHhhCCC
Q 008627 541 SRVGTACVAMVAYGFHI 557 (559)
Q Consensus 541 NKvGT~~IALaAk~~~V 557 (559)
|-.||..+.-+|+.+++
T Consensus 95 n~~~~~~ll~a~~~~~v 111 (321)
T 3vps_A 95 NVDSGRHLLALCTSVGV 111 (321)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 67788888888887775
No 340
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=23.49 E-value=3.5e+02 Score=27.45 Aligned_cols=88 Identities=11% Similarity=0.090 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhCCceEEEEcCCCCCc-hHHHHHHHHHhCCCceEEEecchHHHHh-------ccccEEEEcceeeecCC
Q 008627 466 AVEMILQHAHELGKQFRVVIVDSRPKH-EGKLLLRRLVRKGLSCTYTHINAISYII-------HEVTRVFLGASSVLSNG 537 (559)
Q Consensus 466 tV~~iL~~A~e~Gk~FrViVvESRP~~-EG~~LAk~L~~~GI~vTyI~DsAvs~iM-------~~VdkVlLGAdaIlaNG 537 (559)
..+.+...+.+.|.++.++++|+-+.. +-.+.++.|.+.|++..+++-......+ +++.+|++....-..|-
T Consensus 46 ~~~G~~~~~~~~G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~g~~~~~~~~~vA~~~Pdv~fv~id~~~~~~Nv 125 (356)
T 3s99_A 46 HDQARKELVEALGDKVETTFLENVAEGADAERSIKRIARAGNKLIFTTSFGYMDPTVKVAKKFPDVKFEHATGYKTADNM 125 (356)
T ss_dssp HHHHHHHHHHHHTTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEECSGGGHHHHHHHHTTCTTSEEEEESCCCCBTTE
T ss_pred HHHHHHHHHHHhCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEEeccccCCcE
Confidence 344444445555666889999987764 3345688999999997777644433333 24567776543223332
Q ss_pred cee---cccchHHHHHHHh
Q 008627 538 TVC---SRVGTACVAMVAY 553 (559)
Q Consensus 538 sVv---NKvGT~~IALaAk 553 (559)
..+ +.-|.|++.++|.
T Consensus 126 ~sv~~~~~eg~ylaG~~A~ 144 (356)
T 3s99_A 126 SAYNARFYEGRYVQGVIAA 144 (356)
T ss_dssp EEEEECHHHHHHHHHHHHH
T ss_pred EEEEechhHHHHHHHHHHH
Confidence 221 2457777776554
No 341
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=23.43 E-value=2.1e+02 Score=27.53 Aligned_cols=96 Identities=8% Similarity=0.090 Sum_probs=49.0
Q ss_pred CEEEEecC-cHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc--------hHHHHhc-cccE
Q 008627 456 DVLLTYGS-SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH-EVTR 525 (559)
Q Consensus 456 dvILT~g~-SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds--------Avs~iM~-~Vdk 525 (559)
++|++.+. +..+..++..+.+.| -+|++.+ |.+-|..+...+...|+.+.++... .+-..+. ++..
T Consensus 72 ~~i~~~~ggt~al~~~~~~~~~~g--d~vi~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~ 147 (376)
T 3f0h_A 72 KAVFMTCSSTGSMEAVVMNCFTKK--DKVLVID--GGSFGHRFVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTG 147 (376)
T ss_dssp EEEEESSCHHHHHHHHHHHHCCTT--CCEEEEE--SSHHHHHHHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTTSCCCE
T ss_pred eEEEEcCChhHHHHHHHHhccCCC--CeEEEEe--CChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhccCceE
Confidence 44442333 444445554443333 3555553 2233444555566678888877532 2222222 3444
Q ss_pred EEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 526 VlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
|++ ...=-..|.++. -..|+-+|++||++|
T Consensus 148 v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~l 177 (376)
T 3f0h_A 148 LLV-NVDETSTAVLYD---TMMIGEFCKKNNMFF 177 (376)
T ss_dssp EEE-ESEETTTTEECC---HHHHHHHHHHTTCEE
T ss_pred EEE-ecccCCcceecC---HHHHHHHHHHcCCEE
Confidence 443 222234565555 556778889998864
No 342
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=23.37 E-value=1.6e+02 Score=28.34 Aligned_cols=53 Identities=11% Similarity=0.212 Sum_probs=28.0
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI 513 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D 513 (559)
..+++|-|.+..+..++....+.|. +|++.+ |.+.+.. ..+...|+.+.++..
T Consensus 85 ~~v~~~~g~t~a~~~~~~~~~~~gd--~vl~~~--~~~~~~~--~~~~~~g~~~~~v~~ 137 (363)
T 3ffh_A 85 EELIFTAGVDELIELLTRVLLDTTT--NTVMAT--PTFVQYR--QNALIEGAEVREIPL 137 (363)
T ss_dssp GGEEEESSHHHHHHHHHHHHCSTTC--EEEEEE--SSCHHHH--HHHHHHTCEEEEEEC
T ss_pred hhEEEeCCHHHHHHHHHHHHccCCC--EEEEcC--CChHHHH--HHHHHcCCEEEEecC
Confidence 4566666666665555554433332 555543 5555532 233345777777753
No 343
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}
Probab=23.36 E-value=1.5e+02 Score=29.30 Aligned_cols=51 Identities=22% Similarity=0.383 Sum_probs=33.2
Q ss_pred cccCCCEEEEecCcHHH-HHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCce
Q 008627 451 KIRDGDVLLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSC 508 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV-~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~v 508 (559)
.+..|++||.+|.++.+ ..++..|+..| .+|++++..+.. .+++++ .|.+.
T Consensus 166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--a~V~~~~~~~~~--~~~~~~---~g~~~ 217 (347)
T 2hcy_A 166 NLMAGHWVAISGAAGGLGSLAVQYAKAMG--YRVLGIDGGEGK--EELFRS---IGGEV 217 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECSTTH--HHHHHH---TTCCE
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCC--CcEEEEcCCHHH--HHHHHH---cCCce
Confidence 36789999999997655 45555666656 489988865532 234443 46553
No 344
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=23.28 E-value=5.1e+02 Score=26.83 Aligned_cols=92 Identities=9% Similarity=0.023 Sum_probs=48.7
Q ss_pred EecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH-HHH--------HHHHhCCCceEEEec-------chHHHHhc--
Q 008627 460 TYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL--------RRLVRKGLSCTYTHI-------NAISYIIH-- 521 (559)
Q Consensus 460 T~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~-~LA--------k~L~~~GI~vTyI~D-------sAvs~iM~-- 521 (559)
|.+-+..+..+|....+.| -+|++.+ .|.+.|. .+. ..|...|+.+..+.. .++-..+.
T Consensus 98 ~~sGt~A~~~al~all~pG--D~Vl~~~-~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~ 174 (427)
T 3hvy_A 98 FVNGTHAIGAALFGNLRPN--DTMMSIC-GMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTVKEELKKD 174 (427)
T ss_dssp CCSHHHHHHHHHHHTCCTT--CEEEECS-SSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHhcCCC--CEEEEeC-CCCchhHHHHhccccchhhhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCC
Confidence 4444444444444333333 3566655 3555554 344 445667998887753 34555554
Q ss_pred -cccEEEEcceeeecCCceecccch----HHHHHHHhh--CCCC
Q 008627 522 -EVTRVFLGASSVLSNGTVCSRVGT----ACVAMVAYG--FHIP 558 (559)
Q Consensus 522 -~VdkVlLGAdaIlaNGsVvNKvGT----~~IALaAk~--~~VP 558 (559)
+...|++.... |+..|..|+ ..|+-+|++ +++.
T Consensus 175 ~~tklV~i~~s~----gyp~nptg~v~dl~~i~~ia~~~~~g~~ 214 (427)
T 3hvy_A 175 DSIKLIHIQRST----GYGWRKSLRIAEIAEIIKSIREVNENVI 214 (427)
T ss_dssp TTEEEEEEESSC----CSSSSCCCCHHHHHHHHHHHHHHCSSSE
T ss_pred CCCEEEEEECCC----CCCCCccccHHHHHHHHHHHHHhCCCCE
Confidence 45556554422 334555554 446667777 6765
No 345
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=23.23 E-value=1.1e+02 Score=26.27 Aligned_cols=68 Identities=13% Similarity=0.184 Sum_probs=40.4
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcc
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGA 530 (559)
|.+|+.+|....-..++..+.+.| ++|+|++-.+. ....+++++ |+++ .....+..++.++|.||.-.
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g--~~v~v~~r~~~-~~~~~a~~~---~~~~--~~~~~~~~~~~~~Divi~at 88 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQ--YKVTVAGRNID-HVRAFAEKY---EYEY--VLINDIDSLIKNNDVIITAT 88 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTT--CEEEEEESCHH-HHHHHHHHH---TCEE--EECSCHHHHHHTCSEEEECS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCHH-HHHHHHHHh---CCce--EeecCHHHHhcCCCEEEEeC
Confidence 889999998555455555444434 56777765432 223344444 4433 33445556678899988743
No 346
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=23.23 E-value=2.8e+02 Score=26.29 Aligned_cols=99 Identities=18% Similarity=0.100 Sum_probs=54.8
Q ss_pred ccCCCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHh-CCCceEEE--ec----chHHHHhccc
Q 008627 452 IRDGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYT--HI----NAISYIIHEV 523 (559)
Q Consensus 452 I~dGdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~-~GI~vTyI--~D----sAvs~iM~~V 523 (559)
+..|.+||..|-++-+- .++..+.++| .+|++++-.+ .....+...+.. .+-.++++ .| .++..++.++
T Consensus 8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g--~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~ 84 (342)
T 1y1p_A 8 LPEGSLVLVTGANGFVASHVVEQLLEHG--YKVRGTARSA-SKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGA 84 (342)
T ss_dssp SCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSH-HHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTC
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCc-ccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCC
Confidence 34567899999987774 4444455555 5777775432 222233333332 23345555 23 3455556677
Q ss_pred cEEEEcceeeecCCc-----eecccchHHHHHHHh
Q 008627 524 TRVFLGASSVLSNGT-----VCSRVGTACVAMVAY 553 (559)
Q Consensus 524 dkVlLGAdaIlaNGs-----VvNKvGT~~IALaAk 553 (559)
|.||--|-....+.. -+|-.||..+.-+|.
T Consensus 85 d~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~ 119 (342)
T 1y1p_A 85 AGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAA 119 (342)
T ss_dssp SEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 777765532211111 136678888888776
No 347
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=23.22 E-value=1.4e+02 Score=30.20 Aligned_cols=71 Identities=15% Similarity=0.080 Sum_probs=41.0
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCc-------h-HHHHHHHHHhCCCceEEEecchH---HHHhccc
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKH-------E-GKLLLRRLVRKGLSCTYTHINAI---SYIIHEV 523 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~-------E-G~~LAk~L~~~GI~vTyI~DsAv---s~iM~~V 523 (559)
+..|+++|..-+-.++-..+.+.|.+ |.++|..|.. + +..+.+.|.+.||++.+ ...+ +..+ ++
T Consensus 146 ~~~vvVIGgG~~g~E~A~~l~~~g~~--Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~--~~~v~~ig~~~-~~ 220 (385)
T 3klj_A 146 KGKAFIIGGGILGIELAQAIIDSGTP--ASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYT--NSNFEEMGDLI-RS 220 (385)
T ss_dssp HSCEEEECCSHHHHHHHHHHHHHTCC--EEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEEC--SCCGGGCHHHH-HH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCe--EEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEe--CCEEEEcCeEE-ec
Confidence 45678888776655666666666764 5555544432 1 22345667778876543 3222 2222 48
Q ss_pred cEEEEcc
Q 008627 524 TRVFLGA 530 (559)
Q Consensus 524 dkVlLGA 530 (559)
|.||++.
T Consensus 221 D~vv~a~ 227 (385)
T 3klj_A 221 SCVITAV 227 (385)
T ss_dssp SEEEECC
T ss_pred CeEEECc
Confidence 8888765
No 348
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=23.22 E-value=1.4e+02 Score=30.13 Aligned_cols=94 Identities=16% Similarity=0.156 Sum_probs=49.0
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH-HHHHH-HHhCCCceEEEecc---hHHHHhc-cccEEEEc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLRR-LVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~-~LAk~-L~~~GI~vTyI~Ds---Avs~iM~-~VdkVlLG 529 (559)
+.|++-+-+..+..++. ..+.| -+|++.+ |.+.|. .+... +...|+.+.++... .+-..+. ++..|++
T Consensus 84 ~~i~~~sG~~ai~~~~~-l~~~g--d~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~~t~~v~~- 157 (403)
T 3cog_A 84 YCLAFASGLAATVTITH-LLKAG--DQIICMD--DVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPETKLVWI- 157 (403)
T ss_dssp EEEEESCHHHHHHHHHT-TSCTT--CEEEEES--SCCHHHHHHHHHTGGGGTCEEEEECTTSHHHHHHHCCTTEEEEEE-
T ss_pred cEEEECCHHHHHHHHHH-HhCCC--CEEEEeC--CCcchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCcCCeEEEE-
Confidence 34444433444444444 33333 3566654 667664 32333 35679999998743 3333343 3334443
Q ss_pred ceeeecCCceecccchHHHHHHHhhCC-CC
Q 008627 530 ASSVLSNGTVCSRVGTACVAMVAYGFH-IP 558 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~~IALaAk~~~-VP 558 (559)
..---..|.++. -..|+-+|+++| ++
T Consensus 158 ~~p~nptG~~~~---l~~i~~la~~~g~~~ 184 (403)
T 3cog_A 158 ETPTNPTQKVID---IEGCAHIVHKHGDII 184 (403)
T ss_dssp ESSCTTTCCCCC---HHHHHHHHTSSSCCE
T ss_pred ECCCCCCCeeeC---HHHHHHHHHHcCCCE
Confidence 222234455554 456777888888 65
No 349
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=23.17 E-value=1e+02 Score=26.45 Aligned_cols=31 Identities=10% Similarity=-0.032 Sum_probs=21.8
Q ss_pred hCCCceEEE--ecchHHHHhccccEEEEcceee
Q 008627 503 RKGLSCTYT--HINAISYIIHEVTRVFLGASSV 533 (559)
Q Consensus 503 ~~GI~vTyI--~DsAvs~iM~~VdkVlLGAdaI 533 (559)
+.||++... ..+.+...+.+.|.||||-..-
T Consensus 32 ~~gi~v~i~a~~~~~~~~~~~~~DvvLLgPQV~ 64 (108)
T 3nbm_A 32 LTEVRVIANSGAYGAHYDIMGVYDLIILAPQVR 64 (108)
T ss_dssp HHTCSEEEEEEETTSCTTTGGGCSEEEECGGGG
T ss_pred HCCCceEEEEcchHHHHhhccCCCEEEEChHHH
Confidence 457777773 4555666677899999997644
No 350
>4etn_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.10A {Bacillus subtilis} PDB: 4eti_A 1zgg_A
Probab=23.15 E-value=77 Score=29.70 Aligned_cols=73 Identities=11% Similarity=0.098 Sum_probs=48.0
Q ss_pred EEEEe-----cCcHHHHHHHHHHHH-hCCceEEEEcCCCCCchHH----HHHHHHHhCCCceEEEecchHH-HHhccccE
Q 008627 457 VLLTY-----GSSSAVEMILQHAHE-LGKQFRVVIVDSRPKHEGK----LLLRRLVRKGLSCTYTHINAIS-YIIHEVTR 525 (559)
Q Consensus 457 vILT~-----g~SstV~~iL~~A~e-~Gk~FrViVvESRP~~EG~----~LAk~L~~~GI~vTyI~DsAvs-~iM~~Vdk 525 (559)
.||.. |+|...+.+|++... .|..|.|.-.-+.++. |. ...+.|.+.||++. ..--.+. ..+.+.|.
T Consensus 36 ~VLFVC~gNiCRSpmAEai~r~~~~~~g~~~~v~SAGt~~~~-G~~~dp~a~~vl~e~Gidis-hrar~lt~~d~~~~Dl 113 (184)
T 4etn_A 36 DIIFVCTGNTSRSPMAEALFKSIAEREGLNVNVRSAGVFASP-NGKATPHAVEALFEKHIALN-HVSSPLTEELMESADL 113 (184)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHHTCCEEEEEEETTCCT-TCBCCHHHHHHHHHTTCCCC-CBCCBCCHHHHHHCSE
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHhcCCcEEEEeeecCCcC-CCCCCHHHHHHHHHcCCCch-hccCcCCHHHcCCCCE
Confidence 56665 568899999998654 4556777766665543 42 45778888999987 3333333 34567888
Q ss_pred EEEcce
Q 008627 526 VFLGAS 531 (559)
Q Consensus 526 VlLGAd 531 (559)
||.=.+
T Consensus 114 IltMd~ 119 (184)
T 4etn_A 114 VLAMTH 119 (184)
T ss_dssp EEESSH
T ss_pred EEEcCc
Confidence 876443
No 351
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=22.99 E-value=2.7e+02 Score=27.28 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=34.7
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEE
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT 511 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI 511 (559)
.+..|++||.+|.+.+=..++.-|+..| ..+||+++..+. -.++++ +.|.+.++-
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g-~~~Vi~~~~~~~--~~~~~~---~lGa~~~i~ 222 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVS-AARVIAVDLDDD--RLALAR---EVGADAAVK 222 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESCHH--HHHHHH---HTTCSEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHH--HHHHHH---HcCCCEEEc
Confidence 4788999999998554455566665553 358999987643 233444 346655443
No 352
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=22.99 E-value=2.7e+02 Score=26.12 Aligned_cols=78 Identities=15% Similarity=0.200 Sum_probs=51.0
Q ss_pred cCCCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhc-----
Q 008627 453 RDGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH----- 521 (559)
Q Consensus 453 ~dGdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~----- 521 (559)
.++.+||..|-++-+- .+.+...++| .+|+++..|.......+..+|.+.|-.+.++. | ..+..++.
T Consensus 24 ~~~k~vlITGas~gIG~a~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 101 (272)
T 4e3z_A 24 SDTPVVLVTGGSRGIGAAVCRLAARQG--WRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQ 101 (272)
T ss_dssp CCSCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 3567888888776664 4444445544 67888877766666677888888887777763 3 23444444
Q ss_pred --cccEEEEccee
Q 008627 522 --EVTRVFLGASS 532 (559)
Q Consensus 522 --~VdkVlLGAda 532 (559)
.+|.||--|-.
T Consensus 102 ~g~id~li~nAg~ 114 (272)
T 4e3z_A 102 FGRLDGLVNNAGI 114 (272)
T ss_dssp HSCCCEEEECCCC
T ss_pred CCCCCEEEECCCC
Confidence 57888877643
No 353
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=22.91 E-value=3.2e+02 Score=26.52 Aligned_cols=69 Identities=17% Similarity=0.223 Sum_probs=46.9
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcce
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGAS 531 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAd 531 (559)
.|.+|+.+|....-..+.+.++..| ++|++.+-++.. +..+.+.|+.+ +....+..+++++|.|++-+-
T Consensus 156 ~g~~v~IiG~G~iG~~~a~~l~~~G--~~V~~~d~~~~~-----~~~~~~~g~~~--~~~~~l~~~l~~aDvVi~~~p 224 (300)
T 2rir_A 156 HGSQVAVLGLGRTGMTIARTFAALG--ANVKVGARSSAH-----LARITEMGLVP--FHTDELKEHVKDIDICINTIP 224 (300)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSHHH-----HHHHHHTTCEE--EEGGGHHHHSTTCSEEEECCS
T ss_pred CCCEEEEEcccHHHHHHHHHHHHCC--CEEEEEECCHHH-----HHHHHHCCCeE--EchhhHHHHhhCCCEEEECCC
Confidence 5789999999877777777777655 589988865421 23344456643 323456677889999988653
No 354
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=22.85 E-value=1.9e+02 Score=30.51 Aligned_cols=97 Identities=19% Similarity=0.169 Sum_probs=60.1
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCC--CchHHHHH----HHHHhCCCceEEEecchHHHHhcc--ccEEE
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP--KHEGKLLL----RRLVRKGLSCTYTHINAISYIIHE--VTRVF 527 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP--~~EG~~LA----k~L~~~GI~vTyI~DsAvs~iM~~--VdkVl 527 (559)
|.++.+-....+..++.++.+.|.+.-|++.+.-| ..||..+. +.+.+.|+ .++-.|.++.+-.. ++.-|
T Consensus 66 Dlavi~vp~~~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~--~viGPnc~Gv~~~~~~~~~~~ 143 (457)
T 2csu_A 66 DLAIIVVPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGM--RIIGPNCVGIMNTHVDLNATF 143 (457)
T ss_dssp SEEEECSCHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTC--EEECSSCCEEEEGGGTEEEES
T ss_pred CEEEEecCHHHHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCC--EEEcCCcceEEccCCCceeee
Confidence 77777888899999999999988776666666655 34666553 33445566 34445554444332 23333
Q ss_pred EcceeeecCC--ceecccchHHHHHH--HhhCCC
Q 008627 528 LGASSVLSNG--TVCSRVGTACVAMV--AYGFHI 557 (559)
Q Consensus 528 LGAdaIlaNG--sVvNKvGT~~IALa--Ak~~~V 557 (559)
.... .. | +++++.||...+++ +...++
T Consensus 144 ~~~~-~~--G~v~~vsqSG~~~~~~~~~~~~~g~ 174 (457)
T 2csu_A 144 ITVA-KK--GNVAFISQSGALGAGIVYKTIKEDI 174 (457)
T ss_dssp SCCC-EE--CSEEEEESCHHHHHHHHHHHHHTTC
T ss_pred cCCC-CC--CCEEEEeCCHHHHHHHHHHHHhcCC
Confidence 2222 22 5 48999999988773 445544
No 355
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G
Probab=22.79 E-value=2.6e+02 Score=25.35 Aligned_cols=73 Identities=14% Similarity=0.172 Sum_probs=41.6
Q ss_pred CEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhc-------c
Q 008627 456 DVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH-------E 522 (559)
Q Consensus 456 dvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~-------~ 522 (559)
.+||..|-|+-+- .+.+...++| .+|+++..|.......+.++|...|-.+.++. | ..+..++. .
T Consensus 2 k~vlVTGasggiG~~la~~l~~~G--~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (244)
T 1edo_A 2 PVVVVTGASRGIGKAIALSLGKAG--CKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGT 79 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 4677777776553 4444444444 57777655554444556666766565665553 3 23444444 4
Q ss_pred ccEEEEcc
Q 008627 523 VTRVFLGA 530 (559)
Q Consensus 523 VdkVlLGA 530 (559)
+|.||--|
T Consensus 80 id~li~~A 87 (244)
T 1edo_A 80 IDVVVNNA 87 (244)
T ss_dssp CSEEEECC
T ss_pred CCEEEECC
Confidence 77777655
No 356
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=22.77 E-value=1.9e+02 Score=28.12 Aligned_cols=71 Identities=15% Similarity=0.121 Sum_probs=42.8
Q ss_pred hcccCCCEEEEec-Cc-HHHHHHHHHHHHhCCceEEEEcCCCCCch--HHHHHHHHHhCCCceEEEe-cchHHHHhc
Q 008627 450 TKIRDGDVLLTYG-SS-SAVEMILQHAHELGKQFRVVIVDSRPKHE--GKLLLRRLVRKGLSCTYTH-INAISYIIH 521 (559)
Q Consensus 450 ~~I~dGdvILT~g-~S-stV~~iL~~A~e~Gk~FrViVvESRP~~E--G~~LAk~L~~~GI~vTyI~-DsAvs~iM~ 521 (559)
+++..+..++.+. .. .-+...|....++|+.. |++.-.-|..- |..+++.|.+.||++.+|+ .+++.++..
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G~~V-a~L~~GDP~iyg~~~~l~~~l~~~gi~veviPGiSs~~aaaA 121 (264)
T 3ndc_A 46 AHCPPGAKIVNTAPMSLDAIIDTIAEAHAAGQDV-ARLHSGDLSIWSAMGEQLRRLRALNIPYDVTPGVPSFAAAAA 121 (264)
T ss_dssp GGSCTTCEEEECTTSCHHHHHHHHHHHHHHTCCE-EEEESBCTTSSCSHHHHHHHHHHTTCCEEEECCCCHHHHHHH
T ss_pred hhcCCCCEEEecCCCCHHHHHHHHHHHHHCCCeE-EEEeCCCCccccHHHHHHHHHHhCCCCEEEeCCHHHHHHHHH
Confidence 3444444444432 11 12233344444557764 44447888764 5678899999999999998 566666544
No 357
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5
Probab=22.73 E-value=2e+02 Score=27.66 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=32.1
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHh
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR 503 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~ 503 (559)
.|.+|+..|.++.-..+...+.+.| .+|+|++-. ......+++++..
T Consensus 118 ~~k~vlViGaGg~g~a~a~~L~~~G--~~V~v~~R~-~~~~~~la~~~~~ 164 (271)
T 1nyt_A 118 PGLRILLIGAGGASRGVLLPLLSLD--CAVTITNRT-VSRAEELAKLFAH 164 (271)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSS-HHHHHHHHHHTGG
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEECC-HHHHHHHHHHhhc
Confidence 4678999999877777777777777 578888633 2334456666544
No 358
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=22.68 E-value=4.8e+02 Score=24.48 Aligned_cols=89 Identities=11% Similarity=0.054 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhCCceEEEEcCCCCCchHHH----HHHHHHhCCCceEEEec--c-hHHHHhc-----cccEEEEccee
Q 008627 465 SAVEMILQHAHELGKQFRVVIVDSRPKHEGKL----LLRRLVRKGLSCTYTHI--N-AISYIIH-----EVTRVFLGASS 532 (559)
Q Consensus 465 stV~~iL~~A~e~Gk~FrViVvESRP~~EG~~----LAk~L~~~GI~vTyI~D--s-Avs~iM~-----~VdkVlLGAda 532 (559)
..+...+.-|...+..+.++-+.. | .+..+ +++.+...|+++++... . ....++. .+|.|++|.+.
T Consensus 22 ~al~~A~~la~~~~a~l~ll~v~~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~ 99 (290)
T 3mt0_A 22 LALKRAQLIAGVTQSHLHLLVCEK-R-RDHSAALNDLAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFP 99 (290)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECS-S-SCCHHHHHHHHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HHHHHHHHHHHhcCCeEEEEEeeC-c-HHHHHHHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEeccc
Confidence 455566666666777777664433 3 33332 34566678999887653 2 2333333 59999999975
Q ss_pred eecCCceec-ccchHHHHHHHhhCCCCC
Q 008627 533 VLSNGTVCS-RVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 533 IlaNGsVvN-KvGT~~IALaAk~~~VPV 559 (559)
- |.+-. -.|+..-.++ ++.++||
T Consensus 100 ~---~~~~~~~~gs~~~~vl-~~~~~PV 123 (290)
T 3mt0_A 100 D---NPLKKAILTPDDWKLL-RFAPCPV 123 (290)
T ss_dssp S---CTTSTTSCCHHHHHHH-HHCSSCE
T ss_pred C---CchhhcccCHHHHHHH-hcCCCCE
Confidence 3 22222 2466554444 4455664
No 359
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=22.60 E-value=1.7e+02 Score=25.81 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=31.8
Q ss_pred hhccCCCCCchHHHHHHHhh-hcCCcccChHHHHHHHHHHHHHH
Q 008627 319 QSKFFQLDTLHPAVYKVGLQ-YLSGDICGGNARCIAMLQAFQEA 361 (559)
Q Consensus 319 ~~~~~~~~~VHPaVl~Lglq-~~~~~I~GSnAraiA~L~aLk~v 361 (559)
|.+||+...|.---++-|++ +-.+.+.=++.+..++|+|.+++
T Consensus 15 y~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRv 58 (109)
T 1v54_E 15 WVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRL 58 (109)
T ss_dssp HHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHT
T ss_pred HHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHh
Confidence 56677777766666666666 66777888888888888887763
No 360
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=22.58 E-value=76 Score=32.41 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=44.3
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec----chHHHHhc--cccEEEE
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----NAISYIIH--EVTRVFL 528 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D----sAvs~iM~--~VdkVlL 528 (559)
..+||..|.......+++.+.+ ..++|+++++.|...+..++ . -.|+.+ .++-.+.+ ++|.|+.
T Consensus 19 ~~~ili~g~g~~g~~~~~a~~~--~G~~v~~v~~~~~~~~~~~a----d----~~~~~~~~d~~~l~~~~~~~~~d~V~~ 88 (433)
T 2dwc_A 19 AQKILLLGSGELGKEIAIEAQR--LGVEVVAVDRYANAPAMQVA----H----RSYVGNMMDKDFLWSVVEREKPDAIIP 88 (433)
T ss_dssp CCEEEEESCSHHHHHHHHHHHH--TTCEEEEEESSTTCHHHHHS----S----EEEESCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEECCCCChhhhhc----c----eEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 3589999988777777777776 44788999998877554332 1 112221 23334443 6899998
Q ss_pred cceee
Q 008627 529 GASSV 533 (559)
Q Consensus 529 GAdaI 533 (559)
|.+.+
T Consensus 89 ~~e~~ 93 (433)
T 2dwc_A 89 EIEAI 93 (433)
T ss_dssp CSSCS
T ss_pred CcccC
Confidence 87643
No 361
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=22.51 E-value=1.6e+02 Score=28.25 Aligned_cols=52 Identities=8% Similarity=-0.018 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCceEEEEcCCCCCch--HHHHHHHHHhCCCceEEEe-cchHHHHhc
Q 008627 469 MILQHAHELGKQFRVVIVDSRPKHE--GKLLLRRLVRKGLSCTYTH-INAISYIIH 521 (559)
Q Consensus 469 ~iL~~A~e~Gk~FrViVvESRP~~E--G~~LAk~L~~~GI~vTyI~-DsAvs~iM~ 521 (559)
..|....++|++.-+ ++-.-|..- |..+++.|.+.||++.+|+ .+++.++..
T Consensus 68 ~~i~~~~~~g~~V~~-l~~GDP~i~~~~~~l~~~l~~~gi~veviPGiSS~~aa~a 122 (253)
T 4e16_A 68 DVMREGIENNKSVVR-LQTGDFSIYGSIREQVEDLNKLNIDYDCTPGVSSFLGAAS 122 (253)
T ss_dssp HHHHHHHHTTCCEEE-EESBCTTTTCCHHHHHHHHHHHTCCEEEECCCCHHHHHHH
T ss_pred HHHHHHHHCCCcEEE-EeCCCCccccCHHHHHHHHHHCCCCEEEECCHHHHHHHHH
Confidence 344444456776444 447778754 5678889999999999998 566666554
No 362
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=22.49 E-value=2.3e+02 Score=28.12 Aligned_cols=98 Identities=11% Similarity=0.102 Sum_probs=52.9
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc---------hHHHHh-cccc
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYII-HEVT 524 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds---------Avs~iM-~~Vd 524 (559)
..+++|-|.+..+..++....+.| -+|++. .|.+.|...+ +...|+.+..+... ++-..+ .++.
T Consensus 110 ~~v~~t~G~~~al~~~~~~l~~~g--d~Vl~~--~p~y~~~~~~--~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~ 183 (404)
T 2o1b_A 110 DEVCILYGTKNGLVAVPTCVINPG--DYVLLP--DPGYTDYLAG--VLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTK 183 (404)
T ss_dssp TSEEEESSHHHHHHHHHHHHCCTT--CEEEEE--ESCCSSHHHH--HHHTTCEEEEEECCTTTCCCCGGGSCHHHHHHEE
T ss_pred ccEEEcCCcHHHHHHHHHHhcCCC--CEEEEc--CCCchhHHHH--HHHCCCEEEEeccCcccCcCCHHHHHHhhccCce
Confidence 567888777777776666553333 355554 3556555432 33468887777532 111222 2455
Q ss_pred EEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 525 kVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
.|++- ..-...|.++..-=-..|+-+|+++++.+
T Consensus 184 ~v~l~-~p~nptG~~~~~~~l~~l~~~~~~~~~~l 217 (404)
T 2o1b_A 184 LIYLT-YPNNPTGSTATKEVFDEAIAKFKGTDTKI 217 (404)
T ss_dssp EEEEC-SSCTTTCCCCCHHHHHHHHHHHTTSSCEE
T ss_pred EEEEc-CCCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence 56553 22223355543322235677888888753
No 363
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=22.35 E-value=4.5e+02 Score=28.26 Aligned_cols=94 Identities=12% Similarity=0.073 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhccc--CCCEEEEecCcH----HHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEE
Q 008627 438 ILADRVIVKHAVTKIR--DGDVLLTYGSSS----AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT 511 (559)
Q Consensus 438 ~~A~e~Ia~~Aa~~I~--dGdvILT~g~Ss----tV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI 511 (559)
+.|...+++...+++. .+..|+.+|-++ --.-+-+++++.|.+.+||++...-..+.+...+.|.+.|+++.
T Consensus 33 E~Ag~a~a~~i~~~~~~~~~~~v~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~~-- 110 (502)
T 3rss_A 33 ERAGISVVLAMEEELGNLSDYRFLVLCGGGNNGGDGFVVARNLLGVVKDVLVVFLGKKKTPDCEYNYGLYKKFGGKVV-- 110 (502)
T ss_dssp HHHHHHHHHHHHHHHSCCTTCEEEEEECSSHHHHHHHHHHHHHTTTSSEEEEEECCSSCCHHHHHHHHHHHHTTCCEE--
T ss_pred HHHHHHHHHHHHHhcCccCCCEEEEEECCCCCHHHHHHHHHHHHHCCCeEEEEEECCCCCHHHHHHHHHHHhCCCcee--
Confidence 3455666666666654 456788887652 11122344455677777777654322233444677888898875
Q ss_pred ecchHHHHhccccEEEEcceeeecCC
Q 008627 512 HINAISYIIHEVTRVFLGASSVLSNG 537 (559)
Q Consensus 512 ~DsAvs~iM~~VdkVlLGAdaIlaNG 537 (559)
+..+...+..+|.|| |+|+--|
T Consensus 111 -~~~~~~~~~~~dliV---DalfG~G 132 (502)
T 3rss_A 111 -EQFEPSILNEFDVVV---DAIFGTG 132 (502)
T ss_dssp -SCCCGGGGGGCSEEE---EESCSTT
T ss_pred -cccccccCCCCCEEE---EeCccCC
Confidence 111223355678765 6677665
No 364
>3rof_A Low molecular weight protein-tyrosine-phosphatase; phosphatase, hydrolase; 1.03A {Staphylococcus aureus}
Probab=22.34 E-value=57 Score=29.80 Aligned_cols=53 Identities=11% Similarity=0.054 Sum_probs=37.0
Q ss_pred EEEEe-----cCcHHHHHHHHHHHH-hCC-ceEEEEcCCCCCchHH----HHHHHHHhCCCceE
Q 008627 457 VLLTY-----GSSSAVEMILQHAHE-LGK-QFRVVIVDSRPKHEGK----LLLRRLVRKGLSCT 509 (559)
Q Consensus 457 vILT~-----g~SstV~~iL~~A~e-~Gk-~FrViVvESRP~~EG~----~LAk~L~~~GI~vT 509 (559)
.||.. |+|...+.+|++..+ .|. .|+|.-.-+.|+..|. ...+.|.+.||++.
T Consensus 8 ~vLFVC~gN~cRSpmAE~i~~~~~~~~gl~~~~v~SAGt~~~~~G~~~~~~a~~~l~~~Gid~~ 71 (158)
T 3rof_A 8 DVAFVCLGNICRSPMAEAIMRQRLKDRNIHDIKVHSRGTGSWNLGEPPHEGTQKILNKHNIPFD 71 (158)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHTTCCSEEEEEEETTCCSTTCCCCHHHHHHHHHTTCCCT
T ss_pred EEEEEeCCchhHHHHHHHHHHHHHHHcCCCCeEEEecccCCcccCCCCCHHHHHHHHHcCCCcC
Confidence 45654 678899999998654 342 2788877778865553 45777888898754
No 365
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Probab=22.30 E-value=1.9e+02 Score=28.70 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=32.8
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHH
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRL 501 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L 501 (559)
.++.|++||.+|-+.+=..++.-|+..|-+ +||+++..+ +-.+++++|
T Consensus 176 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~-~Vi~~~~~~--~~~~~a~~l 223 (363)
T 3m6i_A 176 GVRLGDPVLICGAGPIGLITMLCAKAAGAC-PLVITDIDE--GRLKFAKEI 223 (363)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHHTTCC-SEEEEESCH--HHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCC-EEEEECCCH--HHHHHHHHh
Confidence 478899999999855445666667665532 388887654 344667777
No 366
>2amh_A Septum formation protein MAF homologue, putative; domain alpha-beta motif, structural genomics, PSI, protein structure initiative; 2.00A {Trypanosoma brucei} SCOP: c.51.4.2
Probab=22.24 E-value=1.8e+02 Score=27.84 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=48.4
Q ss_pred EEEecCcHHHH-HHHHHHH-HhCCceEEEEc---CC-CCCchHHHHHHHHHhCCCceEEEecchHHHHhcc------ccE
Q 008627 458 LLTYGSSSAVE-MILQHAH-ELGKQFRVVIV---DS-RPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE------VTR 525 (559)
Q Consensus 458 ILT~g~SstV~-~iL~~A~-e~Gk~FrViVv---ES-RP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~------Vdk 525 (559)
||.++.+|--. ++|..+. +.|..|.|+.. |+ .+...-.+++.+|+..+- .++..-+.. -+.
T Consensus 11 l~ILAS~SPrR~eLL~~~~~~~gi~f~v~~~~iDE~~~~~~~p~~~v~~lA~~KA-------~av~~~~~~~~~~~~~~~ 83 (207)
T 2amh_A 11 TMIIGTSSAFRANVLREHFGDRFRNFVLLPPDIDEKAYRAADPFELTESIARAKM-------KAVLEKARQHSPPISGPA 83 (207)
T ss_dssp EEEECCCCHHHHHHHHHHHTTTCSEEEECCCCCCGGGCCCSSHHHHHHHHHHHHH-------HHHHHHHHTC------CE
T ss_pred EEEEccCCHHHHHHHHhhhhcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHH-------HHHHHHhcccccccCCCC
Confidence 43566555544 4454432 11788988854 33 222233456777765321 122222211 146
Q ss_pred EEEcceeeec-CCceecccchHHHH
Q 008627 526 VFLGASSVLS-NGTVCSRVGTACVA 549 (559)
Q Consensus 526 VlLGAdaIla-NGsVvNKvGT~~IA 549 (559)
+|||||.|+. ||.++.|-.+..-|
T Consensus 84 ~VIgaDTvV~~~g~IlgKP~~~e~A 108 (207)
T 2amh_A 84 IALTFDQVVVKGDEVREKPLSTEQC 108 (207)
T ss_dssp EEEEEEEEEEETTEEECSCSSHHHH
T ss_pred EEEEECeEEEECCEEcCCCCCHHHH
Confidence 8999999885 88899998887665
No 367
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=22.17 E-value=2.6e+02 Score=29.84 Aligned_cols=69 Identities=13% Similarity=0.165 Sum_probs=47.3
Q ss_pred hcccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEc
Q 008627 450 TKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (559)
Q Consensus 450 ~~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLG 529 (559)
...-.|.+|..+|+...=..+...+...| .+|+++|..|.. +......|+.+. .+..+++++|.|++-
T Consensus 206 g~~L~GktVgIiG~G~IG~~vA~~Lka~G--a~Viv~D~~p~~-----a~~A~~~G~~~~-----sL~eal~~ADVVilt 273 (436)
T 3h9u_A 206 DVMIAGKTACVCGYGDVGKGCAAALRGFG--ARVVVTEVDPIN-----ALQAAMEGYQVL-----LVEDVVEEAHIFVTT 273 (436)
T ss_dssp CCCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHH-----HHHHHHTTCEEC-----CHHHHTTTCSEEEEC
T ss_pred CCcccCCEEEEEeeCHHHHHHHHHHHHCC--CEEEEECCChhh-----hHHHHHhCCeec-----CHHHHHhhCCEEEEC
Confidence 34446899999999987777777666555 589999986532 122234566442 567788899999874
Q ss_pred c
Q 008627 530 A 530 (559)
Q Consensus 530 A 530 (559)
.
T Consensus 274 ~ 274 (436)
T 3h9u_A 274 T 274 (436)
T ss_dssp S
T ss_pred C
Confidence 3
No 368
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}
Probab=22.16 E-value=3e+02 Score=24.95 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=42.2
Q ss_pred CEEEEecCcHHHHH-HHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEE-E-ec----chHHHHhc-------
Q 008627 456 DVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY-T-HI----NAISYIIH------- 521 (559)
Q Consensus 456 dvILT~g~SstV~~-iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTy-I-~D----sAvs~iM~------- 521 (559)
.+||..|-|+-+-. +.+...++| .+|+++..|.......+..+|...|..+.+ + +| ..+..++.
T Consensus 2 k~vlITGasggiG~~~a~~l~~~G--~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (245)
T 2ph3_A 2 RKALITGASRGIGRAIALRLAEDG--FALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLG 79 (245)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTT--CEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcC
Confidence 46777777766643 444444444 678887555544555667777777766554 3 33 23333332
Q ss_pred cccEEEEcc
Q 008627 522 EVTRVFLGA 530 (559)
Q Consensus 522 ~VdkVlLGA 530 (559)
.+|.||--|
T Consensus 80 ~~d~li~~A 88 (245)
T 2ph3_A 80 GLDTLVNNA 88 (245)
T ss_dssp CCCEEEECC
T ss_pred CCCEEEECC
Confidence 577777665
No 369
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding protein, lipid binding protein; HET: PLM; 2.04A {Streptococcus mutans}
Probab=22.15 E-value=1.7e+02 Score=29.79 Aligned_cols=56 Identities=20% Similarity=0.159 Sum_probs=34.5
Q ss_pred ccCCCEEEEec----CcHHHHHHHHHHH---HhCCceEEEEcCCCCCchHHHH----HHHHHhCCCc
Q 008627 452 IRDGDVLLTYG----SSSAVEMILQHAH---ELGKQFRVVIVDSRPKHEGKLL----LRRLVRKGLS 507 (559)
Q Consensus 452 I~dGdvILT~g----~SstV~~iL~~A~---e~Gk~FrViVvESRP~~EG~~L----Ak~L~~~GI~ 507 (559)
+.+|+-|+.++ -|+|.+.+...+. ++-..++|+|+||+-..-|..+ |.+|.+.|.+
T Consensus 112 ~~~g~~Ii~I~iSS~LSGTy~sA~~Aa~~~~e~~~~~~I~ViDS~~~s~g~g~lv~~Aa~l~~~G~s 178 (320)
T 3pl5_A 112 AENGQEVLYIAFSSVLSGTYQSAVMARDIVLEEYPQASIEIVDTLAATGGEGYLAMLAAQAREEGKS 178 (320)
T ss_dssp HHTTCCEEEEECCTTTCTHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCeEEEEecCchHhHHHHHHHHHHHHHHhhCCCCeEEEEcCCchHHHHHHHHHHHHHHHhcCCC
Confidence 33455444443 3678776665543 2234568999999987665543 5667777754
No 370
>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding protein; HET: PLM; 2.50A {Bacillus subtilis}
Probab=22.13 E-value=1.1e+02 Score=31.17 Aligned_cols=55 Identities=13% Similarity=0.090 Sum_probs=35.8
Q ss_pred cccCCCEEEEecC----cHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHH----HHHHHhCCC
Q 008627 451 KIRDGDVLLTYGS----SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL----LRRLVRKGL 506 (559)
Q Consensus 451 ~I~dGdvILT~g~----SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~L----Ak~L~~~GI 506 (559)
++.+++-|+.++- |+|.+.+...+ +.=..++|+|+||+-..-|..+ |.+|.+.|.
T Consensus 110 l~~~~~~Ii~I~iSS~LSGTy~sA~~Aa-~~~~~~~I~ViDS~~~s~g~g~lv~~Aa~l~~~G~ 172 (315)
T 3fys_A 110 LGKSYDAVISIHLSSGISGTFSSAAAAD-SMVDNIDVYPFDSEISCLAQGFYALKAAELIKNGA 172 (315)
T ss_dssp HTTTCSEEEEEESCTTTCSHHHHHHHGG-GGCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTC
T ss_pred HHhcCCcEEEEeCCCcHhHHHHHHHHHH-HhCCCCCEEEECCchhHHHHHHHHHHHHHHHHcCC
Confidence 4555666666544 56766655543 2223469999999987766543 677888887
No 371
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=22.01 E-value=3.8e+02 Score=26.23 Aligned_cols=96 Identities=16% Similarity=0.066 Sum_probs=49.8
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHH-HHHHHH-HhCCCceEEEecc---hHHHHhc-cccEEEEc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLRRL-VRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~-~LAk~L-~~~GI~vTyI~Ds---Avs~iM~-~VdkVlLG 529 (559)
+.|++-+.+..+..++..+.+ ..-+|++.+ |.+.+. ...+.+ ...|+++.++... .+-..+. ++..|++-
T Consensus 69 ~~i~~~sGt~a~~~~~~~~~~--~g~~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~~ 144 (386)
T 1cs1_A 69 GAVLTNTGMSAIHLVTTVFLK--PGDLLVAPH--DCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVE 144 (386)
T ss_dssp EEEEESSHHHHHHHHHHHHCC--TTCEEEEET--TCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHTCCSEEEEE
T ss_pred cEEEeCCHHHHHHHHHHHHhC--CCCEEEEec--CCcHhHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhccCCcEEEEe
Confidence 444443324444444444433 234566654 666663 223333 4568888888642 3333343 45566553
Q ss_pred ceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
..--..|.+.. -..|+-+|++|++.+
T Consensus 145 -~~~nptG~~~~---l~~i~~l~~~~~~~l 170 (386)
T 1cs1_A 145 -SPSNPLLRVVD---IAKICHLAREVGAVS 170 (386)
T ss_dssp -CSCTTTCCCCC---HHHHHHHHHHTTCEE
T ss_pred -CCCCCCCcccC---HHHHHHHHHHcCCEE
Confidence 22222355543 356777888888753
No 372
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=21.68 E-value=2.3e+02 Score=22.99 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=25.2
Q ss_pred CceEEEEcCC-CCCchHHHHHHHHHhC--CCceEEEe
Q 008627 479 KQFRVVIVDS-RPKHEGKLLLRRLVRK--GLSCTYTH 512 (559)
Q Consensus 479 k~FrViVvES-RP~~EG~~LAk~L~~~--GI~vTyI~ 512 (559)
..+.++++|- -|...|.++++.|.+. .+++.+++
T Consensus 43 ~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~s 79 (139)
T 2jk1_A 43 EWVQVIICDQRMPGRTGVDFLTEVRERWPETVRIIIT 79 (139)
T ss_dssp SCEEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEEE
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEe
Confidence 3588998884 4788999999999875 45555554
No 373
>2dt8_A DEGV family protein; fatty acid binding, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: PLM; 1.48A {Thermus thermophilus}
Probab=21.65 E-value=74 Score=31.50 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=33.8
Q ss_pred hcccCCCEEEEecC----cHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHH----HHHHHhCCC
Q 008627 450 TKIRDGDVLLTYGS----SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL----LRRLVRKGL 506 (559)
Q Consensus 450 ~~I~dGdvILT~g~----SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~L----Ak~L~~~GI 506 (559)
+++.+|+-|+.++- |+|.+.+...+ +. -..+|+|+||+-..-|..+ |.+|.+.|.
T Consensus 75 ~l~~~~~~ii~i~lSs~LSGTy~sA~~aa-~~-~~~~I~ViDS~~~s~g~g~~v~~a~~l~~~G~ 137 (280)
T 2dt8_A 75 EALEEADHVLSLHISGKLSGTVQSAELAA-QE-FPGRVTVVDTQAASLGVGMMVLRAKELLEEGQ 137 (280)
T ss_dssp HHTTSCSEEEEEESCTTTCTHHHHHHHHH-TT-STTSEEEEECSCCTHHHHHHHHHHHHHHHHTC
T ss_pred HHHhCCCeEEEEECCCcHhHHHHHHHHHH-Hh-CCCCEEEECCchhHHHHHHHHHHHHHHHHcCC
Confidence 34556676666654 56777666544 32 1128999999987655543 556666664
No 374
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=21.62 E-value=2.7e+02 Score=30.62 Aligned_cols=116 Identities=24% Similarity=0.337 Sum_probs=81.7
Q ss_pred chHHHHHHHHHHHHHHHHhcCchhhh-HHHHHHHHHHHHHh-cc-------------------CCCCHHHHHHHHHHHHH
Q 008627 372 TLSRDLTAKISSYVSFLIDCRPLSVS-MGNAIRFLKSQIAK-IP-------------------ISLSESEAKATLHSDIE 430 (559)
Q Consensus 372 ~lsrdL~~~L~~~i~~L~~aRPtsvs-mgNAIrrlk~~I~~-l~-------------------~~~s~~eaK~~L~e~Id 430 (559)
+...+|.+.|..+-+...+-+|.++. +||++.-+-..+++ +. .+.+.+|..+...+.=+
T Consensus 209 ~~~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~~DlvtDQTSaHdp~~GY~P~g~t~ee~~~l~~~dp~ 288 (551)
T 1x87_A 209 TMTDSLDAALEMAKQAKEEKKALSIGLVGNAAEVLPRLVETGFVPDVLTDQTSAHDPLNGYIPAGLTLDEAAELRARDPK 288 (551)
T ss_dssp EEESCHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHHHHHTTCCCSEECCCSCTTCTTTTCCCTTCCHHHHHHHHHHCHH
T ss_pred eEcCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHCCCCCCCCCCCccccCcccccCCCCCCHHHHHHHHHhCHH
Confidence 34567888888888888888999985 78998877666654 11 13468888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH---hcccCCCEEEEecCc-----------------HHHHHHHHHHHHhCC-ceEEEEcCCC
Q 008627 431 RFINEKIILADRVIVKHAV---TKIRDGDVLLTYGSS-----------------SAVEMILQHAHELGK-QFRVVIVDSR 489 (559)
Q Consensus 431 ~fI~ErI~~A~e~Ia~~Aa---~~I~dGdvILT~g~S-----------------stV~~iL~~A~e~Gk-~FrViVvESR 489 (559)
.|.+ .+.+.+.+|.. ++-..|..+.-|||+ +-|..+|.-.+..|+ .||=+++-..
T Consensus 289 ~~~~----~~~~Sm~rhv~am~~~~~~G~~~fDYGN~~r~~a~~aG~~~aF~~P~fV~~~irPlF~~G~GPFRWvalSGd 364 (551)
T 1x87_A 289 QYIA----RAKQSIAAHVRAMLAMQKQGAVTFDYGNNIRQVAKDEGVDDAFSFPGFVPAYIRPLFCEGKGPFRWVALSGD 364 (551)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHHTTCEECBCSSCHHHHHHHTTCTTGGGSCBHHHHTTHHHHHTTCEEEEEEETTCC
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHhCChhhcCCCCccHHHHhhhHhhcCCCCceeEEcCCC
Confidence 8864 35666776643 455678888889987 345566666666665 5888877665
Q ss_pred CC
Q 008627 490 PK 491 (559)
Q Consensus 490 P~ 491 (559)
|.
T Consensus 365 pe 366 (551)
T 1x87_A 365 PE 366 (551)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 375
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=21.56 E-value=3.1e+02 Score=25.91 Aligned_cols=76 Identities=11% Similarity=0.121 Sum_probs=49.4
Q ss_pred CCCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhc------
Q 008627 454 DGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH------ 521 (559)
Q Consensus 454 dGdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~------ 521 (559)
.|.+||..|-|+-+- .+.+...++| .+|++++.+.......++.+|.+.|..+.++. | ..+..++.
T Consensus 27 ~~k~vlVTGas~gIG~aia~~la~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~ 104 (269)
T 4dmm_A 27 TDRIALVTGASRGIGRAIALELAAAG--AKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERW 104 (269)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 467788887776664 4444444544 67888877665556677888888887777663 3 23444444
Q ss_pred -cccEEEEcce
Q 008627 522 -EVTRVFLGAS 531 (559)
Q Consensus 522 -~VdkVlLGAd 531 (559)
.+|.||--|-
T Consensus 105 g~id~lv~nAg 115 (269)
T 4dmm_A 105 GRLDVLVNNAG 115 (269)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 5788877663
No 376
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=21.53 E-value=1.3e+02 Score=24.03 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=31.9
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCC-CCchHHHHHHHHHhCC--CceEEEecc
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR-PKHEGKLLLRRLVRKG--LSCTYTHIN 514 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESR-P~~EG~~LAk~L~~~G--I~vTyI~Ds 514 (559)
|..|.+..... .++.... ...+.++++|-. |...|.++++.|.+.+ +++.+++..
T Consensus 31 g~~v~~~~~~~---~a~~~l~--~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~~ 88 (130)
T 3eod_A 31 GATTVLAADGV---DALELLG--GFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISAT 88 (130)
T ss_dssp TCEEEEESCHH---HHHHHHT--TCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEECC
T ss_pred CceEEEeCCHH---HHHHHHh--cCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEcC
Confidence 44455544333 3343332 355889988855 7788999999998864 666666643
No 377
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=21.53 E-value=4.1e+02 Score=25.58 Aligned_cols=66 Identities=8% Similarity=0.065 Sum_probs=36.1
Q ss_pred hCCceEEEEc-CCCCCchHHHHHHHHHhCCCceEEE---ecchHHHHhccccEEEEcceeeecCCceecccchHHHHHHH
Q 008627 477 LGKQFRVVIV-DSRPKHEGKLLLRRLVRKGLSCTYT---HINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVA 552 (559)
Q Consensus 477 ~Gk~FrViVv-ESRP~~EG~~LAk~L~~~GI~vTyI---~DsAvs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaA 552 (559)
+...++++++ ...+ +-++.++++.+..-+|.++ ...-+..+|..+|.+++.+ |+. .+=|
T Consensus 227 ~~~~~~lv~~~g~~~--~~~~~l~~~~~~~~~v~~~g~~g~~~~~~~~~~ad~~v~~S-------------~g~--~lEA 289 (376)
T 1v4v_A 227 AFPHLTFVYPVHLNP--VVREAVFPVLKGVRNFVLLDPLEYGSMAALMRASLLLVTDS-------------GGL--QEEG 289 (376)
T ss_dssp HCTTSEEEEECCSCH--HHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTEEEEEESC-------------HHH--HHHH
T ss_pred hCCCeEEEEECCCCH--HHHHHHHHHhccCCCEEEECCCCHHHHHHHHHhCcEEEECC-------------cCH--HHHH
Confidence 3445777765 3222 1233344444321256666 3346788899999987643 332 3456
Q ss_pred hhCCCCC
Q 008627 553 YGFHIPV 559 (559)
Q Consensus 553 k~~~VPV 559 (559)
-.+|+||
T Consensus 290 ~a~G~Pv 296 (376)
T 1v4v_A 290 AALGVPV 296 (376)
T ss_dssp HHTTCCE
T ss_pred HHcCCCE
Confidence 6677774
No 378
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=21.41 E-value=95 Score=26.24 Aligned_cols=35 Identities=11% Similarity=0.243 Sum_probs=22.3
Q ss_pred HHHHHhCCCceEEEecchH-HHHhccccEEEEccee
Q 008627 498 LRRLVRKGLSCTYTHINAI-SYIIHEVTRVFLGASS 532 (559)
Q Consensus 498 Ak~L~~~GI~vTyI~DsAv-s~iM~~VdkVlLGAda 532 (559)
++.|.+.|++|+++..... ..-+.+.|.|++|+-.
T Consensus 20 a~~l~~~g~~v~~~~~~~~~~~~l~~~d~iiig~pt 55 (138)
T 5nul_A 20 AKGIIESGKDVNTINVSDVNIDELLNEDILILGCSA 55 (138)
T ss_dssp HHHHHHTTCCCEEEEGGGCCHHHHTTCSEEEEEECC
T ss_pred HHHHHHCCCeEEEEEhhhCCHHHHhhCCEEEEEcCc
Confidence 4455566777777764432 2235678888888754
No 379
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=21.25 E-value=90 Score=30.72 Aligned_cols=53 Identities=26% Similarity=0.292 Sum_probs=34.8
Q ss_pred cccCCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q 008627 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY 510 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTy 510 (559)
.++.|++||.+|.+.+=..++..|+..|- +||+++..+. -.++++ +.|.+..+
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga--~Vi~~~~~~~--~~~~~~---~lGa~~~i 215 (340)
T 3s2e_A 163 DTRPGQWVVISGIGGLGHVAVQYARAMGL--RVAAVDIDDA--KLNLAR---RLGAEVAV 215 (340)
T ss_dssp TCCTTSEEEEECCSTTHHHHHHHHHHTTC--EEEEEESCHH--HHHHHH---HTTCSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC--eEEEEeCCHH--HHHHHH---HcCCCEEE
Confidence 57789999999976544566666666554 8999987543 333444 35655444
No 380
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=21.21 E-value=2.4e+02 Score=28.10 Aligned_cols=96 Identities=16% Similarity=0.091 Sum_probs=51.2
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHH-HHHHH-HhCCCceEEEecc---hHHHHhc-cccEEEEc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LLRRL-VRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~-LAk~L-~~~GI~vTyI~Ds---Avs~iM~-~VdkVlLG 529 (559)
+.|++-+-+..+..+|..+.+.| -+|++.+ |.+.+.. .++.+ ...|+.+.++... .+-..+. ++..|++-
T Consensus 82 ~~i~~~sG~~a~~~~l~~~~~~g--d~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~~ 157 (398)
T 1gc0_A 82 AGLALASGMGAITSTLWTLLRPG--DEVLLGN--TLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFE 157 (398)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEES--SCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhcCC--CEEEEeC--CCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCeEEEEE
Confidence 55555555555555555443333 3566553 4555543 34444 5679999988643 3333333 34445442
Q ss_pred ceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
..--..|.+.. -..|+-+|++||+.|
T Consensus 158 -~~~nptG~~~~---l~~i~~l~~~~~~~l 183 (398)
T 1gc0_A 158 -SPANPNMHMAD---IAGVAKIARKHGATV 183 (398)
T ss_dssp -SSCTTTCCCCC---HHHHHHHHGGGTCEE
T ss_pred -CCCCCCccccc---HHHHHHHHHHcCCEE
Confidence 12222355543 456777888888763
No 381
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=21.21 E-value=1.3e+02 Score=24.99 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=30.5
Q ss_pred CceEEEEcCC-CCCchHHHHHHHHHhC--CCceEEEecchHHHHhccccEEEEcceeee
Q 008627 479 KQFRVVIVDS-RPKHEGKLLLRRLVRK--GLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (559)
Q Consensus 479 k~FrViVvES-RP~~EG~~LAk~L~~~--GI~vTyI~DsAvs~iM~~VdkVlLGAdaIl 534 (559)
..+.++++|- -|...|.++++.|.+. ++++.+++...- .-......-.|++.++
T Consensus 48 ~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~~~~--~~~~~~~~~~ga~~~l 104 (141)
T 3cu5_A 48 HPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSGYSD--KEYLKAAIKFRAIRYV 104 (141)
T ss_dssp SCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECCSTT--TCCC------CCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCCCc--HHHHHHHHhCCccEEE
Confidence 4578888875 4778999999999874 455555554321 1112334445665544
No 382
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=21.14 E-value=5.3e+02 Score=24.41 Aligned_cols=51 Identities=12% Similarity=0.186 Sum_probs=28.3
Q ss_pred CCceEEEec-----chHHHHhccccEEEEcceeeecCCceec-ccchHHHHHHHhhCCCCC
Q 008627 505 GLSCTYTHI-----NAISYIIHEVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 505 GI~vTyI~D-----sAvs~iM~~VdkVlLGAdaIlaNGsVvN-KvGT~~IALaAk~~~VPV 559 (559)
|+++++... ..+..+..++|.|++|.+.- |.+-. -.|+..-.++ ++.++||
T Consensus 100 ~~~~~~~~~~g~~~~~I~~~a~~~DliV~G~~g~---~~~~~~~~Gs~~~~vl-~~~~~PV 156 (309)
T 3cis_A 100 PPTVHSEIVPAAAVPTLVDMSKDAVLMVVGCLGS---GRWPGRLLGSVSSGLL-RHAHCPV 156 (309)
T ss_dssp CSCEEEEEESSCHHHHHHHHGGGEEEEEEESSCT---TCCTTCCSCHHHHHHH-HHCSSCE
T ss_pred CceEEEEEecCCHHHHHHHHhcCCCEEEECCCCC---ccccccccCcHHHHHH-HhCCCCE
Confidence 888877542 22333345899999999752 22211 2465444443 3446664
No 383
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}
Probab=21.13 E-value=1.3e+02 Score=29.78 Aligned_cols=46 Identities=28% Similarity=0.419 Sum_probs=29.3
Q ss_pred cccCCCEEEEecCcHHH-HHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHH
Q 008627 451 KIRDGDVLLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRL 501 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV-~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L 501 (559)
.+..|++||.+|-++.| ..++..|+..| .+||++ .++. -.+++++|
T Consensus 147 ~~~~g~~VlV~Ga~g~iG~~~~q~a~~~G--a~Vi~~-~~~~--~~~~~~~l 193 (343)
T 3gaz_A 147 QVQDGQTVLIQGGGGGVGHVAIQIALARG--ARVFAT-ARGS--DLEYVRDL 193 (343)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEE-ECHH--HHHHHHHH
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHCC--CEEEEE-eCHH--HHHHHHHc
Confidence 46789999999965544 55566666655 478888 4432 23445444
No 384
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=21.13 E-value=2.1e+02 Score=29.19 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=50.2
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-------chHHHHhc-----
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-------NAISYIIH----- 521 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D-------sAvs~iM~----- 521 (559)
..++++|-|.+..+..++....+.| -+|++. .|.+.|...+ +...|+.+..+.. .++-..+.
T Consensus 140 ~~~v~~t~G~~~al~~~~~~l~~~G--d~Vlv~--~p~y~~~~~~--~~~~g~~~~~v~~~~~g~d~~~L~~~l~~~~~~ 213 (448)
T 3aow_A 140 DNDIMITSGSQQALDLIGRVFLNPG--DIVVVE--APTYLAALQA--FNFYEPQYIQIPLDDEGMKVEILEEKLKELKSQ 213 (448)
T ss_dssp TSEEEEESSHHHHHHHHHHHHCCTT--CEEEEE--ESCCHHHHHH--HHTTCCEEEEEEEETTEECHHHHHHHHHHHHHT
T ss_pred hhhEEEeCcHHHHHHHHHHHHcCCC--CEEEEe--CCChHHHHHH--HHHcCCEEEEeccCCCCCCHHHHHHHHhhhhcc
Confidence 3467777777777666666554334 345553 3667665433 3346777776652 23444443
Q ss_pred --cccEEEEcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 522 --EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 522 --~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
++..|++=..---..|.++..-=-..|+-+|++|++.
T Consensus 214 ~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~ 252 (448)
T 3aow_A 214 GKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFI 252 (448)
T ss_dssp TCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCE
T ss_pred CCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCE
Confidence 2333322111111224444332223566678888775
No 385
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=21.09 E-value=3.8e+02 Score=26.94 Aligned_cols=65 Identities=17% Similarity=0.170 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHHHhCC---ceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe--cchHHHHhccccEEEEc
Q 008627 464 SSAVEMILQHAHELGK---QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--INAISYIIHEVTRVFLG 529 (559)
Q Consensus 464 SstV~~iL~~A~e~Gk---~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~--DsAvs~iM~~VdkVlLG 529 (559)
..|-..+++-+.+.+. .-+|+|+ .|-..=|+-++..|...|..||++. -..+..+++++|.||..
T Consensus 142 PcTp~gv~~lL~~~~i~l~Gk~vvVI-G~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~A 211 (285)
T 3l07_A 142 SCTPKGIMTMLREYGIKTEGAYAVVV-GASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIVA 211 (285)
T ss_dssp CHHHHHHHHHHHHTTCCCTTCEEEEE-CCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHHTTCSEEEEC
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEE-CCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHhcccCCEEEEC
Confidence 3444454444433222 1245555 4434457777777777777776653 22456667777877654
No 386
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=21.08 E-value=2e+02 Score=28.04 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=29.6
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~ 512 (559)
..+++|-|.+..+..++....+.|+ -+|++. .|.+.+...+- ...|.++..+.
T Consensus 76 ~~v~~~~G~~~ai~~~~~~~~~~g~-d~Vl~~--~p~~~~~~~~~--~~~g~~~~~v~ 128 (356)
T 1fg7_A 76 EQVLVSRGADEGIELLIRAFCEPGK-DAILYC--PPTYGMYSVSA--ETIGVECRTVP 128 (356)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTTT-CEEEEC--SSSCTHHHHHH--HHHTCEEEECC
T ss_pred HHEEEcCCHHHHHHHHHHHHhCCCC-CEEEEe--CCChHHHHHHH--HHcCCEEEEee
Confidence 4577777766666655554433331 355554 36776655432 23577766664
No 387
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=20.98 E-value=4.7e+02 Score=25.61 Aligned_cols=99 Identities=16% Similarity=0.128 Sum_probs=49.1
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecc----------hHHHHhc-c
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH-E 522 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~Ds----------Avs~iM~-~ 522 (559)
...+++|-|.+..+..++..+.+.| -+|++.+ |.+.+...+ +...|+.+..+... ++-..+. +
T Consensus 101 ~~~v~~t~g~~~al~~~~~~l~~~g--d~Vl~~~--~~~~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 174 (406)
T 1xi9_A 101 PDDVRVTAAVTEALQLIFGALLDPG--DEILVPG--PSYPPYTGL--VKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDR 174 (406)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCHHHHHH--HHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTT
T ss_pred HHHEEEcCChHHHHHHHHHHhCCCC--CEEEEcC--CCCccHHHH--HHHcCCEEEEeecCCCcCCcCCHHHHHHhhCcC
Confidence 3467777777777666666553333 3455543 556554332 33467777666522 1222222 2
Q ss_pred ccEEEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 523 VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
+..|++- ..--..|.++..-=-..|+-+|++|++.+
T Consensus 175 ~~~v~i~-~p~nptG~~~~~~~l~~i~~~a~~~~~~l 210 (406)
T 1xi9_A 175 TKAIAVI-NPNNPTGALYDKKTLEEILNIAGEYEIPV 210 (406)
T ss_dssp EEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHHTCCE
T ss_pred ceEEEEE-CCCCCCCCCcCHHHHHHHHHHHHHcCCEE
Confidence 3334331 21123344443322345666788888753
No 388
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*
Probab=20.98 E-value=1.4e+02 Score=29.30 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=27.6
Q ss_pred cccCCCEEEEecCcHHH-HHHHHHHHHhCCceEEEEcCCCC
Q 008627 451 KIRDGDVLLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRP 490 (559)
Q Consensus 451 ~I~dGdvILT~g~SstV-~~iL~~A~e~Gk~FrViVvESRP 490 (559)
.++.|++||.+|.++.| ..++..|+..| .+|++++..+
T Consensus 152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G--~~V~~~~~~~ 190 (345)
T 2j3h_A 152 SPKEGETVYVSAASGAVGQLVGQLAKMMG--CYVVGSAGSK 190 (345)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCH
Confidence 46789999999986655 45556666666 4799888653
No 389
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=20.97 E-value=5e+02 Score=24.66 Aligned_cols=72 Identities=10% Similarity=0.093 Sum_probs=38.3
Q ss_pred CEEEEecCc---HHHHHHHHHHHHh-CCceEE-EEcCCCCCchHHHHHHHHHhCCC-ceEEEec-chHHHHhccccEEEE
Q 008627 456 DVLLTYGSS---SAVEMILQHAHEL-GKQFRV-VIVDSRPKHEGKLLLRRLVRKGL-SCTYTHI-NAISYIIHEVTRVFL 528 (559)
Q Consensus 456 dvILT~g~S---stV~~iL~~A~e~-Gk~FrV-iVvESRP~~EG~~LAk~L~~~GI-~vTyI~D-sAvs~iM~~VdkVlL 528 (559)
.+|+.++.+ .-...+|.+|.+. .+.+++ +++-..+. .++.+.+.+.|+ +|+++-- ..+..+|..+|.+++
T Consensus 184 ~~il~~~g~~~~~k~~~~li~a~~~l~~~~~~l~i~G~~~~---~~l~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~ 260 (364)
T 1f0k_A 184 VRVLVVGGSQGARILNQTMPQVAAKLGDSVTIWHQSGKGSQ---QSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVC 260 (364)
T ss_dssp EEEEEECTTTCCHHHHHHHHHHHHHHGGGEEEEEECCTTCH---HHHHHHHHHTTCTTSEEESCCSCHHHHHHHCSEEEE
T ss_pred cEEEEEcCchHhHHHHHHHHHHHHHhcCCcEEEEEcCCchH---HHHHHHHhhcCCCceEEecchhhHHHHHHhCCEEEE
Confidence 356666533 1222334343321 125774 44544441 344444555565 4665542 468888999999987
Q ss_pred cc
Q 008627 529 GA 530 (559)
Q Consensus 529 GA 530 (559)
-+
T Consensus 261 ~s 262 (364)
T 1f0k_A 261 RS 262 (364)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 390
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=20.80 E-value=2e+02 Score=27.12 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=49.5
Q ss_pred CCCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhc------
Q 008627 454 DGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH------ 521 (559)
Q Consensus 454 dGdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~------ 521 (559)
.|.+||..|-|+-+- .+.+...++| .+|++++.|.......++.+|.+.|..+.++. | ..+..++.
T Consensus 17 ~~k~~lVTGas~gIG~aia~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 94 (270)
T 3is3_A 17 DGKVALVTGSGRGIGAAVAVHLGRLG--AKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHF 94 (270)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 356788777776654 4444444544 68888888776666778888888888877764 3 23444443
Q ss_pred -cccEEEEcce
Q 008627 522 -EVTRVFLGAS 531 (559)
Q Consensus 522 -~VdkVlLGAd 531 (559)
.+|.+|--|-
T Consensus 95 g~id~lvnnAg 105 (270)
T 3is3_A 95 GHLDIAVSNSG 105 (270)
T ss_dssp SCCCEEECCCC
T ss_pred CCCCEEEECCC
Confidence 5677766553
No 391
>1ex2_A Protein MAF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SUC PO4; 1.85A {Bacillus subtilis} SCOP: c.51.4.2 PDB: 1exc_A*
Probab=20.70 E-value=1.7e+02 Score=27.60 Aligned_cols=78 Identities=12% Similarity=0.212 Sum_probs=46.7
Q ss_pred EecCcHHH-HHHHHHHHHhCCceEEEEc---CC-CCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcceeee
Q 008627 460 TYGSSSAV-EMILQHAHELGKQFRVVIV---DS-RPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (559)
Q Consensus 460 T~g~SstV-~~iL~~A~e~Gk~FrViVv---ES-RP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAdaIl 534 (559)
.++.+|-- .++|..+ |..|.|+.. |+ .+...-.+++.+|+..+- .++...+. -+ ++||||.|+
T Consensus 6 ILAS~SPrR~eLL~~~---gi~f~v~~~~iDE~~~~~~~p~~~v~~lA~~KA-------~av~~~~~-~~-~VigaDTvV 73 (189)
T 1ex2_A 6 ILASQSPRRKELLDLL---QLPYSIIVSEVEEKLNRNFSPEENVQWLAKQKA-------KAVADLHP-HA-IVIGADTMV 73 (189)
T ss_dssp EECCCCHHHHHHHHTT---CCCCEECCCCCCCCCCTTSCHHHHHHHHHHHHH-------HHHHHHCT-TS-EEEEEEEEE
T ss_pred EEECCCHHHHHHHHhC---CCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHH-------HHHHHHcC-CC-eEEEeCeEE
Confidence 34444433 4555544 899998854 44 233334467777775421 12222221 23 799999988
Q ss_pred c-CCceecccchHHHH
Q 008627 535 S-NGTVCSRVGTACVA 549 (559)
Q Consensus 535 a-NGsVvNKvGT~~IA 549 (559)
. ||.++.|-.+..-|
T Consensus 74 ~~~g~ilgKP~~~~eA 89 (189)
T 1ex2_A 74 CLDGECLGKPQDQEEA 89 (189)
T ss_dssp EETTEEECCCSSHHHH
T ss_pred EECCEEcCCCCCHHHH
Confidence 5 88899998887655
No 392
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=20.70 E-value=3.3e+02 Score=25.82 Aligned_cols=96 Identities=13% Similarity=0.057 Sum_probs=51.5
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHH-HHHH-HHhCCCceEEEec---chHHHHhc-cccEEEEc
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LLRR-LVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~-LAk~-L~~~GI~vTyI~D---sAvs~iM~-~VdkVlLG 529 (559)
+.|++-+.+..+..++....+.| -+|++. .|.+.+.. .+.. +...|+++.++.. ..+-..+. ++..|++
T Consensus 15 ~~i~~~sG~~a~~~~~~~~~~~g--~~v~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~- 89 (331)
T 1pff_A 15 ACAATASGMGAIAASVWTFLKAG--DHLISD--DCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLKPNTRIVYF- 89 (331)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEE--SCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCCTTEEEEEE-
T ss_pred eEEEeCChHHHHHHHHHHhcCCC--CEEEEc--CCCcchHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhcCCCeEEEE-
Confidence 45555444555554444443333 456665 46676653 3333 4557999988863 23333343 3444444
Q ss_pred ceeeecCCceecccchHHHHHHHhh-CCCCC
Q 008627 530 ASSVLSNGTVCSRVGTACVAMVAYG-FHIPV 559 (559)
Q Consensus 530 AdaIlaNGsVvNKvGT~~IALaAk~-~~VPV 559 (559)
...--..|.++. -..|+-+|++ +|+++
T Consensus 90 ~~~~nptG~~~~---~~~i~~~~~~~~~~~l 117 (331)
T 1pff_A 90 ETPANPTLKVID---IEDAVKQARKQKDILV 117 (331)
T ss_dssp ESSCTTTCCCCC---HHHHHHHHTTSSSCEE
T ss_pred ECCCCCcCcccC---HHHHHHHHhhhcCCEE
Confidence 222233455553 4567778888 88753
No 393
>2ekd_A Hypothetical protein PH0250; NPPSFA, national project on protein structural and functiona analyses; 2.30A {Pyrococcus horikoshii}
Probab=20.60 E-value=1.2e+02 Score=29.36 Aligned_cols=82 Identities=21% Similarity=0.294 Sum_probs=54.3
Q ss_pred HHhcccCCCEEEE-ecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEE
Q 008627 448 AVTKIRDGDVLLT-YGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRV 526 (559)
Q Consensus 448 Aa~~I~dGdvILT-~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkV 526 (559)
..+.++.|++||. |+.+.-++-+|....+ .+.+.|+|.|= ...+..+.+.|.-.|+++ -++.++..+
T Consensus 8 ~~~~~k~GEtVLVEY~S~~~~e~~~~~ii~-~~~~pilI~Di--lDtl~i~~~~Lkl~G~d~---------~~~~~i~VI 75 (207)
T 2ekd_A 8 FFKLFRVGETVLVEYSGTSRAELLLYYIVN-NSKLPIVVDDI--LDTYYEFYTRLKVAGFDV---------APLENVQVI 75 (207)
T ss_dssp HHTTSCTTCEEEEEECTTSCTHHHHHHHHH-HCSSCBEEEEE--TTHHHHHHHHHHHTTCCC---------HHHHTSEEE
T ss_pred HHhcCCCCCEEEEEeCCCCcHHHHHHHHHH-hCCCcEEEEec--cccHHHHHHHHHhcCCCc---------ccccceeEE
Confidence 3456888998887 6544444444443333 45667777764 334566678888899998 345778888
Q ss_pred EEcceeeecCCceeccc
Q 008627 527 FLGASSVLSNGTVCSRV 543 (559)
Q Consensus 527 lLGAdaIlaNGsVvNKv 543 (559)
=+| ....=|.|+.++
T Consensus 76 KiG--G~~~~GnVv~ri 90 (207)
T 2ekd_A 76 KMG--GTKDIGRVIGRL 90 (207)
T ss_dssp EES--CSCCCSEEEEEE
T ss_pred Eec--ceeeeeeEEEEE
Confidence 888 355777787765
No 394
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=20.56 E-value=2.5e+02 Score=27.98 Aligned_cols=54 Identities=7% Similarity=0.124 Sum_probs=35.2
Q ss_pred hCCceEEEEcCCCCCchHHHHHHHHHhCCCce---------EEEec--chHHHHhccccEEEEcce
Q 008627 477 LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSC---------TYTHI--NAISYIIHEVTRVFLGAS 531 (559)
Q Consensus 477 ~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~v---------TyI~D--sAvs~iM~~VdkVlLGAd 531 (559)
+...++++++-..|.. ..++.+.+.+.|+.. .++.+ .-+..+|..+|.+|++..
T Consensus 222 ~~p~~~lvivG~g~~~-~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~~aDv~vl~ss 286 (374)
T 2xci_A 222 TYSSLKLILVPRHIEN-AKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVGKIAIVGGT 286 (374)
T ss_dssp TCTTCEEEEEESSGGG-HHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGGGEEEEEECSS
T ss_pred hCCCcEEEEECCCHHH-HHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHHhCCEEEECCc
Confidence 3446787777443432 234555666778763 45555 678999999999888753
No 395
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=20.55 E-value=1.2e+02 Score=28.52 Aligned_cols=72 Identities=11% Similarity=0.026 Sum_probs=40.3
Q ss_pred EEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCC-----chHHHHHHHHHhCCCceEEEe----c-chHHHHhccccEEE
Q 008627 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK-----HEGKLLLRRLVRKGLSCTYTH----I-NAISYIIHEVTRVF 527 (559)
Q Consensus 458 ILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~-----~EG~~LAk~L~~~GI~vTyI~----D-sAvs~iM~~VdkVl 527 (559)
++-.|++.-+..+|.+-.+.-..-+|.++.+.-. .-...+.+.|.+.|+++..+. + ...-..+.++|.++
T Consensus 5 l~l~s~~~~~~~~~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~ 84 (206)
T 3l4e_A 5 LFLTSSFKDVVPLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIY 84 (206)
T ss_dssp EEEESCGGGCHHHHHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEE
T ss_pred eEEeecccchHHHHHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEE
Confidence 5555666556555554322112235555553221 234556778888899888773 2 22334566788887
Q ss_pred Ec
Q 008627 528 LG 529 (559)
Q Consensus 528 LG 529 (559)
++
T Consensus 85 l~ 86 (206)
T 3l4e_A 85 VT 86 (206)
T ss_dssp EC
T ss_pred EC
Confidence 76
No 396
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=20.53 E-value=3.9e+02 Score=25.74 Aligned_cols=94 Identities=9% Similarity=0.030 Sum_probs=48.9
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---chHHHHhcc-------ccE
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHE-------VTR 525 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D---sAvs~iM~~-------Vdk 525 (559)
+.|++-+-+..+..+|....+ +.-.|++. .|.+.+. ...+...|+++..+.. ..+-..+.+ +..
T Consensus 105 ~~i~~~sGt~a~~~~l~~~~~--~gd~v~~~--~~~~~~~--~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 178 (399)
T 3tqx_A 105 DTILYSSCFDANGGLFETLLG--PEDAIISD--ELNHASI--IDGIRLCKAQRYRYKNNAMGDLEAKLKEADEKGARFKL 178 (399)
T ss_dssp EEEEESCHHHHHHTTHHHHCC--TTCEEEEE--TTCCHHH--HHHHHSCCSEEEEECTTCTTHHHHHHHHHHTTTCSSEE
T ss_pred cEEEECchHHHHHHHHHHhcC--CCCEEEEC--CcccHHH--HHHHHHcCCceeEeCCCCHHHHHHHHHhhhccCCCceE
Confidence 345554435544444443332 22344443 3555543 3345557888877752 344444543 444
Q ss_pred EEEcceeeecCCceecccchHHHHHHHhhCCCCC
Q 008627 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 526 VlLGAdaIlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
|++.. .--..|.++. -..|+-+|++|++.+
T Consensus 179 v~~~~-~~nptG~~~~---l~~i~~l~~~~~~~l 208 (399)
T 3tqx_A 179 IATDG-VFSMDGIIAD---LKSICDLADKYNALV 208 (399)
T ss_dssp EEEES-EETTTTEECC---HHHHHHHHHHTTCEE
T ss_pred EEEeC-CCCCCCCcCC---HHHHHHHHHHcCCEE
Confidence 44433 3344565555 456777888888753
No 397
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=20.52 E-value=2e+02 Score=23.99 Aligned_cols=54 Identities=19% Similarity=0.200 Sum_probs=33.6
Q ss_pred CCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCC-CCCchHHHHHHHHHhC--CCceEEEec
Q 008627 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDS-RPKHEGKLLLRRLVRK--GLSCTYTHI 513 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~e~Gk~FrViVvES-RP~~EG~~LAk~L~~~--GI~vTyI~D 513 (559)
|-.|.++....-+ +....+ ..+.++++|- -|...|.++++.|.+. .+++.+++.
T Consensus 38 g~~v~~~~~~~~a---~~~l~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 94 (153)
T 3hv2_A 38 PYTLHFARDATQA---LQLLAS--REVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTG 94 (153)
T ss_dssp SCEEEEESSHHHH---HHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECC
T ss_pred CcEEEEECCHHHH---HHHHHc--CCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEEC
Confidence 4455554443333 333322 4588888885 4788899999999875 455555554
No 398
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=20.36 E-value=2.4e+02 Score=28.70 Aligned_cols=69 Identities=12% Similarity=0.005 Sum_probs=42.2
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEE--ecchHHHHhccccEEEE
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT--HINAISYIIHEVTRVFL 528 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI--~DsAvs~iM~~VdkVlL 528 (559)
.|.+|+.+|....=..+.+.++..| .+|+++|.++.. .+.++++ .|..+... ....+..+++++|.||.
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~G--a~V~~~d~~~~~--l~~~~~~--~g~~~~~~~~~~~~l~~~l~~aDvVi~ 237 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMG--ATVTVLDINIDK--LRQLDAE--FCGRIHTRYSSAYELEGAVKRADLVIG 237 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHH--HHHHHHH--TTTSSEEEECCHHHHHHHHHHCSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCHHH--HHHHHHh--cCCeeEeccCCHHHHHHHHcCCCEEEE
Confidence 4789999999655566777776656 489999876532 1112221 35443221 23345556678888887
No 399
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=20.35 E-value=1.7e+02 Score=28.66 Aligned_cols=51 Identities=16% Similarity=0.034 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCceEEEEcCCCCCch--HHHHHHHHHhCCCceEEEe-cchHHHHh
Q 008627 469 MILQHAHELGKQFRVVIVDSRPKHE--GKLLLRRLVRKGLSCTYTH-INAISYII 520 (559)
Q Consensus 469 ~iL~~A~e~Gk~FrViVvESRP~~E--G~~LAk~L~~~GI~vTyI~-DsAvs~iM 520 (559)
..|....++|+. -|++.+.-|..- |..+++.|.+.||+|.+|+ .+++.++.
T Consensus 83 ~~l~~~~~~G~~-Vv~L~~GDP~i~g~g~~l~~~l~~~gi~veviPGiSs~~aa~ 136 (280)
T 1s4d_A 83 LRLVELARAGNR-VLRLKGGDPFVFGRGGEEALTLVEHQVPFRIVPGITAGIGGL 136 (280)
T ss_dssp HHHHHHHHTTCC-EEEEESBCTTSSSSHHHHHHHHHTTTCCEEEECCCCTTTHHH
T ss_pred HHHHHHHhCCCe-EEEEcCCCCccccCHHHHHHHHHHCCCCEEEEcCccHHHHHH
Confidence 334444445664 455667888764 5577889999999999998 55555554
No 400
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1
Probab=20.30 E-value=2.6e+02 Score=28.76 Aligned_cols=70 Identities=13% Similarity=0.149 Sum_probs=45.1
Q ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEcc
Q 008627 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (559)
Q Consensus 454 dGdvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGA 530 (559)
.|.+|+.+|....-..++..+...|- -+|++++-.+. ...+++++| |.. ++....+..++..+|.||...
T Consensus 166 ~g~~VlIiGaG~iG~~~a~~l~~~G~-~~V~v~~r~~~-ra~~la~~~---g~~--~~~~~~l~~~l~~aDvVi~at 235 (404)
T 1gpj_A 166 HDKTVLVVGAGEMGKTVAKSLVDRGV-RAVLVANRTYE-RAVELARDL---GGE--AVRFDELVDHLARSDVVVSAT 235 (404)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCC-SEEEEECSSHH-HHHHHHHHH---TCE--ECCGGGHHHHHHTCSEEEECC
T ss_pred cCCEEEEEChHHHHHHHHHHHHHCCC-CEEEEEeCCHH-HHHHHHHHc---CCc--eecHHhHHHHhcCCCEEEEcc
Confidence 68999999997777777777776662 17888875432 122455554 443 333334556667899998763
No 401
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=20.30 E-value=2.6e+02 Score=26.72 Aligned_cols=101 Identities=14% Similarity=0.111 Sum_probs=54.4
Q ss_pred CCCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHh-CCCceEEEe-c----chHHHHhc--ccc
Q 008627 454 DGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTH-I----NAISYIIH--EVT 524 (559)
Q Consensus 454 dGdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~-~GI~vTyI~-D----sAvs~iM~--~Vd 524 (559)
.+.+||..|-++-+- .+.+...++| .+|++++-++.. ...++..+.. .+-.+.++. | ..+..++. .+|
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHG--YDVVIADNLVNS-KREAIARIEKITGKTPAFHETDVSDERALARIFDAHPIT 80 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTT--CEEEEECCCSSS-CTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCC
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCC--CcEEEEecCCcc-hHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCc
Confidence 356889998887774 4444445544 678887644432 2223333332 133444442 2 34566666 577
Q ss_pred EEEEcceeeecCC--------ceecccchHHHHHHHhhCCC
Q 008627 525 RVFLGASSVLSNG--------TVCSRVGTACVAMVAYGFHI 557 (559)
Q Consensus 525 kVlLGAdaIlaNG--------sVvNKvGT~~IALaAk~~~V 557 (559)
.||--|-....+. .-.|-.||..+.-+|+..++
T Consensus 81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~ 121 (341)
T 3enk_A 81 AAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAV 121 (341)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7765542211000 01256688888877777665
No 402
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=20.27 E-value=2.1e+02 Score=27.38 Aligned_cols=53 Identities=19% Similarity=0.269 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhCCceEEEEcCCCCCc--hHHHHHHHHHhCCCceEEEe-cchHHHHhc
Q 008627 467 VEMILQHAHELGKQFRVVIVDSRPKH--EGKLLLRRLVRKGLSCTYTH-INAISYIIH 521 (559)
Q Consensus 467 V~~iL~~A~e~Gk~FrViVvESRP~~--EG~~LAk~L~~~GI~vTyI~-DsAvs~iM~ 521 (559)
+..++.. .++|++ -|+++.+.|.. -|..+++.|.+.||+|.+|+ .+++.++..
T Consensus 86 ~~~i~~~-~~~g~~-Va~l~~GDP~~~~~~~~l~~~l~~~gi~v~viPGiSs~~aa~a 141 (259)
T 2e0n_A 86 YASMAEE-VQAGRR-VAVVSVGDGGFYSTASAIIERARRDGLDCSMTPGIPAFIAAGS 141 (259)
T ss_dssp HHHHHHH-HHTTCE-EEEEESBCTTBSCTHHHHHHHHHTTTCCEEEECCCCHHHHHHH
T ss_pred HHHHHHH-HHCCCe-EEEEeCCCCcccccHHHHHHHHHHCCCCEEEeCChhHHHHHHH
Confidence 3444433 344654 35555778876 45577888888899999998 566665544
No 403
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynth methyltransferase; HET: SAH; 2.40A {Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Probab=20.19 E-value=1.5e+02 Score=28.87 Aligned_cols=50 Identities=14% Similarity=0.105 Sum_probs=34.0
Q ss_pred HHHHHHhCCceEEEEcCCCCCc--hHHHHHHHHHhCCCceEEEe-cchHHHHhc
Q 008627 471 LQHAHELGKQFRVVIVDSRPKH--EGKLLLRRLVRKGLSCTYTH-INAISYIIH 521 (559)
Q Consensus 471 L~~A~e~Gk~FrViVvESRP~~--EG~~LAk~L~~~GI~vTyI~-DsAvs~iM~ 521 (559)
|....++|++ -|+++...|.. -|..+++.|.+.||+|.+|+ .+++.++..
T Consensus 86 i~~~~~~g~~-Vv~L~~GDP~i~g~~~~l~~~l~~~gi~veviPGiSS~~aa~a 138 (285)
T 1cbf_A 86 MLDRMREGKM-VVRVHTGDPAMYGAIMEQMVLLKREGVDIEIVPGVTSVFAAAA 138 (285)
T ss_dssp HHHHHTTTCC-EEEEESBCTTTTCCCHHHHHHHHHTTCEEEEECCCCHHHHHHH
T ss_pred HHHHHHCCCe-EEEEeCCCccccccHHHHHHHHHHCCCcEEEECCchHHHHHHH
Confidence 3333445665 44555688865 46678888989999999998 566666554
No 404
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=20.13 E-value=2.4e+02 Score=27.54 Aligned_cols=93 Identities=6% Similarity=-0.078 Sum_probs=46.3
Q ss_pred CEEEEecCcHHHHHHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---chHHHHhcc-----ccEEE
Q 008627 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHE-----VTRVF 527 (559)
Q Consensus 456 dvILT~g~SstV~~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~D---sAvs~iM~~-----VdkVl 527 (559)
++++|-|-+..+..++..+.+.| -.|++. .|.+.+...+ +...|..+..+.. ..+-..+.+ +..|+
T Consensus 105 ~v~~~~ggt~a~~~~~~~~~~~g--d~V~~~--~p~~~~~~~~--~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~v~ 178 (398)
T 3a2b_A 105 AAILFSTGFQSNLGPLSCLMGRN--DYILLD--ERDHASIIDG--SRLSFSKVIKYGHNNMEDLRAKLSRLPEDSAKLIC 178 (398)
T ss_dssp EEEEESSHHHHHHHHHHHSSCTT--CEEEEE--TTCCHHHHHH--HHHSSSEEEEECTTCHHHHHHHHHTSCSSSCEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCC--CEEEEC--CccCHHHHHH--HHHcCCceEEeCCCCHHHHHHHHHhhccCCceEEE
Confidence 56666666655555555443323 244443 3555544332 3446777777653 233344433 33444
Q ss_pred EcceeeecCCceecccchHHHHHHHhhCCCC
Q 008627 528 LGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (559)
Q Consensus 528 LGAdaIlaNGsVvNKvGT~~IALaAk~~~VP 558 (559)
+. ..-...|.++. -..|+-+|++|++.
T Consensus 179 ~~-~~~nptG~~~~---~~~l~~~~~~~~~~ 205 (398)
T 3a2b_A 179 TD-GIFSMEGDIVN---LPELTSIANEFDAA 205 (398)
T ss_dssp EE-SBCTTTCCBCC---HHHHHHHHHHHTCE
T ss_pred Ee-CCCCCCCCccC---HHHHHHHHHHcCcE
Confidence 32 22223355543 35666677777765
No 405
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=20.13 E-value=6.3e+02 Score=24.83 Aligned_cols=95 Identities=15% Similarity=0.223 Sum_probs=43.4
Q ss_pred CCEEEEecCcHHHHHHHHHHH--------HhCCceEEEEcCCCCCch-------------HH-HHHHHHHh-CCCceEEE
Q 008627 455 GDVLLTYGSSSAVEMILQHAH--------ELGKQFRVVIVDSRPKHE-------------GK-LLLRRLVR-KGLSCTYT 511 (559)
Q Consensus 455 GdvILT~g~SstV~~iL~~A~--------e~Gk~FrViVvESRP~~E-------------G~-~LAk~L~~-~GI~vTyI 511 (559)
.++++|-|.+..+..++..+. +.|. +|++.+ |.+. +. .....+.+ .|+.+.++
T Consensus 79 ~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd--~vl~~~--p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v 154 (432)
T 3a9z_A 79 QDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGR--TVDQIS--PEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFV 154 (432)
T ss_dssp GGEEEESCHHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEE
T ss_pred CeEEEeCChHHHHHHHHHHHHhhhhhccccCCc--cccccc--cccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEE
Confidence 467888777777666655542 2343 233221 2222 11 22344444 58888888
Q ss_pred ecc---------hHHHHhccccEEEEcceeeecCCceecccchHHHHHHHhhCC
Q 008627 512 HIN---------AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFH 556 (559)
Q Consensus 512 ~Ds---------Avs~iM~~VdkVlLGAdaIlaNGsVvNKvGT~~IALaAk~~~ 556 (559)
... .+-..+.+-.++|+=...-...|.++.. ..|+-+|+.++
T Consensus 155 ~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~---~~i~~l~~~~~ 205 (432)
T 3a9z_A 155 PVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPI---SEISRRIKALN 205 (432)
T ss_dssp CCCTTTSSCCHHHHHHTCCTTEEEEECCSBCTTTCBBCCH---HHHHHHHHHHH
T ss_pred ecCcccCCcCHHHHHHhccCCceEEEEECcccCcccccCH---HHHHHHHHhcC
Confidence 632 1222222223444333333344666553 34666777766
No 406
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=20.08 E-value=2.1e+02 Score=30.19 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=50.1
Q ss_pred CCCEEEEecCcHHHHH-HHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEccee
Q 008627 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (559)
Q Consensus 454 dGdvILT~g~SstV~~-iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLGAda 532 (559)
+...|+.+|-.++=.. +-+.+++ +.++|.+.|.++. .+..+|.+.||++.+-.+.. .+..+|.|+++.-
T Consensus 21 ~~~~v~viGiG~sG~s~~A~~l~~--~G~~V~~~D~~~~----~~~~~l~~~gi~~~~g~~~~---~~~~~d~vV~Spg- 90 (494)
T 4hv4_A 21 RVRHIHFVGIGGAGMGGIAEVLAN--EGYQISGSDLAPN----SVTQHLTALGAQIYFHHRPE---NVLDASVVVVSTA- 90 (494)
T ss_dssp -CCEEEEETTTSTTHHHHHHHHHH--TTCEEEEECSSCC----HHHHHHHHTTCEEESSCCGG---GGTTCSEEEECTT-
T ss_pred cCCEEEEEEEcHhhHHHHHHHHHh--CCCeEEEEECCCC----HHHHHHHHCCCEEECCCCHH---HcCCCCEEEECCC-
Confidence 3456777655432222 2223333 3478999998754 34567889999876543332 2457888877641
Q ss_pred eecCCceecccchHHHHHHHhhCCCCC
Q 008627 533 VLSNGTVCSRVGTACVAMVAYGFHIPV 559 (559)
Q Consensus 533 IlaNGsVvNKvGT~~IALaAk~~~VPV 559 (559)
|-. +...-..|++.||||
T Consensus 91 i~~---------~~p~~~~a~~~gi~v 108 (494)
T 4hv4_A 91 ISA---------DNPEIVAAREARIPV 108 (494)
T ss_dssp SCT---------TCHHHHHHHHTTCCE
T ss_pred CCC---------CCHHHHHHHHCCCCE
Confidence 211 223445677777775
No 407
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Probab=20.06 E-value=3.7e+02 Score=24.71 Aligned_cols=74 Identities=16% Similarity=0.237 Sum_probs=44.4
Q ss_pred CCEEEEecCcHHHH-HHHHHHHHhCCceEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----chHHHHhc-------
Q 008627 455 GDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH------- 521 (559)
Q Consensus 455 GdvILT~g~SstV~-~iL~~A~e~Gk~FrViVvESRP~~EG~~LAk~L~~~GI~vTyI~-D----sAvs~iM~------- 521 (559)
|.+||..|-|+-+- .+.+...++| .+|++++-+......+++.+|.+.|-.+.++. | ..+..++.
T Consensus 4 ~k~vlVTGas~giG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (246)
T 2uvd_A 4 GKVALVTGASRGIGRAIAIDLAKQG--ANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFG 81 (246)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 56777777776664 4444444544 57887765333445566778877777776653 3 23444444
Q ss_pred cccEEEEcc
Q 008627 522 EVTRVFLGA 530 (559)
Q Consensus 522 ~VdkVlLGA 530 (559)
.+|.||--|
T Consensus 82 ~id~lv~nA 90 (246)
T 2uvd_A 82 QVDILVNNA 90 (246)
T ss_dssp CCCEEEECC
T ss_pred CCCEEEECC
Confidence 577777655
No 408
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=20.03 E-value=1.9e+02 Score=32.52 Aligned_cols=47 Identities=23% Similarity=0.371 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhCCceEEEEcCCCCCc-h--HHHHHHHHHhCCCceEEEe
Q 008627 465 SAVEMILQHAHELGKQFRVVIVDSRPKH-E--GKLLLRRLVRKGLSCTYTH 512 (559)
Q Consensus 465 stV~~iL~~A~e~Gk~FrViVvESRP~~-E--G~~LAk~L~~~GI~vTyI~ 512 (559)
+.+...|..|++.|++.+|++ |....+ + ....++.|.++||.|.|..
T Consensus 379 ~~I~~AL~~AA~rGV~VrVLv-d~~a~~~~~~n~~~~~~L~~aGV~V~~~~ 428 (687)
T 1xdp_A 379 SRIIDSMIHAAHNGKKVTVVV-ELQARFDEEANIHWAKRLTEAGVHVIFSA 428 (687)
T ss_dssp CHHHHHHHHHHHTTCEEEEEE-CTTCSSTTTTTTTTTHHHHHHTCEEEECC
T ss_pred HHHHHHHHHHHhcCCEEEEEE-CCCcccchhhHHHHHHHHHHCCCEEEEec
Confidence 566677888888888888766 444432 2 3456888999999887754
No 409
>2gi4_A Possible phosphotyrosine protein phosphatase; low molecular weight, protein tyrosine phosphatase, bacterial phosphatase; NMR {Campylobacter jejuni}
Probab=20.01 E-value=1e+02 Score=27.84 Aligned_cols=68 Identities=12% Similarity=0.134 Sum_probs=45.7
Q ss_pred cCcHHHHHHHHHHHH-hCC--ceEEEEcCCCCCchHH----HHHHHHHhCCCceEEEecchH-HHHhccccEEEEc
Q 008627 462 GSSSAVEMILQHAHE-LGK--QFRVVIVDSRPKHEGK----LLLRRLVRKGLSCTYTHINAI-SYIIHEVTRVFLG 529 (559)
Q Consensus 462 g~SstV~~iL~~A~e-~Gk--~FrViVvESRP~~EG~----~LAk~L~~~GI~vTyI~DsAv-s~iM~~VdkVlLG 529 (559)
|+|...+.+|++... .|. .|.|.-.-+.++..|. ...+.|.+.||++.-..--.+ ...+.+.|.||.=
T Consensus 13 cRSpmAEai~~~~~~~~gl~~~~~v~SAGt~~~~~g~~~~~~a~~~l~~~Gid~s~~~ar~l~~~d~~~~DlIi~M 88 (156)
T 2gi4_A 13 CRSPMAEFIMKDLVKKANLEKEFFINSAGTSGEHDGEGMHYGTKNKLAQLNIEHKNFTSKKLTQKLCDESDFLITM 88 (156)
T ss_dssp SHHHHHHHHHHHHHHHHTTTTTCEEEEEBSSCSSTTCCCCHHHHHHHHHTSCSCCCCCCCBCCHHHHTTCSEEECC
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEeeecCCcccCCCCCHHHHHHHHHcCCCccCCccccCCHHHhccCCEEEEE
Confidence 678899999998654 343 5899988888876554 457888899998653222222 2334567877654
No 410
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium}
Probab=20.00 E-value=6.6e+02 Score=25.03 Aligned_cols=37 Identities=16% Similarity=0.021 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhCCCceEEEecchHHHHhccccEEEEc
Q 008627 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (559)
Q Consensus 493 EG~~LAk~L~~~GI~vTyI~DsAvs~iM~~VdkVlLG 529 (559)
+-.+.++.+.+.|+++..|+++.-+.+.+.+|.+|.=
T Consensus 117 e~~~a~~~ak~~Ga~vi~IT~~~~S~La~~ad~~l~~ 153 (355)
T 2a3n_A 117 ESVAIAEWCKAQGIRVVAITKNADSPLAQAATWHIPM 153 (355)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCTTSHHHHTCSEEEEC
T ss_pred HHHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEEe
Confidence 3446678888899999999998888888899988753
Done!