BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008628
(559 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 162/505 (32%), Positives = 233/505 (46%), Gaps = 48/505 (9%)
Query: 9 LYFLDLSRN-FLTSIDHLPWKNLEYLTLDSNLLQGSLPDLPPHMVELL----ISNNSLTG 63
L L++S N F+ I LP K+L+YL+L N G +PD + L +S N G
Sbjct: 249 LKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308
Query: 64 EIPSSFCNLSSIQYLNLSNNSLSGQIPQ--CLGNSTLETLDLRMNNFQGTIPQTYAK-GC 120
+P F + S ++ L LS+N+ SG++P L L+ LDL N F G +P++
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368
Query: 121 NLSYLRLSGNHLEGPLPPSLINCVK--LHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNN 178
+L L LS N+ GP+ P+L K L L + NN +G IP L N + L L++ N
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428
Query: 179 SLSGPIPECLGN-STLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVN 237
LSG IP LG+ S L L + +N G +PQ L +L L+ N L G +P L N
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488
Query: 238 CRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPI----GDTKTRVPFPKLRI 293
C +L I + NN++ P W+ L L +L L +N F G I GD ++ +
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI------W 542
Query: 294 IDLSYNRFTGVLPIWYL---------------------NGFKAMMHGDDNSTEVNYMRSL 332
+DL+ N F G +P +G K HG N E +RS
Sbjct: 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602
Query: 333 NYSYYESISLTMKGNNIQMERILTTFAT------IDLSSNRFQGEISQVLGKLNSLKSLN 386
+ + + + + TF +D+S N G I + +G + L LN
Sbjct: 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662
Query: 387 ISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQXXXXXXXXXXXXXXXXXEGPIPE 446
+ HN+++G IP + +L L LDLSSNKL GRIP GPIPE
Sbjct: 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Query: 447 GPQFNTFANDSYSGNSGLCGFPLSK 471
QF TF + N GLCG+PL +
Sbjct: 723 MGQFETFPPAKFLNNPGLCGYPLPR 747
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 127/421 (30%), Positives = 189/421 (44%), Gaps = 65/421 (15%)
Query: 1 MWDIGVHTLYFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGS-LPDLPPH----MVELL 55
M + V L F + S S+ +L +L L L SN G LP+L + + EL
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLS-ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 56 ISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGTIPQ 114
+ NN TG+IP + N S + L+LS N LSG IP LG+ S L L L +N +G IPQ
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 115 TYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLN 174
L L L N L G +P L NC L+++ + NN L+G IP+++G +L+ L
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 175 VRNNSLSGPIPECLGNS-TLEILDMRMNKFSGSLPQTFAKSCVLVSLN-LNGNRL----- 227
+ NNS SG IP LG+ +L LD+ N F+G++P K ++ N + G R
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580
Query: 228 EGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVP 287
+G LE + + Q+N L + + P D +
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNR-----LSTRNPCNITSRVYGGHTSPTFDNNGSMM 635
Query: 288 FPKLRIIDLSYNRFTGVLP--------IWYLNGFKAMMHGDDNST---EVNYMRSLNYSY 336
F +D+SYN +G +P ++ LN + H D + + EV +R LN
Sbjct: 636 F-----LDMSYNMLSGYIPKEIGSMPYLFILN----LGHNDISGSIPDEVGDLRGLN--- 683
Query: 337 YESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGI 396
+DLSSN+ G I Q + L L +++S+NNL+G I
Sbjct: 684 -----------------------ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720
Query: 397 P 397
P
Sbjct: 721 P 721
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 122/428 (28%), Positives = 188/428 (43%), Gaps = 75/428 (17%)
Query: 51 MVELLISNNSLTGEIPS--SFCNLSSIQYLNLSNNSLS--GQIPQCLGNSTLETLDLRMN 106
+ L +S NSL+G + + S + S +++LN+S+N+L G++ L ++LE LDL N
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161
Query: 107 NFQGT--IPQTYAKGC-NLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEY 163
+ G + + GC L +L +SGN + G + S CV L FLDV +NN S IP +
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-F 218
Query: 164 LGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLN 223
LG +C S L+ LD+ NK SG + + L LN++
Sbjct: 219 LG--------------------DC---SALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255
Query: 224 GNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLD-VLPELQVLTLRSNRFRGPI--- 279
N+ GP+PP + + L+ + + N+ P +L L L L N F G +
Sbjct: 256 SNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313
Query: 280 ------------------GD--TKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHG 319
G+ T + L+++DLS+N F+G LP N +++
Sbjct: 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373
Query: 320 DDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKL 379
D + S N+S +L N T + L +N F G+I L
Sbjct: 374 D--------LSSNNFSGPILPNLCQNPKN--------TLQELYLQNNGFTGKIPPTLSNC 417
Query: 380 NSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQXXXXXXXXXXXXXXXX 439
+ L SL++S N L+G IPSSL +L++L L L N L G IP +
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477
Query: 440 XEGPIPEG 447
G IP G
Sbjct: 478 LTGEIPSG 485
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 162/505 (32%), Positives = 233/505 (46%), Gaps = 48/505 (9%)
Query: 9 LYFLDLSRN-FLTSIDHLPWKNLEYLTLDSNLLQGSLPDLPPHMVELL----ISNNSLTG 63
L L++S N F+ I LP K+L+YL+L N G +PD + L +S N G
Sbjct: 246 LKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 305
Query: 64 EIPSSFCNLSSIQYLNLSNNSLSGQIPQ--CLGNSTLETLDLRMNNFQGTIPQTYAK-GC 120
+P F + S ++ L LS+N+ SG++P L L+ LDL N F G +P++
Sbjct: 306 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 365
Query: 121 NLSYLRLSGNHLEGPLPPSLINCVK--LHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNN 178
+L L LS N+ GP+ P+L K L L + NN +G IP L N + L L++ N
Sbjct: 366 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 425
Query: 179 SLSGPIPECLGN-STLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVN 237
LSG IP LG+ S L L + +N G +PQ L +L L+ N L G +P L N
Sbjct: 426 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 485
Query: 238 CRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPI----GDTKTRVPFPKLRI 293
C +L I + NN++ P W+ L L +L L +N F G I GD ++ +
Sbjct: 486 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI------W 539
Query: 294 IDLSYNRFTGVLPIWYL---------------------NGFKAMMHGDDNSTEVNYMRSL 332
+DL+ N F G +P +G K HG N E +RS
Sbjct: 540 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 599
Query: 333 NYSYYESISLTMKGNNIQMERILTTFAT------IDLSSNRFQGEISQVLGKLNSLKSLN 386
+ + + + + TF +D+S N G I + +G + L LN
Sbjct: 600 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 659
Query: 387 ISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQXXXXXXXXXXXXXXXXXEGPIPE 446
+ HN+++G IP + +L L LDLSSNKL GRIP GPIPE
Sbjct: 660 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Query: 447 GPQFNTFANDSYSGNSGLCGFPLSK 471
QF TF + N GLCG+PL +
Sbjct: 720 MGQFETFPPAKFLNNPGLCGYPLPR 744
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 127/421 (30%), Positives = 189/421 (44%), Gaps = 65/421 (15%)
Query: 1 MWDIGVHTLYFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGS-LPDLPPH----MVELL 55
M + V L F + S S+ +L +L L L SN G LP+L + + EL
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLS-ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 397
Query: 56 ISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGTIPQ 114
+ NN TG+IP + N S + L+LS N LSG IP LG+ S L L L +N +G IPQ
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 115 TYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLN 174
L L L N L G +P L NC L+++ + NN L+G IP+++G +L+ L
Sbjct: 458 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
Query: 175 VRNNSLSGPIPECLGNS-TLEILDMRMNKFSGSLPQTFAKSCVLVSLN-LNGNRL----- 227
+ NNS SG IP LG+ +L LD+ N F+G++P K ++ N + G R
Sbjct: 518 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 577
Query: 228 EGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVP 287
+G LE + + Q+N L + + P D +
Sbjct: 578 DGMKKECHGAGNLLEFQGIRSEQLNR-----LSTRNPCNITSRVYGGHTSPTFDNNGSMM 632
Query: 288 FPKLRIIDLSYNRFTGVLP--------IWYLNGFKAMMHGDDNST---EVNYMRSLNYSY 336
F +D+SYN +G +P ++ LN + H D + + EV +R LN
Sbjct: 633 F-----LDMSYNMLSGYIPKEIGSMPYLFILN----LGHNDISGSIPDEVGDLRGLN--- 680
Query: 337 YESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGI 396
+DLSSN+ G I Q + L L +++S+NNL+G I
Sbjct: 681 -----------------------ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 717
Query: 397 P 397
P
Sbjct: 718 P 718
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 122/428 (28%), Positives = 188/428 (43%), Gaps = 75/428 (17%)
Query: 51 MVELLISNNSLTGEIPS--SFCNLSSIQYLNLSNNSLS--GQIPQCLGNSTLETLDLRMN 106
+ L +S NSL+G + + S + S +++LN+S+N+L G++ L ++LE LDL N
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 158
Query: 107 NFQGT--IPQTYAKGC-NLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEY 163
+ G + + GC L +L +SGN + G + S CV L FLDV +NN S IP +
Sbjct: 159 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-F 215
Query: 164 LGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLN 223
LG +C S L+ LD+ NK SG + + L LN++
Sbjct: 216 LG--------------------DC---SALQHLDISGNKLSGDFSRAISTCTELKLLNIS 252
Query: 224 GNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLD-VLPELQVLTLRSNRFRGPI--- 279
N+ GP+PP + + L+ + + N+ P +L L L L N F G +
Sbjct: 253 SNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 310
Query: 280 ------------------GD--TKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHG 319
G+ T + L+++DLS+N F+G LP N +++
Sbjct: 311 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 370
Query: 320 DDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKL 379
D + S N+S +L N T + L +N F G+I L
Sbjct: 371 D--------LSSNNFSGPILPNLCQNPKN--------TLQELYLQNNGFTGKIPPTLSNC 414
Query: 380 NSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQXXXXXXXXXXXXXXXX 439
+ L SL++S N L+G IPSSL +L++L L L N L G IP +
Sbjct: 415 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 474
Query: 440 XEGPIPEG 447
G IP G
Sbjct: 475 LTGEIPSG 482
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 148/337 (43%), Gaps = 56/337 (16%)
Query: 88 QIPQCLGNST-----LETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGP--LPPSL 140
QI + LGN T L T D + G + T + ++ L LSG +L P +P SL
Sbjct: 13 QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72
Query: 141 INCVKLHFLDVGN-NNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMR 199
N L+FL +G NNL GPIP + T L +L + + ++SG IP+ L
Sbjct: 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL----------- 121
Query: 200 MNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWL 259
++ LV+L+ + N L G LPPS+ + +L I N+I+ P
Sbjct: 122 ------------SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
Query: 260 DVLPEL-QVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMH 318
+L +T+ NR G I T + L +DLS N L G +++
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANL---NLAFVDLSRN---------MLEGDASVLF 217
Query: 319 GDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGK 378
G D +T+ ++ SL + + + L +DL +NR G + Q L +
Sbjct: 218 GSDKNTQKIHL--------AKNSLAFDLGKVGLSKNLNG---LDLRNNRIYGTLPQGLTQ 266
Query: 379 LNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNK 415
L L SLN+S NNL G IP NL + ++NK
Sbjct: 267 LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
Query: 59 NSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGTIPQTYA 117
N+L G IP + L+ + YL +++ ++SG IP L TL TLD N GT+P + +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 118 KGCNLSYLRLSGNHLEGPLPPSLINCVKLHF-LDVGNNNLSGPIPEYLGNSTSLSFLNVR 176
NL + GN + G +P S + KL + + N L+G IP N +L+F+++
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LNLAFVDLS 205
Query: 177 NNSLSGPIPECLG------------------------NSTLEILDMRMNKFSGSLPQTFA 212
N L G G + L LD+R N+ G+LPQ
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 213 KSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQ 250
+ L SLN++ N L G +P N + +V NN+
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 86/217 (39%), Gaps = 63/217 (29%)
Query: 6 VHTLYFLDLSRNFLT-----SIDHLPWKNLEYLTLDSNLLQGSLPD----LPPHMVELLI 56
+ TL LD S N L+ SI LP NL +T D N + G++PD + I
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLP--NLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 57 SNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN--------------------- 95
S N LTG+IP +F NL+ + +++LS N L G G+
Sbjct: 182 SRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV 240
Query: 96 ---STLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVG 152
L LDLR N GT+PQ L+ L+ LH L+V
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQ------GLTQLKF------------------LHSLNVS 276
Query: 153 NNNLSGPIPEYLGNSTSLSFLNVRNNS--LSGPIPEC 187
NNL G IP+ GN NN P+P C
Sbjct: 277 FNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 366 NRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIP 421
N G I + KL L L I+H N++G IP L + L +LD S N L+G +P
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 355 LTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 414
LT + ++ G I L ++ +L +L+ S+N L+G +P S+ +L L + N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Query: 415 KLAGRIP 421
+++G IP
Sbjct: 160 RISGAIP 166
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 105/398 (26%), Positives = 161/398 (40%), Gaps = 127/398 (31%)
Query: 38 NLLQGSLPDLPPHMVELLISNNSLTG--EIPSSFCNL--------------SSIQYLNLS 81
NL SLP+LPPH+ L+ S NSLT E+P S +L ++YL +S
Sbjct: 80 NLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVS 139
Query: 82 NNSLSGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLI 141
NN L ++P+ +S L+ +D+ NN +P LPPS
Sbjct: 140 NNQLE-KLPELQNSSFLKIIDVD-NNSLKKLPD---------------------LPPS-- 174
Query: 142 NCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMN 201
L F+ GNN L +PE L N L+ + NNSL ++
Sbjct: 175 ----LEFIAAGNNQLEE-LPE-LQNLPFLTAIYADNNSLK-----------------KLP 211
Query: 202 KFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDV 261
SL A + +L L P L N L I NN + +T P D+
Sbjct: 212 DLPLSLESIVAGNNILEEL------------PELQNLPFLTTIYADNNLL-KTLP---DL 255
Query: 262 LPELQVLTLRSNRFRGPIGDTKTRVP-FPK-LRIIDLSYNRFTGV--LP--IWYLNGFKA 315
P L+ L +R N T +P P+ L +D+S N F+G+ LP ++YLN
Sbjct: 256 PPSLEALNVRDNYL--------TDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA--- 304
Query: 316 MMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNI--------QMERILTTFATIDLSSNR 367
+S E+ + L S E L + N + ++ER++ +F
Sbjct: 305 ------SSNEIRSLCDLPPSLEE---LNVSNNKLIELPALPPRLERLIASF--------- 346
Query: 368 FQGEISQVLGKLNSLKSLNISHNNLTG--GIPSSLRNL 403
+++V +LK L++ +N L IP S+ +L
Sbjct: 347 --NHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDL 382
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 32/145 (22%)
Query: 7 HTLYFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTGEIP 66
+L FLD+S N + + LP NL YL SN ++ SL DLPP + EL +SNN L E+P
Sbjct: 277 QSLTFLDVSENIFSGLSELP-PNLYYLNASSNEIR-SLCDLPPSLEELNVSNNKLI-ELP 333
Query: 67 ----------SSFCNLSSI-------QYLNLSNNSLSG--QIPQCLGNSTLETLDLRMNN 107
+SF +L+ + + L++ N L IP+ + DLRMN+
Sbjct: 334 ALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVE-------DLRMNS 386
Query: 108 FQGTIPQTYAKGCNLSYLRLSGNHL 132
+P+ NL L + N L
Sbjct: 387 HLAEVPEL---PQNLKQLHVETNPL 408
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 8/105 (7%)
Query: 29 NLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQ 88
NL+ + +N+ + + L ++ NSLT E+P+ NLS+++ L+LS+N L+
Sbjct: 233 NLQIFNISANIFKYDF------LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS- 284
Query: 89 IPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLE 133
+P LG+ +N T+P + CNL +L + GN LE
Sbjct: 285 LPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 372 ISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAG 418
IS + K + L L ++ N+LT +P+ ++NL+ L LDLS N+L
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLTS 284
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 103/263 (39%), Gaps = 25/263 (9%)
Query: 46 DLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ-CLGNSTLETLDLR 104
DLP ++ L +++N L P++F S + L+ NS+S P+ C L+ L+L+
Sbjct: 22 DLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQ 81
Query: 105 MNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSG-PIPEY 163
N QT+ NL+ L L N + N L LD+ +N LS +
Sbjct: 82 HNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTG 141
Query: 164 LGNSTSLSFLNVRNN--SLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLN 221
+ L +N +L E LGNS+L LD+ N P F L +L
Sbjct: 142 VQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALL 201
Query: 222 LNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGD 281
LN +L L L C L + N L+L +N+
Sbjct: 202 LNNAQLNPHLTEKL--CWELSNTSIQN-------------------LSLANNQLLATSES 240
Query: 282 TKTRVPFPKLRIIDLSYNRFTGV 304
T + + + L +DLSYN V
Sbjct: 241 TFSGLKWTNLTQLDLSYNNLHDV 263
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 93/405 (22%), Positives = 155/405 (38%), Gaps = 54/405 (13%)
Query: 47 LPPHMVELL-------------ISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL 93
L PH+ E L ++NN L S+F S +++ NL+ LS +
Sbjct: 207 LNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTF---SGLKWTNLTQLDLSYNNLHDV 263
Query: 94 GNST------LETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLP----PSLIN- 142
GN + L L L NN Q P+++ NL YL L + + P++ +
Sbjct: 264 GNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDF 323
Query: 143 ----CVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRN-----NSLSGPIPECLGNSTL 193
L +L++ +NN+ SL +L++ +L+ L +S L
Sbjct: 324 SFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPL 383
Query: 194 EILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLP-PSLVNCRHLEVIDVGNNQIN 252
L++ N S TF+ L L+L N +E L R++ I + N+
Sbjct: 384 LTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYL 443
Query: 253 ETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNG 312
+ ++P LQ L LR + P L I+DLS N +
Sbjct: 444 QLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANI-------- 495
Query: 313 FKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNN---IQMERILTTFATIDLSSNRFQ 369
+ ++ G +N + L++ + L + N + + L+ ++L SN
Sbjct: 496 NEDLLEGLEN------LEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGLD 549
Query: 370 GEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 414
V L LKS+N+ NNL P + T L SL+L N
Sbjct: 550 EIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKN 594
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 67/149 (44%), Gaps = 11/149 (7%)
Query: 66 PSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLRMNNFQGTI-------PQTYA 117
PS F L ++ L+LSNN+++ L G LE LD + NN P +
Sbjct: 473 PSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFL 532
Query: 118 KG-CNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVR 176
KG +L L L N L+ N +L +++G NNL+ P + TSL LN++
Sbjct: 533 KGLSHLHILNLESNGLDEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQ 592
Query: 177 NNSLSGPIPECLG--NSTLEILDMRMNKF 203
N ++ + G L LDMR N F
Sbjct: 593 KNLITSVEKDVFGPPFQNLNSLDMRFNPF 621
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 20/183 (10%)
Query: 244 IDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYN--RF 301
+ N+ I E++ ++V+P + + N ++ P +PF + +DLS+N R
Sbjct: 13 LAAANSSIPESWEPCVEVVPNITYQCMELNFYKIP-----DNLPFST-KNLDLSFNPLRH 66
Query: 302 TGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESIS-LTMKGNNIQMERILTTFAT 360
G + F + D + E+ + Y +S L + GN IQ L F+
Sbjct: 67 LGSYSFF---SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSG 122
Query: 361 IDLSSNRFQGEISQV------LGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSS 413
+ E + +G L +LK LN++HN + +P NLT LE LDLSS
Sbjct: 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182
Query: 414 NKL 416
NK+
Sbjct: 183 NKI 185
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 83/207 (40%), Gaps = 28/207 (13%)
Query: 97 TLETLDLRMN--NFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNN 154
+LE LDL N +F+G Q+ +L YL LS N + + + + +L LD ++
Sbjct: 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHS 430
Query: 155 NLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKS 214
NL + E+ FL++RN L LD+ + F
Sbjct: 431 NLK-QMSEFS------VFLSLRN---------------LIYLDISHTHTRVAFNGIFNGL 468
Query: 215 CVLVSLNLNGNRL-EGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSN 273
L L + GN E LP R+L +D+ Q+ + P + L LQVL + N
Sbjct: 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
Query: 274 RFRGPIGDTKTRVPFPKLRIIDLSYNR 300
F DT L+++D S N
Sbjct: 529 NFFSL--DTFPYKCLNSLQVLDYSLNH 553
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 10/164 (6%)
Query: 3 DIGVHTLYFLDLSRNFLT-----SIDHLPWKNLEYLTLDSN-LLQGSLPDLPPHMVELLI 56
++ + +L FLDLSRN L+ S +L+YL L N ++ S L +E L
Sbjct: 367 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLD 426
Query: 57 SNNSLTGEIP--SSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLRMNNFQGT-I 112
+S ++ S F +L ++ YL++S+ G S+LE L + N+FQ +
Sbjct: 427 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 486
Query: 113 PQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNL 156
P + + NL++L LS LE P + + L L++ +NN
Sbjct: 487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 84/234 (35%), Gaps = 66/234 (28%)
Query: 239 RHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSY 298
+HLE+++ Q FP L L+ LT SN+ G+ + V P L +DLS
Sbjct: 331 QHLELVNCKFGQ----FPTL--KLKSLKRLTFTSNK----GGNAFSEVDLPSLEFLDLSR 380
Query: 299 NRFT----------GVLPIWYLN--------------GFKAMMHGD------DNSTEVNY 328
N + G + + YL+ G + + H D +E +
Sbjct: 381 NGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 440
Query: 329 MRSLNYSYYESIS--------------------LTMKGNNIQMERI------LTTFATID 362
SL Y IS L M GN+ Q + L +D
Sbjct: 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 500
Query: 363 LSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKL 416
LS + + L+SL+ LN+SHNN + L L+ LD S N +
Sbjct: 501 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 10/110 (9%)
Query: 29 NLEYLTLDSNLLQGS-LPDLPPHMVELL---ISNNSLTGEIPSSFCNLSSIQYLNLSNN- 83
+LE L + N Q + LPD+ + L +S L P++F +LSS+Q LN+S+N
Sbjct: 470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529
Query: 84 --SLSGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKG-CNLSYLRLSGN 130
SL +CL ++L+ LD +N+ + Q +L++L L+ N
Sbjct: 530 FFSLDTFPYKCL--NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 15/171 (8%)
Query: 251 INETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYL 310
I + FP D E T+++N + + D T+ + I + + V I YL
Sbjct: 9 IKQIFPD--DAFAE----TIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYL 62
Query: 311 NGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQ-----MERILTTFATIDLSS 365
+ + G + +++ ++ L Y L + GN +Q + LT + L
Sbjct: 63 PNVRYLALGGNKLHDISALKELTNLTY----LILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 366 NRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKL 416
N+ Q V KL +L LN++HN L LT L LDLS N+L
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 11 FLDLSRNFLTSIDHLP-WKNLEYLTLDSNLLQGSLP----DLPPHMVELLISNNSLTGEI 65
+L L N L I L NL YL L N LQ SLP D ++ EL++ N L
Sbjct: 67 YLALGGNKLHDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 66 PSSFCNLSSIQYLNLSNNSLSGQIPQCLGN--STLETLDLRMNNFQGTIPQTYAKGCNLS 123
F L+++ YLNL++N L +P+ + + + L LDL N Q + K L
Sbjct: 126 DGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184
Query: 124 YLRLSGNHLE 133
LRL N L+
Sbjct: 185 DLRLYQNQLK 194
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 355 LTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 414
LT ++L+ N+ Q V KL +L L++S+N L LT+L+ L L N
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 415 KL 416
+L
Sbjct: 192 QL 193
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 140/325 (43%), Gaps = 46/325 (14%)
Query: 67 SSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLR 126
++F + +Q L+L+ L G G + L+ L L +N+F + A +L++L
Sbjct: 269 TTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLY 328
Query: 127 LSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPE 186
+ G N KLH L VG E LGN L L++ +N + +
Sbjct: 329 IRG------------NVKKLH-LGVG-------CLEKLGN---LQTLDLSHNDIEA--SD 363
Query: 187 C----LGN-STLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPS-LVNCRH 240
C L N S L+ L++ N+ G Q F + L L+L RL P S N
Sbjct: 364 CCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHF 423
Query: 241 LEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFR-GPIGDTKTRVPFPKLRIIDLSYN 299
L+V+++ ++ + H L LP L+ L L+ N F+ G I T L ++ LS
Sbjct: 424 LQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSS- 482
Query: 300 RFTGVLPI--WYLNGFKAMMHGD--DNSTEVNYMRSLNYSYYESISLTMKGNNI-----Q 350
G+L I + M H D NS + + SL S+ + I L + N+I +
Sbjct: 483 --CGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSL--SHLKGIYLNLAANSINIISPR 538
Query: 351 MERILTTFATIDLSSNRFQGEISQV 375
+ IL+ +TI+LS N S +
Sbjct: 539 LLPILSQQSTINLSHNPLDCTCSNI 563
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 13/170 (7%)
Query: 262 LPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLP--IWYLNGFKAMMHG 319
L E+ V +L R + T F +L+ +DL+ G LP + LN K ++
Sbjct: 248 LCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLS 306
Query: 320 DDNSTEVNYMRSLNYSYYESISLTMKGNNIQME------RILTTFATIDLSSNRFQGE-- 371
++ ++ + + N+ L ++GN ++ L T+DLS N +
Sbjct: 307 VNHFDQLCQISAANFPSL--THLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDC 364
Query: 372 ISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIP 421
S L L+ L++LN+SHN G + + +LE LDL+ +L P
Sbjct: 365 CSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAP 414
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 130/294 (44%), Gaps = 28/294 (9%)
Query: 23 DHLPWKNLEYLTLDSNLLQGSLPDLPP-----HMVELLISNNSLTGEIPSSFCNLSSIQY 77
D P NL LT L + D+ P ++ L +S+N+++ S+ L+S+Q
Sbjct: 99 DITPLANLTNLT-GLTLFNNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ 155
Query: 78 LNLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPL 136
LN S+N ++ P L N +TLE LD+ N AK NL L + N +
Sbjct: 156 LNFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDIT 211
Query: 137 PPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEIL 196
P ++ L L + N L L + T+L+ L++ NN +S P G + L L
Sbjct: 212 PLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS-GLTKLTEL 266
Query: 197 DMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFP 256
+ N+ S P A L +L LN N+LE P S N ++L + + N I++ P
Sbjct: 267 KLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP 322
Query: 257 HWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYL 310
+ L +LQ L +N+ + D + + + +N+ + + P+ L
Sbjct: 323 --VSSLTKLQRLFFYNNK----VSDVSSLANLTNINWLSAGHNQISDLTPLANL 370
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 13/155 (8%)
Query: 266 QVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTE 325
QV TL+++R I L I+ S N+ T + P+ L ++ ++ +
Sbjct: 42 QVTTLQADRLG--IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 326 VNYMRSLNYSYYESISLTMKGN---NIQMERILTTFATIDLSSNRFQGEISQVLGKLNSL 382
+ + +L LT+ N +I + LT ++LSSN +IS + G L SL
Sbjct: 100 ITPLANL----TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI-SDISALSG-LTSL 153
Query: 383 KSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 417
+ LN S N +T P L NLT LE LD+SSNK++
Sbjct: 154 QQLNFSSNQVTDLKP--LANLTTLERLDISSNKVS 186
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 120/298 (40%), Gaps = 43/298 (14%)
Query: 12 LDLSRNFLTSIDHLPW---KNLEYLTLDSNLLQGSLPDLPPHMVELLISNNS--LTGEIP 66
LDLS F+ S++ + K+L+ L L N + + + L + N S L GE+
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330
Query: 67 SS-FCNLSSIQYLNLSNNSLSGQIPQCLGN-STLETLDLRMN-----NFQGTIPQTYAKG 119
SS F L + Y++L N ++ Q L+TLDLR N +F +IP + G
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSG 390
Query: 120 CNLSYL----------RLSGNHLEG-PLPPSLINCVKLHFLDVGNNNLS---GPIPEYLG 165
L L LS N LE + L+ L L + N S G
Sbjct: 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450
Query: 166 NSTSLSFLNVRNNSLSGPIPECL----GNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLN 221
S FL L+ C G S L++L + N + P F+ L L+
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510
Query: 222 LNGNRL----EGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRF 275
LN NRL LP + LE++D+ NQ+ P DV L VL + N+F
Sbjct: 511 LNSNRLTVLSHNDLPAN------LEILDISRNQLLAPNP---DVFVSLSVLDITHNKF 559
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 82/353 (23%), Positives = 140/353 (39%), Gaps = 68/353 (19%)
Query: 73 SSIQYLNLSNN---SLSGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSG 129
SS+++L+LS+ SL+ ++ + L + L+ L+L N + + NL L LS
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKD--LKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323
Query: 130 NHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLG 189
N L + K+ ++D+ N+++ + L L++R+N+L+
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI------ 377
Query: 190 NSTLEILDMRMNKFSGSLPQTFAKSCVLVSL---NLNGNRLEGPLPPSLVNCRHLEVIDV 246
F S+P F LV+L NL N + ++ LE +D+
Sbjct: 378 ------------HFIPSIPDIFLSGNKLVTLPKINLTANLIH-------LSENRLENLDI 418
Query: 247 GNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLP 306
++L +P LQ+L L NRF GD +T P L + L N
Sbjct: 419 ---------LYFLLRVPHLQILILNQNRFSSCSGD-QTPSENPSLEQLFLGENMLQLAWE 468
Query: 307 ---IWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDL 363
W + F+ + H NY+ SL + ++ ++G ++ R LT + DL
Sbjct: 469 TELCW--DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT-ALRGLSLNSNR-LTVLSHNDL 524
Query: 364 SSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKL 416
+N L+ L+IS N L P L LD++ NK
Sbjct: 525 PAN---------------LEILDISRNQLLAPNPDV---FVSLSVLDITHNKF 559
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 101/254 (39%), Gaps = 31/254 (12%)
Query: 179 SLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNC 238
SL+ + E L + L++L++ NK + + F L LNL+ N L +
Sbjct: 280 SLNSRVFETLKD--LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337
Query: 239 RHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSN-----RFRGPIGDT----KTRVPFP 289
+ ID+ N I L +LQ L LR N F I D V P
Sbjct: 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLP 397
Query: 290 KL----RIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMK 345
K+ +I LS NR + +++L + + LN + + S S
Sbjct: 398 KINLTANLIHLSENRLENLDILYFLLRVPHLQ-----------ILILNQNRFSSCSGDQT 446
Query: 346 -GNNIQMERILTTFATIDLSSNRFQGEIS-QVLGKLNSLKSLNISHNNLTGGIPSSLRNL 403
N +E++ + L+ ++ E+ V L+ L+ L ++HN L P +L
Sbjct: 447 PSENPSLEQLFLGENMLQLA---WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL 503
Query: 404 TELESLDLSSNKLA 417
T L L L+SN+L
Sbjct: 504 TALRGLSLNSNRLT 517
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 353 RILTTFATIDLSSNRFQG-EISQVLGKLNSLKSLNISHNNLTGGIPSSLRNL--TELESL 409
R L +DLS N+ + + GKLNSLKS++ S N + L L L
Sbjct: 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179
Query: 410 DLSSNKLAGRI 420
L++N L R+
Sbjct: 180 SLAANSLYSRV 190
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 8/160 (5%)
Query: 46 DLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS---GQIPQCLGNSTLETLD 102
++P +L + +N L+ +F L+ ++ L L++N L I + L N LETL
Sbjct: 34 NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN--LETLW 91
Query: 103 LRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCV-KLHFLDVGNNNLSGPIP 161
+ N Q + + NL+ LRL N L+ LPP + + + KL +L +G N L
Sbjct: 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPK 150
Query: 162 EYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMN 201
TSL L + NN L +PE + E+ ++++
Sbjct: 151 GVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLD 189
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 355 LTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 414
LT + L N Q V KL SLK L + +N L + LTEL++L L +N
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191
Query: 415 KLAGRIP 421
+L R+P
Sbjct: 192 QLK-RVP 197
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 35/195 (17%)
Query: 12 LDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTG--EIPSSF 69
L++++N L S+ LP +LEYL N L +LP+LP + L + NN LT E+P
Sbjct: 85 LEITQNALISLPELP-ASLEYLDACDNRL-STLPELPASLKHLDVDNNQLTXLPELP--- 139
Query: 70 CNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLRMNN--FQGTIPQTYAKGCNLSYLRL 127
+ ++Y+N NN L+ +P+ ++LE L +R N F +P++ L L +
Sbjct: 140 ---ALLEYINADNNQLTX-LPEL--PTSLEVLSVRNNQLTFLPELPES------LEALDV 187
Query: 128 SGNHLEG-PLPPSLINCVKLH-------FLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNS 179
S N LE P P V+ H F N ++ IPE + + + + +N
Sbjct: 188 STNLLESLPAVP-----VRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNP 241
Query: 180 LSGPIPECLGNSTLE 194
LS I E L T +
Sbjct: 242 LSSRIRESLSQQTAQ 256
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 376 LGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSSNKL 416
+G L +LK LN++HN + +P NLT LE LDLSSNK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 83/212 (39%), Gaps = 38/212 (17%)
Query: 97 TLETLDLRMN--NFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNN 154
+LE LDL N +F+G Q+ +L YL LS N + + + + +L LD ++
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHS 406
Query: 155 NLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGN------STLEILDMRMNKFSGSLP 208
NL + E+ S LS N+ +S N S+LE+L M N F
Sbjct: 407 NLK-QMSEF---SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ---- 458
Query: 209 QTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVL 268
E LP R+L +D+ Q+ + P + L LQVL
Sbjct: 459 -------------------ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 269 TLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNR 300
+ N F DT L+++D S N
Sbjct: 500 NMSHNNFFSL--DTFPYKCLNSLQVLDYSLNH 529
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 10/164 (6%)
Query: 3 DIGVHTLYFLDLSRNFLT-----SIDHLPWKNLEYLTLDSN-LLQGSLPDLPPHMVELLI 56
++ + +L FLDLSRN L+ S +L+YL L N ++ S L +E L
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 402
Query: 57 SNNSLTGEIP--SSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLRMNNFQGT-I 112
+S ++ S F +L ++ YL++S+ G S+LE L + N+FQ +
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
Query: 113 PQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNL 156
P + + NL++L LS LE P + + L L++ +NN
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 10/109 (9%)
Query: 30 LEYLTLDSNLLQGS-LPDLPPHMVELL---ISNNSLTGEIPSSFCNLSSIQYLNLSNN-- 83
LE L + N Q + LPD+ + L +S L P++F +LSS+Q LN+S+N
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Query: 84 -SLSGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKG-CNLSYLRLSGN 130
SL +CL ++L+ LD +N+ + Q +L++L L+ N
Sbjct: 507 FSLDTFPYKCL--NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 83/234 (35%), Gaps = 66/234 (28%)
Query: 239 RHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSY 298
+HLE+++ Q FP L L+ LT SN+ G+ + V P L +DLS
Sbjct: 307 QHLELVNCKFGQ----FPTL--KLKSLKRLTFTSNK----GGNAFSEVDLPSLEFLDLSR 356
Query: 299 NRFT----------GVLPIWYLN--------------GFKAMMHGD------DNSTEVNY 328
N + G + YL+ G + + H D +E +
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416
Query: 329 MRSLNYSYYESIS--------------------LTMKGNNIQMERI------LTTFATID 362
SL Y IS L M GN+ Q + L +D
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476
Query: 363 LSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKL 416
LS + + L+SL+ LN+SHNN + L L+ LD S N +
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 376 LGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSSNKL 416
+G L +LK LN++HN + +P NLT LE LDLSSNK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 376 LGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSSNKL 416
+G L +LK LN++HN + +P NLT LE LDLSSNK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 376 LGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSSNKL 416
+G L +LK LN++HN + +P NLT LE LDLSSNK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 376 LGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSSNKL 416
+G L +LK LN++HN + +P NLT LE LDLSSNK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 376 LGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSSNKL 416
+G L +LK LN++HN + +P NLT LE LDLSSNK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 376 LGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSSNKL 416
+G L +LK LN++HN + +P NLT LE LDLSSNK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 86/215 (40%), Gaps = 41/215 (19%)
Query: 97 TLETLDLRMN--NFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNN 154
+LE LDL N +F+G Q+ +L YL LS N + + + + +L LD ++
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHS 406
Query: 155 NLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKS 214
NL + E+ FL++RN L LD+ + F
Sbjct: 407 NLK-QMSEFS------VFLSLRN---------------LIYLDISHTHTRVAFNGIFNGL 444
Query: 215 CVLVSLNLNGNRL-EGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSN 273
L L + GN E LP R+L +D+ Q+ + P + L LQVL + SN
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504
Query: 274 RFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIW 308
+ + VP D ++R T + IW
Sbjct: 505 QLKS--------VP-------DGIFDRLTSLQKIW 524
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 11/170 (6%)
Query: 3 DIGVHTLYFLDLSRNFLT-----SIDHLPWKNLEYLTLDSN-LLQGSLPDLPPHMVELLI 56
++ + +L FLDLSRN L+ S +L+YL L N ++ S L +E L
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 402
Query: 57 SNNSLTGEIP--SSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLRMNNFQGT-I 112
+S ++ S F +L ++ YL++S+ G S+LE L + N+FQ +
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
Query: 113 PQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPE 162
P + + NL++L LS LE P + + L L++ +N L +P+
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPD 511
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 128/313 (40%), Gaps = 42/313 (13%)
Query: 68 SFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRL 127
+F S +Q L+L+ LS +G STL+ L L N F+ + + +L++L +
Sbjct: 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332
Query: 128 SGNHLEGPL-PPSLINCVKLHFLDVGNNNL--SGPIPEYLGNSTSLSFLNVRNNS----L 180
GN L L N L LD+ ++++ S L N + L LN+ N
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392
Query: 181 SGPIPECLGNSTLEILDMRMNKFSGSLPQT-FAKSCVLVSLNLNGNRLEGPLPPSLVNCR 239
+ EC LE+LD+ + Q+ F +L LNL+ +
Sbjct: 393 TEAFKEC---PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-------------- 435
Query: 240 HLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRF-RGPIGDTKTRVPFPKLRIIDLSY 298
++D+ + Q+ D LP LQ L L+ N F +G I T + +L I+ LS+
Sbjct: 436 ---LLDISSEQL-------FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485
Query: 299 NRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMER----- 353
+ + + K M H D + + S+ + I L + N+I +
Sbjct: 486 CDLSSIDQHAF-TSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLP 544
Query: 354 ILTTFATIDLSSN 366
IL+ TI+L N
Sbjct: 545 ILSQQRTINLRQN 557
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 83/356 (23%), Positives = 146/356 (41%), Gaps = 35/356 (9%)
Query: 71 NLSSIQYLNLSNNSLSG-QIPQCLGNSTLETLDLRMNNFQGTIPQ---TYAKGCNLSYLR 126
N +++ L L +N +S ++P+ L+ LD + N + + + NLS L
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS-LN 185
Query: 127 LSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLS-----FLNVRNNSLS 181
L+GN + G + P + L+ G I + L NST S F ++ + +S
Sbjct: 186 LNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244
Query: 182 GPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHL 241
+ E L ++E ++++ + F TF L L+L L LP LV L
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTL 303
Query: 242 EVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRF 301
+ + + N+ P L L+++ N R +G T LR +DLS++
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG-TGCLENLENLRELDLSHDDI 362
Query: 302 --TGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFA 359
+ + N +++++SLN SY E +SL + +
Sbjct: 363 ETSDCCNLQLRN--------------LSHLQSLNLSYNEPLSLKTEAF-----KECPQLE 403
Query: 360 TIDLSSNRFQGEISQV-LGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 414
+DL+ R + + +Q L+ LK LN+SH+ L L L+ L+L N
Sbjct: 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 34/229 (14%)
Query: 12 LDLSRNFLTSI---DHLPWKNLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTGEIPSS 68
LDLS N L+ I D P+ LE L L SN+L +L + L NN+ E+
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG 98
Query: 69 FCNLSSIQYLNLSNNSLS--------GQIPQCLGN--------------STLETLDLRMN 106
SI+ L+ +NN++S G+ L N S ++ LDL++N
Sbjct: 99 ----PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154
Query: 107 NFQGT-IPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLG 165
+ A L +L L N + + KL LD+ +N L+ PE+
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF--AKLKTLDLSSNKLAFMGPEF-Q 211
Query: 166 NSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKF-SGSLPQTFAK 213
++ ++++++RNN L + LE D+R N F G+L F+K
Sbjct: 212 SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 24/192 (12%)
Query: 121 NLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNS- 179
N+ L LSGN L L KL L++ +N L + L + ++L L++ NN
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92
Query: 180 ---LSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLV 236
L GP E L + I + ++ G A + + + +L+ EG
Sbjct: 93 QELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLD----EG------- 141
Query: 237 NCR-HLEVIDVGNNQINET-FPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRII 294
CR ++ +D+ N+I+ F L+ L L+ N I D K +V F KL+ +
Sbjct: 142 -CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN----FIYDVKGQVVFAKLKTL 196
Query: 295 DLSYNRFTGVLP 306
DLS N+ + P
Sbjct: 197 DLSSNKLAFMGP 208
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 49 PHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG-QIPQCLGNSTLETLDLRMNN 107
PH+V+L + N LTG P++F S IQ L L N + LG L+TL+L N
Sbjct: 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113
Query: 108 FQGTIPQTYAKGCNLSYLRLSGN 130
+P ++ +L+ L L+ N
Sbjct: 114 ISCVMPGSFEHLNSLTSLNLASN 136
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 46 DLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLRM 105
D+P H ELL+++N L +S++ L G++P L L+L+
Sbjct: 26 DIPLHTTELLLNDNELG----------------RISSDGLFGRLPH------LVKLELKR 63
Query: 106 NNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLG 165
N G P + ++ L+L N ++ + +L L++ +N +S +P
Sbjct: 64 NQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE 123
Query: 166 NSTSLSFLNVRNN 178
+ SL+ LN+ +N
Sbjct: 124 HLNSLTSLNLASN 136
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 361 IDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 414
+ L N+ + +++ L+ LK+LN+ N ++ +P S +L L SL+L+SN
Sbjct: 83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 217 LVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRF 275
LV L L N+L G P + H++ + +G N+I E L +L+ L L N+
Sbjct: 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 8/182 (4%)
Query: 5 GVHTLYFLDLSRNFLTSIDHL---PWKNLEYLTLDSNLLQGSLPDLPPHMVELLISNNSL 61
G+ LY L L N ++ I P + L+ L + N L P+LP +VEL I +N +
Sbjct: 76 GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRI 135
Query: 62 TGEIPSSFCNLSSIQYLNLSNNSL--SGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKG 119
F L ++ + + N L SG P L L + G IP+ +
Sbjct: 136 RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLPE- 193
Query: 120 CNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNS 179
L+ L L N ++ L+ KL+ L +G+N + L +L L++ NN
Sbjct: 194 -TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252
Query: 180 LS 181
LS
Sbjct: 253 LS 254
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 98/404 (24%), Positives = 164/404 (40%), Gaps = 63/404 (15%)
Query: 46 DLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ-CLGNSTLETLDLR 104
DLP ++ L +++N L ++F S + L++ N++S P+ C L+ L+L+
Sbjct: 22 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81
Query: 105 MNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYL 164
N +T+A NL+ L L N ++ + L LD+ +N LS
Sbjct: 82 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141
Query: 165 GNSTSLSFLNVRNNSLSGPIPECL---GNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLN 221
+L L + NN + E L NS+L+ L++ N+ P F L L
Sbjct: 142 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 201
Query: 222 LNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGD 281
LN + L PSL LE+ + ++ L+L +++
Sbjct: 202 LNNVQ----LGPSLTEKLCLELANTS-----------------IRNLSLSNSQLSTTSNT 240
Query: 282 TKTRVPFPKLRIIDLSYNRFTGV----------LPIWYL------NGFKAMMHGDDNSTE 325
T + + L ++DLSYN V L ++L + F +HG N
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300
Query: 326 VNYMRSLNYSYYESISLTM--KGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLK 383
+N RS +SISL K ++ + L +++ N G S + L +LK
Sbjct: 301 LNLKRSFT---KQSISLASLPKIDDFSFQW-LKCLEHLNMEDNDIPGIKSNMFTGLINLK 356
Query: 384 SLNISHNNLTGGIPSSLRNLTE----------LESLDLSSNKLA 417
L++S N+ T SLR LT L L+L+ NK++
Sbjct: 357 YLSLS-NSFT-----SLRTLTNETFVSLAHSPLHILNLTKNKIS 394
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 11/149 (7%)
Query: 66 PSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLRMNNFQGTI-------PQTYA 117
PS F L ++ L+LSNN+++ L G LE LDL+ NN P +
Sbjct: 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 532
Query: 118 KG-CNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVR 176
KG +L L L N + + +L +D+G NNL+ N SL LN++
Sbjct: 533 KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 592
Query: 177 NNSLSGPIPECLGNS--TLEILDMRMNKF 203
N ++ + G + L LDMR N F
Sbjct: 593 KNLITSVEKKVFGPAFRNLTELDMRFNPF 621
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 97/419 (23%), Positives = 159/419 (37%), Gaps = 84/419 (20%)
Query: 60 SLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQC---LGNSTLETLDLRMNNFQGTIPQTY 116
SLT ++ N +SI+ L+LSN+ LS L + L LDL NN ++
Sbjct: 210 SLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268
Query: 117 AKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVR 176
A L Y L N+++ SL + +L++ + + S SL+ L +
Sbjct: 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS--------FTKQSISLASL-PK 319
Query: 177 NNSLSGPIPECLGNSTLEILDM---RMNKFSG-------SLPQTFAKSCVLVS------- 219
+ S +CL + +E D+ + N F+G SL +F L +
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379
Query: 220 ------LNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINE--TFPHW------------- 258
LNL N++ + HLEV+D+G N+I + T W
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439
Query: 259 ----------LDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTG----- 303
++P LQ L LR + P L I+DLS N
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499
Query: 304 --------VLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNN---IQME 352
+L + + N + H + + +++ L S+ ++L G + +++
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGG-PIYFLKGL--SHLHILNLESNGFDEIPVEVF 556
Query: 353 RILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPS----SLRNLTELE 407
+ L IDL N + V SLKSLN+ N +T + RNLTEL+
Sbjct: 557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD 615
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 98/404 (24%), Positives = 164/404 (40%), Gaps = 63/404 (15%)
Query: 46 DLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ-CLGNSTLETLDLR 104
DLP ++ L +++N L ++F S + L++ N++S P+ C L+ L+L+
Sbjct: 32 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 91
Query: 105 MNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYL 164
N +T+A NL+ L L N ++ + L LD+ +N LS
Sbjct: 92 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 151
Query: 165 GNSTSLSFLNVRNNSLSGPIPECL---GNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLN 221
+L L + NN + E L NS+L+ L++ N+ P F L L
Sbjct: 152 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 211
Query: 222 LNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGD 281
LN + L PSL LE+ + ++ L+L +++
Sbjct: 212 LNNVQ----LGPSLTEKLCLELANTS-----------------IRNLSLSNSQLSTTSNT 250
Query: 282 TKTRVPFPKLRIIDLSYNRFTGV----------LPIWYL------NGFKAMMHGDDNSTE 325
T + + L ++DLSYN V L ++L + F +HG N
Sbjct: 251 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 310
Query: 326 VNYMRSLNYSYYESISLTM--KGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLK 383
+N RS +SISL K ++ + L +++ N G S + L +LK
Sbjct: 311 LNLKRSFT---KQSISLASLPKIDDFSFQW-LKCLEHLNMEDNDIPGIKSNMFTGLINLK 366
Query: 384 SLNISHNNLTGGIPSSLRNLTE----------LESLDLSSNKLA 417
L++S N+ T SLR LT L L+L+ NK++
Sbjct: 367 YLSLS-NSFT-----SLRTLTNETFVSLAHSPLHILNLTKNKIS 404
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 11/149 (7%)
Query: 66 PSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLRMNNFQGTI-------PQTYA 117
PS F L ++ L+LSNN+++ L G LE LDL+ NN P +
Sbjct: 483 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 542
Query: 118 KG-CNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVR 176
KG +L L L N + + +L +D+G NNL+ N SL LN++
Sbjct: 543 KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 602
Query: 177 NNSLSGPIPECLGNS--TLEILDMRMNKF 203
N ++ + G + L LDMR N F
Sbjct: 603 KNLITSVEKKVFGPAFRNLTELDMRFNPF 631
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 97/419 (23%), Positives = 159/419 (37%), Gaps = 84/419 (20%)
Query: 60 SLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQC---LGNSTLETLDLRMNNFQGTIPQTY 116
SLT ++ N +SI+ L+LSN+ LS L + L LDL NN ++
Sbjct: 220 SLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 278
Query: 117 AKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVR 176
A L Y L N+++ SL + +L++ + + S SL+ L +
Sbjct: 279 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS--------FTKQSISLASL-PK 329
Query: 177 NNSLSGPIPECLGNSTLEILDM---RMNKFSG-------SLPQTFAKSCVLVS------- 219
+ S +CL + +E D+ + N F+G SL +F L +
Sbjct: 330 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 389
Query: 220 ------LNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINE--TFPHW------------- 258
LNL N++ + HLEV+D+G N+I + T W
Sbjct: 390 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 449
Query: 259 ----------LDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTG----- 303
++P LQ L LR + P L I+DLS N
Sbjct: 450 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 509
Query: 304 --------VLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNN---IQME 352
+L + + N + H + + +++ L S+ ++L G + +++
Sbjct: 510 LEGLEKLEILDLQHNNLARLWKHANPGG-PIYFLKGL--SHLHILNLESNGFDEIPVEVF 566
Query: 353 RILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPS----SLRNLTELE 407
+ L IDL N + V SLKSLN+ N +T + RNLTEL+
Sbjct: 567 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD 625
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 98/404 (24%), Positives = 164/404 (40%), Gaps = 63/404 (15%)
Query: 46 DLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ-CLGNSTLETLDLR 104
DLP ++ L +++N L ++F S + L++ N++S P+ C L+ L+L+
Sbjct: 27 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 86
Query: 105 MNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYL 164
N +T+A NL+ L L N ++ + L LD+ +N LS
Sbjct: 87 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 146
Query: 165 GNSTSLSFLNVRNNSLSGPIPECL---GNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLN 221
+L L + NN + E L NS+L+ L++ N+ P F L L
Sbjct: 147 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 206
Query: 222 LNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGD 281
LN + L PSL LE+ + ++ L+L +++
Sbjct: 207 LNNVQ----LGPSLTEKLCLELANTS-----------------IRNLSLSNSQLSTTSNT 245
Query: 282 TKTRVPFPKLRIIDLSYNRFTGV----------LPIWYL------NGFKAMMHGDDNSTE 325
T + + L ++DLSYN V L ++L + F +HG N
Sbjct: 246 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 305
Query: 326 VNYMRSLNYSYYESISLTM--KGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLK 383
+N RS +SISL K ++ + L +++ N G S + L +LK
Sbjct: 306 LNLKRSFT---KQSISLASLPKIDDFSFQW-LKCLEHLNMEDNDIPGIKSNMFTGLINLK 361
Query: 384 SLNISHNNLTGGIPSSLRNLTE----------LESLDLSSNKLA 417
L++S N+ T SLR LT L L+L+ NK++
Sbjct: 362 YLSLS-NSFT-----SLRTLTNETFVSLAHSPLHILNLTKNKIS 399
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 11/149 (7%)
Query: 66 PSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLRMNNFQGTI-------PQTYA 117
PS F L ++ L+LSNN+++ L G LE LDL+ NN P +
Sbjct: 478 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 537
Query: 118 KG-CNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVR 176
KG +L L L N + + +L +D+G NNL+ N SL LN++
Sbjct: 538 KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 597
Query: 177 NNSLSGPIPECLGNS--TLEILDMRMNKF 203
N ++ + G + L LDMR N F
Sbjct: 598 KNLITSVEKKVFGPAFRNLTELDMRFNPF 626
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 97/419 (23%), Positives = 159/419 (37%), Gaps = 84/419 (20%)
Query: 60 SLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQC---LGNSTLETLDLRMNNFQGTIPQTY 116
SLT ++ N +SI+ L+LSN+ LS L + L LDL NN ++
Sbjct: 215 SLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 273
Query: 117 AKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVR 176
A L Y L N+++ SL + +L++ + + S SL+ L +
Sbjct: 274 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS--------FTKQSISLASL-PK 324
Query: 177 NNSLSGPIPECLGNSTLEILDM---RMNKFSG-------SLPQTFAKSCVLVS------- 219
+ S +CL + +E D+ + N F+G SL +F L +
Sbjct: 325 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 384
Query: 220 ------LNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINE--TFPHW------------- 258
LNL N++ + HLEV+D+G N+I + T W
Sbjct: 385 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 444
Query: 259 ----------LDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTG----- 303
++P LQ L LR + P L I+DLS N
Sbjct: 445 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 504
Query: 304 --------VLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNN---IQME 352
+L + + N + H + + +++ L S+ ++L G + +++
Sbjct: 505 LEGLEKLEILDLQHNNLARLWKHANPGG-PIYFLKGL--SHLHILNLESNGFDEIPVEVF 561
Query: 353 RILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPS----SLRNLTELE 407
+ L IDL N + V SLKSLN+ N +T + RNLTEL+
Sbjct: 562 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD 620
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 13/155 (8%)
Query: 266 QVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTE 325
QV TL+++R I L I+ S N+ T + P+ L ++ ++ +
Sbjct: 42 QVTTLQADRLG--IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 326 VNYMRSLNYSYYESISLTMKGN---NIQMERILTTFATIDLSSNRFQGEISQVLGKLNSL 382
+ + +L LT+ N +I + LT ++LSSN +IS + G L SL
Sbjct: 100 ITPLANL----TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI-SDISALSG-LTSL 153
Query: 383 KSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 417
+ L+ S N +T P L NLT LE LD+SSNK++
Sbjct: 154 QQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS 186
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 13/155 (8%)
Query: 266 QVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTE 325
QV TL+++R I L I+ S N+ T + P+ L ++ ++ +
Sbjct: 42 QVTTLQADRLG--IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 326 VNYMRSLNYSYYESISLTMKGN---NIQMERILTTFATIDLSSNRFQGEISQVLGKLNSL 382
+ + +L LT+ N +I + LT ++LSSN +IS + G L SL
Sbjct: 100 ITPLANL----TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI-SDISALSG-LTSL 153
Query: 383 KSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 417
+ L+ S N +T P L NLT LE LD+SSNK++
Sbjct: 154 QQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS 186
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 110/276 (39%), Gaps = 38/276 (13%)
Query: 28 KNLEYLTLDSNLLQGSLPDLPPH--MVELLISNNSLTGEIPSSFCNLSS-IQYLNLSNNS 84
K L L N L+G LP + L ++ N +T EIP++FC + ++ L+ ++N
Sbjct: 330 KKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK 388
Query: 85 LSGQIPQCLGN---STLETLDLRMN--------NFQGTIPQTYAKGCNLSYLRLSGNHLE 133
L IP S +D N NF P + KG N+S + LS N +
Sbjct: 389 LK-YIPNIFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPF-KGINVSSINLSNNQIS 446
Query: 134 G--------PLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIP 185
P S IN ++ N+L E N+ L+ +++R N L+ +
Sbjct: 447 KFPKELFSTGSPLSSINLXGNXLTEIPKNSLKDE-NENFKNTYLLTSIDLRFNKLT-KLS 504
Query: 186 ECLGNSTLEIL---DMRMNKFSGSLPQTFAKSC-----VLVSLNLNGNRLEGPLPPSLVN 237
+ +TL L D+ N FS Q S + + GNR P +
Sbjct: 505 DDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564
Query: 238 CRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSN 273
C L + +G+N I + + P + VL ++ N
Sbjct: 565 CPSLTQLQIGSNDIRKVNEK---ITPNISVLDIKDN 597
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 69/171 (40%), Gaps = 15/171 (8%)
Query: 251 INETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYL 310
I + FP D E T+++N + + D T+ + I + + V I YL
Sbjct: 9 IKQIFPD--DAFAE----TIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYL 62
Query: 311 NGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQ-----MERILTTFATIDLSS 365
+ + G + +++ ++ L Y L + GN +Q + LT + L
Sbjct: 63 PNVRYLALGGNKLHDISALKELTNLTY----LILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 366 NRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKL 416
N+ Q V KL +L L + HN L LT L LDL +N+L
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQL 169
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 103/247 (41%), Gaps = 54/247 (21%)
Query: 66 PSSFCNLSSIQYLNLSNNSLSGQIPQCLGNST--LETLDLRMNNFQGTIPQTYAKGCNLS 123
P F N+ + L L N LS +P+ + ++T L TL + NN + T+ +L
Sbjct: 110 PHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168
Query: 124 YLRLSGN---HLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSL 180
L+LS N H++ L PSL + N+S + L ++ L+ +NS+
Sbjct: 169 NLQLSSNRLTHVDLSLIPSLFHA-----------NVSYNLLSTLAIPIAVEELDASHNSI 217
Query: 181 S---GPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVN 237
+ GP+ N L IL ++ N + + LV ++L+ N LE + V
Sbjct: 218 NVVRGPV-----NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 270
Query: 238 CRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLS 297
+ LE + + NN++ + N + PI P L+++DLS
Sbjct: 271 MQRLERLYISNNRL------------------VALNLYGQPI---------PTLKVLDLS 303
Query: 298 YNRFTGV 304
+N V
Sbjct: 304 HNHLLHV 310
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 34/229 (14%)
Query: 12 LDLSRNFLTSI---DHLPWKNLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTGEIPSS 68
LDLS N L+ I D P+ LE L L SN+L +L + L NN+ E+
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG 98
Query: 69 FCNLSSIQYLNLSNNSLS--------GQIPQCLGN--------------STLETLDLRMN 106
SI+ L+ +NN++S G+ L N S ++ LDL++N
Sbjct: 99 ----PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154
Query: 107 NFQGT-IPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLG 165
+ A L +L L N + + KL LD+ +N L+ PE+
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF--AKLKTLDLSSNKLAFMGPEF-Q 211
Query: 166 NSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFS-GSLPQTFAK 213
++ ++++++RNN L + LE D+R N F G+L F+K
Sbjct: 212 SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 24/192 (12%)
Query: 121 NLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNS- 179
N+ L LSGN L L KL L++ +N L + L + ++L L++ NN
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92
Query: 180 ---LSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLV 236
L GP E L + I + ++ G A + + + +L+ EG
Sbjct: 93 QELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLD----EG------- 141
Query: 237 NCR-HLEVIDVGNNQINET-FPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRII 294
CR ++ +D+ N+I+ F L+ L L+ N I D K +V F KL+ +
Sbjct: 142 -CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN----FIYDVKGQVVFAKLKTL 196
Query: 295 DLSYNRFTGVLP 306
DLS N+ + P
Sbjct: 197 DLSSNKLAFMGP 208
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 112/278 (40%), Gaps = 46/278 (16%)
Query: 184 IPECLGNSTLEILDMRMN-------KFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLV 236
+PE L++LD + N K + SL Q +SLN NGN ++G P + +
Sbjct: 145 LPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQATN-----LSLNFNGNDIKGIEPGAFI 199
Query: 237 NCRHLEVIDVGNN----------QINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRV 286
+ + + + G + Q + WL + L S F G + +
Sbjct: 200 S-KIFQSLKFGGSLNLFIIFKGLQNSTLQSLWLGTFEDTDDQYLTSATFEGLCDMSVESI 258
Query: 287 PFPKLRIIDLS---YNRFTGV----LPIWYLNGFKAMMHGDD-------NSTEVNYMRSL 332
K R DLS + FT V L +LNG + + G + N+ + + +
Sbjct: 259 NLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQI 318
Query: 333 NYSYYESI-SLTMKGNNIQME------RILTTFATIDLSSNRFQGE--ISQVLGKLNSLK 383
N + + S+ L +KGN +++ L +DLS + + + L L L+
Sbjct: 319 NAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQ 378
Query: 384 SLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIP 421
LN+S+N G + + +LE LD++ L + P
Sbjct: 379 YLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAP 416
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 123/290 (42%), Gaps = 29/290 (10%)
Query: 67 SSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLR 126
S+F + +Q L+L+ L+G G ++L+ L L N+F A +L L
Sbjct: 271 STFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLY 330
Query: 127 LSGNHLEGPLPPSLINCVK-LHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIP 185
+ GN + L + ++ L LD+ ++++ + +L N+R+
Sbjct: 331 IKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEA------SDCCNLQLKNLRH-------- 376
Query: 186 ECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPS-LVNCRHLEVI 244
L+ L++ N+ G Q F + L L++ L P S N L V+
Sbjct: 377 -------LQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 245 DVGNNQINETFPHWLDVLPELQVLTLRSNRFR-GPIGDTKTRVPFPKLRIIDLSYNRFTG 303
++ + ++ + H L L +L+ L L+ N F+ G I T L I+ LS
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLS 489
Query: 304 VLPIWYLNGFKAMMHGD--DNSTEVNYMRSLNYSYYESISLTMKGNNIQM 351
+ + +G + + H D NS + M +L S+ + + L M NNI++
Sbjct: 490 IDQQAF-HGLRNVNHLDLSHNSLTGDSMDAL--SHLKGLYLNMASNNIRI 536
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 89/414 (21%), Positives = 169/414 (40%), Gaps = 73/414 (17%)
Query: 71 NLSSIQYLNLSNNSLSG-QIPQCLGNSTLETLDLRMNNFQGTIPQ---TYAKGCNLSYLR 126
NL +++ L+L +N +S +P+ L+ LD + N + + + NLS L
Sbjct: 126 NLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQATNLS-LN 184
Query: 127 LSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLS-----FLNVRNNSLS 181
+GN ++G P + I+ + G+ NL I + L NST S F + + L+
Sbjct: 185 FNGNDIKGIEPGAFISKIFQSLKFGGSLNL-FIIFKGLQNSTLQSLWLGTFEDTDDQYLT 243
Query: 182 GPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHL 241
E L + ++E ++++ ++FS TF + L+L L G LP + L
Sbjct: 244 SATFEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSL 302
Query: 242 EVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYN-- 299
+ + + N ++ P L+ L ++ N + +G T+ L+ +DLS++
Sbjct: 303 KKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLG-TRCLEKLENLQKLDLSHSDI 361
Query: 300 --------RFTGVLPIWYLN------------GFK----------AMMHGDDNS-----T 324
+ + + YLN FK A H +
Sbjct: 362 EASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQ 421
Query: 325 EVNYMRSLNYSY--------------YESISLTMKGNNIQ--------MERILTTFATID 362
++ +R LN S+ + L ++GN+ Q + +++ + +
Sbjct: 422 NLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILI 481
Query: 363 LSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKL 416
LSS Q L ++ L++SHN+LTG +L +L L L+++SN +
Sbjct: 482 LSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNI 534
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 16/160 (10%)
Query: 6 VHTLYFLDLSRNFL-TSIDHL--PWKNLEYLTLDSNLLQG------SLPDLPPHMVELLI 56
+H L L+LS L TS HL ++L +L L N Q +L + + L++
Sbjct: 423 LHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILIL 482
Query: 57 SNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGTIPQTY 116
S+ +L +F L ++ +L+LS+NSL+G L + L++ NN + P
Sbjct: 483 SSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLYLNMASNNIRIIPPHLL 542
Query: 117 AKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNL 156
S + LS N L+ C +HF+ NL
Sbjct: 543 PALSQQSIINLSHNPLD-------CTCSNIHFITWYKENL 575
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 9 LYFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTGEIPSS 68
L L +S N LTS+ LP L+ L + N L SLP LP ++ L + N LT +P S
Sbjct: 223 LKELIVSGNRLTSLPVLP-SELKELMVSGNRLT-SLPMLPSGLLSLSVYRNQLT-RLPES 279
Query: 69 FCNLSSIQYLNLSNNSLSGQIPQCLGNST 97
+LSS +NL N LS + Q L T
Sbjct: 280 LIHLSSETTVNLEGNPLSERTLQALREIT 308
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 17 NFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTG--EIPSSFCNL 72
N LTS+ LP L L + N L SLP LPP ++EL I +N LT +PS C L
Sbjct: 71 NNLTSLPALP-PELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKL 126
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 348 NIQMERILTTFATIDLSSNRFQGEISQVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTEL 406
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 407 ESLDLSSNKLAGRIP 421
+ L L N+L P
Sbjct: 127 QELYLKGNELKTLPP 141
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 13/116 (11%)
Query: 202 KFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDV 261
+ G+LP VL +L+L+ N+L+ LP L V+DV N++ L
Sbjct: 71 QVDGTLP-------VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 262 LPELQVLTLRSNRFRG-PIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAM 316
L ELQ L L+ N + P G P PKL + L+ N+ T LP LNG + +
Sbjct: 123 LGELQELYLKGNELKTLPPG---LLTPTPKLEKLSLANNQLTE-LPAGLLNGLENL 174
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 192 TLEILDMRMNKFSGSLPQTFAKSC-VLVSLNLNGNRLEGPLPPSLVN-CRHLEVIDVGNN 249
L +LD+ N+ + SLP + L L L GN L+ LPP L+ LE + + NN
Sbjct: 101 ALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANN 158
Query: 250 QINETFPHWLDVLPELQVLTLRSN 273
Q+ E L+ L L L L+ N
Sbjct: 159 QLTELPAGLLNGLENLDTLLLQEN 182
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 348 NIQMERILTTFATIDLSSNRFQGEISQVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTEL 406
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 407 ESLDLSSNKLAGRIP 421
+ L L N+L P
Sbjct: 127 QELYLKGNELKTLPP 141
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 202 KFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDV 261
+ G+LP VL +L+L+ N+L+ LP L V+DV N++ L
Sbjct: 71 QVDGTLP-------VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 262 LPELQVLTLRSNRFRG-PIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFK 314
L ELQ L L+ N + P G P PKL + L+ N+ T LP LNG +
Sbjct: 123 LGELQELYLKGNELKTLPPG---LLTPTPKLEKLSLANNQLTE-LPAGLLNGLE 172
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 348 NIQMERILTTFATIDLSSNRFQGEISQVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTEL 406
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 407 ESLDLSSNKLAGRIP 421
+ L L N+L P
Sbjct: 127 QELYLKGNELKTLPP 141
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 13/116 (11%)
Query: 202 KFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDV 261
+ G+LP VL +L+L+ N+L+ LP L V+DV N++ L
Sbjct: 71 QVDGTLP-------VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 262 LPELQVLTLRSNRFRG-PIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAM 316
L ELQ L L+ N + P G P PKL + L+ N+ T LP LNG + +
Sbjct: 123 LGELQELYLKGNELKTLPPG---LLTPTPKLEKLSLANNQLTE-LPAGLLNGLENL 174
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 192 TLEILDMRMNKFSGSLPQTFAKSC-VLVSLNLNGNRLEGPLPPSLVN-CRHLEVIDVGNN 249
L +LD+ N+ + SLP + L L L GN L+ LPP L+ LE + + NN
Sbjct: 101 ALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANN 158
Query: 250 QINETFPHWLDVLPELQVLTLRSN 273
Q+ E L+ L L L L+ N
Sbjct: 159 QLTELPAGLLNGLENLDTLLLQEN 182
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 348 NIQMERILTTFATIDLSSNRFQGEISQVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTEL 406
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 407 ESLDLSSNKLAGRIP 421
+ L L N+L P
Sbjct: 127 QELYLKGNELKTLPP 141
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 202 KFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDV 261
+ G+LP VL +L+L+ N+L+ LP L V+DV N++ L
Sbjct: 71 QVDGTLP-------VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 262 LPELQVLTLRSNRFRG-PIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAM 316
L ELQ L L+ N + P G P PKL + L+ N T LP LNG + +
Sbjct: 123 LGELQELYLKGNELKTLPPG---LLTPTPKLEKLSLANNNLTE-LPAGLLNGLENL 174
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 348 NIQMERILTTFATIDLSSNRFQGEISQVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTEL 406
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL
Sbjct: 70 KLQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 127
Query: 407 ESLDLSSNKLAGRIP 421
+ L L N+L P
Sbjct: 128 QELYLKGNELKTLPP 142
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 202 KFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDV 261
+ G+LP VL +L+L+ N+L+ LP L V+DV N++ L
Sbjct: 72 QVDGTLP-------VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRG 123
Query: 262 LPELQVLTLRSNRFRG-PIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAM 316
L ELQ L L+ N + P G P PKL + L+ N T LP LNG + +
Sbjct: 124 LGELQELYLKGNELKTLPPG---LLTPTPKLEKLSLANNNLTE-LPAGLLNGLENL 175
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 98/229 (42%), Gaps = 35/229 (15%)
Query: 220 LNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFR-GP 278
L+L NR++ + HLE +++ N ++ P + L L+ L LRSNR + P
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96
Query: 279 IGDTKTRVPFPKLRIIDLSYNRFTGVLPIWY--LNGFKAMMHGDDNSTEVNY-----MRS 331
+G L +D+S N+ +L + L K++ GD++ +++ + S
Sbjct: 97 LG---VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153
Query: 332 LNYSYYESISLT---------MKGNNIQMERILTTFATIDLSSNRFQG----EISQ---- 374
L E +LT + G + R L A D S R EIS
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213
Query: 375 ------VLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 417
L LN L SL+I+H NLT ++R+L L L+LS N ++
Sbjct: 214 DTMTPNCLYGLN-LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 348 NIQMERILTTFATIDLSSNRFQGEISQVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTEL 406
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 407 ESLDLSSNKLAGRIP 421
+ L L N+L P
Sbjct: 127 QELYLKGNELKTLPP 141
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 202 KFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDV 261
+ G+LP VL +L+L+ N+L+ LP L V+DV N++ L
Sbjct: 71 QVDGTLP-------VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 262 LPELQVLTLRSNRFRG-PIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAM 316
L ELQ L L+ N + P G P PKL + L+ N T LP LNG + +
Sbjct: 123 LGELQELYLKGNELKTLPPG---LLTPTPKLEKLSLANNDLTE-LPAGLLNGLENL 174
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 348 NIQMERILTTFATIDLSSNRFQGEISQVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTEL 406
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 407 ESLDLSSNKLAGRIP 421
+ L L N+L P
Sbjct: 127 QELYLKGNELKTLPP 141
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 202 KFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDV 261
+ G+LP VL +L+L+ N+L+ LP L V+DV N++ L
Sbjct: 71 QVDGTLP-------VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 262 LPELQVLTLRSNRFRG-PIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAM 316
L ELQ L L+ N + P G P PKL + L+ N T LP LNG + +
Sbjct: 123 LGELQELYLKGNELKTLPPG---LLTPTPKLEKLSLANNNLTE-LPAGLLNGLENL 174
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 348 NIQMERILTTFATIDLSSNRFQGEISQVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTEL 406
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 407 ESLDLSSNKLAGRIP 421
+ L L N+L P
Sbjct: 127 QELYLKGNELKTLPP 141
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 202 KFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDV 261
+ G+LP VL +L+L+ N+L+ LP L V+DV N++ L
Sbjct: 71 QVDGTLP-------VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 262 LPELQVLTLRSNRFRG-PIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFK 314
L ELQ L L+ N + P G P PKL + L+ N+ T LP LNG +
Sbjct: 123 LGELQELYLKGNELKTLPPG---LLTPTPKLEKLSLANNQLTE-LPAGLLNGLE 172
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 97/234 (41%), Gaps = 35/234 (14%)
Query: 46 DLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN-STLETLDLR 104
DLPP L + NN +T F NL ++ L L NN +S P LE L L
Sbjct: 49 DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108
Query: 105 MNNFQGTIPQTYAKGCNLSYLRLSGNHL--------------------EGPLPPSLIN-- 142
N + +P+ K L LR+ N + PL S I
Sbjct: 109 KNQLK-ELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165
Query: 143 ----CVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECL-GNSTLEILD 197
KL ++ + + N++ IP+ G SL+ L++ N ++ L G + L L
Sbjct: 166 AFQGMKKLSYIRIADTNITT-IPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222
Query: 198 MRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQI 251
+ N S + A + L L+LN N+L +P L + ++++V+ + NN I
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNI 275
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 8 TLYFLDLSRNFLTSIDHLPWK---NLEYLTLDSNLLQ----GSLPDLPPHMVELLISNNS 60
+L L L N +T +D K NL L L N + GSL + P H+ EL ++NN
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP-HLRELHLNNNK 251
Query: 61 LTGEIPSSFCNLSSIQYLNLSNNSLSG 87
L ++P + IQ + L NN++S
Sbjct: 252 LV-KVPGGLADHKYIQVVYLHNNNISA 277
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 95/236 (40%), Gaps = 30/236 (12%)
Query: 197 DMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFP 256
D+ + K LP A L+L N++ N ++L + + NN+I++ P
Sbjct: 40 DLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP 93
Query: 257 HWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAM 316
L +L+ L L N+ + + ++P L+ + + N T V + NG M
Sbjct: 94 GAFAPLVKLERLYLSKNQLK----ELPEKMP-KTLQELRVHENEITKVRKSVF-NGLNQM 147
Query: 317 M-----------HGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSS 365
+ G +N M+ L+Y ++T + + + L
Sbjct: 148 IVVELGTNPLKSSGIENGA-FQGMKKLSYIRIADTNITTIPQGLP-----PSLTELHLDG 201
Query: 366 NRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIP 421
N+ + L LN+L L +S N+++ SL N L L L++NKL ++P
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP 256
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 27 WKNLEYLTL-DSNLLQGSLPD-LPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNS 84
K L Y+ + D+N+ ++P LPP + EL + N +T +S L+++ L LS NS
Sbjct: 170 MKKLSYIRIADTNIT--TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227
Query: 85 LSGQIPQCLGNSTLETLDLRMNN 107
+S L N T +L +NN
Sbjct: 228 ISAVDNGSLAN-TPHLRELHLNN 249
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 97/234 (41%), Gaps = 35/234 (14%)
Query: 46 DLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN-STLETLDLR 104
DLPP L + NN +T F NL ++ L L NN +S P LE L L
Sbjct: 49 DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108
Query: 105 MNNFQGTIPQTYAKGCNLSYLRLSGNHL--------------------EGPLPPSLIN-- 142
N + +P+ K L LR+ N + PL S I
Sbjct: 109 KNQLK-ELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165
Query: 143 ----CVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECL-GNSTLEILD 197
KL ++ + + N++ IP+ G SL+ L++ N ++ L G + L L
Sbjct: 166 AFQGMKKLSYIRIADTNITT-IPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222
Query: 198 MRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQI 251
+ N S + A + L L+LN N+L +P L + ++++V+ + NN I
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNI 275
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 8 TLYFLDLSRNFLTSIDHLPWK---NLEYLTLDSNLLQ----GSLPDLPPHMVELLISNNS 60
+L L L N +T +D K NL L L N + GSL + P H+ EL ++NN
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP-HLRELHLNNNK 251
Query: 61 LTGEIPSSFCNLSSIQYLNLSNNSLSG 87
L ++P + IQ + L NN++S
Sbjct: 252 LV-KVPGGLADHKYIQVVYLHNNNISA 277
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 95/236 (40%), Gaps = 30/236 (12%)
Query: 197 DMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFP 256
D+ + K LP A L+L N++ N ++L + + NN+I++ P
Sbjct: 40 DLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP 93
Query: 257 HWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAM 316
L +L+ L L N+ + + ++P L+ + + N T V + NG M
Sbjct: 94 GAFAPLVKLERLYLSKNQLK----ELPEKMP-KTLQELRVHENEITKVRKSVF-NGLNQM 147
Query: 317 M-----------HGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSS 365
+ G +N M+ L+Y ++T + + + L
Sbjct: 148 IVVELGTNPLKSSGIENGA-FQGMKKLSYIRIADTNITTIPQGLP-----PSLTELHLDG 201
Query: 366 NRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIP 421
N+ + L LN+L L +S N+++ SL N L L L++NKL ++P
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP 256
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 27 WKNLEYLTL-DSNLLQGSLPD-LPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNS 84
K L Y+ + D+N+ ++P LPP + EL + N +T +S L+++ L LS NS
Sbjct: 170 MKKLSYIRIADTNIT--TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227
Query: 85 LSGQIPQCLGNSTLETLDLRMNN 107
+S L N T +L +NN
Sbjct: 228 ISAVDNGSLAN-TPHLRELHLNN 249
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 101/247 (40%), Gaps = 54/247 (21%)
Query: 66 PSSFCNLSSIQYLNLSNNSLSGQIPQCLGNST--LETLDLRMNNFQGTIPQTYAKGCNLS 123
P F N+ + L L N LS +P+ + ++T L TL + NN + T+ +L
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174
Query: 124 YLRLSGN---HLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSL 180
L+LS N H++ L PSL + N+S + L ++ L+ +NS+
Sbjct: 175 NLQLSSNRLTHVDLSLIPSLFHA-----------NVSYNLLSTLAIPIAVEELDASHNSI 223
Query: 181 S---GPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVN 237
+ GP+ N L IL ++ N + + LV ++L+ N LE + V
Sbjct: 224 NVVRGPV-----NVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVK 276
Query: 238 CRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLS 297
+ LE + + NN+ L L L P P L+++DLS
Sbjct: 277 MQRLERLYISNNR--------------LVALNLYGQ-------------PIPTLKVLDLS 309
Query: 298 YNRFTGV 304
+N V
Sbjct: 310 HNHLLHV 316
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 348 NIQMERILTTFATIDLSSNRFQGEISQVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTEL 406
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 407 ESLDLSSNKLAGRIP 421
+ L L N+L P
Sbjct: 127 QELYLKGNELKTLPP 141
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 202 KFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDV 261
+ G+LP VL +L+L+ N+L+ LP L V+DV N++ L
Sbjct: 71 QVDGTLP-------VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 262 LPELQVLTLRSNRFRG-PIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAM 316
L ELQ L L+ N + P G P PKL + L+ N T LP LNG + +
Sbjct: 123 LGELQELYLKGNELKTLPPG---LLTPTPKLEKLSLANNNLTE-LPAGLLNGLENL 174
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 348 NIQMERILTTFATIDLSSNRFQGEISQVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTEL 406
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 407 ESLDLSSNKLAGRIP 421
+ L L N+L P
Sbjct: 127 QELYLKGNELKTLPP 141
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 202 KFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDV 261
+ G+LP VL +L+L+ N+L+ LP L V+DV N++ L
Sbjct: 71 QVDGTLP-------VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 262 LPELQVLTLRSNRFRG-PIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAM 316
L ELQ L L+ N + P G P PKL + L+ N T LP LNG + +
Sbjct: 123 LGELQELYLKGNELKTLPPG---LLTPTPKLEKLSLANNNLTE-LPAGLLNGLENL 174
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 325 EVNYMRSL-NYSYYESISLT---MKGNNIQ-----MERILTTFATIDLSSNRFQGEISQV 375
E N ++SL N + E SLT + GN +Q + LT+ ++LS+N+ Q + V
Sbjct: 36 ETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV 95
Query: 376 LGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKL 416
KL LK L ++ N L LT+L+ L L N+L
Sbjct: 96 FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 72/340 (21%), Positives = 124/340 (36%), Gaps = 81/340 (23%)
Query: 44 LPDLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLN---------LSNNSLSG------- 87
+P+LP H+ + +S NS+ +SF L +Q+L + NN+ G
Sbjct: 25 VPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL 84
Query: 88 -----QIPQCL-----GNSTLETLDLRMNNFQGTI--PQTYAKGCNLSYLRLSGNHLEGP 135
Q Q G + LE L L N G + + +L L L N+++
Sbjct: 85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144
Query: 136 LPPS-LINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGP--------IPE 186
P S +N + H LD+ N + E L N F +R +S++ +
Sbjct: 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204
Query: 187 C---LGNSTLEILDMRMNKFSGSLPQTFAKSCV--------------------------- 216
C N+++ LD+ N F S+ + F +
Sbjct: 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264
Query: 217 ------------LVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPE 264
+ + +L+ +++ L + LE + + N+IN+ + L
Sbjct: 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH 324
Query: 265 LQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGV 304
L L L N F G I D++ KL ++DLSYN +
Sbjct: 325 LLKLNLSQN-FLGSI-DSRMFENLDKLEVLDLSYNHIRAL 362
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 5 GVHTLYFLDLSRNFLTSIDHLPWKN---LEYLTLDSNLLQGSLPDLP----PHMVELLIS 57
G+ L L+LS+NFL SID ++N LE L L N ++ +L D P++ EL +
Sbjct: 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALD 379
Query: 58 NNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ 91
N L F L+S+Q + L N P+
Sbjct: 380 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 201 NKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLD 260
NK LP+ + + L L+GN+ +P L N +HL +ID+ NN+I+
Sbjct: 19 NKGLKVLPKGIPRD--VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFS 75
Query: 261 VLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMH 318
+ +L L L NR R +T LR++ L N + V+P N A+ H
Sbjct: 76 NMTQLLTLILSYNRLR--CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSH 130
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 83/198 (41%), Gaps = 33/198 (16%)
Query: 222 LNGNRLEGPLPPSLVN-CRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIG 280
++G R+ L PS ++ HL D NN + +T L EL+ L L+ N+ +
Sbjct: 309 VSGTRMVHMLCPSKISPFLHL---DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365
Query: 281 DTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESI 340
+ L+ +D+S N + D+ + ++ +SL +
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVS----------------YDEKKGDCSWTKSL-------L 402
Query: 341 SLTMKGNNIQMERILTTF----ATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGI 396
SL M +NI + I +DL SN+ + QV+ KL +L+ LN++ N L
Sbjct: 403 SLNM-SSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVP 460
Query: 397 PSSLRNLTELESLDLSSN 414
LT L+ + L +N
Sbjct: 461 DGIFDRLTSLQKIWLHTN 478
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 16/147 (10%)
Query: 10 YFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDL-------PPHMVELLISNNSLT 62
+ +D S+N L H+P K+L T N+ Q + +L + L+IS+N +
Sbjct: 3 FLVDRSKNGLI---HVP-KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ 58
Query: 63 GEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGT-IPQTYAKGCN 121
S F ++YL+LS+N L C L+ LDL N F I + +
Sbjct: 59 YLDISVFKFNQELEYLDLSHNKLVK--ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQ 116
Query: 122 LSYLRLSGNHLEGP--LPPSLINCVKL 146
L +L LS HLE LP + +N K+
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKV 143
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 80/367 (21%), Positives = 140/367 (38%), Gaps = 58/367 (15%)
Query: 78 LNLSNNSLSG-QIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPL 136
LN+S N +S L S L L + N Q + L YL LS N L
Sbjct: 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-- 83
Query: 137 PPSLINC---VKLHFLDVGNNNLSG-PIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNST 192
I+C V L LD+ N PI + GN + L FL + L +S
Sbjct: 84 ----ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-------SSV 132
Query: 193 LEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQIN 252
L I + ++K L +T+ + E P N L ++ N + +
Sbjct: 133 LPIAHLNISKVLLVLGETYGEK-------------EDPEGLQDFNTESLHIVFPTNKEFH 179
Query: 253 ETFPHWLDVLPELQV----LTLRSNR---FRGPIGDTKTRVPFPKLRI--IDLSYNRFTG 303
+ + L++ L N+ F + +T L + I+ ++N F
Sbjct: 180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR 239
Query: 304 VLP------IWYLNGFKAMMHGDDNSTEVNY----MRSLNYSYYESISLTMKGNNIQMER 353
+L +WY + + G + + +Y +++L S ++ +S
Sbjct: 240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKAL--SIHQVVSDVF---GFPQSY 294
Query: 354 ILTTFATIDLSSNRFQG-EISQVL--GKLNSLKSLNISHNNLTGGIPSSLRNLTELESLD 410
I F+ +++ + G + +L K++ L+ S+N LT + + +LTELE+L
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354
Query: 411 LSSNKLA 417
L N+L
Sbjct: 355 LQMNQLK 361
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 80/210 (38%), Gaps = 8/210 (3%)
Query: 96 STLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHL--EGPLPPSLINCVKLHFLDVGN 153
S+ L+L N Q + K L+ L LS N L +G S L +LD+
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87
Query: 154 NNLSGPIPEYLGNSTSLSFLNVRNNSLS--GPIPECLGNSTLEILDMRMNKFSGSLPQTF 211
N + +LG L L+ ++++L L L LD+ + F
Sbjct: 88 NGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146
Query: 212 AKSCVLVSLNLNGNRL-EGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTL 270
L L + GN E LP R+L +D+ Q+ + P + L LQVL +
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206
Query: 271 RSNRFRGPIGDTKTRVPFPKLRIIDLSYNR 300
N F DT L+++D S N
Sbjct: 207 SHNNFFSL--DTFPYKCLNSLQVLDYSLNH 234
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 80/200 (40%), Gaps = 41/200 (20%)
Query: 253 ETFPHWL-DVLPELQVLTLRSN--RFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWY 309
++ PH + D L +L L+L SN F+G +++ L+ +DLS+N GV+ +
Sbjct: 41 QSLPHGVFDKLTQLTKLSLSSNGLSFKGCC--SQSDFGTTSLKYLDLSFN---GVITMSS 95
Query: 310 -LNGFKAMMHGD------DNSTEVNYMRSLNYSYYESIS--------------------L 342
G + + H D +E + SL Y IS L
Sbjct: 96 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155
Query: 343 TMKGNNIQMERI------LTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGI 396
M GN+ Q + L +DLS + + L+SL+ LN+SHNN
Sbjct: 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215
Query: 397 PSSLRNLTELESLDLSSNKL 416
+ L L+ LD S N +
Sbjct: 216 TFPYKCLNSLQVLDYSLNHI 235
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 14/155 (9%)
Query: 266 QVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTE 325
QV TL+++R I L I+ S N+ T + P+ L ++ ++ +
Sbjct: 42 QVTTLQADRLG--IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 326 VNYMRSLNYSYYESISLTMKGN---NIQMERILTTFATIDLSSNRFQGEISQVLGKLNSL 382
+ + +L LT+ N +I + LT ++LSSN +IS + G L SL
Sbjct: 100 ITPLANL----TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI-SDISALSG-LTSL 153
Query: 383 KSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 417
+ LN N +T P L NLT LE LD+SSNK++
Sbjct: 154 QQLNFG-NQVTDLKP--LANLTTLERLDISSNKVS 185
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 14/155 (9%)
Query: 266 QVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTE 325
QV TL+++R I L I+ S N+ T + P+ L ++ ++ +
Sbjct: 42 QVTTLQADRLG--IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 326 VNYMRSLNYSYYESISLTMKGN---NIQMERILTTFATIDLSSNRFQGEISQVLGKLNSL 382
+ + +L LT+ N +I + LT ++LSSN +IS + G L SL
Sbjct: 100 ITPLANL----TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI-SDISALSG-LTSL 153
Query: 383 KSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 417
+ LN N +T P L NLT LE LD+SSNK++
Sbjct: 154 QQLNFG-NQVTDLKP--LANLTTLERLDISSNKVS 185
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 5 GVHTLYFLDLSRNFLTSIDHLP-WKNLEYLTLDSNLLQGSLPDLPP-----HMVELLISN 58
G+ L L+L+ N L I + KNL YLTL N ++ D+ P + L SN
Sbjct: 280 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFN----NISDISPVSSLTKLQRLFFSN 335
Query: 59 NSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIP 90
N ++ SS NL++I +L+ +N +S P
Sbjct: 336 NKVSD--VSSLANLTNINWLSAGHNQISDLTP 365
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 216 VLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRF 275
++ L+L+ NRL LPP+L R LEV+ +N + + LP LQ L L +NR
Sbjct: 464 LVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRL 520
Query: 276 RGPIGDTKTRVPFPKLRIIDLSYN 299
+ + V P+L +++L N
Sbjct: 521 QQSAA-IQPLVSCPRLVLLNLQGN 543
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 216 VLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRF 275
++ L+L+ NRL LPP+L R LEV+ +N + + LP LQ L L +NR
Sbjct: 464 LVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRL 520
Query: 276 RGPIGDTKTRVPFPKLRIIDLSYN 299
+ + V P+L +++L N
Sbjct: 521 QQSAA-IQPLVSCPRLVLLNLQGN 543
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 294 IDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESIS-LTMKGNNIQME 352
IDLS+N +L + + F + D + E+ + + +S L + GN IQ
Sbjct: 37 IDLSFNPL-KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF 95
Query: 353 RI-----LTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNL-TGGIPSSLRNLTEL 406
LT+ + + S +G+L +LK LN++HN + + +P+ NLT L
Sbjct: 96 SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 155
Query: 407 ESLDLSSN 414
+DLS N
Sbjct: 156 VHVDLSYN 163
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 341 SLTMKGNNIQMERILTTFAT------IDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTG 394
+L M GN+ + + FA +DLS + + V L+ L+ LN+SHNNL
Sbjct: 452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511
Query: 395 GIPSSLRNLTELESLDLSSNKL 416
S L L +LD S N++
Sbjct: 512 LDSSHYNQLYSLSTLDCSFNRI 533
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 341 SLTMKGNNIQMERILTTFAT------IDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTG 394
+L M GN+ + + FA +DLS + + V L+ L+ LN+SHNNL
Sbjct: 447 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 506
Query: 395 GIPSSLRNLTELESLDLSSNKL 416
S L L +LD S N++
Sbjct: 507 LDSSHYNQLYSLSTLDCSFNRI 528
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 294 IDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESIS-LTMKGNNIQME 352
IDLS+N +L + + F + D + E+ + + +S L + GN IQ
Sbjct: 32 IDLSFNPL-KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF 90
Query: 353 RI-----LTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNL-TGGIPSSLRNLTEL 406
LT+ + + S +G+L +LK LN++HN + + +P+ NLT L
Sbjct: 91 SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 150
Query: 407 ESLDLSSN 414
+DLS N
Sbjct: 151 VHVDLSYN 158
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 84/205 (40%), Gaps = 14/205 (6%)
Query: 220 LNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPI 279
LNL N ++ + + RHLE++ + N + + + LP L L L NR
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL--TT 97
Query: 280 GDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYES 339
T+ KLR + L N + P + N ++ D E+ + ++ + +E
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLRRLDLG--ELKRLEYISEAAFEG 154
Query: 340 ISLTMKGNNIQMERI--------LTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNN 391
+ + ++ N+ M + L ++LS NR L SL+ L + H
Sbjct: 155 L-VNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQ 213
Query: 392 LTGGIPSSLRNLTELESLDLSSNKL 416
+ ++ +L LE L+LS N L
Sbjct: 214 VATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 94/418 (22%), Positives = 147/418 (35%), Gaps = 98/418 (23%)
Query: 46 DLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSL-SGQIPQCLGNSTLETLDLR 104
DLPP L +S NS++ LS ++ L LS+N + S L N LE LD+
Sbjct: 49 DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108
Query: 105 MNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSG-PIPEY 163
N Q C ++ LR LD+ N+ P+ +
Sbjct: 109 HNRLQNI------SCCPMASLR---------------------HLDLSFNDFDVLPVCKE 141
Query: 164 LGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAK-SCV---LVS 219
GN T L+FL L + LD+ LP SC+ LVS
Sbjct: 142 FGNLTKLTFLG-------------LSAAKFRQLDL--------LPVAHLHLSCILLDLVS 180
Query: 220 LNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQ------------- 266
++ G E P N L ++ N+ + ++ L LQ
Sbjct: 181 YHIKGGETESLQIP---NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR 237
Query: 267 VLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEV 326
++T S RGP T + +F P+ YLN + + + E
Sbjct: 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297
Query: 327 NY----MRSLNYSYY---------ESISLTMKGNNIQMERILTT-------------FAT 360
Y ++SL + E++ NI+M I T F
Sbjct: 298 TYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF 357
Query: 361 IDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSL--RNLTELESLDLSSNKL 416
++ + N F + Q L L++L + N L +L +N++ LE+LD+S N L
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL 415
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 8 TLYFLDLSRNFLTSIDH---LPW-KNLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTG 63
+L LD+S N L S + W +++ L L SN+L GS+ P V++L +N+
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM 463
Query: 64 EIPSSFCNLSSIQYLNLSNNSLSG 87
IP +L ++Q LN+++N L
Sbjct: 464 SIPKDVTHLQALQELNVASNQLKS 487
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 5/137 (3%)
Query: 96 STLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLI--NCVKLHFLDVGN 153
S+ L+ N F ++ Q + L L L N L+ +L+ N L LDV
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412
Query: 154 NNL-SGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFA 212
N+L S + S+ LN+ +N L+G + CL +++LD+ N+ S+P+
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRI-MSIPKDVT 470
Query: 213 KSCVLVSLNLNGNRLEG 229
L LN+ N+L+
Sbjct: 471 HLQALQELNVASNQLKS 487
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 56 ISNNSLTGEIPSSFCNLS-SIQYLNLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGTIPQ 114
+S NSL C + SI LNLS+N L+G + +CL ++ LDL NN +IP+
Sbjct: 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLH-NNRIMSIPK 467
Query: 115 TYAKGCNLSYLRLSGNHLEG 134
L L ++ N L+
Sbjct: 468 DVTHLQALQELNVASNQLKS 487
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 360 TIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAG 418
++LSSN G + + L +K L++ HNN IP + +L L+ L+++SN+L
Sbjct: 432 VLNLSSNMLTGSVFRCLPP--KVKVLDL-HNNRIMSIPKDVTHLQALQELNVASNQLKS 487
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 82/208 (39%), Gaps = 40/208 (19%)
Query: 44 LPDLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLN---------LSNNSLSG------- 87
+P+LP H+ + +S NS+ +SF L +Q+L + NN+ G
Sbjct: 25 VPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL 84
Query: 88 -----QIPQCL-----GNSTLETLDLRMNNFQGTI--PQTYAKGCNLSYLRLSGNHLEGP 135
Q Q G + LE L L N G + + +L L L N+++
Sbjct: 85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144
Query: 136 LPPS-LINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGP--------IPE 186
P S +N + H LD+ N + E L N F +R +S++ +
Sbjct: 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204
Query: 187 C---LGNSTLEILDMRMNKFSGSLPQTF 211
C N+++ LD+ N F S+ + F
Sbjct: 205 CGNPFKNTSITTLDLSGNGFKESMAKRF 232
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 84/205 (40%), Gaps = 14/205 (6%)
Query: 220 LNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPI 279
LNL N ++ + + RHLE++ + N + + + LP L L L NR
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL--TT 97
Query: 280 GDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYES 339
T+ KLR + L N + P + N ++ D E+ + ++ + +E
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLRRLDLG--ELKRLEYISEAAFEG 154
Query: 340 ISLTMKGNNIQMERI--------LTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNN 391
+ + ++ N+ M + L ++LS NR L SL+ L + H
Sbjct: 155 L-VNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQ 213
Query: 392 LTGGIPSSLRNLTELESLDLSSNKL 416
+ ++ +L LE L+LS N L
Sbjct: 214 VATIERNAFDDLKSLEELNLSHNNL 238
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 85/374 (22%), Positives = 146/374 (39%), Gaps = 59/374 (15%)
Query: 97 TLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNL 156
+++LDL N + NL L L+ N + S + L LD+ N L
Sbjct: 27 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 86
Query: 157 SGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGN--STLEILDM-RMNKFSGSLPQTFAK 213
S + +SL+FLN+ N L + + L+IL + M+ F+ + FA
Sbjct: 87 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 146
Query: 214 SCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSN 273
L L ++ + L+ P SL + +++ + + Q ++DV ++ L LR
Sbjct: 147 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 206
Query: 274 RF---------RGPIGDTKTRVPFPKLRIIDLS-------YNRFTGVLPIWY----LNGF 313
G + F ++I D S N+ +G+L + + LNG
Sbjct: 207 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFDDCTLNGV 266
Query: 314 KAMMHGDDN------STEVNYMRSLN----YSYYE---SISLTMKGNNIQME-------- 352
D++ E +R L+ Y +Y+ SLT + I +E
Sbjct: 267 GNFRASDNDRVIDPGKVETLTIRRLHIPRFYLFYDLSTLYSLTERVKRITVENSKVFLVP 326
Query: 353 ----RILTTFATIDLSSNRFQGEI---SQVLGKLNSLKSLNISHNNL-----TGGIPSSL 400
+ L + +DLS N E S SL++L + N+L TG +L
Sbjct: 327 CLLSQHLKSLEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTL 386
Query: 401 RNLTELESLDLSSN 414
+NLT ++D+S N
Sbjct: 387 KNLT---NIDISKN 397
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 92/383 (24%), Positives = 145/383 (37%), Gaps = 75/383 (19%)
Query: 96 STLETLDLRMNNFQGTIPQTYAKGC-NLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNN 154
+ +++LDL N I + C NL L L + + + + L LD+ +N
Sbjct: 52 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 110
Query: 155 NLSGPIPEYLGNSTSLSFLNVRNN-----SLSGPIPECLGNSTLEILDMRMNKFSGSLPQ 209
+LS + G +SL +LN+ N ++ P TL I + + FS
Sbjct: 111 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN--VETFSEIRRI 168
Query: 210 TFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLT 269
FA L L + L SL + R + + + ++ + D+L ++ L
Sbjct: 169 DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 228
Query: 270 LRSN---RFR-GPIGDTKTRVPFPKLR-----IIDLSYNRFTGVLPI-----------WY 309
LR RF+ P+ + P KL + D S+N +L
Sbjct: 229 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 288
Query: 310 LNGFKAMMHGDDNSTEVNYMRSLN---------------YSYYE---SISLTMKGNNIQM 351
LNG GD N +E + + L Y +Y+ SL K I +
Sbjct: 289 LNGL-----GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 343
Query: 352 E------------RILTTFATIDLSSNRFQGEI---SQVLGKLNSLKSLNISHNNL---- 392
E + L + +DLS N E S G SL++L +S N+L
Sbjct: 344 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 403
Query: 393 -TGGIPSSLRNLTELESLDLSSN 414
TG I +L+NLT SLD+S N
Sbjct: 404 KTGEILLTLKNLT---SLDISRN 423
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 5/135 (3%)
Query: 144 VKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSG-PIPECLGNSTLEILDMRMNK 202
KL +L++ N L + T L L + NN L+ P+ + L+ L + N+
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 203 FSGSLPQ-TFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPH-WLD 260
SLP F + L L LN N+L+ + +L+ + + NQ+ ++ PH D
Sbjct: 119 LK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL-QSVPHGAFD 176
Query: 261 VLPELQVLTLRSNRF 275
L +LQ +TL N+F
Sbjct: 177 RLGKLQTITLFGNQF 191
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 5/135 (3%)
Query: 144 VKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSG-PIPECLGNSTLEILDMRMNK 202
KL +L++ N L + T L L + NN L+ P+ + L+ L + N+
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 203 FSGSLPQ-TFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPH-WLD 260
SLP F + L L LN N+L+ + +L+ + + NQ+ ++ PH D
Sbjct: 119 LK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL-QSVPHGAFD 176
Query: 261 VLPELQVLTLRSNRF 275
L +LQ +TL N+F
Sbjct: 177 RLGKLQTITLFGNQF 191
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 93/236 (39%), Gaps = 33/236 (13%)
Query: 64 EIPSSFCNLSS-IQYLNLSNNSLSGQIPQCLGNSTLE---TLDLRMNNFQG-----TIPQ 114
EIP FC + ++ L S+N L IP ++ ++D N +
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVXGSVDFSYNKIGSEGRNISCSX 667
Query: 115 TYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEY--------LGN 166
KG N S + LS N ++ P L + +NNL IPE N
Sbjct: 668 DDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLXTSIPENSLKPKDGNYKN 726
Query: 167 STSLSFLNVRNNSLSGPIPECLGNSTLEIL---DMRMNKFSGSLPQTFAKSCVLVSLNL- 222
+ L+ +++R N L+ + + +TL L D+ N FS S P S L + +
Sbjct: 727 TYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNXDVSYNCFS-SFPTQPLNSSQLKAFGIR 784
Query: 223 -----NGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSN 273
GNR+ P + C L + +G+N I + + P+L +L + N
Sbjct: 785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK---LTPQLYILDIADN 837
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 3/178 (1%)
Query: 97 TLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNL 156
+++LDL N + NL L L+ N + S + L LD+ N L
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 157 SGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGN--STLEILDM-RMNKFSGSLPQTFAK 213
S + +SL+FLN+ N L + + L+IL + M+ F+ + FA
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172
Query: 214 SCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLR 271
L L ++ + L+ P SL + +++ + + Q ++DV ++ L LR
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 79/198 (39%), Gaps = 24/198 (12%)
Query: 222 LNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGD 281
L+GNR+ S +CR+L ++ + +N + L L+ L L N
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDN-------- 89
Query: 282 TKTRVPFPKLRIIDLSYNRFTGVLPIWYLN--GFKAMMHGDDNSTEVNYMRSLNYSYYES 339
+LR++D + R G L +L+ G + + G + +L Y Y +
Sbjct: 90 -------AQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPG-----LFRGLAALQYLYLQD 137
Query: 340 ISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSS 399
+L +N R L + L NR L+SL L + N++ P +
Sbjct: 138 NNLQALPDNT--FRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHA 195
Query: 400 LRNLTELESLDLSSNKLA 417
R+L L +L L +N L+
Sbjct: 196 FRDLGRLMTLYLFANNLS 213
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 14/155 (9%)
Query: 266 QVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTE 325
QV TL+++R I L I+ S N+ T + P+ L ++ ++ +
Sbjct: 46 QVTTLQADRLG--IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 103
Query: 326 VNYMRSLNYSYYESISLTMKGN---NIQMERILTTFATIDLSSNRFQGEISQVLGKLNSL 382
+ + +L LT+ N +I + LT ++LSSN +IS + G L SL
Sbjct: 104 ITPLANL----TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI-SDISALSG-LTSL 157
Query: 383 KSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 417
+ L+ N +T P L NLT LE LD+SSNK++
Sbjct: 158 QQLSFG-NQVTDLKP--LANLTTLERLDISSNKVS 189
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 14/155 (9%)
Query: 266 QVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTE 325
QV TL+++R I L I+ S N+ T + P+ L ++ ++ +
Sbjct: 47 QVTTLQADRLG--IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 104
Query: 326 VNYMRSLNYSYYESISLTMKGN---NIQMERILTTFATIDLSSNRFQGEISQVLGKLNSL 382
+ + +L LT+ N +I + LT ++LSSN +IS + G L SL
Sbjct: 105 ITPLANL----TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI-SDISALSG-LTSL 158
Query: 383 KSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 417
+ L+ N +T P L NLT LE LD+SSNK++
Sbjct: 159 QQLSFG-NQVTDLKP--LANLTTLERLDISSNKVS 190
>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAO|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
Length = 499
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 92 CLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPL 136
C LET+ +++N G IP T + N+ Y+ G+ LEG L
Sbjct: 296 CTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKL 340
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 92/383 (24%), Positives = 145/383 (37%), Gaps = 75/383 (19%)
Query: 96 STLETLDLRMNNFQGTIPQTYAKGC-NLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNN 154
+ +++LDL N I + C NL L L + + + + L LD+ +N
Sbjct: 26 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84
Query: 155 NLSGPIPEYLGNSTSLSFLNVRNN-----SLSGPIPECLGNSTLEILDMRMNKFSGSLPQ 209
+LS + G +SL +LN+ N ++ P TL I ++ FS
Sbjct: 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET--FSEIRRI 142
Query: 210 TFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLT 269
FA L L + L SL + R + + + ++ + D+L ++ L
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202
Query: 270 LRSN---RFR-GPIGDTKTRVPFPKLR-----IIDLSYNRFTGVLPI-----------WY 309
LR RF+ P+ + P KL + D S+N +L
Sbjct: 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262
Query: 310 LNGFKAMMHGDDNSTEVNYMRSLN---------------YSYYE---SISLTMKGNNIQM 351
LNG GD N +E + + L Y +Y+ SL K I +
Sbjct: 263 LNGL-----GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317
Query: 352 E------------RILTTFATIDLSSNRFQGEI---SQVLGKLNSLKSLNISHNNL---- 392
E + L + +DLS N E S G SL++L +S N+L
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377
Query: 393 -TGGIPSSLRNLTELESLDLSSN 414
TG I +L+NLT SLD+S N
Sbjct: 378 KTGEILLTLKNLT---SLDISRN 397
>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase
pdb|1H6V|B Chain B, Mammalian Thioredoxin Reductase
pdb|1H6V|C Chain C, Mammalian Thioredoxin Reductase
pdb|1H6V|D Chain D, Mammalian Thioredoxin Reductase
pdb|1H6V|E Chain E, Mammalian Thioredoxin Reductase
pdb|1H6V|F Chain F, Mammalian Thioredoxin Reductase
Length = 499
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 92 CLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPL 136
C LET+ +++N G IP T + N+ Y+ G+ LEG L
Sbjct: 296 CTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKL 340
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 89/225 (39%), Gaps = 45/225 (20%)
Query: 220 LNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQIN----------------ETFPHWLDVLP 263
LNL N ++ + + HLEV+ +G N I E F +WL V+P
Sbjct: 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139
Query: 264 --------ELQVLTLRSNRFRGPIGDTKTRVP------FPKLRIID-LSYNRFTGVLPIW 308
+L+ L LR+N RVP +L+ ++ +S F G+ +
Sbjct: 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199
Query: 309 YLNGFKAMMHGDDNSTEVNYMRSLNYS--YYESISLTMKGNNIQMERILTTFATIDL-SS 365
YLN + N T + + L S ++ I ++++ + + L
Sbjct: 200 YLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259
Query: 366 NRFQGEISQVLGKLNSLKSLNISHNNLTG---GIPSSLRNLTELE 407
N F G L SL LN++HNNL+ + + LR L EL
Sbjct: 260 NAFDG--------LASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296
>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant
pdb|3REZ|B Chain B, Glycoprotein Gpib Variant
pdb|3REZ|C Chain C, Glycoprotein Gpib Variant
pdb|3REZ|D Chain D, Glycoprotein Gpib Variant
Length = 129
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 43 SLPDLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNN 83
+LP LP EL+++ N+LT P +F +L ++ +L N
Sbjct: 24 ALPALPARTTELVLTGNNLTSVPPGAFDHLPQLRTAHLGAN 64
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 6 VHTLYFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQG----SLPDLPPHMVELLISNNSL 61
+H+L NF++S +P NL YL L SN L DL V LL+ NN +
Sbjct: 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV-LLLYNNHI 124
Query: 62 TGEIPSSFCNLSSIQYLNLSNNSLS 86
++F +++ +Q L LS N +S
Sbjct: 125 VVVDRNAFEDMAQLQKLYLSQNQIS 149
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 13/165 (7%)
Query: 149 LDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLP 208
L++ +N ++ P L N T ++ L + N L + G +++ LD+ + + P
Sbjct: 74 LELKDNQITDLTP--LKNLTKITELELSGNPLKN-VSAIAGLQSIKTLDLTSTQITDVTP 130
Query: 209 QTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVL 268
+ ++ L+LN PL L N ++L + GNNQ+N+ P L L +L L
Sbjct: 131 LAGLSNLQVLYLDLNQITNISPLA-GLTNLQYLSI---GNNQVNDLTP--LANLSKLTTL 184
Query: 269 TLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGF 313
N+ I D P L + L N+ + V P+ L+
Sbjct: 185 RADDNK----ISDISPLASLPNLIEVHLKDNQISDVSPLANLSNL 225
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 25/139 (17%)
Query: 53 ELLISNNSLT----GEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLRMNNF 108
+L + N SLT G +PS+ +L +++ L+LS+N LG++ L L
Sbjct: 85 KLSLQNCSLTEAGCGVLPSTLRSLPTLRELHLSDNP--------LGDAGLRLL------C 130
Query: 109 QGTI-PQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLG-- 165
+G + PQ + + L Y RL+ E PL L L L V NN++ LG
Sbjct: 131 EGLLDPQCHLEKLQLEYCRLTAASCE-PLASVLRATRALKELTVSNNDIGEAGARVLGQG 189
Query: 166 ---NSTSLSFLNVRNNSLS 181
++ L L + N L+
Sbjct: 190 LADSACQLETLRLENCGLT 208
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 15/87 (17%)
Query: 12 LDLSRNFLTSIDHLPW-KNLEYLTLDSNL-------LQGSLPDLPPHMVELLISNNSLT- 62
+D S N + +D P + L+ L +++N L +LPDL EL+++NNSL
Sbjct: 47 IDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL----TELILTNNSLVE 102
Query: 63 -GEIPSSFCNLSSIQYLNLSNNSLSGQ 88
G++ +L S+ YL + N ++ +
Sbjct: 103 LGDL-DPLASLKSLTYLCILRNPVTNK 128
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 355 LTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 414
L +I+ SN+ + + GK+ LK LN++ N L LT L+ + L +N
Sbjct: 169 LENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 11/119 (9%)
Query: 66 PSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLD-----LRMNNFQGTIPQTYAKGC 120
P F L+++QYL L +N+L Q L + T L N ++P+ +G
Sbjct: 121 PGLFRGLAALQYLYLQDNAL-----QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 175
Query: 121 N-LSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNN 178
+ L L L N + P + + +L L + NNLS E L +L +L + +N
Sbjct: 176 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 11/119 (9%)
Query: 66 PSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLD-----LRMNNFQGTIPQTYAKGC 120
P F L+++QYL L +N+L Q L + T L N ++P+ +G
Sbjct: 122 PGLFRGLAALQYLYLQDNAL-----QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176
Query: 121 N-LSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNN 178
+ L L L N + P + + +L L + NNLS E L +L +L + +N
Sbjct: 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|1SO2|A Chain A, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With A Dihydropyridazine Inhibitor
pdb|1SO2|B Chain B, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With A Dihydropyridazine Inhibitor
pdb|1SO2|C Chain C, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With A Dihydropyridazine Inhibitor
pdb|1SO2|D Chain D, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With A Dihydropyridazine Inhibitor
pdb|1SOJ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|B Chain B, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|C Chain C, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|D Chain D, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|E Chain E, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|F Chain F, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|G Chain G, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|H Chain H, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|J Chain J, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|K Chain K, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|L Chain L, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|I Chain I, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
Length = 420
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 12/113 (10%)
Query: 9 LYFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTGEIPSS 68
LY NFL +DH+ +K +L +++ L DL H + L N+ ++
Sbjct: 208 LYLSRPEYNFLLHLDHVEFKRFRFLVIEAIL----ATDLKKHF-DFLAEFNAKANDV--- 259
Query: 69 FCNLSSIQYLNLSNNSLSGQIPQCLG--NSTLETLDLRMNNFQGTIPQTYAKG 119
N + I++ N ++ L Q+ L N + DL + +G + + Y +G
Sbjct: 260 --NSNGIEWSNENDRLLVCQVCIKLADINGPAKVRDLHLKWTEGIVNEFYEQG 310
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 362 DLSSNRFQGEISQVLGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDL 411
+LS NR G++ + K +LK LN+S N + L+ L L+SLDL
Sbjct: 75 ELSENRISGDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLDL 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,021,472
Number of Sequences: 62578
Number of extensions: 676882
Number of successful extensions: 2357
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 1528
Number of HSP's gapped (non-prelim): 435
length of query: 559
length of database: 14,973,337
effective HSP length: 104
effective length of query: 455
effective length of database: 8,465,225
effective search space: 3851677375
effective search space used: 3851677375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)