Query 008628
Match_columns 559
No_of_seqs 394 out of 4496
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 14:34:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008628.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008628hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.3E-52 5E-57 471.1 35.8 461 5-468 116-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.9E-50 4.1E-55 455.5 34.0 464 3-469 89-589 (968)
3 KOG4194 Membrane glycoprotein 100.0 5.8E-40 1.3E-44 316.5 9.3 402 20-444 44-455 (873)
4 KOG4194 Membrane glycoprotein 100.0 5.4E-39 1.2E-43 309.9 4.1 365 9-417 80-452 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 1.9E-36 4.1E-41 280.2 -10.3 445 7-463 45-540 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 4.3E-35 9.3E-40 271.2 -10.0 423 4-441 65-541 (565)
7 KOG0444 Cytoskeletal regulator 100.0 4.7E-32 1E-36 264.0 -3.8 365 28-445 7-379 (1255)
8 KOG0444 Cytoskeletal regulator 100.0 4E-32 8.7E-37 264.4 -5.0 382 1-436 1-394 (1255)
9 KOG0618 Serine/threonine phosp 100.0 6.2E-31 1.3E-35 267.4 -1.2 419 9-463 47-488 (1081)
10 KOG0618 Serine/threonine phosp 99.9 2.2E-29 4.7E-34 256.2 -5.1 417 11-461 2-462 (1081)
11 PLN03210 Resistant to P. syrin 99.9 1.2E-23 2.6E-28 238.1 26.7 331 28-417 558-906 (1153)
12 PLN03210 Resistant to P. syrin 99.9 1.8E-23 3.8E-28 236.8 26.3 336 48-441 557-906 (1153)
13 KOG4237 Extracellular matrix p 99.9 3.7E-27 7.9E-32 218.5 -3.3 418 11-438 50-498 (498)
14 KOG4237 Extracellular matrix p 99.9 1.7E-25 3.7E-30 207.5 -7.2 391 8-414 68-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 9.8E-21 2.1E-25 199.4 17.4 264 7-308 201-464 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 2.5E-20 5.5E-25 196.4 17.7 214 29-302 202-415 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 7.3E-20 1.6E-24 194.2 13.4 248 7-276 178-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 3.7E-19 8E-24 188.8 10.7 227 7-253 199-429 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2.6E-19 5.6E-24 176.7 1.9 82 100-181 2-94 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 9.2E-19 2E-23 172.8 3.3 180 77-275 2-205 (319)
21 KOG0617 Ras suppressor protein 99.7 1.9E-18 4.1E-23 142.8 -3.9 157 5-165 31-193 (264)
22 PLN03150 hypothetical protein; 99.6 7.5E-16 1.6E-20 163.2 9.5 118 357-474 419-538 (623)
23 KOG0617 Ras suppressor protein 99.6 3.1E-17 6.7E-22 135.7 -4.2 158 71-256 31-190 (264)
24 PLN03150 hypothetical protein; 99.3 1E-11 2.2E-16 131.9 12.0 114 290-446 419-533 (623)
25 KOG3207 Beta-tubulin folding c 99.2 8.4E-12 1.8E-16 118.7 1.6 212 212-442 118-340 (505)
26 KOG0532 Leucine-rich repeat (L 99.1 2E-12 4.4E-17 126.7 -3.7 191 50-249 76-270 (722)
27 COG4886 Leucine-rich repeat (L 99.1 1.2E-10 2.5E-15 118.4 7.2 178 120-307 116-295 (394)
28 COG4886 Leucine-rich repeat (L 99.1 1.1E-10 2.3E-15 118.7 6.5 198 77-282 97-296 (394)
29 KOG1909 Ran GTPase-activating 99.1 3.7E-11 7.9E-16 111.4 1.0 155 140-304 88-256 (382)
30 KOG0532 Leucine-rich repeat (L 99.1 1.2E-11 2.5E-16 121.4 -2.5 195 71-274 73-271 (722)
31 PF14580 LRR_9: Leucine-rich r 99.0 3.1E-10 6.7E-15 98.8 5.2 123 50-175 20-147 (175)
32 KOG1259 Nischarin, modulator o 99.0 4.5E-11 9.8E-16 108.3 -0.3 129 71-205 282-413 (490)
33 KOG3207 Beta-tubulin folding c 99.0 6.4E-11 1.4E-15 112.8 0.6 202 28-229 121-340 (505)
34 KOG1909 Ran GTPase-activating 99.0 4.3E-11 9.4E-16 110.9 -1.0 86 355-440 212-310 (382)
35 KOG1259 Nischarin, modulator o 99.0 8.6E-11 1.9E-15 106.5 0.6 108 193-306 309-416 (490)
36 PF14580 LRR_9: Leucine-rich r 99.0 6.7E-10 1.4E-14 96.7 6.0 110 190-304 18-128 (175)
37 KOG4658 Apoptotic ATPase [Sign 99.0 5.2E-10 1.1E-14 121.5 6.6 126 50-178 524-652 (889)
38 PF13855 LRR_8: Leucine rich r 98.9 5.4E-10 1.2E-14 79.9 2.4 59 381-439 2-60 (61)
39 PF13855 LRR_8: Leucine rich r 98.9 1.1E-09 2.4E-14 78.2 3.2 61 356-416 1-61 (61)
40 KOG0531 Protein phosphatase 1, 98.9 2.1E-10 4.6E-15 116.7 -1.8 266 28-306 49-322 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.8 2.5E-09 5.3E-14 116.4 4.6 255 20-278 514-785 (889)
42 KOG0531 Protein phosphatase 1, 98.8 6.9E-10 1.5E-14 112.9 -1.8 261 8-279 50-321 (414)
43 KOG2120 SCF ubiquitin ligase, 98.5 5E-09 1.1E-13 95.2 -4.2 84 193-276 187-273 (419)
44 KOG2120 SCF ubiquitin ligase, 98.4 4.8E-09 1E-13 95.3 -5.6 180 216-438 186-373 (419)
45 KOG1859 Leucine-rich repeat pr 98.4 1.3E-08 2.8E-13 103.1 -5.3 105 355-465 186-293 (1096)
46 KOG2982 Uncharacterized conser 98.3 2.8E-07 6E-12 84.1 2.5 81 193-274 73-157 (418)
47 KOG1859 Leucine-rich repeat pr 98.3 3E-08 6.5E-13 100.6 -4.1 192 118-320 82-285 (1096)
48 KOG2982 Uncharacterized conser 98.2 8.1E-07 1.7E-11 81.1 3.4 227 69-295 41-285 (418)
49 COG5238 RNA1 Ran GTPase-activa 98.2 3.1E-07 6.7E-12 82.7 0.2 112 192-303 158-286 (388)
50 PRK15386 type III secretion pr 98.2 8.5E-06 1.8E-10 80.0 9.3 52 7-59 52-104 (426)
51 COG5238 RNA1 Ran GTPase-activa 98.1 6.1E-07 1.3E-11 80.8 0.3 188 116-303 88-317 (388)
52 KOG4579 Leucine-rich repeat (L 98.0 2.3E-07 5E-12 74.8 -4.4 99 9-109 29-136 (177)
53 KOG4579 Leucine-rich repeat (L 97.9 4.3E-07 9.2E-12 73.3 -4.3 104 50-157 28-136 (177)
54 PF12799 LRR_4: Leucine Rich r 97.9 1.4E-05 3.1E-10 52.1 3.0 35 382-417 3-37 (44)
55 PRK15386 type III secretion pr 97.8 5.8E-05 1.3E-09 74.3 8.4 57 211-273 48-104 (426)
56 PF12799 LRR_4: Leucine Rich r 97.8 2.6E-05 5.5E-10 50.9 3.3 39 356-395 1-39 (44)
57 KOG3665 ZYG-1-like serine/thre 97.7 1.4E-05 3E-10 85.3 1.9 131 28-160 122-266 (699)
58 KOG1644 U2-associated snRNP A' 97.7 8.9E-05 1.9E-09 64.4 5.7 103 74-177 43-149 (233)
59 KOG1644 U2-associated snRNP A' 97.6 0.00011 2.3E-09 63.9 5.5 107 193-301 44-152 (233)
60 KOG4341 F-box protein containi 97.5 3.8E-06 8.2E-11 80.5 -5.8 81 74-154 139-226 (483)
61 KOG4341 F-box protein containi 97.4 4.2E-06 9E-11 80.2 -6.5 273 28-301 138-438 (483)
62 KOG3665 ZYG-1-like serine/thre 97.2 0.00014 3E-09 77.8 2.3 58 95-154 172-230 (699)
63 PF13306 LRR_5: Leucine rich r 97.2 0.0013 2.7E-08 55.0 7.1 59 115-175 7-65 (129)
64 PF13306 LRR_5: Leucine rich r 97.1 0.0016 3.6E-08 54.3 6.9 79 95-176 11-89 (129)
65 KOG2739 Leucine-rich acidic nu 96.6 0.0014 3E-08 59.6 2.6 100 72-174 42-149 (260)
66 KOG2123 Uncharacterized conser 96.5 0.00011 2.4E-09 66.9 -4.8 102 214-320 18-123 (388)
67 KOG2123 Uncharacterized conser 96.2 0.00037 8.1E-09 63.6 -3.4 81 50-133 20-101 (388)
68 KOG2739 Leucine-rich acidic nu 95.8 0.0058 1.3E-07 55.7 2.5 86 215-303 43-130 (260)
69 KOG1947 Leucine rich repeat pr 95.5 0.0018 4E-08 67.7 -2.4 84 209-302 356-440 (482)
70 KOG1947 Leucine rich repeat pr 95.2 0.0033 7.1E-08 65.8 -1.5 173 118-300 186-373 (482)
71 PF13504 LRR_7: Leucine rich r 95.1 0.011 2.4E-07 29.5 1.0 17 7-23 1-17 (17)
72 PF00560 LRR_1: Leucine Rich R 95.1 0.0076 1.6E-07 32.5 0.4 9 384-392 4-12 (22)
73 PF00560 LRR_1: Leucine Rich R 94.7 0.017 3.8E-07 31.1 1.2 21 357-378 1-21 (22)
74 smart00369 LRR_TYP Leucine-ric 93.8 0.053 1.1E-06 30.5 2.1 22 6-27 1-22 (26)
75 smart00370 LRR Leucine-rich re 93.8 0.053 1.1E-06 30.5 2.1 22 6-27 1-22 (26)
76 KOG4308 LRR-containing protein 92.9 0.00083 1.8E-08 68.8 -11.1 171 209-418 109-304 (478)
77 KOG4308 LRR-containing protein 91.6 0.0019 4.1E-08 66.2 -10.4 62 193-254 235-305 (478)
78 smart00370 LRR Leucine-rich re 91.2 0.18 3.8E-06 28.3 1.9 14 380-393 2-15 (26)
79 smart00369 LRR_TYP Leucine-ric 91.2 0.18 3.8E-06 28.3 1.9 14 380-393 2-15 (26)
80 KOG3864 Uncharacterized conser 91.0 0.035 7.6E-07 48.7 -1.7 81 357-437 102-185 (221)
81 KOG3864 Uncharacterized conser 90.5 0.052 1.1E-06 47.7 -1.1 83 192-274 102-187 (221)
82 KOG0473 Leucine-rich repeat pr 89.5 0.011 2.4E-07 52.8 -6.0 84 355-441 41-124 (326)
83 PF13516 LRR_6: Leucine Rich r 86.2 0.29 6.3E-06 26.8 0.5 19 356-374 2-20 (24)
84 smart00365 LRR_SD22 Leucine-ri 85.0 0.81 1.8E-05 25.7 1.9 17 6-22 1-17 (26)
85 KOG0473 Leucine-rich repeat pr 84.3 0.034 7.4E-07 49.8 -5.9 84 69-155 38-122 (326)
86 smart00364 LRR_BAC Leucine-ric 75.9 2.1 4.5E-05 24.0 1.5 18 7-24 2-19 (26)
87 PF01102 Glycophorin_A: Glycop 74.7 3.8 8.1E-05 33.3 3.3 14 503-516 66-79 (122)
88 KOG4242 Predicted myosin-I-bin 73.2 8.1 0.00018 38.9 5.8 39 264-302 414-453 (553)
89 smart00368 LRR_RI Leucine rich 68.7 4.4 9.6E-05 23.1 1.9 13 8-20 3-15 (28)
90 KOG4242 Predicted myosin-I-bin 67.7 9.2 0.0002 38.6 4.9 101 7-107 165-279 (553)
91 TIGR00864 PCC polycystin catio 67.6 2.7 5.9E-05 51.5 1.5 33 386-418 1-33 (2740)
92 PF02439 Adeno_E3_CR2: Adenovi 65.2 8.2 0.00018 23.8 2.5 11 505-515 7-17 (38)
93 KOG3763 mRNA export factor TAP 58.5 4.7 0.0001 41.4 1.2 60 28-87 218-284 (585)
94 PRK09459 pspG phage shock prot 53.9 11 0.00023 27.3 1.9 7 528-534 59-65 (76)
95 KOG3763 mRNA export factor TAP 48.6 9 0.0002 39.4 1.3 62 355-418 217-284 (585)
96 PF04478 Mid2: Mid2 like cell 47.6 2.3 4.9E-05 35.6 -2.5 12 503-514 51-62 (154)
97 PF11980 DUF3481: Domain of un 44.0 19 0.00041 26.6 2.0 30 499-528 16-45 (87)
98 PF01034 Syndecan: Syndecan do 43.6 6.7 0.00015 27.4 -0.3 16 503-518 11-26 (64)
99 PF00558 Vpu: Vpu protein; In 43.3 21 0.00046 26.5 2.2 20 503-522 9-28 (81)
100 smart00367 LRR_CC Leucine-rich 40.8 20 0.00043 19.8 1.4 12 6-17 1-12 (26)
101 PF15179 Myc_target_1: Myc tar 39.9 38 0.00082 29.3 3.5 26 497-522 16-41 (197)
102 PTZ00370 STEVOR; Provisional 33.6 23 0.0005 33.2 1.4 12 527-538 276-287 (296)
103 TIGR01478 STEVOR variant surfa 32.8 24 0.00053 33.0 1.4 13 526-538 279-291 (295)
104 PF04971 Lysis_S: Lysis protei 31.8 41 0.00089 23.9 2.0 12 504-515 36-47 (68)
105 PF06305 DUF1049: Protein of u 30.8 50 0.0011 23.4 2.6 17 504-520 22-38 (68)
106 COG3105 Uncharacterized protei 30.6 44 0.00096 27.1 2.3 15 508-522 13-27 (138)
107 PF08374 Protocadherin: Protoc 30.5 34 0.00073 30.6 1.8 18 502-519 39-56 (221)
108 PF14575 EphA2_TM: Ephrin type 30.2 62 0.0014 23.8 2.9 17 506-522 6-22 (75)
109 TIGR00864 PCC polycystin catio 30.0 31 0.00068 43.0 2.1 32 362-393 1-32 (2740)
110 PF15179 Myc_target_1: Myc tar 28.3 43 0.00093 29.0 2.0 28 500-527 23-50 (197)
111 PRK11677 hypothetical protein; 26.7 54 0.0012 27.2 2.3 14 508-521 8-21 (134)
112 PF01708 Gemini_mov: Geminivir 26.7 63 0.0014 24.4 2.4 19 527-545 56-77 (91)
113 PF04478 Mid2: Mid2 like cell 25.8 17 0.00037 30.6 -0.7 21 502-522 54-74 (154)
114 PF15050 SCIMP: SCIMP protein 25.7 1.1E+02 0.0023 24.6 3.6 14 509-522 16-29 (133)
115 PF14991 MLANA: Protein melan- 25.6 17 0.00038 28.6 -0.7 6 527-532 44-49 (118)
116 COG3216 Uncharacterized protei 23.7 44 0.00096 28.9 1.3 16 499-514 135-150 (184)
117 PF05725 FNIP: FNIP Repeat; I 22.4 1.5E+02 0.0032 18.9 3.3 8 28-35 12-19 (44)
118 PF03672 UPF0154: Uncharacteri 22.1 1.3E+02 0.0027 21.4 3.1 14 508-521 5-18 (64)
119 PF01102 Glycophorin_A: Glycop 22.0 79 0.0017 25.8 2.4 16 500-515 67-82 (122)
120 PF15106 TMEM156: TMEM156 prot 21.2 88 0.0019 27.9 2.7 15 531-545 202-216 (226)
121 PF09125 COX2-transmemb: Cytoc 21.0 1.6E+02 0.0034 18.1 2.8 21 499-519 14-34 (38)
122 PF15050 SCIMP: SCIMP protein 20.6 99 0.0021 24.8 2.5 24 499-522 9-32 (133)
123 PF03302 VSP: Giardia variant- 20.3 51 0.0011 33.3 1.3 19 504-522 372-390 (397)
124 PF15176 LRR19-TM: Leucine-ric 20.1 1.5E+02 0.0032 23.1 3.3 18 503-520 20-37 (102)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.3e-52 Score=471.05 Aligned_cols=461 Identities=34% Similarity=0.498 Sum_probs=366.2
Q ss_pred CCCccCEEECCCCCCC-CCCcccccCCcEEEccCCcccccCCCCCC---CccEEEeeeccCCcccCccCCCCCCCCEEEc
Q 008628 5 GVHTLYFLDLSRNFLT-SIDHLPWKNLEYLTLDSNLLQGSLPDLPP---HMVELLISNNSLTGEIPSSFCNLSSIQYLNL 80 (559)
Q Consensus 5 ~l~~L~~L~ls~n~~~-~i~~~~~~~L~~L~Ls~n~~~~~~~~~~~---~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 80 (559)
++++|++|++++|+++ .+|....++|++|++++|.+.+.+|..+. +|++|++++|.+.+..|..++++++|++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 6789999999999987 77777779999999999999887776443 8899999999988888888999999999999
Q ss_pred ccCcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcc
Q 008628 81 SNNSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGP 159 (559)
Q Consensus 81 ~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 159 (559)
++|.+.+.+|..+. +++|++|++++|.+.+..|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 275 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc
Confidence 99998888888887 88999999999998888888899999999999999988888888888899999999999888888
Q ss_pred cchhccCCCCCCEEEccCCccccccCcccccCc-cCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCC
Q 008628 160 IPEYLGNSTSLSFLNVRNNSLSGPIPECLGNST-LEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNC 238 (559)
Q Consensus 160 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l 238 (559)
.|..+.++++|++|++++|.+.+.+|..+.... |+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+
T Consensus 276 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~ 355 (968)
T PLN00113 276 IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355 (968)
T ss_pred CchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC
Confidence 888888888888888888888887777765544 8888888888887788888888888888888888877777777777
Q ss_pred CCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecChHhhhccccccc
Q 008628 239 RHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMH 318 (559)
Q Consensus 239 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~ 318 (559)
++|+.|++++|.+++..|.++..+++|+.|++++|.+.+.+|... ..+++|+.|++++|++++..|.. +..++.++.
T Consensus 356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~--~~~~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~ 432 (968)
T PLN00113 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL--GACRSLRRVRLQDNSFSGELPSE-FTKLPLVYF 432 (968)
T ss_pred CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHH--hCCCCCCEEECcCCEeeeECChh-HhcCCCCCE
Confidence 788888888777777667666666666666666666665555443 44556666666666666555543 334444444
Q ss_pred ccCCCCcccc-------------------------cccc-cccceeeeEEeec---CchhhHHHhhccccEEEcCCcccc
Q 008628 319 GDDNSTEVNY-------------------------MRSL-NYSYYESISLTMK---GNNIQMERILTTFATIDLSSNRFQ 369 (559)
Q Consensus 319 ~~~~~~~~~~-------------------------l~~~-~~~~~~~~~~~~~---~~~~~~~~~l~~L~~L~ls~n~l~ 369 (559)
++...+.+.. ++.. .......+.+..+ +........+++|++|++++|.+.
T Consensus 433 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 512 (968)
T PLN00113 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS 512 (968)
T ss_pred EECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcce
Confidence 4444332211 0000 0000111221111 111223445889999999999999
Q ss_pred cccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEeCcCCccccCCCCCCC
Q 008628 370 GEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPEGPQ 449 (559)
Q Consensus 370 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~ 449 (559)
+.+|..+.++++|++|+|++|.+++.+|..|..+++|+.|++++|++++.+|..+.++++|+.+++++|++++.+|....
T Consensus 513 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~ 592 (968)
T PLN00113 513 GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGA 592 (968)
T ss_pred eeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCccCCccccCCCCCCCCC
Q 008628 450 FNTFANDSYSGNSGLCGFP 468 (559)
Q Consensus 450 ~~~~~~~~~~~n~~lc~~~ 468 (559)
+.++....+.||+.+|+.+
T Consensus 593 ~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 593 FLAINASAVAGNIDLCGGD 611 (968)
T ss_pred hcccChhhhcCCccccCCc
Confidence 9999999999999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.9e-50 Score=455.47 Aligned_cols=464 Identities=31% Similarity=0.458 Sum_probs=403.4
Q ss_pred ccCCCccCEEECCCCCCC-CCCcccc---cCCcEEEccCCcccccCCC-CCCCccEEEeeeccCCcccCccCCCCCCCCE
Q 008628 3 DIGVHTLYFLDLSRNFLT-SIDHLPW---KNLEYLTLDSNLLQGSLPD-LPPHMVELLISNNSLTGEIPSSFCNLSSIQY 77 (559)
Q Consensus 3 ~~~l~~L~~L~ls~n~~~-~i~~~~~---~~L~~L~Ls~n~~~~~~~~-~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 77 (559)
+..+++|+.|+|++|.++ .+|...+ ++|++|++++|.+++.+|. .+++|++|+|++|.+.+..|..++++++|++
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 357899999999999998 8998765 9999999999999987774 5669999999999999999999999999999
Q ss_pred EEcccCcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcC
Q 008628 78 LNLSNNSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNL 156 (559)
Q Consensus 78 L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 156 (559)
|++++|.+.+.+|..+. +++|++|++++|.+.+..|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence 99999999989999888 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccchhccCCCCCCEEEccCCccccccCcccccCc-cCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccc
Q 008628 157 SGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNST-LEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSL 235 (559)
Q Consensus 157 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l 235 (559)
.+.+|..+.++++|++|++++|.+.+.+|..+.... |+.|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+
T Consensus 249 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~ 328 (968)
T PLN00113 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328 (968)
T ss_pred ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH
Confidence 999999999999999999999999988888776554 9999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecChHhhhcccc
Q 008628 236 VNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKA 315 (559)
Q Consensus 236 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 315 (559)
..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.++... ..+++|+.|++++|++.+..|.. +..++.
T Consensus 329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~--~~~~~L~~L~l~~n~l~~~~p~~-~~~~~~ 405 (968)
T PLN00113 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL--CSSGNLFKLILFSNSLEGEIPKS-LGACRS 405 (968)
T ss_pred hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH--hCcCCCCEEECcCCEecccCCHH-HhCCCC
Confidence 999999999999999999999999999999999999999998887765 56789999999999999988865 466788
Q ss_pred cccccCCCCccccc-c-------ccccccee-----------------eeEEeecCchhh----HHHhhccccEEEcCCc
Q 008628 316 MMHGDDNSTEVNYM-R-------SLNYSYYE-----------------SISLTMKGNNIQ----MERILTTFATIDLSSN 366 (559)
Q Consensus 316 l~~~~~~~~~~~~l-~-------~~~~~~~~-----------------~~~~~~~~~~~~----~~~~l~~L~~L~ls~n 366 (559)
|+.++...+.+... + ........ ...+...++.+. .....++|+.|++++|
T Consensus 406 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n 485 (968)
T PLN00113 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRN 485 (968)
T ss_pred CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCC
Confidence 88888777654311 1 10000000 000111111110 0111467889999999
Q ss_pred ccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEeCcCCccccCCCC
Q 008628 367 RFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPE 446 (559)
Q Consensus 367 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~ 446 (559)
++++..|..+..+++|++|+|++|.+++.+|..+.++++|++|+|++|.+++.+|..+..+++|+.|++++|++++.+|.
T Consensus 486 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 565 (968)
T PLN00113 486 QFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565 (968)
T ss_pred ccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C-CCCCccCCccccCCCCCCCCCC
Q 008628 447 G-PQFNTFANDSYSGNSGLCGFPL 469 (559)
Q Consensus 447 ~-~~~~~~~~~~~~~n~~lc~~~~ 469 (559)
. ..+..+....+.+|+..+..|.
T Consensus 566 ~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 566 NLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred hHhcCcccCEEeccCCcceeeCCC
Confidence 5 4566778888888887765554
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-40 Score=316.55 Aligned_cols=402 Identities=23% Similarity=0.230 Sum_probs=303.9
Q ss_pred CCCCcccccCCcEEEccCCccccc-----CCCCCCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc
Q 008628 20 TSIDHLPWKNLEYLTLDSNLLQGS-----LPDLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG 94 (559)
Q Consensus 20 ~~i~~~~~~~L~~L~Ls~n~~~~~-----~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 94 (559)
...|.....+-+.||++.+.+... .+..++..+.|++++|.+....+..|.++++|+.+++..|.++ .+|....
T Consensus 44 ~~cpa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~ 122 (873)
T KOG4194|consen 44 SECPATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH 122 (873)
T ss_pred ccCCCcCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccc
Confidence 355666667788899999887753 3334448889999999999888888999999999999999997 7898877
Q ss_pred -CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEE
Q 008628 95 -NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFL 173 (559)
Q Consensus 95 -~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 173 (559)
..+|+.|+|.+|.|+..-...++.++.|++|||+.|.++.+--..|.+-.++++|+|++|+|+..-...|..+.+|.+|
T Consensus 123 ~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL 202 (873)
T ss_pred cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheee
Confidence 7789999999999998888999999999999999999996555677777899999999999998888899999999999
Q ss_pred EccCCccccccCcccccC-ccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccC
Q 008628 174 NVRNNSLSGPIPECLGNS-TLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQIN 252 (559)
Q Consensus 174 ~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 252 (559)
.|+.|+++...+..|... .|+.|+|..|++.-.--..|.++++|+.|.+..|.+......+|..+.++++|+|+.|+++
T Consensus 203 kLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~ 282 (873)
T KOG4194|consen 203 KLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ 282 (873)
T ss_pred ecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence 999999997777777744 4999999999988554678899999999999999999888889999999999999999999
Q ss_pred cccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccCCCCcccccccc
Q 008628 253 ETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSL 332 (559)
Q Consensus 253 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~ 332 (559)
..-.+|+.+++.|+.|++++|.+...-++.. ..+++|++|+++.|+++..-+.. +..+..|+.+....+++..+.+.
T Consensus 283 ~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W--sftqkL~~LdLs~N~i~~l~~~s-f~~L~~Le~LnLs~Nsi~~l~e~ 359 (873)
T KOG4194|consen 283 AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW--SFTQKLKELDLSSNRITRLDEGS-FRVLSQLEELNLSHNSIDHLAEG 359 (873)
T ss_pred hhhcccccccchhhhhccchhhhheeecchh--hhcccceeEeccccccccCChhH-HHHHHHhhhhcccccchHHHHhh
Confidence 9889999999999999999999987666665 55789999999999998655544 34444444444444444333322
Q ss_pred cccceeeeEEeecCchhhHHHhhccccEEEcCCcccccccc---hhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEE
Q 008628 333 NYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEIS---QVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESL 409 (559)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 409 (559)
.+ ..+++|+.|||++|.+...+. ..|.++++|+.|+|.+|++..+...+|.++.+||+|
T Consensus 360 af------------------~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~L 421 (873)
T KOG4194|consen 360 AF------------------VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHL 421 (873)
T ss_pred HH------------------HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccccee
Confidence 11 114455555555555443322 224445555555555555554444455555555555
Q ss_pred eCCCCcCCccCcccccCCCCCCeEeCcCCccccCC
Q 008628 410 DLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPI 444 (559)
Q Consensus 410 ~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 444 (559)
||.+|.+..+-|..|..+ .|++|.+..-.+.|.|
T Consensus 422 dL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 422 DLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDC 455 (873)
T ss_pred cCCCCcceeecccccccc-hhhhhhhcccceEEec
Confidence 555555555555555555 4555555444444444
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-39 Score=309.89 Aligned_cols=365 Identities=21% Similarity=0.236 Sum_probs=294.5
Q ss_pred cCEEECCCCCCCCCCcccc---cCCcEEEccCCcccccCCCCC---CCccEEEeeeccCCcccCccCCCCCCCCEEEccc
Q 008628 9 LYFLDLSRNFLTSIDHLPW---KNLEYLTLDSNLLQGSLPDLP---PHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSN 82 (559)
Q Consensus 9 L~~L~ls~n~~~~i~~~~~---~~L~~L~Ls~n~~~~~~~~~~---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 82 (559)
-+.||+|+|.++++....+ ++|+.+.+..|.++. +|... ++++.|+|.+|.|+....+.++.++.|++||||.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~-IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTR-IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhhh-cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 4568888888888877665 888888888888874 44433 3788899999988877777888888899999998
Q ss_pred CcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccc
Q 008628 83 NSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIP 161 (559)
Q Consensus 83 n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 161 (559)
|.|+...-.+|. -.++++|+|++|.|+..-...|..+.+|..|.|+.|.++...+..|.++++|+.|+|..|++...--
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ 238 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG 238 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence 888754444555 6788899999998888878888888888889999998886666778888899999998888875445
Q ss_pred hhccCCCCCCEEEccCCccccccCcccccCc-cCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCC
Q 008628 162 EYLGNSTSLSFLNVRNNSLSGPIPECLGNST-LEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRH 240 (559)
Q Consensus 162 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~ 240 (559)
..|..+++|+.|.+..|.+...-.+.|.... ++.|+|+.|++...-..++.+++.|+.|++++|.|..+.+++++.+++
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk 318 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK 318 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccc
Confidence 6788888888888888888866555555444 889999999888777788888889999999999888888888888889
Q ss_pred CcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecChHhhhccccccccc
Q 008628 241 LEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGD 320 (559)
Q Consensus 241 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~ 320 (559)
|++|+|+.|+|+...++.|..+..|++|+|+.|.+....... +..+++|+.||++.|.+++.+-....
T Consensus 319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a--f~~lssL~~LdLr~N~ls~~IEDaa~---------- 386 (873)
T KOG4194|consen 319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGA--FVGLSSLHKLDLRSNELSWCIEDAAV---------- 386 (873)
T ss_pred ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhH--HHHhhhhhhhcCcCCeEEEEEecchh----------
Confidence 999999999988888888888888999999998876443322 35678888999998888865432100
Q ss_pred CCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccc
Q 008628 321 DNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSL 400 (559)
Q Consensus 321 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 400 (559)
.+.-+++|+.|++.+|++..+...+|.++.+|++|||.+|.|..+.|++|
T Consensus 387 ------------------------------~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAF 436 (873)
T KOG4194|consen 387 ------------------------------AFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAF 436 (873)
T ss_pred ------------------------------hhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccc
Confidence 00117889999999999998888999999999999999999999999999
Q ss_pred cCCCCCCEEeCCCCcCC
Q 008628 401 RNLTELESLDLSSNKLA 417 (559)
Q Consensus 401 ~~l~~L~~L~Ls~n~l~ 417 (559)
..+ .|++|.++.-.+.
T Consensus 437 e~m-~Lk~Lv~nSssfl 452 (873)
T KOG4194|consen 437 EPM-ELKELVMNSSSFL 452 (873)
T ss_pred ccc-hhhhhhhcccceE
Confidence 998 9999988765443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.9e-36 Score=280.19 Aligned_cols=445 Identities=27% Similarity=0.350 Sum_probs=328.3
Q ss_pred CccCEEECCCCCCCCCCcccc--cCCcEEEccCCcccccCCCCCC--CccEEEeeeccCCcccCccCCCCCCCCEEEccc
Q 008628 7 HTLYFLDLSRNFLTSIDHLPW--KNLEYLTLDSNLLQGSLPDLPP--HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSN 82 (559)
Q Consensus 7 ~~L~~L~ls~n~~~~i~~~~~--~~L~~L~Ls~n~~~~~~~~~~~--~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 82 (559)
..++.+++++|.+..+..... .-|.+|++.+|.+...+|..-. .++.|+.++|.+. ..|..++++.+|+.|+.++
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence 457788889888886655444 7888889988888754433222 7788899999888 7788888899999999999
Q ss_pred CcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccc
Q 008628 83 NSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIP 161 (559)
Q Consensus 83 n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 161 (559)
|.+. .+|+.++ +..++.++..+|.++ ..|..+.++.++..+++.+|++.. .|...-+++.|++||...|-+. .+|
T Consensus 124 n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~-tlP 199 (565)
T KOG0472|consen 124 NELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLE-TLP 199 (565)
T ss_pred ccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhh-cCC
Confidence 9887 5555555 888999999999988 677788888899999999999884 5555555999999999988877 678
Q ss_pred hhccCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCC
Q 008628 162 EYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHL 241 (559)
Q Consensus 162 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L 241 (559)
..++.+.+|..|++..|++. .+|+.-++..|.+++++.|.+.........+++++..||+..|+++ ..|..+..+++|
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~-~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL 277 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIR-FLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSL 277 (565)
T ss_pred hhhcchhhhHHHHhhhcccc-cCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhh
Confidence 88999999999999999988 5665444445999999999988444455568899999999999998 678888888999
Q ss_pred cEEEeecCccCcccchhhcCCCCCcEEEccccccccc------------------------C-------------CCCC-
Q 008628 242 EVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGP------------------------I-------------GDTK- 283 (559)
Q Consensus 242 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------------------------~-------------~~~~- 283 (559)
++||+++|.|++ .|..++++ +|+.|-+.+|++... + +...
T Consensus 278 ~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~ 355 (565)
T KOG0472|consen 278 ERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESF 355 (565)
T ss_pred hhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcc
Confidence 999999999976 45568888 899999999886510 0 0000
Q ss_pred -CCCCCCCceEEEccCccceeecChHhhhccc--ccccccCCCCcccccccccccce---eeeEEeec--CchhhHHHhh
Q 008628 284 -TRVPFPKLRIIDLSYNRFTGVLPIWYLNGFK--AMMHGDDNSTEVNYMRSLNYSYY---ESISLTMK--GNNIQMERIL 355 (559)
Q Consensus 284 -~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~--~l~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~--~~~~~~~~~l 355 (559)
......+.++|++++-+++ .+|...+..-+ ..+..+.+.+.+..++....... +.+.+..+ +......+.+
T Consensus 356 ~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l 434 (565)
T KOG0472|consen 356 PDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQL 434 (565)
T ss_pred cchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhh
Confidence 0012345677777777776 45555554332 23334444444333332111000 11111111 1111233447
Q ss_pred ccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEeC
Q 008628 356 TTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNL 435 (559)
Q Consensus 356 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l 435 (559)
++|+.|++++|-+. .+|..++.+..|+.|+++.|.|. .+|.+...+..++.+-.++|++....|+.+.++..|..||+
T Consensus 435 ~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL 512 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL 512 (565)
T ss_pred hcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc
Confidence 89999999999887 57888999999999999999988 88888888888888888888988887877889999999999
Q ss_pred cCCccccCCCCCCCCCccCCccccCCCC
Q 008628 436 SNNQLEGPIPEGPQFNTFANDSYSGNSG 463 (559)
Q Consensus 436 ~~n~l~~~~p~~~~~~~~~~~~~~~n~~ 463 (559)
.+|.+....|..+....+..+.+.|||.
T Consensus 513 ~nNdlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 513 QNNDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred CCCchhhCChhhccccceeEEEecCCcc
Confidence 9999987666667778888888888864
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=4.3e-35 Score=271.24 Aligned_cols=423 Identities=25% Similarity=0.324 Sum_probs=302.0
Q ss_pred cCCCccCEEECCCCCCCCCCcccc--cCCcEEEccCCcccccCCCCCC--CccEEEeeeccCCcccCccCCCCCCCCEEE
Q 008628 4 IGVHTLYFLDLSRNFLTSIDHLPW--KNLEYLTLDSNLLQGSLPDLPP--HMVELLISNNSLTGEIPSSFCNLSSIQYLN 79 (559)
Q Consensus 4 ~~l~~L~~L~ls~n~~~~i~~~~~--~~L~~L~Ls~n~~~~~~~~~~~--~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 79 (559)
-++..+++|++++|.+.++|..+. ..++.++.++|.+...++.... +++.|+.++|.+. ..++.++.+..|..|+
T Consensus 65 ~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLD 143 (565)
T ss_pred hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhh
Confidence 357788999999999999998887 8899999999988854433222 7888999999888 6777888899999999
Q ss_pred cccCcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCc
Q 008628 80 LSNNSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSG 158 (559)
Q Consensus 80 L~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 158 (559)
..+|++. ..|..+. +.+|..+++.+|++....|..+. ++.|++||...|.+. .+|+.++.+.+|+.|++..|++.
T Consensus 144 ~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~- 219 (565)
T KOG0472|consen 144 ATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR- 219 (565)
T ss_pred ccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-
Confidence 9999988 5555555 88888999999998866666555 888899988888877 78888888888888888888887
Q ss_pred ccchhccCCCCCCEEEccCCccccccCcccc-cCc-cCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCcccc
Q 008628 159 PIPEYLGNSTSLSFLNVRNNSLSGPIPECLG-NST-LEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLV 236 (559)
Q Consensus 159 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~-L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~ 236 (559)
..| .|..+..|++|+++.|.+. .+|.... ..+ +..||+.+|++. ..|+.+..+.+|+.||+++|.++ ..|..++
T Consensus 220 ~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLg 295 (565)
T KOG0472|consen 220 FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLG 295 (565)
T ss_pred cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccc
Confidence 455 6788888888888888877 3444333 333 888888888887 77888888888888888888887 4666788
Q ss_pred CCCCCcEEEeecCccCccc-------------------------------------c-h---hhcCCCCCcEEEcccccc
Q 008628 237 NCRHLEVIDVGNNQINETF-------------------------------------P-H---WLDVLPELQVLTLRSNRF 275 (559)
Q Consensus 237 ~l~~L~~L~l~~n~l~~~~-------------------------------------~-~---~~~~l~~L~~L~L~~n~l 275 (559)
++ .|+.|.+.+|.+..+- + . ......+.+.|++++-++
T Consensus 296 nl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ql 374 (565)
T KOG0472|consen 296 NL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQL 374 (565)
T ss_pred cc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccc
Confidence 87 7888888877552110 0 0 011234556777777666
Q ss_pred cccCCCCCCCCCCCCceEEEccCccceeecChHhhhcccc-cccccCCCCcccccccccccce--eeeEEeec---Cchh
Q 008628 276 RGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKA-MMHGDDNSTEVNYMRSLNYSYY--ESISLTMK---GNNI 349 (559)
Q Consensus 276 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-l~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~---~~~~ 349 (559)
+......+....-.-....+++.|++.. +|... ..++. .+.+..+.+...+.+....+.. +.+++..+ ....
T Consensus 375 t~VPdEVfea~~~~~Vt~VnfskNqL~e-lPk~L-~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~ 452 (565)
T KOG0472|consen 375 TLVPDEVFEAAKSEIVTSVNFSKNQLCE-LPKRL-VELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPE 452 (565)
T ss_pred ccCCHHHHHHhhhcceEEEecccchHhh-hhhhh-HHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcch
Confidence 6443333322222336677888887763 23221 11111 1222233333333322111111 11111111 1111
Q ss_pred hHHHhhccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCC
Q 008628 350 QMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNY 429 (559)
Q Consensus 350 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 429 (559)
+++. +..|+.||+++|+|. .+|..+..+..++.+-.++|++....|+.+.++.+|..||+.+|.+. .+|..++++++
T Consensus 453 e~~~-lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmtn 529 (565)
T KOG0472|consen 453 EMGS-LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTN 529 (565)
T ss_pred hhhh-hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccc
Confidence 2222 667999999999998 68888888888999999999999888888999999999999999999 66779999999
Q ss_pred CCeEeCcCCccc
Q 008628 430 LSVLNLSNNQLE 441 (559)
Q Consensus 430 L~~L~l~~n~l~ 441 (559)
|++|.+++|+|.
T Consensus 530 L~hLeL~gNpfr 541 (565)
T KOG0472|consen 530 LRHLELDGNPFR 541 (565)
T ss_pred eeEEEecCCccC
Confidence 999999999998
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=4.7e-32 Score=263.96 Aligned_cols=365 Identities=25% Similarity=0.324 Sum_probs=253.6
Q ss_pred cCCcEEEccCCcccc-cCCCCCC---CccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCeEe
Q 008628 28 KNLEYLTLDSNLLQG-SLPDLPP---HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLD 102 (559)
Q Consensus 28 ~~L~~L~Ls~n~~~~-~~~~~~~---~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~ 102 (559)
+-.+-+|+++|.++| ..|.... ++++|.|...++. .+|..++.+.+|++|.+++|++.. +...+. ++.|+.+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHh
Confidence 556778888888885 4454433 7888888888887 678888888888888888888763 333344 78888888
Q ss_pred ccCCcCC-CccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccc
Q 008628 103 LRMNNFQ-GTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLS 181 (559)
Q Consensus 103 L~~n~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 181 (559)
+.+|++. .-+|..+-.+..|..|||++|++. ..|..+..-+++-.|+|++|+|..+....|.+++.|-.|+|++|++.
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence 8888764 345666777888888888888887 67888888888888888888887544455677788888888888887
Q ss_pred cccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccc-cCCCccccCCCCCcEEEeecCccCcccchhhc
Q 008628 182 GPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLE-GPLPPSLVNCRHLEVIDVGNNQINETFPHWLD 260 (559)
Q Consensus 182 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 260 (559)
...|..-....|++|+|++|.+...--..+..+++|+.|.+++.+-+ .-+|.++..+.+|..+|++.|.+. ..|..+.
T Consensus 164 ~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly 242 (1255)
T KOG0444|consen 164 MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY 242 (1255)
T ss_pred hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh
Confidence 55555544455888888888765433344455667777777776433 246677777778888888887774 4566777
Q ss_pred CCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccCCCCcccccccccccceeee
Q 008628 261 VLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESI 340 (559)
Q Consensus 261 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~ 340 (559)
++++|+.|+|++|+++..... .....+|++|++|.|+++ .+|....
T Consensus 243 ~l~~LrrLNLS~N~iteL~~~---~~~W~~lEtLNlSrNQLt-~LP~avc------------------------------ 288 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNKITELNMT---EGEWENLETLNLSRNQLT-VLPDAVC------------------------------ 288 (1255)
T ss_pred hhhhhheeccCcCceeeeecc---HHHHhhhhhhccccchhc-cchHHHh------------------------------
Confidence 778888888888877632211 134556777777777776 2332221
Q ss_pred EEeecCchhhHHHhhccccEEEcCCccccc-ccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCcc
Q 008628 341 SLTMKGNNIQMERILTTFATIDLSSNRFQG-EISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGR 419 (559)
Q Consensus 341 ~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 419 (559)
.+++|+.|.+.+|.++- -+|..++.+..|+.+..++|.+. ..|+.+..+..|+.|.|++|++. .
T Consensus 289 -------------KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-T 353 (1255)
T KOG0444|consen 289 -------------KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-T 353 (1255)
T ss_pred -------------hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-e
Confidence 15666666777776652 25666777777777777777765 67777777777777777777776 5
Q ss_pred CcccccCCCCCCeEeCcCCccccCCC
Q 008628 420 IPTQLASLNYLSVLNLSNNQLEGPIP 445 (559)
Q Consensus 420 ~p~~l~~l~~L~~L~l~~n~l~~~~p 445 (559)
+|+.+.-++-|+.||+..|+=.-..|
T Consensus 354 LPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 354 LPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred chhhhhhcCCcceeeccCCcCccCCC
Confidence 66777777777777777776554444
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=4e-32 Score=264.40 Aligned_cols=382 Identities=23% Similarity=0.304 Sum_probs=300.5
Q ss_pred CCccCCCccCEEECCCCCCC--CCCcccc--cCCcEEEccCCcccccCCCCCC---CccEEEeeeccCCcccCccCCCCC
Q 008628 1 MWDIGVHTLYFLDLSRNFLT--SIDHLPW--KNLEYLTLDSNLLQGSLPDLPP---HMVELLISNNSLTGEIPSSFCNLS 73 (559)
Q Consensus 1 ~~~~~l~~L~~L~ls~n~~~--~i~~~~~--~~L~~L~Ls~n~~~~~~~~~~~---~L~~L~L~~n~i~~~~~~~~~~l~ 73 (559)
|-.+-++-++-+|+|+|.++ ..|...- +.++-|.|....+. .+|+.++ +|++|.+++|++. .+-..++.++
T Consensus 1 ~~tgVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp 78 (1255)
T KOG0444|consen 1 MSTGVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLP 78 (1255)
T ss_pred CCccccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccch
Confidence 34567888899999999998 7787665 89999999887776 4455444 8899999999987 4455678899
Q ss_pred CCCEEEcccCcCc--cccCccccCcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEe
Q 008628 74 SIQYLNLSNNSLS--GQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDV 151 (559)
Q Consensus 74 ~L~~L~L~~n~~~--~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 151 (559)
.|+.+++.+|++. |..++.|.+..|+.|||++|.+. ..|..+.+..++-+|+|++|+|..+.-+-|.+++.|-.|||
T Consensus 79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDL 157 (1255)
T ss_pred hhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcc
Confidence 9999999999874 34444455999999999999998 78899999999999999999998544456778999999999
Q ss_pred eCCcCCcccchhccCCCCCCEEEccCCccccccCc-ccccCccCEEEccCCcCC-CCcchhhcCCCCccEEEccCCcccc
Q 008628 152 GNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPE-CLGNSTLEILDMRMNKFS-GSLPQTFAKSCVLVSLNLNGNRLEG 229 (559)
Q Consensus 152 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~L~~n~~~~ 229 (559)
++|++. .+|..+..+..|++|.|++|++...--. .-...+|+.|.+++.+-+ ..+|.++..+.+|..+|++.|.+.
T Consensus 158 S~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp- 235 (1255)
T KOG0444|consen 158 SNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP- 235 (1255)
T ss_pred ccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-
Confidence 999998 5677789999999999999987632111 112234888888886433 468888999999999999999988
Q ss_pred CCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceee-cChH
Q 008628 230 PLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGV-LPIW 308 (559)
Q Consensus 230 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~ 308 (559)
.+|+.+..+++|+.|+|++|.|+.. ........+|++|+++.|+++. +|+.. +.+++|+.|...+|++.-. +|..
T Consensus 236 ~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt~-LP~av--cKL~kL~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 236 IVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLTV-LPDAV--CKLTKLTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred cchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhcc-chHHH--hhhHHHHHHHhccCcccccCCccc
Confidence 7899999999999999999998764 3345677899999999999874 44444 6789999999999987522 2211
Q ss_pred hhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhhcCCCCCEEEcc
Q 008628 309 YLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNIS 388 (559)
Q Consensus 309 ~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls 388 (559)
+ ..+..|+.+..++|.+. ..|+.++.|..|+.|.|+
T Consensus 312 -I------------------------------------------GKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~ 347 (1255)
T KOG0444|consen 312 -I------------------------------------------GKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLD 347 (1255)
T ss_pred -h------------------------------------------hhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccc
Confidence 1 11667788888888876 789999999999999999
Q ss_pred CCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEeCc
Q 008628 389 HNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLS 436 (559)
Q Consensus 389 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~ 436 (559)
+|.+. .+|+++.-++.|+.||+..|.-.-..|.--..-++|+.-++.
T Consensus 348 ~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 348 HNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred cccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 99988 788999999999999999998876666433333456555543
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=6.2e-31 Score=267.42 Aligned_cols=419 Identities=27% Similarity=0.328 Sum_probs=235.8
Q ss_pred cCEEECCCCCCCCCCcccc--cCCcEEEccCCcccccCCCCCC--CccEEEeeeccCCcccCccCCCCCCCCEEEcccCc
Q 008628 9 LYFLDLSRNFLTSIDHLPW--KNLEYLTLDSNLLQGSLPDLPP--HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNS 84 (559)
Q Consensus 9 L~~L~ls~n~~~~i~~~~~--~~L~~L~Ls~n~~~~~~~~~~~--~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 84 (559)
|+.||+|+|.+...|..+. .+|+.|+++.|.+......... +|+.|.|.+|.+. ..|..+..+++|++|++++|.
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~ 125 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNH 125 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhc
Confidence 6777777777766665554 7777777777766643322111 6677777777665 667777777777777777777
Q ss_pred CccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchh
Q 008628 85 LSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEY 163 (559)
Q Consensus 85 ~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 163 (559)
+. .+|..+. ++.++.+..++|..... ++... ++++++..|.+.+.++..+..++. .|+|.+|.+.......
T Consensus 126 f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~ 197 (1081)
T KOG0618|consen 126 FG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSN 197 (1081)
T ss_pred cC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhh
Confidence 75 5555555 66666666666622211 11222 666666666666666666555555 5666666654111000
Q ss_pred -----------------ccCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCc
Q 008628 164 -----------------LGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNR 226 (559)
Q Consensus 164 -----------------~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 226 (559)
....++|+.|+..+|.+. ..........++.++++.|.++ .+|+++..+.+|+.+...+|.
T Consensus 198 ~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 198 LANLEVLHCERNQLSELEISGPSLTALYADHNPLT-TLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNR 275 (1081)
T ss_pred ccchhhhhhhhcccceEEecCcchheeeeccCcce-eeccccccccceeeecchhhhh-cchHHHHhcccceEecccchh
Confidence 112255566666666666 3333334455889999999888 566888999999999999888
Q ss_pred cccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecC
Q 008628 227 LEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLP 306 (559)
Q Consensus 227 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 306 (559)
++ .+|..+....+|+.|....|.+.. +|....++++|+.|+|..|++.......+ .....+|..++.+.|.++.. |
T Consensus 276 l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l-~v~~~~l~~ln~s~n~l~~l-p 351 (1081)
T KOG0618|consen 276 LV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFL-AVLNASLNTLNVSSNKLSTL-P 351 (1081)
T ss_pred HH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccccchHHH-hhhhHHHHHHhhhhcccccc-c
Confidence 85 556666666666666666666643 33345566777777777776643222111 01111234444444443311 1
Q ss_pred hHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhhcCCCCCEEE
Q 008628 307 IWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLN 386 (559)
Q Consensus 307 ~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~ 386 (559)
..--...+.|+.+++..+.+. ...+.......+|+.|+|++|++.......+.++..|++|+
T Consensus 352 ~~~e~~~~~Lq~LylanN~Lt------------------d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~ 413 (1081)
T KOG0618|consen 352 SYEENNHAALQELYLANNHLT------------------DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELN 413 (1081)
T ss_pred cccchhhHHHHHHHHhcCccc------------------ccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHh
Confidence 000111122222222221110 01111122255666666666666654445566666666666
Q ss_pred ccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEeCcCCccccC-CCCCCCCCccCCccccCCCC
Q 008628 387 ISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGP-IPEGPQFNTFANDSYSGNSG 463 (559)
Q Consensus 387 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-~p~~~~~~~~~~~~~~~n~~ 463 (559)
||+|+++ .+|+++..+..|++|...+|++. ..| .+.+++.|+.+|++.|+++.. +|.......++.+++.||.+
T Consensus 414 LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 414 LSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 6666666 55566666666666666666666 344 556666666666666666532 23322225556666666654
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=2.2e-29 Score=256.24 Aligned_cols=417 Identities=27% Similarity=0.316 Sum_probs=279.4
Q ss_pred EEECCCCCCCCCCcccc--cCCcEEEccCCcccccCCCCC---CCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcC
Q 008628 11 FLDLSRNFLTSIDHLPW--KNLEYLTLDSNLLQGSLPDLP---PHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSL 85 (559)
Q Consensus 11 ~L~ls~n~~~~i~~~~~--~~L~~L~Ls~n~~~~~~~~~~---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~ 85 (559)
++|.|...+..||..++ ..++.|+++.|.+...+-+.. .+|+.|++++|.+. ..|..+..+.+|+.|+++.|.+
T Consensus 2 ~vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 2 HVDASDEQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred CcccccccCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence 46778888888888777 458888888887664321111 16888888888887 6777788888888888888887
Q ss_pred ccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEE---------------
Q 008628 86 SGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFL--------------- 149 (559)
Q Consensus 86 ~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L--------------- 149 (559)
. ..|.... +.+|++++|.+|.+. ..|..+..+.+|++|+++.|.+. .+|..+..++.++++
T Consensus 81 ~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ 157 (1081)
T KOG0618|consen 81 R-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTS 157 (1081)
T ss_pred h-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcccc
Confidence 6 5665555 788888888888777 67888888888888888888877 555555554444444
Q ss_pred ----EeeCCcCCcccchhccCCCCCCEEEccCCccccccCc------------------ccccCccCEEEccCCcCCCCc
Q 008628 150 ----DVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPE------------------CLGNSTLEILDMRMNKFSGSL 207 (559)
Q Consensus 150 ----~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------------~~~~~~L~~L~l~~n~~~~~~ 207 (559)
++..|.+.+.++..+..++. .|++..|.+....-. .....+++.|+.+.|.++...
T Consensus 158 ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~ 235 (1081)
T KOG0618|consen 158 IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD 235 (1081)
T ss_pred chhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeec
Confidence 44444444444444444444 466666665511000 011122444444444444111
Q ss_pred chhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCC
Q 008628 208 PQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVP 287 (559)
Q Consensus 208 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 287 (559)
+ -....+|+.++++.|++++ +|+++..+.+|+.++..+|.++ .+|..+....+|+.|.+..|.+.... ... ..
T Consensus 236 ~--~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip-~~l--e~ 308 (1081)
T KOG0618|consen 236 V--HPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIP-PFL--EG 308 (1081)
T ss_pred c--ccccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCC-Ccc--cc
Confidence 1 1112356677777777663 4467777777777777777763 34555556667777777777765332 222 45
Q ss_pred CCCceEEEccCccceeecChHhhhcccc-cccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCc
Q 008628 288 FPKLRIIDLSYNRFTGVLPIWYLNGFKA-MMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSN 366 (559)
Q Consensus 288 l~~L~~L~l~~n~l~~~~~~~~~~~l~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n 366 (559)
++.|++|++..|++....+ .++.-... +..++...+....+++.. ....+.|+.|.+.+|
T Consensus 309 ~~sL~tLdL~~N~L~~lp~-~~l~v~~~~l~~ln~s~n~l~~lp~~~------------------e~~~~~Lq~LylanN 369 (1081)
T KOG0618|consen 309 LKSLRTLDLQSNNLPSLPD-NFLAVLNASLNTLNVSSNKLSTLPSYE------------------ENNHAALQELYLANN 369 (1081)
T ss_pred cceeeeeeehhccccccch-HHHhhhhHHHHHHhhhhcccccccccc------------------chhhHHHHHHHHhcC
Confidence 7888999999888874433 33332222 444444444433333110 112678899999999
Q ss_pred ccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEeCcCCccccCCCC
Q 008628 367 RFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPE 446 (559)
Q Consensus 367 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~ 446 (559)
.+++..-+.+.+..+|+.|+|++|++.......+.++..|++|+||+|.++ .+|+.+.+++.|++|...+|++.. .|+
T Consensus 370 ~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fPe 447 (1081)
T KOG0618|consen 370 HLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FPE 447 (1081)
T ss_pred cccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-chh
Confidence 999988888999999999999999999666678889999999999999999 677999999999999999999994 666
Q ss_pred CCCCCccCCccccCC
Q 008628 447 GPQFNTFANDSYSGN 461 (559)
Q Consensus 447 ~~~~~~~~~~~~~~n 461 (559)
..++..+.-.++..|
T Consensus 448 ~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLSCN 462 (1081)
T ss_pred hhhcCcceEEecccc
Confidence 666666655555544
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=1.2e-23 Score=238.07 Aligned_cols=331 Identities=21% Similarity=0.241 Sum_probs=231.0
Q ss_pred cCCcEEEccCCcc------cccCCCC----CCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc-Cc
Q 008628 28 KNLEYLTLDSNLL------QGSLPDL----PPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NS 96 (559)
Q Consensus 28 ~~L~~L~Ls~n~~------~~~~~~~----~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~ 96 (559)
++|+.|.+.++.. ...+|.. +.+|+.|.+.++.+. ..|..| ...+|+.|++++|.+. .++..+. ++
T Consensus 558 ~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~ 634 (1153)
T PLN03210 558 RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLT 634 (1153)
T ss_pred ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCC
Confidence 7777777755432 1223322 236778888777776 566666 4677888888887775 4555555 77
Q ss_pred ccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEcc
Q 008628 97 TLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVR 176 (559)
Q Consensus 97 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 176 (559)
+|+.|+|+++.....+|. ++.+++|++|++++|.....+|..++++++|+.|++++|.....+|..+ ++++|+.|+++
T Consensus 635 ~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Ls 712 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLS 712 (1153)
T ss_pred CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCC
Confidence 888888887765445553 6677888888888776666777778888888888888775545566544 67788888888
Q ss_pred CCccccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccc-------cCCCccccCCCCCcEEEeecC
Q 008628 177 NNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLE-------GPLPPSLVNCRHLEVIDVGNN 249 (559)
Q Consensus 177 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~-------~~~~~~l~~l~~L~~L~l~~n 249 (559)
+|.....+|.. ..+|+.|++++|.+. .+|..+ .+++|++|++.++... ...+.....+++|+.|++++|
T Consensus 713 gc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 713 GCSRLKSFPDI--STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred CCCCccccccc--cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 87655555543 234788888888776 455443 4677777777664321 112222334568999999999
Q ss_pred ccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccCCCCccccc
Q 008628 250 QINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYM 329 (559)
Q Consensus 250 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l 329 (559)
.....+|..++++++|+.|++++|...+.+|... .+++|+.|++++|.....+|..
T Consensus 789 ~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~---~L~sL~~L~Ls~c~~L~~~p~~--------------------- 844 (1153)
T PLN03210 789 PSLVELPSSIQNLHKLEHLEIENCINLETLPTGI---NLESLESLDLSGCSRLRTFPDI--------------------- 844 (1153)
T ss_pred CCccccChhhhCCCCCCEEECCCCCCcCeeCCCC---CccccCEEECCCCCcccccccc---------------------
Confidence 8777788889999999999999987655666543 5788999999987644333211
Q ss_pred ccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEE
Q 008628 330 RSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESL 409 (559)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 409 (559)
..++++|++++|.+. .+|..+..+++|+.|+|++|+-...+|..+..+++|+.+
T Consensus 845 -------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L 898 (1153)
T PLN03210 845 -------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETV 898 (1153)
T ss_pred -------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCee
Confidence 457888899998887 577788889999999999875544677777888889999
Q ss_pred eCCCCcCC
Q 008628 410 DLSSNKLA 417 (559)
Q Consensus 410 ~Ls~n~l~ 417 (559)
++++|.-.
T Consensus 899 ~l~~C~~L 906 (1153)
T PLN03210 899 DFSDCGAL 906 (1153)
T ss_pred ecCCCccc
Confidence 99888533
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=1.8e-23 Score=236.75 Aligned_cols=336 Identities=16% Similarity=0.204 Sum_probs=256.6
Q ss_pred CCCccEEEeeecc------CCcccCccCCCCC-CCCEEEcccCcCccccCccccCcccCeEeccCCcCCCccchhhcCCC
Q 008628 48 PPHMVELLISNNS------LTGEIPSSFCNLS-SIQYLNLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGC 120 (559)
Q Consensus 48 ~~~L~~L~L~~n~------i~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~ 120 (559)
+.+|+.|.+.++. +....|..|..++ +|+.|++.++.+. .+|..+...+|++|++.+|.+. .+|..+..++
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~~~~L~~L~L~~s~l~-~L~~~~~~l~ 634 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFRPENLVKLQMQGSKLE-KLWDGVHSLT 634 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCCccCCcEEECcCcccc-ccccccccCC
Confidence 3478888886653 2234566666664 6999999998886 7788778889999999999887 5677788899
Q ss_pred CCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCcccccCccCEEEccC
Q 008628 121 NLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRM 200 (559)
Q Consensus 121 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 200 (559)
+|+.|+++++.....+| .++.+++|++|++++|.....+|..+..+++|+.|++++|.....+|......+|+.|++++
T Consensus 635 ~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsg 713 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSG 713 (1153)
T ss_pred CCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCC
Confidence 99999999876555666 47889999999999987766788889999999999999887666777766666699999999
Q ss_pred CcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccC-------cccchhhcCCCCCcEEEcccc
Q 008628 201 NKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQIN-------ETFPHWLDVLPELQVLTLRSN 273 (559)
Q Consensus 201 n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~L~~n 273 (559)
|.....+|.. ..+|+.|++++|.+. .+|..+ .+++|++|++.++... ...+......++|++|++++|
T Consensus 714 c~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 714 CSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred CCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 8665555543 357889999999876 455544 5678888888764321 111222234568889999988
Q ss_pred cccccCCCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHH
Q 008628 274 RFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMER 353 (559)
Q Consensus 274 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 353 (559)
...+.+|... ..+++|+.|++++|...+.+|...
T Consensus 789 ~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~LP~~~-------------------------------------------- 822 (1153)
T PLN03210 789 PSLVELPSSI--QNLHKLEHLEIENCINLETLPTGI-------------------------------------------- 822 (1153)
T ss_pred CCccccChhh--hCCCCCCEEECCCCCCcCeeCCCC--------------------------------------------
Confidence 8777777664 678889999998876544444221
Q ss_pred hhccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeE
Q 008628 354 ILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVL 433 (559)
Q Consensus 354 ~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 433 (559)
.+++|+.|++++|.....+|. ..++|+.|+|++|.++ .+|..+..+++|+.|++++|.-...+|..+..+++|+.+
T Consensus 823 ~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L 898 (1153)
T PLN03210 823 NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETV 898 (1153)
T ss_pred CccccCEEECCCCCccccccc---cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCee
Confidence 167899999999876555554 3468999999999998 678899999999999999977666788888899999999
Q ss_pred eCcCCccc
Q 008628 434 NLSNNQLE 441 (559)
Q Consensus 434 ~l~~n~l~ 441 (559)
++++|.-.
T Consensus 899 ~l~~C~~L 906 (1153)
T PLN03210 899 DFSDCGAL 906 (1153)
T ss_pred ecCCCccc
Confidence 99999543
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=3.7e-27 Score=218.52 Aligned_cols=418 Identities=19% Similarity=0.189 Sum_probs=223.9
Q ss_pred EEECCCCCCCCCCcccccCCcEEEccCCcccccCCCCCC---CccEEEeeeccCCcccCccCCCCCCCCEEEccc-CcCc
Q 008628 11 FLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLPP---HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSN-NSLS 86 (559)
Q Consensus 11 ~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~~~~~~~~---~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~~~ 86 (559)
.+|.++.+++++|....+.-..++|..|+|+...+..|. +|+.|||++|+|+.+.|++|..+..|..|-+-+ |+|+
T Consensus 50 ~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred eEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 455566666666666666666666666666655555444 556666666666666666666666555554444 5555
Q ss_pred cccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCc-------
Q 008628 87 GQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSG------- 158 (559)
Q Consensus 87 ~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~------- 158 (559)
......|. +..|+.|.+.-|++.....+.|..+++|..|.+.+|.+..+.-.+|..+..++++.+..|.+..
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchh
Confidence 33333444 6666666666666655555666666666666666665553222355556666666555554210
Q ss_pred -----ccchhccCCCCCCEEEccCCccccccCcccccCccCEE--EccCCc-CCCCc-chhhcCCCCccEEEccCCcccc
Q 008628 159 -----PIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEIL--DMRMNK-FSGSL-PQTFAKSCVLVSLNLNGNRLEG 229 (559)
Q Consensus 159 -----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L--~l~~n~-~~~~~-~~~~~~~~~L~~L~L~~n~~~~ 229 (559)
..|-.++......-..+.+.++....+.-+... ++.+ .++... ..+.. ...|..+++|++|++++|+++.
T Consensus 210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~-~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 210 ADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS-LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR 288 (498)
T ss_pred hhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh-HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence 011111111111111122222221111111111 1211 111111 22222 2567888999999999999998
Q ss_pred CCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecChHh
Q 008628 230 PLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWY 309 (559)
Q Consensus 230 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 309 (559)
+.+.+|.+...+++|.|..|++...-...|.++..|+.|+|.+|+++...+..+ ..+.+|.+|++-.|++.-.--..+
T Consensus 289 i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF--~~~~~l~~l~l~~Np~~CnC~l~w 366 (498)
T KOG4237|consen 289 IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF--QTLFSLSTLNLLSNPFNCNCRLAW 366 (498)
T ss_pred hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc--cccceeeeeehccCcccCccchHH
Confidence 888899999999999999999887777888899999999999999987766555 667788899988888765443333
Q ss_pred hhcc-ccc-ccccCCCCcccccccccccceeeeEEeecCch-hh------HHHhhcccc-EEEcCCcccccccchhhhcC
Q 008628 310 LNGF-KAM-MHGDDNSTEVNYMRSLNYSYYESISLTMKGNN-IQ------MERILTTFA-TIDLSSNRFQGEISQVLGKL 379 (559)
Q Consensus 310 ~~~l-~~l-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~------~~~~l~~L~-~L~ls~n~l~~~~~~~~~~l 379 (559)
+..+ ++- ...+.......++....++....-.....+.. .. ..+.++-+. +...|+..+. .+|..+.
T Consensus 367 l~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP-- 443 (498)
T KOG4237|consen 367 LGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP-- 443 (498)
T ss_pred HHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--
Confidence 3322 211 11111112222232222222111000000000 00 000011111 1122232222 2332221
Q ss_pred CCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEeCcCC
Q 008628 380 NSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNN 438 (559)
Q Consensus 380 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n 438 (559)
..-.+|++.+|.++ .+|.. .+.+| .+|+++|++...--..|.+++.|.+|-+++|
T Consensus 444 ~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 444 VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 23456777777776 44544 45566 7777777777555556777777777777665
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=1.7e-25 Score=207.48 Aligned_cols=391 Identities=21% Similarity=0.172 Sum_probs=246.1
Q ss_pred ccCEEECCCCCCCCCCcccc---cCCcEEEccCCcccccCCCCCCC---ccEE-EeeeccCCcccCccCCCCCCCCEEEc
Q 008628 8 TLYFLDLSRNFLTSIDHLPW---KNLEYLTLDSNLLQGSLPDLPPH---MVEL-LISNNSLTGEIPSSFCNLSSIQYLNL 80 (559)
Q Consensus 8 ~L~~L~ls~n~~~~i~~~~~---~~L~~L~Ls~n~~~~~~~~~~~~---L~~L-~L~~n~i~~~~~~~~~~l~~L~~L~L 80 (559)
.-+.++|..|+|+.||...| ++||.||||+|+|+.+-|+.|.. +..| +.++|+|++...+.|+++..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 35679999999999999988 99999999999999988988874 4444 44569999888889999999999999
Q ss_pred ccCcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCC------------CCCccCCCCCCcc
Q 008628 81 SNNSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEG------------PLPPSLINCVKLH 147 (559)
Q Consensus 81 ~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~------------~~~~~l~~l~~L~ 147 (559)
.-|.+.-.....+. +++|..|.+.+|.+......+|..+..++.+.+..|.+.. ..|..++......
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 99999866667777 9999999999999986666689999999999999887431 2233333333333
Q ss_pred EEEeeCCcCCcccchhccCC-CCCCEEEccCCccccccC-cccccC-ccCEEEccCCcCCCCcchhhcCCCCccEEEccC
Q 008628 148 FLDVGNNNLSGPIPEYLGNS-TSLSFLNVRNNSLSGPIP-ECLGNS-TLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNG 224 (559)
Q Consensus 148 ~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~-~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 224 (559)
-..+.+.++....+..|... ..+..-..+.+...+.-| .++... .|++|++++|++++.-+.+|.+..++++|+|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 33333333332222222111 111111111221222222 223332 377777777777766677777777777777777
Q ss_pred CccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccc-----------------cCCCCCCCCC
Q 008628 225 NRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRG-----------------PIGDTKTRVP 287 (559)
Q Consensus 225 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~~~~~~ 287 (559)
|++..+...+|.++..|+.|+|.+|+|+...|.+|..+.+|.+|++-.|++.- ..|.. ..
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~C---q~ 384 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRC---QS 384 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCC---CC
Confidence 77776666677777777777777777777777777777777777776665431 11111 11
Q ss_pred CCCceEEEccCccceeecChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCcc
Q 008628 288 FPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNR 367 (559)
Q Consensus 288 l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~ 367 (559)
-..++.+++++..+...-.. .-........-.+. .....+. +.+..+.+....-........++|++.+|.
T Consensus 385 p~~~~~~~~~dv~~~~~~c~-~~ee~~~~~s~~cP-~~c~c~~-------tVvRcSnk~lk~lp~~iP~d~telyl~gn~ 455 (498)
T KOG4237|consen 385 PGFVRQIPISDVAFGDFRCG-GPEELGCLTSSPCP-PPCTCLD-------TVVRCSNKLLKLLPRGIPVDVTELYLDGNA 455 (498)
T ss_pred CchhccccchhccccccccC-CccccCCCCCCCCC-CCcchhh-------hhHhhcccchhhcCCCCCchhHHHhcccch
Confidence 23566777776655422110 00000000000000 0000000 000000000000000113456789999999
Q ss_pred cccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCC
Q 008628 368 FQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 414 (559)
Q Consensus 368 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 414 (559)
++ .+|.. .+.+| .+++++|+++..-...|.++++|.+|-|++|
T Consensus 456 ~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 456 IT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 98 45554 66788 9999999999788889999999999999876
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=9.8e-21 Score=199.42 Aligned_cols=264 Identities=26% Similarity=0.328 Sum_probs=209.7
Q ss_pred CccCEEECCCCCCCCCCcccccCCcEEEccCCcccccCCCCCCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCc
Q 008628 7 HTLYFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS 86 (559)
Q Consensus 7 ~~L~~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~ 86 (559)
.+-..|+|+.++++++|..+.++|+.|++++|.++. +|..+++|++|++++|+++ .+|.. .++|+.|++++|.+.
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT 275 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCC-CCCCCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh
Confidence 346789999999999999888999999999999995 6777889999999999999 45543 478999999999987
Q ss_pred cccCccccCcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccC
Q 008628 87 GQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGN 166 (559)
Q Consensus 87 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 166 (559)
.+|.. ..+|+.|++++|.++. +|.. +++|++|++++|++.+ +|.. ..+|+.|++++|.+++ +|..
T Consensus 276 -~Lp~l--p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l--- 340 (788)
T PRK15387 276 -HLPAL--PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL--- 340 (788)
T ss_pred -hhhhc--hhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---
Confidence 45542 4678999999999984 4542 4789999999999984 5542 3468889999999984 4532
Q ss_pred CCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEe
Q 008628 167 STSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDV 246 (559)
Q Consensus 167 l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 246 (559)
..+|+.|++++|++.+ +|.. ..+|+.|++++|.+. .+|.. ..+|+.|++++|.+++ +|.. .++|+.|++
T Consensus 341 p~~Lq~LdLS~N~Ls~-LP~l--p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdL 409 (788)
T PRK15387 341 PSGLQELSVSDNQLAS-LPTL--PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMV 409 (788)
T ss_pred ccccceEecCCCccCC-CCCC--Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEc
Confidence 2579999999999985 4543 245899999999988 45643 3579999999999985 4533 367999999
Q ss_pred ecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecChH
Q 008628 247 GNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIW 308 (559)
Q Consensus 247 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 308 (559)
++|.++. +|.. ..+|+.|++++|+++ .+|..+ ..+++|+.|++++|++++..+..
T Consensus 410 S~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl--~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 410 SGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESL--IHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred cCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHH--hhccCCCeEECCCCCCCchHHHH
Confidence 9999976 4543 357889999999997 455544 57889999999999999876654
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=2.5e-20 Score=196.36 Aligned_cols=214 Identities=27% Similarity=0.351 Sum_probs=106.6
Q ss_pred CCcEEEccCCcccccCCCCCCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCccccCcccCeEeccCCcC
Q 008628 29 NLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLRMNNF 108 (559)
Q Consensus 29 ~L~~L~Ls~n~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~L~~n~~ 108 (559)
+-..||++++.++..++....+|+.|++++|+++ .+|. ..++|++|++++|+++ .+|.. .++|+.|++++|.+
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l--p~sL~~L~Ls~N~L 274 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL--PPGLLELSIFSNPL 274 (788)
T ss_pred CCcEEEcCCCCCCcCCcchhcCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc--ccccceeeccCCch
Confidence 4456666666666332223336666666666666 3342 2356666666666665 33422 34556666666655
Q ss_pred CCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCccc
Q 008628 109 QGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECL 188 (559)
Q Consensus 109 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 188 (559)
. .+|.. ..+|+.|++++|++. .+|. ..++|++|++++|.+++ +|.. ..+
T Consensus 275 ~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~------------------- 323 (788)
T PRK15387 275 T-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSE------------------- 323 (788)
T ss_pred h-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---ccc-------------------
Confidence 5 22322 234555555555555 2332 12445555555555543 2221 122
Q ss_pred ccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEE
Q 008628 189 GNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVL 268 (559)
Q Consensus 189 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 268 (559)
|+.|++++|.++ .+|.. ..+|+.|++++|++++ +|.. ..+|+.|++++|.++. +|.. ..+|+.|
T Consensus 324 ----L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~L 387 (788)
T PRK15387 324 ----LCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKEL 387 (788)
T ss_pred ----ccccccccCccc-ccccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceE
Confidence 444445555444 22321 1356666666666663 3321 2356666677766654 3321 2356666
Q ss_pred EcccccccccCCCCCCCCCCCCceEEEccCccce
Q 008628 269 TLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFT 302 (559)
Q Consensus 269 ~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 302 (559)
++++|++.+ +|.. .++|+.|++++|+++
T Consensus 388 dLs~N~Lt~-LP~l-----~s~L~~LdLS~N~Ls 415 (788)
T PRK15387 388 IVSGNRLTS-LPVL-----PSELKELMVSGNRLT 415 (788)
T ss_pred EecCCcccC-CCCc-----ccCCCEEEccCCcCC
Confidence 666666653 2211 234555666666554
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=7.3e-20 Score=194.19 Aligned_cols=248 Identities=29% Similarity=0.452 Sum_probs=163.0
Q ss_pred CccCEEECCCCCCCCCCcccccCCcEEEccCCcccccCCCCCCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCc
Q 008628 7 HTLYFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS 86 (559)
Q Consensus 7 ~~L~~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~ 86 (559)
.+.+.|++++++++.+|..+.+.|+.|++++|.++......+.+|+.|++++|.++ .+|..+. .+|+.|++++|.+.
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT 254 (754)
T ss_pred cCceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC
Confidence 35678888888888888877788888888888888654455558888888888887 4555443 46888888888876
Q ss_pred cccCccccCcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccC
Q 008628 87 GQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGN 166 (559)
Q Consensus 87 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 166 (559)
.+|..+ .++|+.|++++|.+. .+|..+. .+|++|++++|++. .+|..+. ++|+.|++++|.++. +|..+
T Consensus 255 -~LP~~l-~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l-- 323 (754)
T PRK15370 255 -ELPERL-PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-LPETL-- 323 (754)
T ss_pred -cCChhH-hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-CCccc--
Confidence 556544 357888888888877 4555443 47888888888777 3554432 467778888887774 34333
Q ss_pred CCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEe
Q 008628 167 STSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDV 246 (559)
Q Consensus 167 l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 246 (559)
.++|+.|++++|.+++ +|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|.++. +|..+. .+|+.|++
T Consensus 324 ~~sL~~L~Ls~N~Lt~-LP~~l~-~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdL 395 (754)
T PRK15370 324 PPGLKTLEAGENALTS-LPASLP-PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--AALQIMQA 395 (754)
T ss_pred cccceeccccCCcccc-CChhhc-CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HHHHHHhh
Confidence 2567777777777764 444332 34777777777766 3454442 467777777777663 344332 25666777
Q ss_pred ecCccCcc---cchhhcCCCCCcEEEccccccc
Q 008628 247 GNNQINET---FPHWLDVLPELQVLTLRSNRFR 276 (559)
Q Consensus 247 ~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~ 276 (559)
++|++... ++..+...+++..+++.+|++.
T Consensus 396 s~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 396 SRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred ccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 77766532 1222333455666666666653
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=3.7e-19 Score=188.84 Aligned_cols=227 Identities=29% Similarity=0.403 Sum_probs=182.7
Q ss_pred CccCEEECCCCCCCCCCcccccCCcEEEccCCcccccCCCCCCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCc
Q 008628 7 HTLYFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS 86 (559)
Q Consensus 7 ~~L~~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~ 86 (559)
++|+.|++++|.++.+|...+++|++|++++|.++......+.+|+.|+|++|.+. .+|..+. ++|+.|++++|.+.
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~ 275 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS 275 (754)
T ss_pred cCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhhhccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC
Confidence 46999999999999999988899999999999998543344459999999999998 5676654 58999999999998
Q ss_pred cccCccccCcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccC
Q 008628 87 GQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGN 166 (559)
Q Consensus 87 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 166 (559)
.+|..+ ..+|+.|++++|.++. +|..+. .+|++|++++|.+. .+|..+ .++|+.|++++|.++. +|..+.
T Consensus 276 -~LP~~l-~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~- 345 (754)
T PRK15370 276 -CLPENL-PEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTS-LPASLP- 345 (754)
T ss_pred -cccccc-CCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCCccc--cccceeccccCCcccc-CChhhc-
Confidence 567644 4689999999999984 454442 47999999999998 456544 3689999999999985 566553
Q ss_pred CCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCcc----ccCCCCCc
Q 008628 167 STSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPS----LVNCRHLE 242 (559)
Q Consensus 167 l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~----l~~l~~L~ 242 (559)
++|+.|++++|++. .+|..+. ..|+.|++++|.++ .+|..+. ..|+.|++++|++. .+|.. +..++++.
T Consensus 346 -~sL~~L~Ls~N~L~-~LP~~lp-~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~ 418 (754)
T PRK15370 346 -PELQVLDVSKNQIT-VLPETLP-PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPT 418 (754)
T ss_pred -CcccEEECCCCCCC-cCChhhc-CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCcc
Confidence 78999999999998 4565542 46999999999998 5565554 36999999999998 44544 34457899
Q ss_pred EEEeecCccCc
Q 008628 243 VIDVGNNQINE 253 (559)
Q Consensus 243 ~L~l~~n~l~~ 253 (559)
.|++.+|.++.
T Consensus 419 ~L~L~~Npls~ 429 (754)
T PRK15370 419 RIIVEYNPFSE 429 (754)
T ss_pred EEEeeCCCccH
Confidence 99999999863
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=2.6e-19 Score=176.74 Aligned_cols=82 Identities=24% Similarity=0.244 Sum_probs=48.4
Q ss_pred eEeccCCcCC-CccchhhcCCCCCCEEEcccCcCCCC----CCccCCCCCCccEEEeeCCcCCc------ccchhccCCC
Q 008628 100 TLDLRMNNFQ-GTIPQTYAKGCNLSYLRLSGNHLEGP----LPPSLINCVKLHFLDVGNNNLSG------PIPEYLGNST 168 (559)
Q Consensus 100 ~L~L~~n~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~------~~~~~~~~l~ 168 (559)
.|+|..+.++ +.....+..+..|++|+++++.++.. ++..+...+++++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 3566666665 33445556666777888877776432 33445556667777777766541 1223455566
Q ss_pred CCCEEEccCCccc
Q 008628 169 SLSFLNVRNNSLS 181 (559)
Q Consensus 169 ~L~~L~l~~n~l~ 181 (559)
+|+.|++++|.+.
T Consensus 82 ~L~~L~l~~~~~~ 94 (319)
T cd00116 82 GLQELDLSDNALG 94 (319)
T ss_pred ceeEEEccCCCCC
Confidence 6666666666654
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=9.2e-19 Score=172.81 Aligned_cols=180 Identities=27% Similarity=0.262 Sum_probs=105.8
Q ss_pred EEEcccCcCc-cccCcccc-CcccCeEeccCCcCCCc----cchhhcCCCCCCEEEcccCcCCC------CCCccCCCCC
Q 008628 77 YLNLSNNSLS-GQIPQCLG-NSTLETLDLRMNNFQGT----IPQTYAKGCNLSYLRLSGNHLEG------PLPPSLINCV 144 (559)
Q Consensus 77 ~L~L~~n~~~-~~~~~~~~-~~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~L~~n~~~~------~~~~~l~~l~ 144 (559)
.|+|..+.+. ......+. +..|+.|+++++.++.. ++..+...+++++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4667777775 33444444 77799999999988543 45556677889999999887762 2234567788
Q ss_pred CccEEEeeCCcCCcccchhccCCCC---CCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCC-CCccEE
Q 008628 145 KLHFLDVGNNNLSGPIPEYLGNSTS---LSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKS-CVLVSL 220 (559)
Q Consensus 145 ~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~L 220 (559)
+|++|++++|.+....+..+..+.+ |+.|++++|.+.+.... .+...+..+ ++|+.|
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~-------------------~l~~~l~~~~~~L~~L 142 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR-------------------LLAKGLKDLPPALEKL 142 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHH-------------------HHHHHHHhCCCCceEE
Confidence 9999999999887655555555444 77777777766531111 112223333 455555
Q ss_pred EccCCccccC----CCccccCCCCCcEEEeecCccCcc----cchhhcCCCCCcEEEcccccc
Q 008628 221 NLNGNRLEGP----LPPSLVNCRHLEVIDVGNNQINET----FPHWLDVLPELQVLTLRSNRF 275 (559)
Q Consensus 221 ~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l 275 (559)
++++|.+++. ++..+..+++|++|++++|.+++. ++..+...++|++|++++|.+
T Consensus 143 ~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred EcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence 5555555421 122344445566666666555431 122233344555555555544
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=1.9e-18 Score=142.81 Aligned_cols=157 Identities=29% Similarity=0.387 Sum_probs=98.1
Q ss_pred CCCccCEEECCCCCCCCCCcccc--cCCcEEEccCCcccccCCC--CCCCccEEEeeeccCCcccCccCCCCCCCCEEEc
Q 008628 5 GVHTLYFLDLSRNFLTSIDHLPW--KNLEYLTLDSNLLQGSLPD--LPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNL 80 (559)
Q Consensus 5 ~l~~L~~L~ls~n~~~~i~~~~~--~~L~~L~Ls~n~~~~~~~~--~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 80 (559)
++.+++.|.||+|+++.+|..+. .+|+.|++++|++....+. .++.|+.|++..|.+. ..|..|+.++.|++||+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 34556667777777776666665 6777777777776654332 2336666666666665 66666677777777777
Q ss_pred ccCcCcc-ccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCc
Q 008628 81 SNNSLSG-QIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSG 158 (559)
Q Consensus 81 ~~n~~~~-~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 158 (559)
.+|++.. .+|..|. ++.|+.|+|++|.+. .+|..++++++|+.|.+.+|.+. .+|..++.++.|++|++.+|+++
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~- 186 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT- 186 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-
Confidence 7666543 3454444 666666666666666 55666666666666666666665 56666666666666666666665
Q ss_pred ccchhcc
Q 008628 159 PIPEYLG 165 (559)
Q Consensus 159 ~~~~~~~ 165 (559)
.+|..++
T Consensus 187 vlppel~ 193 (264)
T KOG0617|consen 187 VLPPELA 193 (264)
T ss_pred ecChhhh
Confidence 3343333
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.62 E-value=7.5e-16 Score=163.22 Aligned_cols=118 Identities=37% Similarity=0.645 Sum_probs=106.4
Q ss_pred cccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEeCc
Q 008628 357 TFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLS 436 (559)
Q Consensus 357 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~ 436 (559)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..++.+++|+.|+|++|.+++.+|..+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCC--CCCccCCccccCCCCCCCCCCCCCCC
Q 008628 437 NNQLEGPIPEGP--QFNTFANDSYSGNSGLCGFPLSKSCS 474 (559)
Q Consensus 437 ~n~l~~~~p~~~--~~~~~~~~~~~~n~~lc~~~~~~~c~ 474 (559)
+|+++|.+|... .+.......+.+|+.+|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999752 12334566789999999988766674
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=3.1e-17 Score=135.67 Aligned_cols=158 Identities=29% Similarity=0.397 Sum_probs=81.2
Q ss_pred CCCCCCEEEcccCcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEE
Q 008628 71 NLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFL 149 (559)
Q Consensus 71 ~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 149 (559)
++.+.+.|.+|+|.++ .+|+.+. +.+|+.|++++|.+. .+|..++.+++|+.|+++-|.+. ++|..|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 3444455555555554 3333333 555555555555554 44444555555555555555444 445555555555555
Q ss_pred EeeCCcCCc-ccchhccCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccc
Q 008628 150 DVGNNNLSG-PIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLE 228 (559)
Q Consensus 150 ~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~ 228 (559)
|+.+|.+.. .+|..|..++. |+.|++++|.+. .+|...+++++|+.|.+..|.+-
T Consensus 108 dltynnl~e~~lpgnff~m~t-----------------------lralyl~dndfe-~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTT-----------------------LRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred hccccccccccCCcchhHHHH-----------------------HHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh
Confidence 555444432 23333333333 555555555554 55555566666666666666555
Q ss_pred cCCCccccCCCCCcEEEeecCccCcccc
Q 008628 229 GPLPPSLVNCRHLEVIDVGNNQINETFP 256 (559)
Q Consensus 229 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 256 (559)
..|..++.+..|++|++.+|+++...|
T Consensus 164 -~lpkeig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 164 -SLPKEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred -hCcHHHHHHHHHHHHhcccceeeecCh
Confidence 455566666666666666666654333
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.31 E-value=1e-11 Score=131.90 Aligned_cols=114 Identities=32% Similarity=0.489 Sum_probs=100.7
Q ss_pred CceEEEccCccceeecChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccc
Q 008628 290 KLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQ 369 (559)
Q Consensus 290 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~ 369 (559)
.++.|++++|.+.+.+|..+. .+++|+.|+|++|.+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~-------------------------------------------~L~~L~~L~Ls~N~l~ 455 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDIS-------------------------------------------KLRHLQSINLSGNSIR 455 (623)
T ss_pred EEEEEECCCCCccccCCHHHh-------------------------------------------CCCCCCEEECCCCccc
Confidence 377888888888887775532 1789999999999999
Q ss_pred cccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCC-CCCCeEeCcCCccccCCCC
Q 008628 370 GEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASL-NYLSVLNLSNNQLEGPIPE 446 (559)
Q Consensus 370 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~l~~n~l~~~~p~ 446 (559)
+.+|..++.+++|+.|+|++|++++.+|+.++.+++|+.|+|++|.+++.+|..+..+ .++..+++.+|+..|..|.
T Consensus 456 g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 456 GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 9999999999999999999999999999999999999999999999999999988764 4778999999988876653
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=8.4e-12 Score=118.75 Aligned_cols=212 Identities=22% Similarity=0.263 Sum_probs=145.5
Q ss_pred cCCCCccEEEccCCccccCCC-ccccCCCCCcEEEeecCccCcc--cchhhcCCCCCcEEEcccccccccCCCCCCCCCC
Q 008628 212 AKSCVLVSLNLNGNRLEGPLP-PSLVNCRHLEVIDVGNNQINET--FPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPF 288 (559)
Q Consensus 212 ~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 288 (559)
+++.+|+.+.|.++.+..... +....|++++.|||+.|-+... ......++++|+.|+++.|++......... ..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~-~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT-LLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch-hhh
Confidence 456677778887776652211 3566788888888888876642 334456788888888888887644433322 357
Q ss_pred CCceEEEccCccceeecChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCccc
Q 008628 289 PKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRF 368 (559)
Q Consensus 289 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l 368 (559)
+.|+.|.++.|.++..........++++..++...+........ ....+..|++|||++|++
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~------------------~~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT------------------STKILQTLQELDLSNNNL 258 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc------------------hhhhhhHHhhccccCCcc
Confidence 78888888888888666566666777777777666542211111 122378899999999988
Q ss_pred cccc-chhhhcCCCCCEEEccCCcCCCC-CCcc-----ccCCCCCCEEeCCCCcCCcc-CcccccCCCCCCeEeCcCCcc
Q 008628 369 QGEI-SQVLGKLNSLKSLNISHNNLTGG-IPSS-----LRNLTELESLDLSSNKLAGR-IPTQLASLNYLSVLNLSNNQL 440 (559)
Q Consensus 369 ~~~~-~~~~~~l~~L~~L~Ls~n~l~~~-~~~~-----~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~l~~n~l 440 (559)
.+.. -...+.++.|..|+++.|.+..+ .|++ ....++|++|++++|++..- .-..+..+++|+.|.+..|++
T Consensus 259 i~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 259 IDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 7543 13467899999999999998754 3443 35678999999999998631 113456677888888888888
Q ss_pred cc
Q 008628 441 EG 442 (559)
Q Consensus 441 ~~ 442 (559)
+.
T Consensus 339 n~ 340 (505)
T KOG3207|consen 339 NK 340 (505)
T ss_pred cc
Confidence 74
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.14 E-value=2e-12 Score=126.67 Aligned_cols=191 Identities=32% Similarity=0.424 Sum_probs=139.0
Q ss_pred CccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcc
Q 008628 50 HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLS 128 (559)
Q Consensus 50 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 128 (559)
.-...||+.|.+. .+|..++.+..|+.+.+.+|.+. .+|..++ +..|++++|+.|.+. .+|..+..+ -|+.|.++
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~s 151 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVS 151 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEe
Confidence 3446677777777 67777777778888888888776 6777777 788888888888877 556555544 37888888
Q ss_pred cCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcc
Q 008628 129 GNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLP 208 (559)
Q Consensus 129 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 208 (559)
+|+++ .+|..++....|.+||.+.|.+. .+|..++.+.+|+.|++..|++.. +|..+....|..||++.|++. .+|
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~LpLi~lDfScNkis-~iP 227 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSLPLIRLDFSCNKIS-YLP 227 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCCceeeeecccCcee-ecc
Confidence 88887 67888888888888888888887 556778888888888888888874 455555667888888888887 778
Q ss_pred hhhcCCCCccEEEccCCccccCCCccccCCC---CCcEEEeecC
Q 008628 209 QTFAKSCVLVSLNLNGNRLEGPLPPSLVNCR---HLEVIDVGNN 249 (559)
Q Consensus 209 ~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~---~L~~L~l~~n 249 (559)
-.|.++..|++|-|.+|.++ ..|..+...- =.++|+..-|
T Consensus 228 v~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 88888888888888888877 3343332211 1345555555
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.10 E-value=1.2e-10 Score=118.39 Aligned_cols=178 Identities=31% Similarity=0.454 Sum_probs=78.7
Q ss_pred CCCCEEEcccCcCCCCCCccCCCCC-CccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCccc-ccCccCEEE
Q 008628 120 CNLSYLRLSGNHLEGPLPPSLINCV-KLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECL-GNSTLEILD 197 (559)
Q Consensus 120 ~~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~ 197 (559)
..+..|++.+|.+. .++....... +|+.|++++|.+. .+|..+..+++|+.|++++|++.. ++... ....|+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhhee
Confidence 33444444444444 2333333332 4444444444443 222233444444444444444442 22222 222344444
Q ss_pred ccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccc
Q 008628 198 MRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRG 277 (559)
Q Consensus 198 l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 277 (559)
+++|.+. .+|........|+++.+++|.+. ..+..+..+.++..+.+.+|.+... +..++.++++++|++++|+++.
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceeccccccccc
Confidence 4444444 33333333334555555555322 2333444455555555555544321 3344555556666666665543
Q ss_pred cCCCCCCCCCCCCceEEEccCccceeecCh
Q 008628 278 PIGDTKTRVPFPKLRIIDLSYNRFTGVLPI 307 (559)
Q Consensus 278 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 307 (559)
... ...+.+++.|++++|.+....+.
T Consensus 270 i~~----~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 270 ISS----LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccc----ccccCccCEEeccCccccccchh
Confidence 222 24455666666666666554443
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.09 E-value=1.1e-10 Score=118.68 Aligned_cols=198 Identities=34% Similarity=0.449 Sum_probs=136.4
Q ss_pred EEEcccCcCccccCccccCcccCeEeccCCcCCCccchhhcCCC-CCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCc
Q 008628 77 YLNLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGC-NLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNN 155 (559)
Q Consensus 77 ~L~L~~n~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 155 (559)
.+++..+.+..........+.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..++.+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 466666666433333333566777777777777 4444455553 7777777777777 455566777778888888887
Q ss_pred CCcccchhccCCCCCCEEEccCCccccccCcccccCc-cCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCcc
Q 008628 156 LSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNST-LEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPS 234 (559)
Q Consensus 156 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~ 234 (559)
+. .+|...+..+.|+.|++++|++. .+|....... |+++.+++|... ..+..+..+.++..+.+.+|++.. .+..
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~ 250 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPES 250 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccch
Confidence 77 34444446777778888888777 4455444444 888888888543 456667777788888888887763 3567
Q ss_pred ccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCC
Q 008628 235 LVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDT 282 (559)
Q Consensus 235 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 282 (559)
++.+++++.|++++|.++.... +..+.+++.|++++|.+....+..
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred hccccccceecccccccccccc--ccccCccCEEeccCccccccchhh
Confidence 7778888888888888876544 778888888999888877655444
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.05 E-value=3.7e-11 Score=111.39 Aligned_cols=155 Identities=28% Similarity=0.318 Sum_probs=69.0
Q ss_pred CCCCCCccEEEeeCCcCCcccch----hccCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCCC
Q 008628 140 LINCVKLHFLDVGNNNLSGPIPE----YLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSC 215 (559)
Q Consensus 140 l~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 215 (559)
+..++.|++|+||+|.+....+. -+.++..|++|.|.+|.+.-.....++. .|..|. .+ .....-+
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~-al~~l~--~~-------kk~~~~~ 157 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR-ALFELA--VN-------KKAASKP 157 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH-HHHHHH--HH-------hccCCCc
Confidence 34455666666666665433222 2345566666666666654111110000 011111 00 1112223
Q ss_pred CccEEEccCCccccC----CCccccCCCCCcEEEeecCccCcc----cchhhcCCCCCcEEEcccccccccCC--CCCCC
Q 008628 216 VLVSLNLNGNRLEGP----LPPSLVNCRHLEVIDVGNNQINET----FPHWLDVLPELQVLTLRSNRFRGPIG--DTKTR 285 (559)
Q Consensus 216 ~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~ 285 (559)
.|+.+...+|++... +...|+..+.|+.+.++.|.|... ....+..+++|+.|+|.+|.++.... -....
T Consensus 158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL 237 (382)
T KOG1909|consen 158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL 237 (382)
T ss_pred ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh
Confidence 445555554443311 112344555666666666655421 22344556666666666665542111 11112
Q ss_pred CCCCCceEEEccCccceee
Q 008628 286 VPFPKLRIIDLSYNRFTGV 304 (559)
Q Consensus 286 ~~l~~L~~L~l~~n~l~~~ 304 (559)
..+++|++|++++|.+...
T Consensus 238 ~s~~~L~El~l~dcll~~~ 256 (382)
T KOG1909|consen 238 SSWPHLRELNLGDCLLENE 256 (382)
T ss_pred cccchheeecccccccccc
Confidence 3345556666666555543
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.05 E-value=1.2e-11 Score=121.43 Aligned_cols=195 Identities=28% Similarity=0.440 Sum_probs=163.0
Q ss_pred CCCCCCEEEcccCcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEE
Q 008628 71 NLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFL 149 (559)
Q Consensus 71 ~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 149 (559)
.+..-...|++.|++. .+|..++ +-.|+.+.|..|.+. .+|..++++..|.+|+++.|+++ .+|..+..++ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 4566678899999997 7888887 899999999999998 78899999999999999999998 7888888887 9999
Q ss_pred EeeCCcCCcccchhccCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCcccc
Q 008628 150 DVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEG 229 (559)
Q Consensus 150 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~ 229 (559)
-+++|+++ .+|..++.+..|..|+.+.|.+....+...+..+|+.|.+..|++. .+|..+..+ .|..||++.|++.
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis- 224 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS- 224 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-
Confidence 99999998 6788889889999999999999865555555566999999999988 566666655 5999999999998
Q ss_pred CCCccccCCCCCcEEEeecCccCcccchhh---cCCCCCcEEEccccc
Q 008628 230 PLPPSLVNCRHLEVIDVGNNQINETFPHWL---DVLPELQVLTLRSNR 274 (559)
Q Consensus 230 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~L~~n~ 274 (559)
.+|-.|..|+.|++|-|.+|.+..- |..+ +...=.++|+..-|+
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLqSP-PAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQSP-PAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCCCC-hHHHHhccceeeeeeecchhcc
Confidence 7899999999999999999998653 3333 234445788887775
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=3.1e-10 Score=98.75 Aligned_cols=123 Identities=24% Similarity=0.239 Sum_probs=41.6
Q ss_pred CccEEEeeeccCCcccCccCC-CCCCCCEEEcccCcCccccCccccCcccCeEeccCCcCCCccchhhcCCCCCCEEEcc
Q 008628 50 HMVELLISNNSLTGEIPSSFC-NLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLS 128 (559)
Q Consensus 50 ~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 128 (559)
++++|+|++|.|+.+ ..++ .+.+|+.|++++|.+. .++..-.+++|++|++++|.++...+.....+++|++|+++
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCc-cccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 455666666666532 1233 4566777777777765 34433336777777777777764433222456777777777
Q ss_pred cCcCCCC-CCccCCCCCCccEEEeeCCcCCccc---chhccCCCCCCEEEc
Q 008628 129 GNHLEGP-LPPSLINCVKLHFLDVGNNNLSGPI---PEYLGNSTSLSFLNV 175 (559)
Q Consensus 129 ~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l 175 (559)
+|++... .-..+..+++|+.|++.+|.+.... ...+..+|+|+.||-
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 7776532 1144566777777777777776331 123566777777764
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=4.5e-11 Score=108.29 Aligned_cols=129 Identities=26% Similarity=0.282 Sum_probs=91.3
Q ss_pred CCCCCCEEEcccCcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEE
Q 008628 71 NLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFL 149 (559)
Q Consensus 71 ~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 149 (559)
..+.|+.+|||+|.|+ .+..+.. .++++.|++++|.+... ..+..+.+|+.|||++|.++ .+..+-.++-++++|
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 3567888888888886 6666666 78888888888888744 33777888888888888777 344444567778888
Q ss_pred EeeCCcCCcccchhccCCCCCCEEEccCCccccc-cCcccccCc-cCEEEccCCcCCC
Q 008628 150 DVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGP-IPECLGNST-LEILDMRMNKFSG 205 (559)
Q Consensus 150 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~-L~~L~l~~n~~~~ 205 (559)
.++.|.+... ..+.++-+|..|++.+|++... ....++... |+.+.+.+|.+.+
T Consensus 358 ~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 358 KLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 8888877643 4566777788888888887632 112334444 7888888887764
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=6.4e-11 Score=112.82 Aligned_cols=202 Identities=23% Similarity=0.200 Sum_probs=92.9
Q ss_pred cCCcEEEccCCccccc----CCCCCCCccEEEeeeccCCc--ccCccCCCCCCCCEEEcccCcCccccCcccc--CcccC
Q 008628 28 KNLEYLTLDSNLLQGS----LPDLPPHMVELLISNNSLTG--EIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG--NSTLE 99 (559)
Q Consensus 28 ~~L~~L~Ls~n~~~~~----~~~~~~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~--~~~L~ 99 (559)
++|+.+.|.++.+... ....+++++.|||+.|-+.. .+......+++|+.|+++.|.+......... ++.|+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 4455555554443321 11223355555555554432 1112233455555555555554322222222 45555
Q ss_pred eEeccCCcCCCc-cchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCccc-chhccCCCCCCEEEccC
Q 008628 100 TLDLRMNNFQGT-IPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPI-PEYLGNSTSLSFLNVRN 177 (559)
Q Consensus 100 ~L~L~~n~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~ 177 (559)
.|.++.|.++-. +-.....+++|+.|++..|...........-+..|++|||++|.+.... -...+.++.|..|+++.
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc
Confidence 555555555421 1122344555555555555322122222334455555555555544211 02234555555555555
Q ss_pred Cccccc-cCcc------cccCccCEEEccCCcCCC-CcchhhcCCCCccEEEccCCcccc
Q 008628 178 NSLSGP-IPEC------LGNSTLEILDMRMNKFSG-SLPQTFAKSCVLVSLNLNGNRLEG 229 (559)
Q Consensus 178 n~l~~~-~~~~------~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~L~~n~~~~ 229 (559)
+.+... .|+. ....+|+.|++..|.+.. ..-..+..+++|+.|.+..|.++.
T Consensus 281 tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 281 TGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 555431 1221 222346677777766631 122344556677777777777763
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.00 E-value=4.3e-11 Score=110.92 Aligned_cols=86 Identities=26% Similarity=0.373 Sum_probs=52.1
Q ss_pred hccccEEEcCCcccccc----cchhhhcCCCCCEEEccCCcCCCCCCccc-----cCCCCCCEEeCCCCcCCc----cCc
Q 008628 355 LTTFATIDLSSNRFQGE----ISQVLGKLNSLKSLNISHNNLTGGIPSSL-----RNLTELESLDLSSNKLAG----RIP 421 (559)
Q Consensus 355 l~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~----~~p 421 (559)
+++|+.|||.+|-++.. +...++.+++|++|++++|.+.......| ...++|+.|.+.+|.++. .+.
T Consensus 212 ~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la 291 (382)
T KOG1909|consen 212 CPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALA 291 (382)
T ss_pred CCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHH
Confidence 45555566665555433 23445666777777777777665443332 235677777777777764 122
Q ss_pred ccccCCCCCCeEeCcCCcc
Q 008628 422 TQLASLNYLSVLNLSNNQL 440 (559)
Q Consensus 422 ~~l~~l~~L~~L~l~~n~l 440 (559)
......+.|..|+|++|.+
T Consensus 292 ~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 292 ACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhcchhhHHhcCCcccc
Confidence 3345567788888888877
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=8.6e-11 Score=106.50 Aligned_cols=108 Identities=23% Similarity=0.267 Sum_probs=60.1
Q ss_pred cCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEccc
Q 008628 193 LEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRS 272 (559)
Q Consensus 193 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 272 (559)
++.|++++|.+. .. ..+..+++|+.||+++|.++. ...+-..+-+++.|.+++|.|.+. +.+.++.+|..|++++
T Consensus 309 ir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 309 LRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSS 383 (490)
T ss_pred eeEEecccccee-ee-hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccc
Confidence 455555555444 11 225556666666666666552 223333455666666666665432 2355666667777777
Q ss_pred ccccccCCCCCCCCCCCCceEEEccCccceeecC
Q 008628 273 NRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLP 306 (559)
Q Consensus 273 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 306 (559)
|++... ......+++|.|+++.+.+|++.+...
T Consensus 384 N~Ie~l-deV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 384 NQIEEL-DEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred cchhhH-HHhcccccccHHHHHhhcCCCccccch
Confidence 766421 222233567777777777777765543
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=6.7e-10 Score=96.69 Aligned_cols=110 Identities=25% Similarity=0.331 Sum_probs=37.8
Q ss_pred cCccCEEEccCCcCCCCcchhhc-CCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEE
Q 008628 190 NSTLEILDMRMNKFSGSLPQTFA-KSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVL 268 (559)
Q Consensus 190 ~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 268 (559)
...+++|+|.+|.++. +. .+. .+.+|+.|++++|.++.. +.+..+++|++|++++|.|+...+.....+++|++|
T Consensus 18 ~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccc-cc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 3346666666666652 22 233 456777888888877743 246677888888888888876533322457888888
Q ss_pred EcccccccccCCCCCCCCCCCCceEEEccCccceee
Q 008628 269 TLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGV 304 (559)
Q Consensus 269 ~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 304 (559)
++++|++... ........+++|+.|++.+|+++..
T Consensus 94 ~L~~N~I~~l-~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 94 YLSNNKISDL-NELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp E-TTS---SC-CCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred ECcCCcCCCh-HHhHHHHcCCCcceeeccCCcccch
Confidence 8888887643 2333445688888888888887643
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.99 E-value=5.2e-10 Score=121.53 Aligned_cols=126 Identities=26% Similarity=0.304 Sum_probs=79.6
Q ss_pred CccEEEeeeccCCcccCccCCCCCCCCEEEcccCc--CccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEE
Q 008628 50 HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNS--LSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLR 126 (559)
Q Consensus 50 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~--~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 126 (559)
..+.+.+-+|.+. .++... .+++|++|-+.+|. +......+|. ++.|+.|||++|.-.+.+|..++.+-+|++|+
T Consensus 524 ~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred heeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 5666666666665 333332 34467777777764 3322222333 77777777777666667777777777777777
Q ss_pred cccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCC
Q 008628 127 LSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNN 178 (559)
Q Consensus 127 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 178 (559)
++++.+. .+|..+++++.|.+|++..+.....+|.....+++|++|.+...
T Consensus 602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 7777776 67777777777777777766554455555556777777766543
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=5.4e-10 Score=79.86 Aligned_cols=59 Identities=46% Similarity=0.626 Sum_probs=30.0
Q ss_pred CCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEeCcCCc
Q 008628 381 SLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQ 439 (559)
Q Consensus 381 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~ 439 (559)
+|++|++++|+++...++.|.++++|++|++++|.+....|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34455555555554444455555555555555555554444455555555555555554
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.89 E-value=1.1e-09 Score=78.23 Aligned_cols=61 Identities=36% Similarity=0.557 Sum_probs=57.5
Q ss_pred ccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcC
Q 008628 356 TTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKL 416 (559)
Q Consensus 356 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 416 (559)
++|++|++++|+++...+..|.++++|++|++++|.++...+++|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4689999999999988888999999999999999999999999999999999999999975
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.86 E-value=2.1e-10 Score=116.66 Aligned_cols=266 Identities=26% Similarity=0.288 Sum_probs=165.9
Q ss_pred cCCcEEEccCCcccccCC--CCCCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCeEecc
Q 008628 28 KNLEYLTLDSNLLQGSLP--DLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLR 104 (559)
Q Consensus 28 ~~L~~L~Ls~n~~~~~~~--~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~ 104 (559)
+.++.++...+.....-- ..+..++.++++.|.+.. .-..+..+++|+.|++.+|.+. .+...+. +.+|++|+++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls 126 (414)
T KOG0531|consen 49 SDLEEIDLIFNLDGSDEDLVESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLS 126 (414)
T ss_pred chhhhhcchhccccchhhhHHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheecc
Confidence 444555555443332111 133466777788887773 3344677888888888888887 3444244 8888888888
Q ss_pred CCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccc-hhccCCCCCCEEEccCCccccc
Q 008628 105 MNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIP-EYLGNSTSLSFLNVRNNSLSGP 183 (559)
Q Consensus 105 ~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~ 183 (559)
+|.|+... .+..++.|+.|++++|.+... ..+..++.|+.+++++|++...-+ . ...+.+++.+++.+|.+..
T Consensus 127 ~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~- 200 (414)
T KOG0531|consen 127 FNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE- 200 (414)
T ss_pred cccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc-
Confidence 88887553 356677788888888888733 456668888888888888875433 2 4677788888888887763
Q ss_pred cCcccccCccCEEEccCCcCCCCcchhhcCCC--CccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcC
Q 008628 184 IPECLGNSTLEILDMRMNKFSGSLPQTFAKSC--VLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDV 261 (559)
Q Consensus 184 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 261 (559)
+...-....+..+++..|.++..-+ +.... +|+.+++++|++.. .+..+..+..+..+++.+|.+...- .+..
T Consensus 201 i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~ 275 (414)
T KOG0531|consen 201 IEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLE--GLER 275 (414)
T ss_pred ccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhccccccc--cccc
Confidence 2222222224444666676652211 11222 37888888888773 3356667778888888888775432 2445
Q ss_pred CCCCcEEEcccccccccCCCCC--CCCCCCCceEEEccCccceeecC
Q 008628 262 LPELQVLTLRSNRFRGPIGDTK--TRVPFPKLRIIDLSYNRFTGVLP 306 (559)
Q Consensus 262 l~~L~~L~L~~n~l~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~ 306 (559)
.+.+..+....+++........ .....+.++.+.+..|+.....+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 276 LPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 5666777777777653221111 12445677777777777665433
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.82 E-value=2.5e-09 Score=116.38 Aligned_cols=255 Identities=22% Similarity=0.240 Sum_probs=149.6
Q ss_pred CCCCcccc-cCCcEEEccCCcccccC-CCCCCCccEEEeeecc--CCcccCccCCCCCCCCEEEcccCcCccccCcccc-
Q 008628 20 TSIDHLPW-KNLEYLTLDSNLLQGSL-PDLPPHMVELLISNNS--LTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG- 94 (559)
Q Consensus 20 ~~i~~~~~-~~L~~L~Ls~n~~~~~~-~~~~~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~- 94 (559)
.++|.... ...+...+-+|.+.... ....+.|+.|-+..|. +.......|..++.|++|||++|.-.+.+|..++
T Consensus 514 ~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 514 SEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE 593 (889)
T ss_pred cccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh
Confidence 33444333 67777777777665322 1222378888888875 4434344477789999999998866678888888
Q ss_pred CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCC--cccchhccCCCCCCE
Q 008628 95 NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLS--GPIPEYLGNSTSLSF 172 (559)
Q Consensus 95 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~ 172 (559)
+-+|++|+++++.+. .+|..++++..|.+|++..+.-...+|.....+++|++|.+...... ...-..+..+.+|+.
T Consensus 594 Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ 672 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLEN 672 (889)
T ss_pred hhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhh
Confidence 889999999998888 78888999999999999888766556666666888999888766422 112233445555555
Q ss_pred EEccCCccccccCcccccCc----cCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccC------CCCCc
Q 008628 173 LNVRNNSLSGPIPECLGNST----LEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVN------CRHLE 242 (559)
Q Consensus 173 L~l~~n~l~~~~~~~~~~~~----L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~------l~~L~ 242 (559)
+........ .+........ .+.+.+.++... ..+..+..+.+|+.|.+.++.+.......... .+++.
T Consensus 673 ls~~~~s~~-~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~ 750 (889)
T KOG4658|consen 673 LSITISSVL-LLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLS 750 (889)
T ss_pred heeecchhH-hHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHH
Confidence 554333320 1111111111 223332222222 44556677778888888887765332222111 11222
Q ss_pred EEEeecCccCcccchhhcCCCCCcEEEccccccccc
Q 008628 243 VIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGP 278 (559)
Q Consensus 243 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 278 (559)
.+.+.+|... ..+.+..-.++|+.|.+..+.....
T Consensus 751 ~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 751 KVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLED 785 (889)
T ss_pred HHHhhccccc-cccchhhccCcccEEEEeccccccc
Confidence 2333333211 1222333456777777777665443
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.77 E-value=6.9e-10 Score=112.91 Aligned_cols=261 Identities=23% Similarity=0.215 Sum_probs=169.6
Q ss_pred ccCEEECCCCCCCCCCcc--cccCCcEEEccCCcccccC--CCCCCCccEEEeeeccCCcccCccCCCCCCCCEEEcccC
Q 008628 8 TLYFLDLSRNFLTSIDHL--PWKNLEYLTLDSNLLQGSL--PDLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNN 83 (559)
Q Consensus 8 ~L~~L~ls~n~~~~i~~~--~~~~L~~L~Ls~n~~~~~~--~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 83 (559)
.++.++...+.+...... ....++.+.+..|.+.... ...+.+++.|++.+|.|... ...+..+++|++|++++|
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N 128 (414)
T KOG0531|consen 50 DLEEIDLIFNLDGSDEDLVESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFN 128 (414)
T ss_pred hhhhhcchhccccchhhhHHHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhc-ccchhhhhcchheecccc
Confidence 344455555443322222 3366777777777777522 24455888888888888743 333677889999999999
Q ss_pred cCccccCccccCcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCC-ccCCCCCCccEEEeeCCcCCcccch
Q 008628 84 SLSGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLP-PSLINCVKLHFLDVGNNNLSGPIPE 162 (559)
Q Consensus 84 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~ 162 (559)
.|. .+...-.+..|+.|++++|.+... ..+..+..|+.+++++|.+...-+ . ...+.+++.+.+.+|.+... .
T Consensus 129 ~I~-~i~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~ 202 (414)
T KOG0531|consen 129 KIT-KLEGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--E 202 (414)
T ss_pred ccc-cccchhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--c
Confidence 887 344433466788999999988744 345568888999999998885433 1 47788889999999887643 3
Q ss_pred hccCCCCCCEEEccCCccccccCcccccCc--cCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCC
Q 008628 163 YLGNSTSLSFLNVRNNSLSGPIPECLGNST--LEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRH 240 (559)
Q Consensus 163 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~ 240 (559)
.+..+..+..+++..|.+.. +........ |+.+++++|.+. ..+..+..+..+..+++..|++.... .+.....
T Consensus 203 ~~~~~~~l~~~~l~~n~i~~-~~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~ 278 (414)
T KOG0531|consen 203 GLDLLKKLVLLSLLDNKISK-LEGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPK 278 (414)
T ss_pred chHHHHHHHHhhccccccee-ccCcccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccch
Confidence 34445555556777777763 222222222 788889988877 33356677788888999888876432 2344455
Q ss_pred CcEEEeecCccCcc---cch-hhcCCCCCcEEEcccccccccC
Q 008628 241 LEVIDVGNNQINET---FPH-WLDVLPELQVLTLRSNRFRGPI 279 (559)
Q Consensus 241 L~~L~l~~n~l~~~---~~~-~~~~l~~L~~L~L~~n~l~~~~ 279 (559)
+..+....+.+... ... .....+.++...+..|......
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 279 LSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred HHHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence 66666666655421 111 1446677888888888776443
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=5e-09 Score=95.20 Aligned_cols=84 Identities=20% Similarity=0.258 Sum_probs=47.4
Q ss_pred cCEEEccCCcCCC-CcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecC-ccCccc-chhhcCCCCCcEEE
Q 008628 193 LEILDMRMNKFSG-SLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNN-QINETF-PHWLDVLPELQVLT 269 (559)
Q Consensus 193 L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~ 269 (559)
++.+||+...++. .....++.+.+|+.|.+.++.+.+.+...+..-.+|+.|+++.| .++..- .-.+..++.|.+|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 6666666655542 23344556666666666666666555555666666666666665 333211 12234566666666
Q ss_pred ccccccc
Q 008628 270 LRSNRFR 276 (559)
Q Consensus 270 L~~n~l~ 276 (559)
++.|.+.
T Consensus 267 lsWc~l~ 273 (419)
T KOG2120|consen 267 LSWCFLF 273 (419)
T ss_pred chHhhcc
Confidence 6666544
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=4.8e-09 Score=95.33 Aligned_cols=180 Identities=18% Similarity=0.167 Sum_probs=117.3
Q ss_pred CccEEEccCCccccC-CCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEE
Q 008628 216 VLVSLNLNGNRLEGP-LPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRII 294 (559)
Q Consensus 216 ~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 294 (559)
.|+++||+...++.. .-..+..|..|+.|.+.++.+.+.+...+++-.+|+.|+++.+.-.........+..++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 588899988776632 2235667888999999999998888888888899999999887532222222234567888888
Q ss_pred EccCccceeecChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCccc---ccc
Q 008628 295 DLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRF---QGE 371 (559)
Q Consensus 295 ~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l---~~~ 371 (559)
+++.|.+......... ...-..++.|+++++.- ...
T Consensus 266 NlsWc~l~~~~Vtv~V-----------------------------------------~hise~l~~LNlsG~rrnl~~sh 304 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAV-----------------------------------------AHISETLTQLNLSGYRRNLQKSH 304 (419)
T ss_pred CchHhhccchhhhHHH-----------------------------------------hhhchhhhhhhhhhhHhhhhhhH
Confidence 8888776533211111 01134666777776531 112
Q ss_pred cchhhhcCCCCCEEEccCCc-CCCCCCccccCCCCCCEEeCCCCcCCccCccc---ccCCCCCCeEeCcCC
Q 008628 372 ISQVLGKLNSLKSLNISHNN-LTGGIPSSLRNLTELESLDLSSNKLAGRIPTQ---LASLNYLSVLNLSNN 438 (559)
Q Consensus 372 ~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~l~~n 438 (559)
+......+++|.+|||++|. ++...-..|-.++.|++|.+++|... +|.. +...|+|.+|++.++
T Consensus 305 ~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 305 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 22334568888888888875 33322234556788888888888753 4443 456788888887665
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.36 E-value=1.3e-08 Score=103.13 Aligned_cols=105 Identities=28% Similarity=0.319 Sum_probs=52.3
Q ss_pred hccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCcc-ccCCCCCCEEeCCCCcCCccCcccccCCCCCCeE
Q 008628 355 LTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSS-LRNLTELESLDLSSNKLAGRIPTQLASLNYLSVL 433 (559)
Q Consensus 355 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 433 (559)
++.++.|||++|+++... .+..|+.|++|||++|.++ .+|.. -..+ .|..|++++|.++.. .++.+|.+|+.|
T Consensus 186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~LksL~~L 259 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL--RGIENLKSLYGL 259 (1096)
T ss_pred HHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhh--hhHHhhhhhhcc
Confidence 455566666666665432 4555666666666666655 22221 1122 266666666655533 245556666666
Q ss_pred eCcCCccccCCCC--CCCCCccCCccccCCCCCC
Q 008628 434 NLSNNQLEGPIPE--GPQFNTFANDSYSGNSGLC 465 (559)
Q Consensus 434 ~l~~n~l~~~~p~--~~~~~~~~~~~~~~n~~lc 465 (559)
|+++|-+.+.-.- .+.+..+..+.+.|||--|
T Consensus 260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred chhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 6666655432211 1222333444455665555
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=2.8e-07 Score=84.12 Aligned_cols=81 Identities=25% Similarity=0.328 Sum_probs=48.0
Q ss_pred cCEEEccCCcCCC--CcchhhcCCCCccEEEccCCccccCCCccc-cCCCCCcEEEeecCccCc-ccchhhcCCCCCcEE
Q 008628 193 LEILDMRMNKFSG--SLPQTFAKSCVLVSLNLNGNRLEGPLPPSL-VNCRHLEVIDVGNNQINE-TFPHWLDVLPELQVL 268 (559)
Q Consensus 193 L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l-~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L 268 (559)
++++||.+|.+++ .+...+.++|.|+.|+++.|.+...+. .+ ....+|++|.+.+..+.= .....+..+|.+++|
T Consensus 73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 6666666666652 334455677777777777777664322 22 345577777777765542 223344566666677
Q ss_pred Eccccc
Q 008628 269 TLRSNR 274 (559)
Q Consensus 269 ~L~~n~ 274 (559)
.++.|.
T Consensus 152 HmS~N~ 157 (418)
T KOG2982|consen 152 HMSDNS 157 (418)
T ss_pred hhccch
Confidence 666664
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.31 E-value=3e-08 Score=100.62 Aligned_cols=192 Identities=22% Similarity=0.177 Sum_probs=122.0
Q ss_pred CCCCCCEEEcccCcCCCCC-CccCCCCCCccEEEeeCCcCCcccchhccCC-CCCCEEEccCCccc----------cccC
Q 008628 118 KGCNLSYLRLSGNHLEGPL-PPSLINCVKLHFLDVGNNNLSGPIPEYLGNS-TSLSFLNVRNNSLS----------GPIP 185 (559)
Q Consensus 118 ~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~----------~~~~ 185 (559)
-+++++.|.+-.-.-.+.. |-.+..+.+|++|.+.++.+... ..+..+ ..|++|.- +|.+. |.+.
T Consensus 82 ~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ 158 (1096)
T KOG1859|consen 82 FLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLIC-HNSLDALRHVFASCGGDIS 158 (1096)
T ss_pred HHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccc
Confidence 3455555554433222211 55677889999999999987631 111111 22333322 11111 2222
Q ss_pred cccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCC
Q 008628 186 ECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPEL 265 (559)
Q Consensus 186 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 265 (559)
..+..-.|...+.++|.+. ....++.-++.++.|+|++|+++... .+..++.|+.|||+.|.+.....-...+++ |
T Consensus 159 ns~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L 234 (1096)
T KOG1859|consen 159 NSPVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-L 234 (1096)
T ss_pred cchhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-h
Confidence 3333334888888999887 67788888899999999999998543 788899999999999988654433333444 9
Q ss_pred cEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecChHhhhccccccccc
Q 008628 266 QVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGD 320 (559)
Q Consensus 266 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~ 320 (559)
+.|.+++|.++... ...++.+|+.||+++|-+++.--..++..+..|..+.
T Consensus 235 ~~L~lrnN~l~tL~----gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~ 285 (1096)
T KOG1859|consen 235 QLLNLRNNALTTLR----GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLW 285 (1096)
T ss_pred eeeeecccHHHhhh----hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHh
Confidence 99999999886432 2256889999999999887654444444444443333
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=8.1e-07 Score=81.14 Aligned_cols=227 Identities=17% Similarity=0.153 Sum_probs=127.2
Q ss_pred CCCCCCCCEEEcccCcCccccC-cccc--CcccCeEeccCCcCCCc--cchhhcCCCCCCEEEcccCcCCCCCCccCCCC
Q 008628 69 FCNLSSIQYLNLSNNSLSGQIP-QCLG--NSTLETLDLRMNNFQGT--IPQTYAKGCNLSYLRLSGNHLEGPLPPSLINC 143 (559)
Q Consensus 69 ~~~l~~L~~L~L~~n~~~~~~~-~~~~--~~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l 143 (559)
+....-++.|.+.++.|...-. ..++ ++.++.+||.+|.++.. +...+.+++.|+.|+++.|++...+...=...
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~ 120 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPL 120 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccc
Confidence 3334445555666665542111 1222 66777777777777632 33445677777777777777663322111345
Q ss_pred CCccEEEeeCCcCCcc-cchhccCCCCCCEEEccCCcccc--ccCcccccC--ccCEEEccCCcCCC--CcchhhcCCCC
Q 008628 144 VKLHFLDVGNNNLSGP-IPEYLGNSTSLSFLNVRNNSLSG--PIPECLGNS--TLEILDMRMNKFSG--SLPQTFAKSCV 216 (559)
Q Consensus 144 ~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~--~L~~L~l~~n~~~~--~~~~~~~~~~~ 216 (559)
.+|+.|-|.+..+.-. ....+..+|.++.|.++.|.+.. ...++.... .+.+++...|.... .....-.-+++
T Consensus 121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN 200 (418)
T ss_pred cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence 6777777777655321 22345567777777777774321 111222222 25555555553210 01111223567
Q ss_pred ccEEEccCCccccCC-CccccCCCCCcEEEeecCccCcc-cchhhcCCCCCcEEEcccccccccCCC----CCCCCCCCC
Q 008628 217 LVSLNLNGNRLEGPL-PPSLVNCRHLEVIDVGNNQINET-FPHWLDVLPELQVLTLRSNRFRGPIGD----TKTRVPFPK 290 (559)
Q Consensus 217 L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~~l~~ 290 (559)
+..+.+..|++.... .+.+...+.+..|+++.++|... -.+.+.+++.|..|.++++++...+.. ......+++
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~ 280 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTK 280 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccc
Confidence 777888888765432 23556677788888988888653 234577888999999999887644322 222234555
Q ss_pred ceEEE
Q 008628 291 LRIID 295 (559)
Q Consensus 291 L~~L~ 295 (559)
++.|+
T Consensus 281 v~vLN 285 (418)
T KOG2982|consen 281 VQVLN 285 (418)
T ss_pred eEEec
Confidence 55554
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.20 E-value=3.1e-07 Score=82.69 Aligned_cols=112 Identities=18% Similarity=0.146 Sum_probs=63.6
Q ss_pred ccCEEEccCCcCCCCc----chhhcCCCCccEEEccCCccccCCC-----ccccCCCCCcEEEeecCccCcc----cchh
Q 008628 192 TLEILDMRMNKFSGSL----PQTFAKSCVLVSLNLNGNRLEGPLP-----PSLVNCRHLEVIDVGNNQINET----FPHW 258 (559)
Q Consensus 192 ~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~L~~n~~~~~~~-----~~l~~l~~L~~L~l~~n~l~~~----~~~~ 258 (559)
.|+......|++..-. ...+....+|+.+.+..|.|....- ..+.-+.+|+.||+.+|.++-. +..+
T Consensus 158 ~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~a 237 (388)
T COG5238 158 KLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADA 237 (388)
T ss_pred CceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHH
Confidence 3777777777665211 1223333567777777776652211 1233456788888888866533 2334
Q ss_pred hcCCCCCcEEEcccccccccCCC----CCCCCCCCCceEEEccCcccee
Q 008628 259 LDVLPELQVLTLRSNRFRGPIGD----TKTRVPFPKLRIIDLSYNRFTG 303 (559)
Q Consensus 259 ~~~l~~L~~L~L~~n~l~~~~~~----~~~~~~l~~L~~L~l~~n~l~~ 303 (559)
+..++.|++|.+.+|-++..-.. .+.-...|+|+.|...+|...+
T Consensus 238 l~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 238 LCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 45667778888888776532211 1111235777777777776654
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.16 E-value=8.5e-06 Score=79.99 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=23.1
Q ss_pred CccCEEECCCCCCCCCCcccccCCcEEEccCCcccccCCCCCC-CccEEEeeec
Q 008628 7 HTLYFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLPP-HMVELLISNN 59 (559)
Q Consensus 7 ~~L~~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~~~~~~~~-~L~~L~L~~n 59 (559)
.+++.|++++|.++.+| .+.++|++|++++|.-...+|+.++ +|+.|++++|
T Consensus 52 ~~l~~L~Is~c~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~C 104 (426)
T PRK15386 52 RASGRLYIKDCDIESLP-VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHC 104 (426)
T ss_pred cCCCEEEeCCCCCcccC-CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCc
Confidence 44555555555555554 2334455555554332223332222 4444444444
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.11 E-value=6.1e-07 Score=80.83 Aligned_cols=188 Identities=19% Similarity=0.156 Sum_probs=103.5
Q ss_pred hcCCCCCCEEEcccCcCCCCCCc----cCCCCCCccEEEeeCCcCCcccchh-------------ccCCCCCCEEEccCC
Q 008628 116 YAKGCNLSYLRLSGNHLEGPLPP----SLINCVKLHFLDVGNNNLSGPIPEY-------------LGNSTSLSFLNVRNN 178 (559)
Q Consensus 116 ~~~l~~L~~L~L~~n~~~~~~~~----~l~~l~~L~~L~l~~n~l~~~~~~~-------------~~~l~~L~~L~l~~n 178 (559)
+.+|+.|+..+|++|.+....|. .+++.+.|.+|.+++|.+....... ..+-|.|++.....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 34455555555555555443332 2344455566666555443111111 123456666666666
Q ss_pred ccccccCc----ccccC-ccCEEEccCCcCCCC-----cchhhcCCCCccEEEccCCccccCC----CccccCCCCCcEE
Q 008628 179 SLSGPIPE----CLGNS-TLEILDMRMNKFSGS-----LPQTFAKSCVLVSLNLNGNRLEGPL----PPSLVNCRHLEVI 244 (559)
Q Consensus 179 ~l~~~~~~----~~~~~-~L~~L~l~~n~~~~~-----~~~~~~~~~~L~~L~L~~n~~~~~~----~~~l~~l~~L~~L 244 (559)
++..-... .+... .|+++.+.+|.|.-. +-..+..+.+|+.|+++.|.++... ...+...+.|++|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 65421111 11112 366777777765421 1223445678888888888776432 2344556678888
Q ss_pred EeecCccCcccchhh----c--CCCCCcEEEcccccccccCCCC-----CCCCCCCCceEEEccCcccee
Q 008628 245 DVGNNQINETFPHWL----D--VLPELQVLTLRSNRFRGPIGDT-----KTRVPFPKLRIIDLSYNRFTG 303 (559)
Q Consensus 245 ~l~~n~l~~~~~~~~----~--~l~~L~~L~L~~n~l~~~~~~~-----~~~~~l~~L~~L~l~~n~l~~ 303 (559)
.+.+|-++......+ . ..++|..|...+|...+.+... +.....|-|..+.+.+|++..
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 888887765433322 2 4578888888888776543322 122346677777777887763
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.99 E-value=2.3e-07 Score=74.78 Aligned_cols=99 Identities=26% Similarity=0.355 Sum_probs=51.4
Q ss_pred cCEEECCCCCCCCCCcccc-----cCCcEEEccCCcccccCCC---CCCCccEEEeeeccCCcccCccCCCCCCCCEEEc
Q 008628 9 LYFLDLSRNFLTSIDHLPW-----KNLEYLTLDSNLLQGSLPD---LPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNL 80 (559)
Q Consensus 9 L~~L~ls~n~~~~i~~~~~-----~~L~~L~Ls~n~~~~~~~~---~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 80 (559)
+..+|||.|.+..+++... ..|+..+|++|.+....+. -++.++.|+|++|.|+ .+|..+..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence 4456666666655554332 4555556666665533221 2234555566666655 44555555666666666
Q ss_pred ccCcCccccCcccc-CcccCeEeccCCcCC
Q 008628 81 SNNSLSGQIPQCLG-NSTLETLDLRMNNFQ 109 (559)
Q Consensus 81 ~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~ 109 (559)
+.|.+. ..|..+. +.++-.|+..+|.+.
T Consensus 108 ~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 108 RFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 666554 3333333 555555555555444
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.90 E-value=4.3e-07 Score=73.27 Aligned_cols=104 Identities=25% Similarity=0.290 Sum_probs=61.6
Q ss_pred CccEEEeeeccCCcccCc---cCCCCCCCCEEEcccCcCccccCcccc--CcccCeEeccCCcCCCccchhhcCCCCCCE
Q 008628 50 HMVELLISNNSLTGEIPS---SFCNLSSIQYLNLSNNSLSGQIPQCLG--NSTLETLDLRMNNFQGTIPQTYAKGCNLSY 124 (559)
Q Consensus 50 ~L~~L~L~~n~i~~~~~~---~~~~l~~L~~L~L~~n~~~~~~~~~~~--~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 124 (559)
.+..++|++|++. -+++ .+....+|+..+|++|.+. .+|..|. .+.++.|++++|.+. .+|..++.++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 4455677777654 2222 2334455666677777665 4555544 456667777777666 45555666666666
Q ss_pred EEcccCcCCCCCCccCCCCCCccEEEeeCCcCC
Q 008628 125 LRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLS 157 (559)
Q Consensus 125 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 157 (559)
|+++.|.+. ..|..+..+.++-.|+..+|.+.
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 666666666 45555555666666666666554
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=1.4e-05 Score=52.07 Aligned_cols=35 Identities=43% Similarity=0.769 Sum_probs=13.4
Q ss_pred CCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCC
Q 008628 382 LKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 417 (559)
Q Consensus 382 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 417 (559)
|++|++++|+++. +|..++++++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 4444444444442 2223444444444444444443
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.84 E-value=5.8e-05 Score=74.26 Aligned_cols=57 Identities=23% Similarity=0.212 Sum_probs=31.2
Q ss_pred hcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccc
Q 008628 211 FAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSN 273 (559)
Q Consensus 211 ~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 273 (559)
+..+.+++.|++++|.++ .+| .-..+|++|.+++|.--..+|+.+ .++|++|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 334566667777766655 233 123356777776653333344433 246677777766
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.78 E-value=2.6e-05 Score=50.86 Aligned_cols=39 Identities=28% Similarity=0.491 Sum_probs=32.4
Q ss_pred ccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCC
Q 008628 356 TTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGG 395 (559)
Q Consensus 356 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 395 (559)
++|++|++++|++++ +|..+++|++|++|++++|+++..
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCCC
Confidence 468999999999995 556799999999999999999843
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.71 E-value=1.4e-05 Score=85.34 Aligned_cols=131 Identities=18% Similarity=0.275 Sum_probs=69.9
Q ss_pred cCCcEEEccCCcccc-----cCCCCCCCccEEEeeeccCCc-ccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCe
Q 008628 28 KNLEYLTLDSNLLQG-----SLPDLPPHMVELLISNNSLTG-EIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLET 100 (559)
Q Consensus 28 ~~L~~L~Ls~n~~~~-----~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~ 100 (559)
.+|++||++|..... .+...+|.|+.|.+++-.+.. .......++++|.+||+|+++++. + ..++ +++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHH
Confidence 566666666643221 222345566666666654431 112334456667777777666652 2 2223 666666
Q ss_pred EeccCCcCCC-ccchhhcCCCCCCEEEcccCcCCCCC--C----ccCCCCCCccEEEeeCCcCCccc
Q 008628 101 LDLRMNNFQG-TIPQTYAKGCNLSYLRLSGNHLEGPL--P----PSLINCVKLHFLDVGNNNLSGPI 160 (559)
Q Consensus 101 L~L~~n~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~--~----~~l~~l~~L~~L~l~~n~l~~~~ 160 (559)
|.+.+-.+.. ..-..+-++++|++||+|........ . ..-..+|+|+.||.+++.+....
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 6666655542 12233456677777777665433211 0 11124678888888877766443
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.65 E-value=8.9e-05 Score=64.35 Aligned_cols=103 Identities=23% Similarity=0.219 Sum_probs=50.9
Q ss_pred CCCEEEcccCcCccccCccccCcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCC-CccCCCCCCccEEEee
Q 008628 74 SIQYLNLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPL-PPSLINCVKLHFLDVG 152 (559)
Q Consensus 74 ~L~~L~L~~n~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~ 152 (559)
+...+||++|++. .++..-.++.|.+|.+.+|.|+.+.|..-..+++|+.|.+.+|.+.... -..+..|+.|++|.+-
T Consensus 43 ~~d~iDLtdNdl~-~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchh-hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 4445555555553 2222222555555555555555555544444555555555555544210 1234456666666666
Q ss_pred CCcCCcccc---hhccCCCCCCEEEccC
Q 008628 153 NNNLSGPIP---EYLGNSTSLSFLNVRN 177 (559)
Q Consensus 153 ~n~l~~~~~---~~~~~l~~L~~L~l~~ 177 (559)
+|.++..-- -.+..+++|++||...
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhh
Confidence 665542211 2345566666666554
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.61 E-value=0.00011 Score=63.87 Aligned_cols=107 Identities=23% Similarity=0.192 Sum_probs=74.8
Q ss_pred cCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCccc-chhhcCCCCCcEEEcc
Q 008628 193 LEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETF-PHWLDVLPELQVLTLR 271 (559)
Q Consensus 193 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~ 271 (559)
...+|+++|.+. -...|..++.|.+|.+++|.|+.+.|.--.-+++|..|.+.+|+|.... ..-+..++.|++|.+-
T Consensus 44 ~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 667788888765 2245667788888888888888766665555678888888888775421 1235678889999998
Q ss_pred cccccccC-CCCCCCCCCCCceEEEccCccc
Q 008628 272 SNRFRGPI-GDTKTRVPFPKLRIIDLSYNRF 301 (559)
Q Consensus 272 ~n~l~~~~-~~~~~~~~l~~L~~L~l~~n~l 301 (559)
+|++.... -..+....+|+|+.||+.+-..
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 88875322 1223345689999999876543
No 60
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.45 E-value=3.8e-06 Score=80.49 Aligned_cols=81 Identities=16% Similarity=0.122 Sum_probs=35.8
Q ss_pred CCCEEEcccCcCccccC-ccc-c-CcccCeEeccCCcC-CCccchhh-cCCCCCCEEEcccCc-CCCCCC-ccCCCCCCc
Q 008628 74 SIQYLNLSNNSLSGQIP-QCL-G-NSTLETLDLRMNNF-QGTIPQTY-AKGCNLSYLRLSGNH-LEGPLP-PSLINCVKL 146 (559)
Q Consensus 74 ~L~~L~L~~n~~~~~~~-~~~-~-~~~L~~L~L~~n~~-~~~~~~~~-~~l~~L~~L~L~~n~-~~~~~~-~~l~~l~~L 146 (559)
.|+.|.+.++.-.+.-+ ..+ . ++++++|.+.+|.. +...-..+ ..+++|++|++..|. ++...- .-...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 45566666654322111 111 1 56666666665542 21111111 345566666665532 221111 122345566
Q ss_pred cEEEeeCC
Q 008628 147 HFLDVGNN 154 (559)
Q Consensus 147 ~~L~l~~n 154 (559)
++|+++++
T Consensus 219 ~~lNlSwc 226 (483)
T KOG4341|consen 219 KYLNLSWC 226 (483)
T ss_pred HHhhhccC
Confidence 66666655
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.38 E-value=4.2e-06 Score=80.19 Aligned_cols=273 Identities=19% Similarity=0.124 Sum_probs=122.8
Q ss_pred cCCcEEEccCCcccc-----cCCCCCCCccEEEeeecc-CCcccCccC-CCCCCCCEEEcccC-cCccccCcccc--Ccc
Q 008628 28 KNLEYLTLDSNLLQG-----SLPDLPPHMVELLISNNS-LTGEIPSSF-CNLSSIQYLNLSNN-SLSGQIPQCLG--NST 97 (559)
Q Consensus 28 ~~L~~L~Ls~n~~~~-----~~~~~~~~L~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~L~~n-~~~~~~~~~~~--~~~ 97 (559)
..|+.|.+.++.-.+ ......+++++|++.++. +++..-..+ ..+++|++|++..| .++...-..+. +++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 456677666665332 112233466666666653 332222222 23677777777774 34432222222 677
Q ss_pred cCeEeccCCcC-CC-ccchhhcCCCCCCEEEcccCcCCCC--CCccCCCCCCccEEEeeCCc-CCcccc-hhccCCCCCC
Q 008628 98 LETLDLRMNNF-QG-TIPQTYAKGCNLSYLRLSGNHLEGP--LPPSLINCVKLHFLDVGNNN-LSGPIP-EYLGNSTSLS 171 (559)
Q Consensus 98 L~~L~L~~n~~-~~-~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~ 171 (559)
|.+++++.|.- .+ .+...+.++..++.+.+.+|.-.+. +-..-+.+.-+..+++..|. ++...- ..-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 77777777652 22 1112234445555555554421110 00011122334444444442 221100 1112345566
Q ss_pred EEEccCCccccccC-ccc--ccCccCEEEccCCc-CCCCcchhh-cCCCCccEEEccCCcccc--CCCccccCCCCCcEE
Q 008628 172 FLNVRNNSLSGPIP-ECL--GNSTLEILDMRMNK-FSGSLPQTF-AKSCVLVSLNLNGNRLEG--PLPPSLVNCRHLEVI 244 (559)
Q Consensus 172 ~L~l~~n~l~~~~~-~~~--~~~~L~~L~l~~n~-~~~~~~~~~-~~~~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L 244 (559)
.|..+++...+..+ ..+ ...+|+.+-++.++ +++.-...+ .+++.|+.+++..+.... .+...-.+++.|+++
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 66666554321111 111 12336666666654 222111112 245567777776664321 112222356667777
Q ss_pred EeecCc-cCccc----chhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccc
Q 008628 245 DVGNNQ-INETF----PHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRF 301 (559)
Q Consensus 245 ~l~~n~-l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 301 (559)
.+++|. +++.. ...-.....|..+.+++++....... .....+++|+.+++-+++-
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L-e~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL-EHLSICRNLERIELIDCQD 438 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH-HHHhhCcccceeeeechhh
Confidence 777663 33221 11122455667777777765422111 1123456777777766643
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.25 E-value=0.00014 Score=77.80 Aligned_cols=58 Identities=24% Similarity=0.276 Sum_probs=24.5
Q ss_pred CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCC-CCCccCCCCCCccEEEeeCC
Q 008628 95 NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEG-PLPPSLINCVKLHFLDVGNN 154 (559)
Q Consensus 95 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n 154 (559)
.++|..||+++++++.. ..++.+++|++|.+.+=.+.. ..-..+.++++|+.||+|..
T Consensus 172 FpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 172 FPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred cCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 44455555555544432 334444444444444433321 11113334444444444443
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.18 E-value=0.0013 Score=54.96 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=21.5
Q ss_pred hhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEc
Q 008628 115 TYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNV 175 (559)
Q Consensus 115 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 175 (559)
.|.++.+|+.+.+.. .+.......|.++++|+.+++.++ +.......|.++++++.+.+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF 65 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccc
Confidence 344455555555543 233233344455555555555443 33333334444444444444
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.09 E-value=0.0016 Score=54.26 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=29.2
Q ss_pred CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEE
Q 008628 95 NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLN 174 (559)
Q Consensus 95 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 174 (559)
+++|+.+.+.. .+.......|.++.+|+.+.+.++ +.......|.++++++.+.+.+ .+.......|..+++|+.+.
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence 44555555543 333334444555555555555443 3323333445554555555543 22222233444444554444
Q ss_pred cc
Q 008628 175 VR 176 (559)
Q Consensus 175 l~ 176 (559)
+.
T Consensus 88 ~~ 89 (129)
T PF13306_consen 88 IP 89 (129)
T ss_dssp ET
T ss_pred cC
Confidence 43
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.59 E-value=0.0014 Score=59.65 Aligned_cols=100 Identities=24% Similarity=0.285 Sum_probs=46.1
Q ss_pred CCCCCEEEcccCcCccccCccccCcccCeEeccCC--cCCCccchhhcCCCCCCEEEcccCcCCCCCCcc---CCCCCCc
Q 008628 72 LSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLRMN--NFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPS---LINCVKL 146 (559)
Q Consensus 72 l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~L~~n--~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~---l~~l~~L 146 (559)
+..|+.|++.+..++ .....-.+++|+.|.++.| .+.+.++.....+++|+++++++|++.. +++ +..+.+|
T Consensus 42 ~~~le~ls~~n~glt-t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLT-TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENL 118 (260)
T ss_pred ccchhhhhhhcccee-ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcch
Confidence 444444444444333 1111112455555555555 3343444444445666666666665541 222 2344455
Q ss_pred cEEEeeCCcCCcccc---hhccCCCCCCEEE
Q 008628 147 HFLDVGNNNLSGPIP---EYLGNSTSLSFLN 174 (559)
Q Consensus 147 ~~L~l~~n~l~~~~~---~~~~~l~~L~~L~ 174 (559)
..|++.+|..+...- ..|.-+++|++|+
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 566666665443111 2344455555554
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.00011 Score=66.93 Aligned_cols=102 Identities=24% Similarity=0.203 Sum_probs=61.3
Q ss_pred CCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceE
Q 008628 214 SCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRI 293 (559)
Q Consensus 214 ~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~ 293 (559)
+.+.++|+..++.++++ .....++.|++|.|+-|.|+..-| +..+++|++|+|..|.+.. +.+.....++|+|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhh
Confidence 34556666666666533 234456777777777777765433 6677777777777777653 222333456777788
Q ss_pred EEccCccceeecChH----hhhccccccccc
Q 008628 294 IDLSYNRFTGVLPIW----YLNGFKAMMHGD 320 (559)
Q Consensus 294 L~l~~n~l~~~~~~~----~~~~l~~l~~~~ 320 (559)
|.|..|+-.|..+.. .+.-+++|+.++
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888777776655432 233344444444
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.00037 Score=63.57 Aligned_cols=81 Identities=21% Similarity=0.120 Sum_probs=38.8
Q ss_pred CccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCccccCcccCeEeccCCcCCCcc-chhhcCCCCCCEEEcc
Q 008628 50 HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGTI-PQTYAKGCNLSYLRLS 128 (559)
Q Consensus 50 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~L~ 128 (559)
+.+.|++-++.+.++ +...+|+.|++|.|+-|.|+ .+.+.-.|++|++|+|..|.|.... -..+.++++|+.|.|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 334444444444422 12344555666666666554 3333333555556666555554321 1234455555555555
Q ss_pred cCcCC
Q 008628 129 GNHLE 133 (559)
Q Consensus 129 ~n~~~ 133 (559)
.|...
T Consensus 97 ENPCc 101 (388)
T KOG2123|consen 97 ENPCC 101 (388)
T ss_pred cCCcc
Confidence 55443
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.82 E-value=0.0058 Score=55.70 Aligned_cols=86 Identities=17% Similarity=0.274 Sum_probs=46.3
Q ss_pred CCccEEEccCCccccCCCccccCCCCCcEEEeecC--ccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCce
Q 008628 215 CVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNN--QINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLR 292 (559)
Q Consensus 215 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 292 (559)
..|+.+.+.+..++.. ..+-.+++|+.|.++.| ++.+.++.....+++|+++++++|++.- +........+++|.
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLKELENLK 119 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhhhhcchh
Confidence 3444444544444421 23344556666777666 4444444444455777777777776652 22222234456677
Q ss_pred EEEccCcccee
Q 008628 293 IIDLSYNRFTG 303 (559)
Q Consensus 293 ~L~l~~n~l~~ 303 (559)
.|++.+|.-+.
T Consensus 120 ~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 120 SLDLFNCSVTN 130 (260)
T ss_pred hhhcccCCccc
Confidence 77777766553
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.46 E-value=0.0018 Score=67.68 Aligned_cols=84 Identities=23% Similarity=0.143 Sum_probs=40.1
Q ss_pred hhhcCCCCccEEEccCCccccCC-CccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCC
Q 008628 209 QTFAKSCVLVSLNLNGNRLEGPL-PPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVP 287 (559)
Q Consensus 209 ~~~~~~~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 287 (559)
-....+++++.+.+..+...... ...+.+|+.|+ ..+..+ ......++.|+++.+..............
T Consensus 356 ~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~---------~~~~~~l~~L~l~~~~~~t~~~l~~~~~~ 425 (482)
T KOG1947|consen 356 LILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR---------LCRSDSLRVLNLSDCRLVTDKGLRCLADS 425 (482)
T ss_pred HHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH---------hccCCccceEecccCccccccchHHHhhh
Confidence 34456667777777766633222 13444555442 221111 11122277788877765322111111111
Q ss_pred CCCceEEEccCccce
Q 008628 288 FPKLRIIDLSYNRFT 302 (559)
Q Consensus 288 l~~L~~L~l~~n~l~ 302 (559)
+..+..+++.++...
T Consensus 426 ~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 426 CSNLKDLDLSGCRVI 440 (482)
T ss_pred hhccccCCccCcccc
Confidence 556677777776544
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.23 E-value=0.0033 Score=65.80 Aligned_cols=173 Identities=22% Similarity=0.151 Sum_probs=82.3
Q ss_pred CCCCCCEEEcccCcCCCC--CCccCCCCCCccEEEeeCC-cCCccc----chhccCCCCCCEEEccCCc-cccccCcccc
Q 008628 118 KGCNLSYLRLSGNHLEGP--LPPSLINCVKLHFLDVGNN-NLSGPI----PEYLGNSTSLSFLNVRNNS-LSGPIPECLG 189 (559)
Q Consensus 118 ~l~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~l~~n-~l~~~~----~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~ 189 (559)
.++.|+.+.+.++.-... .-.....++.|++|+++.+ ...... ......+.+|+.|+++.+. +++..-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356666666666532222 2233455667777777652 111111 1223345667777776666 3322222222
Q ss_pred --cCccCEEEccCCc-CCCC-cchhhcCCCCccEEEccCCccccC--CCccccCCCCCcEEEeecCccCcccchhhcCCC
Q 008628 190 --NSTLEILDMRMNK-FSGS-LPQTFAKSCVLVSLNLNGNRLEGP--LPPSLVNCRHLEVIDVGNNQINETFPHWLDVLP 263 (559)
Q Consensus 190 --~~~L~~L~l~~n~-~~~~-~~~~~~~~~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 263 (559)
...|+.|.+.++. +++. +......++.|++|+++++..... +.....++++++.|.+....- +.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~ 335 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CP 335 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Cc
Confidence 2347777766555 3322 233444567788888887754311 122233456666654433221 33
Q ss_pred CCcEEEcccccccc-cCCCCCCCCCCCCceEEEccCcc
Q 008628 264 ELQVLTLRSNRFRG-PIGDTKTRVPFPKLRIIDLSYNR 300 (559)
Q Consensus 264 ~L~~L~L~~n~l~~-~~~~~~~~~~l~~L~~L~l~~n~ 300 (559)
.++.+.+....... ..........+++++.+.+..+.
T Consensus 336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 33344433332211 01112222456677777776666
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.08 E-value=0.011 Score=29.54 Aligned_cols=17 Identities=53% Similarity=0.510 Sum_probs=7.6
Q ss_pred CccCEEECCCCCCCCCC
Q 008628 7 HTLYFLDLSRNFLTSID 23 (559)
Q Consensus 7 ~~L~~L~ls~n~~~~i~ 23 (559)
++|+.|++++|.++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 35666666666655543
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.06 E-value=0.0076 Score=32.51 Aligned_cols=9 Identities=56% Similarity=0.722 Sum_probs=3.3
Q ss_pred EEEccCCcC
Q 008628 384 SLNISHNNL 392 (559)
Q Consensus 384 ~L~Ls~n~l 392 (559)
+|+|++|++
T Consensus 4 ~Ldls~n~l 12 (22)
T PF00560_consen 4 YLDLSGNNL 12 (22)
T ss_dssp EEEETSSEE
T ss_pred EEECCCCcC
Confidence 333333333
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.72 E-value=0.017 Score=31.07 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=17.1
Q ss_pred cccEEEcCCcccccccchhhhc
Q 008628 357 TFATIDLSSNRFQGEISQVLGK 378 (559)
Q Consensus 357 ~L~~L~ls~n~l~~~~~~~~~~ 378 (559)
+|++||+++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4789999999999 67766664
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.83 E-value=0.053 Score=30.54 Aligned_cols=22 Identities=36% Similarity=0.366 Sum_probs=17.4
Q ss_pred CCccCEEECCCCCCCCCCcccc
Q 008628 6 VHTLYFLDLSRNFLTSIDHLPW 27 (559)
Q Consensus 6 l~~L~~L~ls~n~~~~i~~~~~ 27 (559)
+++|+.|+|++|.++.+|...+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4678888888888888877655
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.83 E-value=0.053 Score=30.54 Aligned_cols=22 Identities=36% Similarity=0.366 Sum_probs=17.4
Q ss_pred CCccCEEECCCCCCCCCCcccc
Q 008628 6 VHTLYFLDLSRNFLTSIDHLPW 27 (559)
Q Consensus 6 l~~L~~L~ls~n~~~~i~~~~~ 27 (559)
+++|+.|+|++|.++.+|...+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4678888888888888877655
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.93 E-value=0.00083 Score=68.78 Aligned_cols=171 Identities=22% Similarity=0.216 Sum_probs=90.1
Q ss_pred hhhcCCCCccEEEccCCccccCCCc----cccCC-CCCcEEEeecCccCcc----cchhhcCCCCCcEEEcccccccc--
Q 008628 209 QTFAKSCVLVSLNLNGNRLEGPLPP----SLVNC-RHLEVIDVGNNQINET----FPHWLDVLPELQVLTLRSNRFRG-- 277 (559)
Q Consensus 209 ~~~~~~~~L~~L~L~~n~~~~~~~~----~l~~l-~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~-- 277 (559)
..+...+.|+.|++++|.+.+..-. .+... ..++.|++..|.++.. +...+.....++.++++.|.+..
T Consensus 109 ~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g 188 (478)
T KOG4308|consen 109 QALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELG 188 (478)
T ss_pred HHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhh
Confidence 3444556666666666665522111 12222 3456666666766543 33444556677777777776631
Q ss_pred cCCCCCC----CCCCCCceEEEccCccceeecChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHH
Q 008628 278 PIGDTKT----RVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMER 353 (559)
Q Consensus 278 ~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 353 (559)
....... .....++++|++++|.++...-...... ..
T Consensus 189 ~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~---------------------------------------l~ 229 (478)
T KOG4308|consen 189 LLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEV---------------------------------------LA 229 (478)
T ss_pred hHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHH---------------------------------------Hh
Confidence 1000000 1134566777777766652111000000 00
Q ss_pred hhcc-ccEEEcCCcccccc----cchhhhcC-CCCCEEEccCCcCCCCCC----ccccCCCCCCEEeCCCCcCCc
Q 008628 354 ILTT-FATIDLSSNRFQGE----ISQVLGKL-NSLKSLNISHNNLTGGIP----SSLRNLTELESLDLSSNKLAG 418 (559)
Q Consensus 354 ~l~~-L~~L~ls~n~l~~~----~~~~~~~l-~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~ 418 (559)
..++ +..|++++|.+.+. ..+.+..+ ..++.++++.|.++.... ..+..+..++++.++.|++..
T Consensus 230 ~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 230 SGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred ccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 0222 45577777776644 22334444 566888888888875433 344556778888888887765
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.59 E-value=0.0019 Score=66.21 Aligned_cols=62 Identities=29% Similarity=0.397 Sum_probs=39.9
Q ss_pred cCEEEccCCcCCCC----cchhhcCC-CCccEEEccCCccccCCC----ccccCCCCCcEEEeecCccCcc
Q 008628 193 LEILDMRMNKFSGS----LPQTFAKS-CVLVSLNLNGNRLEGPLP----PSLVNCRHLEVIDVGNNQINET 254 (559)
Q Consensus 193 L~~L~l~~n~~~~~----~~~~~~~~-~~L~~L~L~~n~~~~~~~----~~l~~l~~L~~L~l~~n~l~~~ 254 (559)
+.++++..|.+.+. ....+... ..+++++++.|.++.... ..+..++.++++.++.|.+.+.
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 44466666665532 22334444 567888888888775433 3456677888888888887653
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.22 E-value=0.18 Score=28.34 Aligned_cols=14 Identities=36% Similarity=0.698 Sum_probs=6.7
Q ss_pred CCCCEEEccCCcCC
Q 008628 380 NSLKSLNISHNNLT 393 (559)
Q Consensus 380 ~~L~~L~Ls~n~l~ 393 (559)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34444555555444
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.22 E-value=0.18 Score=28.34 Aligned_cols=14 Identities=36% Similarity=0.698 Sum_probs=6.7
Q ss_pred CCCCEEEccCCcCC
Q 008628 380 NSLKSLNISHNNLT 393 (559)
Q Consensus 380 ~~L~~L~Ls~n~l~ 393 (559)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34444555555444
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.98 E-value=0.035 Score=48.69 Aligned_cols=81 Identities=25% Similarity=0.232 Sum_probs=59.1
Q ss_pred cccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCC-CCcccc-CCCCCCEEeCCCCc-CCccCcccccCCCCCCeE
Q 008628 357 TFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGG-IPSSLR-NLTELESLDLSSNK-LAGRIPTQLASLNYLSVL 433 (559)
Q Consensus 357 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~-~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L 433 (559)
.++.+|-++..+..+.-+-+..+++++.|.+.+|.-.+- --+-++ -.++|+.|+|++|+ |+..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 567899999999888888889999999999999853211 111111 35789999999885 554444567778888888
Q ss_pred eCcC
Q 008628 434 NLSN 437 (559)
Q Consensus 434 ~l~~ 437 (559)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 8765
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.45 E-value=0.052 Score=47.66 Aligned_cols=83 Identities=17% Similarity=0.069 Sum_probs=58.4
Q ss_pred ccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCC-Ccccc-CCCCCcEEEeecC-ccCcccchhhcCCCCCcEE
Q 008628 192 TLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPL-PPSLV-NCRHLEVIDVGNN-QINETFPHWLDVLPELQVL 268 (559)
Q Consensus 192 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~-~~~l~-~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 268 (559)
.++.+|.++..+..+--+.+..++.++.|.+.+|.--+.. -+.++ ..++|+.|++++| .|++....++..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3888888888887776777788888888888877532110 01111 3468899999988 7887777777788888888
Q ss_pred Eccccc
Q 008628 269 TLRSNR 274 (559)
Q Consensus 269 ~L~~n~ 274 (559)
.+.+-+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 776643
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.54 E-value=0.011 Score=52.81 Aligned_cols=84 Identities=18% Similarity=0.229 Sum_probs=67.6
Q ss_pred hccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEe
Q 008628 355 LTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN 434 (559)
Q Consensus 355 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 434 (559)
....+.||++.|++.. .-..|+.++.|..|+++.|.+. ..|..++.+..+..+++..|..+ ..|.++...+++++++
T Consensus 41 ~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 5677888998888763 3344777888888999988887 77788888888888888888887 5678888999999999
Q ss_pred CcCCccc
Q 008628 435 LSNNQLE 441 (559)
Q Consensus 435 l~~n~l~ 441 (559)
+.+|++.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9888765
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.25 E-value=0.29 Score=26.84 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=9.0
Q ss_pred ccccEEEcCCcccccccch
Q 008628 356 TTFATIDLSSNRFQGEISQ 374 (559)
Q Consensus 356 ~~L~~L~ls~n~l~~~~~~ 374 (559)
++|++|++++|.+++....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHH
Confidence 3455566666665544433
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=85.03 E-value=0.81 Score=25.73 Aligned_cols=17 Identities=41% Similarity=0.458 Sum_probs=12.3
Q ss_pred CCccCEEECCCCCCCCC
Q 008628 6 VHTLYFLDLSRNFLTSI 22 (559)
Q Consensus 6 l~~L~~L~ls~n~~~~i 22 (559)
+++|+.|++++|.|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 46778888888877654
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.28 E-value=0.034 Score=49.78 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=43.2
Q ss_pred CCCCCCCCEEEcccCcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCcc
Q 008628 69 FCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLH 147 (559)
Q Consensus 69 ~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 147 (559)
+......+.||++.|++. ..-.-+. ++.+..|+++.|.+. ..|..++....++.+++..|..+ ..|.+++..+.++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 344455566666666553 2222333 455555555555544 44555555555555555555444 4555555555555
Q ss_pred EEEeeCCc
Q 008628 148 FLDVGNNN 155 (559)
Q Consensus 148 ~L~l~~n~ 155 (559)
++++..+.
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 55555544
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=75.95 E-value=2.1 Score=24.03 Aligned_cols=18 Identities=39% Similarity=0.396 Sum_probs=12.1
Q ss_pred CccCEEECCCCCCCCCCc
Q 008628 7 HTLYFLDLSRNFLTSIDH 24 (559)
Q Consensus 7 ~~L~~L~ls~n~~~~i~~ 24 (559)
++|+.|.+++|.++++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356777777777776665
No 87
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=74.75 E-value=3.8 Score=33.27 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=8.0
Q ss_pred HHHhhhhhhHHhHH
Q 008628 503 MLGYASGVVIGLSI 516 (559)
Q Consensus 503 ~~~~~~~~~~~~~~ 516 (559)
+.++++|+++|++.
T Consensus 66 i~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 66 IIGIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHH
Confidence 45555666666644
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=73.16 E-value=8.1 Score=38.91 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=21.7
Q ss_pred CCcEEEcccccccccCCCC-CCCCCCCCceEEEccCccce
Q 008628 264 ELQVLTLRSNRFRGPIGDT-KTRVPFPKLRIIDLSYNRFT 302 (559)
Q Consensus 264 ~L~~L~L~~n~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~ 302 (559)
-+..+.++.|++....... .....-+.+..|++++|...
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 3566667776654322211 11233456788888888664
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=68.70 E-value=4.4 Score=23.13 Aligned_cols=13 Identities=54% Similarity=0.473 Sum_probs=6.8
Q ss_pred ccCEEECCCCCCC
Q 008628 8 TLYFLDLSRNFLT 20 (559)
Q Consensus 8 ~L~~L~ls~n~~~ 20 (559)
+|++|||++|.|.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555543
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=67.66 E-value=9.2 Score=38.57 Aligned_cols=101 Identities=19% Similarity=0.092 Sum_probs=48.9
Q ss_pred CccCEEECCCCCCC-CCCcccccCCcEEEccCCcccccCCCCC------CCccEEEeeeccCCcccCccCCC---CCCCC
Q 008628 7 HTLYFLDLSRNFLT-SIDHLPWKNLEYLTLDSNLLQGSLPDLP------PHMVELLISNNSLTGEIPSSFCN---LSSIQ 76 (559)
Q Consensus 7 ~~L~~L~ls~n~~~-~i~~~~~~~L~~L~Ls~n~~~~~~~~~~------~~L~~L~L~~n~i~~~~~~~~~~---l~~L~ 76 (559)
+.++.+|++.|.+. +.|..+..----+.++.|..+...-+.+ ..+.+++|+.|...+.+|..+.. -.-++
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~ 244 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLF 244 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhhhh
Confidence 34677889988776 4444333111114445554433111111 15667777777666555543322 12455
Q ss_pred EEEcccCcCccc--cCcc-cc-CcccCeEeccCCc
Q 008628 77 YLNLSNNSLSGQ--IPQC-LG-NSTLETLDLRMNN 107 (559)
Q Consensus 77 ~L~L~~n~~~~~--~~~~-~~-~~~L~~L~L~~n~ 107 (559)
.++.+...+... .... .+ -++++..+++.|.
T Consensus 245 ~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng 279 (553)
T KOG4242|consen 245 KLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNG 279 (553)
T ss_pred cccccccccchhhcccccccccccccchhhhccCC
Confidence 666665544311 1111 12 3566666666654
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=67.56 E-value=2.7 Score=51.49 Aligned_cols=33 Identities=30% Similarity=0.366 Sum_probs=19.0
Q ss_pred EccCCcCCCCCCccccCCCCCCEEeCCCCcCCc
Q 008628 386 NISHNNLTGGIPSSLRNLTELESLDLSSNKLAG 418 (559)
Q Consensus 386 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 418 (559)
||++|+|+.+.+..|..+++|+.|+|++|++..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 355666665555555556666666666665543
No 92
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=65.19 E-value=8.2 Score=23.78 Aligned_cols=11 Identities=27% Similarity=0.573 Sum_probs=4.7
Q ss_pred HhhhhhhHHhH
Q 008628 505 GYASGVVIGLS 515 (559)
Q Consensus 505 ~~~~~~~~~~~ 515 (559)
++.+++++|++
T Consensus 7 aIIv~V~vg~~ 17 (38)
T PF02439_consen 7 AIIVAVVVGMA 17 (38)
T ss_pred hHHHHHHHHHH
Confidence 33444444443
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.53 E-value=4.7 Score=41.36 Aligned_cols=60 Identities=25% Similarity=0.247 Sum_probs=30.1
Q ss_pred cCCcEEEccCCcccc-----cCCCCCCCccEEEeeeccCCcccCccCCC--CCCCCEEEcccCcCcc
Q 008628 28 KNLEYLTLDSNLLQG-----SLPDLPPHMVELLISNNSLTGEIPSSFCN--LSSIQYLNLSNNSLSG 87 (559)
Q Consensus 28 ~~L~~L~Ls~n~~~~-----~~~~~~~~L~~L~L~~n~i~~~~~~~~~~--l~~L~~L~L~~n~~~~ 87 (559)
+.+..+.|++|++.. .+....++|+.|+|++|...-.....+.+ ...|+.|-+.+|.+..
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 555556666665442 22233446666666666221111112222 3457777777777653
No 94
>PRK09459 pspG phage shock protein G; Reviewed
Probab=53.87 E-value=11 Score=27.28 Aligned_cols=7 Identities=43% Similarity=1.265 Sum_probs=3.1
Q ss_pred hhhHHHH
Q 008628 528 WFVRMIE 534 (559)
Q Consensus 528 w~~~~~~ 534 (559)
|++|..+
T Consensus 59 W~~r~~~ 65 (76)
T PRK09459 59 WVIRAIK 65 (76)
T ss_pred HHHHHhh
Confidence 4544433
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=48.62 E-value=9 Score=39.43 Aligned_cols=62 Identities=31% Similarity=0.395 Sum_probs=35.9
Q ss_pred hccccEEEcCCcccccc--cchhhhcCCCCCEEEccCC--cCCCCCCcccc--CCCCCCEEeCCCCcCCc
Q 008628 355 LTTFATIDLSSNRFQGE--ISQVLGKLNSLKSLNISHN--NLTGGIPSSLR--NLTELESLDLSSNKLAG 418 (559)
Q Consensus 355 l~~L~~L~ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~ 418 (559)
.+.+..+.|++|++... +...-...+.|+.|+|++| .+... ..+. ....|++|-+.+|++..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCcccc
Confidence 55667777888877543 1122234577888888888 33211 1122 12347777788887764
No 96
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=47.59 E-value=2.3 Score=35.62 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=5.0
Q ss_pred HHHhhhhhhHHh
Q 008628 503 MLGYASGVVIGL 514 (559)
Q Consensus 503 ~~~~~~~~~~~~ 514 (559)
++|+++|+.+++
T Consensus 51 VIGvVVGVGg~i 62 (154)
T PF04478_consen 51 VIGVVVGVGGPI 62 (154)
T ss_pred EEEEEecccHHH
Confidence 344444443333
No 97
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=44.02 E-value=19 Score=26.64 Aligned_cols=30 Identities=10% Similarity=0.121 Sum_probs=16.6
Q ss_pred hhhhHHHhhhhhhHHhHHHHHHHhcCccch
Q 008628 499 WKLAMLGYASGVVIGLSIGYMAFVTGRPQW 528 (559)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 528 (559)
|.+++.+.+++++++.+.+.+++.+.++.|
T Consensus 16 ~yyiiA~gga~llL~~v~l~vvL~C~r~~~ 45 (87)
T PF11980_consen 16 WYYIIAMGGALLLLVAVCLGVVLYCHRFHW 45 (87)
T ss_pred eeHHHhhccHHHHHHHHHHHHHHhhhhhcc
Confidence 455555555555555555455555555555
No 98
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=43.57 E-value=6.7 Score=27.42 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=0.0
Q ss_pred HHHhhhhhhHHhHHHH
Q 008628 503 MLGYASGVVIGLSIGY 518 (559)
Q Consensus 503 ~~~~~~~~~~~~~~~~ 518 (559)
+.|+++|.++|+++++
T Consensus 11 laavIaG~Vvgll~ai 26 (64)
T PF01034_consen 11 LAAVIAGGVVGLLFAI 26 (64)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445444444433
No 99
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=43.28 E-value=21 Score=26.46 Aligned_cols=20 Identities=5% Similarity=0.396 Sum_probs=8.0
Q ss_pred HHHhhhhhhHHhHHHHHHHh
Q 008628 503 MLGYASGVVIGLSIGYMAFV 522 (559)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~ 522 (559)
+++++++++++++|+.+++.
T Consensus 9 iialiv~~iiaIvvW~iv~i 28 (81)
T PF00558_consen 9 IIALIVALIIAIVVWTIVYI 28 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 100
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=40.79 E-value=20 Score=19.84 Aligned_cols=12 Identities=42% Similarity=0.274 Sum_probs=6.9
Q ss_pred CCccCEEECCCC
Q 008628 6 VHTLYFLDLSRN 17 (559)
Q Consensus 6 l~~L~~L~ls~n 17 (559)
+++|++|+|++|
T Consensus 1 c~~L~~L~l~~C 12 (26)
T smart00367 1 CPNLRELDLSGC 12 (26)
T ss_pred CCCCCEeCCCCC
Confidence 355666666665
No 101
>PF15179 Myc_target_1: Myc target protein 1
Probab=39.88 E-value=38 Score=29.35 Aligned_cols=26 Identities=35% Similarity=0.811 Sum_probs=13.8
Q ss_pred chhhhhHHHhhhhhhHHhHHHHHHHh
Q 008628 497 FDWKLAMLGYASGVVIGLSIGYMAFV 522 (559)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (559)
++|.-++++..+.+++|++++.++|.
T Consensus 16 f~~~~lIlaF~vSm~iGLviG~li~~ 41 (197)
T PF15179_consen 16 FDWEDLILAFCVSMAIGLVIGALIWA 41 (197)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555556666655555433
No 102
>PTZ00370 STEVOR; Provisional
Probab=33.59 E-value=23 Score=33.22 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=6.8
Q ss_pred chhhHHHHHhcc
Q 008628 527 QWFVRMIERKQS 538 (559)
Q Consensus 527 ~w~~~~~~~~~~ 538 (559)
.|++|++++-+|
T Consensus 276 iwlyrrRK~swk 287 (296)
T PTZ00370 276 IWLYRRRKNSWK 287 (296)
T ss_pred HHHHHhhcchhH
Confidence 477665555443
No 103
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=32.76 E-value=24 Score=32.99 Aligned_cols=13 Identities=15% Similarity=0.312 Sum_probs=7.1
Q ss_pred cchhhHHHHHhcc
Q 008628 526 PQWFVRMIERKQS 538 (559)
Q Consensus 526 ~~w~~~~~~~~~~ 538 (559)
+.|++|++++-+|
T Consensus 279 YiWlyrrRK~swk 291 (295)
T TIGR01478 279 YIWLYRRRKKSWK 291 (295)
T ss_pred HHHHHHhhccccc
Confidence 3477765554443
No 104
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=31.80 E-value=41 Score=23.94 Aligned_cols=12 Identities=33% Similarity=0.756 Sum_probs=5.1
Q ss_pred HHhhhhhhHHhH
Q 008628 504 LGYASGVVIGLS 515 (559)
Q Consensus 504 ~~~~~~~~~~~~ 515 (559)
+|+..+++++++
T Consensus 36 IGvi~gi~~~~l 47 (68)
T PF04971_consen 36 IGVIGGIFFGLL 47 (68)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 105
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.84 E-value=50 Score=23.42 Aligned_cols=17 Identities=18% Similarity=0.384 Sum_probs=8.2
Q ss_pred HHhhhhhhHHhHHHHHH
Q 008628 504 LGYASGVVIGLSIGYMA 520 (559)
Q Consensus 504 ~~~~~~~~~~~~~~~~~ 520 (559)
+.+.+++++|++++.++
T Consensus 22 l~il~~f~~G~llg~l~ 38 (68)
T PF06305_consen 22 LLILIAFLLGALLGWLL 38 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455555555444
No 106
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.57 E-value=44 Score=27.10 Aligned_cols=15 Identities=33% Similarity=0.596 Sum_probs=7.3
Q ss_pred hhhhHHhHHHHHHHh
Q 008628 508 SGVVIGLSIGYMAFV 522 (559)
Q Consensus 508 ~~~~~~~~~~~~~~~ 522 (559)
+|+|||++|++++..
T Consensus 13 igLvvGi~IG~li~R 27 (138)
T COG3105 13 IGLVVGIIIGALIAR 27 (138)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555554433
No 107
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=30.48 E-value=34 Score=30.65 Aligned_cols=18 Identities=11% Similarity=0.401 Sum_probs=8.1
Q ss_pred hHHHhhhhhhHHhHHHHH
Q 008628 502 AMLGYASGVVIGLSIGYM 519 (559)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~ 519 (559)
+++|+++|++..++|+++
T Consensus 39 I~iaiVAG~~tVILVI~i 56 (221)
T PF08374_consen 39 IMIAIVAGIMTVILVIFI 56 (221)
T ss_pred eeeeeecchhhhHHHHHH
Confidence 445555554444443333
No 108
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=30.24 E-value=62 Score=23.76 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=6.5
Q ss_pred hhhhhhHHhHHHHHHHh
Q 008628 506 YASGVVIGLSIGYMAFV 522 (559)
Q Consensus 506 ~~~~~~~~~~~~~~~~~ 522 (559)
+++|+++.++++++++.
T Consensus 6 ~~~g~~~ll~~v~~~~~ 22 (75)
T PF14575_consen 6 IIVGVLLLLVLVIIVIV 22 (75)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhheeEEE
Confidence 33444333333333333
No 109
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=30.05 E-value=31 Score=43.02 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=29.3
Q ss_pred EcCCcccccccchhhhcCCCCCEEEccCCcCC
Q 008628 362 DLSSNRFQGEISQVLGKLNSLKSLNISHNNLT 393 (559)
Q Consensus 362 ~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 393 (559)
||++|+|+.+.+..|..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999888888999999999999999876
No 110
>PF15179 Myc_target_1: Myc target protein 1
Probab=28.34 E-value=43 Score=29.01 Aligned_cols=28 Identities=25% Similarity=0.171 Sum_probs=18.2
Q ss_pred hhhHHHhhhhhhHHhHHHHHHHhcCccc
Q 008628 500 KLAMLGYASGVVIGLSIGYMAFVTGRPQ 527 (559)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (559)
..+.+.+++|+++|.+|.+++.+..+++
T Consensus 23 laF~vSm~iGLviG~li~~LltwlSRRR 50 (197)
T PF15179_consen 23 LAFCVSMAIGLVIGALIWALLTWLSRRR 50 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556777778888888776665543333
No 111
>PRK11677 hypothetical protein; Provisional
Probab=26.71 E-value=54 Score=27.24 Aligned_cols=14 Identities=43% Similarity=0.826 Sum_probs=6.9
Q ss_pred hhhhHHhHHHHHHH
Q 008628 508 SGVVIGLSIGYMAF 521 (559)
Q Consensus 508 ~~~~~~~~~~~~~~ 521 (559)
++++||++|++++.
T Consensus 8 i~livG~iiG~~~~ 21 (134)
T PRK11677 8 IGLVVGIIIGAVAM 21 (134)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555554443
No 112
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=26.68 E-value=63 Score=24.39 Aligned_cols=19 Identities=16% Similarity=0.646 Sum_probs=9.3
Q ss_pred chhhH---HHHHhccceEEEEE
Q 008628 527 QWFVR---MIERKQSKKLRRVI 545 (559)
Q Consensus 527 ~w~~~---~~~~~~~~~~~~~~ 545 (559)
.|+.| ..+|.+|++..+..
T Consensus 56 ~~fLkDlIlv~KAkrqrsTeEi 77 (91)
T PF01708_consen 56 TWFLKDLILVLKAKRQRSTEEI 77 (91)
T ss_pred HHHHHHHhheeeeccCCceeee
Confidence 37766 33444444444433
No 113
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=25.84 E-value=17 Score=30.57 Aligned_cols=21 Identities=14% Similarity=0.395 Sum_probs=11.2
Q ss_pred hHHHhhhhhhHHhHHHHHHHh
Q 008628 502 AMLGYASGVVIGLSIGYMAFV 522 (559)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~ 522 (559)
+.+|+++++++++++++++|+
T Consensus 54 vVVGVGg~ill~il~lvf~~c 74 (154)
T PF04478_consen 54 VVVGVGGPILLGILALVFIFC 74 (154)
T ss_pred EEecccHHHHHHHHHhheeEE
Confidence 345666666666554444443
No 114
>PF15050 SCIMP: SCIMP protein
Probab=25.70 E-value=1.1e+02 Score=24.60 Aligned_cols=14 Identities=7% Similarity=0.489 Sum_probs=7.2
Q ss_pred hhhHHhHHHHHHHh
Q 008628 509 GVVIGLSIGYMAFV 522 (559)
Q Consensus 509 ~~~~~~~~~~~~~~ 522 (559)
.+++.+++++++|+
T Consensus 16 II~vS~~lglIlyC 29 (133)
T PF15050_consen 16 IILVSVVLGLILYC 29 (133)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555554
No 115
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=25.57 E-value=17 Score=28.60 Aligned_cols=6 Identities=17% Similarity=0.994 Sum_probs=0.0
Q ss_pred chhhHH
Q 008628 527 QWFVRM 532 (559)
Q Consensus 527 ~w~~~~ 532 (559)
.||+|+
T Consensus 44 CWYckR 49 (118)
T PF14991_consen 44 CWYCKR 49 (118)
T ss_dssp ------
T ss_pred heeeee
Confidence 477664
No 116
>COG3216 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.67 E-value=44 Score=28.85 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=7.4
Q ss_pred hhhhHHHhhhhhhHHh
Q 008628 499 WKLAMLGYASGVVIGL 514 (559)
Q Consensus 499 ~~~~~~~~~~~~~~~~ 514 (559)
|..++.+..+|.++.-
T Consensus 135 w~P~l~pm~vgav~~~ 150 (184)
T COG3216 135 WGPVLKPMLVGAVPAG 150 (184)
T ss_pred cchHHHHHHHhhHHHH
Confidence 3344555555544333
No 117
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=22.38 E-value=1.5e+02 Score=18.91 Aligned_cols=8 Identities=25% Similarity=0.405 Sum_probs=4.2
Q ss_pred cCCcEEEc
Q 008628 28 KNLEYLTL 35 (559)
Q Consensus 28 ~~L~~L~L 35 (559)
+++++|.+
T Consensus 12 ~~l~~L~~ 19 (44)
T PF05725_consen 12 SSLKSLIF 19 (44)
T ss_pred CCCeEEEE
Confidence 45555555
No 118
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=22.09 E-value=1.3e+02 Score=21.35 Aligned_cols=14 Identities=21% Similarity=0.596 Sum_probs=7.1
Q ss_pred hhhhHHhHHHHHHH
Q 008628 508 SGVVIGLSIGYMAF 521 (559)
Q Consensus 508 ~~~~~~~~~~~~~~ 521 (559)
+++++|+++++++.
T Consensus 5 lali~G~~~Gff~a 18 (64)
T PF03672_consen 5 LALIVGAVIGFFIA 18 (64)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555543
No 119
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.97 E-value=79 Score=25.76 Aligned_cols=16 Identities=19% Similarity=0.166 Sum_probs=8.6
Q ss_pred hhhHHHhhhhhhHHhH
Q 008628 500 KLAMLGYASGVVIGLS 515 (559)
Q Consensus 500 ~~~~~~~~~~~~~~~~ 515 (559)
..+++|+.+|++..++
T Consensus 67 ~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHH
Confidence 4455666566544444
No 120
>PF15106 TMEM156: TMEM156 protein family
Probab=21.20 E-value=88 Score=27.89 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=10.8
Q ss_pred HHHHHhccceEEEEE
Q 008628 531 RMIERKQSKKLRRVI 545 (559)
Q Consensus 531 ~~~~~~~~~~~~~~~ 545 (559)
|++|+|+..||.+-.
T Consensus 202 rrvqkwq~hky~~ts 216 (226)
T PF15106_consen 202 RRVQKWQSHKYKPTS 216 (226)
T ss_pred hhHhHHhhcCCCcce
Confidence 456888888887754
No 121
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=20.95 E-value=1.6e+02 Score=18.07 Aligned_cols=21 Identities=24% Similarity=0.166 Sum_probs=10.5
Q ss_pred hhhhHHHhhhhhhHHhHHHHH
Q 008628 499 WKLAMLGYASGVVIGLSIGYM 519 (559)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~ 519 (559)
..++.+++...+++.++++..
T Consensus 14 r~Wi~F~l~mi~vFi~li~yt 34 (38)
T PF09125_consen 14 RGWIAFALAMILVFIALIGYT 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554443
No 122
>PF15050 SCIMP: SCIMP protein
Probab=20.59 E-value=99 Score=24.76 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=13.1
Q ss_pred hhhhHHHhhhhhhHHhHHHHHHHh
Q 008628 499 WKLAMLGYASGVVIGLSIGYMAFV 522 (559)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~ 522 (559)
|...+++++++.++..+|.++++.
T Consensus 9 WiiLAVaII~vS~~lglIlyCvcR 32 (133)
T PF15050_consen 9 WIILAVAIILVSVVLGLILYCVCR 32 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555544555566666
No 123
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=20.29 E-value=51 Score=33.34 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=10.3
Q ss_pred HHhhhhhhHHhHHHHHHHh
Q 008628 504 LGYASGVVIGLSIGYMAFV 522 (559)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~ 522 (559)
+++++++|||.+|+|+.||
T Consensus 372 IsvavvvvVgglvGfLcWw 390 (397)
T PF03302_consen 372 ISVAVVVVVGGLVGFLCWW 390 (397)
T ss_pred eeehhHHHHHHHHHHHhhh
Confidence 4444455566666665543
No 124
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=20.06 E-value=1.5e+02 Score=23.10 Aligned_cols=18 Identities=11% Similarity=0.170 Sum_probs=7.2
Q ss_pred HHHhhhhhhHHhHHHHHH
Q 008628 503 MLGYASGVVIGLSIGYMA 520 (559)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~ 520 (559)
++|+++++++.-++++++
T Consensus 20 LVGVv~~al~~SlLIala 37 (102)
T PF15176_consen 20 LVGVVVTALVTSLLIALA 37 (102)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445444443333333333
Done!