Query 008628
Match_columns 559
No_of_seqs 394 out of 4496
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 07:59:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008628.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008628hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.1E-57 7.1E-62 498.3 35.2 471 3-479 219-754 (768)
2 3j0a_A TOLL-like receptor 5; m 100.0 3.5E-51 1.2E-55 453.4 28.7 450 7-469 24-565 (844)
3 3rgz_A Protein brassinosteroid 100.0 1.6E-50 5.6E-55 443.6 32.2 455 4-464 197-717 (768)
4 3t6q_A CD180 antigen; protein- 100.0 1.1E-47 3.8E-52 411.8 35.2 443 4-468 54-564 (606)
5 3vq2_A TLR4, TOLL-like recepto 100.0 2.8E-46 9.7E-51 400.9 33.7 437 9-469 13-563 (606)
6 3t6q_A CD180 antigen; protein- 100.0 1.7E-45 5.7E-50 394.9 37.8 435 9-445 14-517 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 2E-45 6.8E-50 399.6 37.8 461 7-469 25-627 (680)
8 3j0a_A TOLL-like receptor 5; m 100.0 7.4E-46 2.5E-50 410.8 34.3 444 10-462 7-537 (844)
9 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-44 4.9E-49 392.9 35.8 441 3-446 45-627 (680)
10 2z63_A TOLL-like receptor 4, v 100.0 2.3E-44 7.9E-49 383.3 34.0 452 8-469 8-536 (570)
11 3vq2_A TLR4, TOLL-like recepto 100.0 5E-44 1.7E-48 383.4 33.7 413 7-447 32-564 (606)
12 4eco_A Uncharacterized protein 100.0 9.4E-45 3.2E-49 389.0 27.0 412 7-465 81-601 (636)
13 2z63_A TOLL-like receptor 4, v 100.0 3.2E-44 1.1E-48 382.3 29.6 415 7-448 28-538 (570)
14 4eco_A Uncharacterized protein 100.0 3.5E-43 1.2E-47 376.9 26.5 334 105-463 192-578 (636)
15 4ecn_A Leucine-rich repeat pro 100.0 9.2E-43 3.1E-47 379.6 27.8 406 7-442 323-841 (876)
16 2z7x_B TOLL-like receptor 1, v 100.0 4E-43 1.4E-47 369.3 23.3 428 10-468 3-485 (520)
17 2z81_A CD282 antigen, TOLL-lik 100.0 1.7E-42 5.9E-47 367.1 28.2 434 6-468 4-514 (549)
18 2z81_A CD282 antigen, TOLL-lik 100.0 6.1E-42 2.1E-46 362.9 27.5 410 7-446 26-515 (549)
19 3v47_A TOLL-like receptor 5B a 100.0 2.2E-41 7.5E-46 350.0 28.8 378 10-447 13-414 (455)
20 4ecn_A Leucine-rich repeat pro 100.0 1.7E-41 6E-46 369.6 29.1 415 28-464 323-840 (876)
21 4g8a_A TOLL-like receptor 4; l 100.0 2.1E-40 7E-45 357.6 34.3 438 10-468 34-584 (635)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.3E-41 1.8E-45 356.1 28.6 409 6-446 30-515 (562)
23 3v47_A TOLL-like receptor 5B a 100.0 3.5E-40 1.2E-44 341.1 30.8 356 7-421 30-412 (455)
24 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-41 4.1E-46 358.0 19.0 405 7-446 21-486 (520)
25 4g8a_A TOLL-like receptor 4; l 100.0 2.9E-38 9.8E-43 340.8 29.8 416 8-446 53-585 (635)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.6E-38 8.8E-43 335.4 28.2 407 28-468 31-514 (562)
27 2id5_A Lingo-1, leucine rich r 100.0 7.9E-38 2.7E-42 325.2 25.8 347 52-469 14-361 (477)
28 1o6v_A Internalin A; bacterial 100.0 5.5E-36 1.9E-40 310.0 34.0 345 25-443 43-390 (466)
29 1jl5_A Outer protein YOPM; leu 100.0 1.2E-36 4.2E-41 312.1 28.0 373 5-446 9-416 (454)
30 1o6v_A Internalin A; bacterial 100.0 8.3E-36 2.8E-40 308.6 32.0 343 6-419 45-390 (466)
31 2id5_A Lingo-1, leucine rich r 100.0 2.5E-36 8.7E-41 313.8 26.7 344 10-446 14-361 (477)
32 3bz5_A Internalin-J, INLJ; leu 100.0 8.4E-36 2.9E-40 306.1 26.3 353 4-447 39-393 (457)
33 1jl5_A Outer protein YOPM; leu 100.0 2.6E-34 9E-39 294.7 31.1 371 3-445 30-433 (454)
34 3o6n_A APL1; leucine-rich repe 100.0 3.2E-34 1.1E-38 290.0 26.3 332 50-468 46-378 (390)
35 3oja_B Anopheles plasmodium-re 100.0 5.6E-34 1.9E-38 303.8 26.4 332 50-468 52-384 (597)
36 4fmz_A Internalin; leucine ric 100.0 4.7E-33 1.6E-37 276.9 29.5 304 72-441 43-346 (347)
37 4fmz_A Internalin; leucine ric 100.0 7.2E-32 2.5E-36 268.3 29.8 301 50-417 45-346 (347)
38 3o6n_A APL1; leucine-rich repe 100.0 2.3E-32 7.8E-37 276.3 25.9 311 95-467 44-355 (390)
39 1ogq_A PGIP-2, polygalacturona 100.0 3.3E-33 1.1E-37 273.1 18.9 259 144-473 50-312 (313)
40 3bz5_A Internalin-J, INLJ; leu 100.0 4.9E-32 1.7E-36 278.1 26.4 318 28-443 42-370 (457)
41 3oja_B Anopheles plasmodium-re 100.0 7.4E-32 2.5E-36 287.4 26.0 311 95-467 50-361 (597)
42 1xku_A Decorin; proteoglycan, 100.0 4.9E-31 1.7E-35 260.2 28.0 246 8-259 32-283 (330)
43 1ogq_A PGIP-2, polygalacturona 100.0 3.1E-32 1.1E-36 266.2 16.1 250 49-302 50-304 (313)
44 2ft3_A Biglycan; proteoglycan, 100.0 7.2E-31 2.5E-35 259.2 25.1 242 28-302 33-277 (332)
45 1xku_A Decorin; proteoglycan, 100.0 2.1E-30 7.1E-35 255.7 28.4 289 97-439 32-330 (330)
46 2ft3_A Biglycan; proteoglycan, 100.0 7.8E-31 2.7E-35 259.0 24.5 286 8-300 34-331 (332)
47 1z7x_W Ribonuclease inhibitor; 100.0 3.1E-34 1.1E-38 296.9 -1.2 354 50-442 29-441 (461)
48 1z7x_W Ribonuclease inhibitor; 100.0 7.3E-34 2.5E-38 294.2 -1.4 355 49-443 3-413 (461)
49 2z80_A TOLL-like receptor 2, v 100.0 6.3E-29 2.2E-33 247.5 16.9 277 28-306 31-318 (353)
50 2z80_A TOLL-like receptor 2, v 100.0 5.3E-28 1.8E-32 240.8 21.5 273 6-278 30-316 (353)
51 2z66_A Variable lymphocyte rec 100.0 3.9E-28 1.3E-32 236.8 20.0 232 50-306 29-265 (306)
52 3zyi_A Leucine-rich repeat-con 100.0 4.8E-27 1.6E-31 241.9 28.7 92 355-446 217-308 (452)
53 2z66_A Variable lymphocyte rec 100.0 1.5E-27 5.2E-32 232.6 21.9 91 355-445 174-265 (306)
54 3zyj_A Leucine-rich repeat-con 100.0 3.8E-27 1.3E-31 241.8 25.3 92 355-446 206-297 (440)
55 3zyi_A Leucine-rich repeat-con 100.0 3E-27 1E-31 243.4 24.2 245 29-274 55-301 (452)
56 3zyj_A Leucine-rich repeat-con 100.0 3.6E-27 1.2E-31 241.9 23.7 246 28-274 43-290 (440)
57 1ozn_A Reticulon 4 receptor; N 100.0 1.5E-27 5.1E-32 230.1 18.4 219 10-228 14-238 (285)
58 1ozn_A Reticulon 4 receptor; N 100.0 6E-28 2.1E-32 232.9 15.5 224 30-276 13-238 (285)
59 4fcg_A Uncharacterized protein 99.9 6.7E-27 2.3E-31 229.7 20.7 223 49-275 81-313 (328)
60 3ogk_B Coronatine-insensitive 99.9 1.4E-29 4.9E-34 270.5 1.0 90 354-443 434-528 (592)
61 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-28 6.4E-33 240.0 7.8 264 100-445 14-280 (317)
62 3ogk_B Coronatine-insensitive 99.9 6.3E-29 2.1E-33 265.5 1.2 417 4-439 70-549 (592)
63 4fcg_A Uncharacterized protein 99.9 3.7E-26 1.3E-30 224.4 20.9 220 28-252 81-314 (328)
64 3g06_A SSPH2 (leucine-rich rep 99.9 4E-25 1.4E-29 233.4 27.1 264 7-308 40-303 (622)
65 1wwl_A Monocyte differentiatio 99.9 1.3E-27 4.3E-32 233.6 7.3 242 28-277 43-310 (312)
66 3oja_A Leucine-rich immune mol 99.9 9.5E-27 3.2E-31 241.0 13.6 234 121-436 35-270 (487)
67 3g06_A SSPH2 (leucine-rich rep 99.9 6.4E-25 2.2E-29 231.8 27.0 261 74-445 41-301 (622)
68 1wwl_A Monocyte differentiatio 99.9 3.8E-27 1.3E-31 230.1 6.9 241 50-302 44-309 (312)
69 3o53_A Protein LRIM1, AGAP0063 99.9 5.8E-27 2E-31 229.4 4.6 260 8-279 11-279 (317)
70 2z62_A TOLL-like receptor 4, v 99.9 1.5E-24 5E-29 208.1 20.0 219 11-253 11-238 (276)
71 2p1m_B Transport inhibitor res 99.9 2.4E-27 8.3E-32 253.3 -5.1 377 50-441 106-519 (594)
72 3oja_A Leucine-rich immune mol 99.9 5.5E-25 1.9E-29 227.8 12.6 218 145-443 35-252 (487)
73 2o6q_A Variable lymphocyte rec 99.9 1.4E-23 4.9E-28 200.3 21.3 206 193-446 18-223 (270)
74 2z62_A TOLL-like receptor 4, v 99.9 1.3E-23 4.3E-28 201.5 20.4 205 73-278 28-239 (276)
75 2p1m_B Transport inhibitor res 99.9 7.9E-27 2.7E-31 249.3 -6.7 415 4-441 63-544 (594)
76 2o6q_A Variable lymphocyte rec 99.9 1.2E-22 4.2E-27 193.8 22.4 202 28-252 16-218 (270)
77 1p9a_G Platelet glycoprotein I 99.9 1.3E-22 4.4E-27 195.4 19.9 176 3-181 6-185 (290)
78 4glp_A Monocyte differentiatio 99.9 3.6E-23 1.2E-27 201.8 13.0 206 192-442 92-308 (310)
79 3rfs_A Internalin B, repeat mo 99.9 1.2E-22 4E-27 194.1 14.7 221 51-308 21-241 (272)
80 3rfs_A Internalin B, repeat mo 99.9 1.8E-22 6E-27 192.9 15.8 223 9-240 21-247 (272)
81 1p9a_G Platelet glycoprotein I 99.9 7.7E-22 2.6E-26 189.9 19.8 199 28-252 10-208 (290)
82 3m19_A Variable lymphocyte rec 99.9 9.8E-22 3.3E-26 185.4 17.8 177 7-183 14-194 (251)
83 2ast_B S-phase kinase-associat 99.9 2.9E-23 9.8E-28 205.2 6.4 250 146-447 49-312 (336)
84 2xwt_C Thyrotropin receptor; s 99.9 8.7E-22 3E-26 184.4 16.2 184 43-228 25-218 (239)
85 3goz_A Leucine-rich repeat-con 99.9 1.3E-23 4.6E-28 209.5 3.9 84 100-183 2-95 (362)
86 2xwt_C Thyrotropin receptor; s 99.9 2.3E-21 8E-26 181.5 16.2 196 192-438 32-236 (239)
87 2ca6_A RAN GTPase-activating p 99.9 2.2E-23 7.4E-28 210.1 2.0 256 135-445 23-320 (386)
88 3goz_A Leucine-rich repeat-con 99.9 8.1E-23 2.8E-27 203.8 6.1 257 54-310 3-305 (362)
89 2ca6_A RAN GTPase-activating p 99.9 2.2E-23 7.5E-28 210.0 1.0 256 95-413 31-339 (386)
90 2ast_B S-phase kinase-associat 99.9 8.3E-23 2.8E-27 201.9 4.4 250 50-308 48-312 (336)
91 4glp_A Monocyte differentiatio 99.9 1.5E-21 5.1E-26 190.3 12.4 201 95-303 90-308 (310)
92 3m19_A Variable lymphocyte rec 99.9 2.1E-20 7.1E-25 176.3 19.0 176 28-203 14-191 (251)
93 1h6u_A Internalin H; cell adhe 99.8 2.6E-20 8.8E-25 181.1 18.2 189 193-442 43-231 (308)
94 4ay9_X Follicle-stimulating ho 99.8 4.8E-20 1.6E-24 182.8 19.9 198 31-228 12-215 (350)
95 1h6u_A Internalin H; cell adhe 99.8 5.8E-20 2E-24 178.6 19.0 191 72-276 40-230 (308)
96 4ay9_X Follicle-stimulating ho 99.8 1.9E-19 6.4E-24 178.5 20.5 240 123-438 12-256 (350)
97 2o6s_A Variable lymphocyte rec 99.8 5.3E-20 1.8E-24 168.2 15.0 178 10-214 10-188 (208)
98 2o6s_A Variable lymphocyte rec 99.8 1.7E-19 5.7E-24 164.9 14.4 156 6-168 27-189 (208)
99 3cvr_A Invasion plasmid antige 99.8 8.5E-19 2.9E-23 182.8 18.7 187 29-238 60-253 (571)
100 3cvr_A Invasion plasmid antige 99.8 1.5E-18 5.1E-23 181.0 17.8 187 50-262 60-253 (571)
101 2xot_A Amphoterin-induced prot 99.8 9E-19 3.1E-23 174.3 14.1 172 10-181 21-202 (361)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 2.6E-18 8.9E-23 158.1 15.8 153 10-182 14-167 (220)
103 2v9t_B SLIT homolog 2 protein 99.8 2.9E-18 1E-22 157.8 16.1 132 50-181 33-165 (220)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 2.5E-18 8.7E-23 158.2 15.7 153 51-206 13-168 (220)
105 2v9t_B SLIT homolog 2 protein 99.8 3.3E-18 1.1E-22 157.5 16.1 149 10-158 14-166 (220)
106 1h6t_A Internalin B; cell adhe 99.8 4.4E-18 1.5E-22 163.8 14.2 172 212-442 43-214 (291)
107 3e6j_A Variable lymphocyte rec 99.8 1.5E-17 5.1E-22 154.1 16.1 154 29-183 20-174 (229)
108 2xot_A Amphoterin-induced prot 99.8 6.1E-18 2.1E-22 168.3 14.3 154 29-182 19-177 (361)
109 3e6j_A Variable lymphocyte rec 99.7 2.4E-17 8.1E-22 152.8 16.9 151 9-160 21-175 (229)
110 1m9s_A Internalin B; cell inva 99.7 1.3E-17 4.6E-22 175.8 14.9 191 73-277 21-211 (605)
111 1h6t_A Internalin B; cell adhe 99.7 5.2E-17 1.8E-21 156.3 16.9 170 71-276 44-213 (291)
112 1m9s_A Internalin B; cell inva 99.7 1E-17 3.4E-22 176.7 11.7 189 28-253 21-211 (605)
113 1w8a_A SLIT protein; signaling 99.7 1.5E-17 5.3E-22 149.5 8.9 115 355-469 53-167 (192)
114 1xeu_A Internalin C; cellular 99.7 7.2E-17 2.5E-21 152.8 12.1 169 95-277 18-186 (263)
115 1xeu_A Internalin C; cellular 99.7 3.7E-17 1.3E-21 154.8 8.9 167 193-443 21-187 (263)
116 4ezg_A Putative uncharacterize 99.7 3.7E-16 1.3E-20 141.2 14.1 64 208-275 129-193 (197)
117 4ezg_A Putative uncharacterize 99.7 3.9E-16 1.3E-20 141.0 13.4 152 71-252 42-194 (197)
118 4b8c_D Glucose-repressible alc 99.7 2.3E-17 7.9E-22 178.4 5.4 187 28-225 173-369 (727)
119 1dce_A Protein (RAB geranylger 99.7 8.8E-19 3E-23 183.7 -5.6 205 70-296 346-567 (567)
120 3sb4_A Hypothetical leucine ri 99.7 2E-16 6.9E-21 155.2 10.7 248 167-444 48-313 (329)
121 4fdw_A Leucine rich hypothetic 99.6 1.4E-14 4.9E-19 145.1 22.2 265 7-301 113-382 (401)
122 1dce_A Protein (RAB geranylger 99.6 2.5E-19 8.7E-24 187.8 -13.1 196 6-229 348-547 (567)
123 3sb4_A Hypothetical leucine ri 99.6 8E-16 2.7E-20 151.0 12.4 197 95-296 100-328 (329)
124 1w8a_A SLIT protein; signaling 99.6 1.5E-15 5.1E-20 136.5 12.0 89 69-157 50-139 (192)
125 2wfh_A SLIT homolog 2 protein 99.6 9.4E-16 3.2E-20 137.7 9.9 91 355-445 53-143 (193)
126 4b8c_D Glucose-repressible alc 99.6 8.2E-17 2.8E-21 174.1 2.8 209 7-227 173-403 (727)
127 4fdw_A Leucine rich hypothetic 99.6 3.9E-14 1.3E-18 141.9 21.7 271 95-441 112-383 (401)
128 2ell_A Acidic leucine-rich nuc 99.6 3.7E-15 1.3E-19 130.9 10.9 131 49-181 24-160 (168)
129 2wfh_A SLIT homolog 2 protein 99.6 1.1E-14 3.6E-19 130.8 12.8 106 50-156 32-138 (193)
130 2o6r_A Variable lymphocyte rec 99.6 1.7E-14 5.8E-19 127.8 14.0 109 50-158 29-138 (177)
131 2ell_A Acidic leucine-rich nuc 99.6 6.7E-15 2.3E-19 129.2 11.3 131 26-158 22-161 (168)
132 2je0_A Acidic leucine-rich nuc 99.6 3.7E-15 1.3E-19 128.0 8.3 127 48-176 16-148 (149)
133 2o6r_A Variable lymphocyte rec 99.6 1.8E-14 6.2E-19 127.6 12.7 128 9-136 9-140 (177)
134 4fs7_A Uncharacterized protein 99.5 7E-13 2.4E-17 133.4 21.3 148 139-297 157-305 (394)
135 2je0_A Acidic leucine-rich nuc 99.5 5.3E-14 1.8E-18 120.8 9.9 128 96-247 17-148 (149)
136 4fs7_A Uncharacterized protein 99.5 1E-12 3.4E-17 132.2 19.8 317 60-438 58-376 (394)
137 3g39_A Variable lymphocyte rec 99.5 8.2E-14 2.8E-18 122.3 10.1 92 355-446 29-120 (170)
138 1a9n_A U2A', U2A'; complex (nu 99.5 2E-13 6.8E-18 120.7 10.2 86 355-442 63-154 (176)
139 1a9n_A U2A', U2A'; complex (nu 99.4 2.2E-13 7.4E-18 120.5 9.7 125 28-157 19-153 (176)
140 2r9u_A Variable lymphocyte rec 99.4 3.1E-13 1.1E-17 119.0 10.2 92 355-446 32-123 (174)
141 1ds9_A Outer arm dynein; leuci 99.4 3.5E-15 1.2E-19 134.8 -4.8 83 355-441 92-185 (198)
142 3g39_A Variable lymphocyte rec 99.4 2.2E-12 7.6E-17 113.1 11.0 83 50-132 31-114 (170)
143 4gt6_A Cell surface protein; l 99.3 1E-10 3.5E-15 117.5 23.0 158 63-225 53-215 (394)
144 1ds9_A Outer arm dynein; leuci 99.3 1.6E-14 5.6E-19 130.4 -4.7 127 115-269 43-180 (198)
145 2r9u_A Variable lymphocyte rec 99.3 4.7E-12 1.6E-16 111.4 11.0 85 50-157 34-118 (174)
146 3un9_A NLR family member X1; l 99.3 2.6E-13 8.8E-18 134.7 -1.3 88 355-442 154-253 (372)
147 3un9_A NLR family member X1; l 99.3 1.2E-13 4E-18 137.1 -4.1 72 355-426 182-261 (372)
148 4gt6_A Cell surface protein; l 99.2 3.2E-09 1.1E-13 106.5 23.3 307 50-440 65-390 (394)
149 2ifg_A High affinity nerve gro 99.2 4.2E-11 1.4E-15 118.2 8.7 90 355-445 30-120 (347)
150 2ifg_A High affinity nerve gro 99.2 6.7E-11 2.3E-15 116.7 9.5 108 359-468 11-120 (347)
151 4h09_A Hypothetical leucine ri 99.0 3.8E-08 1.3E-12 98.1 23.5 122 50-178 47-168 (379)
152 4h09_A Hypothetical leucine ri 99.0 1.2E-07 4E-12 94.6 23.6 81 355-437 262-342 (379)
153 2ra8_A Uncharacterized protein 98.9 1.3E-09 4.5E-14 107.0 5.3 64 355-418 251-321 (362)
154 2ra8_A Uncharacterized protein 98.9 5.8E-09 2E-13 102.4 9.8 165 206-415 163-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 3.4E-08 1.2E-12 87.4 4.2 86 356-441 65-164 (185)
156 3rw6_A Nuclear RNA export fact 98.4 5.1E-07 1.7E-11 84.0 7.2 78 355-434 169-257 (267)
157 1io0_A Tropomodulin; LRR prote 98.4 7.4E-08 2.5E-12 85.2 1.0 63 355-417 92-164 (185)
158 3e4g_A ATP synthase subunit S, 98.3 1.7E-07 5.8E-12 80.8 1.2 83 357-439 62-150 (176)
159 3rw6_A Nuclear RNA export fact 98.3 5.9E-07 2E-11 83.5 4.8 84 361-446 148-238 (267)
160 3e4g_A ATP synthase subunit S, 98.1 2E-06 6.7E-11 74.1 4.2 82 50-131 62-150 (176)
161 3rfe_A Platelet glycoprotein I 97.4 0.00037 1.3E-08 57.0 6.8 60 384-445 12-72 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00013 4.5E-09 63.9 3.7 86 355-440 69-169 (197)
163 3rfe_A Platelet glycoprotein I 97.0 0.00091 3.1E-08 54.7 5.4 55 32-86 12-68 (130)
164 1pgv_A TMD-1, tropomodulin TMD 96.7 0.0015 5.1E-08 57.2 4.6 84 355-438 40-136 (197)
165 2lz0_A Uncharacterized protein 67.2 10 0.00034 28.6 5.4 46 368-414 8-53 (100)
166 2l8s_A Integrin alpha-1; trans 59.2 7.3 0.00025 25.3 2.7 23 498-520 8-30 (54)
167 2lz0_A Uncharacterized protein 58.5 26 0.00088 26.3 6.2 44 109-153 9-52 (100)
168 2l2t_A Receptor tyrosine-prote 57.1 5 0.00017 24.9 1.6 16 505-520 11-26 (44)
169 2knc_A Integrin alpha-IIB; tra 54.4 12 0.00041 24.4 3.1 24 497-520 10-33 (54)
170 2knc_B Integrin beta-3; transm 51.0 15 0.00051 26.3 3.5 6 504-509 15-20 (79)
171 2k1k_A Ephrin type-A receptor 41.5 21 0.00072 21.3 2.6 14 503-516 13-26 (38)
172 2k1a_A Integrin alpha-IIB; sin 39.7 50 0.0017 20.2 4.1 26 497-522 8-33 (42)
173 1pi7_A VPU protein, U ORF prot 33.0 54 0.0018 19.3 3.3 17 504-520 9-25 (36)
174 2l9u_A Receptor tyrosine-prote 31.2 27 0.00092 20.0 1.7 9 510-518 12-20 (40)
175 2klu_A T-cell surface glycopro 30.8 31 0.0011 23.3 2.3 12 510-521 18-29 (70)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-57 Score=498.29 Aligned_cols=471 Identities=34% Similarity=0.523 Sum_probs=307.4
Q ss_pred ccCCCccCEEECCCCCCC-CCCcccc--cCCcEEEccCCcccccCCCC-CCCccEEEeeeccCCcccCccCCCC-CCCCE
Q 008628 3 DIGVHTLYFLDLSRNFLT-SIDHLPW--KNLEYLTLDSNLLQGSLPDL-PPHMVELLISNNSLTGEIPSSFCNL-SSIQY 77 (559)
Q Consensus 3 ~~~l~~L~~L~ls~n~~~-~i~~~~~--~~L~~L~Ls~n~~~~~~~~~-~~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~ 77 (559)
++++++|++|++++|.++ .+|..+. ++|++|++++|.+.+.+|.. +.+|++|++++|.+++.+|..+.+. ++|++
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~ 298 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTG 298 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSE
T ss_pred cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCE
Confidence 345666666666666665 3343332 56666666666655544332 2255555555555555555544443 55555
Q ss_pred EEcccCcCccccCcccc-CcccCeEeccCCcCCCccchh-hcCCCCCCEEEcccCcCCCCC-------------------
Q 008628 78 LNLSNNSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQT-YAKGCNLSYLRLSGNHLEGPL------------------- 136 (559)
Q Consensus 78 L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~------------------- 136 (559)
|++++|.+.+.+|..+. +++|++|++++|.+.+.+|.. +..+++|++|++++|.+.+.+
T Consensus 299 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N 378 (768)
T 3rgz_A 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378 (768)
T ss_dssp EECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSS
T ss_pred EECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCC
Confidence 55555555555555544 555555555555554444433 455555555555555544444
Q ss_pred ------CccCCC--CCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCcccccCc-cCEEEccCCcCCCCc
Q 008628 137 ------PPSLIN--CVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNST-LEILDMRMNKFSGSL 207 (559)
Q Consensus 137 ------~~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~ 207 (559)
|..+.. +++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..++... |+.|++++|.+.+.+
T Consensus 379 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 458 (768)
T 3rgz_A 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458 (768)
T ss_dssp EEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcC
Confidence 444433 55566666666666666666666667777777777766666666655544 777777777776666
Q ss_pred chhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCC
Q 008628 208 PQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVP 287 (559)
Q Consensus 208 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 287 (559)
|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++.+|.+++.+++|++|++++|++.+.+|..+ ..
T Consensus 459 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~ 536 (768)
T 3rgz_A 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL--GD 536 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GG
T ss_pred CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH--cC
Confidence 7667777777777777777776667677777777777777777766677777777777777777777766666554 55
Q ss_pred CCCceEEEccCccceeecChHhhhcccccccccCCC-Ccccccccc-----------------------------cccce
Q 008628 288 FPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNS-TEVNYMRSL-----------------------------NYSYY 337 (559)
Q Consensus 288 l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~-~~~~~l~~~-----------------------------~~~~~ 337 (559)
+++|+.|++++|+++|.+|..++..... ....... ....++... .....
T Consensus 537 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 615 (768)
T 3rgz_A 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGK-IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615 (768)
T ss_dssp CTTCCEEECCSSEEESBCCGGGGTTTTC-BCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCT
T ss_pred CCCCCEEECCCCccCCcCChHHhcccch-hhhhccccccccccccccccccccccccccccccccchhhhcccccccccc
Confidence 6677777777777776666554332111 1111000 000000000 00000
Q ss_pred eeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCC
Q 008628 338 ESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 417 (559)
Q Consensus 338 ~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 417 (559)
.... ..+........+++|++||+++|+++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|++|||++|+++
T Consensus 616 ~~~~--~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 616 TSRV--YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp TSCE--EEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred ccce--ecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence 0000 00000111223678999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccCCCCCCeEeCcCCccccCCCCCCCCCccCCccccCCCCCCCCCCCCCCCCCCCC
Q 008628 418 GRIPTQLASLNYLSVLNLSNNQLEGPIPEGPQFNTFANDSYSGNSGLCGFPLSKSCSIDEAS 479 (559)
Q Consensus 418 ~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~c~~~~~~ 479 (559)
+.+|..+.++++|++|++++|+++|.+|...++.++....|.|||++||.|+. .|....+.
T Consensus 694 g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~~ 754 (768)
T 3rgz_A 694 GRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNAD 754 (768)
T ss_dssp ECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC--
T ss_pred CcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCccC
Confidence 99999999999999999999999999999999999999999999999999987 88765443
No 2
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.5e-51 Score=453.45 Aligned_cols=450 Identities=22% Similarity=0.240 Sum_probs=236.8
Q ss_pred CccCEEECCCCCCCCCCcccc---cCCcEEEccCCcccccC-CCCCC---CccEEEeeeccCCcccCccCCCCCCCCEEE
Q 008628 7 HTLYFLDLSRNFLTSIDHLPW---KNLEYLTLDSNLLQGSL-PDLPP---HMVELLISNNSLTGEIPSSFCNLSSIQYLN 79 (559)
Q Consensus 7 ~~L~~L~ls~n~~~~i~~~~~---~~L~~L~Ls~n~~~~~~-~~~~~---~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 79 (559)
++|++|||++|.++.++...+ ++|++|||++|...+.+ |..+. +|++|+|++|.+.+..|..|+++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 344455555554443322111 44555555544333322 22222 444555555555444444455555555555
Q ss_pred cccCcCccccCcc--cc-CcccCeEeccCCcCCCccc-hhhcCCCCCCEEEcccCcCCCCCCccCCCC--CCccEEEeeC
Q 008628 80 LSNNSLSGQIPQC--LG-NSTLETLDLRMNNFQGTIP-QTYAKGCNLSYLRLSGNHLEGPLPPSLINC--VKLHFLDVGN 153 (559)
Q Consensus 80 L~~n~~~~~~~~~--~~-~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l--~~L~~L~l~~ 153 (559)
+++|.+.+.+|.. +. +++|++|++++|.+++..+ ..|+++++|++|++++|.+.+..+..+..+ ++|++|++++
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence 5555444333322 33 4455555555555443322 344455555555555555444444444443 4444555555
Q ss_pred CcCCcccchhccCCCC------CCEEEccCCccccccCcccc--------------------------------------
Q 008628 154 NNLSGPIPEYLGNSTS------LSFLNVRNNSLSGPIPECLG-------------------------------------- 189 (559)
Q Consensus 154 n~l~~~~~~~~~~l~~------L~~L~l~~n~l~~~~~~~~~-------------------------------------- 189 (559)
|.+.+..|..+..+++ |+.|++++|.+.+..+..+.
T Consensus 184 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l 263 (844)
T 3j0a_A 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263 (844)
T ss_dssp SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence 4444444443333333 56666666654433322211
Q ss_pred -cCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEE
Q 008628 190 -NSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVL 268 (559)
Q Consensus 190 -~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 268 (559)
..+|+.|++++|.+.+..+..+..+++|+.|++++|++++..+..|.++++|++|++++|.+++..+..+..+++|++|
T Consensus 264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 343 (844)
T 3j0a_A 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343 (844)
T ss_dssp TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEE
T ss_pred ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEE
Confidence 1236666666666665556666666666777777666666666666666667777777776666666666666677777
Q ss_pred EcccccccccCCCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccCCCCcccccccccccceeeeEEeecC--
Q 008628 269 TLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKG-- 346 (559)
Q Consensus 269 ~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-- 346 (559)
++++|.+.+..+..+ ..+++|+.|++++|.+++... ++.++.+....+.+..++.... ....+.+..+.
T Consensus 344 ~L~~N~i~~~~~~~~--~~l~~L~~L~Ls~N~l~~i~~------~~~L~~L~l~~N~l~~l~~~~~-~l~~L~ls~N~l~ 414 (844)
T 3j0a_A 344 DLQKNHIAIIQDQTF--KFLEKLQTLDLRDNALTTIHF------IPSIPDIFLSGNKLVTLPKINL-TANLIHLSENRLE 414 (844)
T ss_dssp ECCSCCCCCCCSSCS--CSCCCCCEEEEETCCSCCCSS------CCSCSEEEEESCCCCCCCCCCT-TCCEEECCSCCCC
T ss_pred ECCCCCCCccChhhh--cCCCCCCEEECCCCCCCcccC------CCCcchhccCCCCccccccccc-ccceeecccCccc
Confidence 777666654443333 456666666666666654221 2333333333333222211100 00001111000
Q ss_pred --chhhHHHhhccccEEEcCCccccc------------------------------ccchhhhcCCCCCEEEccCCcCCC
Q 008628 347 --NNIQMERILTTFATIDLSSNRFQG------------------------------EISQVLGKLNSLKSLNISHNNLTG 394 (559)
Q Consensus 347 --~~~~~~~~l~~L~~L~ls~n~l~~------------------------------~~~~~~~~l~~L~~L~Ls~n~l~~ 394 (559)
........+++|++|++++|.+++ ..+..+.++++|+.|+|++|++++
T Consensus 415 ~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 494 (844)
T 3j0a_A 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS 494 (844)
T ss_dssp SSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTT
T ss_pred cCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccc
Confidence 000111124445555555554442 223445666777777777777777
Q ss_pred CCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEeCcCCccccCCCCCCCCCccCCccccCCCCCCCCCC
Q 008628 395 GIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPEGPQFNTFANDSYSGNSGLCGFPL 469 (559)
Q Consensus 395 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~ 469 (559)
..|..|..+++|++|+|++|++++..|..+. ++|+.|++++|++++..|.. +..+..+.+.+||+.|+++.
T Consensus 495 ~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 495 LPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred cChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence 7777777777777777777777766665554 67777777777777776643 45677788899999997764
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-50 Score=443.59 Aligned_cols=455 Identities=31% Similarity=0.449 Sum_probs=322.9
Q ss_pred cCCCccCEEECCCCCCC-CCCcccc--cCCcEEEccCCcccccCCCCC---CCccEEEeeeccCCcccCccCCCCCCCCE
Q 008628 4 IGVHTLYFLDLSRNFLT-SIDHLPW--KNLEYLTLDSNLLQGSLPDLP---PHMVELLISNNSLTGEIPSSFCNLSSIQY 77 (559)
Q Consensus 4 ~~l~~L~~L~ls~n~~~-~i~~~~~--~~L~~L~Ls~n~~~~~~~~~~---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 77 (559)
.++++|++|++++|.++ .+|. +. ++|++|++++|.+++.+|..+ .+|++|++++|.+.+..|.. .+++|++
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~ 273 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 273 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCE
T ss_pred ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCE
Confidence 57899999999999998 4555 43 999999999999998766544 49999999999999877765 8999999
Q ss_pred EEcccCcCccccCcccc--CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCcc-CCCCCCccEEEeeCC
Q 008628 78 LNLSNNSLSGQIPQCLG--NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPS-LINCVKLHFLDVGNN 154 (559)
Q Consensus 78 L~L~~n~~~~~~~~~~~--~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~l~~n 154 (559)
|++++|.+.+.+|..+. +++|++|++++|.+++..|..++.+++|++|++++|.+.+.+|.. +.++++|++|++++|
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence 99999999988998876 599999999999999999999999999999999999998778865 899999999999999
Q ss_pred cCCcccchhccCCC-CCCEEEccCCccccccCccccc---CccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccC
Q 008628 155 NLSGPIPEYLGNST-SLSFLNVRNNSLSGPIPECLGN---STLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGP 230 (559)
Q Consensus 155 ~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 230 (559)
.+.+.+|..+..++ +|++|++++|.+.+.++..+.. ..|+.|++++|.+++.+|..+..+++|+.|++++|.+++.
T Consensus 354 ~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 433 (768)
T 3rgz_A 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433 (768)
T ss_dssp EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESC
T ss_pred ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCc
Confidence 99888888877776 7777777777776655554433 2256666666655555555555555555555555555555
Q ss_pred CCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecChHhh
Q 008628 231 LPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYL 310 (559)
Q Consensus 231 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 310 (559)
.|..+..+++|++|++++|.+++.+|..+..+++|++|++++|++.+.+|..+ ..+++|++|++++|++++.+|.. +
T Consensus 434 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~L~~N~l~~~~p~~-~ 510 (768)
T 3rgz_A 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL--SNCTNLNWISLSNNRLTGEIPKW-I 510 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCCGG-G
T ss_pred ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH--hcCCCCCEEEccCCccCCcCChH-H
Confidence 55555555555555555555555555555555555555555555554444333 34455555555555555444433 2
Q ss_pred hcccccccccCCCCccc-------------------------ccccccccce--------e--eeE-Ee-----------
Q 008628 311 NGFKAMMHGDDNSTEVN-------------------------YMRSLNYSYY--------E--SIS-LT----------- 343 (559)
Q Consensus 311 ~~l~~l~~~~~~~~~~~-------------------------~l~~~~~~~~--------~--~~~-~~----------- 343 (559)
..++.|+.++...+.+. .++....... . ... ..
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 590 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSS
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccc
Confidence 33444444444443322 1111000000 0 000 00
Q ss_pred -----ecCchhhHHHhhccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCc
Q 008628 344 -----MKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAG 418 (559)
Q Consensus 344 -----~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 418 (559)
..+........+..+..++++.|.+.|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|+|++|.+++
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 670 (768)
T 3rgz_A 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670 (768)
T ss_dssp EEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred ccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC
Confidence 000000011123344445555566666666667778899999999999999999999999999999999999999
Q ss_pred cCcccccCCCCCCeEeCcCCccccCCCCC-CCCCccCCccccCCCCC
Q 008628 419 RIPTQLASLNYLSVLNLSNNQLEGPIPEG-PQFNTFANDSYSGNSGL 464 (559)
Q Consensus 419 ~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~~~~~~~~~n~~l 464 (559)
.+|..+.++++|+.|++++|+++|.+|.. ..+..+..+.+.+|+-.
T Consensus 671 ~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred CCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 99999999999999999999999999975 45667777777777543
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.1e-47 Score=411.84 Aligned_cols=443 Identities=21% Similarity=0.227 Sum_probs=273.7
Q ss_pred cCCCccCEEECCCCCCCCCCcc-cc--cCCcEEEccCCcccccCCCCCC---CccEEEeeeccCCcccCccCCCCCCCCE
Q 008628 4 IGVHTLYFLDLSRNFLTSIDHL-PW--KNLEYLTLDSNLLQGSLPDLPP---HMVELLISNNSLTGEIPSSFCNLSSIQY 77 (559)
Q Consensus 4 ~~l~~L~~L~ls~n~~~~i~~~-~~--~~L~~L~Ls~n~~~~~~~~~~~---~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 77 (559)
+++++|++|++++|.++.++.. +. ++|++|++++|.+.+..|..+. +|++|++++|.+++..+..++++++|++
T Consensus 54 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~ 133 (606)
T 3t6q_A 54 SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133 (606)
T ss_dssp TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCE
T ss_pred ccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccE
Confidence 4455555555555555533222 21 5555555555555544443332 5555555555555444445555555555
Q ss_pred EEcccCcCccc-cCccccCcccCeEeccCCcCCCccchhhcCCCCCC--EEEcccCcCCCCCCccCCCC-----------
Q 008628 78 LNLSNNSLSGQ-IPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLS--YLRLSGNHLEGPLPPSLINC----------- 143 (559)
Q Consensus 78 L~L~~n~~~~~-~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~--~L~L~~n~~~~~~~~~l~~l----------- 143 (559)
|++++|.+.+. .|..+.+++|++|++++|.+++..|..++.+++|+ +|++++|.+.+..|..+...
T Consensus 134 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~ 213 (606)
T 3t6q_A 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213 (606)
T ss_dssp EECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS
T ss_pred EECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCch
Confidence 55555555432 23333355555555555555555555555555555 55555555554433332211
Q ss_pred ----------------------------------------CCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccc
Q 008628 144 ----------------------------------------VKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGP 183 (559)
Q Consensus 144 ----------------------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 183 (559)
.+|++|++++|.+.+..+..|..+++|++|++++|.+. .
T Consensus 214 ~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~ 292 (606)
T 3t6q_A 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-E 292 (606)
T ss_dssp CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-C
T ss_pred hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-C
Confidence 03455555555555555555666666666666666666 3
Q ss_pred cCccccc-CccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCc-cccCCCCCcEEEeecCccCccc--chhh
Q 008628 184 IPECLGN-STLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPP-SLVNCRHLEVIDVGNNQINETF--PHWL 259 (559)
Q Consensus 184 ~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~--~~~~ 259 (559)
+|..+.. .+|+.|++++|.+.+..|..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+++.. +..+
T Consensus 293 lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 372 (606)
T 3t6q_A 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372 (606)
T ss_dssp CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT
T ss_pred CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhc
Confidence 4444333 3366666666666655566666666666666666666544433 3666666666666666666544 5556
Q ss_pred cCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccCCCCcccccccccccceee
Q 008628 260 DVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYES 339 (559)
Q Consensus 260 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~ 339 (559)
..+++|++|++++|++.+..+..+ ..+++|+.|++++|.+.+..+...+..++.|+.++...+.+.....
T Consensus 373 ~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------- 442 (606)
T 3t6q_A 373 RNLSHLQSLNLSYNEPLSLKTEAF--KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE-------- 442 (606)
T ss_dssp TTCTTCCEEECCSCSCEEECTTTT--TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT--------
T ss_pred ccCCCCCEEECCCCcCCcCCHHHh--cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCH--------
Confidence 666666666666666665544443 4566666666666666665554445556666666555544322211
Q ss_pred eEEeecCchhhHHHhhccccEEEcCCcccccc---cchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcC
Q 008628 340 ISLTMKGNNIQMERILTTFATIDLSSNRFQGE---ISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKL 416 (559)
Q Consensus 340 ~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 416 (559)
.....+++|++|++++|.+++. .+..+..+++|++|++++|++++..|..|..+++|++|++++|++
T Consensus 443 ----------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 443 ----------QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512 (606)
T ss_dssp ----------TTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ----------HHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc
Confidence 1112277899999999998763 235688899999999999999988888899999999999999999
Q ss_pred CccCcccccCCCCCCeEeCcCCccccCCCCC-CCCCccCCccccCCCCCCCCC
Q 008628 417 AGRIPTQLASLNYLSVLNLSNNQLEGPIPEG-PQFNTFANDSYSGNSGLCGFP 468 (559)
Q Consensus 417 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~ 468 (559)
++..|..+.+++.| +|++++|++++..|.. ..+..+..+.+.+||..|+++
T Consensus 513 ~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 513 TSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 98888899999999 9999999999776653 345667778888998888654
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.8e-46 Score=400.89 Aligned_cols=437 Identities=18% Similarity=0.117 Sum_probs=306.3
Q ss_pred cCEEECCCCCCCCCCcccccCCcEEEccCCcccccCCCCCC---CccEEEeeeccCCcccCccCCCCCCCCEEEcccCcC
Q 008628 9 LYFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLPP---HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSL 85 (559)
Q Consensus 9 L~~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~~~~~~~~---~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~ 85 (559)
-+++++++++++++|..+.++|++|++++|.+++..+..+. +|++|++++|.+++..|.+|+++++|++|++++|.+
T Consensus 13 ~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence 35788888888888887778888888888888877664443 788888888888877788888888888888888888
Q ss_pred ccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCC-CCCccCCCCCCccEEEeeCCcCCcccchh
Q 008628 86 SGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEG-PLPPSLINCVKLHFLDVGNNNLSGPIPEY 163 (559)
Q Consensus 86 ~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 163 (559)
.+..|..+. +++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~ 172 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT
T ss_pred cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhh
Confidence 877677777 8888888888888887776778888888888888888875 46788888888888888888887766666
Q ss_pred ccCCCCCC----EEEccCCccccccCcccccCccCEEEccCCcCC-----------------------------------
Q 008628 164 LGNSTSLS----FLNVRNNSLSGPIPECLGNSTLEILDMRMNKFS----------------------------------- 204 (559)
Q Consensus 164 ~~~l~~L~----~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~----------------------------------- 204 (559)
+..+++|+ +|++++|.+.+..+..+...+|+.|++++|.+.
T Consensus 173 ~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~ 252 (606)
T 3vq2_A 173 LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252 (606)
T ss_dssp THHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCG
T ss_pred hhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccCh
Confidence 65554443 566666666654444443333444444444321
Q ss_pred ---------------------------------------------CCcchhhcCCCCccEEEccCCccccCCCc------
Q 008628 205 ---------------------------------------------GSLPQTFAKSCVLVSLNLNGNRLEGPLPP------ 233 (559)
Q Consensus 205 ---------------------------------------------~~~~~~~~~~~~L~~L~L~~n~~~~~~~~------ 233 (559)
..+| .+..+++|++|++++|.+ +.+|.
T Consensus 253 ~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L 330 (606)
T 3vq2_A 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTLDLPFL 330 (606)
T ss_dssp GGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCCCCSSC
T ss_pred HHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccccCCCCcc
Confidence 0122 344555666666666666 34442
Q ss_pred --------------cccCCCCCcEEEeecCccCcc--cchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEcc
Q 008628 234 --------------SLVNCRHLEVIDVGNNQINET--FPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLS 297 (559)
Q Consensus 234 --------------~l~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~ 297 (559)
.+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+.. .. +..+++|+.|+++
T Consensus 331 ~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~--~~~l~~L~~L~l~ 407 (606)
T 3vq2_A 331 KSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-AN--FMGLEELQHLDFQ 407 (606)
T ss_dssp CEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CC--CTTCTTCCEEECT
T ss_pred ceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hh--ccCCCCCCeeECC
Confidence 223344444444444444433 2444555555555555555554322 11 2445556666666
Q ss_pred CccceeecChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCccccc-ccchhh
Q 008628 298 YNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQG-EISQVL 376 (559)
Q Consensus 298 ~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~-~~~~~~ 376 (559)
+|.+.+..+...+..++.|+.++...+....... .....+++|++|++++|.+.+ .+|..+
T Consensus 408 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 469 (606)
T 3vq2_A 408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD------------------GIFLGLTSLNTLKMAGNSFKDNTLSNVF 469 (606)
T ss_dssp TSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT------------------TTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred CCccCCccChhhhhccccCCEEECcCCCCCccch------------------hhhcCCCCCCEEECCCCcCCCcchHHhh
Confidence 6665555443344455555555555444322110 112237899999999999998 478889
Q ss_pred hcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEeCcCCccccCCCCC-CCCC-ccC
Q 008628 377 GKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPEG-PQFN-TFA 454 (559)
Q Consensus 377 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~-~~~ 454 (559)
..+++|++|+|++|++++..|..|..+++|++|++++|++++..|..+.++++|++|++++|+++ .+|.. ..+. .+.
T Consensus 470 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~ 548 (606)
T 3vq2_A 470 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLA 548 (606)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCC
T ss_pred ccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCc
Confidence 99999999999999999999999999999999999999999998999999999999999999998 45543 3343 477
Q ss_pred CccccCCCCCCCCCC
Q 008628 455 NDSYSGNSGLCGFPL 469 (559)
Q Consensus 455 ~~~~~~n~~lc~~~~ 469 (559)
.+.+.+||..|+++.
T Consensus 549 ~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 549 FFNLTNNSVACICEH 563 (606)
T ss_dssp EEECCSCCCCCSSTT
T ss_pred EEEccCCCcccCCcc
Confidence 888999999998775
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.7e-45 Score=394.92 Aligned_cols=435 Identities=20% Similarity=0.182 Sum_probs=332.0
Q ss_pred cCEEECCCCCCCCCCcccccCCcEEEccCCcccccCCCCCC---CccEEEeeeccCCcccCccCCCCCCCCEEEcccCcC
Q 008628 9 LYFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLPP---HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSL 85 (559)
Q Consensus 9 L~~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~~~~~~~~---~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~ 85 (559)
-+.+++++.+++++|..+.+++++||+++|.+++..|..+. +|++|++++|.+++..|.+|+++++|++|++++|.+
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 45799999999999999999999999999999988776655 899999999999988899999999999999999999
Q ss_pred ccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhc
Q 008628 86 SGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYL 164 (559)
Q Consensus 86 ~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 164 (559)
.+..|..+. +++|++|++++|.+++..+..++++++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 173 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM 173 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHH
T ss_pred cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhh
Confidence 988888888 9999999999999998878889999999999999999997554556669999999999999998888889
Q ss_pred cCCCCCC--EEEccCCccccccCcccccC---------------------------------------------------
Q 008628 165 GNSTSLS--FLNVRNNSLSGPIPECLGNS--------------------------------------------------- 191 (559)
Q Consensus 165 ~~l~~L~--~L~l~~n~l~~~~~~~~~~~--------------------------------------------------- 191 (559)
..+++|+ .|++++|.+.+..|..+...
T Consensus 174 ~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~ 253 (606)
T 3t6q_A 174 SSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253 (606)
T ss_dssp HTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG
T ss_pred hhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhc
Confidence 9999999 89999999987766554432
Q ss_pred -ccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEc
Q 008628 192 -TLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTL 270 (559)
Q Consensus 192 -~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 270 (559)
.++.|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 254 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred CceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 4677788888888777777888899999999999888 67778888899999999999988888888888999999999
Q ss_pred ccccccccCCCCCCCCCCCCceEEEccCccceeecC-hHhhhcccccccccCCCCcccccccccccce-eeeEEeecCch
Q 008628 271 RSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLP-IWYLNGFKAMMHGDDNSTEVNYMRSLNYSYY-ESISLTMKGNN 348 (559)
Q Consensus 271 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~ 348 (559)
++|.+.+.++... +..+++|++|++++|.+++..+ ...+..++.|+.++...+.+........... ....+...++.
T Consensus 333 ~~n~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 333 KGNTKRLELGTGC-LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp CSCSSCCBCCSST-TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred CCCCcccccchhh-hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence 9998876665432 3568889999999998877641 2235667778877777765443321111111 00111111111
Q ss_pred h------hHHHhhccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCC---CCccccCCCCCCEEeCCCCcCCcc
Q 008628 349 I------QMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGG---IPSSLRNLTELESLDLSSNKLAGR 419 (559)
Q Consensus 349 ~------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~ 419 (559)
+ .....+++|++|++++|.+++..|..+..+++|++|++++|++++. .+..+..+++|++|++++|.+.+.
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence 1 1122356666666666666666666666666666666666666542 224566666666666666666666
Q ss_pred CcccccCCCCCCeEeCcCCccccCCC
Q 008628 420 IPTQLASLNYLSVLNLSNNQLEGPIP 445 (559)
Q Consensus 420 ~p~~l~~l~~L~~L~l~~n~l~~~~p 445 (559)
.|..|..+++|++|++++|++++..|
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~ 517 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSI 517 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGG
T ss_pred ChhhhccccCCCEEECCCCccCcCCh
Confidence 66666666666666666666666554
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2e-45 Score=399.60 Aligned_cols=461 Identities=21% Similarity=0.203 Sum_probs=256.9
Q ss_pred CccCEEECCCCCCCCCCcccc---cCCcEEEccCCcccccCCCCC---CCccEEEeeeccCCcccCccCCCCCCCCEEEc
Q 008628 7 HTLYFLDLSRNFLTSIDHLPW---KNLEYLTLDSNLLQGSLPDLP---PHMVELLISNNSLTGEIPSSFCNLSSIQYLNL 80 (559)
Q Consensus 7 ~~L~~L~ls~n~~~~i~~~~~---~~L~~L~Ls~n~~~~~~~~~~---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 80 (559)
+++++|++++|.++.++...+ ++|++|++++|.+.+..|..+ .+|++|++++|.+++..+.+|+++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 356666666666665554333 666666666666665555433 25666666666666444445666666666666
Q ss_pred ccCcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCC--CCCCccEEEeeCCcCC
Q 008628 81 SNNSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLI--NCVKLHFLDVGNNNLS 157 (559)
Q Consensus 81 ~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~--~l~~L~~L~l~~n~l~ 157 (559)
++|.+.+..|..+. +++|++|++++|.+++..|..++++++|++|++++|.+.+..+..+. .+++|++|++++|.+.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 66666544444454 66666666666666655555566666666666666665544333322 3355555555555555
Q ss_pred cccchhccCC---------------------------CCCCEEEccCCccccccCcccccC---ccCEEEccCCcCCCCc
Q 008628 158 GPIPEYLGNS---------------------------TSLSFLNVRNNSLSGPIPECLGNS---TLEILDMRMNKFSGSL 207 (559)
Q Consensus 158 ~~~~~~~~~l---------------------------~~L~~L~l~~n~l~~~~~~~~~~~---~L~~L~l~~n~~~~~~ 207 (559)
+..|..+..+ ++|+.|++++|.+.+..+..+... +|+.|++++|.+.+..
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 4444333322 233444444444444333333221 1444444444444433
Q ss_pred chhhcCCCCccEEEccCCccccCCCc---------------------------------cccCCCCCcEEEeecCccCcc
Q 008628 208 PQTFAKSCVLVSLNLNGNRLEGPLPP---------------------------------SLVNCRHLEVIDVGNNQINET 254 (559)
Q Consensus 208 ~~~~~~~~~L~~L~L~~n~~~~~~~~---------------------------------~l~~l~~L~~L~l~~n~l~~~ 254 (559)
+..+..+++|++|++++|.+++..+. .|..+++|++|++++|.+++.
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~ 344 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence 44444444444444444443332222 344556666666666766666
Q ss_pred cchhhcCCCCCcEEEccccc----------------------------ccccCCCCCCCCCCCCceEEEccCccceeecC
Q 008628 255 FPHWLDVLPELQVLTLRSNR----------------------------FRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLP 306 (559)
Q Consensus 255 ~~~~~~~l~~L~~L~L~~n~----------------------------l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 306 (559)
.+..+.++++|++|++++|. +.+..+.. +..+++|+.|++++|.+++.++
T Consensus 345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~ 422 (680)
T 1ziw_A 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA--FSWLGHLEVLDLGLNEIGQELT 422 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT--TTTCTTCCEEECCSSCCEEECC
T ss_pred ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh--hhCCCCCCEEeCCCCcCccccC
Confidence 66666666666666666554 32222222 2456778888888888877776
Q ss_pred hHhhhcccccccccCCCCcccccccccccce---ee------------------------eEEeecCchh-----hHHHh
Q 008628 307 IWYLNGFKAMMHGDDNSTEVNYMRSLNYSYY---ES------------------------ISLTMKGNNI-----QMERI 354 (559)
Q Consensus 307 ~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~---~~------------------------~~~~~~~~~~-----~~~~~ 354 (559)
...+.+++.++.++...+....+........ .. ..+...++.+ .....
T Consensus 423 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 502 (680)
T 1ziw_A 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 502 (680)
T ss_dssp SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc
Confidence 6666677777777766655332211111000 00 0111111111 11223
Q ss_pred hccccEEEcCCcccccccc--------hhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccC
Q 008628 355 LTTFATIDLSSNRFQGEIS--------QVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLAS 426 (559)
Q Consensus 355 l~~L~~L~ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 426 (559)
+++|++|++++|.+++..+ ..+.++++|++|+|++|+++...+..|.++++|++|++++|.+++..+..|..
T Consensus 503 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 582 (680)
T 1ziw_A 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582 (680)
T ss_dssp CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCC
Confidence 4556666666666654321 12556666677777777666555556777777777777777777666666777
Q ss_pred CCCCCeEeCcCCccccCCCCCC--CCCccCCccccCCCCCCCCCC
Q 008628 427 LNYLSVLNLSNNQLEGPIPEGP--QFNTFANDSYSGNSGLCGFPL 469 (559)
Q Consensus 427 l~~L~~L~l~~n~l~~~~p~~~--~~~~~~~~~~~~n~~lc~~~~ 469 (559)
+++|+.|++++|++++..|... .+..+..+.+.+||+.|+++.
T Consensus 583 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 583 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 7778888888887776555321 356677788899999998764
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.4e-46 Score=410.80 Aligned_cols=444 Identities=21% Similarity=0.204 Sum_probs=357.4
Q ss_pred CEEECCCCCCCCCCcccccCCcEEEccCCcccccCCCCCC---CccEEEeeeccCCccc-CccCCCCCCCCEEEcccCcC
Q 008628 10 YFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLPP---HMVELLISNNSLTGEI-PSSFCNLSSIQYLNLSNNSL 85 (559)
Q Consensus 10 ~~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~~~~~~~~---~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~~ 85 (559)
+..|+++++++.+|. ..++|++|||++|.+++..+..+. +|++|+|++|...+.+ |.+|+++++|++|+|++|.+
T Consensus 7 ~~~dcs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp EEEEESCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC
T ss_pred eEEEccCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC
Confidence 578999999999999 779999999999999988776655 9999999999655444 88899999999999999999
Q ss_pred ccccCcccc-CcccCeEeccCCcCCCccchh--hcCCCCCCEEEcccCcCCCCCC-ccCCCCCCccEEEeeCCcCCcccc
Q 008628 86 SGQIPQCLG-NSTLETLDLRMNNFQGTIPQT--YAKGCNLSYLRLSGNHLEGPLP-PSLINCVKLHFLDVGNNNLSGPIP 161 (559)
Q Consensus 86 ~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~--~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~ 161 (559)
.+..|..+. +++|++|++++|.+++..|.. ++++++|++|++++|.+.+..+ ..|+++++|++|++++|.+.+..+
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 988898888 999999999999999866655 8999999999999999987655 579999999999999999998888
Q ss_pred hhccCC--CCCCEEEccCCccccccCccccc-------CccCEEEccCCcCCCCcchhhcC-------------------
Q 008628 162 EYLGNS--TSLSFLNVRNNSLSGPIPECLGN-------STLEILDMRMNKFSGSLPQTFAK------------------- 213 (559)
Q Consensus 162 ~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~-------~~L~~L~l~~n~~~~~~~~~~~~------------------- 213 (559)
..+..+ ++|+.|++++|.+.+..+..++. ..|+.|++++|.+.+..+..+..
T Consensus 166 ~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~ 245 (844)
T 3j0a_A 166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245 (844)
T ss_dssp GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence 888877 89999999999998876654432 34999999999876555443321
Q ss_pred -------------------CCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEccccc
Q 008628 214 -------------------SCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNR 274 (559)
Q Consensus 214 -------------------~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 274 (559)
.++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus 246 ~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325 (844)
T ss_dssp SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC
T ss_pred cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC
Confidence 2689999999999998889999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhh-HHH
Q 008628 275 FRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQ-MER 353 (559)
Q Consensus 275 l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~ 353 (559)
+.+..+..+ ..+++|+.|++++|.+.+..+. .+.+++.|+.++...+.+..+... .....+.+.. +.+. ...
T Consensus 326 l~~~~~~~~--~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~i~~~--~~L~~L~l~~--N~l~~l~~ 398 (844)
T 3j0a_A 326 LGELYSSNF--YGLPKVAYIDLQKNHIAIIQDQ-TFKFLEKLQTLDLRDNALTTIHFI--PSIPDIFLSG--NKLVTLPK 398 (844)
T ss_dssp CSCCCSCSC--SSCTTCCEEECCSCCCCCCCSS-CSCSCCCCCEEEEETCCSCCCSSC--CSCSEEEEES--CCCCCCCC
T ss_pred CCccCHHHh--cCCCCCCEEECCCCCCCccChh-hhcCCCCCCEEECCCCCCCcccCC--CCcchhccCC--CCcccccc
Confidence 987766555 6789999999999999766554 356788888888888776554431 1112222222 1111 111
Q ss_pred hhccccEEEcCCcccccccc-hhhhcCCCCCEEEccCCcCCCC------------------------------CCccccC
Q 008628 354 ILTTFATIDLSSNRFQGEIS-QVLGKLNSLKSLNISHNNLTGG------------------------------IPSSLRN 402 (559)
Q Consensus 354 ~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~------------------------------~~~~~~~ 402 (559)
....++.|++++|.+++... ..+..+++|++|+|++|++++. .+..|.+
T Consensus 399 ~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 478 (844)
T 3j0a_A 399 INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG 478 (844)
T ss_dssp CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSC
T ss_pred cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcC
Confidence 24578899999999987533 3355788888888888877643 2244677
Q ss_pred CCCCCEEeCCCCcCCccCcccccCCCCCCeEeCcCCccccCCCCCCCCCccCCccccCCC
Q 008628 403 LTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPEGPQFNTFANDSYSGNS 462 (559)
Q Consensus 403 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~n~ 462 (559)
+++|++|+|++|.+++..|..|..+++|+.|++++|++++..|.... ..+..+.+.+|.
T Consensus 479 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQ 537 (844)
T ss_dssp BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEEC
T ss_pred cccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCc
Confidence 88899999999999988888899999999999999999876554432 555555555553
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.4e-44 Score=392.87 Aligned_cols=441 Identities=20% Similarity=0.215 Sum_probs=244.8
Q ss_pred ccCCCccCEEECCCCCCCCCCcccc---cCCcEEEccCCcccccCCCCC---CCccEEEeeeccCCcccCccCCCCCCCC
Q 008628 3 DIGVHTLYFLDLSRNFLTSIDHLPW---KNLEYLTLDSNLLQGSLPDLP---PHMVELLISNNSLTGEIPSSFCNLSSIQ 76 (559)
Q Consensus 3 ~~~l~~L~~L~ls~n~~~~i~~~~~---~~L~~L~Ls~n~~~~~~~~~~---~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 76 (559)
+.++++|++|++++|.++.++...+ ++|++|++++|.+.+..+..+ .+|++|++++|.+++..+..|+++++|+
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence 3455666666666666664433322 666666666666654433322 2566666666666555555566666666
Q ss_pred EEEcccCcCccccCcccc-CcccCeEeccCCcCCCccchhhc--CCCCCCEEEcccCcCCCCC-----------------
Q 008628 77 YLNLSNNSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYA--KGCNLSYLRLSGNHLEGPL----------------- 136 (559)
Q Consensus 77 ~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~--~l~~L~~L~L~~n~~~~~~----------------- 136 (559)
+|++++|.+.+..+..+. +++|++|++++|.+++..+..+. .+++|++|++++|.+.+..
T Consensus 125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 204 (680)
T 1ziw_A 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204 (680)
T ss_dssp EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTT
T ss_pred EEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccc
Confidence 666666655554444444 55555555555555544443332 2244444444444433322
Q ss_pred ----------------------------------CccCCCCC--CccEEEeeCCcCCcccchhccCCCCCCEEEccCCcc
Q 008628 137 ----------------------------------PPSLINCV--KLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSL 180 (559)
Q Consensus 137 ----------------------------------~~~l~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 180 (559)
|..+.+++ +|++|++++|.+.+..|..|..+++|++|++++|.+
T Consensus 205 ~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (680)
T 1ziw_A 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284 (680)
T ss_dssp CCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB
T ss_pred cccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCcc
Confidence 22333332 255555555555555555555555556666555555
Q ss_pred ccccCccccc----------------------------------CccCEEEccCCcCCCCcchhhcCCCCccEEEccCCc
Q 008628 181 SGPIPECLGN----------------------------------STLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNR 226 (559)
Q Consensus 181 ~~~~~~~~~~----------------------------------~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 226 (559)
.+..+..+.. .+|+.|++++|.+.+..+..+..+++|++|++++|.
T Consensus 285 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp SEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred CccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 5443332211 225555555555555545555555545444444432
Q ss_pred ----------------------------cccCCCccccCCCCCcEEEeecCccCcccc-hhhcCCCCCcEEEcccccccc
Q 008628 227 ----------------------------LEGPLPPSLVNCRHLEVIDVGNNQINETFP-HWLDVLPELQVLTLRSNRFRG 277 (559)
Q Consensus 227 ----------------------------~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~ 277 (559)
+++..+..+..+++|++|++++|.+++.++ ..+..+++|++|++++|++.+
T Consensus 365 ~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 444 (680)
T 1ziw_A 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444 (680)
T ss_dssp SCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE
T ss_pred hhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcce
Confidence 222233334444444444444444433222 334444444444444444433
Q ss_pred cCCCCCCCCCCCCceEEEccCccce--eecChHhhhcccccccccCCCCcccccccccccce-eeeEEeecCchhh----
Q 008628 278 PIGDTKTRVPFPKLRIIDLSYNRFT--GVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYY-ESISLTMKGNNIQ---- 350 (559)
Q Consensus 278 ~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~---- 350 (559)
..+..+ ..+++|+.|++++|.+. +..|. .+.+++.|+.++...+.+..+........ ....+...++.+.
T Consensus 445 ~~~~~~--~~~~~L~~L~l~~n~l~~~~~~p~-~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~ 521 (680)
T 1ziw_A 445 LTRNSF--ALVPSLQRLMLRRVALKNVDSSPS-PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWK 521 (680)
T ss_dssp CCTTTT--TTCTTCCEEECTTSCCBCTTCSSC-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGS
T ss_pred eChhhh--hcCcccccchhccccccccccCCc-ccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccch
Confidence 222221 22333333333333332 11221 23344555555555554443332211111 1111222222221
Q ss_pred ---------HHHhhccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCc
Q 008628 351 ---------MERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIP 421 (559)
Q Consensus 351 ---------~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 421 (559)
....+++|++|++++|.++.+.+..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++++..|
T Consensus 522 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~ 601 (680)
T 1ziw_A 522 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601 (680)
T ss_dssp TTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCH
T ss_pred hhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccCh
Confidence 12347899999999999997666779999999999999999998888889999999999999999999888
Q ss_pred cccc-CCCCCCeEeCcCCccccCCCC
Q 008628 422 TQLA-SLNYLSVLNLSNNQLEGPIPE 446 (559)
Q Consensus 422 ~~l~-~l~~L~~L~l~~n~l~~~~p~ 446 (559)
..+. .+++|+.+++++|++.|.|+.
T Consensus 602 ~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 602 KVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp HHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred hHhcccccccCEEEccCCCcccCCcc
Confidence 8887 789999999999999999975
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-44 Score=383.34 Aligned_cols=452 Identities=21% Similarity=0.180 Sum_probs=363.8
Q ss_pred ccCEEECCCCCCCCCCcccccCCcEEEccCCcccccCCCCC---CCccEEEeeeccCCcccCccCCCCCCCCEEEcccCc
Q 008628 8 TLYFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLP---PHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNS 84 (559)
Q Consensus 8 ~L~~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~~~~~~~---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 84 (559)
..+.++.++.+++++|..+.+++++||+++|.+++..+..+ ++|++|++++|.+++..+..|+++++|++|++++|.
T Consensus 8 ~~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 8 PNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp TTTEEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CCcEEEeCCCCccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence 35678999999999999888999999999999988766544 389999999999998888889999999999999999
Q ss_pred CccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCC-CCCccCCCCCCccEEEeeCCcCCcccch
Q 008628 85 LSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEG-PLPPSLINCVKLHFLDVGNNNLSGPIPE 162 (559)
Q Consensus 85 ~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 162 (559)
+.+..|..+. +++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+.+..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~ 167 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence 9877777787 9999999999999987766679999999999999999886 4688999999999999999999988788
Q ss_pred hccCCCCC----CEEEccCCccccccCcccccCccCEEEccCC-------------------------------------
Q 008628 163 YLGNSTSL----SFLNVRNNSLSGPIPECLGNSTLEILDMRMN------------------------------------- 201 (559)
Q Consensus 163 ~~~~l~~L----~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n------------------------------------- 201 (559)
.+..+++| +.+++++|.+.+..+..+....|+.|++++|
T Consensus 168 ~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 247 (570)
T 2z63_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247 (570)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECC
T ss_pred HccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcc
Confidence 88888888 8999999999988787777667888887776
Q ss_pred ---------------------cCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhc
Q 008628 202 ---------------------KFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLD 260 (559)
Q Consensus 202 ---------------------~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 260 (559)
.+.+..+..+..+++|++|++++|.++ .+|..+..+ +|++|++++|.+.. +|. .
T Consensus 248 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~-l~~--~ 322 (570)
T 2z63_A 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQ-FPT--L 322 (570)
T ss_dssp TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSS-CCB--C
T ss_pred hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccc-cCc--c
Confidence 223345566777889999999999888 577778888 89999999998874 333 4
Q ss_pred CCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecC-hHhhhcccccccccCCCCcccccccccccce-e
Q 008628 261 VLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLP-IWYLNGFKAMMHGDDNSTEVNYMRSLNYSYY-E 338 (559)
Q Consensus 261 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~-~ 338 (559)
.+++|++|++++|.+.+..+. ..+++|+.|++++|.+++... ...+.+++.|+.++...+....+... ...+ .
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~ 397 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQ 397 (570)
T ss_dssp BCSSCCEEEEESCBSCCBCCC----CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTT
T ss_pred cccccCEEeCcCCcccccccc----ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCC
Confidence 678889999999887765543 457899999999998876541 23356778888888877765444322 1111 1
Q ss_pred eeEEeecCchh------hHHHhhccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCC-CCCCccccCCCCCCEEeC
Q 008628 339 SISLTMKGNNI------QMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLT-GGIPSSLRNLTELESLDL 411 (559)
Q Consensus 339 ~~~~~~~~~~~------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L 411 (559)
...+...++.+ .....+++|++|++++|.+.+..|..+.++++|++|++++|.++ +.+|..+..+++|++|++
T Consensus 398 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l 477 (570)
T 2z63_A 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477 (570)
T ss_dssp CCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEEC
Confidence 11122222111 12334789999999999999888988999999999999999997 578889999999999999
Q ss_pred CCCcCCccCcccccCCCCCCeEeCcCCccccCCCCC-CCCCccCCccccCCCCCCCCCC
Q 008628 412 SSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPEG-PQFNTFANDSYSGNSGLCGFPL 469 (559)
Q Consensus 412 s~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~~ 469 (559)
++|++++..|..+..+++|++|++++|++++..|.. ..+..+..+.+.+|+..|.+|.
T Consensus 478 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 478 SQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 999999988999999999999999999999877653 4567778888899988887653
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5e-44 Score=383.41 Aligned_cols=413 Identities=23% Similarity=0.201 Sum_probs=311.7
Q ss_pred CccCEEECCCCCCCCCCcccc---cCCcEEEccCCcccccCCCCCC---CccEEEeeeccCCcccCccCCCCCCCCEEEc
Q 008628 7 HTLYFLDLSRNFLTSIDHLPW---KNLEYLTLDSNLLQGSLPDLPP---HMVELLISNNSLTGEIPSSFCNLSSIQYLNL 80 (559)
Q Consensus 7 ~~L~~L~ls~n~~~~i~~~~~---~~L~~L~Ls~n~~~~~~~~~~~---~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 80 (559)
+++++|++++|.++.++...+ ++|++|++++|.+++..|..+. +|++|++++|.+++..|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 568888888888886665333 7888888888888877665543 7888888888888777788888888888888
Q ss_pred ccCcCccccCcccc-CcccCeEeccCCcCCC-ccchhhcCCCCCCEEEcccCcCCCCCCccCCCCC--------------
Q 008628 81 SNNSLSGQIPQCLG-NSTLETLDLRMNNFQG-TIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCV-------------- 144 (559)
Q Consensus 81 ~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~-------------- 144 (559)
++|.+.+..+..+. +++|++|++++|.+.+ .+|..++++++|++|++++|.+.+..+..++.++
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 88888765556666 7888888888888775 4577788888888888888877655444333222
Q ss_pred -------------CccEEEeeCCcCCc-----------------------------------------------------
Q 008628 145 -------------KLHFLDVGNNNLSG----------------------------------------------------- 158 (559)
Q Consensus 145 -------------~L~~L~l~~n~l~~----------------------------------------------------- 158 (559)
+|++|++++|.+.+
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence 34445554443320
Q ss_pred ---------------------------ccchhccCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchhh
Q 008628 159 ---------------------------PIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTF 211 (559)
Q Consensus 159 ---------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 211 (559)
.+| .+..+++|++|++++|.+ +.+|.. ....|+.|++++|...+.. .+
T Consensus 272 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~--~~ 346 (606)
T 3vq2_A 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISF--KK 346 (606)
T ss_dssp TTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEEC--CC
T ss_pred ccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccch--hh
Confidence 111 233444555556666655 344433 3444666666666443222 55
Q ss_pred cCCCCccEEEccCCccccC--CCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCC
Q 008628 212 AKSCVLVSLNLNGNRLEGP--LPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFP 289 (559)
Q Consensus 212 ~~~~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 289 (559)
..+++|++|++++|.+++. .+..+..+++|++|++++|.+++ +|..+..+++|++|++++|++.+..+.. .+..++
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~ 424 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFS-AFLSLE 424 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTT-TTTTCT
T ss_pred ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChh-hhhccc
Confidence 6788899999999988865 37889999999999999999876 4577889999999999999998776522 236789
Q ss_pred CceEEEccCccceeecChHhhhcccccccccCCCCcccc--cccccccceeeeEEeecCchhhHHHhhccccEEEcCCcc
Q 008628 290 KLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNY--MRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNR 367 (559)
Q Consensus 290 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~ 367 (559)
+|++|++++|.+.+..|.. +..++.|+.++...+.+.. ++.. ...+++|++|++++|.
T Consensus 425 ~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~-------------------~~~l~~L~~L~Ls~n~ 484 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGI-FLGLTSLNTLKMAGNSFKDNTLSNV-------------------FANTTNLTFLDLSKCQ 484 (606)
T ss_dssp TCCEEECTTSCCEECCTTT-TTTCTTCCEEECTTCEEGGGEECSC-------------------CTTCTTCCEEECTTSC
T ss_pred cCCEEECcCCCCCccchhh-hcCCCCCCEEECCCCcCCCcchHHh-------------------hccCCCCCEEECCCCc
Confidence 9999999999999877754 5678888888887766443 1111 1127899999999999
Q ss_pred cccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCC-CCCeEeCcCCccccCCCC
Q 008628 368 FQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLN-YLSVLNLSNNQLEGPIPE 446 (559)
Q Consensus 368 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~p~ 446 (559)
+++..|..+..+++|++|+|++|++++.+|..|..+++|++|++++|+++ .+|..+..++ +|++|++++|++.|.++.
T Consensus 485 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 99999999999999999999999999999999999999999999999999 5677799997 599999999999999975
Q ss_pred C
Q 008628 447 G 447 (559)
Q Consensus 447 ~ 447 (559)
.
T Consensus 564 ~ 564 (606)
T 3vq2_A 564 Q 564 (606)
T ss_dssp H
T ss_pred H
Confidence 3
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.4e-45 Score=389.02 Aligned_cols=412 Identities=18% Similarity=0.228 Sum_probs=237.2
Q ss_pred CccCEEECCCCCCC-CCCcccc--cCCcEEEccCCccc------c---------------------------cCCCCCC-
Q 008628 7 HTLYFLDLSRNFLT-SIDHLPW--KNLEYLTLDSNLLQ------G---------------------------SLPDLPP- 49 (559)
Q Consensus 7 ~~L~~L~ls~n~~~-~i~~~~~--~~L~~L~Ls~n~~~------~---------------------------~~~~~~~- 49 (559)
.+++.|+|++++++ .+|..+. ++|++|||++|.+. + .++..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 47899999999998 8887766 99999999998651 1 0000000
Q ss_pred ---------------------CccEEEe--eeccCCcccCccCCCCCCCCEEEcccCcCccc-----------------c
Q 008628 50 ---------------------HMVELLI--SNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQ-----------------I 89 (559)
Q Consensus 50 ---------------------~L~~L~L--~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~-----------------~ 89 (559)
.++.+.+ .+|.+++ +|..++++++|++|++++|.+.+. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 0111111 1345555 566666666666666666666653 5
Q ss_pred Ccccc---CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCc-CCC-CCCccCCCC------CCccEEEeeCCcCCc
Q 008628 90 PQCLG---NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNH-LEG-PLPPSLINC------VKLHFLDVGNNNLSG 158 (559)
Q Consensus 90 ~~~~~---~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~-~~~-~~~~~l~~l------~~L~~L~l~~n~l~~ 158 (559)
|..+. +++|++|++++|.+.+.+|..++++++|++|++++|. +++ .+|..++.+ ++|++|++++|.++
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~- 318 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK- 318 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence 55443 6666666666666666666666666666666666666 555 555555554 66666666666666
Q ss_pred ccch--hccCCCCCCEEEccCCccccccCccccc-CccCEEEccCCcCCCCcchhhcCCCC-ccEEEccCCccccCCCcc
Q 008628 159 PIPE--YLGNSTSLSFLNVRNNSLSGPIPECLGN-STLEILDMRMNKFSGSLPQTFAKSCV-LVSLNLNGNRLEGPLPPS 234 (559)
Q Consensus 159 ~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~-L~~L~L~~n~~~~~~~~~ 234 (559)
.+|. .+..+++|++|++++|.+.|.+| .+.. .+|+.|++++|.+. .+|..+..+++ |++|++++|.++ .+|..
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~ 395 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNI 395 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSC
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchh
Confidence 5555 66666666666666666665566 3333 23666666666666 55666666666 666666666666 45555
Q ss_pred ccCCC--CCcEEEeecCccCcccchhhc-------CCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeec
Q 008628 235 LVNCR--HLEVIDVGNNQINETFPHWLD-------VLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVL 305 (559)
Q Consensus 235 l~~l~--~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 305 (559)
+..+. +|++|++++|.+++..|..+. .+++|++|++++|++.+ ++... +..+++|++|++++|.++ .+
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~-~~~l~~L~~L~Ls~N~l~-~i 472 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKEL-FSTGSPLSSINLMGNMLT-EI 472 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHH-HHTTCCCSEEECCSSCCS-BC
T ss_pred hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc-CCHHH-HccCCCCCEEECCCCCCC-Cc
Confidence 55443 666666666666666665555 55566666666666652 22211 133566666666666666 33
Q ss_pred ChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhh--cCCCCC
Q 008628 306 PIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLG--KLNSLK 383 (559)
Q Consensus 306 ~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~--~l~~L~ 383 (559)
|...+...... ...+++|++|++++|.++ .+|..+. .+++|+
T Consensus 473 ~~~~~~~~~~~-----------------------------------~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~ 516 (636)
T 4eco_A 473 PKNSLKDENEN-----------------------------------FKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLV 516 (636)
T ss_dssp CSSSSEETTEE-----------------------------------CTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCC
T ss_pred CHHHhcccccc-----------------------------------ccccCCccEEECcCCcCC-ccChhhhhccCCCcC
Confidence 32211110000 000235556666666655 3444443 556666
Q ss_pred EEEccCCcCCCCCCccccCCCCCCEEeC------CCCcCCccCcccccCCCCCCeEeCcCCccccCCCCCCCCCccCCcc
Q 008628 384 SLNISHNNLTGGIPSSLRNLTELESLDL------SSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPEGPQFNTFANDS 457 (559)
Q Consensus 384 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L------s~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~ 457 (559)
+|+|++|++++ +|..+..+++|++|++ ++|.+.+.+|..+.++++|++|++++|++ +.+|... ...+..+.
T Consensus 517 ~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~-~~~L~~L~ 593 (636)
T 4eco_A 517 GIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI-TPNISVLD 593 (636)
T ss_dssp EEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CTTCCEEE
T ss_pred EEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH-hCcCCEEE
Confidence 66666666654 5555555666666665 33455555555555666666666666665 4455432 24555555
Q ss_pred ccCCCCCC
Q 008628 458 YSGNSGLC 465 (559)
Q Consensus 458 ~~~n~~lc 465 (559)
+.+|+..|
T Consensus 594 Ls~N~l~~ 601 (636)
T 4eco_A 594 IKDNPNIS 601 (636)
T ss_dssp CCSCTTCE
T ss_pred CcCCCCcc
Confidence 55555444
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.2e-44 Score=382.30 Aligned_cols=415 Identities=20% Similarity=0.226 Sum_probs=298.8
Q ss_pred CccCEEECCCCCCCCCCcccc---cCCcEEEccCCcccccCCCCCC---CccEEEeeeccCCcccCccCCCCCCCCEEEc
Q 008628 7 HTLYFLDLSRNFLTSIDHLPW---KNLEYLTLDSNLLQGSLPDLPP---HMVELLISNNSLTGEIPSSFCNLSSIQYLNL 80 (559)
Q Consensus 7 ~~L~~L~ls~n~~~~i~~~~~---~~L~~L~Ls~n~~~~~~~~~~~---~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 80 (559)
+++++||+++|.++.++...+ ++|++||+++|.+.+..+..+. +|++|++++|.+++..+..|+++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 457888888888876654333 7888888888887776655443 7888888888887777777888888888888
Q ss_pred ccCcCccccCcccc-CcccCeEeccCCcCCC-ccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCc----cEEEeeCC
Q 008628 81 SNNSLSGQIPQCLG-NSTLETLDLRMNNFQG-TIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKL----HFLDVGNN 154 (559)
Q Consensus 81 ~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L----~~L~l~~n 154 (559)
++|.+.+..+..+. +++|++|++++|.+.+ ..|..++++++|++|++++|.+.+..+..++.+++| ++|++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 88877754443455 7888888888888776 357778888888888888887776555556655555 56666666
Q ss_pred cCCcccch------------------------------------------------------------------------
Q 008628 155 NLSGPIPE------------------------------------------------------------------------ 162 (559)
Q Consensus 155 ~l~~~~~~------------------------------------------------------------------------ 162 (559)
.+.+..|.
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence 55544333
Q ss_pred ---------hccCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCc
Q 008628 163 ---------YLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPP 233 (559)
Q Consensus 163 ---------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~ 233 (559)
.+..+++|+.|++++|.+.+ +|..+....|+.|++++|.+. .+|. ..+++|+.|++++|.+.+..+.
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~ 343 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE 343 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC
T ss_pred hhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccCCccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc
Confidence 33444555566665555552 343333335666666666555 3333 3455666666666665544433
Q ss_pred cccCCCCCcEEEeecCccCccc--chhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecChHhhh
Q 008628 234 SLVNCRHLEVIDVGNNQINETF--PHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLN 311 (559)
Q Consensus 234 ~l~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 311 (559)
..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..+...+.
T Consensus 344 --~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~ 418 (570)
T 2z63_A 344 --VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN---FLGLEQLEHLDFQHSNLKQMSEFSVFL 418 (570)
T ss_dssp --CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE---EETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred --ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc---ccccCCCCEEEccCCccccccchhhhh
Confidence 56677888888888776543 56677788888888888877654433 256778888888888887766655566
Q ss_pred cccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccc-cccchhhhcCCCCCEEEccCC
Q 008628 312 GFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQ-GEISQVLGKLNSLKSLNISHN 390 (559)
Q Consensus 312 ~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n 390 (559)
.+++|+.++...+....... .....+++|++|++++|.++ +.+|..+..+++|++|+|++|
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~------------------~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFN------------------GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp TCTTCCEEECTTSCCEECCT------------------TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred cCCCCCEEeCcCCcccccch------------------hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence 67777777766654332211 01122789999999999998 578889999999999999999
Q ss_pred cCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEeCcCCccccCCCCCC
Q 008628 391 NLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPEGP 448 (559)
Q Consensus 391 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~ 448 (559)
++++..|..|..+++|++|++++|.+++..|..+.++++|+.|++++|+++|.+|...
T Consensus 481 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 9999999999999999999999999999988899999999999999999999998754
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.5e-43 Score=376.88 Aligned_cols=334 Identities=20% Similarity=0.243 Sum_probs=216.2
Q ss_pred CCcCCCccchhhcCCCCCCEEEcccCcCCCC-----------------CCccCC--CCCCccEEEeeCCcCCcccchhcc
Q 008628 105 MNNFQGTIPQTYAKGCNLSYLRLSGNHLEGP-----------------LPPSLI--NCVKLHFLDVGNNNLSGPIPEYLG 165 (559)
Q Consensus 105 ~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-----------------~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~ 165 (559)
+|.+++ +|..++++++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.+|..+.
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 345554 556666666666666666666643 566666 666666666666666666666666
Q ss_pred CCCCCCEEEccCCc-ccc-ccCccccc-------CccCEEEccCCcCCCCcch--hhcCCCCccEEEccCCccccCCCcc
Q 008628 166 NSTSLSFLNVRNNS-LSG-PIPECLGN-------STLEILDMRMNKFSGSLPQ--TFAKSCVLVSLNLNGNRLEGPLPPS 234 (559)
Q Consensus 166 ~l~~L~~L~l~~n~-l~~-~~~~~~~~-------~~L~~L~l~~n~~~~~~~~--~~~~~~~L~~L~L~~n~~~~~~~~~ 234 (559)
++++|++|++++|. +++ .+|..++. .+|+.|++++|.++ .+|. .+..+++|++|++++|.++|.+| .
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 66666666666665 555 45554443 34666666666666 5555 56666666666666666665555 5
Q ss_pred ccCCCCCcEEEeecCccCcccchhhcCCCC-CcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecChHhhh--
Q 008628 235 LVNCRHLEVIDVGNNQINETFPHWLDVLPE-LQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLN-- 311 (559)
Q Consensus 235 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-- 311 (559)
+..+++|++|++++|.++ .+|..+..+++ |++|++++|++. .+|.......+++|+.|++++|.+++..|..+..
T Consensus 349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~ 426 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426 (636)
T ss_dssp CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence 666666666666666665 44555666666 666666666665 4444433233445666666666665554433210
Q ss_pred ----cccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhhcC-------C
Q 008628 312 ----GFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKL-------N 380 (559)
Q Consensus 312 ----~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l-------~ 380 (559)
.+..++.++...+.+..++. .....+++|++|++++|.++...+..+... +
T Consensus 427 ~~~~~~~~L~~L~Ls~N~l~~lp~------------------~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~ 488 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQISKFPK------------------ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTY 488 (636)
T ss_dssp SSCCCCCCEEEEECCSSCCCSCCT------------------HHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGG
T ss_pred cccccCCCCCEEECcCCccCcCCH------------------HHHccCCCCCEEECCCCCCCCcCHHHhccccccccccC
Confidence 23344444444444332221 112227899999999999994444444433 3
Q ss_pred CCCEEEccCCcCCCCCCcccc--CCCCCCEEeCCCCcCCccCcccccCCCCCCeEeC------cCCccccCCCCC-CCCC
Q 008628 381 SLKSLNISHNNLTGGIPSSLR--NLTELESLDLSSNKLAGRIPTQLASLNYLSVLNL------SNNQLEGPIPEG-PQFN 451 (559)
Q Consensus 381 ~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l------~~n~l~~~~p~~-~~~~ 451 (559)
+|++|+|++|+++ .+|..+. .+++|++|++++|++.+ +|..+.++++|++|++ ++|++.+.+|.. ..+.
T Consensus 489 ~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~ 566 (636)
T 4eco_A 489 LLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566 (636)
T ss_dssp GCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred CccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC
Confidence 9999999999999 6777776 99999999999999997 8889999999999999 568888888865 4567
Q ss_pred ccCCccccCCCC
Q 008628 452 TFANDSYSGNSG 463 (559)
Q Consensus 452 ~~~~~~~~~n~~ 463 (559)
.+..+.+.+|.-
T Consensus 567 ~L~~L~Ls~N~l 578 (636)
T 4eco_A 567 SLTQLQIGSNDI 578 (636)
T ss_dssp SCCEEECCSSCC
T ss_pred CCCEEECCCCcC
Confidence 778888888855
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.2e-43 Score=379.61 Aligned_cols=406 Identities=18% Similarity=0.192 Sum_probs=198.5
Q ss_pred CccCEEECCCCCCC-CCCcccc--cCCcEEEc-cCCcccccCCCCC----------------------------------
Q 008628 7 HTLYFLDLSRNFLT-SIDHLPW--KNLEYLTL-DSNLLQGSLPDLP---------------------------------- 48 (559)
Q Consensus 7 ~~L~~L~ls~n~~~-~i~~~~~--~~L~~L~L-s~n~~~~~~~~~~---------------------------------- 48 (559)
..++.|+|+++++. .+|..+. ++|++||| ++|.+.|..+-..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46899999999998 8887776 99999999 7887655411000
Q ss_pred --------------------CCccEEEee--eccCCcccCccCCCCCCCCEEEcccCcCcc-----------------cc
Q 008628 49 --------------------PHMVELLIS--NNSLTGEIPSSFCNLSSIQYLNLSNNSLSG-----------------QI 89 (559)
Q Consensus 49 --------------------~~L~~L~L~--~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~-----------------~~ 89 (559)
..++.+.+. +|.+++ +|..|+++++|++|+|++|.+.+ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 011111111 234443 45555555555555555555554 14
Q ss_pred Ccccc---CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCc-CCC-CCCccCCC-------CCCccEEEeeCCcCC
Q 008628 90 PQCLG---NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNH-LEG-PLPPSLIN-------CVKLHFLDVGNNNLS 157 (559)
Q Consensus 90 ~~~~~---~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~-~~~-~~~~~l~~-------l~~L~~L~l~~n~l~ 157 (559)
|..++ +++|++|+|++|.+.+.+|..++++++|++|++++|+ +++ .+|..+++ +++|++|++++|.+.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 44432 5555555555555555555555555555555555554 443 34433322 235555555555555
Q ss_pred cccch--hccCCCCCCEEEccCCccccccCcccccC-ccCEEEccCCcCCCCcchhhcCCCC-ccEEEccCCccccCCCc
Q 008628 158 GPIPE--YLGNSTSLSFLNVRNNSLSGPIPECLGNS-TLEILDMRMNKFSGSLPQTFAKSCV-LVSLNLNGNRLEGPLPP 233 (559)
Q Consensus 158 ~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~-L~~L~L~~n~~~~~~~~ 233 (559)
.+|. .+.++++|+.|++++|.+. .+| .++.. +|+.|++++|.+. .+|..+..+++ |+.|++++|.++ .+|.
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence 4444 5555555555555555555 444 22222 2555555555555 45555555555 555555555555 4444
Q ss_pred cccCCCC--CcEEEeecCccCcccchhh---c--CCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecC
Q 008628 234 SLVNCRH--LEVIDVGNNQINETFPHWL---D--VLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLP 306 (559)
Q Consensus 234 ~l~~l~~--L~~L~l~~n~l~~~~~~~~---~--~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 306 (559)
.+..++. |+.|++++|.+.+.+|... . ..++|++|++++|.+.. +|... +..+++|+.|++++|+++ .+|
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~-~~~l~~L~~L~Ls~N~L~-~ip 713 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTEL-FATGSPISTIILSNNLMT-SIP 713 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS-CCHHH-HHTTCCCSEEECCSCCCS-CCC
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCc-cCHHH-HccCCCCCEEECCCCcCC-ccC
Confidence 4444332 5555555555554433211 1 22355555555555542 22111 123455555555555555 223
Q ss_pred hHhhhcc-------cccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhhcC
Q 008628 307 IWYLNGF-------KAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKL 379 (559)
Q Consensus 307 ~~~~~~l-------~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l 379 (559)
...+... +.|+.++...+.+..++.... ...+++|+.|++++|.+++ +|..+..+
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~-----------------~~~l~~L~~L~Ls~N~L~~-lp~~l~~L 775 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR-----------------ATTLPYLSNMDVSYNCFSS-FPTQPLNS 775 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGS-----------------TTTCTTCCEEECCSSCCSS-CCCGGGGC
T ss_pred hHHhccccccccccCCccEEECCCCCCccchHHhh-----------------hccCCCcCEEEeCCCCCCc-cchhhhcC
Confidence 2211110 011111111111000000000 0004455555555555554 44455555
Q ss_pred CCCCEEEccC------CcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEeCcCCcccc
Q 008628 380 NSLKSLNISH------NNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEG 442 (559)
Q Consensus 380 ~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 442 (559)
++|+.|+|++ |++.+.+|..+..+++|++|+|++|.+ +.+|..+. ++|+.|++++|++..
T Consensus 776 ~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp TTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred CCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence 5555555544 445555555555555555555555555 34444433 355555555555543
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4e-43 Score=369.29 Aligned_cols=428 Identities=21% Similarity=0.244 Sum_probs=295.0
Q ss_pred CEEECCCCCCCCCCcccccCCcEEEccCCcccccCCC---CCCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCc
Q 008628 10 YFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPD---LPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS 86 (559)
Q Consensus 10 ~~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~~~~~---~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~ 86 (559)
++||+++|+++.+|..++++|++|++++|.+.+..|. .+.+|++|++++|.+++..|..|+++++|++|++++|.+.
T Consensus 3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred ceEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence 5899999999999998889999999999999876653 3459999999999999888999999999999999999998
Q ss_pred cccCccccCcccCeEeccCCcCCC-ccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCc--cEEEeeCCcC--Ccccc
Q 008628 87 GQIPQCLGNSTLETLDLRMNNFQG-TIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKL--HFLDVGNNNL--SGPIP 161 (559)
Q Consensus 87 ~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~ 161 (559)
.+|.. .+++|++|++++|.+++ ..|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|
T Consensus 83 -~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~ 157 (520)
T 2z7x_B 83 -KISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDP 157 (520)
T ss_dssp -EEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCT
T ss_pred -ecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccc
Confidence 56665 79999999999999987 478999999999999999999875 456777888 9999999998 66666
Q ss_pred hhccC--------------------------CCCCCEEEccCCc-------cccccCcccccCccCEEEccCCcCCCCcc
Q 008628 162 EYLGN--------------------------STSLSFLNVRNNS-------LSGPIPECLGNSTLEILDMRMNKFSGSLP 208 (559)
Q Consensus 162 ~~~~~--------------------------l~~L~~L~l~~n~-------l~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 208 (559)
..+.. +++|+.+++++|. +.+.++.......|+.|++++|.+.+..+
T Consensus 158 ~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~ 237 (520)
T 2z7x_B 158 EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237 (520)
T ss_dssp TTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHH
T ss_pred ccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHH
Confidence 66655 3444555555544 33333322223335555555555443221
Q ss_pred hhhc---CCCCccEEEccCCccccCCCccc-----cCCCCCcEEEeecCccCcccchhhcCC---CCCcEEEcccccccc
Q 008628 209 QTFA---KSCVLVSLNLNGNRLEGPLPPSL-----VNCRHLEVIDVGNNQINETFPHWLDVL---PELQVLTLRSNRFRG 277 (559)
Q Consensus 209 ~~~~---~~~~L~~L~L~~n~~~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~ 277 (559)
..+. ..++|++|++++|.+++.+|..+ ..+++|+.+++++|.+ ......+..+ .+|++|++++|.+..
T Consensus 238 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~ 316 (520)
T 2z7x_B 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVH 316 (520)
T ss_dssp HHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred HHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccc
Confidence 1111 13467777777777777777766 6777777777777766 2221333332 456666666666542
Q ss_pred cCCCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhcc
Q 008628 278 PIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTT 357 (559)
Q Consensus 278 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 357 (559)
.. ....+++|++|++++|.+++..|.. +..++.|+.++...+.+..++.. ......+++
T Consensus 317 ~~----~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~~----------------~~~~~~l~~ 375 (520)
T 2z7x_B 317 ML----CPSKISPFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKELSKI----------------AEMTTQMKS 375 (520)
T ss_dssp CC----CCSSCCCCCEEECCSSCCCTTTTTT-CCCCSSCCEEECCSSCCCBHHHH----------------HHHHTTCTT
T ss_pred cc----chhhCCcccEEEeECCccChhhhhh-hccCCCCCEEEccCCccCccccc----------------hHHHhhCCC
Confidence 21 1134566777777777766655533 34555566555555543322110 011122677
Q ss_pred ccEEEcCCcccccccch-hhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEeCc
Q 008628 358 FATIDLSSNRFQGEISQ-VLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLS 436 (559)
Q Consensus 358 L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~ 436 (559)
|++|++++|.+.+.+|. .+..+++|++|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|++|+++
T Consensus 376 L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~ 452 (520)
T 2z7x_B 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVA 452 (520)
T ss_dssp CCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECC
T ss_pred CCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECC
Confidence 88888888888774444 367777888888888887776666553 67888888888877 566666678888888888
Q ss_pred CCccccCCCCC--CCCCccCCccccCCCCCCCCC
Q 008628 437 NNQLEGPIPEG--PQFNTFANDSYSGNSGLCGFP 468 (559)
Q Consensus 437 ~n~l~~~~p~~--~~~~~~~~~~~~~n~~lc~~~ 468 (559)
+|+++. +|.. ..+..+..+.+.+|+..|+++
T Consensus 453 ~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 453 SNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp SSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence 888774 4442 345566667777777777644
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.7e-42 Score=367.06 Aligned_cols=434 Identities=19% Similarity=0.172 Sum_probs=265.3
Q ss_pred CCccCEEECCCCCCCCCCcccccCCcEEEccCCcccccCCCCCC---CccEEEeeeccCCcccCccCCCCCCCCEEEccc
Q 008628 6 VHTLYFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLPP---HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSN 82 (559)
Q Consensus 6 l~~L~~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~~~~~~~~---~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 82 (559)
|+.....|+++++++++|...+++|++|++++|.+++..|..+. +|++|++++|.+++..|.+|+++++|++|++++
T Consensus 4 C~~~~~c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 83 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83 (549)
T ss_dssp ECTTSEEECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCCCceEECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC
Confidence 34444567777777777776667777777777777766554433 677777777777766666777777777777777
Q ss_pred CcCccccCcccc-CcccCeEeccCCcCCCc-cchhhcCCCCCCEEEcccCcCCCCCC-ccCCCCCCccEEEeeCCcCCcc
Q 008628 83 NSLSGQIPQCLG-NSTLETLDLRMNNFQGT-IPQTYAKGCNLSYLRLSGNHLEGPLP-PSLINCVKLHFLDVGNNNLSGP 159 (559)
Q Consensus 83 n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~ 159 (559)
|.+.+..+..+. +++|++|++++|.+++. .|..++++++|++|++++|.+.+.+| ..+.++++|++|++++|.+.+.
T Consensus 84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence 777655555455 77777777777777652 45566777777777777776333333 4677777777777777777766
Q ss_pred cchhccCCCCCCEEEccCCccccccCccc-c-cCccCEEEccCCcCCCC---------------------------cc--
Q 008628 160 IPEYLGNSTSLSFLNVRNNSLSGPIPECL-G-NSTLEILDMRMNKFSGS---------------------------LP-- 208 (559)
Q Consensus 160 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~-~~~L~~L~l~~n~~~~~---------------------------~~-- 208 (559)
.|..+..+++|++|+++.|.+.. ++..+ . ..+|+.|++++|.+.+. .+
T Consensus 164 ~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 242 (549)
T 2z81_A 164 QSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242 (549)
T ss_dssp CTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHH
T ss_pred ChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHH
Confidence 66666666666666665555442 22221 1 22355555555555432 11
Q ss_pred --hhhcCCCCccEEEccCCccccCC-----------------------------------CccccCCCCCcEEEeecCcc
Q 008628 209 --QTFAKSCVLVSLNLNGNRLEGPL-----------------------------------PPSLVNCRHLEVIDVGNNQI 251 (559)
Q Consensus 209 --~~~~~~~~L~~L~L~~n~~~~~~-----------------------------------~~~l~~l~~L~~L~l~~n~l 251 (559)
..+..+++|+.+++++|.+.+.. +..+....+|++|++++|.+
T Consensus 243 l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l 322 (549)
T 2z81_A 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322 (549)
T ss_dssp HHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC
T ss_pred HHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc
Confidence 12233445555555555543311 00011234677788888877
Q ss_pred CcccchhhcCCCCCcEEEcccccccccCCC-CCCCCCCCCceEEEccCccceeecC-hHhhhcccccccccCCCCccccc
Q 008628 252 NETFPHWLDVLPELQVLTLRSNRFRGPIGD-TKTRVPFPKLRIIDLSYNRFTGVLP-IWYLNGFKAMMHGDDNSTEVNYM 329 (559)
Q Consensus 252 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~l~~~~~~~~~~~~l 329 (559)
.......++.+++|++|++++|++.+..+. ......+++|++|++++|++++..+ ...+..++.|+.++...+.+..+
T Consensus 323 ~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l 402 (549)
T 2z81_A 323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM 402 (549)
T ss_dssp CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC
T ss_pred ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC
Confidence 644333346788999999999988765432 1122567889999999998876543 24466788888888877766544
Q ss_pred ccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEE
Q 008628 330 RSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESL 409 (559)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 409 (559)
+.... .+++|++|++++|.+++. |..+ .++|++|+|++|++++.+ ..+++|++|
T Consensus 403 p~~~~-------------------~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L 456 (549)
T 2z81_A 403 PDSCQ-------------------WPEKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQEL 456 (549)
T ss_dssp CSCCC-------------------CCTTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEE
T ss_pred Chhhc-------------------ccccccEEECCCCCcccc-cchh--cCCceEEECCCCChhhhc----ccCChhcEE
Confidence 32110 145666666666666532 2221 246666666666666432 356667777
Q ss_pred eCCCCcCCccCcccccCCCCCCeEeCcCCccccCCCCC-CCCCccCCccccCCCCCCCCC
Q 008628 410 DLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPEG-PQFNTFANDSYSGNSGLCGFP 468 (559)
Q Consensus 410 ~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~ 468 (559)
++++|+++ .+|. ...+++|++|++++|++++..|.. ..+..+..+.+.+|+..|++|
T Consensus 457 ~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 457 YISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp ECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 77777666 4443 345666777777777766655542 344555666666666666544
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.1e-42 Score=362.88 Aligned_cols=410 Identities=22% Similarity=0.241 Sum_probs=313.4
Q ss_pred CccCEEECCCCCCCCCCcc-cc--cCCcEEEccCCcccccCCCCCC---CccEEEeeeccCCcccCccCCCCCCCCEEEc
Q 008628 7 HTLYFLDLSRNFLTSIDHL-PW--KNLEYLTLDSNLLQGSLPDLPP---HMVELLISNNSLTGEIPSSFCNLSSIQYLNL 80 (559)
Q Consensus 7 ~~L~~L~ls~n~~~~i~~~-~~--~~L~~L~Ls~n~~~~~~~~~~~---~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 80 (559)
++|++|++++|.++.++.. +. ++|++|++++|.+.+..|+.+. +|++|++++|.+++..+..|+++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 5899999999999966543 33 9999999999999988776554 8999999999999887777999999999999
Q ss_pred ccCcCcc-ccCcccc-CcccCeEeccCCcCCCcc-chhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCC
Q 008628 81 SNNSLSG-QIPQCLG-NSTLETLDLRMNNFQGTI-PQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLS 157 (559)
Q Consensus 81 ~~n~~~~-~~~~~~~-~~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 157 (559)
++|.+.+ ..|..+. +++|++|++++|.+.+.+ +..+..+++|++|++++|.+.+..|..++.+++|++|+++.|.+.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 9999985 3556666 999999999999854444 468999999999999999999888999999999999999888876
Q ss_pred cccchhccCCCCCCEEEccCCcccccc--Cccc-----------------------------c-cCccCEEEccCCcCCC
Q 008628 158 GPIPEYLGNSTSLSFLNVRNNSLSGPI--PECL-----------------------------G-NSTLEILDMRMNKFSG 205 (559)
Q Consensus 158 ~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~-----------------------------~-~~~L~~L~l~~n~~~~ 205 (559)
......+..+++|++|++++|.+.+.. +... . ...++.+++++|.+.+
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 433333456888888888888877531 1000 0 1124455555544332
Q ss_pred C-----------------------------------cchhhcCCCCccEEEccCCccccCCCccc-cCCCCCcEEEeecC
Q 008628 206 S-----------------------------------LPQTFAKSCVLVSLNLNGNRLEGPLPPSL-VNCRHLEVIDVGNN 249 (559)
Q Consensus 206 ~-----------------------------------~~~~~~~~~~L~~L~L~~n~~~~~~~~~l-~~l~~L~~L~l~~n 249 (559)
. .+..+...++|+.|++++|.+. .+|..+ ..+++|++|++++|
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSS
T ss_pred cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCC
Confidence 1 1111233457888888888877 455544 57888888999888
Q ss_pred ccCcccch---hhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccCCCCcc
Q 008628 250 QINETFPH---WLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEV 326 (559)
Q Consensus 250 ~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~ 326 (559)
.+++..+. .++.+++|++|++++|++.+..+....+..+++|++|++++|++++ +|.. +..++.|+.++...+.+
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~-~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDS-CQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSC-CCCCTTCCEEECTTSCC
T ss_pred ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChh-hcccccccEEECCCCCc
Confidence 88876543 3667888888898888886532111113567888888888888874 4432 34566777777777665
Q ss_pred cccccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCC
Q 008628 327 NYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTEL 406 (559)
Q Consensus 327 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 406 (559)
..++... .++|++|++++|++++.. ..+++|++|+|++|+++ .+|. ...+++|
T Consensus 423 ~~l~~~~---------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L 475 (549)
T 2z81_A 423 RVVKTCI---------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVL 475 (549)
T ss_dssp SCCCTTS---------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTC
T ss_pred ccccchh---------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccC
Confidence 4443211 468999999999999754 57899999999999999 5565 4679999
Q ss_pred CEEeCCCCcCCccCcccccCCCCCCeEeCcCCccccCCCC
Q 008628 407 ESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPE 446 (559)
Q Consensus 407 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~ 446 (559)
++|++++|++++.+|..+..+++|+.|++++|++.|.+|.
T Consensus 476 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 476 LVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp CEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred CEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 9999999999999999999999999999999999999984
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.2e-41 Score=350.04 Aligned_cols=378 Identities=20% Similarity=0.211 Sum_probs=258.1
Q ss_pred CEEECCCCCCCCCCcccccCCcEEEccCCcccccCCCCCC---CccEEEeeeccCCcc-cCccCCCCCCCCEEEcccCcC
Q 008628 10 YFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLPP---HMVELLISNNSLTGE-IPSSFCNLSSIQYLNLSNNSL 85 (559)
Q Consensus 10 ~~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~~~~~~~~---~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~~ 85 (559)
+.+++++++++.+|. ..++|++||+++|.+.+..|..+. +|++|++++|.+.+. .+..|.++++|++|++++|.+
T Consensus 13 ~~~~c~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 13 YNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp TEEECCSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred cccCcCCCCcccCCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence 457777777777777 557777777777777766554443 667777777766533 345566777777777777777
Q ss_pred ccccCcccc-CcccCeEeccCCcCCCccchh--hcCCCCCCEEEcccCcCCCCCCcc-CCCCCCccEEEeeCCcCCcccc
Q 008628 86 SGQIPQCLG-NSTLETLDLRMNNFQGTIPQT--YAKGCNLSYLRLSGNHLEGPLPPS-LINCVKLHFLDVGNNNLSGPIP 161 (559)
Q Consensus 86 ~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~--~~~l~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~ 161 (559)
.+..|..+. +++|++|++++|.+++..+.. ++.+++|++|++++|.+.+..|.. +.++++|++|++++|.+.+..+
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence 665566666 677777777777766544443 666677777777777766555554 5666777777777776666666
Q ss_pred hhccCC--CCCCEEEccCCccccccCccc---------ccCccCEEEccCCcCCCCcchhhcCC---CCccEEEccCCcc
Q 008628 162 EYLGNS--TSLSFLNVRNNSLSGPIPECL---------GNSTLEILDMRMNKFSGSLPQTFAKS---CVLVSLNLNGNRL 227 (559)
Q Consensus 162 ~~~~~l--~~L~~L~l~~n~l~~~~~~~~---------~~~~L~~L~l~~n~~~~~~~~~~~~~---~~L~~L~L~~n~~ 227 (559)
..+..+ .+|+.|++++|.+.+..+..+ ...+|+.|++++|.+.+..+..+... ++|+.|++++|..
T Consensus 172 ~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 251 (455)
T 3v47_A 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251 (455)
T ss_dssp TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccc
Confidence 555544 556666666666654333221 11235566666665555444444332 4555555555543
Q ss_pred ccCCCccccCCCCCcEEEeecCccCcccchhhc--CCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeec
Q 008628 228 EGPLPPSLVNCRHLEVIDVGNNQINETFPHWLD--VLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVL 305 (559)
Q Consensus 228 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 305 (559)
.+.... .+.+.+..+..+. ..++|++|++++|.+.+..+..+ ..+++|++|++++|.+++..
T Consensus 252 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~ 315 (455)
T 3v47_A 252 MGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF--SHFTDLEQLTLAQNEINKID 315 (455)
T ss_dssp TSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT--TTCTTCCEEECTTSCCCEEC
T ss_pred cccccc--------------hhhhccCcccccccccccCceEEEecCccccccchhhc--ccCCCCCEEECCCCcccccC
Confidence 321100 0011111111222 23577888888887776666554 56778888888888887665
Q ss_pred ChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhhcCCCCCEE
Q 008628 306 PIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSL 385 (559)
Q Consensus 306 ~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L 385 (559)
+..+.. +++|++|++++|.+++..+..+..+++|++|
T Consensus 316 ~~~~~~-------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 352 (455)
T 3v47_A 316 DNAFWG-------------------------------------------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVL 352 (455)
T ss_dssp TTTTTT-------------------------------------------CTTCCEEECCSSCCCEECGGGGTTCTTCCEE
T ss_pred hhHhcC-------------------------------------------cccCCEEECCCCccCCcChhHhcCcccCCEE
Confidence 533211 6788999999999998888899999999999
Q ss_pred EccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEeCcCCccccCCCCC
Q 008628 386 NISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPEG 447 (559)
Q Consensus 386 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~ 447 (559)
+|++|++++..|..|..+++|++|++++|++++..+..+..+++|++|++++|+++|.+|..
T Consensus 353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred ECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 99999999999999999999999999999999888788899999999999999999999864
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.7e-41 Score=369.57 Aligned_cols=415 Identities=16% Similarity=0.201 Sum_probs=332.7
Q ss_pred cCCcEEEccCCcccccCCCCCC---CccEEEe-eeccCCcccCccC----------------------------------
Q 008628 28 KNLEYLTLDSNLLQGSLPDLPP---HMVELLI-SNNSLTGEIPSSF---------------------------------- 69 (559)
Q Consensus 28 ~~L~~L~Ls~n~~~~~~~~~~~---~L~~L~L-~~n~i~~~~~~~~---------------------------------- 69 (559)
.+++.|+|+++.+.|.+|+.+. +|+.|+| ++|.+.+..+..-
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 4688888888888887776554 7788888 7776654422110
Q ss_pred -----------------CCCCCCCEEEccc--CcCccccCcccc-CcccCeEeccCCcCCC-----------------cc
Q 008628 70 -----------------CNLSSIQYLNLSN--NSLSGQIPQCLG-NSTLETLDLRMNNFQG-----------------TI 112 (559)
Q Consensus 70 -----------------~~l~~L~~L~L~~--n~~~~~~~~~~~-~~~L~~L~L~~n~~~~-----------------~~ 112 (559)
.+...++.+.+.. |.+.+ +|..+. +++|++|+|++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 1112233333333 66665 888887 9999999999999998 38
Q ss_pred chhhc--CCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCc-CCc-ccchhccCCC-------CCCEEEccCCccc
Q 008628 113 PQTYA--KGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNN-LSG-PIPEYLGNST-------SLSFLNVRNNSLS 181 (559)
Q Consensus 113 ~~~~~--~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~l~-------~L~~L~l~~n~l~ 181 (559)
|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|. +++ .+|..+..++ +|+.|++++|.+.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 88877 99999999999999999999999999999999999998 887 7887666555 9999999999999
Q ss_pred cccCc--ccccC-ccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCC-CcEEEeecCccCcccch
Q 008628 182 GPIPE--CLGNS-TLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRH-LEVIDVGNNQINETFPH 257 (559)
Q Consensus 182 ~~~~~--~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~ 257 (559)
.+|. .++.. +|+.|++++|.+. .+| .+..+++|+.|++++|.++ .+|..+..+++ |++|++++|.++ .+|.
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence 6777 56554 4999999999998 778 8999999999999999999 78888999998 999999999998 6677
Q ss_pred hhcCCC--CCcEEEcccccccccCCCCC---CCCCCCCceEEEccCccceeecChHhhhcccccccccCCCCcccccccc
Q 008628 258 WLDVLP--ELQVLTLRSNRFRGPIGDTK---TRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSL 332 (559)
Q Consensus 258 ~~~~l~--~L~~L~L~~n~l~~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~ 332 (559)
.+...+ +|+.|++++|++.+.++... ....+++|+.|++++|.++ .+|..++..++.|+.++...+.+..++..
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~ 715 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPEN 715 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChH
Confidence 777665 49999999999988765432 1224568999999999999 67877777889999999888776655432
Q ss_pred cccceeeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhh--cCCCCCEEEccCCcCCCCCCccccCCCCCCEEe
Q 008628 333 NYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLG--KLNSLKSLNISHNNLTGGIPSSLRNLTELESLD 410 (559)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 410 (559)
...... .....+++|++|++++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+
T Consensus 716 ~~~~~~-----------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~ 782 (876)
T 4ecn_A 716 SLKPKD-----------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFG 782 (876)
T ss_dssp SSSCTT-----------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEE
T ss_pred Hhcccc-----------ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEE
Confidence 211000 00011458999999999999 6777776 99999999999999997 788899999999999
Q ss_pred CCC------CcCCccCcccccCCCCCCeEeCcCCccccCCCCCCCCCccCCccccCCCCC
Q 008628 411 LSS------NKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPEGPQFNTFANDSYSGNSGL 464 (559)
Q Consensus 411 Ls~------n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~l 464 (559)
|++ |.+.+.+|..+.++++|+.|++++|++ +.+|.. ....+..+.+.+|+..
T Consensus 783 Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNI 840 (876)
T ss_dssp CCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTC
T ss_pred CCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCC
Confidence 977 888899999999999999999999999 788876 3367777888888654
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.1e-40 Score=357.56 Aligned_cols=438 Identities=18% Similarity=0.134 Sum_probs=295.5
Q ss_pred CEEECCCCCCCCCCcccccCCcEEEccCCcccccCCCCCC---CccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCc
Q 008628 10 YFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLPP---HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS 86 (559)
Q Consensus 10 ~~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~~~~~~~~---~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~ 86 (559)
++.+.++.++++||..+.+++++|||++|.+++..+..+. +|++|+|++|.|++..+.+|+++++|++|+|++|+++
T Consensus 34 ~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp TEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred CEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 4678999899999999999999999999999987776654 8999999999999888889999999999999999998
Q ss_pred cccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCC-CCCccCCCCCCccEEEeeCCcCCcccchhc
Q 008628 87 GQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEG-PLPPSLINCVKLHFLDVGNNNLSGPIPEYL 164 (559)
Q Consensus 87 ~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 164 (559)
+..+..|. +++|++|++++|.+++..+..|+++++|++|++++|.+.+ ..|..++.+++|++|++++|.+++..+..+
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l 193 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc
Confidence 66666777 9999999999999998877889999999999999999875 367888999999999999999998877777
Q ss_pred cCCCCC----CEEEccCCccccccCcccccCccCEEEccCCcCCCC-c--------------------------------
Q 008628 165 GNSTSL----SFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGS-L-------------------------------- 207 (559)
Q Consensus 165 ~~l~~L----~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~-~-------------------------------- 207 (559)
..+.++ ..++++.|.+....+..+....++.+++.+|..... .
T Consensus 194 ~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~ 273 (635)
T 4g8a_A 194 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 273 (635)
T ss_dssp HHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTT
T ss_pred cchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccc
Confidence 655443 357777777765444443333344444433321100 0
Q ss_pred -----------------------------------------------chhhcCCCCccEEEccCCccccCCCcc------
Q 008628 208 -----------------------------------------------PQTFAKSCVLVSLNLNGNRLEGPLPPS------ 234 (559)
Q Consensus 208 -----------------------------------------------~~~~~~~~~L~~L~L~~n~~~~~~~~~------ 234 (559)
...+.....++.|++.+|.+.+..+..
T Consensus 274 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~ 353 (635)
T 4g8a_A 274 ALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR 353 (635)
T ss_dssp TTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCE
T ss_pred ccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhh
Confidence 001222234444444444433221111
Q ss_pred -------------ccCCCCCcEEEeecCccCc--ccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCc
Q 008628 235 -------------LVNCRHLEVIDVGNNQINE--TFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYN 299 (559)
Q Consensus 235 -------------l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 299 (559)
...+++|+.+++++|.+.. ..+..+..+.+|+++++..+........ +..+++|+.++++++
T Consensus 354 l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~---~~~l~~L~~l~l~~~ 430 (635)
T 4g8a_A 354 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN---FLGLEQLEHLDFQHS 430 (635)
T ss_dssp EEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC---CTTCTTCCEEECTTS
T ss_pred cccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccc---ccccccccchhhhhc
Confidence 1122333444444333321 1222233333444444444333222111 133455555555555
Q ss_pred cceeecChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccc-cccchhhhc
Q 008628 300 RFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQ-GEISQVLGK 378 (559)
Q Consensus 300 ~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~-~~~~~~~~~ 378 (559)
+.....+...+..+..+..++...+........ ....++.+++|++++|.+. +..|..+..
T Consensus 431 ~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~------------------~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~ 492 (635)
T 4g8a_A 431 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG------------------IFNGLSSLEVLKMAGNSFQENFLPDIFTE 492 (635)
T ss_dssp EEESTTSSCTTTTCTTCCEEECTTSCCEECCTT------------------TTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred ccccccccccccccccccccccccccccccccc------------------ccccchhhhhhhhhhcccccccCchhhhh
Confidence 554444444444444444444443332222111 1122678888888888743 456777888
Q ss_pred CCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEeCcCCccccCCCCCC-CC-CccCCc
Q 008628 379 LNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPEGP-QF-NTFAND 456 (559)
Q Consensus 379 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~-~~-~~~~~~ 456 (559)
+++|++|+|++|++++..|..|+++++|++|+|++|++++..|..|.++++|++|++++|++++..|... .+ ..+..+
T Consensus 493 l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L 572 (635)
T 4g8a_A 493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 572 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEE
T ss_pred ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEE
Confidence 8888888888888888888888888888888888888888888888888888888888888888777642 22 467777
Q ss_pred cccCCCCCCCCC
Q 008628 457 SYSGNSGLCGFP 468 (559)
Q Consensus 457 ~~~~n~~lc~~~ 468 (559)
.+.+||+.|+|.
T Consensus 573 ~L~~Np~~C~C~ 584 (635)
T 4g8a_A 573 NLTQNDFACTCE 584 (635)
T ss_dssp ECTTCCBCCSGG
T ss_pred EeeCCCCcccCC
Confidence 888888888765
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.3e-41 Score=356.09 Aligned_cols=409 Identities=17% Similarity=0.211 Sum_probs=274.1
Q ss_pred CCccCEEECCCCCCCCCCcccccCCcEEEccCCcccccCCCCCC---CccEEEeeeccCCcccCccCCCCCCCCEEEccc
Q 008628 6 VHTLYFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLPP---HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSN 82 (559)
Q Consensus 6 l~~L~~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~~~~~~~~---~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 82 (559)
+...+++|+++|+++.+|...+++|++|++++|.+.+..+..+. +|++|++++|.+++..|.+|+++++|++|++++
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cCCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 34458999999999999998889999999999999987664444 899999999999988899999999999999999
Q ss_pred CcCccccCccccCcccCeEeccCCcCCCc-cchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCc--cEEEeeCCcC--C
Q 008628 83 NSLSGQIPQCLGNSTLETLDLRMNNFQGT-IPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKL--HFLDVGNNNL--S 157 (559)
Q Consensus 83 n~~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L--~~L~l~~n~l--~ 157 (559)
|.+. .+|.. .+++|++|++++|.+++. .|..|+++++|++|++++|.+.+. .+..+++| ++|++++|.+ .
T Consensus 110 N~l~-~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 110 NRLQ-NISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp SCCC-EECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred CcCC-ccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccc
Confidence 9998 56666 799999999999999874 468999999999999999999864 45555555 9999999988 6
Q ss_pred cccchhccCC--------------------------CCCCEEEccCCc----------------------------ccc-
Q 008628 158 GPIPEYLGNS--------------------------TSLSFLNVRNNS----------------------------LSG- 182 (559)
Q Consensus 158 ~~~~~~~~~l--------------------------~~L~~L~l~~n~----------------------------l~~- 182 (559)
+..|..+..+ ++|+.+++++|. +.+
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 6666555543 345555555542 110
Q ss_pred ---ccCcccccCccCEEEccCCcCCCCcchhh-----cCCCCccEEEccCCccccCCC-ccccC---CCCCcEEEeecCc
Q 008628 183 ---PIPECLGNSTLEILDMRMNKFSGSLPQTF-----AKSCVLVSLNLNGNRLEGPLP-PSLVN---CRHLEVIDVGNNQ 250 (559)
Q Consensus 183 ---~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~L~~n~~~~~~~-~~l~~---l~~L~~L~l~~n~ 250 (559)
.++......+|+.|++++|.+.+.+|..+ ..++.|+.+++..+.+ .+| ..+.. ..+|++|++++|.
T Consensus 265 ~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~ 342 (562)
T 3a79_B 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTP 342 (562)
T ss_dssp HHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCC
Confidence 01111122368888888888887777665 4555555555554444 122 11111 1345555555554
Q ss_pred cCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecC-hHhhhcccccccccCCCCcccc-
Q 008628 251 INETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLP-IWYLNGFKAMMHGDDNSTEVNY- 328 (559)
Q Consensus 251 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~l~~~~~~~~~~~~- 328 (559)
+..... ...+++|++|++++|.+.+..+..+ ..+++|++|++++|++++..+ ...+..++.|+.++...+.+..
T Consensus 343 ~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 343 FIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGC--STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418 (562)
T ss_dssp CCCCCC--CSSCCCCCEEECCSSCCCTTTTTTC--CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred cccccC--ccCCCCceEEECCCCccccchhhhh--cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc
Confidence 432210 1344455555555555544333332 344555555555555543211 0112333344444433333222
Q ss_pred cccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCE
Q 008628 329 MRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELES 408 (559)
Q Consensus 329 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 408 (559)
++.... ..+++|++|++++|.+++..|..+. ++|++|+|++|+++ .+|..+..+++|++
T Consensus 419 ~~~~~~------------------~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~ 477 (562)
T 3a79_B 419 AYDRTC------------------AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQE 477 (562)
T ss_dssp CSSCCC------------------CCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSE
T ss_pred cChhhh------------------cCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCE
Confidence 111000 0167888899999988877665443 68999999999888 56666668889999
Q ss_pred EeCCCCcCCccCcccccCCCCCCeEeCcCCccccCCCC
Q 008628 409 LDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPE 446 (559)
Q Consensus 409 L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~ 446 (559)
|++++|+++...+..+..+++|+.|++++|++.|.||.
T Consensus 478 L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 478 LNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp EECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred EECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 99999998854444488889999999999999988874
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.5e-40 Score=341.05 Aligned_cols=356 Identities=19% Similarity=0.231 Sum_probs=288.3
Q ss_pred CccCEEECCCCCCCCCCc-ccc--cCCcEEEccCCcccccC-CCCC---CCccEEEeeeccCCcccCccCCCCCCCCEEE
Q 008628 7 HTLYFLDLSRNFLTSIDH-LPW--KNLEYLTLDSNLLQGSL-PDLP---PHMVELLISNNSLTGEIPSSFCNLSSIQYLN 79 (559)
Q Consensus 7 ~~L~~L~ls~n~~~~i~~-~~~--~~L~~L~Ls~n~~~~~~-~~~~---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 79 (559)
++|++|++++|.++.++. .+. ++|++|++++|.+.+.+ +..+ .+|++|++++|.+++..|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 679999999999996644 333 99999999999987654 3333 4999999999999988899999999999999
Q ss_pred cccCcCccccCcc--cc-CcccCeEeccCCcCCCccchh-hcCCCCCCEEEcccCcCCCCCCccCCCC--CCccEEEeeC
Q 008628 80 LSNNSLSGQIPQC--LG-NSTLETLDLRMNNFQGTIPQT-YAKGCNLSYLRLSGNHLEGPLPPSLINC--VKLHFLDVGN 153 (559)
Q Consensus 80 L~~n~~~~~~~~~--~~-~~~L~~L~L~~n~~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~l~~l--~~L~~L~l~~ 153 (559)
+++|.+.+..+.. +. +++|++|++++|.+++..|.. +..+++|++|++++|.+.+..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999998755544 66 999999999999999887776 8999999999999999998888888776 7899999999
Q ss_pred CcCCcccchh--------ccCCCCCCEEEccCCccccccCccccc----CccCEEEccCCcCCCCcchhhcCCCCccEEE
Q 008628 154 NNLSGPIPEY--------LGNSTSLSFLNVRNNSLSGPIPECLGN----STLEILDMRMNKFSGSLPQTFAKSCVLVSLN 221 (559)
Q Consensus 154 n~l~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~----~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 221 (559)
|.+.+..+.. +..+++|++|++++|.+.+..+..+.. ..++.|++++|...+...
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------------- 256 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF------------- 256 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT-------------
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc-------------
Confidence 9998655433 336689999999999998877665533 459999999997654211
Q ss_pred ccCCccccCCCccccC--CCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCc
Q 008628 222 LNGNRLEGPLPPSLVN--CRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYN 299 (559)
Q Consensus 222 L~~n~~~~~~~~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 299 (559)
..+.+.+..+..+.. .++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+ ..+++|++|++++|
T Consensus 257 -~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 257 -GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF--WGLTHLLKLNLSQN 333 (455)
T ss_dssp -TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSS
T ss_pred -chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHh--cCcccCCEEECCCC
Confidence 112222222222222 3578888888888888778888888888888888888877665554 56788888888888
Q ss_pred cceeecChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhhcC
Q 008628 300 RFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKL 379 (559)
Q Consensus 300 ~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l 379 (559)
.+++..+..+.. +++|++|++++|.+++..|..+..+
T Consensus 334 ~l~~~~~~~~~~-------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l 370 (455)
T 3v47_A 334 FLGSIDSRMFEN-------------------------------------------LDKLEVLDLSYNHIRALGDQSFLGL 370 (455)
T ss_dssp CCCEECGGGGTT-------------------------------------------CTTCCEEECCSSCCCEECTTTTTTC
T ss_pred ccCCcChhHhcC-------------------------------------------cccCCEEECCCCcccccChhhcccc
Confidence 887665533211 6789999999999999889999999
Q ss_pred CCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCc
Q 008628 380 NSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIP 421 (559)
Q Consensus 380 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 421 (559)
++|++|+|++|++++..+..|..+++|++|++++|++.+..|
T Consensus 371 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 371 PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999999998888888999999999999999998776
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-41 Score=357.99 Aligned_cols=405 Identities=18% Similarity=0.202 Sum_probs=316.8
Q ss_pred CccCEEECCCCCCCCCCcccc---cCCcEEEccCCcccccCCCCCC---CccEEEeeeccCCcccCccCCCCCCCCEEEc
Q 008628 7 HTLYFLDLSRNFLTSIDHLPW---KNLEYLTLDSNLLQGSLPDLPP---HMVELLISNNSLTGEIPSSFCNLSSIQYLNL 80 (559)
Q Consensus 7 ~~L~~L~ls~n~~~~i~~~~~---~~L~~L~Ls~n~~~~~~~~~~~---~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 80 (559)
++|++|++++|.++.++...+ ++|++|++++|.+++..|+.+. +|++|++++|.++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 689999999999998875433 9999999999999987665544 8999999999998 45554 7999999999
Q ss_pred ccCcCcc-ccCcccc-CcccCeEeccCCcCCCccchhhcCCCCC--CEEEcccCcC--CCCCCccCCC------------
Q 008628 81 SNNSLSG-QIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNL--SYLRLSGNHL--EGPLPPSLIN------------ 142 (559)
Q Consensus 81 ~~n~~~~-~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L--~~L~L~~n~~--~~~~~~~l~~------------ 142 (559)
++|.+.+ .+|..+. +++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 9999986 4677887 9999999999999886 356777777 9999999988 5555555544
Q ss_pred --------------CCCccEEEeeCCc-------CCcccchhccCCCCCCEEEccCCccccccCcc----cccCccCEEE
Q 008628 143 --------------CVKLHFLDVGNNN-------LSGPIPEYLGNSTSLSFLNVRNNSLSGPIPEC----LGNSTLEILD 197 (559)
Q Consensus 143 --------------l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~~L~~L~ 197 (559)
+++|+.|++++|. +.+.+| .+..+++|+.|++++|.+.+..+.. ....+|+.|+
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred Ccchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 7788888888886 555555 6888999999999988877532222 2234699999
Q ss_pred ccCCcCCCCcchhh-----cCCCCccEEEccCCccccCCC-ccccCC---CCCcEEEeecCccCcccchhhcCCCCCcEE
Q 008628 198 MRMNKFSGSLPQTF-----AKSCVLVSLNLNGNRLEGPLP-PSLVNC---RHLEVIDVGNNQINETFPHWLDVLPELQVL 268 (559)
Q Consensus 198 l~~n~~~~~~~~~~-----~~~~~L~~L~L~~n~~~~~~~-~~l~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 268 (559)
+++|.+.+.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... ....+++|++|
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L 329 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHL 329 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEE
T ss_pred eecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEE
Confidence 99999888888887 8888899999988887 344 344333 56888888888775532 12577888888
Q ss_pred EcccccccccCCCCCCCCCCCCceEEEccCccceee--cChHhhhcccccccccCCCCcccc-cccccccceeeeEEeec
Q 008628 269 TLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGV--LPIWYLNGFKAMMHGDDNSTEVNY-MRSLNYSYYESISLTMK 345 (559)
Q Consensus 269 ~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~l~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~ 345 (559)
++++|++.+..+..+ ..+++|++|++++|++++. .| ..+..++.|+.++...+.+.. ++....
T Consensus 330 ~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~l~~~~-~~~~~l~~L~~L~Ls~N~l~~~l~~~~~----------- 395 (520)
T 2z7x_B 330 DFSNNLLTDTVFENC--GHLTELETLILQMNQLKELSKIA-EMTTQMKSLQQLDISQNSVSYDEKKGDC----------- 395 (520)
T ss_dssp ECCSSCCCTTTTTTC--CCCSSCCEEECCSSCCCBHHHHH-HHHTTCTTCCEEECCSSCCBCCGGGCSC-----------
T ss_pred EeECCccChhhhhhh--ccCCCCCEEEccCCccCccccch-HHHhhCCCCCEEECCCCcCCcccccchh-----------
Confidence 888888887666554 6678888888888888763 22 235667778777777766544 332111
Q ss_pred CchhhHHHhhccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCccccc
Q 008628 346 GNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLA 425 (559)
Q Consensus 346 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 425 (559)
..+++|++|++++|.+++..|..+. ++|+.|+|++|+++ .+|..+..+++|++|++++|+++...+..+.
T Consensus 396 -------~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 465 (520)
T 2z7x_B 396 -------SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFD 465 (520)
T ss_dssp -------CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTT
T ss_pred -------ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhc
Confidence 1168999999999999988877554 79999999999999 7777777999999999999999964444599
Q ss_pred CCCCCCeEeCcCCccccCCCC
Q 008628 426 SLNYLSVLNLSNNQLEGPIPE 446 (559)
Q Consensus 426 ~l~~L~~L~l~~n~l~~~~p~ 446 (559)
.+++|++|++++|+++|.|+.
T Consensus 466 ~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 466 RLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp TCTTCCEEECCSSCBCCCHHH
T ss_pred cCCcccEEECcCCCCcccCCc
Confidence 999999999999999998864
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.9e-38 Score=340.80 Aligned_cols=416 Identities=20% Similarity=0.196 Sum_probs=309.0
Q ss_pred ccCEEECCCCCCCCCCcccc---cCCcEEEccCCcccccCCCCCC---CccEEEeeeccCCcccCccCCCCCCCCEEEcc
Q 008628 8 TLYFLDLSRNFLTSIDHLPW---KNLEYLTLDSNLLQGSLPDLPP---HMVELLISNNSLTGEIPSSFCNLSSIQYLNLS 81 (559)
Q Consensus 8 ~L~~L~ls~n~~~~i~~~~~---~~L~~L~Ls~n~~~~~~~~~~~---~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 81 (559)
++++|||++|.|+.++...+ ++|++|||++|.+++..++.+. +|++|+|++|++++..+..|+++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 79999999999999987655 9999999999999987776654 89999999999998777889999999999999
Q ss_pred cCcCccccCcccc-CcccCeEeccCCcCCCc-cchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCc----cEEEeeCCc
Q 008628 82 NNSLSGQIPQCLG-NSTLETLDLRMNNFQGT-IPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKL----HFLDVGNNN 155 (559)
Q Consensus 82 ~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L----~~L~l~~n~ 155 (559)
+|.+.+..+..+. +++|++|++++|.+++. .|..++.+++|++|++++|.+.+..+..+..+.++ ..++++.|.
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~ 212 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 212 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence 9999876666677 99999999999999764 67889999999999999999987666555433222 234444443
Q ss_pred CCcccch------------------------hccCCCC------------------------------------------
Q 008628 156 LSGPIPE------------------------YLGNSTS------------------------------------------ 169 (559)
Q Consensus 156 l~~~~~~------------------------~~~~l~~------------------------------------------ 169 (559)
+....+. .+..+..
T Consensus 213 l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 292 (635)
T 4g8a_A 213 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 292 (635)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC
T ss_pred ccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhc
Confidence 3321111 1111122
Q ss_pred ---------------CCEEEccCCccccccCcccccCccCEEEccCCcCCCCc-------------------chhhcCCC
Q 008628 170 ---------------LSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSL-------------------PQTFAKSC 215 (559)
Q Consensus 170 ---------------L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~-------------------~~~~~~~~ 215 (559)
++.+.+.++.+... +.......++.|++.+|.+.... +.....++
T Consensus 293 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~ 371 (635)
T 4g8a_A 293 YYLDGIIDLFNCLTNVSSFSLVSVTIERV-KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 371 (635)
T ss_dssp SCEEECTTTTGGGTTCSEEEEESCEEEEC-GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCT
T ss_pred ccccchhhhhhhhcccccccccccccccc-cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccc
Confidence 22222222221110 11111122555555555443211 12234578
Q ss_pred CccEEEccCCcccc--CCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceE
Q 008628 216 VLVSLNLNGNRLEG--PLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRI 293 (559)
Q Consensus 216 ~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~ 293 (559)
+|+.+++++|.+.. ..+..+..+.+|+.+++..+.+... +..+..+++|+.+++..+......+.. .+..+++++.
T Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~-~~~~l~~l~~ 449 (635)
T 4g8a_A 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFS-VFLSLRNLIY 449 (635)
T ss_dssp TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSC-TTTTCTTCCE
T ss_pred ccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhcccccccccc-cccccccccc
Confidence 89999999998753 3555667788999999998877553 445778899999999988876554332 3467889999
Q ss_pred EEccCccceeecChHhhhcccccccccCCCCcccc--cccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccccc
Q 008628 294 IDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNY--MRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGE 371 (559)
Q Consensus 294 L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~ 371 (559)
++++.|.+.+..+.. +..++.++.++...+.... .+.. ...+++|++|++++|++++.
T Consensus 450 l~ls~n~l~~~~~~~-~~~~~~L~~L~Ls~N~~~~~~~~~~-------------------~~~l~~L~~L~Ls~N~L~~l 509 (635)
T 4g8a_A 450 LDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDI-------------------FTELRNLTFLDLSQCQLEQL 509 (635)
T ss_dssp EECTTSCCEECCTTT-TTTCTTCCEEECTTCEEGGGEECSC-------------------CTTCTTCCEEECTTSCCCEE
T ss_pred ccccccccccccccc-cccchhhhhhhhhhcccccccCchh-------------------hhhccccCEEECCCCccCCc
Confidence 999999998776643 4566677766665543211 1110 11278999999999999999
Q ss_pred cchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCC-CCCCeEeCcCCccccCCCC
Q 008628 372 ISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASL-NYLSVLNLSNNQLEGPIPE 446 (559)
Q Consensus 372 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~l~~n~l~~~~p~ 446 (559)
.|..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..|..+..+ ++|++|++++|++.|.|.-
T Consensus 510 ~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 510 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred ChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 99999999999999999999999999999999999999999999999999999998 6899999999999999963
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.6e-38 Score=335.42 Aligned_cols=407 Identities=22% Similarity=0.240 Sum_probs=316.9
Q ss_pred cCCcEEEccCCcccccCCCCCCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCeEeccCC
Q 008628 28 KNLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMN 106 (559)
Q Consensus 28 ~~L~~L~Ls~n~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n 106 (559)
...+++|+++|.+++.....++++++|++++|.+++..+..|+++++|++|++++|.+.+..|..+. +++|++|++++|
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp --CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 5559999999999975555667999999999999988888999999999999999999988788888 999999999999
Q ss_pred cCCCccchhhcCCCCCCEEEcccCcCCC-CCCccCCCCCCccEEEeeCCcCCcccchhccCCCCC--CEEEccCCcc--c
Q 008628 107 NFQGTIPQTYAKGCNLSYLRLSGNHLEG-PLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSL--SFLNVRNNSL--S 181 (559)
Q Consensus 107 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~l~~n~l--~ 181 (559)
.++ .+|.. .+++|++|++++|.+.+ ..|..|+++++|++|++++|.+.+. .+..+++| ++|++++|.+ .
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccc
Confidence 998 55655 89999999999999986 3468999999999999999998853 45556666 9999999998 6
Q ss_pred cccCcccccC---------------------------ccCEEEccCCcC----------------------------CC-
Q 008628 182 GPIPECLGNS---------------------------TLEILDMRMNKF----------------------------SG- 205 (559)
Q Consensus 182 ~~~~~~~~~~---------------------------~L~~L~l~~n~~----------------------------~~- 205 (559)
+..|..+... .|+.+++++|.. .+
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 6666555432 255555555521 00
Q ss_pred ---CcchhhcCCCCccEEEccCCccccCCCccc-----cCCCCCcEEEeecCccCcccc-hhhcC---CCCCcEEEcccc
Q 008628 206 ---SLPQTFAKSCVLVSLNLNGNRLEGPLPPSL-----VNCRHLEVIDVGNNQINETFP-HWLDV---LPELQVLTLRSN 273 (559)
Q Consensus 206 ---~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~-~~~~~---l~~L~~L~L~~n 273 (559)
..+.. ...++|++|++++|.+++.+|..+ ..++.|+.+++..+.+ .+| .++.. ..+|++|++++|
T Consensus 265 ~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n 341 (562)
T 3a79_B 265 CSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDT 341 (562)
T ss_dssp HHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESS
T ss_pred HHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCC
Confidence 00111 122479999999999998888877 6777777777777776 233 33322 368999999999
Q ss_pred cccccCCCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHH
Q 008628 274 RFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMER 353 (559)
Q Consensus 274 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 353 (559)
.+.... ....+++|++|++++|.+++..|.. +.+++.|+.++...+.+..++... ....
T Consensus 342 ~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~----------------~~~~ 400 (562)
T 3a79_B 342 PFIHMV----CPPSPSSFTFLNFTQNVFTDSVFQG-CSTLKRLQTLILQRNGLKNFFKVA----------------LMTK 400 (562)
T ss_dssp CCCCCC----CCSSCCCCCEEECCSSCCCTTTTTT-CCSCSSCCEEECCSSCCCBTTHHH----------------HTTT
T ss_pred Cccccc----CccCCCCceEEECCCCccccchhhh-hcccCCCCEEECCCCCcCCcccch----------------hhhc
Confidence 875322 1256899999999999999876644 467888888888777655443210 0112
Q ss_pred hhccccEEEcCCcccccccc-hhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCe
Q 008628 354 ILTTFATIDLSSNRFQGEIS-QVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSV 432 (559)
Q Consensus 354 ~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 432 (559)
.+++|++|++++|.+++.+| ..+..+++|++|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|++
T Consensus 401 ~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~ 477 (562)
T 3a79_B 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQE 477 (562)
T ss_dssp TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSE
T ss_pred CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCE
Confidence 27899999999999998455 4588899999999999999987776654 78999999999999 56666679999999
Q ss_pred EeCcCCccccCCCC--CCCCCccCCccccCCCCCCCCC
Q 008628 433 LNLSNNQLEGPIPE--GPQFNTFANDSYSGNSGLCGFP 468 (559)
Q Consensus 433 L~l~~n~l~~~~p~--~~~~~~~~~~~~~~n~~lc~~~ 468 (559)
|++++|+++. +|. ...+..+..+.+.+||+.|+++
T Consensus 478 L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 478 LNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp EECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred EECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 9999999995 554 3556777888899999998765
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.9e-38 Score=325.21 Aligned_cols=347 Identities=20% Similarity=0.191 Sum_probs=238.4
Q ss_pred cEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccC
Q 008628 52 VELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGN 130 (559)
Q Consensus 52 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 130 (559)
+.++.+++.++ .+|..+. +++++|++++|.+.+..+..+. +++|++|+|++|.+++..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 45666666666 4454442 4667777777777655555555 666777777776666666666666666666666666
Q ss_pred cCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchh
Q 008628 131 HLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQT 210 (559)
Q Consensus 131 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 210 (559)
.+....+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+. .+..
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------------~~~~ 147 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI-----------------------SHRA 147 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE-----------------------CTTS
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcccee-----------------------Chhh
Confidence 66644444566666666666666666655566666666666666666655543 3444
Q ss_pred hcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCC
Q 008628 211 FAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPK 290 (559)
Q Consensus 211 ~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 290 (559)
+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.++... ....+
T Consensus 148 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~ 225 (477)
T 2id5_A 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGLN 225 (477)
T ss_dssp STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT--TTTCC
T ss_pred ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc--ccCcc
Confidence 5555666666666666665555556666666666666666666655566666666666666666555554443 22347
Q ss_pred ceEEEccCccceeecChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCccccc
Q 008628 291 LRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQG 370 (559)
Q Consensus 291 L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~ 370 (559)
|+.|++++|.+++. |...+. .+++|++|++++|.+++
T Consensus 226 L~~L~l~~n~l~~~-~~~~~~------------------------------------------~l~~L~~L~Ls~n~l~~ 262 (477)
T 2id5_A 226 LTSLSITHCNLTAV-PYLAVR------------------------------------------HLVYLRFLNLSYNPIST 262 (477)
T ss_dssp CSEEEEESSCCCSC-CHHHHT------------------------------------------TCTTCCEEECCSSCCCE
T ss_pred ccEEECcCCccccc-CHHHhc------------------------------------------CccccCeeECCCCcCCc
Confidence 88888888877643 322111 16788999999999998
Q ss_pred ccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEeCcCCccccCCCCCCCC
Q 008628 371 EISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPEGPQF 450 (559)
Q Consensus 371 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~ 450 (559)
..+..+..+++|++|+|++|++++..|..|..+++|++|+|++|.+++..+..|..+++|++|++++|++.|.++..+.+
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~ 342 (477)
T 2id5_A 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVF 342 (477)
T ss_dssp ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHH
T ss_pred cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHH
Confidence 88888999999999999999999988999999999999999999999888888899999999999999999888644333
Q ss_pred CccCCccccCCCCCCCCCC
Q 008628 451 NTFANDSYSGNSGLCGFPL 469 (559)
Q Consensus 451 ~~~~~~~~~~n~~lc~~~~ 469 (559)
.......+.++...|..|.
T Consensus 343 ~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 343 RRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp TTTTSSCCTTCCCBEEESG
T ss_pred hhhhccccCccCceeCCch
Confidence 3334455667777776553
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.5e-36 Score=309.95 Aligned_cols=345 Identities=26% Similarity=0.330 Sum_probs=266.7
Q ss_pred ccccCCcEEEccCCcccccCCC--CCCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCeE
Q 008628 25 LPWKNLEYLTLDSNLLQGSLPD--LPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETL 101 (559)
Q Consensus 25 ~~~~~L~~L~Ls~n~~~~~~~~--~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L 101 (559)
...++|+.|+++++.+.. +|. .+.+|++|++++|.+++..+ ++++++|++|++++|.+.+..+ +. +++|++|
T Consensus 43 ~~l~~l~~L~l~~~~i~~-l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS-IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHHTCCEEECCSSCCCC-CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred hHhccccEEecCCCCCcc-CcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 334777777777777664 232 23478888888887775443 7788888888888888874433 44 8888888
Q ss_pred eccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccc
Q 008628 102 DLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLS 181 (559)
Q Consensus 102 ~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 181 (559)
++++|.+++..+ +..+++|++|++++|.+.+ ++ .+..+++|++|++++ .+.+.. .+..+++|+.|++++|.+.
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~~~~--~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVTDLK--PLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-cccCch--hhccCCCCCEEECcCCcCC
Confidence 888888876543 7788888888888888774 33 577888888888864 444332 3778888888888888877
Q ss_pred cccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcC
Q 008628 182 GPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDV 261 (559)
Q Consensus 182 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 261 (559)
+. +......+|+.|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..
T Consensus 191 ~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 191 DI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp CC-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred CC-hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 43 333334458888888888876555 67788899999999888753 467788899999999998877655 778
Q ss_pred CCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccCCCCcccccccccccceeeeE
Q 008628 262 LPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESIS 341 (559)
Q Consensus 262 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 341 (559)
+++|++|++++|.+.+..+ ...+++|+.|++++|++.+..+. .
T Consensus 264 l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~~---~------------------------------ 306 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP----LAGLTALTNLELNENQLEDISPI---S------------------------------ 306 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCSCCGGG---G------------------------------
T ss_pred CCCCCEEECCCCccCcccc----ccCCCccCeEEcCCCcccCchhh---c------------------------------
Confidence 8899999999998876543 35688999999999988764331 1
Q ss_pred EeecCchhhHHHhhccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCc
Q 008628 342 LTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIP 421 (559)
Q Consensus 342 ~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 421 (559)
.+++|++|++++|.+++..| +..+++|++|++++|++++. ..+..+++|++|++++|++.+..|
T Consensus 307 ------------~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 307 ------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp ------------GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred ------------CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence 17789999999999998766 78999999999999999876 478899999999999999998877
Q ss_pred ccccCCCCCCeEeCcCCccccC
Q 008628 422 TQLASLNYLSVLNLSNNQLEGP 443 (559)
Q Consensus 422 ~~l~~l~~L~~L~l~~n~l~~~ 443 (559)
+..+++|+.|++++|++++.
T Consensus 371 --~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 371 --LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp --GTTCTTCCEEECCCEEEECC
T ss_pred --hhcCCCCCEEeccCCcccCC
Confidence 88999999999999999974
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.2e-36 Score=312.06 Aligned_cols=373 Identities=27% Similarity=0.337 Sum_probs=255.3
Q ss_pred CCCccCEEECCCCCCCCCCcccc--cCCcEEEccCCcccccCCCCCCC----------------ccEEEeeeccCCcccC
Q 008628 5 GVHTLYFLDLSRNFLTSIDHLPW--KNLEYLTLDSNLLQGSLPDLPPH----------------MVELLISNNSLTGEIP 66 (559)
Q Consensus 5 ~l~~L~~L~ls~n~~~~i~~~~~--~~L~~L~Ls~n~~~~~~~~~~~~----------------L~~L~L~~n~i~~~~~ 66 (559)
..++|++|++++|.+.++|..+. ++|++|++++|.+.+.+|..+.+ +++|++++|.+++ +|
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp 87 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence 45789999999999999998776 99999999999999988887763 5889999999885 34
Q ss_pred ccCCCCCCCCEEEcccCcCccccCccccCcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCc
Q 008628 67 SSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKL 146 (559)
Q Consensus 67 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 146 (559)
.. .++|++|++++|.+.+ +|.. .++|++|++++|.+++. |.. .++|++|++++|.+.+ +| .++++++|
T Consensus 88 ~~---~~~L~~L~l~~n~l~~-lp~~--~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L 155 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTE-LPEL--PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFL 155 (454)
T ss_dssp SC---CTTCSEEECCSSCCSS-CCCC--CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred CC---cCCCCEEEccCCcCCc-cccc--cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCC
Confidence 32 4789999999999985 6643 48899999999988853 221 2689999999999985 67 68999999
Q ss_pred cEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCc
Q 008628 147 HFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNR 226 (559)
Q Consensus 147 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 226 (559)
++|++++|.+++ +|.. ..+|++|++++|.+.+ +|......+|+.|++++|.+++ +|.. .++|++|++++|.
T Consensus 156 ~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~ 226 (454)
T 1jl5_A 156 KIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNI 226 (454)
T ss_dssp CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSC
T ss_pred CEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-CccccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCc
Confidence 999999999885 4543 3589999999999986 5654444559999999998885 4432 2589999999999
Q ss_pred cccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecC
Q 008628 227 LEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLP 306 (559)
Q Consensus 227 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 306 (559)
++ .+| .+..+++|++|++++|.+++. |. ..++|++|++++|++.+ ++. ..++|+.|++++|.+++...
T Consensus 227 l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-l~~-----~~~~L~~L~ls~N~l~~l~~ 294 (454)
T 1jl5_A 227 LE-ELP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-LPE-----LPQSLTFLDVSENIFSGLSE 294 (454)
T ss_dssp CS-SCC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSEESC
T ss_pred CC-ccc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-cCc-----ccCcCCEEECcCCccCcccC
Confidence 88 556 488899999999999988763 33 24789999999999876 332 24789999999999887321
Q ss_pred hHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhhcCCCCCEEE
Q 008628 307 IWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLN 386 (559)
Q Consensus 307 ~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~ 386 (559)
. .+.++.++...+.+..+... .++|++|++++|.+++ +|. .+++|++|+
T Consensus 295 ~-----~~~L~~L~l~~N~l~~i~~~----------------------~~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~ 343 (454)
T 1jl5_A 295 L-----PPNLYYLNASSNEIRSLCDL----------------------PPSLEELNVSNNKLIE-LPA---LPPRLERLI 343 (454)
T ss_dssp C-----CTTCCEEECCSSCCSEECCC----------------------CTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred c-----CCcCCEEECcCCcCCcccCC----------------------cCcCCEEECCCCcccc-ccc---cCCcCCEEE
Confidence 1 13455555555544332211 3589999999999986 454 368999999
Q ss_pred ccCCcCCCCCCccccCCCCCCEEeCCCCcCCc--cCcccccCC-------------CCCCeEeCcCCcccc--CCCC
Q 008628 387 ISHNNLTGGIPSSLRNLTELESLDLSSNKLAG--RIPTQLASL-------------NYLSVLNLSNNQLEG--PIPE 446 (559)
Q Consensus 387 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l-------------~~L~~L~l~~n~l~~--~~p~ 446 (559)
+++|++++ +|. .+++|++|++++|++++ .+|..+..+ ++|++|++++|++++ .+|.
T Consensus 344 L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 344 ASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------------
T ss_pred CCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh
Confidence 99999984 555 47899999999999998 788888877 889999999999997 6663
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=8.3e-36 Score=308.60 Aligned_cols=343 Identities=25% Similarity=0.349 Sum_probs=291.4
Q ss_pred CCccCEEECCCCCCCCCCcccc-cCCcEEEccCCcccccCC-CCCCCccEEEeeeccCCcccCccCCCCCCCCEEEcccC
Q 008628 6 VHTLYFLDLSRNFLTSIDHLPW-KNLEYLTLDSNLLQGSLP-DLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNN 83 (559)
Q Consensus 6 l~~L~~L~ls~n~~~~i~~~~~-~~L~~L~Ls~n~~~~~~~-~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 83 (559)
+++++.|+++++.++.+|.... ++|++|++++|.+.+..+ ..+.+|++|++++|.+++..+ ++++++|++|++++|
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n 122 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC
Confidence 5789999999999998886433 999999999999987654 233499999999999996654 899999999999999
Q ss_pred cCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccch
Q 008628 84 SLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPE 162 (559)
Q Consensus 84 ~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 162 (559)
.+.+. +. +. +++|++|++++|.+.+. + .+..+++|++|+++ +.+.+. ..+.++++|++|++++|.+.+. .
T Consensus 123 ~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~ 193 (466)
T 1o6v_A 123 QITDI-DP-LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVSDI--S 193 (466)
T ss_dssp CCCCC-GG-GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCCCC--G
T ss_pred CCCCC-hH-HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCCCC--h
Confidence 99854 44 55 99999999999999864 3 48999999999997 445433 3489999999999999998854 3
Q ss_pred hccCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCc
Q 008628 163 YLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLE 242 (559)
Q Consensus 163 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 242 (559)
.+..+++|++|++++|.+.+..+ .....+|+.|++++|.+.+. ..+..+++|+.|++++|.+++..+ +..+++|+
T Consensus 194 ~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 268 (466)
T 1o6v_A 194 VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLT 268 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCC
Confidence 58899999999999999987655 33345599999999999854 468889999999999999986644 88999999
Q ss_pred EEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccCC
Q 008628 243 VIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDN 322 (559)
Q Consensus 243 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~ 322 (559)
+|++++|.+++..+ +..+++|++|++++|++.+..+ ...+++|+.|++++|++++..|..
T Consensus 269 ~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~-------------- 328 (466)
T 1o6v_A 269 ELKLGANQISNISP--LAGLTALTNLELNENQLEDISP----ISNLKNLTYLTLYFNNISDISPVS-------------- 328 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG----GGGCTTCSEEECCSSCCSCCGGGG--------------
T ss_pred EEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh----hcCCCCCCEEECcCCcCCCchhhc--------------
Confidence 99999999988655 8899999999999999986544 367899999999999998765411
Q ss_pred CCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccC
Q 008628 323 STEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRN 402 (559)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 402 (559)
.+++|++|++++|.+++. ..+..+++|+.|++++|++++..| +..
T Consensus 329 -------------------------------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 373 (466)
T 1o6v_A 329 -------------------------------SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LAN 373 (466)
T ss_dssp -------------------------------GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTT
T ss_pred -------------------------------cCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhc
Confidence 178899999999999976 468899999999999999998877 889
Q ss_pred CCCCCEEeCCCCcCCcc
Q 008628 403 LTELESLDLSSNKLAGR 419 (559)
Q Consensus 403 l~~L~~L~Ls~n~l~~~ 419 (559)
+++|+.|++++|.+++.
T Consensus 374 l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 374 LTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CTTCCEEECCCEEEECC
T ss_pred CCCCCEEeccCCcccCC
Confidence 99999999999999963
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-36 Score=313.82 Aligned_cols=344 Identities=22% Similarity=0.176 Sum_probs=194.6
Q ss_pred CEEECCCCCCCCCCcccccCCcEEEccCCcccccCCCCCC---CccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCc
Q 008628 10 YFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLPP---HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS 86 (559)
Q Consensus 10 ~~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~~~~~~~~---~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~ 86 (559)
+.+++++++++.+|..+.++++.|||++|.+++..+..+. +|++|+|++|.+++..|..|.++++|++|++++|.+.
T Consensus 14 ~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp TEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC
Confidence 4667777777777766666666666666666654443332 5555555555555554555555555555555555554
Q ss_pred cccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhcc
Q 008628 87 GQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLG 165 (559)
Q Consensus 87 ~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 165 (559)
...+..+. +++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+.
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 173 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHT
T ss_pred ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhc
Confidence 33333333 55555555555555544444455555555555555555444444455555555555555554444334444
Q ss_pred CCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEE
Q 008628 166 NSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVID 245 (559)
Q Consensus 166 ~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 245 (559)
.+++|+.|++++|.+. +..+..+..+++|+.|++++|...+.++.......+|++|+
T Consensus 174 ~l~~L~~L~l~~n~i~-----------------------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 230 (477)
T 2id5_A 174 HLHGLIVLRLRHLNIN-----------------------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230 (477)
T ss_dssp TCTTCCEEEEESCCCC-----------------------EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEE
T ss_pred ccCCCcEEeCCCCcCc-----------------------EeChhhcccCcccceeeCCCCccccccCcccccCccccEEE
Confidence 4444444444444433 23333444555566666655554444444444444666666
Q ss_pred eecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccCCCCc
Q 008628 246 VGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTE 325 (559)
Q Consensus 246 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~ 325 (559)
+++|.+++..+..+..+++|++|++++|++.+..+..+ ..
T Consensus 231 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~-------------------------------------- 270 (477)
T 2id5_A 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML--HE-------------------------------------- 270 (477)
T ss_dssp EESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC--TT--------------------------------------
T ss_pred CcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc--cc--------------------------------------
Confidence 66666665544555555666666665555543322221 12
Q ss_pred ccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCC
Q 008628 326 VNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTE 405 (559)
Q Consensus 326 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 405 (559)
+++|++|++++|.+.+..|..+..+++|+.|+|++|++++..+..|..+++
T Consensus 271 -----------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 321 (477)
T 2id5_A 271 -----------------------------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321 (477)
T ss_dssp -----------------------------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGG
T ss_pred -----------------------------cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcc
Confidence 456666777777777677777788888888888888888777777888888
Q ss_pred CCEEeCCCCcCCccCcccccCCCCCCeEeCcCCccccCCCC
Q 008628 406 LESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPE 446 (559)
Q Consensus 406 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~ 446 (559)
|++|++++|++...-+. ..-......+++.++...|..|.
T Consensus 322 L~~L~l~~N~l~c~c~~-~~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 322 LETLILDSNPLACDCRL-LWVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp CCEEECCSSCEECSGGG-HHHHTTTTSSCCTTCCCBEEESG
T ss_pred cCEEEccCCCccCccch-HhHHhhhhccccCccCceeCCch
Confidence 88888888887753221 11112334455666666666664
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=8.4e-36 Score=306.13 Aligned_cols=353 Identities=18% Similarity=0.168 Sum_probs=241.0
Q ss_pred cCCCccCEEECCCCCCCCCCcccc-cCCcEEEccCCcccccCCCCCCCccEEEeeeccCCcccCccCCCCCCCCEEEccc
Q 008628 4 IGVHTLYFLDLSRNFLTSIDHLPW-KNLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSN 82 (559)
Q Consensus 4 ~~l~~L~~L~ls~n~~~~i~~~~~-~~L~~L~Ls~n~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 82 (559)
+++++|++|++++|.++.+|.... ++|++|++++|.+++.....+.+|++|++++|.+++. + ++++++|++|++++
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDT 115 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCS
T ss_pred hHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCC
Confidence 456777888888887776663222 7777777777777765333444777777777777753 2 66777777777777
Q ss_pred CcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccc
Q 008628 83 NSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIP 161 (559)
Q Consensus 83 n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 161 (559)
|.+.+ ++ +. +++|++|++++|.+++. + ++.+++|++|++++|...+.+ .++.+++|++|++++|.+++ +|
T Consensus 116 N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~ 186 (457)
T 3bz5_A 116 NKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD 186 (457)
T ss_dssp SCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC
T ss_pred CcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec
Confidence 77764 33 44 77777777777777753 2 666777777777777544344 36667777777777777765 33
Q ss_pred hhccCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCC
Q 008628 162 EYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHL 241 (559)
Q Consensus 162 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L 241 (559)
+..+++|+.|++++|.+.+. .......|+.|++++|.+++ +| +..+++|+.|++++|++++.. +..+++|
T Consensus 187 --l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L 256 (457)
T 3bz5_A 187 --VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKL 256 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTC
T ss_pred --cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCC
Confidence 66677777777777777653 12222336777777776665 34 566666777777777666542 3345566
Q ss_pred cEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccC
Q 008628 242 EVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDD 321 (559)
Q Consensus 242 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~ 321 (559)
+.|++++| +|++|++++|.+.+.++. ..+++|+.|++++|+..+.+|.. ...++.++.
T Consensus 257 ~~L~l~~n--------------~L~~L~l~~n~~~~~~~~----~~l~~L~~L~Ls~n~~l~~l~~~----~~~L~~L~l 314 (457)
T 3bz5_A 257 TTLHCIQT--------------DLLEIDLTHNTQLIYFQA----EGCRKIKELDVTHNTQLYLLDCQ----AAGITELDL 314 (457)
T ss_dssp CEEECTTC--------------CCSCCCCTTCTTCCEEEC----TTCTTCCCCCCTTCTTCCEEECT----TCCCSCCCC
T ss_pred CEEeccCC--------------CCCEEECCCCccCCcccc----cccccCCEEECCCCcccceeccC----CCcceEech
Confidence 66665543 456677777777666552 45788999999999887776631 223333322
Q ss_pred CCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCcccc
Q 008628 322 NSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLR 401 (559)
Q Consensus 322 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 401 (559)
.. +++|++|++++|++++. + ++.+++|+.|++++|++++
T Consensus 315 ~~-------------------------------~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~------- 353 (457)
T 3bz5_A 315 SQ-------------------------------NPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD------- 353 (457)
T ss_dssp TT-------------------------------CTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-------
T ss_pred hh-------------------------------cccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-------
Confidence 11 57889999999999984 3 8889999999999999885
Q ss_pred CCCCCCEEeCCCCcCCccCcccccCCCCCCeEeCcCCccccCCCCC
Q 008628 402 NLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPEG 447 (559)
Q Consensus 402 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~ 447 (559)
++.|+.|++++|.+.+. ..+..|+.+++++|+++|.+|..
T Consensus 354 -l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 354 -FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp -CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred -ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 24677788899988865 34567888999999999999964
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.6e-34 Score=294.74 Aligned_cols=371 Identities=25% Similarity=0.336 Sum_probs=249.4
Q ss_pred ccCCCccCEEECCCCCCC-CCCcccc---------------cCCcEEEccCCcccccCCCCCCCccEEEeeeccCCcccC
Q 008628 3 DIGVHTLYFLDLSRNFLT-SIDHLPW---------------KNLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTGEIP 66 (559)
Q Consensus 3 ~~~l~~L~~L~ls~n~~~-~i~~~~~---------------~~L~~L~Ls~n~~~~~~~~~~~~L~~L~L~~n~i~~~~~ 66 (559)
++++++|++|++++|.+. .+|..+. .++++|++++|.+++ +|..+++|++|++++|.+++ +|
T Consensus 30 i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~~~~L~~L~l~~n~l~~-lp 107 (454)
T 1jl5_A 30 AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPELPPHLESLVASCNSLTE-LP 107 (454)
T ss_dssp ----CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSCCTTCSEEECCSSCCSS-CC
T ss_pred HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCCcCCCCEEEccCCcCCc-cc
Confidence 567888899999988877 7776554 246889999988875 45566789999999998886 55
Q ss_pred ccCCCCCCCCEEEcccCcCccccCccccCcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCc
Q 008628 67 SSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKL 146 (559)
Q Consensus 67 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 146 (559)
.. +++|++|++++|.+.+ ++.. .++|++|++++|.+++ +| .++++++|++|++++|++.+ +|..+ ++|
T Consensus 108 ~~---~~~L~~L~l~~n~l~~-l~~~--~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L 175 (454)
T 1jl5_A 108 EL---PQSLKSLLVDNNNLKA-LSDL--PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSL 175 (454)
T ss_dssp CC---CTTCCEEECCSSCCSC-CCSC--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTC
T ss_pred cc---cCCCcEEECCCCccCc-ccCC--CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccc
Confidence 43 4788899999988874 3322 3688999999998885 56 58888999999999998884 55443 588
Q ss_pred cEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCc
Q 008628 147 HFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNR 226 (559)
Q Consensus 147 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 226 (559)
++|++++|.+++ +| .+..+++|++|++++|.+.+ +|... .+|+.|++++|.+. .+|. +..+++|++|++++|+
T Consensus 176 ~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~--~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 176 EFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP--LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNL 248 (454)
T ss_dssp CEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC--TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSC
T ss_pred cEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc--CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCc
Confidence 999999998886 45 58888999999999998885 34332 36889999999887 5663 7888889999999998
Q ss_pred cccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecC
Q 008628 227 LEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLP 306 (559)
Q Consensus 227 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 306 (559)
+++ +|. .+++|++|++++|.+++ +|.. .++|++|++++|++.+.. . -.++|+.|++++|.+++...
T Consensus 249 l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~-~-----~~~~L~~L~l~~N~l~~i~~ 314 (454)
T 1jl5_A 249 LKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS-E-----LPPNLYYLNASSNEIRSLCD 314 (454)
T ss_dssp CSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEES-C-----CCTTCCEEECCSSCCSEECC
T ss_pred CCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCccc-C-----cCCcCCEEECcCCcCCcccC
Confidence 885 343 24788899999998876 3332 478889999998887632 1 12578888998888876321
Q ss_pred hHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhhcCCCCCEEE
Q 008628 307 IWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLN 386 (559)
Q Consensus 307 ~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~ 386 (559)
..+.++.++...+.+..++.. +++|++|++++|.+++ +|. .+++|++|+
T Consensus 315 -----~~~~L~~L~Ls~N~l~~lp~~----------------------~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~ 363 (454)
T 1jl5_A 315 -----LPPSLEELNVSNNKLIELPAL----------------------PPRLERLIASFNHLAE-VPE---LPQNLKQLH 363 (454)
T ss_dssp -----CCTTCCEEECCSSCCSCCCCC----------------------CTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred -----CcCcCCEEECCCCcccccccc----------------------CCcCCEEECCCCcccc-ccc---hhhhccEEE
Confidence 113566666666554443321 5789999999999985 554 578999999
Q ss_pred ccCCcCCC--CCCccccCC-------------CCCCEEeCCCCcCCc--cCcccccCCCCCCeEeCcCCccccCCC
Q 008628 387 ISHNNLTG--GIPSSLRNL-------------TELESLDLSSNKLAG--RIPTQLASLNYLSVLNLSNNQLEGPIP 445 (559)
Q Consensus 387 Ls~n~l~~--~~~~~~~~l-------------~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~l~~n~l~~~~p 445 (559)
+++|++++ .+|..++.+ ++|++|++++|.+++ .+|. +++.|.+.+|.+.+.+|
T Consensus 364 L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~ 433 (454)
T 1jl5_A 364 VEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYE 433 (454)
T ss_dssp CCSSCCSSCCCCCTTCCEEECCC-----------------------------------------------------
T ss_pred CCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCccc
Confidence 99999998 788888887 889999999999997 5553 46677888888887765
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.2e-34 Score=289.95 Aligned_cols=332 Identities=22% Similarity=0.261 Sum_probs=209.0
Q ss_pred CccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcc
Q 008628 50 HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLS 128 (559)
Q Consensus 50 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 128 (559)
+++.|+++++.++...+..+.++++|++|++++|.+.+..+..+. +++|++|++++|.+++..|..++.+++|++|+++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 566666666666544444455566666666666666544444444 6666666666666665555556666666666666
Q ss_pred cCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcc
Q 008628 129 GNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLP 208 (559)
Q Consensus 129 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 208 (559)
+|.+....+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 126 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------- 180 (390)
T 3o6n_A 126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV------------------------- 180 (390)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-------------------------
T ss_pred CCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-------------------------
Confidence 6666533333345566666666666666555555555566666666665555432
Q ss_pred hhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCC
Q 008628 209 QTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPF 288 (559)
Q Consensus 209 ~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 288 (559)
.+..+++|+.+++++|.+++ +...++|++|++++|.+...... ..++|++|++++|.+.+. .....+
T Consensus 181 -~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~----~~l~~l 247 (390)
T 3o6n_A 181 -DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT----AWLLNY 247 (390)
T ss_dssp -CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC----GGGGGC
T ss_pred -ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeecccc---ccccccEEECCCCCCccc----HHHcCC
Confidence 12334455555555555442 22334566666666666543221 235666677776666543 123556
Q ss_pred CCceEEEccCccceeecChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCccc
Q 008628 289 PKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRF 368 (559)
Q Consensus 289 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l 368 (559)
++|++|++++|.+++..|..+.. +++|++|++++|.+
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~-------------------------------------------l~~L~~L~L~~n~l 284 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFVK-------------------------------------------MQRLERLYISNNRL 284 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGTT-------------------------------------------CSSCCEEECCSSCC
T ss_pred CCccEEECCCCcCCCcChhHccc-------------------------------------------cccCCEEECCCCcC
Confidence 77777777777777665543211 66788888888888
Q ss_pred ccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEeCcCCccccCCCCCC
Q 008628 369 QGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPEGP 448 (559)
Q Consensus 369 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~ 448 (559)
++. +..+..+++|++|+|++|+++ .+|..+..+++|++|++++|.+... | +..+++|+.|++++|++.|.+.. .
T Consensus 285 ~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~ 358 (390)
T 3o6n_A 285 VAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-A 358 (390)
T ss_dssp CEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-H
T ss_pred ccc-CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-H
Confidence 754 455677899999999999998 5566788889999999999999864 3 67889999999999999986543 2
Q ss_pred CCCccCCccccCCCCCCCCC
Q 008628 449 QFNTFANDSYSGNSGLCGFP 468 (559)
Q Consensus 449 ~~~~~~~~~~~~n~~lc~~~ 468 (559)
.+..+....+.+++..|..+
T Consensus 359 ~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 359 LFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp HTTTCCTTTBCCCCSCCCTT
T ss_pred HHHHHHhhcccccCceeccc
Confidence 34455555666676666643
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.6e-34 Score=303.76 Aligned_cols=332 Identities=22% Similarity=0.255 Sum_probs=213.2
Q ss_pred CccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcc
Q 008628 50 HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLS 128 (559)
Q Consensus 50 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 128 (559)
+++.+++++|.+....+..+.++++|++|++++|.+.+..|..+. +++|++|+|++|.+++..|..|+.+++|++|+++
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 555556655555544444455555566666666555544444444 5555555555555555555555555555555555
Q ss_pred cCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcc
Q 008628 129 GNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLP 208 (559)
Q Consensus 129 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 208 (559)
+|.+.+..+..|+++++|++|++++|.+.+..|..|..+++|++|++++|.+.+..
T Consensus 132 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------------------ 187 (597)
T 3oja_B 132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD------------------------ 187 (597)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC------------------------
T ss_pred CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC------------------------
Confidence 55555333333455555555555555555555555555555555555555554321
Q ss_pred hhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCC
Q 008628 209 QTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPF 288 (559)
Q Consensus 209 ~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 288 (559)
+..+++|+.|++++|.+++ +...++|+.|++++|.+....+.. .++|+.|++++|.+.+. ..+..+
T Consensus 188 --~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~----~~l~~l 253 (597)
T 3oja_B 188 --LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT----AWLLNY 253 (597)
T ss_dssp --GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC----GGGGGC
T ss_pred --hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC----hhhccC
Confidence 3334556666666665542 233456667777776665443321 25677777777776642 223567
Q ss_pred CCceEEEccCccceeecChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCccc
Q 008628 289 PKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRF 368 (559)
Q Consensus 289 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l 368 (559)
++|+.|++++|.+++..|..+.. +++|++|++++|.+
T Consensus 254 ~~L~~L~Ls~N~l~~~~~~~~~~-------------------------------------------l~~L~~L~Ls~N~l 290 (597)
T 3oja_B 254 PGLVEVDLSYNELEKIMYHPFVK-------------------------------------------MQRLERLYISNNRL 290 (597)
T ss_dssp TTCSEEECCSSCCCEEESGGGTT-------------------------------------------CSSCCEEECTTSCC
T ss_pred CCCCEEECCCCccCCCCHHHhcC-------------------------------------------ccCCCEEECCCCCC
Confidence 77888888888877766644321 67888899999988
Q ss_pred ccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEeCcCCccccCCCCCC
Q 008628 369 QGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPEGP 448 (559)
Q Consensus 369 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~ 448 (559)
++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+.+.. +..+++|+.|++++|++.|.++..
T Consensus 291 ~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~- 364 (597)
T 3oja_B 291 VA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRA- 364 (597)
T ss_dssp CE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHH-
T ss_pred CC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHH-
Confidence 86 4555677899999999999998 56777888999999999999998652 677899999999999999876432
Q ss_pred CCCccCCccccCCCCCCCCC
Q 008628 449 QFNTFANDSYSGNSGLCGFP 468 (559)
Q Consensus 449 ~~~~~~~~~~~~n~~lc~~~ 468 (559)
.+..+....+.+++..|+.+
T Consensus 365 ~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 365 LFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp HTTTCCTTTBCCCCCCCCTT
T ss_pred HHHHHhhhccccccccCCcc
Confidence 34556666677888888763
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.7e-33 Score=276.89 Aligned_cols=304 Identities=25% Similarity=0.316 Sum_probs=178.7
Q ss_pred CCCCCEEEcccCcCccccCccccCcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEe
Q 008628 72 LSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDV 151 (559)
Q Consensus 72 l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 151 (559)
+++|++|+++++.+. .++..-.+++|++|++++|.+++..+ +..+++|++|++++|.+.. + +.+.++++|++|++
T Consensus 43 l~~L~~L~l~~~~i~-~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 43 LESITKLVVAGEKVA-SIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYL 117 (347)
T ss_dssp HTTCSEEECCSSCCC-CCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEEC
T ss_pred cccccEEEEeCCccc-cchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEEC
Confidence 444444444444443 22221114444444444444443222 4445555555555554442 1 23445555555555
Q ss_pred eCCcCCcccchhccCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCC
Q 008628 152 GNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPL 231 (559)
Q Consensus 152 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~ 231 (559)
++|.+.+..+ +..+++|++|++++|.....++.......|+.|++++|.+.+..+ +..+++|++|++++|.+.+..
T Consensus 118 ~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~ 193 (347)
T 4fmz_A 118 NEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDIS 193 (347)
T ss_dssp TTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCG
T ss_pred cCCcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccc
Confidence 5555443221 445555555555555433333332222335555555555543322 556666666666666665432
Q ss_pred CccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecChHhhh
Q 008628 232 PPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLN 311 (559)
Q Consensus 232 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 311 (559)
+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.+.+..+ ...+++|++|++++|.+++. + . +.
T Consensus 194 ~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~-~-~-~~ 262 (347)
T 4fmz_A 194 P--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP----LANLSQLTWLEIGTNQISDI-N-A-VK 262 (347)
T ss_dssp G--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCC-G-G-GT
T ss_pred c--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc----hhcCCCCCEEECCCCccCCC-h-h-Hh
Confidence 2 5666667777777766655443 5566677777777776654332 35567777777777766542 1 0 00
Q ss_pred cccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhhcCCCCCEEEccCCc
Q 008628 312 GFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNN 391 (559)
Q Consensus 312 ~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 391 (559)
.+++|++|++++|.+++. +.+..+++|++|++++|.
T Consensus 263 ------------------------------------------~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 263 ------------------------------------------DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp ------------------------------------------TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC
T ss_pred ------------------------------------------cCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCc
Confidence 166788888888888764 357888889999999998
Q ss_pred CCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEeCcCCccc
Q 008628 392 LTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE 441 (559)
Q Consensus 392 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 441 (559)
+++..+..+..+++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 299 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 299 LGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 888888888888999999999999887666 778889999999998875
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=7.2e-32 Score=268.32 Aligned_cols=301 Identities=24% Similarity=0.395 Sum_probs=205.3
Q ss_pred CccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcc
Q 008628 50 HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLS 128 (559)
Q Consensus 50 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 128 (559)
+|++|+++++.+.. ++ .+..+++|++|++++|.+.+ ++. +. +++|++|++++|.++.. ..+..+++|++|+++
T Consensus 45 ~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 45 SITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLN 118 (347)
T ss_dssp TCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECT
T ss_pred cccEEEEeCCcccc-ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECc
Confidence 55666666665553 22 25566666666666666653 333 33 66666666666666542 246666667777776
Q ss_pred cCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcc
Q 008628 129 GNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLP 208 (559)
Q Consensus 129 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 208 (559)
+|.+.+. +. +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ ......|+.|++++|.+.+..+
T Consensus 119 ~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~ 194 (347)
T 4fmz_A 119 EDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP 194 (347)
T ss_dssp TSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG
T ss_pred CCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc
Confidence 6666632 22 6666677777776665443333 36666777777777766664332 2233347777777776664332
Q ss_pred hhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCC
Q 008628 209 QTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPF 288 (559)
Q Consensus 209 ~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 288 (559)
+..+++|+.+++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. .....+
T Consensus 195 --~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~----~~~~~l 264 (347)
T 4fmz_A 195 --LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI----NAVKDL 264 (347)
T ss_dssp --GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC----GGGTTC
T ss_pred --ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC----hhHhcC
Confidence 6677788888888887775433 6777888888888888776544 77788888888888877653 123567
Q ss_pred CCceEEEccCccceeecChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCccc
Q 008628 289 PKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRF 368 (559)
Q Consensus 289 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l 368 (559)
++|+.|++++|.+++. + . +. .+++|++|++++|.+
T Consensus 265 ~~L~~L~l~~n~l~~~-~-~-~~------------------------------------------~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI-S-V-LN------------------------------------------NLSQLNSLFLNNNQL 299 (347)
T ss_dssp TTCCEEECCSSCCCCC-G-G-GG------------------------------------------GCTTCSEEECCSSCC
T ss_pred CCcCEEEccCCccCCC-h-h-hc------------------------------------------CCCCCCEEECcCCcC
Confidence 8888888888887753 1 1 11 167899999999999
Q ss_pred ccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCC
Q 008628 369 QGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 417 (559)
Q Consensus 369 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 417 (559)
++..+..+..+++|++|++++|++++..| +..+++|++|++++|.++
T Consensus 300 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 300 GNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 99999999999999999999999997766 888999999999999875
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.3e-32 Score=276.31 Aligned_cols=311 Identities=21% Similarity=0.207 Sum_probs=226.2
Q ss_pred CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEE
Q 008628 95 NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLN 174 (559)
Q Consensus 95 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 174 (559)
+.+++.|+++++.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 44555555555555544444445555555555555555544444555555555555555555555555555555666666
Q ss_pred ccCCccccccCccccc-CccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCc
Q 008628 175 VRNNSLSGPIPECLGN-STLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINE 253 (559)
Q Consensus 175 l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 253 (559)
+++|.+....+..+.. .+|+.|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+.|++++|.+++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc
Confidence 6666555433333332 2366666666666666677788899999999999999865 35667899999999998865
Q ss_pred ccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccCCCCccccccccc
Q 008628 254 TFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLN 333 (559)
Q Consensus 254 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~ 333 (559)
. ...++|++|++++|.+..... ...++|+.|++++|.+++.. .+.
T Consensus 201 ~-----~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~l~~~~---~l~---------------------- 245 (390)
T 3o6n_A 201 L-----AIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNNLTDTA---WLL---------------------- 245 (390)
T ss_dssp E-----ECCSSCSEEECCSSCCCEEEC-----CCCSSCCEEECCSSCCCCCG---GGG----------------------
T ss_pred c-----CCCCcceEEECCCCeeeeccc-----cccccccEEECCCCCCcccH---HHc----------------------
Confidence 3 345789999999999876532 22578999999999987541 111
Q ss_pred ccceeeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCC
Q 008628 334 YSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSS 413 (559)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 413 (559)
.+++|++|++++|.+++..|..+..+++|++|+|++|++++ +|..+..+++|++|++++
T Consensus 246 --------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 246 --------------------NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSH 304 (390)
T ss_dssp --------------------GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCS
T ss_pred --------------------CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCC
Confidence 17889999999999999999999999999999999999985 456678899999999999
Q ss_pred CcCCccCcccccCCCCCCeEeCcCCccccCCCCCCCCCccCCccccCCCCCCCC
Q 008628 414 NKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPEGPQFNTFANDSYSGNSGLCGF 467 (559)
Q Consensus 414 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~ 467 (559)
|++. .+|..+..+++|++|++++|+++.. | ...+..+..+.+.+|+..|.+
T Consensus 305 n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 305 NHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp SCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHH
T ss_pred Ccce-ecCccccccCcCCEEECCCCcccee-C-chhhccCCEEEcCCCCccchh
Confidence 9999 5677788999999999999999865 4 346678888899999988854
No 39
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.3e-33 Score=273.10 Aligned_cols=259 Identities=33% Similarity=0.567 Sum_probs=191.6
Q ss_pred CCccEEEeeCCcCCc--ccchhccCCCCCCEEEccC-CccccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEE
Q 008628 144 VKLHFLDVGNNNLSG--PIPEYLGNSTSLSFLNVRN-NSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSL 220 (559)
Q Consensus 144 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 220 (559)
.++++|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|. .+..+++|++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~-----------------------~l~~l~~L~~L 106 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-----------------------AIAKLTQLHYL 106 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-----------------------GGGGCTTCSEE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh-----------------------hHhcCCCCCEE
Confidence 467788888888777 6777777777777777774 666655444 44445555555
Q ss_pred EccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCC-CceEEEccCc
Q 008628 221 NLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFP-KLRIIDLSYN 299 (559)
Q Consensus 221 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~-~L~~L~l~~n 299 (559)
++++|.+++..|..+..+++|++|++++|.+++.+|..+..+++|++|++++|++.+.+|..+ ..++ +|++|++++|
T Consensus 107 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRN 184 (313)
T ss_dssp EEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSS
T ss_pred ECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH--hhhhhcCcEEECcCC
Confidence 555555555555555555555555555555555555555555555555555555554444433 3344 6677777777
Q ss_pred cceeecChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhhcC
Q 008628 300 RFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKL 379 (559)
Q Consensus 300 ~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l 379 (559)
.+++..|..+.. ++ |++|++++|.+++..|..+..+
T Consensus 185 ~l~~~~~~~~~~-------------------------------------------l~-L~~L~Ls~N~l~~~~~~~~~~l 220 (313)
T 1ogq_A 185 RLTGKIPPTFAN-------------------------------------------LN-LAFVDLSRNMLEGDASVLFGSD 220 (313)
T ss_dssp EEEEECCGGGGG-------------------------------------------CC-CSEEECCSSEEEECCGGGCCTT
T ss_pred eeeccCChHHhC-------------------------------------------Cc-ccEEECcCCcccCcCCHHHhcC
Confidence 777666644311 33 8889999999998899999999
Q ss_pred CCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEeCcCCccccCCCCCCCCCccCCcccc
Q 008628 380 NSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPEGPQFNTFANDSYS 459 (559)
Q Consensus 380 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~ 459 (559)
++|+.|+|++|.+++.+|. +..+++|++|++++|.+.+.+|..+..+++|++|++++|++++.+|....+..+....+.
T Consensus 221 ~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~ 299 (313)
T 1ogq_A 221 KNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299 (313)
T ss_dssp SCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTC
T ss_pred CCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhc
Confidence 9999999999999977766 788999999999999999999999999999999999999999999998888899999999
Q ss_pred CCCCCCCCCCCCCC
Q 008628 460 GNSGLCGFPLSKSC 473 (559)
Q Consensus 460 ~n~~lc~~~~~~~c 473 (559)
+|+++||.|.. .|
T Consensus 300 ~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 300 NNKCLCGSPLP-AC 312 (313)
T ss_dssp SSSEEESTTSS-CC
T ss_pred CCCCccCCCCC-CC
Confidence 99999998876 46
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.9e-32 Score=278.13 Aligned_cols=318 Identities=19% Similarity=0.214 Sum_probs=160.2
Q ss_pred cCCcEEEccCCcccccCCCC--CCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCeEecc
Q 008628 28 KNLEYLTLDSNLLQGSLPDL--PPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLR 104 (559)
Q Consensus 28 ~~L~~L~Ls~n~~~~~~~~~--~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~ 104 (559)
++|++|++++|.+.+. |.. +++|++|++++|.+++. + ++++++|++|++++|.+.+. + +. +++|++|+++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-TGIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCD 114 (457)
T ss_dssp TTCCEEECCSSCCCCC-TTGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECC
T ss_pred CCCCEEEccCCCcccC-hhhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECC
Confidence 5555555555555543 211 12555555555555532 2 45555555555555555432 2 33 5555555555
Q ss_pred CCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCcccccc
Q 008628 105 MNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPI 184 (559)
Q Consensus 105 ~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 184 (559)
+|.+++. | ++.+++|++|++++|.+.+. .++.+++|++|++++|...+.+ .+..+++|++|++++|.+.+.
T Consensus 115 ~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l- 185 (457)
T 3bz5_A 115 TNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL- 185 (457)
T ss_dssp SSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC-
T ss_pred CCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee-
Confidence 5555532 2 44555555555555555532 1445555555555555333222 244455555555555555432
Q ss_pred CcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCC
Q 008628 185 PECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPE 264 (559)
Q Consensus 185 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 264 (559)
| ......|+.|++++|.+++. .+..+++|+.|++++|++++ +| +..+++|++|++++|.+++.. +..+++
T Consensus 186 ~-l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~ 255 (457)
T 3bz5_A 186 D-VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSK 255 (457)
T ss_dssp C-CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTT
T ss_pred c-cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCC
Confidence 2 11122244444444444432 13444444444444444443 22 444444444444444444432 223344
Q ss_pred CcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccCCCCcccccccccccceeeeEEee
Q 008628 265 LQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTM 344 (559)
Q Consensus 265 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 344 (559)
|+.|++++| +|+.|++++|.+.+.+|. ..
T Consensus 256 L~~L~l~~n----------------~L~~L~l~~n~~~~~~~~---~~-------------------------------- 284 (457)
T 3bz5_A 256 LTTLHCIQT----------------DLLEIDLTHNTQLIYFQA---EG-------------------------------- 284 (457)
T ss_dssp CCEEECTTC----------------CCSCCCCTTCTTCCEEEC---TT--------------------------------
T ss_pred CCEEeccCC----------------CCCEEECCCCccCCcccc---cc--------------------------------
Confidence 444444332 233444555554444331 11
Q ss_pred cCchhhHHHhhccccEEEcCCcccccccchh--------hhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcC
Q 008628 345 KGNNIQMERILTTFATIDLSSNRFQGEISQV--------LGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKL 416 (559)
Q Consensus 345 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~--------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 416 (559)
+++|+.|++++|...+.+|.. ++++++|++|++++|++++. + ++.+++|+.|++++|++
T Consensus 285 ----------l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 285 ----------CRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp ----------CTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCC
T ss_pred ----------cccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCC
Confidence 456666666666655544431 34556777778888877764 2 67777788888888777
Q ss_pred CccCcccccCCCCCCeEeCcCCccccC
Q 008628 417 AGRIPTQLASLNYLSVLNLSNNQLEGP 443 (559)
Q Consensus 417 ~~~~p~~l~~l~~L~~L~l~~n~l~~~ 443 (559)
++ ++.|..|++++|.+.|.
T Consensus 352 ~~--------l~~L~~L~l~~n~l~g~ 370 (457)
T 3bz5_A 352 QD--------FSSVGKIPALNNNFEAE 370 (457)
T ss_dssp CB--------CTTGGGSSGGGTSEEEE
T ss_pred CC--------ccccccccccCCcEEec
Confidence 74 24566667777777765
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=7.4e-32 Score=287.40 Aligned_cols=311 Identities=22% Similarity=0.222 Sum_probs=240.2
Q ss_pred CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEE
Q 008628 95 NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLN 174 (559)
Q Consensus 95 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 174 (559)
+.+++.+++++|.+....+..+..+++|++|++++|.+.+..|..|+.+++|++|++++|.+.+..|..|+.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 55666666666666655555566666677777766666655555666677777777777766666666666677777777
Q ss_pred ccCCccccccCcccccC-ccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCc
Q 008628 175 VRNNSLSGPIPECLGNS-TLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINE 253 (559)
Q Consensus 175 l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 253 (559)
+++|.+.+..+..+... +|+.|++++|.+.+..|..+..+++|+.|++++|.+++.. +..+++|+.|++++|.+++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence 77777665444444333 3777777777777777778889999999999999998653 5567899999999998865
Q ss_pred ccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccCCCCccccccccc
Q 008628 254 TFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLN 333 (559)
Q Consensus 254 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~ 333 (559)
+...++|++|++++|.+....+.. .++|+.|++++|.+++. .. +.
T Consensus 207 -----l~~~~~L~~L~ls~n~l~~~~~~~-----~~~L~~L~L~~n~l~~~--~~-l~---------------------- 251 (597)
T 3oja_B 207 -----LAIPIAVEELDASHNSINVVRGPV-----NVELTILKLQHNNLTDT--AW-LL---------------------- 251 (597)
T ss_dssp -----EECCTTCSEEECCSSCCCEEECSC-----CSCCCEEECCSSCCCCC--GG-GG----------------------
T ss_pred -----ccCCchhheeeccCCccccccccc-----CCCCCEEECCCCCCCCC--hh-hc----------------------
Confidence 345578999999999987554322 36899999999998863 11 11
Q ss_pred ccceeeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCC
Q 008628 334 YSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSS 413 (559)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 413 (559)
.+++|++|++++|.+.+..|..+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++
T Consensus 252 --------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 252 --------------------NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSH 310 (597)
T ss_dssp --------------------GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCS
T ss_pred --------------------cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCC
Confidence 17889999999999999999999999999999999999996 466678899999999999
Q ss_pred CcCCccCcccccCCCCCCeEeCcCCccccCCCCCCCCCccCCccccCCCCCCCC
Q 008628 414 NKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPEGPQFNTFANDSYSGNSGLCGF 467 (559)
Q Consensus 414 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~ 467 (559)
|.+. .+|..+..+++|+.|++++|++++.. ...+..+..+.+.+|+..|.+
T Consensus 311 N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 311 NHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp SCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred CCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCChh
Confidence 9999 57778899999999999999998653 345678888899999988853
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=4.9e-31 Score=260.25 Aligned_cols=246 Identities=22% Similarity=0.271 Sum_probs=127.1
Q ss_pred ccCEEECCCCCCCCCCcccccCCcEEEccCCcccccCCCCC---CCccEEEeeeccCCcccCccCCCCCCCCEEEcccCc
Q 008628 8 TLYFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLP---PHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNS 84 (559)
Q Consensus 8 ~L~~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~~~~~~~---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 84 (559)
+++.+++++++++.+|....++|++|++++|.+++..+..+ ++|++|++++|.+++..|..|+++++|++|++++|.
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence 45666666666666665555666666666666655444332 255666666666655555556666666666666665
Q ss_pred CccccCccccCcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCC--CCCccCCCCCCccEEEeeCCcCCcccch
Q 008628 85 LSGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEG--PLPPSLINCVKLHFLDVGNNNLSGPIPE 162 (559)
Q Consensus 85 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 162 (559)
+. .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+.++++|++|++++|.++. +|.
T Consensus 112 l~-~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~ 188 (330)
T 1xku_A 112 LK-ELPEKM-PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQ 188 (330)
T ss_dssp CS-BCCSSC-CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCS
T ss_pred CC-ccChhh-cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCc
Confidence 54 333322 2555666666665555555555555566666665555532 334445555555555555555542 232
Q ss_pred hccCCCCCCEEEccCCccccccCcccccCc-cCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCC
Q 008628 163 YLGNSTSLSFLNVRNNSLSGPIPECLGNST-LEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHL 241 (559)
Q Consensus 163 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L 241 (559)
.+. ++|++|++++|.+.+..+..+.... |+.|++++|.+.+..+..+..+++|++|++++|+++ .+|..+..+++|
T Consensus 189 ~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L 265 (330)
T 1xku_A 189 GLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI 265 (330)
T ss_dssp SCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred ccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCc
Confidence 221 4455555555555444343333322 555555555444444444444445555555555444 334444444445
Q ss_pred cEEEeecCccCcccchhh
Q 008628 242 EVIDVGNNQINETFPHWL 259 (559)
Q Consensus 242 ~~L~l~~n~l~~~~~~~~ 259 (559)
++|++++|.+++..+..|
T Consensus 266 ~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 266 QVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CEEECCSSCCCCCCTTSS
T ss_pred CEEECCCCcCCccChhhc
Confidence 555555554444433333
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=3.1e-32 Score=266.17 Aligned_cols=250 Identities=27% Similarity=0.392 Sum_probs=232.4
Q ss_pred CCccEEEeeeccCCc--ccCccCCCCCCCCEEEccc-CcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCE
Q 008628 49 PHMVELLISNNSLTG--EIPSSFCNLSSIQYLNLSN-NSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSY 124 (559)
Q Consensus 49 ~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 124 (559)
.+++.|++++|.+++ .+|..++++++|++|++++ |.+.+.+|..+. +++|++|++++|.+++..|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 589999999999998 8899999999999999995 889888998888 999999999999999899999999999999
Q ss_pred EEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCC-CCCEEEccCCccccccCcccccCccCEEEccCCcC
Q 008628 125 LRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNST-SLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKF 203 (559)
Q Consensus 125 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~ 203 (559)
|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+.+.+|..+....|+.|++++|.+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l 209 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML 209 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcc
Confidence 99999999989999999999999999999999988999999998 99999999999999899988888899999999999
Q ss_pred CCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCC
Q 008628 204 SGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTK 283 (559)
Q Consensus 204 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 283 (559)
++..|..+..+++|+.|++++|.+++..+. +..+++|++|++++|.+++.+|.++..+++|++|++++|++++.+|..
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~- 287 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG- 287 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-
Confidence 989999999999999999999999876665 888999999999999999899999999999999999999999988875
Q ss_pred CCCCCCCceEEEccCccce
Q 008628 284 TRVPFPKLRIIDLSYNRFT 302 (559)
Q Consensus 284 ~~~~l~~L~~L~l~~n~l~ 302 (559)
..+++|+.+++++|+..
T Consensus 288 --~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 288 --GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp --TTGGGSCGGGTCSSSEE
T ss_pred --ccccccChHHhcCCCCc
Confidence 56889999999999843
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=7.2e-31 Score=259.22 Aligned_cols=242 Identities=22% Similarity=0.304 Sum_probs=135.5
Q ss_pred cCCcEEEccCCcccccCCCCCCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCeEeccCC
Q 008628 28 KNLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMN 106 (559)
Q Consensus 28 ~~L~~L~Ls~n~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n 106 (559)
.+++.++++++.+.......+++++.|++++|.+++..+..|.++++|++|++++|.+.+..|..+. +++|++|++++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 3577777777776644334444677777777777666666677777777777777777655555555 666666666666
Q ss_pred cCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCc--ccchhccCCCCCCEEEccCCcccccc
Q 008628 107 NFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSG--PIPEYLGNSTSLSFLNVRNNSLSGPI 184 (559)
Q Consensus 107 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~ 184 (559)
.++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.++. ..+..+..+ +|+.|++++|.+.+ +
T Consensus 113 ~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l 187 (332)
T 2ft3_A 113 HLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-I 187 (332)
T ss_dssp CCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-C
T ss_pred cCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-c
Confidence 665 3333322 566666666666664444455666666666666666542 344445544 55555555555553 2
Q ss_pred CcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCC
Q 008628 185 PECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPE 264 (559)
Q Consensus 185 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 264 (559)
|..+ . ++|++|++++|.+++..+..+..+++|++|++++|.+++..+.++..+++
T Consensus 188 ~~~~-----------------------~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 242 (332)
T 2ft3_A 188 PKDL-----------------------P--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242 (332)
T ss_dssp CSSS-----------------------C--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTT
T ss_pred Cccc-----------------------c--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCC
Confidence 2222 1 34555555555555444455555555555555555555555555555555
Q ss_pred CcEEEcccccccccCCCCCCCCCCCCceEEEccCccce
Q 008628 265 LQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFT 302 (559)
Q Consensus 265 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 302 (559)
|++|++++|++. .+|... ..+++|+.|++++|+++
T Consensus 243 L~~L~L~~N~l~-~lp~~l--~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 243 LRELHLDNNKLS-RVPAGL--PDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp CCEEECCSSCCC-BCCTTG--GGCTTCCEEECCSSCCC
T ss_pred CCEEECCCCcCe-ecChhh--hcCccCCEEECCCCCCC
Confidence 555555555554 222222 33444555555554444
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=2.1e-30 Score=255.72 Aligned_cols=289 Identities=18% Similarity=0.211 Sum_probs=189.6
Q ss_pred ccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEcc
Q 008628 97 TLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVR 176 (559)
Q Consensus 97 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 176 (559)
+++.++++++.++ .+|..+ .+++++|++++|.+.+..+..|.++++|++|++++|.+++..|..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4555555555554 233322 2456666666666665444556666666666666666665556666666666666666
Q ss_pred CCccccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCcccc--CCCccccCCCCCcEEEeecCccCcc
Q 008628 177 NNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEG--PLPPSLVNCRHLEVIDVGNNQINET 254 (559)
Q Consensus 177 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~ 254 (559)
+|.+.. +|..+. .+|+.|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++..
T Consensus 109 ~n~l~~-l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 109 KNQLKE-LPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp SSCCSB-CCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred CCcCCc-cChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 666653 333332 457777777777776666777778888888888887753 5566777778888888888877653
Q ss_pred cchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccCCCCcccccccccc
Q 008628 255 FPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNY 334 (559)
Q Consensus 255 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~ 334 (559)
.. .+ .++|++|++++|++.+..+..+ ..+++|+.|++++|.+++..+..+.
T Consensus 187 ~~-~~--~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~------------------------ 237 (330)
T 1xku_A 187 PQ-GL--PPSLTELHLDGNKITKVDAASL--KGLNNLAKLGLSFNSISAVDNGSLA------------------------ 237 (330)
T ss_dssp CS-SC--CTTCSEEECTTSCCCEECTGGG--TTCTTCCEEECCSSCCCEECTTTGG------------------------
T ss_pred Cc-cc--cccCCEEECCCCcCCccCHHHh--cCCCCCCEEECCCCcCceeChhhcc------------------------
Confidence 32 22 2677777777777766544433 5567777777777777665442211
Q ss_pred cceeeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccC------CCCCCE
Q 008628 335 SYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRN------LTELES 408 (559)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~ 408 (559)
.+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|.. .+.|+.
T Consensus 238 -------------------~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~ 297 (330)
T 1xku_A 238 -------------------NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 297 (330)
T ss_dssp -------------------GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSE
T ss_pred -------------------CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccc
Confidence 1567788888888877 56667778888888888888888776666643 367788
Q ss_pred EeCCCCcCCc--cCcccccCCCCCCeEeCcCCc
Q 008628 409 LDLSSNKLAG--RIPTQLASLNYLSVLNLSNNQ 439 (559)
Q Consensus 409 L~Ls~n~l~~--~~p~~l~~l~~L~~L~l~~n~ 439 (559)
|++++|++.. ..|..|..+.+++.+++++|+
T Consensus 298 l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 298 VSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp EECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred eEeecCcccccccCccccccccceeEEEecccC
Confidence 8888888764 556778888888888888774
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=7.8e-31 Score=258.96 Aligned_cols=286 Identities=22% Similarity=0.214 Sum_probs=233.5
Q ss_pred ccCEEECCCCCCCCCCcccccCCcEEEccCCcccccCCCCCC---CccEEEeeeccCCcccCccCCCCCCCCEEEcccCc
Q 008628 8 TLYFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLPP---HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNS 84 (559)
Q Consensus 8 ~L~~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~~~~~~~~---~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 84 (559)
+++.+++++++++.+|...+++|++|++++|.+.+..+..+. +|++|++++|.+++..|..|+++++|++|++++|.
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 113 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence 699999999999999999899999999999999987765544 89999999999998889999999999999999999
Q ss_pred CccccCccccCcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCC--CCCccCCCCCCccEEEeeCCcCCcccch
Q 008628 85 LSGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEG--PLPPSLINCVKLHFLDVGNNNLSGPIPE 162 (559)
Q Consensus 85 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 162 (559)
+. .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+ +|++|++++|.+++ +|.
T Consensus 114 l~-~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~ 189 (332)
T 2ft3_A 114 LV-EIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPK 189 (332)
T ss_dssp CC-SCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCS
T ss_pred CC-ccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCc
Confidence 98 5665544 899999999999998888889999999999999999863 677788888 99999999999985 555
Q ss_pred hccCCCCCCEEEccCCccccccCcccccCc-cCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCC
Q 008628 163 YLGNSTSLSFLNVRNNSLSGPIPECLGNST-LEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHL 241 (559)
Q Consensus 163 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L 241 (559)
.+. ++|++|++++|.+.+..+..+.... |+.|++++|.+.+..+..+..+++|++|++++|+++ .+|..+..+++|
T Consensus 190 ~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L 266 (332)
T 2ft3_A 190 DLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLL 266 (332)
T ss_dssp SSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTC
T ss_pred ccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccC
Confidence 443 7899999999999987766665544 888899988888777778888888888888888888 667778888888
Q ss_pred cEEEeecCccCcccchhhcC------CCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCcc
Q 008628 242 EVIDVGNNQINETFPHWLDV------LPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNR 300 (559)
Q Consensus 242 ~~L~l~~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 300 (559)
++|++++|.+++..+..+.. ...|+.|++++|++.........+..+++|+.+++++|+
T Consensus 267 ~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 267 QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 88888888888776666654 356778888888765211112223557777777777664
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.1e-34 Score=296.92 Aligned_cols=354 Identities=20% Similarity=0.165 Sum_probs=239.5
Q ss_pred CccEEEeeeccCCc----ccCccCCCCCCCCEEEcccCcCccccCcccc--Cc----ccCeEeccCCcCCC----ccchh
Q 008628 50 HMVELLISNNSLTG----EIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG--NS----TLETLDLRMNNFQG----TIPQT 115 (559)
Q Consensus 50 ~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~--~~----~L~~L~L~~n~~~~----~~~~~ 115 (559)
+|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..+. +. +|++|++++|.++. .++..
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 108 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 108 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH
Confidence 55555565555553 3355666778888888888877654333332 33 68888888888774 44777
Q ss_pred hcCCCCCCEEEcccCcCCCCCCcc-----CCCCCCccEEEeeCCcCCccc----chhccCCCCCCEEEccCCccccccCc
Q 008628 116 YAKGCNLSYLRLSGNHLEGPLPPS-----LINCVKLHFLDVGNNNLSGPI----PEYLGNSTSLSFLNVRNNSLSGPIPE 186 (559)
Q Consensus 116 ~~~l~~L~~L~L~~n~~~~~~~~~-----l~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~ 186 (559)
+..+++|++|++++|.+.+..+.. ....++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+.
T Consensus 109 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 188 (461)
T 1z7x_W 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR 188 (461)
T ss_dssp TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHH
Confidence 788888888888888776432222 223567888888888887643 55666778888888888887654333
Q ss_pred ccc------cCccCEEEccCCcCCCC----cchhhcCCCCccEEEccCCccccCC-----CccccCCCCCcEEEeecCcc
Q 008628 187 CLG------NSTLEILDMRMNKFSGS----LPQTFAKSCVLVSLNLNGNRLEGPL-----PPSLVNCRHLEVIDVGNNQI 251 (559)
Q Consensus 187 ~~~------~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~n~~~~~~-----~~~l~~l~~L~~L~l~~n~l 251 (559)
.+. ...|+.|++++|.+++. ++..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+
T Consensus 189 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l 268 (461)
T 1z7x_W 189 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268 (461)
T ss_dssp HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 332 23588888888888763 5677778889999999998877532 22333578899999999988
Q ss_pred Ccc----cchhhcCCCCCcEEEcccccccccCCCCC---CCCCCCCceEEEccCccceeecChHhhhcccccccccCCCC
Q 008628 252 NET----FPHWLDVLPELQVLTLRSNRFRGPIGDTK---TRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNST 324 (559)
Q Consensus 252 ~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~ 324 (559)
++. ++..+..+++|++|++++|.+.+..+... .....++|++|++++|.+++.....+..
T Consensus 269 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~------------- 335 (461)
T 1z7x_W 269 TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS------------- 335 (461)
T ss_dssp CHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH-------------
T ss_pred CHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH-------------
Confidence 764 56667778889999999888754321111 0122368888888888877542222111
Q ss_pred cccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhhc-----CCCCCEEEccCCcCCC----C
Q 008628 325 EVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGK-----LNSLKSLNISHNNLTG----G 395 (559)
Q Consensus 325 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~l~~----~ 395 (559)
....+++|++|++++|.+++..+..+.. .++|++|+|++|.+++ .
T Consensus 336 --------------------------~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 389 (461)
T 1z7x_W 336 --------------------------VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS 389 (461)
T ss_dssp --------------------------HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred --------------------------HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHH
Confidence 1122578888888888887766555543 6688888888888875 6
Q ss_pred CCccccCCCCCCEEeCCCCcCCccCccc----c-cCCCCCCeEeCcCCcccc
Q 008628 396 IPSSLRNLTELESLDLSSNKLAGRIPTQ----L-ASLNYLSVLNLSNNQLEG 442 (559)
Q Consensus 396 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~----l-~~l~~L~~L~l~~n~l~~ 442 (559)
+|..+..+++|++|++++|++.+..... + .....|+.|++.++.+..
T Consensus 390 l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred HHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 6777778888888888888887532211 1 123467777777766554
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=7.3e-34 Score=294.16 Aligned_cols=355 Identities=20% Similarity=0.191 Sum_probs=268.4
Q ss_pred CCccEEEeeeccCCcccCcc-CCCCCCCCEEEcccCcCcc----ccCcccc-CcccCeEeccCCcCCCccchhh-cCCC-
Q 008628 49 PHMVELLISNNSLTGEIPSS-FCNLSSIQYLNLSNNSLSG----QIPQCLG-NSTLETLDLRMNNFQGTIPQTY-AKGC- 120 (559)
Q Consensus 49 ~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~~~~----~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~-~~l~- 120 (559)
+++++|++++|.++...... +..+++|++|++++|.+.. .++..+. +++|++|++++|.+.+..+..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46888999988887544433 6788999999999999874 3455555 7999999999999876555444 3455
Q ss_pred ---CCCEEEcccCcCCC----CCCccCCCCCCccEEEeeCCcCCcccchhcc-----CCCCCCEEEccCCcccccc----
Q 008628 121 ---NLSYLRLSGNHLEG----PLPPSLINCVKLHFLDVGNNNLSGPIPEYLG-----NSTSLSFLNVRNNSLSGPI---- 184 (559)
Q Consensus 121 ---~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~---- 184 (559)
+|++|++++|.+.. .++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+.+..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 69999999999884 4577889999999999999998755444332 3568999999999988643
Q ss_pred Cccccc-CccCEEEccCCcCCCCcchhhc-----CCCCccEEEccCCccccC----CCccccCCCCCcEEEeecCccCcc
Q 008628 185 PECLGN-STLEILDMRMNKFSGSLPQTFA-----KSCVLVSLNLNGNRLEGP----LPPSLVNCRHLEVIDVGNNQINET 254 (559)
Q Consensus 185 ~~~~~~-~~L~~L~l~~n~~~~~~~~~~~-----~~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~ 254 (559)
+..+.. .+|+.|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 333332 4599999999988754444443 356899999999988864 466777889999999999988764
Q ss_pred c-----chhhcCCCCCcEEEccccccccc----CCCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccCCCCc
Q 008628 255 F-----PHWLDVLPELQVLTLRSNRFRGP----IGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTE 325 (559)
Q Consensus 255 ~-----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~ 325 (559)
. +..+..+++|++|++++|.+++. ++.. ...+++|++|++++|.+.+..+..+...+.
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~--l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~----------- 309 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV--LRAKESLKELSLAGNELGDEGARLLCETLL----------- 309 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH--HHHCTTCCEEECTTCCCHHHHHHHHHHHHT-----------
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH--HhhCCCcceEECCCCCCchHHHHHHHHHhc-----------
Confidence 3 23334688999999999988653 2222 134788999999999886543322221110
Q ss_pred ccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccccc----cchhhhcCCCCCEEEccCCcCCCCCCcccc
Q 008628 326 VNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGE----ISQVLGKLNSLKSLNISHNNLTGGIPSSLR 401 (559)
Q Consensus 326 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 401 (559)
...++|++|++++|.+++. ++..+..+++|++|+|++|.+++..+..+.
T Consensus 310 ---------------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 362 (461)
T 1z7x_W 310 ---------------------------EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362 (461)
T ss_dssp ---------------------------STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHH
T ss_pred ---------------------------cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHH
Confidence 0036899999999999876 466677889999999999999876555554
Q ss_pred C-----CCCCCEEeCCCCcCCc----cCcccccCCCCCCeEeCcCCccccC
Q 008628 402 N-----LTELESLDLSSNKLAG----RIPTQLASLNYLSVLNLSNNQLEGP 443 (559)
Q Consensus 402 ~-----l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~~~ 443 (559)
. .++|++|++++|.+++ .+|..+..+++|++|++++|++++.
T Consensus 363 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 3 6799999999999996 7788899999999999999998753
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=6.3e-29 Score=247.48 Aligned_cols=277 Identities=20% Similarity=0.180 Sum_probs=209.4
Q ss_pred cCCcEEEccCCcccccCCCCCCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCeEeccCC
Q 008628 28 KNLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMN 106 (559)
Q Consensus 28 ~~L~~L~Ls~n~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n 106 (559)
+.....|++++.++......+.+|++|++++|.+++..+..|.++++|++|++++|.+.+..+..+. +++|++|++++|
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 4445567777776654444445777777777777766666778888888888888888766666666 788888888888
Q ss_pred cCCCccchhhcCCCCCCEEEcccCcCCCCCC-ccCCCCCCccEEEeeCC-cCCcccchhccCCCCCCEEEccCCcccccc
Q 008628 107 NFQGTIPQTYAKGCNLSYLRLSGNHLEGPLP-PSLINCVKLHFLDVGNN-NLSGPIPEYLGNSTSLSFLNVRNNSLSGPI 184 (559)
Q Consensus 107 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 184 (559)
.+++..+..++.+++|++|++++|.+.+..+ ..+.++++|++|++++| .+....+..+..+++|++|++++|.+.+..
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence 8886666668888888888888888874333 36788888888888888 466555677888888888888888888777
Q ss_pred CcccccCc-cCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCcccc---CCCCCcEEEeecCccCc----ccc
Q 008628 185 PECLGNST-LEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLV---NCRHLEVIDVGNNQINE----TFP 256 (559)
Q Consensus 185 ~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~---~l~~L~~L~l~~n~l~~----~~~ 256 (559)
|..+.... |+.|++++|.+....+..+..+++|+.|++++|.+++..+..+. ....++.++++++.+++ .+|
T Consensus 191 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~ 270 (353)
T 2z80_A 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM 270 (353)
T ss_dssp TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred HHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhH
Confidence 77776655 88888888888644444455688999999999998876554433 45678899999998876 367
Q ss_pred hhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecC
Q 008628 257 HWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLP 306 (559)
Q Consensus 257 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 306 (559)
.++..+++|++|++++|++.. ++... +..+++|++|++++|++.+..|
T Consensus 271 ~~l~~l~~L~~L~Ls~N~l~~-i~~~~-~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 271 KLLNQISGLLELEFSRNQLKS-VPDGI-FDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHTCTTCCEEECCSSCCCC-CCTTT-TTTCTTCCEEECCSSCBCCCHH
T ss_pred HHHhcccCCCEEECCCCCCCc-cCHHH-HhcCCCCCEEEeeCCCccCcCC
Confidence 788999999999999999984 33321 2678999999999999998765
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=5.3e-28 Score=240.80 Aligned_cols=273 Identities=18% Similarity=0.161 Sum_probs=231.3
Q ss_pred CCccCEEECCCCCCCCCCcccccCCcEEEccCCcccccCCCCC---CCccEEEeeeccCCcccCccCCCCCCCCEEEccc
Q 008628 6 VHTLYFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLP---PHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSN 82 (559)
Q Consensus 6 l~~L~~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~~~~~~~---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 82 (559)
|+.....|+++++++++|...+++|++|++++|.+++..+..+ ++|+.|++++|.+++..+..|+++++|++|++++
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 4556679999999999999999999999999999998766444 4999999999999988888999999999999999
Q ss_pred CcCccccCcccc-CcccCeEeccCCcCCCccc-hhhcCCCCCCEEEcccCc-CCCCCCccCCCCCCccEEEeeCCcCCcc
Q 008628 83 NSLSGQIPQCLG-NSTLETLDLRMNNFQGTIP-QTYAKGCNLSYLRLSGNH-LEGPLPPSLINCVKLHFLDVGNNNLSGP 159 (559)
Q Consensus 83 n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 159 (559)
|.+.+..+..+. +++|++|++++|.+++..+ ..+..+++|++|++++|. +....+..+.++++|++|++++|.+.+.
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 999855445466 9999999999999996554 578999999999999994 6666678899999999999999999988
Q ss_pred cchhccCCCCCCEEEccCCccccccCcccc-cCccCEEEccCCcCCCCcchhhc---CCCCccEEEccCCcccc----CC
Q 008628 160 IPEYLGNSTSLSFLNVRNNSLSGPIPECLG-NSTLEILDMRMNKFSGSLPQTFA---KSCVLVSLNLNGNRLEG----PL 231 (559)
Q Consensus 160 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~---~~~~L~~L~L~~n~~~~----~~ 231 (559)
.|..+..+++|++|++++|.+....+..+. ..+|+.|++++|.+++..+..+. ....++.++++++.+.+ .+
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 899999999999999999998754333333 34599999999999875544333 45678889999988775 35
Q ss_pred CccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEccccccccc
Q 008628 232 PPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGP 278 (559)
Q Consensus 232 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 278 (559)
|..+..+++|++|++++|.++...+..+..+++|++|++++|++.+.
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred HHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 67789999999999999999976666678999999999999998754
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3.9e-28 Score=236.84 Aligned_cols=232 Identities=22% Similarity=0.263 Sum_probs=145.3
Q ss_pred CccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccc--cCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEE
Q 008628 50 HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQ--IPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLR 126 (559)
Q Consensus 50 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 126 (559)
++++|++++|.++...+..|+++++|++|++++|.+... .+..+. +++|++|++++|.+. .+|..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEE
Confidence 444455555555533344466777777777777776532 133333 677777777777766 3455566777777777
Q ss_pred cccCcCCCCCC-ccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCC
Q 008628 127 LSGNHLEGPLP-PSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSG 205 (559)
Q Consensus 127 L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~ 205 (559)
+++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------- 165 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN---------------------- 165 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG----------------------
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc----------------------
Confidence 77777664433 4566777777777777777666666666677777777766666531
Q ss_pred CcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCC
Q 008628 206 SLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTR 285 (559)
Q Consensus 206 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 285 (559)
..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+...
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-- 243 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL-- 243 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC--
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH--
Confidence 233444555566666666666665556666666666666666666666655566666777777777777666555443
Q ss_pred CCC-CCceEEEccCccceeecC
Q 008628 286 VPF-PKLRIIDLSYNRFTGVLP 306 (559)
Q Consensus 286 ~~l-~~L~~L~l~~n~l~~~~~ 306 (559)
..+ ++|++|++++|++++..+
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCCCTTCCEEECTTCCEECSGG
T ss_pred HhhhccCCEEEccCCCeecccC
Confidence 344 377777777777775533
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=4.8e-27 Score=241.89 Aligned_cols=92 Identities=23% Similarity=0.280 Sum_probs=81.6
Q ss_pred hccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEe
Q 008628 355 LTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN 434 (559)
Q Consensus 355 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 434 (559)
+++|++|++++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+
T Consensus 217 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296 (452)
T ss_dssp CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEE
T ss_pred cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEE
Confidence 56788888888888888888899999999999999999988888999999999999999999988888888999999999
Q ss_pred CcCCccccCCCC
Q 008628 435 LSNNQLEGPIPE 446 (559)
Q Consensus 435 l~~n~l~~~~p~ 446 (559)
+++|++.|.|.-
T Consensus 297 L~~Np~~CdC~~ 308 (452)
T 3zyi_A 297 LHHNPWNCDCDI 308 (452)
T ss_dssp CCSSCEECSTTT
T ss_pred ccCCCcCCCCCc
Confidence 999999988853
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.5e-27 Score=232.60 Aligned_cols=91 Identities=27% Similarity=0.350 Sum_probs=75.0
Q ss_pred hccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCC-CCCeE
Q 008628 355 LTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLN-YLSVL 433 (559)
Q Consensus 355 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L 433 (559)
+++|++|++++|.+++..|..+..+++|++|+|++|.+++..+..+..+++|++|++++|.+.+..|..+..++ +|++|
T Consensus 174 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L 253 (306)
T 2z66_A 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253 (306)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEE
T ss_pred CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEE
Confidence 55677777777777777777788888888888888888877777888888899999999988888888888884 89999
Q ss_pred eCcCCccccCCC
Q 008628 434 NLSNNQLEGPIP 445 (559)
Q Consensus 434 ~l~~n~l~~~~p 445 (559)
++++|+++|.++
T Consensus 254 ~L~~N~~~~~c~ 265 (306)
T 2z66_A 254 NLTQNDFACTCE 265 (306)
T ss_dssp ECTTCCEECSGG
T ss_pred EccCCCeecccC
Confidence 999999888765
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=3.8e-27 Score=241.77 Aligned_cols=92 Identities=20% Similarity=0.208 Sum_probs=83.4
Q ss_pred hccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEe
Q 008628 355 LTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN 434 (559)
Q Consensus 355 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 434 (559)
+++|++|++++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+
T Consensus 206 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 285 (440)
T 3zyj_A 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH 285 (440)
T ss_dssp CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEE
T ss_pred CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEE
Confidence 66788888888888888888899999999999999999999899999999999999999999988888899999999999
Q ss_pred CcCCccccCCCC
Q 008628 435 LSNNQLEGPIPE 446 (559)
Q Consensus 435 l~~n~l~~~~p~ 446 (559)
+++|++.|.|.-
T Consensus 286 L~~Np~~CdC~l 297 (440)
T 3zyj_A 286 LHHNPWNCNCDI 297 (440)
T ss_dssp CCSSCEECSSTT
T ss_pred cCCCCccCCCCc
Confidence 999999998853
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3e-27 Score=243.44 Aligned_cols=245 Identities=19% Similarity=0.166 Sum_probs=158.1
Q ss_pred CCcEEEccCCcccccCCCCCCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCeEeccCCc
Q 008628 29 NLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMNN 107 (559)
Q Consensus 29 ~L~~L~Ls~n~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n~ 107 (559)
..+.++.++..++......+.+++.|+|++|.+++..+..|.++++|++|+|++|.+.+..+..+. +++|++|+|++|.
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 456777777777754444555788888888888877777888888888888888888766666666 7888888888888
Q ss_pred CCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCC-cCCcccchhccCCCCCCEEEccCCccccccCc
Q 008628 108 FQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNN-NLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPE 186 (559)
Q Consensus 108 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 186 (559)
++...+..|..+++|++|++++|.+....+..|.++++|++|++++| .+....+..|..+++|++|++++|.+.+ +|.
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~ 213 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN 213 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCC
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-ccc
Confidence 88766677788888888888888887655567778888888888874 4443334457777778888887777764 333
Q ss_pred ccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCc
Q 008628 187 CLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQ 266 (559)
Q Consensus 187 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 266 (559)
.....+|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence 32333355555555555544455555555555555555555544444455555555555555554444444444444444
Q ss_pred EEEccccc
Q 008628 267 VLTLRSNR 274 (559)
Q Consensus 267 ~L~L~~n~ 274 (559)
+|++++|+
T Consensus 294 ~L~L~~Np 301 (452)
T 3zyi_A 294 ELHLHHNP 301 (452)
T ss_dssp EEECCSSC
T ss_pred EEEccCCC
Confidence 44444443
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=3.6e-27 Score=241.90 Aligned_cols=246 Identities=20% Similarity=0.176 Sum_probs=152.4
Q ss_pred cCCcEEEccCCcccccCCCCCCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCeEeccCC
Q 008628 28 KNLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMN 106 (559)
Q Consensus 28 ~~L~~L~Ls~n~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n 106 (559)
...+.++.++..++......+.+++.|+|++|.+++..+..|.++++|++|+|++|.+....+..+. +++|++|+|++|
T Consensus 43 ~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 43 NQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp TTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 3456777777777755444555778888888888777777788888888888888888766656666 778888888888
Q ss_pred cCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCC-cCCcccchhccCCCCCCEEEccCCccccccC
Q 008628 107 NFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNN-NLSGPIPEYLGNSTSLSFLNVRNNSLSGPIP 185 (559)
Q Consensus 107 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 185 (559)
.++...+..|..+++|++|++++|.+....+..|.++++|++|++++| .+....+..|..+++|++|++++|.+.. +|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc
Confidence 877666667777888888888888777655667777888888888774 3443333467777777777777777663 33
Q ss_pred cccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCC
Q 008628 186 ECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPEL 265 (559)
Q Consensus 186 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 265 (559)
......+|+.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|
T Consensus 202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 32222334444444444444444444444444444444444444444444444444444444444444444334444444
Q ss_pred cEEEccccc
Q 008628 266 QVLTLRSNR 274 (559)
Q Consensus 266 ~~L~L~~n~ 274 (559)
++|++++|+
T Consensus 282 ~~L~L~~Np 290 (440)
T 3zyj_A 282 ERIHLHHNP 290 (440)
T ss_dssp CEEECCSSC
T ss_pred CEEEcCCCC
Confidence 444444443
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.5e-27 Score=230.10 Aligned_cols=219 Identities=21% Similarity=0.165 Sum_probs=129.3
Q ss_pred CEEECCCCCCCCCCcccccCCcEEEccCCcccccCCCCCC---CccEEEeeeccCCcccCccCCCCCCCCEEEcccCc-C
Q 008628 10 YFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLPP---HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNS-L 85 (559)
Q Consensus 10 ~~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~~~~~~~~---~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-~ 85 (559)
+.+++++++++.+|....++|++|++++|.+.+..+..+. +|++|++++|.+++..+..|.++++|++|++++|. +
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence 5677888888777777777777777777777765544332 66666666666666556666666666666666665 5
Q ss_pred ccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhc
Q 008628 86 SGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYL 164 (559)
Q Consensus 86 ~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 164 (559)
....+..+. +++|++|++++|.+++..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 173 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHh
Confidence 433344454 6666666666666665555666666666666666666664444455666666666666666654444455
Q ss_pred cCCCCCCEEEccCCccccccCcccccCc-cCEEEccCCcCCCCcchhhcCCCCccEEEccCCccc
Q 008628 165 GNSTSLSFLNVRNNSLSGPIPECLGNST-LEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLE 228 (559)
Q Consensus 165 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~ 228 (559)
..+++|+.|++++|.+.+..|..+.... |+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 5566666666666555544444433322 444444444444433344444444444444444443
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=6e-28 Score=232.87 Aligned_cols=224 Identities=21% Similarity=0.198 Sum_probs=155.5
Q ss_pred CcEEEccCCcccccCCCCCCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCeEeccCCc-
Q 008628 30 LEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMNN- 107 (559)
Q Consensus 30 L~~L~Ls~n~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n~- 107 (559)
-++++++++.++......++++++|++++|.+++..+..|.++++|++|++++|.+.+..+..+. +++|++|++++|.
T Consensus 13 ~~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp SCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred CeEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 36788888888765445556888888888888877777788888888888888888766666666 7888888888886
Q ss_pred CCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCcc
Q 008628 108 FQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPEC 187 (559)
Q Consensus 108 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 187 (559)
+....|..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~- 171 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER- 171 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT-
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH-
Confidence 6666677777788888888888887766677777778888888888877766666677777777777777766643333
Q ss_pred cccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcE
Q 008628 188 LGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQV 267 (559)
Q Consensus 188 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 267 (559)
.+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 172 ----------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 229 (285)
T 1ozn_A 172 ----------------------AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY 229 (285)
T ss_dssp ----------------------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred ----------------------HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCE
Confidence 3444455555555555555555555555555555555555555555555555556666
Q ss_pred EEccccccc
Q 008628 268 LTLRSNRFR 276 (559)
Q Consensus 268 L~L~~n~l~ 276 (559)
|++++|++.
T Consensus 230 L~l~~N~~~ 238 (285)
T 1ozn_A 230 LRLNDNPWV 238 (285)
T ss_dssp EECCSSCEE
T ss_pred EeccCCCcc
Confidence 666665554
No 59
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=6.7e-27 Score=229.68 Aligned_cols=223 Identities=24% Similarity=0.291 Sum_probs=174.1
Q ss_pred CCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEc
Q 008628 49 PHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRL 127 (559)
Q Consensus 49 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 127 (559)
.+++.|+|++|.++ .+|..+.++++|++|++++|.+. .+|..+. +++|++|++++|.++ .+|..++.+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 47888888888888 66777788888999999888887 7777777 888888888888888 66888888888999999
Q ss_pred ccCcCCCCCCccCCC---------CCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCcccccCccCEEEc
Q 008628 128 SGNHLEGPLPPSLIN---------CVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDM 198 (559)
Q Consensus 128 ~~n~~~~~~~~~l~~---------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l 198 (559)
++|.+.+.+|..+.. +++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+......+|+.|++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence 888877788877654 888888888888887 6677788888888888888888754333222334777777
Q ss_pred cCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccc
Q 008628 199 RMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRF 275 (559)
Q Consensus 199 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 275 (559)
++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|+.+++..+.+
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777776654
No 60
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.4e-29 Score=270.46 Aligned_cols=90 Identities=10% Similarity=0.072 Sum_probs=69.0
Q ss_pred hhccccEEEcCCcc--cccccchhhh-cCCCCCEEEccCCcCCCC-CCccccCCCCCCEEeCCCCcCCcc-CcccccCCC
Q 008628 354 ILTTFATIDLSSNR--FQGEISQVLG-KLNSLKSLNISHNNLTGG-IPSSLRNLTELESLDLSSNKLAGR-IPTQLASLN 428 (559)
Q Consensus 354 ~l~~L~~L~ls~n~--l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~ 428 (559)
.+++|++|++++|. +++..+..+. .+++|++|+|++|++++. ++..+..+++|++|++++|.+++. ++.....++
T Consensus 434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~ 513 (592)
T 3ogk_B 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLP 513 (592)
T ss_dssp HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCS
T ss_pred hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcC
Confidence 37889999997644 6665555554 488999999999998863 445567889999999999998654 444556789
Q ss_pred CCCeEeCcCCccccC
Q 008628 429 YLSVLNLSNNQLEGP 443 (559)
Q Consensus 429 ~L~~L~l~~n~l~~~ 443 (559)
+|++|++++|+++..
T Consensus 514 ~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 514 SLRYLWVQGYRASMT 528 (592)
T ss_dssp SCCEEEEESCBCCTT
T ss_pred ccCeeECcCCcCCHH
Confidence 999999999997754
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.9e-28 Score=240.00 Aligned_cols=264 Identities=20% Similarity=0.204 Sum_probs=166.4
Q ss_pred eEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCc
Q 008628 100 TLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNS 179 (559)
Q Consensus 100 ~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 179 (559)
..+++.+.+....+..+..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence 33444444443333444445556666666666655444555666666666666666554433 5566666666666666
Q ss_pred cccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhh
Q 008628 180 LSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWL 259 (559)
Q Consensus 180 l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 259 (559)
+.+..+ ...|+.|++++|.+.+..+. .+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+
T Consensus 92 l~~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 92 VQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp EEEEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred cccccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence 553221 13466666666655543332 24567777777777766656666666777777777777666555444
Q ss_pred -cCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccCCCCccccccccccccee
Q 008628 260 -DVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYE 338 (559)
Q Consensus 260 -~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~ 338 (559)
..+++|++|++++|.+.+..... .
T Consensus 165 ~~~l~~L~~L~L~~N~l~~~~~~~----~--------------------------------------------------- 189 (317)
T 3o53_A 165 AASSDTLEHLNLQYNFIYDVKGQV----V--------------------------------------------------- 189 (317)
T ss_dssp GGGTTTCCEEECTTSCCCEEECCC----C---------------------------------------------------
T ss_pred hhccCcCCEEECCCCcCccccccc----c---------------------------------------------------
Confidence 24555555555555544221100 0
Q ss_pred eeEEeecCchhhHHHhhccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCC-
Q 008628 339 SISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA- 417 (559)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~- 417 (559)
+++|++|++++|.+++..+ .+..+++|++|+|++|+++ .+|..+..+++|+.|++++|++.
T Consensus 190 ----------------l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 190 ----------------FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp ----------------CTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBH
T ss_pred ----------------cccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccC
Confidence 4567777777777775443 4788899999999999998 46777888999999999999998
Q ss_pred ccCcccccCCCCCCeEeCcCC-ccccCCC
Q 008628 418 GRIPTQLASLNYLSVLNLSNN-QLEGPIP 445 (559)
Q Consensus 418 ~~~p~~l~~l~~L~~L~l~~n-~l~~~~p 445 (559)
+.+|..+..+++|+.+++++| .+.+..|
T Consensus 252 ~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred cCHHHHHhccccceEEECCCchhccCCch
Confidence 677888899999999999844 5555443
No 62
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=6.3e-29 Score=265.50 Aligned_cols=417 Identities=13% Similarity=0.075 Sum_probs=280.0
Q ss_pred cCCCccCEEECCCCCC----CCCCcc--------------cccCCcEEEccCCcccccCCCC----CC-CccEEEeeecc
Q 008628 4 IGVHTLYFLDLSRNFL----TSIDHL--------------PWKNLEYLTLDSNLLQGSLPDL----PP-HMVELLISNNS 60 (559)
Q Consensus 4 ~~l~~L~~L~ls~n~~----~~i~~~--------------~~~~L~~L~Ls~n~~~~~~~~~----~~-~L~~L~L~~n~ 60 (559)
..+++|++|+++++.. ..+|.. ..++|++|+|++|.+.+..+.. ++ +|++|++++|.
T Consensus 70 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~ 149 (592)
T 3ogk_B 70 RRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS 149 (592)
T ss_dssp HHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE
T ss_pred HhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC
Confidence 3578899999988532 122211 1289999999999887643322 23 49999999886
Q ss_pred -CCc-ccCccCCCCCCCCEEEcccCcCccc----cCcccc-CcccCeEeccCCcCC----CccchhhcCCCCCCEEEccc
Q 008628 61 -LTG-EIPSSFCNLSSIQYLNLSNNSLSGQ----IPQCLG-NSTLETLDLRMNNFQ----GTIPQTYAKGCNLSYLRLSG 129 (559)
Q Consensus 61 -i~~-~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~-~~~L~~L~L~~n~~~----~~~~~~~~~l~~L~~L~L~~ 129 (559)
++. ..+....++++|++|++++|.+.+. ++.... +++|++|++++|.++ +.++..+.++++|++|++++
T Consensus 150 ~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~ 229 (592)
T 3ogk_B 150 GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD 229 (592)
T ss_dssp EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS
T ss_pred CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC
Confidence 221 1222234789999999999987654 333344 899999999999987 34556667889999999999
Q ss_pred CcCCCCCCccCCCCCCccEEEeeCCcCC---cccchhccCCCCCCEEEccCCccccccCcccccC-ccCEEEccCCcCCC
Q 008628 130 NHLEGPLPPSLINCVKLHFLDVGNNNLS---GPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNS-TLEILDMRMNKFSG 205 (559)
Q Consensus 130 n~~~~~~~~~l~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~ 205 (559)
|.+.+ ++..+.++++|++|+++..... ...+..+..+++|+.|++.++... .+|..+... +|+.|++++|.+++
T Consensus 230 ~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~ 307 (592)
T 3ogk_B 230 FEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLET 307 (592)
T ss_dssp CBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCH
T ss_pred ccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCH
Confidence 98874 6778888999999999864322 233356677889999998876433 455555443 49999999998764
Q ss_pred Ccc-hhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeec-----------CccCcc-cchhhcCCCCCcEEEccc
Q 008628 206 SLP-QTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGN-----------NQINET-FPHWLDVLPELQVLTLRS 272 (559)
Q Consensus 206 ~~~-~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~-----------n~l~~~-~~~~~~~l~~L~~L~L~~ 272 (559)
... ..+..+++|++|+++++...+..+.....+++|++|++++ +.+++. +......+++|++|+++.
T Consensus 308 ~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 387 (592)
T 3ogk_B 308 EDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV 387 (592)
T ss_dssp HHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE
T ss_pred HHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec
Confidence 433 4467889999999984322223333446788899999993 466543 233345688999999988
Q ss_pred ccccccCCCCCCCCCCCCceEEEcc----CccceeecC----hHhhhcccccccccCCCCcccccccccccceeeeEEee
Q 008628 273 NRFRGPIGDTKTRVPFPKLRIIDLS----YNRFTGVLP----IWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTM 344 (559)
Q Consensus 273 n~l~~~~~~~~~~~~l~~L~~L~l~----~n~l~~~~~----~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 344 (559)
|.+++...... ...+++|+.|+++ .|.+++... ...+.+++.|+.++...+.- .+
T Consensus 388 ~~l~~~~~~~l-~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~-~l--------------- 450 (592)
T 3ogk_B 388 SDITNESLESI-GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG-GL--------------- 450 (592)
T ss_dssp SCCCHHHHHHH-HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGG-GC---------------
T ss_pred CCccHHHHHHH-HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCC-Cc---------------
Confidence 87765433222 1237889999996 556665311 12244556665554422110 00
Q ss_pred cCchhh-HHHhhccccEEEcCCcccccc-cchhhhcCCCCCEEEccCCcCCCC-CCccccCCCCCCEEeCCCCcCCccCc
Q 008628 345 KGNNIQ-MERILTTFATIDLSSNRFQGE-ISQVLGKLNSLKSLNISHNNLTGG-IPSSLRNLTELESLDLSSNKLAGRIP 421 (559)
Q Consensus 345 ~~~~~~-~~~~l~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p 421 (559)
...... ....+++|++|++++|.+++. ++..+.++++|++|+|++|.+++. ++..+..+++|++|++++|+++....
T Consensus 451 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~ 530 (592)
T 3ogk_B 451 TDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQ 530 (592)
T ss_dssp CHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCT
T ss_pred cHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHH
Confidence 000111 122378899999999999874 455568899999999999998755 34445678999999999999886533
Q ss_pred ccc-cCCCCCCeEeCcCCc
Q 008628 422 TQL-ASLNYLSVLNLSNNQ 439 (559)
Q Consensus 422 ~~l-~~l~~L~~L~l~~n~ 439 (559)
..+ ..++.++...+..++
T Consensus 531 ~~l~~~~p~l~~~~~~~~~ 549 (592)
T 3ogk_B 531 DLMQMARPYWNIELIPSRR 549 (592)
T ss_dssp TGGGGCCTTEEEEEECCC-
T ss_pred HHHHHhCCCcEEEEecCcc
Confidence 333 456777766665543
No 63
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=3.7e-26 Score=224.36 Aligned_cols=220 Identities=24% Similarity=0.297 Sum_probs=165.0
Q ss_pred cCCcEEEccCCcccccCCCCC---CCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCeEec
Q 008628 28 KNLEYLTLDSNLLQGSLPDLP---PHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDL 103 (559)
Q Consensus 28 ~~L~~L~Ls~n~~~~~~~~~~---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L 103 (559)
++++.|++++|.+. .+|..+ .+|++|+|++|.++ .+|..++++++|++|++++|.+. .+|..+. +++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 45666666666655 233322 25666666666666 55666666666677777666666 5565555 666677777
Q ss_pred cCCcCCCccchhhc---------CCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEE
Q 008628 104 RMNNFQGTIPQTYA---------KGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLN 174 (559)
Q Consensus 104 ~~n~~~~~~~~~~~---------~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 174 (559)
++|.+.+.+|..+. .+++|++|++++|.+. .+|..++++++|++|++++|.+.+ +|..+..+++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEE
Confidence 66666666665554 4888888888888888 778888888888888888888884 555688888888888
Q ss_pred ccCCccccccCcccccCc-cCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccC
Q 008628 175 VRNNSLSGPIPECLGNST-LEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQIN 252 (559)
Q Consensus 175 l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 252 (559)
+++|.+.+.+|..+.... |+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 888888888887776554 888889888888888888999999999999999998899999999999999998876554
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=4e-25 Score=233.38 Aligned_cols=264 Identities=26% Similarity=0.298 Sum_probs=220.1
Q ss_pred CccCEEECCCCCCCCCCcccccCCcEEEccCCcccccCCCCCCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCc
Q 008628 7 HTLYFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS 86 (559)
Q Consensus 7 ~~L~~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~ 86 (559)
.+++.|++++|+++.+|..++++|++|++++|.++. +|..+++|++|+|++|.++. +|. .+++|++|++++|.+.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT 114 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSC-CCCCCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCC
T ss_pred CCCcEEEecCCCcCccChhhCCCCcEEEecCCCCCC-CCCcCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCC
Confidence 358999999999999999888999999999999984 55677899999999999984 554 6799999999999998
Q ss_pred cccCccccCcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccC
Q 008628 87 GQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGN 166 (559)
Q Consensus 87 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 166 (559)
+ +|. .+++|+.|++++|.++. +|.. +++|++|++++|.+.+ +|. .+++|+.|++++|.+++ +| ..
T Consensus 115 ~-l~~--~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~ 179 (622)
T 3g06_A 115 H-LPA--LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---ML 179 (622)
T ss_dssp C-CCC--CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CC
T ss_pred C-CCC--CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---cc
Confidence 4 554 57899999999999985 4443 5899999999999984 554 35789999999999985 45 45
Q ss_pred CCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEe
Q 008628 167 STSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDV 246 (559)
Q Consensus 167 l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 246 (559)
+++|+.|++++|.+.+ +|.. ..+|+.|++++|.++ .+|. .+++|+.|++++|.+++ +| ..+++|++|++
T Consensus 180 ~~~L~~L~Ls~N~l~~-l~~~--~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~L 248 (622)
T 3g06_A 180 PSGLQELSVSDNQLAS-LPTL--PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMV 248 (622)
T ss_dssp CTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEEC
T ss_pred CCCCcEEECCCCCCCC-CCCc--cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEEC
Confidence 7899999999999986 4433 256999999999998 4443 34789999999999996 44 45689999999
Q ss_pred ecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecChH
Q 008628 247 GNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIW 308 (559)
Q Consensus 247 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 308 (559)
++|.++...+ .+++|++|++++|++. .+|..+ ..+++|+.|++++|++++..+..
T Consensus 249 s~N~L~~lp~----~~~~L~~L~Ls~N~L~-~lp~~l--~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 249 SGNRLTSLPM----LPSGLLSLSVYRNQLT-RLPESL--IHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp CSSCCSCCCC----CCTTCCEEECCSSCCC-SCCGGG--GGSCTTCEEECCSCCCCHHHHHH
T ss_pred CCCCCCcCCc----ccccCcEEeCCCCCCC-cCCHHH--hhccccCEEEecCCCCCCcCHHH
Confidence 9999986433 6789999999999998 455543 67899999999999999776654
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.3e-27 Score=233.56 Aligned_cols=242 Identities=24% Similarity=0.294 Sum_probs=173.2
Q ss_pred cCCcEEEccCCcccccCCCCC-CCccEEEeeeccCC-cccCccCC-------CCCCCCEEEcccCcCccccCccc--c-C
Q 008628 28 KNLEYLTLDSNLLQGSLPDLP-PHMVELLISNNSLT-GEIPSSFC-------NLSSIQYLNLSNNSLSGQIPQCL--G-N 95 (559)
Q Consensus 28 ~~L~~L~Ls~n~~~~~~~~~~-~~L~~L~L~~n~i~-~~~~~~~~-------~l~~L~~L~L~~n~~~~~~~~~~--~-~ 95 (559)
++|+.|++++|.+ .+|..+ ..++.|++++|.+. ...+..+. ++++|++|++++|.+.+.+|..+ . +
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 5677777777777 344322 25777777777763 33444443 57778888888887777666654 4 7
Q ss_pred cccCeEeccCCcCCCccchhhcCC-----CCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcc--cchhc--cC
Q 008628 96 STLETLDLRMNNFQGTIPQTYAKG-----CNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGP--IPEYL--GN 166 (559)
Q Consensus 96 ~~L~~L~L~~n~~~~~~~~~~~~l-----~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~--~~ 166 (559)
++|++|++++|.+++. |..++.+ ++|++|++++|++.+..|..++++++|++|++++|.+.+. .+..+ ..
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 7788888888887766 6666665 7888888888888877667888888888888888877654 23334 77
Q ss_pred CCCCCEEEccCCccccc--cC-ccccc-CccCEEEccCCcCCCCcc-hhhcCCCCccEEEccCCccccCCCccccCCCCC
Q 008628 167 STSLSFLNVRNNSLSGP--IP-ECLGN-STLEILDMRMNKFSGSLP-QTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHL 241 (559)
Q Consensus 167 l~~L~~L~l~~n~l~~~--~~-~~~~~-~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L 241 (559)
+++|++|++++|.+.+. ++ ..+.. .+|+.|++++|.+.+..| ..+..+++|++|++++|.++ .+|..+. ++|
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L 276 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKL 276 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEE
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCc
Confidence 78888888888887732 11 12222 458888888888876654 45566788899999999888 5666665 789
Q ss_pred cEEEeecCccCcccchhhcCCCCCcEEEcccccccc
Q 008628 242 EVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRG 277 (559)
Q Consensus 242 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 277 (559)
++|++++|.+++. |. +..+++|++|++++|++++
T Consensus 277 ~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 277 SVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred eEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 9999999988876 54 7888999999999998764
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=9.5e-27 Score=240.99 Aligned_cols=234 Identities=21% Similarity=0.218 Sum_probs=153.8
Q ss_pred CCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCcccccCccCEEEccC
Q 008628 121 NLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRM 200 (559)
Q Consensus 121 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 200 (559)
+|++|++++|.+.+..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+.+..+. .+|+.|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcC
Confidence 66666776666666555666667777777777776665444 66677777777777766643221 3466666666
Q ss_pred CcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhc-CCCCCcEEEcccccccccC
Q 008628 201 NKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLD-VLPELQVLTLRSNRFRGPI 279 (559)
Q Consensus 201 n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~ 279 (559)
|.+.+..+. .+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+.+..
T Consensus 109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp SCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 666644332 245677777777777766666666667777777777776665555553 4555555555555554321
Q ss_pred CCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhcccc
Q 008628 280 GDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFA 359 (559)
Q Consensus 280 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 359 (559)
+.. . +++|+
T Consensus 186 ~~~----~-------------------------------------------------------------------l~~L~ 194 (487)
T 3oja_A 186 GQV----V-------------------------------------------------------------------FAKLK 194 (487)
T ss_dssp CCC----C-------------------------------------------------------------------CTTCC
T ss_pred ccc----c-------------------------------------------------------------------CCCCC
Confidence 110 1 45666
Q ss_pred EEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCC-ccCcccccCCCCCCeEeCc
Q 008628 360 TIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA-GRIPTQLASLNYLSVLNLS 436 (559)
Q Consensus 360 ~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~l~ 436 (559)
+|++++|.+++..| .+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus 195 ~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 195 TLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 77777777775444 37778888888888888884 5667888888888888888887 5667777777777777775
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=6.4e-25 Score=231.82 Aligned_cols=261 Identities=28% Similarity=0.343 Sum_probs=133.3
Q ss_pred CCCEEEcccCcCccccCccccCcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeC
Q 008628 74 SIQYLNLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGN 153 (559)
Q Consensus 74 ~L~~L~L~~n~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 153 (559)
+++.|++++|.++ .+|..+. ++|++|++++|.++. +|. .+++|++|++++|.++ .+|. .+++|++|++++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~-~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP-AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC-TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECS
T ss_pred CCcEEEecCCCcC-ccChhhC-CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcC
Confidence 4666677666665 4555443 566666666666663 333 3566666666666665 3443 456666666666
Q ss_pred CcCCcccchhccCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCc
Q 008628 154 NNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPP 233 (559)
Q Consensus 154 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~ 233 (559)
|.+++. |. .+++|+.|++++|.+.+ +|... .+|+.|++++|.+++ +|. ..++|+.|++++|.+++ +|
T Consensus 111 N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~l--~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~- 177 (622)
T 3g06_A 111 NPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVLP--PGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP- 177 (622)
T ss_dssp CCCCCC-CC---CCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC-
T ss_pred CcCCCC-CC---CCCCcCEEECCCCCCCc-CCCCC--CCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc-
Confidence 666532 22 34556666666666553 22221 335555555555442 221 22344555555555443 22
Q ss_pred cccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecChHhhhcc
Q 008628 234 SLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGF 313 (559)
Q Consensus 234 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 313 (559)
..+++|+.|++++|.+++... . .++|+.|++++|.++.... .
T Consensus 178 --~~~~~L~~L~Ls~N~l~~l~~----~--------------------------~~~L~~L~L~~N~l~~l~~-~----- 219 (622)
T 3g06_A 178 --MLPSGLQELSVSDNQLASLPT----L--------------------------PSELYKLWAYNNRLTSLPA-L----- 219 (622)
T ss_dssp --CCCTTCCEEECCSSCCSCCCC----C--------------------------CTTCCEEECCSSCCSSCCC-C-----
T ss_pred --ccCCCCcEEECCCCCCCCCCC----c--------------------------cchhhEEECcCCcccccCC-C-----
Confidence 223444455555444443211 1 2345555555554432110 0
Q ss_pred cccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCC
Q 008628 314 KAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLT 393 (559)
Q Consensus 314 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 393 (559)
+++|++|++++|.+++ +| ..+++|+.|+|++|+++
T Consensus 220 -----------------------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~ 254 (622)
T 3g06_A 220 -----------------------------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT 254 (622)
T ss_dssp -----------------------------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS
T ss_pred -----------------------------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC
Confidence 2345555555555554 22 24455666666666655
Q ss_pred CCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEeCcCCccccCCC
Q 008628 394 GGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIP 445 (559)
Q Consensus 394 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p 445 (559)
+ +|. .+++|+.|++++|.++ .+|..+.++++|+.|++++|++++.+|
T Consensus 255 ~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 255 S-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp C-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred c-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 3 332 3455666666666665 445555666666666666666655444
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=3.8e-27 Score=230.13 Aligned_cols=241 Identities=23% Similarity=0.241 Sum_probs=126.3
Q ss_pred CccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCc-cccCcccc--------CcccCeEeccCCcCCCccchhh--cC
Q 008628 50 HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS-GQIPQCLG--------NSTLETLDLRMNNFQGTIPQTY--AK 118 (559)
Q Consensus 50 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~--------~~~L~~L~L~~n~~~~~~~~~~--~~ 118 (559)
+|+.|++++|.+ .+|..+... |+.|++++|.+. ..+|..+. +++|++|++++|.+++..|..+ +.
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 455555555555 344433322 555566665552 23333332 5556666666666655555544 55
Q ss_pred CCCCCEEEcccCcCCCCCCccCCCC-----CCccEEEeeCCcCCcccchhccCCCCCCEEEccCCcccccc--Cccc---
Q 008628 119 GCNLSYLRLSGNHLEGPLPPSLINC-----VKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPI--PECL--- 188 (559)
Q Consensus 119 l~~L~~L~L~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~--- 188 (559)
+++|++|++++|.+.+. |..++.+ ++|++|++++|.+.+..|..+..+++|++|++++|++.+.. +..+
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 66666666666666544 4444444 56666666666665555555666666666666666554321 1111
Q ss_pred ccCccCEEEccCCcCCC---CcchhhcCCCCccEEEccCCccccCCC-ccccCCCCCcEEEeecCccCcccchhhcCCCC
Q 008628 189 GNSTLEILDMRMNKFSG---SLPQTFAKSCVLVSLNLNGNRLEGPLP-PSLVNCRHLEVIDVGNNQINETFPHWLDVLPE 264 (559)
Q Consensus 189 ~~~~L~~L~l~~n~~~~---~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 264 (559)
...+|+.|++++|.+++ .....+..+++|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..+. ++
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~ 275 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AK 275 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SE
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CC
Confidence 22236666666665552 111233455566666666666655443 33444556666666666655 3333333 55
Q ss_pred CcEEEcccccccccCCCCCCCCCCCCceEEEccCccce
Q 008628 265 LQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFT 302 (559)
Q Consensus 265 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 302 (559)
|++|++++|++++. |. +..+++|++|++++|+++
T Consensus 276 L~~L~Ls~N~l~~~-p~---~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 276 LSVLDLSYNRLDRN-PS---PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp EEEEECCSSCCCSC-CC---TTTSCEEEEEECTTCTTT
T ss_pred ceEEECCCCCCCCC-hh---HhhCCCCCEEeccCCCCC
Confidence 66666666665544 22 244556666666666554
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=5.8e-27 Score=229.38 Aligned_cols=260 Identities=19% Similarity=0.186 Sum_probs=198.0
Q ss_pred ccCEEECCCCCCCCCCcccc---cCCcEEEccCCcccccCCC---CCCCccEEEeeeccCCcccCccCCCCCCCCEEEcc
Q 008628 8 TLYFLDLSRNFLTSIDHLPW---KNLEYLTLDSNLLQGSLPD---LPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLS 81 (559)
Q Consensus 8 ~L~~L~ls~n~~~~i~~~~~---~~L~~L~Ls~n~~~~~~~~---~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 81 (559)
.++..+++.+.+.+.+...+ ++|++|++++|.+.+..|. .+.+|+.|++++|.+++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 45666777766654444433 6889999999888876543 34488889998888876554 7888899999999
Q ss_pred cCcCccccCccccCcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccc
Q 008628 82 NNSLSGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIP 161 (559)
Q Consensus 82 ~n~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 161 (559)
+|.+.+ ++ ..++|++|++++|.+++..+.. +++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+
T Consensus 89 ~n~l~~-l~---~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 89 NNYVQE-LL---VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SSEEEE-EE---ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred CCcccc-cc---CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 988763 22 2478889999999888665443 5778899999998887667788888899999999998887766
Q ss_pred hhc-cCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCC
Q 008628 162 EYL-GNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRH 240 (559)
Q Consensus 162 ~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~ 240 (559)
..+ ..+++|++|++++|.+.+. +......+|+.|++++|.+++ ++..+..+++|+.|++++|.+++ +|..+..+++
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~ 238 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQN 238 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTT
T ss_pred HHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhcCCC
Confidence 666 4688899999999988754 444445568889999888884 44458888888999999888884 5667888888
Q ss_pred CcEEEeecCccC-cccchhhcCCCCCcEEEcccc-cccccC
Q 008628 241 LEVIDVGNNQIN-ETFPHWLDVLPELQVLTLRSN-RFRGPI 279 (559)
Q Consensus 241 L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~ 279 (559)
|+.|++++|.+. +..+.++..+++|+.++++++ .+.+..
T Consensus 239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred CCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence 899999888887 677788888888888888854 344433
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.5e-24 Score=208.08 Aligned_cols=219 Identities=19% Similarity=0.139 Sum_probs=114.5
Q ss_pred EEECCCCCCCCCCcccccCCcEEEccCCcccccCCCCC---CCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCcc
Q 008628 11 FLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLP---PHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG 87 (559)
Q Consensus 11 ~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~~~~~~~---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~ 87 (559)
.++.++.+++++|..+.++|++|++++|.+++..+..+ ++|++|++++|.+++..+..|.++++|++|++++|.+.
T Consensus 11 ~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~- 89 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ- 89 (276)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-
T ss_pred eEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-
Confidence 45666666666666666666666666666665443222 24555555555555444444555555555555555554
Q ss_pred ccCccccCcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcc-cchhccC
Q 008628 88 QIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGP-IPEYLGN 166 (559)
Q Consensus 88 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~ 166 (559)
+..+..+..+++|++|++++|.+.+..+..++++++|++|++++|.+.+. +|..+..
T Consensus 90 ----------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~ 147 (276)
T 2z62_A 90 ----------------------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147 (276)
T ss_dssp ----------------------EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG
T ss_pred ----------------------ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc
Confidence 44444444444444444444444433333444445555555555544432 2444455
Q ss_pred CCCCCEEEccCCccccccCcccccCc-cC----EEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCC
Q 008628 167 STSLSFLNVRNNSLSGPIPECLGNST-LE----ILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHL 241 (559)
Q Consensus 167 l~~L~~L~l~~n~l~~~~~~~~~~~~-L~----~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L 241 (559)
+++|++|++++|.+.+..+..+.... ++ .|++++|.+.+..+..+. ..+|+.|++++|.+++..+..+..+++|
T Consensus 148 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L 226 (276)
T 2z62_A 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSL 226 (276)
T ss_dssp CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccc
Confidence 55555555555554443333332211 22 555555555533333332 2356667777776665555556667777
Q ss_pred cEEEeecCccCc
Q 008628 242 EVIDVGNNQINE 253 (559)
Q Consensus 242 ~~L~l~~n~l~~ 253 (559)
++|++++|.+..
T Consensus 227 ~~L~l~~N~~~c 238 (276)
T 2z62_A 227 QKIWLHTNPWDC 238 (276)
T ss_dssp CEEECCSSCBCC
T ss_pred cEEEccCCcccc
Confidence 777777776654
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=2.4e-27 Score=253.30 Aligned_cols=377 Identities=15% Similarity=0.128 Sum_probs=189.0
Q ss_pred CccEEEeeeccCCcccCccCC-CCCCCCEEEcccC-cCccc-cCcccc-CcccCeEeccCCcCCCccchhhc----CCCC
Q 008628 50 HMVELLISNNSLTGEIPSSFC-NLSSIQYLNLSNN-SLSGQ-IPQCLG-NSTLETLDLRMNNFQGTIPQTYA----KGCN 121 (559)
Q Consensus 50 ~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n-~~~~~-~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~----~l~~ 121 (559)
+|++|+|++|.+++..+..+. .+++|++|++++| .+... ++.... +++|++|++++|.+++..+..+. .+++
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~ 185 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence 566666666666554444443 4566666666666 33221 333332 66666666666665544333332 4456
Q ss_pred CCEEEcccCcCCCCCCcc----CCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCc-------cccccCccccc
Q 008628 122 LSYLRLSGNHLEGPLPPS----LINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNS-------LSGPIPECLGN 190 (559)
Q Consensus 122 L~~L~L~~n~~~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~ 190 (559)
|++|++++|. ...-... +.++++|++|++++|...+.++..+..+++|+.|++..+. +.+..+.....
T Consensus 186 L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~ 264 (594)
T 2p1m_B 186 LVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264 (594)
T ss_dssp CCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred CcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence 6666666664 1111111 2335666666666662222355555666666666654432 11111111112
Q ss_pred CccCEE-EccCCcCCCCcchhhcCCCCccEEEccCCccccCCC-ccccCCCCCcEEEeecCccCcc-cchhhcCCCCCcE
Q 008628 191 STLEIL-DMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLP-PSLVNCRHLEVIDVGNNQINET-FPHWLDVLPELQV 267 (559)
Q Consensus 191 ~~L~~L-~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~ 267 (559)
.+|+.+ .+.+... +.++..+..+++|++|++++|.+++... ..+..+++|++|++++| +.+. ++.....+++|++
T Consensus 265 ~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~ 342 (594)
T 2p1m_B 265 KELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRE 342 (594)
T ss_dssp TTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCE
T ss_pred CCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCE
Confidence 225555 2222211 1333334445566666666665443211 12345566666666655 2221 2222234566666
Q ss_pred EEcccc---------cccccCCCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccCCCCc---cccccccccc
Q 008628 268 LTLRSN---------RFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTE---VNYMRSLNYS 335 (559)
Q Consensus 268 L~L~~n---------~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~---~~~l~~~~~~ 335 (559)
|++.++ .+++...... ...+++|+.|+++.|.+++.....+...+++|+.++..... ...+....
T Consensus 343 L~L~~~~~~g~~~~~~l~~~~l~~l-~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~-- 419 (594)
T 2p1m_B 343 LRVFPSEPFVMEPNVALTEQGLVSV-SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP-- 419 (594)
T ss_dssp EEEECSCTTCSSCSSCCCHHHHHHH-HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC--
T ss_pred EEEecCcccccccCCCCCHHHHHHH-HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc--
Confidence 666332 2211000000 01245666666655555544333333334444444332000 00000000
Q ss_pred ceeeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhhc-CCCCCEEEccCCcCCCCCCccc-cCCCCCCEEeCCC
Q 008628 336 YYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGK-LNSLKSLNISHNNLTGGIPSSL-RNLTELESLDLSS 413 (559)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~ 413 (559)
....-......+++|++|++++ .+++..+..+.. +++|++|+|++|.+++..+..+ ..+++|++|+|++
T Consensus 420 --------~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~ 490 (594)
T 2p1m_B 420 --------LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRD 490 (594)
T ss_dssp --------THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEES
T ss_pred --------hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcC
Confidence 0000001123467888888877 666665555554 8889999999888876655554 5678899999998
Q ss_pred CcCCccCcc-cccCCCCCCeEeCcCCccc
Q 008628 414 NKLAGRIPT-QLASLNYLSVLNLSNNQLE 441 (559)
Q Consensus 414 n~l~~~~p~-~l~~l~~L~~L~l~~n~l~ 441 (559)
|.+++..+. ....+++|++|++++|+++
T Consensus 491 n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 491 CPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred CCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 888654333 3455788899999888774
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=5.5e-25 Score=227.75 Aligned_cols=218 Identities=22% Similarity=0.193 Sum_probs=154.9
Q ss_pred CccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccC
Q 008628 145 KLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNG 224 (559)
Q Consensus 145 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 224 (559)
+|++|++++|.+.+..|..|..+++|++|++++|.+.+ ..| +..+++|++|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------------------~~~--l~~l~~L~~L~Ls~ 89 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-----------------------TLD--LESLSTLRTLDLNN 89 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE-----------------------EEE--CTTCTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC-----------------------Ccc--cccCCCCCEEEecC
Confidence 55566666665555555555555555555555555543 222 45556666666666
Q ss_pred CccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceee
Q 008628 225 NRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGV 304 (559)
Q Consensus 225 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 304 (559)
|.+++.. ..++|++|++++|.+++..+. .+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+++.
T Consensus 90 N~l~~l~-----~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~ 159 (487)
T 3oja_A 90 NYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTV 159 (487)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEE
T ss_pred CcCCCCC-----CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCc
Confidence 6665332 226677777777777665443 34667777777777776555444 4577888888888888876
Q ss_pred cChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhhcCCCCCE
Q 008628 305 LPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLKS 384 (559)
Q Consensus 305 ~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 384 (559)
.|..+... +++|++|++++|.+++..+ ...+++|+.
T Consensus 160 ~~~~l~~~------------------------------------------l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~ 195 (487)
T 3oja_A 160 NFAELAAS------------------------------------------SDTLEHLNLQYNFIYDVKG--QVVFAKLKT 195 (487)
T ss_dssp EGGGGGGG------------------------------------------TTTCCEEECTTSCCCEEEC--CCCCTTCCE
T ss_pred ChHHHhhh------------------------------------------CCcccEEecCCCccccccc--cccCCCCCE
Confidence 66443221 6789999999999987743 346999999
Q ss_pred EEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEeCcCCccccC
Q 008628 385 LNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGP 443 (559)
Q Consensus 385 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 443 (559)
|+|++|.+++.+| .+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|++.|.
T Consensus 196 L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 196 LDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp EECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHH
T ss_pred EECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCc
Confidence 9999999997655 48899999999999999996 677899999999999999999843
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.4e-23 Score=200.31 Aligned_cols=206 Identities=22% Similarity=0.290 Sum_probs=142.7
Q ss_pred cCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEccc
Q 008628 193 LEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRS 272 (559)
Q Consensus 193 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 272 (559)
.+.++++++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.++...+..+..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 344555555444 2333222 3455566666555554444555566666666666666555555555566666666666
Q ss_pred ccccccCCCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHH
Q 008628 273 NRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQME 352 (559)
Q Consensus 273 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 352 (559)
|.+.+..+..+ ..+++|++|++++|.+++..+..+ .
T Consensus 95 n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~-~----------------------------------------- 130 (270)
T 2o6q_A 95 NKLQALPIGVF--DQLVNLAELRLDRNQLKSLPPRVF-D----------------------------------------- 130 (270)
T ss_dssp SCCCCCCTTTT--TTCSSCCEEECCSSCCCCCCTTTT-T-----------------------------------------
T ss_pred CcCCcCCHhHc--ccccCCCEEECCCCccCeeCHHHh-C-----------------------------------------
Confidence 66554333222 445666666666666654433221 0
Q ss_pred HhhccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCe
Q 008628 353 RILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSV 432 (559)
Q Consensus 353 ~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 432 (559)
.+++|++|++++|.+++..+..+..+++|++|+|++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|+.
T Consensus 131 -~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 209 (270)
T 2o6q_A 131 -SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209 (270)
T ss_dssp -TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred -cCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCE
Confidence 1678888888898888777777899999999999999999888888999999999999999999887778999999999
Q ss_pred EeCcCCccccCCCC
Q 008628 433 LNLSNNQLEGPIPE 446 (559)
Q Consensus 433 L~l~~n~l~~~~p~ 446 (559)
|++++|++.|.++.
T Consensus 210 L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 210 LQLQENPWDCTCNG 223 (270)
T ss_dssp EECCSSCBCCSSSS
T ss_pred EEecCCCeeCCCcc
Confidence 99999999998864
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.3e-23 Score=201.53 Aligned_cols=205 Identities=25% Similarity=0.231 Sum_probs=169.0
Q ss_pred CCCCEEEcccCcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEe
Q 008628 73 SSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDV 151 (559)
Q Consensus 73 ~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 151 (559)
++|++|++++|.+.+..+..+. +++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 3566666666666544444444 666666666666666666677889999999999999999877789999999999999
Q ss_pred eCCcCCcccchhccCCCCCCEEEccCCccccc-cCcccccCc-cCEEEccCCcCCCCcchhhcCCCCcc----EEEccCC
Q 008628 152 GNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGP-IPECLGNST-LEILDMRMNKFSGSLPQTFAKSCVLV----SLNLNGN 225 (559)
Q Consensus 152 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~L~----~L~L~~n 225 (559)
++|.+.+..+..+..+++|++|++++|.+.+. +|..+.... |+.|++++|.+++..+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99999987777899999999999999999864 577776654 99999999999987777777777776 8999999
Q ss_pred ccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEccccccccc
Q 008628 226 RLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGP 278 (559)
Q Consensus 226 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 278 (559)
.+++..+..+.. .+|++|++++|.+++..+..+..+++|++|++++|++.+.
T Consensus 188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 999766665554 4899999999999988888889999999999999998743
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=7.9e-27 Score=249.32 Aligned_cols=415 Identities=13% Similarity=0.084 Sum_probs=273.0
Q ss_pred cCCCccCEEECCCCCC-CCC---Ccc--------------cccCCcEEEccCCcccccCCC----CCCCccEEEeeec-c
Q 008628 4 IGVHTLYFLDLSRNFL-TSI---DHL--------------PWKNLEYLTLDSNLLQGSLPD----LPPHMVELLISNN-S 60 (559)
Q Consensus 4 ~~l~~L~~L~ls~n~~-~~i---~~~--------------~~~~L~~L~Ls~n~~~~~~~~----~~~~L~~L~L~~n-~ 60 (559)
.++++|++|+++++.. ..+ |.. ..++|++|++++|.+++..+. .+++|++|++++| .
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 3578999999999862 222 211 128999999999988764332 3569999999998 5
Q ss_pred CCcc-cCccCCCCCCCCEEEcccCcCccccCcc----cc-CcccCeEeccCCc--CCC-ccchhhcCCCCCCEEEcccCc
Q 008628 61 LTGE-IPSSFCNLSSIQYLNLSNNSLSGQIPQC----LG-NSTLETLDLRMNN--FQG-TIPQTYAKGCNLSYLRLSGNH 131 (559)
Q Consensus 61 i~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~----~~-~~~L~~L~L~~n~--~~~-~~~~~~~~l~~L~~L~L~~n~ 131 (559)
++.. .+..+.++++|++|++++|.+.+..+.. .. +++|++|++++|. +.. ..+..+..+++|++|++++|.
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence 5532 3344457999999999999876543332 22 7799999999997 321 122334567999999999984
Q ss_pred CCCCCCccCCCCCCccEEEeeCCc-------CCcccchhccCCCCCCEE-EccCCccccccCccc-ccCccCEEEccCCc
Q 008628 132 LEGPLPPSLINCVKLHFLDVGNNN-------LSGPIPEYLGNSTSLSFL-NVRNNSLSGPIPECL-GNSTLEILDMRMNK 202 (559)
Q Consensus 132 ~~~~~~~~l~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~ 202 (559)
..+.++..+..+++|++|+++.+. +.+ ++..+.++++|+.| .+..... +.++... ...+|+.|++++|.
T Consensus 223 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~ 300 (594)
T 2p1m_B 223 PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYAT 300 (594)
T ss_dssp CHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCC
T ss_pred cHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCC
Confidence 333366777889999999976553 232 34467888999988 3433322 2233333 23459999999998
Q ss_pred CCCC-cchhhcCCCCccEEEccCCccccC-CCccccCCCCCcEEEeec---------CccCcccchhh-cCCCCCcEEEc
Q 008628 203 FSGS-LPQTFAKSCVLVSLNLNGNRLEGP-LPPSLVNCRHLEVIDVGN---------NQINETFPHWL-DVLPELQVLTL 270 (559)
Q Consensus 203 ~~~~-~~~~~~~~~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~---------n~l~~~~~~~~-~~l~~L~~L~L 270 (559)
+++. +...+..+++|++|++++| +... .+.....+++|++|++.+ +.+++.....+ ..+++|++|.+
T Consensus 301 l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~ 379 (594)
T 2p1m_B 301 VQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY 379 (594)
T ss_dssp CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred CCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH
Confidence 6643 2334568899999999988 4322 222233578899999844 35554333333 34889999988
Q ss_pred ccccccccCCCCCCCCCCCCceEEEcc--C----ccceeecC----hHhhhcccccccccCCCCcccccccccccceeee
Q 008628 271 RSNRFRGPIGDTKTRVPFPKLRIIDLS--Y----NRFTGVLP----IWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESI 340 (559)
Q Consensus 271 ~~n~l~~~~~~~~~~~~l~~L~~L~l~--~----n~l~~~~~----~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~ 340 (559)
+.|.+++...... ...+++|+.|+++ + +.+++... ...+..++.|+.++... . +.
T Consensus 380 ~~~~l~~~~~~~l-~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~---l~---------- 444 (594)
T 2p1m_B 380 FCRQMTNAALITI-ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-L---LT---------- 444 (594)
T ss_dssp EESCCCHHHHHHH-HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-S---CC----------
T ss_pred hcCCcCHHHHHHH-HhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-c---cc----------
Confidence 8887764322221 1247889999998 3 44442211 12244555565555432 1 00
Q ss_pred EEeecCchhhH-HHhhccccEEEcCCcccccccchhh-hcCCCCCEEEccCCcCCCCCCc-cccCCCCCCEEeCCCCcCC
Q 008628 341 SLTMKGNNIQM-ERILTTFATIDLSSNRFQGEISQVL-GKLNSLKSLNISHNNLTGGIPS-SLRNLTELESLDLSSNKLA 417 (559)
Q Consensus 341 ~~~~~~~~~~~-~~~l~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~ 417 (559)
...+.. ...+++|++|++++|.+++..+..+ ..+++|++|+|++|.+++.... ....+++|++|++++|+++
T Consensus 445 -----~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 445 -----DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp -----HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred -----HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 001111 1237889999999999987766655 7799999999999999755443 4456899999999999986
Q ss_pred ccCcccc-cCCCCCCeEeCcCCccc
Q 008628 418 GRIPTQL-ASLNYLSVLNLSNNQLE 441 (559)
Q Consensus 418 ~~~p~~l-~~l~~L~~L~l~~n~l~ 441 (559)
......+ ..++.|+...+..+.-.
T Consensus 520 ~~~~~~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 520 FGACKLLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp HHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred HHHHHHHHHhCCCCEEEEecCCCcc
Confidence 5433344 56778877666665433
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.2e-22 Score=193.83 Aligned_cols=202 Identities=24% Similarity=0.286 Sum_probs=128.0
Q ss_pred cCCcEEEccCCcccccCCCCCCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCeEeccCC
Q 008628 28 KNLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMN 106 (559)
Q Consensus 28 ~~L~~L~Ls~n~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n 106 (559)
.+.++++++++.++......+.+++.|++++|.+++..+..|.++++|++|++++|.+....+..+. +++|++|++++|
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 3455666666666543333334666666666666655556677778888888888777644444444 677777777777
Q ss_pred cCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCc
Q 008628 107 NFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPE 186 (559)
Q Consensus 107 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 186 (559)
.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-- 173 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP-- 173 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC--
Confidence 777666666677777777777777777665666677777777777777776555555666666666666666655433
Q ss_pred ccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccC
Q 008628 187 CLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQIN 252 (559)
Q Consensus 187 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 252 (559)
+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 174 ---------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 174 ---------------------EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp ---------------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ---------------------hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 333445555666666666665544445556666666666666554
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.3e-22 Score=195.41 Aligned_cols=176 Identities=25% Similarity=0.204 Sum_probs=97.9
Q ss_pred ccCCCccCEEECCCCCCCCCCcccccCCcEEEccCCcccccCCCCC---CCccEEEeeeccCCcccCccCCCCCCCCEEE
Q 008628 3 DIGVHTLYFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLP---PHMVELLISNNSLTGEIPSSFCNLSSIQYLN 79 (559)
Q Consensus 3 ~~~l~~L~~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~~~~~~~---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 79 (559)
..++++++++++++++++.+|..++++++.|++++|.+.+..+..+ .+|+.|++++|.+++..+. +.+++|++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~ 83 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLD 83 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEE
Confidence 4567778888888888887777777777777777777665443322 2555555555555533221 4455555555
Q ss_pred cccCcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCc
Q 008628 80 LSNNSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSG 158 (559)
Q Consensus 80 L~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 158 (559)
+++|.+. .+|..+. +++|++|++++|.+++..+..|..+++|++|++++|++.+..+..|..+++|++|++++|+++.
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 5555554 3444433 5555555555555554444455555555555555555554444444455555555555555554
Q ss_pred ccchhccCCCCCCEEEccCCccc
Q 008628 159 PIPEYLGNSTSLSFLNVRNNSLS 181 (559)
Q Consensus 159 ~~~~~~~~l~~L~~L~l~~n~l~ 181 (559)
..+..|..+++|+.|++++|.+.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCHHHhcCcCCCCEEECCCCcCC
Confidence 43344444555555555555444
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=3.6e-23 Score=201.76 Aligned_cols=206 Identities=22% Similarity=0.251 Sum_probs=151.0
Q ss_pred ccCEEEccCCcCCCCcchhh--cCCCCccEEEccCCccccCCC----ccccCCCCCcEEEeecCccCcccchhhcCCCCC
Q 008628 192 TLEILDMRMNKFSGSLPQTF--AKSCVLVSLNLNGNRLEGPLP----PSLVNCRHLEVIDVGNNQINETFPHWLDVLPEL 265 (559)
Q Consensus 192 ~L~~L~l~~n~~~~~~~~~~--~~~~~L~~L~L~~n~~~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 265 (559)
.|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..++.+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 36666666666666666655 667777777777777775444 334567788888888888877777778888888
Q ss_pred cEEEccccccccc--CCCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccCCCCcccccccccccceeeeEEe
Q 008628 266 QVLTLRSNRFRGP--IGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLT 343 (559)
Q Consensus 266 ~~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 343 (559)
++|++++|++.+. .+.......+++|++|++++|.++...+...
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~---------------------------------- 217 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCA---------------------------------- 217 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHH----------------------------------
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHH----------------------------------
Confidence 8888888886542 2222223567888999999888863211100
Q ss_pred ecCchhhHHHhhccccEEEcCCcccccccchhhhcC---CCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccC
Q 008628 344 MKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKL---NSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRI 420 (559)
Q Consensus 344 ~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 420 (559)
.....+++|++|++++|.+++..|..+..+ ++|++|+|++|+++ .+|..+. ++|++|++++|++++.
T Consensus 218 ------~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~- 287 (310)
T 4glp_A 218 ------ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA- 287 (310)
T ss_dssp ------HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-
T ss_pred ------HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-
Confidence 001226889999999999998878777776 69999999999999 5676664 7999999999999964
Q ss_pred cccccCCCCCCeEeCcCCcccc
Q 008628 421 PTQLASLNYLSVLNLSNNQLEG 442 (559)
Q Consensus 421 p~~l~~l~~L~~L~l~~n~l~~ 442 (559)
|. +..+++|+.|++++|+++.
T Consensus 288 ~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 288 PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CC-TTSCCCCSCEECSSTTTSC
T ss_pred ch-hhhCCCccEEECcCCCCCC
Confidence 43 6788999999999999874
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.2e-22 Score=194.13 Aligned_cols=221 Identities=22% Similarity=0.250 Sum_probs=128.9
Q ss_pred ccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCccccCcccCeEeccCCcCCCccchhhcCCCCCCEEEcccC
Q 008628 51 MVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGN 130 (559)
Q Consensus 51 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 130 (559)
+..+++..+.+.+.. ....+++|+.|++++|.+. .++..-.+++|++|++++|.+.+. ..+..+++|++|++++|
T Consensus 21 l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 21 TIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCC-CCTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTS
T ss_pred HHHHHhcCccccccc--ccccccceeeeeeCCCCcc-cccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCC
Confidence 334444444444322 2334566666666666554 233222255666666666655532 24555555556665555
Q ss_pred cCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchh
Q 008628 131 HLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQT 210 (559)
Q Consensus 131 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 210 (559)
.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+ ++..+..
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-----------------------~~~~~~~ 152 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL-----------------------QSLPKGV 152 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-----------------------CCCCTTT
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCcc-----------------------CccCHHH
Confidence 55544444455555555555555555544444455555555555555544 4444445
Q ss_pred hcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCC
Q 008628 211 FAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPK 290 (559)
Q Consensus 211 ~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 290 (559)
+..+++|+.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++. +.+++
T Consensus 153 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---------~~~~~ 223 (272)
T 3rfs_A 153 FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---------CTCPG 223 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC---------CCTTT
T ss_pred hccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc---------ccCcH
Confidence 566666777777777776666666667777777777777777766666677777777777777665 33556
Q ss_pred ceEEEccCccceeecChH
Q 008628 291 LRIIDLSYNRFTGVLPIW 308 (559)
Q Consensus 291 L~~L~l~~n~l~~~~~~~ 308 (559)
|+.++++.|.++|.+|..
T Consensus 224 l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 224 IRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp THHHHHHHHHTGGGBBCT
T ss_pred HHHHHHHHHhCCCcccCc
Confidence 777777777777766643
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.8e-22 Score=192.92 Aligned_cols=223 Identities=19% Similarity=0.182 Sum_probs=158.7
Q ss_pred cCEEECCCCCCCCC-CcccccCCcEEEccCCcccccCC-CCCCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCc
Q 008628 9 LYFLDLSRNFLTSI-DHLPWKNLEYLTLDSNLLQGSLP-DLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS 86 (559)
Q Consensus 9 L~~L~ls~n~~~~i-~~~~~~~L~~L~Ls~n~~~~~~~-~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~ 86 (559)
+..+++..+.+..+ .....++|+.|++++|.+..... ..+++|++|++++|.+++. ..+.++++|++|++++|.+.
T Consensus 21 l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~ 98 (272)
T 3rfs_A 21 TIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ 98 (272)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC
T ss_pred HHHHHhcCcccccccccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC
Confidence 33445555555532 22333777777777777664211 2234777888887777742 36777888888888888887
Q ss_pred cccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhcc
Q 008628 87 GQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLG 165 (559)
Q Consensus 87 ~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 165 (559)
+..+..+. +++|++|++++|.+++..+..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.
T Consensus 99 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 178 (272)
T 3rfs_A 99 SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD 178 (272)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhc
Confidence 66555555 78888888888888877777778888888888888888766666677888888888888888876666677
Q ss_pred CCCCCCEEEccCCccccccCcccccC-ccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCC
Q 008628 166 NSTSLSFLNVRNNSLSGPIPECLGNS-TLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRH 240 (559)
Q Consensus 166 ~l~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~ 240 (559)
.+++|++|++++|.+.+..+..+... +|+.|++++|.+.+ .+++++.+++..|.++|.+|..++.+..
T Consensus 179 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 179 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 88888888888888887666655543 38888888887663 3456778888888888888877766543
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=7.7e-22 Score=189.93 Aligned_cols=199 Identities=24% Similarity=0.180 Sum_probs=136.9
Q ss_pred cCCcEEEccCCcccccCCCCCCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCccccCcccCeEeccCCc
Q 008628 28 KNLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLRMNN 107 (559)
Q Consensus 28 ~~L~~L~Ls~n~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~L~~n~ 107 (559)
+++++++++++.++...+..+.+++.|++++|.+++..+..|.++++|++|++++|.+.+ ++..-.+++|++|++++|.
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~ 88 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVDGTLPVLGTLDLSHNQ 88 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECCSCCTTCCEEECCSSC
T ss_pred CCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCCCCCCcCCEEECCCCc
Confidence 788999999998886655666689999999999888778888889999999999988874 3333237777777777777
Q ss_pred CCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCcc
Q 008628 108 FQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPEC 187 (559)
Q Consensus 108 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 187 (559)
++ .+|..+..+++|++|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|+.|++++|++.+..
T Consensus 89 l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~--- 164 (290)
T 1p9a_G 89 LQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP--- 164 (290)
T ss_dssp CS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC---
T ss_pred CC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC---
Confidence 76 45566667777777777777777555566677777777777777776555555666666666666666655333
Q ss_pred cccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccC
Q 008628 188 LGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQIN 252 (559)
Q Consensus 188 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 252 (559)
+..+..+++|+.|++++|+++ .+|..+....+|+.+++++|.+.
T Consensus 165 --------------------~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 165 --------------------AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp --------------------TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred --------------------HHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 333445555666666666655 34445555556666666666554
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=9.8e-22 Score=185.42 Aligned_cols=177 Identities=19% Similarity=0.144 Sum_probs=138.8
Q ss_pred CccCEEECCCCCCCCCCcccccCCcEEEccCCcccccCCCCC---CCccEEEeeeccCCcccCccCCCCCCCCEEEcccC
Q 008628 7 HTLYFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLP---PHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNN 83 (559)
Q Consensus 7 ~~L~~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~~~~~~~---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 83 (559)
.+.+++++++++++.+|..+.++++.|++++|.+.+..+..+ .+|++|+|++|.+++..+..|.++++|++|++++|
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 346788999988888888888888888888888887666544 37888888888888777777888888888888888
Q ss_pred cCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccch
Q 008628 84 SLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPE 162 (559)
Q Consensus 84 ~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 162 (559)
.+.+..+..+. +++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 88765556665 78888888888888876666777888888888888888766556777888888888888888776666
Q ss_pred hccCCCCCCEEEccCCccccc
Q 008628 163 YLGNSTSLSFLNVRNNSLSGP 183 (559)
Q Consensus 163 ~~~~l~~L~~L~l~~n~l~~~ 183 (559)
.+..+++|+.|++++|++...
T Consensus 174 ~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTCTTCCEEECCSCCBCTT
T ss_pred HHhCCCCCCEEEeeCCceeCC
Confidence 777788888888888877654
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=2.9e-23 Score=205.18 Aligned_cols=250 Identities=19% Similarity=0.244 Sum_probs=166.6
Q ss_pred ccEEEeeCCcCCcccchhccCC--CCCCEEEccCCccccccCcccccCccCEEEccCCcCCCC-cchhhcCCCCccEEEc
Q 008628 146 LHFLDVGNNNLSGPIPEYLGNS--TSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGS-LPQTFAKSCVLVSLNL 222 (559)
Q Consensus 146 L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~L 222 (559)
++.++++++.+. +..+..+ ++++.|++.+|.+.+..+..+...+|+.|++++|.+.+. ++..+..+++|++|++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 445555555543 2334444 566666666666666555555445577777777766544 6667777778888888
Q ss_pred cCCccccCCCccccCCCCCcEEEeecC-ccCcc-cchhhcCCCCCcEEEcccc-ccccc-CCCCCCCCCCC-CceEEEcc
Q 008628 223 NGNRLEGPLPPSLVNCRHLEVIDVGNN-QINET-FPHWLDVLPELQVLTLRSN-RFRGP-IGDTKTRVPFP-KLRIIDLS 297 (559)
Q Consensus 223 ~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~~~l~-~L~~L~l~ 297 (559)
++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++... ..++ +|++|+++
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~l~~~L~~L~l~ 203 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV--AHVSETITQLNLS 203 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH--HHSCTTCCEEECC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH--HhcccCCCEEEeC
Confidence 888777666677777788888888887 56652 5556677788888888887 66532 12211 4466 78888888
Q ss_pred Ccc--cee-ecChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCcc-cccccc
Q 008628 298 YNR--FTG-VLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNR-FQGEIS 373 (559)
Q Consensus 298 ~n~--l~~-~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~-l~~~~~ 373 (559)
+|. +++ .++.. ...+++|++|++++|. +++..+
T Consensus 204 ~~~~~~~~~~l~~~-------------------------------------------~~~~~~L~~L~l~~~~~l~~~~~ 240 (336)
T 2ast_B 204 GYRKNLQKSDLSTL-------------------------------------------VRRCPNLVHLDLSDSVMLKNDCF 240 (336)
T ss_dssp SCGGGSCHHHHHHH-------------------------------------------HHHCTTCSEEECTTCTTCCGGGG
T ss_pred CCcccCCHHHHHHH-------------------------------------------HhhCCCCCEEeCCCCCcCCHHHH
Confidence 773 331 11111 1226788999999998 777777
Q ss_pred hhhhcCCCCCEEEccCCc-CCCCCCccccCCCCCCEEeCCCCcCCccCcccccCC-CCCCeEeCcCCccccCCCCC
Q 008628 374 QVLGKLNSLKSLNISHNN-LTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASL-NYLSVLNLSNNQLEGPIPEG 447 (559)
Q Consensus 374 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~l~~n~l~~~~p~~ 447 (559)
..+..+++|++|++++|. +.......+..+++|++|++++| +.. ..+..+ ..+..|++++|++++..|..
T Consensus 241 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 241 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence 788889999999999995 33332336778899999999998 432 234444 24777778999999887753
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=8.7e-22 Score=184.38 Aligned_cols=184 Identities=17% Similarity=0.220 Sum_probs=126.8
Q ss_pred cCCCCCCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCc-CccccCcccc-CcccCeEeccC-CcCCCccchhhcCC
Q 008628 43 SLPDLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNS-LSGQIPQCLG-NSTLETLDLRM-NNFQGTIPQTYAKG 119 (559)
Q Consensus 43 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~-~~~L~~L~L~~-n~~~~~~~~~~~~l 119 (559)
.+|....++++|++++|.+++..+..|+++++|++|++++|. +....+..+. +++|++|++++ |.+++..+..|..+
T Consensus 25 ~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l 104 (239)
T 2xwt_C 25 RIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL 104 (239)
T ss_dssp SCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECC
T ss_pred ccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC
Confidence 344433478888888888887766778888889999998886 7655555665 88888888888 88887777788888
Q ss_pred CCCCEEEcccCcCCCCCCccCCCCCCcc---EEEeeCC-cCCcccchhccCCCCCC-EEEccCCccccccCcccccCccC
Q 008628 120 CNLSYLRLSGNHLEGPLPPSLINCVKLH---FLDVGNN-NLSGPIPEYLGNSTSLS-FLNVRNNSLSGPIPECLGNSTLE 194 (559)
Q Consensus 120 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~L~ 194 (559)
++|++|++++|.+.+ +|. +..+++|+ +|++++| .+.+..+..|..+++|+ +|++++|.+....+..+...+|+
T Consensus 105 ~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~ 182 (239)
T 2xwt_C 105 PLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLD 182 (239)
T ss_dssp TTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEE
T ss_pred CCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCC
Confidence 889999998888885 565 77788887 8888888 88766666788888888 88888887773333333333355
Q ss_pred EEEccCCc-CCCCcchhhcCC-CCccEEEccCCccc
Q 008628 195 ILDMRMNK-FSGSLPQTFAKS-CVLVSLNLNGNRLE 228 (559)
Q Consensus 195 ~L~l~~n~-~~~~~~~~~~~~-~~L~~L~L~~n~~~ 228 (559)
.|++++|+ +++..+..+..+ ++|+.|++++|+++
T Consensus 183 ~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp EEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred EEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 55555552 443333344444 44444444444444
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.3e-23 Score=209.51 Aligned_cols=84 Identities=19% Similarity=0.142 Sum_probs=52.5
Q ss_pred eEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCC----ccCCCCC-CccEEEeeCCcCCcccchhccCC-----CC
Q 008628 100 TLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLP----PSLINCV-KLHFLDVGNNNLSGPIPEYLGNS-----TS 169 (559)
Q Consensus 100 ~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~ 169 (559)
++++++|.+++.+|..+....+|++|++++|.+.+..+ ..+..++ +|++|++++|.+.+..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35667777777777666666667777777777665444 4555666 67777777766665555444443 55
Q ss_pred CCEEEccCCccccc
Q 008628 170 LSFLNVRNNSLSGP 183 (559)
Q Consensus 170 L~~L~l~~n~l~~~ 183 (559)
|++|++++|.+.+.
T Consensus 82 L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 82 VTSLNLSGNFLSYK 95 (362)
T ss_dssp CCEEECCSSCGGGS
T ss_pred ccEEECcCCcCChH
Confidence 66666666655543
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=2.3e-21 Score=181.47 Aligned_cols=196 Identities=17% Similarity=0.173 Sum_probs=135.2
Q ss_pred ccCEEEccCCcCCCCcchhhcCCCCccEEEccCCc-cccCCCccccCCCCCcEEEeec-CccCcccchhhcCCCCCcEEE
Q 008628 192 TLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNR-LEGPLPPSLVNCRHLEVIDVGN-NQINETFPHWLDVLPELQVLT 269 (559)
Q Consensus 192 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~ 269 (559)
.++.|++++|.+++..+..+..+++|++|++++|+ +++..+..|.++++|++|++++ |.+++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 47777777777775556677778888888888886 7766666788888888888887 788777777788888888888
Q ss_pred cccccccccCCCCCCCCCCCCce---EEEccCc-cceeecChHhhhcccccccccCCCCcccccccccccceeeeEEeec
Q 008628 270 LRSNRFRGPIGDTKTRVPFPKLR---IIDLSYN-RFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMK 345 (559)
Q Consensus 270 L~~n~l~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 345 (559)
+++|++.+ ++. +..+++|+ +|++++| .+++..+..+.
T Consensus 112 l~~n~l~~-lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~----------------------------------- 152 (239)
T 2xwt_C 112 IFNTGLKM-FPD---LTKVYSTDIFFILEITDNPYMTSIPVNAFQ----------------------------------- 152 (239)
T ss_dssp EEEECCCS-CCC---CTTCCBCCSEEEEEEESCTTCCEECTTTTT-----------------------------------
T ss_pred CCCCCCcc-ccc---cccccccccccEEECCCCcchhhcCccccc-----------------------------------
Confidence 88888765 333 24455555 7777777 66654432211
Q ss_pred CchhhHHHhhcccc-EEEcCCcccccccchhhhcCCCCCEEEccCCc-CCCCCCccccCC-CCCCEEeCCCCcCCccCcc
Q 008628 346 GNNIQMERILTTFA-TIDLSSNRFQGEISQVLGKLNSLKSLNISHNN-LTGGIPSSLRNL-TELESLDLSSNKLAGRIPT 422 (559)
Q Consensus 346 ~~~~~~~~~l~~L~-~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~p~ 422 (559)
.+++|+ +|++++|.++...+..+.. ++|++|+|++|+ +++..+..|..+ ++|++|++++|++++..+.
T Consensus 153 --------~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 153 --------GLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223 (239)
T ss_dssp --------TTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred --------chhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence 056677 7777777777444444444 677777777774 776666677777 7777777777777744332
Q ss_pred cccCCCCCCeEeCcCC
Q 008628 423 QLASLNYLSVLNLSNN 438 (559)
Q Consensus 423 ~l~~l~~L~~L~l~~n 438 (559)
.+++|+.|+++++
T Consensus 224 ---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 224 ---GLEHLKELIARNT 236 (239)
T ss_dssp ---TCTTCSEEECTTC
T ss_pred ---HhccCceeeccCc
Confidence 5667777777665
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=2.2e-23 Score=210.09 Aligned_cols=256 Identities=19% Similarity=0.228 Sum_probs=146.2
Q ss_pred CCCccCCCCCCccEEEeeCCcCCcccc----hhccCCCCCCEEEccCCccc---cccCcccccCccCEEEccCCcCCCCc
Q 008628 135 PLPPSLINCVKLHFLDVGNNNLSGPIP----EYLGNSTSLSFLNVRNNSLS---GPIPECLGNSTLEILDMRMNKFSGSL 207 (559)
Q Consensus 135 ~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~~~L~~L~l~~n~~~~~~ 207 (559)
.++..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+. +.+|..+. .+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~----------------~l 86 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR----------------LL 86 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH----------------HH
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHH----------------HH
Confidence 355666677888888888888776533 33667788888888775433 33333220 11
Q ss_pred chhhcCCCCccEEEccCCcccc----CCCccccCCCCCcEEEeecCccCcccchhh----cCC---------CCCcEEEc
Q 008628 208 PQTFAKSCVLVSLNLNGNRLEG----PLPPSLVNCRHLEVIDVGNNQINETFPHWL----DVL---------PELQVLTL 270 (559)
Q Consensus 208 ~~~~~~~~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~----~~l---------~~L~~L~L 270 (559)
...+..+++|++|++++|.+++ .++..+..+++|++|++++|.++...+..+ ..+ ++|++|++
T Consensus 87 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 87 LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence 1223444555555555555544 233444555555555555555543222222 222 55556666
Q ss_pred ccccccc-cCCCC-CCCCCCCCceEEEccCccceeecChHhhh-cccccccccCCCCcccccccccccceeeeEEeecCc
Q 008628 271 RSNRFRG-PIGDT-KTRVPFPKLRIIDLSYNRFTGVLPIWYLN-GFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGN 347 (559)
Q Consensus 271 ~~n~l~~-~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 347 (559)
++|++.. .++.. ..+..+++|+.|++++|+++......... .+
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l---------------------------------- 212 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL---------------------------------- 212 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG----------------------------------
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHh----------------------------------
Confidence 5555541 11100 01123456666666666554211000000 00
Q ss_pred hhhHHHhhccccEEEcCCcccc----cccchhhhcCCCCCEEEccCCcCCCC----CCcccc--CCCCCCEEeCCCCcCC
Q 008628 348 NIQMERILTTFATIDLSSNRFQ----GEISQVLGKLNSLKSLNISHNNLTGG----IPSSLR--NLTELESLDLSSNKLA 417 (559)
Q Consensus 348 ~~~~~~~l~~L~~L~ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~--~l~~L~~L~Ls~n~l~ 417 (559)
..+++|++|++++|.++ ..+|..+..+++|++|+|++|.+++. ++..+. .+++|++|+|++|.+.
T Consensus 213 -----~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 213 -----AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp -----GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred -----hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 11567777777777775 45666777788888888888887755 455553 3788888888888888
Q ss_pred c----cCcccc-cCCCCCCeEeCcCCccccCCC
Q 008628 418 G----RIPTQL-ASLNYLSVLNLSNNQLEGPIP 445 (559)
Q Consensus 418 ~----~~p~~l-~~l~~L~~L~l~~n~l~~~~p 445 (559)
+ .+|..+ .++++|++|++++|++++..|
T Consensus 288 ~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 288 LDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 6 366666 567888888888888876553
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=8.1e-23 Score=203.81 Aligned_cols=257 Identities=19% Similarity=0.186 Sum_probs=141.0
Q ss_pred EEeeeccCCcccCccCCCCCCCCEEEcccCcCccccC----cccc-Cc-ccCeEeccCCcCCCccchhhcCC-----CCC
Q 008628 54 LLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIP----QCLG-NS-TLETLDLRMNNFQGTIPQTYAKG-----CNL 122 (559)
Q Consensus 54 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~----~~~~-~~-~L~~L~L~~n~~~~~~~~~~~~l-----~~L 122 (559)
+++++|.+++.+|..+...++|++|++++|.+.+..+ ..+. ++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3445555555555444444445555555555543333 2333 34 55555555555555444444443 556
Q ss_pred CEEEcccCcCCCCCCcc----CCCC-CCccEEEeeCCcCCcccchhc----cC-CCCCCEEEccCCccccccCccc----
Q 008628 123 SYLRLSGNHLEGPLPPS----LINC-VKLHFLDVGNNNLSGPIPEYL----GN-STSLSFLNVRNNSLSGPIPECL---- 188 (559)
Q Consensus 123 ~~L~L~~n~~~~~~~~~----l~~l-~~L~~L~l~~n~l~~~~~~~~----~~-l~~L~~L~l~~n~l~~~~~~~~---- 188 (559)
++|++++|.+.+..+.. +..+ ++|++|++++|.+.+..+..+ .. .++|++|++++|.+.+.....+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 66666666555433332 2223 556666666666554443332 22 2466666666666653222221
Q ss_pred c-c-CccCEEEccCCcCCCCcchh----hcCC-CCccEEEccCCccccC----CCccccC-CCCCcEEEeecCccCcccc
Q 008628 189 G-N-STLEILDMRMNKFSGSLPQT----FAKS-CVLVSLNLNGNRLEGP----LPPSLVN-CRHLEVIDVGNNQINETFP 256 (559)
Q Consensus 189 ~-~-~~L~~L~l~~n~~~~~~~~~----~~~~-~~L~~L~L~~n~~~~~----~~~~l~~-l~~L~~L~l~~n~l~~~~~ 256 (559)
. . .+|+.|++++|.+++..+.. +... ++|++|++++|.+++. ++..+.. .++|++|++++|.+++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 1 1 24666666666666544433 3334 4777777777777653 2333433 3577888888887776544
Q ss_pred ----hhhcCCCCCcEEEcccccccccCCC-----CCCCCCCCCceEEEccCccceeecChHhh
Q 008628 257 ----HWLDVLPELQVLTLRSNRFRGPIGD-----TKTRVPFPKLRIIDLSYNRFTGVLPIWYL 310 (559)
Q Consensus 257 ----~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 310 (559)
..+..+++|++|++++|.+.+..+. ......+++|+.||+++|++.+..+....
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~ 305 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPIS 305 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHH
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHH
Confidence 3345667788888888874322111 01124677889999999998876555443
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=2.2e-23 Score=210.04 Aligned_cols=256 Identities=20% Similarity=0.302 Sum_probs=130.8
Q ss_pred CcccCeEeccCCcCCCccc----hhhcCCCCCCEEEcccCcCC---CCCCccC-------CCCCCccEEEeeCCcCCc--
Q 008628 95 NSTLETLDLRMNNFQGTIP----QTYAKGCNLSYLRLSGNHLE---GPLPPSL-------INCVKLHFLDVGNNNLSG-- 158 (559)
Q Consensus 95 ~~~L~~L~L~~n~~~~~~~----~~~~~l~~L~~L~L~~n~~~---~~~~~~l-------~~l~~L~~L~l~~n~l~~-- 158 (559)
+++|++|+|++|.+....+ ..+..+++|++|++++|.+. +.+|..+ ..+++|++|++++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 4445555555555443322 22445555555555554322 2223222 456666666666666655
Q ss_pred --ccchhccCCCCCCEEEccCCccccccCccccc--------------CccCEEEccCCcCC-CCcc---hhhcCCCCcc
Q 008628 159 --PIPEYLGNSTSLSFLNVRNNSLSGPIPECLGN--------------STLEILDMRMNKFS-GSLP---QTFAKSCVLV 218 (559)
Q Consensus 159 --~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------~~L~~L~l~~n~~~-~~~~---~~~~~~~~L~ 218 (559)
.+|..+..+++|++|++++|.+.+..+..+.. .+|+.|++++|.+. ...+ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 34555666666777777666665332222211 23555555555554 2222 3444555566
Q ss_pred EEEccCCcccc-----CCCccccCCCCCcEEEeecCccC----cccchhhcCCCCCcEEEcccccccccCCCCCCCCCCC
Q 008628 219 SLNLNGNRLEG-----PLPPSLVNCRHLEVIDVGNNQIN----ETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFP 289 (559)
Q Consensus 219 ~L~L~~n~~~~-----~~~~~l~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 289 (559)
+|++++|.++. ..+..+..+++|++|++++|.++ ..++..+..+++
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~------------------------- 245 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN------------------------- 245 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT-------------------------
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC-------------------------
Confidence 66666555541 12224445555555555555553 233444444444
Q ss_pred CceEEEccCccceeecChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccc
Q 008628 290 KLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQ 369 (559)
Q Consensus 290 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~ 369 (559)
|+.|++++|.+++.....+...+.. ..+++|++|++++|.++
T Consensus 246 -L~~L~L~~n~i~~~~~~~l~~~l~~-------------------------------------~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 246 -LRELGLNDCLLSARGAAAVVDAFSK-------------------------------------LENIGLQTLRLQYNEIE 287 (386)
T ss_dssp -CCEEECTTCCCCHHHHHHHHHHHHT-------------------------------------CSSCCCCEEECCSSCCB
T ss_pred -cCEEECCCCCCchhhHHHHHHHHhh-------------------------------------ccCCCeEEEECcCCcCC
Confidence 4444444444443311111111000 00466777888888877
Q ss_pred c----ccchhh-hcCCCCCEEEccCCcCCCCCC--ccc-cCCCCCCEEeCCC
Q 008628 370 G----EISQVL-GKLNSLKSLNISHNNLTGGIP--SSL-RNLTELESLDLSS 413 (559)
Q Consensus 370 ~----~~~~~~-~~l~~L~~L~Ls~n~l~~~~~--~~~-~~l~~L~~L~Ls~ 413 (559)
+ .+|..+ .++++|++|+|++|.+++..+ ..+ ..++.++.+++..
T Consensus 288 ~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 288 LDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred HHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 6 366666 668899999999998887663 222 2234444444433
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=8.3e-23 Score=201.88 Aligned_cols=250 Identities=16% Similarity=0.184 Sum_probs=141.8
Q ss_pred CccEEEeeeccCCcccCccCCCC--CCCCEEEcccCcCccccCccccCcccCeEeccCCcCCCc-cchhhcCCCCCCEEE
Q 008628 50 HMVELLISNNSLTGEIPSSFCNL--SSIQYLNLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGT-IPQTYAKGCNLSYLR 126 (559)
Q Consensus 50 ~L~~L~L~~n~i~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~ 126 (559)
.++.++++++.+. +..+..+ ++++.|++++|.+.+..+..+.+++|++|++++|.+.+. .+..+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 3555666655554 2333444 566666666666655544444466666666666665543 555566666666666
Q ss_pred cccCcCCCCCCccCCCCCCccEEEeeCC-cCCcc-cchhccCCCCCCEEEccCC-ccccc-cCccc-ccC-ccCEEEccC
Q 008628 127 LSGNHLEGPLPPSLINCVKLHFLDVGNN-NLSGP-IPEYLGNSTSLSFLNVRNN-SLSGP-IPECL-GNS-TLEILDMRM 200 (559)
Q Consensus 127 L~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~-~~~-~L~~L~l~~ 200 (559)
+++|.+.+..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+ ... +|+.|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 6666655555555566666666666666 44432 4444556666666666666 55532 22222 223 466666666
Q ss_pred C--cCC-CCcchhhcCCCCccEEEccCCc-cccCCCccccCCCCCcEEEeecCc-cCcccchhhcCCCCCcEEEcccccc
Q 008628 201 N--KFS-GSLPQTFAKSCVLVSLNLNGNR-LEGPLPPSLVNCRHLEVIDVGNNQ-INETFPHWLDVLPELQVLTLRSNRF 275 (559)
Q Consensus 201 n--~~~-~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l 275 (559)
| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++| +
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i 283 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V 283 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c
Confidence 6 333 3445566667777777777776 555556666777777777777773 33322234666777777777776 2
Q ss_pred cccCCCCCCCCCC-CCceEEEccCccceeecChH
Q 008628 276 RGPIGDTKTRVPF-PKLRIIDLSYNRFTGVLPIW 308 (559)
Q Consensus 276 ~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~ 308 (559)
. ... ...+ .+++.|++++|++++..|..
T Consensus 284 ~----~~~-~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 284 P----DGT-LQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp C----TTC-HHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred C----HHH-HHHHHhhCcceEEecccCccccCCc
Confidence 2 111 0111 22445556777777666643
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=190.34 Aligned_cols=201 Identities=23% Similarity=0.268 Sum_probs=115.6
Q ss_pred CcccCeEeccCCcCCCccchhh--cCCCCCCEEEcccCcCCCCCC----ccCCCCCCccEEEeeCCcCCcccchhccCCC
Q 008628 95 NSTLETLDLRMNNFQGTIPQTY--AKGCNLSYLRLSGNHLEGPLP----PSLINCVKLHFLDVGNNNLSGPIPEYLGNST 168 (559)
Q Consensus 95 ~~~L~~L~L~~n~~~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 168 (559)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3445555555555555555444 555555555555555554332 2233455555555555555555555555555
Q ss_pred CCCEEEccCCccccc--c--Ccccc-cCccCEEEccCCcCCCCcch----hhcCCCCccEEEccCCccccCCCccccCC-
Q 008628 169 SLSFLNVRNNSLSGP--I--PECLG-NSTLEILDMRMNKFSGSLPQ----TFAKSCVLVSLNLNGNRLEGPLPPSLVNC- 238 (559)
Q Consensus 169 ~L~~L~l~~n~l~~~--~--~~~~~-~~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~L~L~~n~~~~~~~~~l~~l- 238 (559)
+|++|++++|++.+. + +..+. ..+|++|++++|.++ .++. .+..+++|++|++++|.+++..|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 555555555554321 1 11111 223666666666654 2222 24566777777777777776666666555
Q ss_pred --CCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCcccee
Q 008628 239 --RHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTG 303 (559)
Q Consensus 239 --~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 303 (559)
++|++|++++|.++. +|..+. ++|++|++++|++++. +. ...+++|+.|++++|+++.
T Consensus 249 ~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~-~~---~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRA-PQ---PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCSC-CC---TTSCCCCSCEECSSTTTSC
T ss_pred CcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCCC-ch---hhhCCCccEEECcCCCCCC
Confidence 578888888887774 444442 6788888888887753 22 2456788888888887753
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=2.1e-20 Score=176.29 Aligned_cols=176 Identities=20% Similarity=0.230 Sum_probs=124.0
Q ss_pred cCCcEEEccCCcccccCCCCCCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCeEeccCC
Q 008628 28 KNLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMN 106 (559)
Q Consensus 28 ~~L~~L~Ls~n~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n 106 (559)
...++++++++.++...+....+++.|++++|.+++..+..|.++++|++|++++|.+.+..+..+. +++|++|++++|
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 4667888888888865555556888888888888877777788888888888888888766666666 778888888888
Q ss_pred cCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCc
Q 008628 107 NFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPE 186 (559)
Q Consensus 107 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 186 (559)
.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 87766667777777777777777777755555567777777777777777766555677777777777777666644433
Q ss_pred ccccC-ccCEEEccCCcC
Q 008628 187 CLGNS-TLEILDMRMNKF 203 (559)
Q Consensus 187 ~~~~~-~L~~L~l~~n~~ 203 (559)
.+... +|+.|++++|.+
T Consensus 174 ~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTTTCTTCCEEECCSCCB
T ss_pred HHhCCCCCCEEEeeCCce
Confidence 33222 244444444433
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=2.6e-20 Score=181.08 Aligned_cols=189 Identities=20% Similarity=0.329 Sum_probs=126.0
Q ss_pred cCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEccc
Q 008628 193 LEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRS 272 (559)
Q Consensus 193 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 272 (559)
|+.|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|++++
T Consensus 43 L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 43 ITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTS 116 (308)
T ss_dssp CCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTT
T ss_pred cCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCC
Confidence 4444444444432 22 34555566666666666654322 55666666666666666543 2455666666666666
Q ss_pred ccccccCCCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHH
Q 008628 273 NRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQME 352 (559)
Q Consensus 273 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 352 (559)
|.+.+..+ +..+++|++|++++|.+++..+ +.
T Consensus 117 n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~---l~----------------------------------------- 148 (308)
T 1h6u_A 117 TQITDVTP----LAGLSNLQVLYLDLNQITNISP---LA----------------------------------------- 148 (308)
T ss_dssp SCCCCCGG----GTTCTTCCEEECCSSCCCCCGG---GG-----------------------------------------
T ss_pred CCCCCchh----hcCCCCCCEEECCCCccCcCcc---cc-----------------------------------------
Confidence 66654321 3556677777777776654322 11
Q ss_pred HhhccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCe
Q 008628 353 RILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSV 432 (559)
Q Consensus 353 ~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 432 (559)
.+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|++.+..| +..+++|+.
T Consensus 149 -~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~ 221 (308)
T 1h6u_A 149 -GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFI 221 (308)
T ss_dssp -GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCE
T ss_pred -CCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCE
Confidence 16778888888888886544 7888999999999999886644 7888999999999999986553 788999999
Q ss_pred EeCcCCcccc
Q 008628 433 LNLSNNQLEG 442 (559)
Q Consensus 433 L~l~~n~l~~ 442 (559)
|++++|++++
T Consensus 222 L~l~~N~i~~ 231 (308)
T 1h6u_A 222 VTLTNQTITN 231 (308)
T ss_dssp EEEEEEEEEC
T ss_pred EEccCCeeec
Confidence 9999999875
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=4.8e-20 Score=182.78 Aligned_cols=198 Identities=16% Similarity=0.195 Sum_probs=118.4
Q ss_pred cEEEccCCcccccCCCCCCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCc-ccc-CcccCe-EeccCCc
Q 008628 31 EYLTLDSNLLQGSLPDLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ-CLG-NSTLET-LDLRMNN 107 (559)
Q Consensus 31 ~~L~Ls~n~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~-~~~L~~-L~L~~n~ 107 (559)
++++.+++.++..+.+.+.++++|+|++|+|+...+.+|+++++|++|+|++|.+.+.+|. .|. ++++++ +.+.+|.
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 4556666666533333344677777777777755566788888888888888887655554 444 666554 5556677
Q ss_pred CCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeC-CcCCcccchhccCCC-CCCEEEccCCccccccC
Q 008628 108 FQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGN-NNLSGPIPEYLGNST-SLSFLNVRNNSLSGPIP 185 (559)
Q Consensus 108 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~ 185 (559)
++...|..|..+++|++|++++|++....+..+....++..+++.+ +.+....+..|..+. .++.|++++|++....+
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~ 171 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN 171 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh
Confidence 7767777778888888888888887765555566666677777755 345544444455443 45666666666654433
Q ss_pred cccccCccCEEEccC-CcCCCCcchhhcCCCCccEEEccCCccc
Q 008628 186 ECLGNSTLEILDMRM-NKFSGSLPQTFAKSCVLVSLNLNGNRLE 228 (559)
Q Consensus 186 ~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~L~~n~~~ 228 (559)
..+...+++.+++.+ |.++...++.|..+++|+.|++++|+++
T Consensus 172 ~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 172 SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 333333355555543 3333222233444444444444444444
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=5.8e-20 Score=178.60 Aligned_cols=191 Identities=23% Similarity=0.319 Sum_probs=81.3
Q ss_pred CCCCCEEEcccCcCccccCccccCcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEe
Q 008628 72 LSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDV 151 (559)
Q Consensus 72 l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 151 (559)
+++|++|++++|.+. .++..-.+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ + ..+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~-~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCcc-CchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEEC
Confidence 444444444444443 22221114444444444444443322 4444444555554444442 1 23444445555555
Q ss_pred eCCcCCcccchhccCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCC
Q 008628 152 GNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPL 231 (559)
Q Consensus 152 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~ 231 (559)
++|.+.+. + .+..+++|++|++++|.+.+..+ ......|+.|++++|.+++..+ +..+++|+.|++++|.+++..
T Consensus 115 ~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 115 TSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp TTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcCh
Confidence 55544432 1 14444444555444444443211 1111224444444444432211 444445555555555444322
Q ss_pred CccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEccccccc
Q 008628 232 PPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFR 276 (559)
Q Consensus 232 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 276 (559)
+ +..+++|++|++++|.+++..+ +..+++|++|++++|++.
T Consensus 190 ~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 190 P--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp G--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred h--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 1 4444455555555554444332 444444445555444443
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=1.9e-19 Score=178.49 Aligned_cols=240 Identities=17% Similarity=0.125 Sum_probs=125.4
Q ss_pred CEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCc-cccc-Ccc-CEEEcc
Q 008628 123 SYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPE-CLGN-STL-EILDMR 199 (559)
Q Consensus 123 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~-~~L-~~L~l~ 199 (559)
++++.++++++ .+|..+ .+++++|+|++|+++...+.+|.++++|++|++++|.+.+.++. .+.. .++ +.+.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34555555555 445443 24566666666666644444566666666666666665433332 1111 111 123333
Q ss_pred CCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecC-ccCcccchhhcCCCCCcEEEccccccccc
Q 008628 200 MNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNN-QINETFPHWLDVLPELQVLTLRSNRFRGP 278 (559)
Q Consensus 200 ~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 278 (559)
.|.+....+..|..+++|++|++++|+++...+..+....++..+++.++ .+....+..|..+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~---------------- 152 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL---------------- 152 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTS----------------
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhc----------------
Confidence 34444333444555555555555555555444334444444444554432 3333333333222
Q ss_pred CCCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccc
Q 008628 279 IGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTF 358 (559)
Q Consensus 279 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 358 (559)
...++.|++++|+++...+..+ . ..++
T Consensus 153 ---------~~~l~~L~L~~N~i~~i~~~~f-~-------------------------------------------~~~L 179 (350)
T 4ay9_X 153 ---------SFESVILWLNKNGIQEIHNSAF-N-------------------------------------------GTQL 179 (350)
T ss_dssp ---------BSSCEEEECCSSCCCEECTTSS-T-------------------------------------------TEEE
T ss_pred ---------chhhhhhccccccccCCChhhc-c-------------------------------------------ccch
Confidence 2345556666666554332211 0 3456
Q ss_pred cEEEcCC-cccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEeCcC
Q 008628 359 ATIDLSS-NRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSN 437 (559)
Q Consensus 359 ~~L~ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~ 437 (559)
++|++++ |.++.+.+..|..+++|++|+|++|+++...+..| .+|+.|.+.++.-...+| .+.++++|+.+++++
T Consensus 180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 6677764 45554444567778888888888888875554443 445566655555455666 467778888888765
Q ss_pred C
Q 008628 438 N 438 (559)
Q Consensus 438 n 438 (559)
+
T Consensus 256 ~ 256 (350)
T 4ay9_X 256 P 256 (350)
T ss_dssp H
T ss_pred C
Confidence 4
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=5.3e-20 Score=168.25 Aligned_cols=178 Identities=21% Similarity=0.196 Sum_probs=99.7
Q ss_pred CEEECCCCCCCCCCcccccCCcEEEccCCcccccCCCCCCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCcccc
Q 008628 10 YFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQI 89 (559)
Q Consensus 10 ~~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 89 (559)
+.+++++++++++|....++|++|++++|.+. +..+..|+++++|++|++++|.+.+..
T Consensus 10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~---------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~ 68 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLK---------------------SLPNGVFDELTSLTQLYLGGNKLQSLP 68 (208)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCC---------------------CCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CEEEecCCCccCCCCCCCCCCcEEEcCCCccC---------------------cCChhhhcccccCcEEECCCCccCccC
Confidence 44555555555555555555555555555444 333444555666666666666665433
Q ss_pred Ccccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCC
Q 008628 90 PQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNST 168 (559)
Q Consensus 90 ~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 168 (559)
+..+. +++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..++
T Consensus 69 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 148 (208)
T 2o6s_A 69 NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC
Confidence 33344 56666666666666555555556666666666666666654444556666666666666666655555566666
Q ss_pred CCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCC
Q 008628 169 SLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKS 214 (559)
Q Consensus 169 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 214 (559)
+|+.|++++|.+.+.. ..++.|+++.|.++|.+|..++.+
T Consensus 149 ~L~~L~l~~N~~~~~~------~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 149 SLQYIWLHDNPWDCTC------PGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp TCCEEECCSCCBCCCT------TTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred CccEEEecCCCeecCC------CCHHHHHHHHHhCCceeeccCccc
Confidence 6666666666554322 124455555555555555544443
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.7e-19 Score=164.92 Aligned_cols=156 Identities=23% Similarity=0.282 Sum_probs=101.9
Q ss_pred CCccCEEECCCCCCCCCCcccc---cCCcEEEccCCcccccCCCCC---CCccEEEeeeccCCcccCccCCCCCCCCEEE
Q 008628 6 VHTLYFLDLSRNFLTSIDHLPW---KNLEYLTLDSNLLQGSLPDLP---PHMVELLISNNSLTGEIPSSFCNLSSIQYLN 79 (559)
Q Consensus 6 l~~L~~L~ls~n~~~~i~~~~~---~~L~~L~Ls~n~~~~~~~~~~---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 79 (559)
.++|++|++++|.++.++...+ ++|++|++++|.+++..+..+ .+|++|++++|.+++..+..|.++++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 4679999999999998877554 888888888888876544333 3666777777766655555566666777777
Q ss_pred cccCcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCc
Q 008628 80 LSNNSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSG 158 (559)
Q Consensus 80 L~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 158 (559)
+++|.+.+..+..+. +++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+++|++|++..|.+++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCc
Confidence 776666644444444 6666666666666665555556666666666666665442 34456666666666666
Q ss_pred ccchhccCCC
Q 008628 159 PIPEYLGNST 168 (559)
Q Consensus 159 ~~~~~~~~l~ 168 (559)
.+|..++.++
T Consensus 180 ~ip~~~~~l~ 189 (208)
T 2o6s_A 180 VVRNSAGSVA 189 (208)
T ss_dssp TBBCTTSSBC
T ss_pred eeeccCcccc
Confidence 6665555443
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=8.5e-19 Score=182.82 Aligned_cols=187 Identities=29% Similarity=0.420 Sum_probs=116.1
Q ss_pred CCcEEEccCCcccccCCCCCCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCccccCcccCeEeccCCcC
Q 008628 29 NLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLRMNNF 108 (559)
Q Consensus 29 ~L~~L~Ls~n~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~L~~n~~ 108 (559)
+|+.|++++|.+++..+..+++|+.|+|++|.++ .+| ..+++|++|++++|.+++ +|. +. .+|++|++++|.+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~~L~~L~Ls~N~l 132 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-ASLKHLDVDNNQL 132 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCSSCC
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-cCCCEEECCCCcC
Confidence 5566666666555532234445666666666665 344 335666666666666654 444 22 2666666666666
Q ss_pred CCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCccc
Q 008628 109 QGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECL 188 (559)
Q Consensus 109 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 188 (559)
++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+|. +
T Consensus 133 ~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~ 198 (571)
T 3cvr_A 133 TM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-V 198 (571)
T ss_dssp SC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-C
T ss_pred CC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-H
Confidence 64 333 45666667776666664 443 45667777777777665 444 44 66777777777766 3444 3
Q ss_pred ccCcc-------CEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCC
Q 008628 189 GNSTL-------EILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNC 238 (559)
Q Consensus 189 ~~~~L-------~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l 238 (559)
.. +| +.|++++|.++ .+|..+..+++|+.|++++|++++..|..+..+
T Consensus 199 ~~-~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 199 PV-RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp C---------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred HH-hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 33 55 88888888887 567777778888888888888888777766554
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=1.5e-18 Score=181.00 Aligned_cols=187 Identities=28% Similarity=0.423 Sum_probs=152.1
Q ss_pred CccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCccccCcccCeEeccCCcCCCccchhhcCCCCCCEEEccc
Q 008628 50 HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSG 129 (559)
Q Consensus 50 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 129 (559)
+++.|++++|.+++ +|..+ .++|++|++++|.+. .+| -.+++|++|++++|.+++ +|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 78999999999986 66655 378999999999998 667 227899999999999986 565 554 999999999
Q ss_pred CcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcch
Q 008628 130 NHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQ 209 (559)
Q Consensus 130 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 209 (559)
|.+++ +|. .+++|++|++++|.+++ +|. .+++|+.|++++|.+.+ +|. +. .+|+.|++++|.++ .+|.
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-~~L~~L~Ls~N~L~-~lp~ 197 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-ESLEALDVSTNLLE-SLPA 197 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCSSCCS-SCCC
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh-CCCCEEECcCCCCC-chhh
Confidence 99986 665 68899999999999986 554 57899999999999987 555 55 66999999999988 5565
Q ss_pred hhcCCCCc-------cEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCC
Q 008628 210 TFAKSCVL-------VSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVL 262 (559)
Q Consensus 210 ~~~~~~~L-------~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 262 (559)
+.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++..|..+..+
T Consensus 198 -~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 198 -VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp -CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred -HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 544 67 99999999998 567777779999999999999998888877654
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=9e-19 Score=174.31 Aligned_cols=172 Identities=23% Similarity=0.205 Sum_probs=95.0
Q ss_pred CEEECCCCCCCCCCcccccCCcEEEccCCcccccCCCCC----CCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcC
Q 008628 10 YFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLP----PHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSL 85 (559)
Q Consensus 10 ~~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~~~~~~~----~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~ 85 (559)
+.+++++++++.+|..+.+.++.|+|++|.+++..+..+ .+|+.|+|++|.+++..+..|.++++|++|+|++|.+
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 456666666666666666666666666666665544322 3566666666666655555566666666666666666
Q ss_pred ccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccC---CCCCCccEEEeeCCcCCcccc
Q 008628 86 SGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSL---INCVKLHFLDVGNNNLSGPIP 161 (559)
Q Consensus 86 ~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l---~~l~~L~~L~l~~n~l~~~~~ 161 (559)
....+..+. +++|++|+|++|.+++..|..|..+++|++|++++|.+....+..| ..+++|++|++++|.++...+
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 180 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH
Confidence 544444444 5566666666666555555555555566666666655553222222 345555555555555554443
Q ss_pred hhccCCCCC--CEEEccCCccc
Q 008628 162 EYLGNSTSL--SFLNVRNNSLS 181 (559)
Q Consensus 162 ~~~~~l~~L--~~L~l~~n~l~ 181 (559)
..+..++.+ +.|++.+|++.
T Consensus 181 ~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 181 TDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHHHSCHHHHTTEECCSSCEE
T ss_pred HHhhhccHhhcceEEecCCCcc
Confidence 444444432 44555554443
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=2.6e-18 Score=158.13 Aligned_cols=153 Identities=20% Similarity=0.193 Sum_probs=95.1
Q ss_pred CEEECCCCCCCCCCcccccCCcEEEccCCcccccCCCCCCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCcccc
Q 008628 10 YFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQI 89 (559)
Q Consensus 10 ~~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 89 (559)
+.+++++|.++++|..+.+.+++|++++|.+++..+ +..|.++++|++|++++|.+.+..
T Consensus 14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~--------------------~~~~~~l~~L~~L~L~~N~i~~i~ 73 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEA--------------------TGIFKKLPQLRKINFSNNKITDIE 73 (220)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECC--------------------CCCGGGCTTCCEEECCSSCCCEEC
T ss_pred CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCc--------------------hhhhccCCCCCEEECCCCcCCEEC
Confidence 355555555555555555555555555555544322 123555666666666666666544
Q ss_pred Ccccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCC
Q 008628 90 PQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNST 168 (559)
Q Consensus 90 ~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 168 (559)
+..+. +++|++|++++|.+++..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..|..++
T Consensus 74 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 153 (220)
T 2v70_A 74 EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCT
T ss_pred HHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCC
Confidence 44555 66666666666666666666666667777777777777666666667777777777777777666666677777
Q ss_pred CCCEEEccCCcccc
Q 008628 169 SLSFLNVRNNSLSG 182 (559)
Q Consensus 169 ~L~~L~l~~n~l~~ 182 (559)
+|+.|++++|++..
T Consensus 154 ~L~~L~L~~N~l~c 167 (220)
T 2v70_A 154 SLSTLNLLANPFNC 167 (220)
T ss_dssp TCCEEECCSCCEEC
T ss_pred CCCEEEecCcCCcC
Confidence 77777777776654
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=2.9e-18 Score=157.82 Aligned_cols=132 Identities=17% Similarity=0.247 Sum_probs=83.6
Q ss_pred CccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcc
Q 008628 50 HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLS 128 (559)
Q Consensus 50 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 128 (559)
+++.|++++|.+++..+..|.++++|++|++++|.+.+..|..+. +++|++|+|++|.++...+..|..+++|++|+++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 444444445555444444566666666666666666655555555 6666666666666665555556666677777777
Q ss_pred cCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccc
Q 008628 129 GNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLS 181 (559)
Q Consensus 129 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 181 (559)
+|.+.+..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++.
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 77766666666667777777777777776665566666777777777776664
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=2.5e-18 Score=158.22 Aligned_cols=153 Identities=17% Similarity=0.203 Sum_probs=133.6
Q ss_pred ccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCc-ccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcc
Q 008628 51 MVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ-CLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLS 128 (559)
Q Consensus 51 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 128 (559)
-+.+++++|.++ .+|..+. ..+++|++++|.+.+..+. .+. +++|++|++++|.+++..+..|..+++|++|+++
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 457888888887 4565553 4678999999999866453 455 9999999999999998888899999999999999
Q ss_pred cCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCcccccCc-cCEEEccCCcCCCC
Q 008628 129 GNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNST-LEILDMRMNKFSGS 206 (559)
Q Consensus 129 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~ 206 (559)
+|.+.+..+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+.+..|..+.... |+.|++++|.+...
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 9999987778899999999999999999988899999999999999999999988888877655 99999999988754
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=3.3e-18 Score=157.45 Aligned_cols=149 Identities=19% Similarity=0.184 Sum_probs=136.6
Q ss_pred CEEECCCCCCCCCCcccccCCcEEEccCCcccccCCCCCC---CccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCc
Q 008628 10 YFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLPP---HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS 86 (559)
Q Consensus 10 ~~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~~~~~~~~---~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~ 86 (559)
+.+++++++++++|..+.++|+.|++++|.+.+..+..+. +|+.|+|++|.+++..|..|.++++|++|+|++|.+.
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 6799999999999999889999999999999987765544 8999999999999888999999999999999999998
Q ss_pred cccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCc
Q 008628 87 GQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSG 158 (559)
Q Consensus 87 ~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 158 (559)
...+..+. +++|++|+|++|.+++..|..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+..
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 65555566 9999999999999999999999999999999999999998777889999999999999998863
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=4.4e-18 Score=163.80 Aligned_cols=172 Identities=23% Similarity=0.321 Sum_probs=129.4
Q ss_pred cCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCc
Q 008628 212 AKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKL 291 (559)
Q Consensus 212 ~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L 291 (559)
..+++|+.|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|++.+.. . ...+++|
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-~---l~~l~~L 114 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS-S---LKDLKKL 114 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG-G---GTTCTTC
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh-h---hccCCCC
Confidence 3456677777777776643 2 36667777777777777766544 667777777777777766422 1 3567788
Q ss_pred eEEEccCccceeecChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccccc
Q 008628 292 RIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGE 371 (559)
Q Consensus 292 ~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~ 371 (559)
++|++++|++++. + . +. .+++|++|++++|.+++.
T Consensus 115 ~~L~L~~n~i~~~-~-~-l~------------------------------------------~l~~L~~L~l~~n~l~~~ 149 (291)
T 1h6t_A 115 KSLSLEHNGISDI-N-G-LV------------------------------------------HLPQLESLYLGNNKITDI 149 (291)
T ss_dssp CEEECTTSCCCCC-G-G-GG------------------------------------------GCTTCCEEECCSSCCCCC
T ss_pred CEEECCCCcCCCC-h-h-hc------------------------------------------CCCCCCEEEccCCcCCcc
Confidence 8888888877643 1 0 00 167889999999998875
Q ss_pred cchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEeCcCCcccc
Q 008628 372 ISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEG 442 (559)
Q Consensus 372 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 442 (559)
..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. | .+..+++|+.|++++|+++.
T Consensus 150 --~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 150 --TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred --hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 568899999999999999987665 88999999999999999864 4 48899999999999999885
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.5e-17 Score=154.14 Aligned_cols=154 Identities=19% Similarity=0.203 Sum_probs=107.9
Q ss_pred CCcEEEccCCcccccCCCCCCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCeEeccCCc
Q 008628 29 NLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMNN 107 (559)
Q Consensus 29 ~L~~L~Ls~n~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n~ 107 (559)
.-+.++++++.+.......+.+|++|+|++|.+++..+..|.++++|++|++++|.+....+..+. +++|++|+|++|.
T Consensus 20 s~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred eCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 344566666655544434445666666666666666666777777777777777777644444455 7777777777777
Q ss_pred CCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccc
Q 008628 108 FQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGP 183 (559)
Q Consensus 108 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 183 (559)
+++..+..|..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++.+|++...
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 77666666777778888888888777 5677777778888888888877766666677777888888877777643
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=6.1e-18 Score=168.30 Aligned_cols=154 Identities=21% Similarity=0.179 Sum_probs=110.5
Q ss_pred CCcEEEccCCcccccCCCCCCCccEEEeeeccCCcccCccCC-CCCCCCEEEcccCcCccccCcccc-CcccCeEeccCC
Q 008628 29 NLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTGEIPSSFC-NLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMN 106 (559)
Q Consensus 29 ~L~~L~Ls~n~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n 106 (559)
.-++++++++.+.......+..++.|+|++|.+++..+..+. ++++|++|+|++|.+.+..+..+. +++|++|+|++|
T Consensus 19 ~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 19 ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp ETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 346788888888765444455788888888888877777776 788888888888888766666666 777888888888
Q ss_pred cCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhc---cCCCCCCEEEccCCcccc
Q 008628 107 NFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYL---GNSTSLSFLNVRNNSLSG 182 (559)
Q Consensus 107 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~ 182 (559)
.++...+..|..+++|++|++++|.+....+..|..+++|++|+|++|.++...+..| ..+++|+.|++++|.+.+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 8776666677777777777777777776666777777777777777777775444444 446666666666666654
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=2.4e-17 Score=152.78 Aligned_cols=151 Identities=19% Similarity=0.138 Sum_probs=136.1
Q ss_pred cCEEECCCCCCCCCCcccccCCcEEEccCCcccccCCCCCC---CccEEEeeeccCCcccCccCCCCCCCCEEEcccCcC
Q 008628 9 LYFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLPP---HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSL 85 (559)
Q Consensus 9 L~~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~~~~~~~~---~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~ 85 (559)
-+.+++++++++.+|..+.++|++|++++|.+.+..+..+. +|++|+|++|.++...+..|.++++|++|+|++|.+
T Consensus 21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 46799999999999999999999999999999988776554 899999999999977777889999999999999999
Q ss_pred ccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCccc
Q 008628 86 SGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPI 160 (559)
Q Consensus 86 ~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 160 (559)
.+..+..+. +++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 976666676 999999999999999 67888999999999999999999776678999999999999999987543
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.3e-17 Score=175.75 Aligned_cols=191 Identities=22% Similarity=0.256 Sum_probs=117.8
Q ss_pred CCCCEEEcccCcCccccCccccCcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEee
Q 008628 73 SSIQYLNLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVG 152 (559)
Q Consensus 73 ~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 152 (559)
..+..+++..+.+....+ .-.+.+|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +..+++|++|+|+
T Consensus 21 ~~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 344445555555543222 22267777777777777643 2 46777777777777777775433 6777777777777
Q ss_pred CCcCCcccchhccCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCC
Q 008628 153 NNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLP 232 (559)
Q Consensus 153 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~ 232 (559)
+|.+.+. ..+..+++|+.|++++|.+.+ ++.......|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+..|
T Consensus 96 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 96 ENKIKDL--SSLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SSCCCCC--TTSTTCTTCCEEECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCCCC--hhhccCCCCCEEEecCCCCCC-CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 7777642 256777777777777777764 33333334466666666666643 455666666666666666665443
Q ss_pred ccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccc
Q 008628 233 PSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRG 277 (559)
Q Consensus 233 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 277 (559)
+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++.+
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 56666666666666666553 235566666666666666553
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=5.2e-17 Score=156.27 Aligned_cols=170 Identities=25% Similarity=0.291 Sum_probs=77.1
Q ss_pred CCCCCCEEEcccCcCccccCccccCcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEE
Q 008628 71 NLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLD 150 (559)
Q Consensus 71 ~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 150 (559)
.+++|++|++++|.+. .++..-.+++|++|++++|.+++..+ +..+++|++|++++|.+.+ + ..+..+++|++|+
T Consensus 44 ~l~~L~~L~l~~~~i~-~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEE
T ss_pred hcCcccEEEccCCCcc-cChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEE
Confidence 3445555555555444 22221114455555555555443322 4445555555555554442 1 2244455555555
Q ss_pred eeCCcCCcccchhccCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccC
Q 008628 151 VGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGP 230 (559)
Q Consensus 151 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 230 (559)
+++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++.
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-------------------------~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI-------------------------TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-------------------------GGGGGCTTCSEEECCSSCCCCC
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-------------------------hhhccCCCCCEEEccCCccccc
Confidence 555544432 2344444444444444444422 2334444444444444444433
Q ss_pred CCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEccccccc
Q 008628 231 LPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFR 276 (559)
Q Consensus 231 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 276 (559)
.+ +..+++|++|++++|.+++. + .+..+++|+.|++++|++.
T Consensus 172 ~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 172 VP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred hh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 22 44445555555555544432 1 2445555555555555543
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=1e-17 Score=176.73 Aligned_cols=189 Identities=20% Similarity=0.245 Sum_probs=87.7
Q ss_pred cCCcEEEccCCcccccCC-CCCCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCeEeccC
Q 008628 28 KNLEYLTLDSNLLQGSLP-DLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRM 105 (559)
Q Consensus 28 ~~L~~L~Ls~n~~~~~~~-~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~ 105 (559)
.++..+.++.+.+.+..+ ..+.+|+.|++++|.+... + .++.+++|+.|+|++|.+.+..+ +. +++|+.|+|++
T Consensus 21 ~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 334444444444443222 1122455555555555422 2 34455555555555555543222 22 55555555555
Q ss_pred CcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccC
Q 008628 106 NNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIP 185 (559)
Q Consensus 106 n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 185 (559)
|.+.+. ..+..+++|++|+|++|.+.+. ..+..+++|+.|+|++|.+.+. ..+..+++|
T Consensus 97 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L--------------- 155 (605)
T 1m9s_A 97 NKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL--------------- 155 (605)
T ss_dssp SCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTC---------------
T ss_pred CCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCC---------------
Confidence 554431 1344455555555555554421 2344445555555555544432 334444444
Q ss_pred cccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCc
Q 008628 186 ECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINE 253 (559)
Q Consensus 186 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 253 (559)
+.|+|++|.+.+..| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+
T Consensus 156 --------~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 156 --------DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp --------SEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred --------CEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 455555554443333 44555555555555555532 235555555555555555443
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=1.5e-17 Score=149.50 Aligned_cols=115 Identities=21% Similarity=0.341 Sum_probs=95.8
Q ss_pred hccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEe
Q 008628 355 LTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN 434 (559)
Q Consensus 355 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 434 (559)
+++|++|++++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 67889999999999988899999999999999999999999998999999999999999999999999999999999999
Q ss_pred CcCCccccCCCCCCCCCccCCccccCCCCCCCCCC
Q 008628 435 LSNNQLEGPIPEGPQFNTFANDSYSGNSGLCGFPL 469 (559)
Q Consensus 435 l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~ 469 (559)
+++|++.|.++.......+....+.++...|+.|.
T Consensus 133 L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 133 LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp CTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred eCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence 99999999887432222233334445555566553
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=7.2e-17 Score=152.78 Aligned_cols=169 Identities=19% Similarity=0.210 Sum_probs=111.1
Q ss_pred CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEE
Q 008628 95 NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLN 174 (559)
Q Consensus 95 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 174 (559)
+.++..++++++.+++.. .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 455666677777766433 46667777777777777763 44 56777777888887777775543 77777788888
Q ss_pred ccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcc
Q 008628 175 VRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINET 254 (559)
Q Consensus 175 l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 254 (559)
+++|.+.+. +.... ..|+.|++++|.+++. ..+..+++|+.|++++|++++. + .+..+++|++|++++|.+++.
T Consensus 92 L~~N~l~~l-~~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 92 VNRNRLKNL-NGIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CCSSCCSCC-TTCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCCccCCc-Ccccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 887777753 33222 4577777777776642 2466677777777777777643 2 566667777777777766655
Q ss_pred cchhhcCCCCCcEEEcccccccc
Q 008628 255 FPHWLDVLPELQVLTLRSNRFRG 277 (559)
Q Consensus 255 ~~~~~~~l~~L~~L~L~~n~l~~ 277 (559)
..+..+++|+.|++++|++.+
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEEC
T ss_pred --HHhccCCCCCEEeCCCCcccC
Confidence 445666666666666666653
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=3.7e-17 Score=154.77 Aligned_cols=167 Identities=20% Similarity=0.278 Sum_probs=103.3
Q ss_pred cCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEccc
Q 008628 193 LEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRS 272 (559)
Q Consensus 193 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 272 (559)
+..++++++.+++. + .+..+++|+.|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 21 l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 45555666666532 2 45556666666666666653 23 45566666666666666655443 55566666666666
Q ss_pred ccccccCCCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHH
Q 008628 273 NRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQME 352 (559)
Q Consensus 273 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 352 (559)
|++.+.. ...
T Consensus 95 N~l~~l~-~~~--------------------------------------------------------------------- 104 (263)
T 1xeu_A 95 NRLKNLN-GIP--------------------------------------------------------------------- 104 (263)
T ss_dssp SCCSCCT-TCC---------------------------------------------------------------------
T ss_pred CccCCcC-ccc---------------------------------------------------------------------
Confidence 6554321 110
Q ss_pred HhhccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCe
Q 008628 353 RILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSV 432 (559)
Q Consensus 353 ~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 432 (559)
.++|++|++++|.+++. +.+..+++|++|+|++|++++. + .+..+++|++|++++|.+.+. ..+..+++|+.
T Consensus 105 --~~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~ 176 (263)
T 1xeu_A 105 --SACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNW 176 (263)
T ss_dssp --CSSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCE
T ss_pred --cCcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCE
Confidence 13455566666666543 2366777777777777777754 2 567777777888887777765 46777778888
Q ss_pred EeCcCCccccC
Q 008628 433 LNLSNNQLEGP 443 (559)
Q Consensus 433 L~l~~n~l~~~ 443 (559)
|++++|++++.
T Consensus 177 L~l~~N~~~~~ 187 (263)
T 1xeu_A 177 IDLTGQKCVNE 187 (263)
T ss_dssp EEEEEEEEECC
T ss_pred EeCCCCcccCC
Confidence 88888877754
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=3.7e-16 Score=141.21 Aligned_cols=64 Identities=14% Similarity=0.164 Sum_probs=28.1
Q ss_pred chhhcCCCCccEEEccCCc-cccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccc
Q 008628 208 PQTFAKSCVLVSLNLNGNR-LEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRF 275 (559)
Q Consensus 208 ~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 275 (559)
+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.+++.. .+..+++|++|++++|++
T Consensus 129 ~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 129 LTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp HHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred HHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence 3344444444444444444 32 222 3444445555555555444322 344455555555555544
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=3.9e-16 Score=141.04 Aligned_cols=152 Identities=16% Similarity=0.222 Sum_probs=79.6
Q ss_pred CCCCCCEEEcccCcCccccCccccCcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEE
Q 008628 71 NLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLD 150 (559)
Q Consensus 71 ~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 150 (559)
.+++|++|++++|.+. .+|..-.+++|++|++++|.+.. +..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCTTGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCCCcc-ChHHHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 3455555555555554 33321125555555555554432 12455556666666666665544555566666666666
Q ss_pred eeCCcCCcccchhccCCCCCCEEEccCCc-cccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCcccc
Q 008628 151 VGNNNLSGPIPEYLGNSTSLSFLNVRNNS-LSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEG 229 (559)
Q Consensus 151 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~ 229 (559)
+++|.+++..+..+..+++|++|++++|. +. .+ + .+..+++|+.|++++|.+++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~-----------------------~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DI-----------------------M-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CC-----------------------G-GGGGCSSCCEEECTTBCCCC
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-cc-----------------------H-hhcCCCCCCEEECCCCCCcC
Confidence 66666655555555666666666665555 32 22 2 34455555566666555553
Q ss_pred CCCccccCCCCCcEEEeecCccC
Q 008628 230 PLPPSLVNCRHLEVIDVGNNQIN 252 (559)
Q Consensus 230 ~~~~~l~~l~~L~~L~l~~n~l~ 252 (559)
. + .+..+++|++|++++|.+.
T Consensus 174 ~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 174 Y-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp C-T-TGGGCSSCCEEEECBC---
T ss_pred h-H-HhccCCCCCEEEeeCcccC
Confidence 2 2 4555566666666666553
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=2.3e-17 Score=178.39 Aligned_cols=187 Identities=24% Similarity=0.228 Sum_probs=116.7
Q ss_pred cCCcEEEccCCcccccCCCCCC-------CccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc-CcccC
Q 008628 28 KNLEYLTLDSNLLQGSLPDLPP-------HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLE 99 (559)
Q Consensus 28 ~~L~~L~Ls~n~~~~~~~~~~~-------~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~ 99 (559)
+.++.|+|.+|.+.......+. .+..++++.|.+. ..+..+..+++|+.|+|++|.+. .+|..+. +++|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCC
Confidence 4556666666655542211111 1222344444444 55778889999999999999998 5665555 99999
Q ss_pred eEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCc
Q 008628 100 TLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNS 179 (559)
Q Consensus 100 ~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 179 (559)
+|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..|+++++|++|+|++|.+. .+|..|..+++|++|+|++|.
T Consensus 251 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 251 RLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSC
T ss_pred EEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCc
Confidence 9999999999 78888999999999999999998 77999999999999999999987 667789999999999999999
Q ss_pred cccccCcccccCc--cCEEEccCCcCCCCcchhhcCCCCccEEEccCC
Q 008628 180 LSGPIPECLGNST--LEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGN 225 (559)
Q Consensus 180 l~~~~~~~~~~~~--L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n 225 (559)
+.+.+|..+.... ...+++++|.+++.+|.. |+.|+++.|
T Consensus 328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred cCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence 9988887776544 345678888888776653 445556555
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=8.8e-19 Score=183.72 Aligned_cols=205 Identities=18% Similarity=0.121 Sum_probs=137.3
Q ss_pred CCCCCCCEEEcccCcCccccCcccc-CcccCeEeccCCc-------------CCCccchhhcCCCCCCEEE-cccCcCCC
Q 008628 70 CNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMNN-------------FQGTIPQTYAKGCNLSYLR-LSGNHLEG 134 (559)
Q Consensus 70 ~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n~-------------~~~~~~~~~~~l~~L~~L~-L~~n~~~~ 134 (559)
..+++|+.|+|++|.+. .+|..++ +++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 45777778888888775 6677776 7778877776654 3344455555555555555 333322
Q ss_pred CCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCC
Q 008628 135 PLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKS 214 (559)
Q Consensus 135 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 214 (559)
..|+.+.+++|.+....+ ..|+.|++++|.+.+ +|.......|+.|++++|.++ .+|..+..+
T Consensus 423 ---------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 485 (567)
T 1dce_A 423 ---------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLR-ALPPALAAL 485 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCCGGGGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred ---------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcCccccccCcEeecCccccc-ccchhhhcC
Confidence 123333444444432211 247788888888875 455333344888888888887 677788888
Q ss_pred CCccEEEccCCccccCCCccccCCCCCcEEEeecCccCccc-chhhcCCCCCcEEEcccccccccCCCCCC-CCCCCCce
Q 008628 215 CVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETF-PHWLDVLPELQVLTLRSNRFRGPIGDTKT-RVPFPKLR 292 (559)
Q Consensus 215 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~l~~L~ 292 (559)
++|+.|++++|.+++ +| .+..+++|++|++++|.+++.. |..+..+++|+.|++++|++.+..+.... ...+++|+
T Consensus 486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~ 563 (567)
T 1dce_A 486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 563 (567)
T ss_dssp TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence 888888888888886 45 7888888888888888888776 77888888888888888888776553321 12367777
Q ss_pred EEEc
Q 008628 293 IIDL 296 (559)
Q Consensus 293 ~L~l 296 (559)
.|++
T Consensus 564 ~L~l 567 (567)
T 1dce_A 564 SILT 567 (567)
T ss_dssp EEEC
T ss_pred ccCC
Confidence 7753
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=2e-16 Score=155.24 Aligned_cols=248 Identities=12% Similarity=0.098 Sum_probs=157.4
Q ss_pred CCCCCEEEccCCccc--cccCcccccCccCEEEccCCcCCCCcchhhcC--------CCCccEEEccCCccccCCCcccc
Q 008628 167 STSLSFLNVRNNSLS--GPIPECLGNSTLEILDMRMNKFSGSLPQTFAK--------SCVLVSLNLNGNRLEGPLPPSLV 236 (559)
Q Consensus 167 l~~L~~L~l~~n~l~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--------~~~L~~L~L~~n~~~~~~~~~l~ 236 (559)
+++|+.|+|++|++. ...+..+.. +..+.+..+.+ .+..|.+ +++|+++++.+ .++.+...+|.
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~--~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~ 121 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPN--GKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK 121 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGG--GCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred hccCeEEecCcceeEEecCccccccc--ccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence 556666666666655 111111111 23344444422 2344555 88899999988 77777777888
Q ss_pred CCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccC--CCCCCCCCCCCce-EEEccCccceeecChHhhhc-
Q 008628 237 NCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPI--GDTKTRVPFPKLR-IIDLSYNRFTGVLPIWYLNG- 312 (559)
Q Consensus 237 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~- 312 (559)
+|++|+.+++++|.+..+.+.+|..+.++.++....+...... -....+..+..|+ .+++.... .++...+..
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~ 198 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAG 198 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTT
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcc
Confidence 9999999999988888888888888777777776664321100 1112233455555 44443321 111111111
Q ss_pred --ccccccccCCCCcccccccccccceeeeEEeecCchhh-HHHhhccccEEEcCCcccccccchhhhcCCCCCEEEccC
Q 008628 313 --FKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQ-MERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISH 389 (559)
Q Consensus 313 --l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 389 (559)
...+..+..... +. ..... ....+++|+.+++++|.++.+.+.+|.++++|++|+|.+
T Consensus 199 ~~~~~~~~l~~~~~----l~---------------~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ 259 (329)
T 3sb4_A 199 LQPRDINFLTIEGK----LD---------------NADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH 259 (329)
T ss_dssp CCGGGCSEEEEEEC----CC---------------HHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT
T ss_pred cCccccceEEEeee----ec---------------HHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc
Confidence 111111111000 00 00011 112278999999999999988888899999999999999
Q ss_pred CcCCCCCCccccCCCCCC-EEeCCCCcCCccCcccccCCCCCCeEeCcCCccccCC
Q 008628 390 NNLTGGIPSSLRNLTELE-SLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPI 444 (559)
Q Consensus 390 n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 444 (559)
| ++.+.+.+|.++++|+ .+++.+ .+..+.+..|.++++|+.+++++|.+...-
T Consensus 260 n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 260 N-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLG 313 (329)
T ss_dssp T-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEEC
T ss_pred c-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccc
Confidence 8 8878888999999999 999998 777777889999999999999998887543
No 121
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.64 E-value=1.4e-14 Score=145.11 Aligned_cols=265 Identities=10% Similarity=0.078 Sum_probs=157.9
Q ss_pred CccCEEECCCCCCCCCCcccc--cCCcEEEccCCcccccCCCCCC--CccEEEeeeccCCcccCccCCCCCCCCEEEccc
Q 008628 7 HTLYFLDLSRNFLTSIDHLPW--KNLEYLTLDSNLLQGSLPDLPP--HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSN 82 (559)
Q Consensus 7 ~~L~~L~ls~n~~~~i~~~~~--~~L~~L~Ls~n~~~~~~~~~~~--~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 82 (559)
..++.+.+. +.++.|+...| .+|+.+++..+ +.......|. +|+.+.+.+ .+......+|.+|++|+.+++.+
T Consensus 113 ~~l~~i~ip-~~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 113 KGYNEIILP-NSVKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK 189 (401)
T ss_dssp SSCSEEECC-TTCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTT
T ss_pred CCccEEEEC-CccCEehHhhcccCCccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCC
Confidence 445555555 34555655555 56777776655 4333333332 566666664 45555556666777777777776
Q ss_pred CcCccccCccccCcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccch
Q 008628 83 NSLSGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPE 162 (559)
Q Consensus 83 n~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 162 (559)
|.+.......|.+.+|+.+.+..+ ++.....+|.++.+|+.+++..+ +..+-..+|.+ .+|+.+.+.+ .++.....
T Consensus 190 n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~ 265 (401)
T 4fdw_A 190 TKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASR 265 (401)
T ss_dssp SCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTT
T ss_pred CcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChh
Confidence 666644444444666666666633 55455566666666666666653 33333445555 5666666643 34434455
Q ss_pred hccCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCc
Q 008628 163 YLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLE 242 (559)
Q Consensus 163 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 242 (559)
+|.++++|+.+.+.++.+.. +......+..|..+++|+.+++.+ .++.+...+|.+|.+|+
T Consensus 266 aF~~c~~L~~l~l~~~~~~~------------------~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFND------------------DPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVT 326 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCC------------------CTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCC
T ss_pred HhhCCCCCCEEEeCCccccC------------------CcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCcc
Confidence 66666666666665554430 001123445677778888888874 46666667788888888
Q ss_pred EEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCC-CCceEEEccCccc
Q 008628 243 VIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPF-PKLRIIDLSYNRF 301 (559)
Q Consensus 243 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l-~~L~~L~l~~n~l 301 (559)
.+++..+ ++.+...+|.++ +|+.+++.+|.........+ ..+ ..++.|.+..+.+
T Consensus 327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F--~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVW--YGFPDDITVIRVPAESV 382 (401)
T ss_dssp EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSC--CCSCTTCCEEEECGGGH
T ss_pred EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccc--cCCCCCccEEEeCHHHH
Confidence 8888554 666667778787 88888888877654333332 344 3677777766654
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=2.5e-19 Score=187.80 Aligned_cols=196 Identities=21% Similarity=0.175 Sum_probs=101.5
Q ss_pred CCccCEEECCCCCCCCCCcccc--cCCcEEEccCCcccccCCCCCCCccEEEeeeccCCcccCccCCCCCCCCEEE-ccc
Q 008628 6 VHTLYFLDLSRNFLTSIDHLPW--KNLEYLTLDSNLLQGSLPDLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLN-LSN 82 (559)
Q Consensus 6 l~~L~~L~ls~n~~~~i~~~~~--~~L~~L~Ls~n~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~-L~~ 82 (559)
+++|+.|+|++|.++.+|..+. ++|+.|++++|......+.. +..+...+..|..++++++|+.|+ ++.
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l--------l~~~~~~~~~~~~l~~l~~L~~L~~l~~ 419 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL--------MRALDPLLYEKETLQYFSTLKAVDPMRA 419 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH--------HHHHCTGGGHHHHHHHHHHHHHHCGGGH
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHH--------HHhcccccCCHHHHHHHHhcccCcchhh
Confidence 4455555555555555554443 55555555443321111100 011123344555555666666665 444
Q ss_pred CcCccccCccccCcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccch
Q 008628 83 NSLSGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPE 162 (559)
Q Consensus 83 n~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 162 (559)
|.+ ..|+.+.+++|.++...+ ..|++|++++|.+++ +|. ++.+++|++|++++|.++ .+|.
T Consensus 420 n~~----------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~ 480 (567)
T 1dce_A 420 AYL----------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPP 480 (567)
T ss_dssp HHH----------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCG
T ss_pred ccc----------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccch
Confidence 432 233444444444442211 247777777777774 554 777777777777777777 5667
Q ss_pred hccCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCc-chhhcCCCCccEEEccCCcccc
Q 008628 163 YLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSL-PQTFAKSCVLVSLNLNGNRLEG 229 (559)
Q Consensus 163 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~L~~n~~~~ 229 (559)
.+..+++|+.|++++|.+++ +|......+|+.|++++|.+++.. |..+..+++|+.|++++|.+++
T Consensus 481 ~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 481 ALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp GGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred hhhcCCCCCEEECCCCCCCC-CcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 77777777777777777664 332111222444444444444333 4444444445555555544443
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=8e-16 Score=150.97 Aligned_cols=197 Identities=15% Similarity=0.107 Sum_probs=121.2
Q ss_pred CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCc----CCcccchhccCCCC-
Q 008628 95 NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNN----LSGPIPEYLGNSTS- 169 (559)
Q Consensus 95 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~----l~~~~~~~~~~l~~- 169 (559)
+++|+.++|.+ .++...+.+|.++++|+.+++.+|.+..+.+.+|..+.++..+..+.+. ........|..+..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 45555555555 5554455555555666666665555554444555555544444443311 11111122333333
Q ss_pred -------------------------CCEEEccCCccccccCccc-ccCccCEEEccCCcCCCCcchhhcCCCCccEEEcc
Q 008628 170 -------------------------LSFLNVRNNSLSGPIPECL-GNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLN 223 (559)
Q Consensus 170 -------------------------L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 223 (559)
++.+.+.++-......... ...+|+.+++++|.++...+..|.++.+|+++++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 3333333321110000001 13458889998888886667788888899999998
Q ss_pred CCccccCCCccccCCCCCc-EEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEc
Q 008628 224 GNRLEGPLPPSLVNCRHLE-VIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDL 296 (559)
Q Consensus 224 ~n~~~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l 296 (559)
+| ++.+.+.+|.+|.+|+ .+++.+ .++.+.+.+|.++++|+++++++|.+.......+ ..+++|+.+..
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF--~~~~~L~~ly~ 328 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELF--GNGVPSKLIYK 328 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTT--CTTCCCCEEEC
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhh--cCCcchhhhcc
Confidence 87 7767778889999998 999988 7777778888899999999998888775554444 67888888763
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=1.5e-15 Score=136.46 Aligned_cols=89 Identities=24% Similarity=0.338 Sum_probs=38.3
Q ss_pred CCCCCCCCEEEcccCcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCcc
Q 008628 69 FCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLH 147 (559)
Q Consensus 69 ~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 147 (559)
|+++++|++|++++|.+.+..|..+. +++|++|++++|.+++..+..|..+++|++|++++|++.+..|..+..+++|+
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 44444444444444444433333333 44444444444444433333344444444444444444433344444444444
Q ss_pred EEEeeCCcCC
Q 008628 148 FLDVGNNNLS 157 (559)
Q Consensus 148 ~L~l~~n~l~ 157 (559)
+|++++|.+.
T Consensus 130 ~L~L~~N~l~ 139 (192)
T 1w8a_A 130 SLNLASNPFN 139 (192)
T ss_dssp EEECTTCCBC
T ss_pred EEEeCCCCcc
Confidence 4444444433
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=9.4e-16 Score=137.75 Aligned_cols=91 Identities=26% Similarity=0.284 Sum_probs=85.1
Q ss_pred hccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEe
Q 008628 355 LTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN 434 (559)
Q Consensus 355 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 434 (559)
+++|++|++++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|+.|+|++|.+....+..|..+++|+.|+
T Consensus 53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 67889999999999988888899999999999999999999999999999999999999999987777899999999999
Q ss_pred CcCCccccCCC
Q 008628 435 LSNNQLEGPIP 445 (559)
Q Consensus 435 l~~n~l~~~~p 445 (559)
+++|++.|.++
T Consensus 133 L~~N~~~C~c~ 143 (193)
T 2wfh_A 133 IGANPLYCDCN 143 (193)
T ss_dssp CCSSCEECSGG
T ss_pred eCCCCeecCCc
Confidence 99999998875
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=8.2e-17 Score=174.09 Aligned_cols=209 Identities=20% Similarity=0.216 Sum_probs=119.8
Q ss_pred CccCEEECCCCCCCCCCcccccCCcEEEccCCcccc---------cCCCCC---CCccEEEeeeccCCcccCccCCCCCC
Q 008628 7 HTLYFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQG---------SLPDLP---PHMVELLISNNSLTGEIPSSFCNLSS 74 (559)
Q Consensus 7 ~~L~~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~---------~~~~~~---~~L~~L~L~~n~i~~~~~~~~~~l~~ 74 (559)
+.++.|+|++|.+..++.... +.++|+.+.+.+ ..++.+ ..|+.|+|++|.+. .+|..+.++++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l---~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALL---QHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred CccceEEeeCCCCCcchhhHh---hcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence 557889999988876554433 333344433322 223333 38999999999998 67777779999
Q ss_pred CCEEEcccCcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeC
Q 008628 75 IQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGN 153 (559)
Q Consensus 75 L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 153 (559)
|++|+|++|.+. .+|..+. +++|++|+|++|.++ .+|..|+.+++|++|+|++|.+. .+|..|+.+++|++|+|++
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 999999999998 7888887 999999999999999 77999999999999999999998 7888899999999999999
Q ss_pred CcCCcccchhccCCCC-CCEEEccCCccccccCcccccCccCEEEccCC--------cCCCCcchhhcCCCCccEEEccC
Q 008628 154 NNLSGPIPEYLGNSTS-LSFLNVRNNSLSGPIPECLGNSTLEILDMRMN--------KFSGSLPQTFAKSCVLVSLNLNG 224 (559)
Q Consensus 154 n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n--------~~~~~~~~~~~~~~~L~~L~L~~ 224 (559)
|.+.+.+|..+..+.. +..+++.+|.+.+.+|.. ++.|+++.| .+.+..+..+..+..+....+++
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~-----l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~ 400 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE-----RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSY 400 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------------------------------------
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCccc-----cceeEeecccccccccCCccccccchhhcccccceeeeec
Confidence 9999988887755422 234788999998877764 455666655 22222333334444444455555
Q ss_pred Ccc
Q 008628 225 NRL 227 (559)
Q Consensus 225 n~~ 227 (559)
|-+
T Consensus 401 Nil 403 (727)
T 4b8c_D 401 NTL 403 (727)
T ss_dssp -CC
T ss_pred ccc
Confidence 544
No 127
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=3.9e-14 Score=141.94 Aligned_cols=271 Identities=11% Similarity=0.128 Sum_probs=175.5
Q ss_pred CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEE
Q 008628 95 NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLN 174 (559)
Q Consensus 95 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 174 (559)
+..++.+.+.++ ++.....+|.++ +|+.+.+..+ +..+...+|.++ +|+.+.+.+ .+....+.+|.++++|+.++
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 566667666543 444556667764 6888887765 554555667664 588888875 55555667788888888888
Q ss_pred ccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcc
Q 008628 175 VRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINET 254 (559)
Q Consensus 175 l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 254 (559)
+.+|.+.......+....|+.+.+..+ +...-..+|.++++|+.+++..+ ++.+...+|.+ .+|+.+.+. +.++.+
T Consensus 187 l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I 262 (401)
T 4fdw_A 187 LSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNI 262 (401)
T ss_dssp CTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred cCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEE
Confidence 888777765555665555777777644 44455566777777777777654 44455556666 567777773 345555
Q ss_pred cchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccCCCCcccccccccc
Q 008628 255 FPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNY 334 (559)
Q Consensus 255 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~ 334 (559)
...+|.++++|+.+.+.+|.+... .... ++...+.+
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~---------------------~~~~-I~~~aF~~---------------------- 298 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDD---------------------PEAM-IHPYCLEG---------------------- 298 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCC---------------------TTCE-ECTTTTTT----------------------
T ss_pred ChhHhhCCCCCCEEEeCCccccCC---------------------cccE-ECHHHhhC----------------------
Confidence 566666666666666665543200 0000 11111111
Q ss_pred cceeeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCC
Q 008628 335 SYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 414 (559)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 414 (559)
+++|+.+++.+ .++.+...+|.++++|+.+.|..+ ++.+...+|.++ +|+.+++++|
T Consensus 299 --------------------c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 299 --------------------CPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp --------------------CTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred --------------------CccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence 45566666663 355566677888888999988655 666777888888 8999999988
Q ss_pred cCCccCcccccCCC-CCCeEeCcCCccc
Q 008628 415 KLAGRIPTQLASLN-YLSVLNLSNNQLE 441 (559)
Q Consensus 415 ~l~~~~p~~l~~l~-~L~~L~l~~n~l~ 441 (559)
.+....+..|.+++ .++.+++..+.+.
T Consensus 356 ~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 356 TPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CCcccccccccCCCCCccEEEeCHHHHH
Confidence 88877777787774 6788887776543
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=3.7e-15 Score=130.90 Aligned_cols=131 Identities=24% Similarity=0.239 Sum_probs=79.1
Q ss_pred CCccEEEeeeccCC-cccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEE
Q 008628 49 PHMVELLISNNSLT-GEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLR 126 (559)
Q Consensus 49 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 126 (559)
++|++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+. +++|++|++++|.+++..|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 35556666655555 44555555666666666666666533 3333 66666666666666655566666666666666
Q ss_pred cccCcCCCCC-CccCCCCCCccEEEeeCCcCCcccc---hhccCCCCCCEEEccCCccc
Q 008628 127 LSGNHLEGPL-PPSLINCVKLHFLDVGNNNLSGPIP---EYLGNSTSLSFLNVRNNSLS 181 (559)
Q Consensus 127 L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~ 181 (559)
+++|.+.+.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6666666321 1556666667777777776664443 35666677777777666655
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.1e-14 Score=130.85 Aligned_cols=106 Identities=27% Similarity=0.376 Sum_probs=46.6
Q ss_pred CccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcc
Q 008628 50 HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLS 128 (559)
Q Consensus 50 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 128 (559)
++++|++++|.++ .+|..|.++++|++|++++|.+.+..+..+. +++|++|+|++|.+++..|..|..+++|++|+++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 3333344444443 3334445555555555555555433333333 4444444444444444444444444444444444
Q ss_pred cCcCCCCCCccCCCCCCccEEEeeCCcC
Q 008628 129 GNHLEGPLPPSLINCVKLHFLDVGNNNL 156 (559)
Q Consensus 129 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l 156 (559)
+|.+....+..|..+++|++|++++|.+
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 4444433333344444444444444433
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=1.7e-14 Score=127.84 Aligned_cols=109 Identities=20% Similarity=0.168 Sum_probs=56.3
Q ss_pred CccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcc
Q 008628 50 HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLS 128 (559)
Q Consensus 50 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 128 (559)
+|++|++++|.+++..+..|+++++|++|++++|.+.+..+..+. +++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 444444444444433344455566666666666666543333333 5555555555555554444445555555555555
Q ss_pred cCcCCCCCCccCCCCCCccEEEeeCCcCCc
Q 008628 129 GNHLEGPLPPSLINCVKLHFLDVGNNNLSG 158 (559)
Q Consensus 129 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 158 (559)
+|.+.+..+..+..+++|++|++++|.+.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 555553333334555555555555555543
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=6.7e-15 Score=129.22 Aligned_cols=131 Identities=20% Similarity=0.153 Sum_probs=110.9
Q ss_pred cccCCcEEEccCCccc-ccCCCCC---CCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCe
Q 008628 26 PWKNLEYLTLDSNLLQ-GSLPDLP---PHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLET 100 (559)
Q Consensus 26 ~~~~L~~L~Ls~n~~~-~~~~~~~---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~ 100 (559)
..++|++|++++|.+. +.+|..+ ++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+. +++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3378999999999987 5666554 3899999999999865 6788999999999999999877888887 999999
Q ss_pred EeccCCcCCCcc-chhhcCCCCCCEEEcccCcCCCCCC---ccCCCCCCccEEEeeCCcCCc
Q 008628 101 LDLRMNNFQGTI-PQTYAKGCNLSYLRLSGNHLEGPLP---PSLINCVKLHFLDVGNNNLSG 158 (559)
Q Consensus 101 L~L~~n~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~l~~n~l~~ 158 (559)
|++++|.+++.. +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 999999998653 3788999999999999999985544 478899999999999998874
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=3.7e-15 Score=128.02 Aligned_cols=127 Identities=23% Similarity=0.280 Sum_probs=96.3
Q ss_pred CCCccEEEeeeccCC-cccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEE
Q 008628 48 PPHMVELLISNNSLT-GEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYL 125 (559)
Q Consensus 48 ~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 125 (559)
+++++.|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+. +++|++|++++|.+++..|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 346777777777776 56677777888888888888888754 4444 7888888888888887677777778888888
Q ss_pred EcccCcCCCC-CCccCCCCCCccEEEeeCCcCCcccc---hhccCCCCCCEEEcc
Q 008628 126 RLSGNHLEGP-LPPSLINCVKLHFLDVGNNNLSGPIP---EYLGNSTSLSFLNVR 176 (559)
Q Consensus 126 ~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~ 176 (559)
++++|.+.+. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888888752 23677888888888888888876655 467788888888765
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=1.8e-14 Score=127.63 Aligned_cols=128 Identities=20% Similarity=0.160 Sum_probs=114.1
Q ss_pred cCEEECCCCCCCCCCcccccCCcEEEccCCcccccCCCCC---CCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcC
Q 008628 9 LYFLDLSRNFLTSIDHLPWKNLEYLTLDSNLLQGSLPDLP---PHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSL 85 (559)
Q Consensus 9 L~~L~ls~n~~~~i~~~~~~~L~~L~Ls~n~~~~~~~~~~---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~ 85 (559)
.+.+++++++++.+|....++|++|++++|.+.+..+..+ .+|++|++++|.+++..+..|.++++|++|++++|.+
T Consensus 9 ~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 5789999999999998888999999999999997766554 4899999999999977777889999999999999999
Q ss_pred ccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCC
Q 008628 86 SGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPL 136 (559)
Q Consensus 86 ~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 136 (559)
++..+..+. +++|++|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 976666666 999999999999999777777899999999999999988543
No 134
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.52 E-value=7e-13 Score=133.36 Aligned_cols=148 Identities=14% Similarity=0.159 Sum_probs=68.5
Q ss_pred cCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCcccccCc-cCEEEccCCcCCCCcchhhcCCCCc
Q 008628 139 SLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNST-LEILDMRMNKFSGSLPQTFAKSCVL 217 (559)
Q Consensus 139 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~L 217 (559)
+|.++++|+.+.+.++. ......+|..+.+|+.+.+..+ +.......+.... |+.+.+..+... +.+......+|
T Consensus 157 aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l 232 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGV 232 (394)
T ss_dssp TTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCC
T ss_pred hhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCC
Confidence 44445555555554332 1123334444555555544433 1111122222222 444443333211 12222334456
Q ss_pred cEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEcc
Q 008628 218 VSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLS 297 (559)
Q Consensus 218 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~ 297 (559)
+.+.+... ++.....++..+..++.+.+..+.. .....+|..+..++.+......+. ...+..+.+|+.+.+.
T Consensus 233 ~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~-----~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 233 KNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP-----EKTFYGCSSLTEVKLL 305 (394)
T ss_dssp CEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEEC-----TTTTTTCTTCCEEEEC
T ss_pred ceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceeec-----cccccccccccccccc
Confidence 66666543 2334445666777777777765532 344556667777777666554321 1122445566666554
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=5.3e-14 Score=120.76 Aligned_cols=128 Identities=20% Similarity=0.157 Sum_probs=65.3
Q ss_pred cccCeEeccCCcCC-CccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEE
Q 008628 96 STLETLDLRMNNFQ-GTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLN 174 (559)
Q Consensus 96 ~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 174 (559)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555554 34444445555555555555555533 4455555555555555555544454444555555555
Q ss_pred ccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCC---ccccCCCCCcEEEee
Q 008628 175 VRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLP---PSLVNCRHLEVIDVG 247 (559)
Q Consensus 175 l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~l~ 247 (559)
+++|.+.+.. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 95 ls~N~i~~~~----------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLS----------------------TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHH----------------------HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChH----------------------HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5555544311 12344455555555555555554433 345555555555543
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.49 E-value=1e-12 Score=132.22 Aligned_cols=317 Identities=12% Similarity=0.065 Sum_probs=201.3
Q ss_pred cCCcccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcccCcCCCCCCc
Q 008628 60 SLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSGNHLEGPLPP 138 (559)
Q Consensus 60 ~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 138 (559)
.++.+...+|.++++|+.+.+..+ ++..-..+|. |++|+.+++..+ ++.....+|.++.+|+.+.+..+ +......
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 355566778999999999999754 6544455666 889999998755 55456677888888888776654 3334445
Q ss_pred cCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCcccccC-ccCEEEccCCcCCCCcchhhcCCCCc
Q 008628 139 SLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNS-TLEILDMRMNKFSGSLPQTFAKSCVL 217 (559)
Q Consensus 139 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L 217 (559)
+|.++..++....... ......+|.++++|+.+.+.++... .....+... +|+.+++..+ +.......|..+..|
T Consensus 135 aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 135 AFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL 210 (394)
T ss_dssp TTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred eeecccccccccCccc--cccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence 6666654433322222 2233467888888888888765432 333344433 3777777655 333445566677777
Q ss_pred cEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEcccccccccCCCCCCCCCCCCceEEEcc
Q 008628 218 VSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFRGPIGDTKTRVPFPKLRIIDLS 297 (559)
Q Consensus 218 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~ 297 (559)
+.+.+..+... +........+|+.+.+... ++.....++..+..++.+.+..+... +. ...+..+..++.+...
T Consensus 211 ~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~--i~-~~~F~~~~~l~~~~~~ 284 (394)
T 4fs7_A 211 ENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR--IG-GSLFYNCSGLKKVIYG 284 (394)
T ss_dssp CBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE--EC-SCTTTTCTTCCEEEEC
T ss_pred ceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce--ee-ccccccccccceeccC
Confidence 77766654322 2223334456777776543 23344456667777777777665432 11 1122445566665554
Q ss_pred CccceeecChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhccccEEEcCCcccccccchhhh
Q 008628 298 YNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILTTFATIDLSSNRFQGEISQVLG 377 (559)
Q Consensus 298 ~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~ 377 (559)
.+.+. ...+. .+.+|+.+.+.++ ++.+...+|.
T Consensus 285 ~~~i~----~~~F~------------------------------------------~~~~L~~i~l~~~-i~~I~~~aF~ 317 (394)
T 4fs7_A 285 SVIVP----EKTFY------------------------------------------GCSSLTEVKLLDS-VKFIGEEAFE 317 (394)
T ss_dssp SSEEC----TTTTT------------------------------------------TCTTCCEEEECTT-CCEECTTTTT
T ss_pred ceeec----ccccc------------------------------------------ccccccccccccc-cceechhhhc
Confidence 43221 11111 1567777877654 5556677899
Q ss_pred cCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEeCcCC
Q 008628 378 KLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNN 438 (559)
Q Consensus 378 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n 438 (559)
++++|+.++|..+ ++.+...+|.++++|+.+++..+ +......+|.++++|+.+++..+
T Consensus 318 ~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 318 SCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 9999999999754 77677789999999999999877 66666778999999999988654
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=8.2e-14 Score=122.29 Aligned_cols=92 Identities=25% Similarity=0.279 Sum_probs=86.3
Q ss_pred hccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEe
Q 008628 355 LTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN 434 (559)
Q Consensus 355 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 434 (559)
.+.+++|++++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++.+..+..|..+++|++|+
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 46789999999999999899999999999999999999988888899999999999999999988888899999999999
Q ss_pred CcCCccccCCCC
Q 008628 435 LSNNQLEGPIPE 446 (559)
Q Consensus 435 l~~n~l~~~~p~ 446 (559)
+++|++.|.++.
T Consensus 109 L~~N~~~c~c~~ 120 (170)
T 3g39_A 109 LLNNPWDCACSD 120 (170)
T ss_dssp CCSSCBCTTBGG
T ss_pred eCCCCCCCCchh
Confidence 999999998864
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=2e-13 Score=120.73 Aligned_cols=86 Identities=20% Similarity=0.236 Sum_probs=63.9
Q ss_pred hccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCc--cccCCCCCCEEeCCCCcCCccCcc----cccCCC
Q 008628 355 LTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPS--SLRNLTELESLDLSSNKLAGRIPT----QLASLN 428 (559)
Q Consensus 355 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~p~----~l~~l~ 428 (559)
+++|++|++++|.+++..+..+..+++|++|+|++|.++. +|. .+..+++|+.|++++|++.. +|. .+..++
T Consensus 63 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~ 140 (176)
T 1a9n_A 63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVP 140 (176)
T ss_dssp CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCT
T ss_pred CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCC
Confidence 4566777777777776555556788888888888888863 444 67788888888888888874 444 378888
Q ss_pred CCCeEeCcCCcccc
Q 008628 429 YLSVLNLSNNQLEG 442 (559)
Q Consensus 429 ~L~~L~l~~n~l~~ 442 (559)
+|+.|++++|....
T Consensus 141 ~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 141 QVRVLDFQKVKLKE 154 (176)
T ss_dssp TCSEETTEECCHHH
T ss_pred ccceeCCCcCCHHH
Confidence 88888888887653
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=2.2e-13 Score=120.50 Aligned_cols=125 Identities=18% Similarity=0.122 Sum_probs=84.8
Q ss_pred cCCcEEEccCCcccccCCCC---CCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCeEec
Q 008628 28 KNLEYLTLDSNLLQGSLPDL---PPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDL 103 (559)
Q Consensus 28 ~~L~~L~Ls~n~~~~~~~~~---~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L 103 (559)
++|+.|++++|.+... +.. .++|+.|++++|.+++. ..++++++|++|++++|.+.+..+..+. +++|++|++
T Consensus 19 ~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 4555555555555432 221 12566666666666643 4577788888888888888754444445 888888888
Q ss_pred cCCcCCCccch--hhcCCCCCCEEEcccCcCCCCCCcc----CCCCCCccEEEeeCCcCC
Q 008628 104 RMNNFQGTIPQ--TYAKGCNLSYLRLSGNHLEGPLPPS----LINCVKLHFLDVGNNNLS 157 (559)
Q Consensus 104 ~~n~~~~~~~~--~~~~l~~L~~L~L~~n~~~~~~~~~----l~~l~~L~~L~l~~n~l~ 157 (559)
++|.+.. +|. .+..+++|++|++++|.+. ..|.. +..+++|++|+++.|...
T Consensus 96 ~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 96 TNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 8888863 444 6778888888888888887 44553 778888888888888765
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=3.1e-13 Score=119.00 Aligned_cols=92 Identities=25% Similarity=0.263 Sum_probs=85.1
Q ss_pred hccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEe
Q 008628 355 LTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN 434 (559)
Q Consensus 355 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 434 (559)
.+.|++|++++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|.+.+..+..|..+++|++|+
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 46789999999999999999999999999999999999988888889999999999999999987777799999999999
Q ss_pred CcCCccccCCCC
Q 008628 435 LSNNQLEGPIPE 446 (559)
Q Consensus 435 l~~n~l~~~~p~ 446 (559)
+++|++.+.++.
T Consensus 112 L~~N~~~c~~~~ 123 (174)
T 2r9u_A 112 LYNNPWDCECRD 123 (174)
T ss_dssp CCSSCBCTTBGG
T ss_pred eCCCCccccccc
Confidence 999999988753
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=3.5e-15 Score=134.83 Aligned_cols=83 Identities=27% Similarity=0.300 Sum_probs=58.9
Q ss_pred hccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCC-ccccCCCCCCEEeCCCCcCCccCcc----------c
Q 008628 355 LTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIP-SSLRNLTELESLDLSSNKLAGRIPT----------Q 423 (559)
Q Consensus 355 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~----------~ 423 (559)
+++|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+.+|. .
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 5677778888887775 33 57777888888888888775432 4677778888888888887766554 2
Q ss_pred ccCCCCCCeEeCcCCccc
Q 008628 424 LASLNYLSVLNLSNNQLE 441 (559)
Q Consensus 424 l~~l~~L~~L~l~~n~l~ 441 (559)
+..+++|+.|+ +|+++
T Consensus 170 ~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 170 VKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHCSSCSEEC--CGGGT
T ss_pred HHhCCCcEEEC--CcccC
Confidence 67788888876 55554
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.37 E-value=2.2e-12 Score=113.06 Aligned_cols=83 Identities=22% Similarity=0.248 Sum_probs=35.1
Q ss_pred CccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEEEcc
Q 008628 50 HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLS 128 (559)
Q Consensus 50 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 128 (559)
++++|+|++|.+++..+..|.++++|++|++++|.+.+..+..+. +++|++|+|++|.+++..+..|..+++|++|+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 334444444444434444455555555555555555433333332 4444444444444443333333333444444444
Q ss_pred cCcC
Q 008628 129 GNHL 132 (559)
Q Consensus 129 ~n~~ 132 (559)
+|.+
T Consensus 111 ~N~~ 114 (170)
T 3g39_A 111 NNPW 114 (170)
T ss_dssp SSCB
T ss_pred CCCC
Confidence 4333
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.35 E-value=1e-10 Score=117.47 Aligned_cols=158 Identities=9% Similarity=0.152 Sum_probs=87.6
Q ss_pred cccCccCCCCC-CCCEEEcccCcCccccCcccc-CcccCeEeccCCc---CCCccchhhcCCCCCCEEEcccCcCCCCCC
Q 008628 63 GEIPSSFCNLS-SIQYLNLSNNSLSGQIPQCLG-NSTLETLDLRMNN---FQGTIPQTYAKGCNLSYLRLSGNHLEGPLP 137 (559)
Q Consensus 63 ~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~-~~~L~~L~L~~n~---~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 137 (559)
.+...+|.+++ .|+.+.+..+ ++..-..+|. |++|+.+.+..+. ++.....+|..+.+|+.+.+..+ +.....
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 34445666663 4777776543 4434444555 6777777766542 44444566666777776666543 332344
Q ss_pred ccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCcccccCccCEEEccCCcCCCCcchhhcCCCCc
Q 008628 138 PSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLEILDMRMNKFSGSLPQTFAKSCVL 217 (559)
Q Consensus 138 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 217 (559)
.+|..+.+|+.+.+..+. .......|..+..|+.+.+..+ +.......+....|+.+.+..+... .....+..+.++
T Consensus 131 ~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~-i~~~af~~c~~l 207 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTR-IGTNAFSECFAL 207 (394)
T ss_dssp TTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCE-ECTTTTTTCTTC
T ss_pred hhhhhhccccccccccee-eeecccceecccccccccccce-eeEeccccccccceeEEEECCcccc-cccchhhhcccc
Confidence 566777777777776442 3244456667777777776554 2223333444444666666544222 334455566666
Q ss_pred cEEEccCC
Q 008628 218 VSLNLNGN 225 (559)
Q Consensus 218 ~~L~L~~n 225 (559)
........
T Consensus 208 ~~~~~~~~ 215 (394)
T 4gt6_A 208 STITSDSE 215 (394)
T ss_dssp CEEEECCS
T ss_pred ceeccccc
Confidence 66655444
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.34 E-value=1.6e-14 Score=130.41 Aligned_cols=127 Identities=22% Similarity=0.258 Sum_probs=62.0
Q ss_pred hhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCcccccCccC
Q 008628 115 TYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNSTLE 194 (559)
Q Consensus 115 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~ 194 (559)
.+..+++|++|++++|.+.+ +| .+.++++|++|++++|.+. .+|..+..+++|+.|++++|.+.+ +
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l---------- 108 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L---------- 108 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-H----------
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-C----------
Confidence 55555555555555555553 34 5555555555555555554 334444444455555555554443 1
Q ss_pred EEEccCCcCCCCcchhhcCCCCccEEEccCCccccCCC-ccccCCCCCcEEEeecCccCcccch----------hhcCCC
Q 008628 195 ILDMRMNKFSGSLPQTFAKSCVLVSLNLNGNRLEGPLP-PSLVNCRHLEVIDVGNNQINETFPH----------WLDVLP 263 (559)
Q Consensus 195 ~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~----------~~~~l~ 263 (559)
| .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.+..|. .+..++
T Consensus 109 -------------~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~ 174 (198)
T 1ds9_A 109 -------------S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP 174 (198)
T ss_dssp -------------H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCS
T ss_pred -------------C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCC
Confidence 2 23344444444444444442211 2344455555555555554433322 245566
Q ss_pred CCcEEE
Q 008628 264 ELQVLT 269 (559)
Q Consensus 264 ~L~~L~ 269 (559)
+|++|+
T Consensus 175 ~L~~Ld 180 (198)
T 1ds9_A 175 NLKKLD 180 (198)
T ss_dssp SCSEEC
T ss_pred CcEEEC
Confidence 666665
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=4.7e-12 Score=111.37 Aligned_cols=85 Identities=26% Similarity=0.298 Sum_probs=39.8
Q ss_pred CccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCccccCcccCeEeccCCcCCCccchhhcCCCCCCEEEccc
Q 008628 50 HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSG 129 (559)
Q Consensus 50 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 129 (559)
+|++|+|++|.+++..|..|.++++|++|+|++|.+.+ ..+..|..+++|++|++++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------------------i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-----------------------IPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------------------CCTTTTTTCTTCCEEECCS
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-----------------------cChhHhCCcchhhEEECCC
Confidence 44444444444444444445555555555555555543 3333344444455555555
Q ss_pred CcCCCCCCccCCCCCCccEEEeeCCcCC
Q 008628 130 NHLEGPLPPSLINCVKLHFLDVGNNNLS 157 (559)
Q Consensus 130 n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 157 (559)
|.+.+..+..|..+++|++|++++|.+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 5444333333455555555555555544
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=2.6e-13 Score=134.68 Aligned_cols=88 Identities=20% Similarity=0.258 Sum_probs=62.9
Q ss_pred hccccEEEcCCcccccc----cchhhhcCCCCCEEEccCCcCCCCC----CccccCCCCCCEEeCCCCcCCcc----Ccc
Q 008628 355 LTTFATIDLSSNRFQGE----ISQVLGKLNSLKSLNISHNNLTGGI----PSSLRNLTELESLDLSSNKLAGR----IPT 422 (559)
Q Consensus 355 l~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~----~p~ 422 (559)
.+.|++|++++|.+++. ++..+..+++|++|+|++|.+++.. +..+...++|++|+|++|.++.. ++.
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 45678888888887653 3344567788888888888876432 45566777888888888888753 334
Q ss_pred cccCCCCCCeEeCcCCcccc
Q 008628 423 QLASLNYLSVLNLSNNQLEG 442 (559)
Q Consensus 423 ~l~~l~~L~~L~l~~n~l~~ 442 (559)
.+...++|++|++++|+++.
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCH
T ss_pred HHHhCCCCCEEeccCCCCCH
Confidence 45566888888888888764
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=1.2e-13 Score=137.14 Aligned_cols=72 Identities=22% Similarity=0.234 Sum_probs=53.2
Q ss_pred hccccEEEcCCccccccc----chhhhcCCCCCEEEccCCcCCCC----CCccccCCCCCCEEeCCCCcCCccCcccccC
Q 008628 355 LTTFATIDLSSNRFQGEI----SQVLGKLNSLKSLNISHNNLTGG----IPSSLRNLTELESLDLSSNKLAGRIPTQLAS 426 (559)
Q Consensus 355 l~~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 426 (559)
.++|++|+|++|.+.+.. +..+...++|++|+|++|.+++. +...+...++|++|+|++|.+.......+..
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 567888888888887543 45567788999999999998754 3344556788999999999988654444443
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.18 E-value=3.2e-09 Score=106.52 Aligned_cols=307 Identities=12% Similarity=0.165 Sum_probs=169.2
Q ss_pred CccEEEeeeccCCcccCccCCCCCCCCEEEcccCc---CccccCcccc-CcccCeEeccCCcCCCccchhhcCCCCCCEE
Q 008628 50 HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNS---LSGQIPQCLG-NSTLETLDLRMNNFQGTIPQTYAKGCNLSYL 125 (559)
Q Consensus 50 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~---~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 125 (559)
.|+.+.+..+ ++.+...+|.++++|+.+.+..+. ++..-..+|. +.+|+.+.+..+ ++......|..+.+|+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 4777888654 666777889999999999988763 4433344565 788888877654 444556778888899998
Q ss_pred EcccCcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCCccccccCcccccC-ccCEEEccCCcCC
Q 008628 126 RLSGNHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNNSLSGPIPECLGNS-TLEILDMRMNKFS 204 (559)
Q Consensus 126 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~ 204 (559)
.+..+. ..+....|..+..|+.+.+..+ ++.....+|.. .+|+.+.+..+... .....+... .+.......+...
T Consensus 143 ~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~ 218 (394)
T 4gt6_A 143 TIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYP 218 (394)
T ss_dssp ECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSC
T ss_pred ccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceecccccccc
Confidence 886543 3345567888888998888765 33344455543 67888877654332 222233332 2555555443322
Q ss_pred CCcchhh--------------cCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhcCCCCCcEEEc
Q 008628 205 GSLPQTF--------------AKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTL 270 (559)
Q Consensus 205 ~~~~~~~--------------~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 270 (559)
. ....+ .....+..+.+.. .++.....+|.++.+|+.+.+.++. ......+|.+
T Consensus 219 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~--------- 286 (394)
T 4gt6_A 219 A-IDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMN--------- 286 (394)
T ss_dssp B-SSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTT---------
T ss_pred c-ccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEeccccc-ceecCccccc---------
Confidence 1 11100 0111222222221 1222233344445555555443321 1222333444
Q ss_pred ccccccccCCCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhh
Q 008628 271 RSNRFRGPIGDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQ 350 (559)
Q Consensus 271 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 350 (559)
+++|+.+.+.. .+....... +.+
T Consensus 287 -----------------c~~L~~i~l~~-~i~~I~~~a-F~~-------------------------------------- 309 (394)
T 4gt6_A 287 -----------------CPALQDIEFSS-RITELPESV-FAG-------------------------------------- 309 (394)
T ss_dssp -----------------CTTCCEEECCT-TCCEECTTT-TTT--------------------------------------
T ss_pred -----------------ccccccccCCC-cccccCcee-ecC--------------------------------------
Confidence 44455554431 122111111 111
Q ss_pred HHHhhccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCC
Q 008628 351 MERILTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYL 430 (559)
Q Consensus 351 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 430 (559)
+.+|+.+++..+ ++.+...+|.++.+|+++.|..+ ++.+...+|.++++|+.+++.++.... ..+.....|
T Consensus 310 ----c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L 380 (394)
T 4gt6_A 310 ----CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGL 380 (394)
T ss_dssp ----CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC
T ss_pred ----CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCC
Confidence 445566666543 44455677888889999988754 666777888899999999988875432 456677888
Q ss_pred CeEeCcCCcc
Q 008628 431 SVLNLSNNQL 440 (559)
Q Consensus 431 ~~L~l~~n~l 440 (559)
+.+.+..+.+
T Consensus 381 ~~i~i~~~~~ 390 (394)
T 4gt6_A 381 QNLPVAPGSI 390 (394)
T ss_dssp ----------
T ss_pred CEEEeCCCCE
Confidence 8888776644
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=4.2e-11 Score=118.25 Aligned_cols=90 Identities=23% Similarity=0.234 Sum_probs=83.2
Q ss_pred hccccEEEcCC-cccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeE
Q 008628 355 LTTFATIDLSS-NRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVL 433 (559)
Q Consensus 355 l~~L~~L~ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 433 (559)
+++|++|+|++ |.+++..+..|.++++|+.|+|++|++++..|..|.++++|++|+|++|++.+..+..|..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 67899999996 999998889999999999999999999999999999999999999999999987777777776 9999
Q ss_pred eCcCCccccCCC
Q 008628 434 NLSNNQLEGPIP 445 (559)
Q Consensus 434 ~l~~n~l~~~~p 445 (559)
++.+|++.|.++
T Consensus 109 ~l~~N~~~c~c~ 120 (347)
T 2ifg_A 109 VLSGNPLHCSCA 120 (347)
T ss_dssp ECCSSCCCCCGG
T ss_pred EeeCCCccCCCc
Confidence 999999998875
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=6.7e-11 Score=116.74 Aligned_cols=108 Identities=25% Similarity=0.224 Sum_probs=93.9
Q ss_pred cEEEcCCc-ccccccchhhhcCCCCCEEEccC-CcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEeCc
Q 008628 359 ATIDLSSN-RFQGEISQVLGKLNSLKSLNISH-NNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLS 436 (559)
Q Consensus 359 ~~L~ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~ 436 (559)
..++++++ .+++ +|. +..+++|++|+|++ |.+++..+..|.++++|+.|+|++|.+++..|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35788888 8885 677 99999999999996 99998888999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCccCCccccCCCCCCCCC
Q 008628 437 NNQLEGPIPEGPQFNTFANDSYSGNSGLCGFP 468 (559)
Q Consensus 437 ~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 468 (559)
+|++++..|.......+..+.+.+|+..|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred CCccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 99999766554333347888899999988764
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.03 E-value=3.8e-08 Score=98.12 Aligned_cols=122 Identities=8% Similarity=0.080 Sum_probs=67.2
Q ss_pred CccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCccccCccccCcccCeEeccCCcCCCccchhhcCCCCCCEEEccc
Q 008628 50 HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGTIPQTYAKGCNLSYLRLSG 129 (559)
Q Consensus 50 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 129 (559)
+|+.+.+.. .++.+...+|.+|.+|+.++|..+ ++..-..+|...+|+.+.+..+ +......+|.. ++|+.+.+..
T Consensus 47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp~ 122 (379)
T 4h09_A 47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADTKLQSYTGMER-VKKFGDYVFQG-TDLDDFEFPG 122 (379)
T ss_dssp GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCCCCEEEECTT-CCEECTTTTTT-CCCSEEECCT
T ss_pred CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCCCCceEECCce-eeEeccceecc-CCcccccCCC
Confidence 566666653 355566677888888888888654 4434444555335666666543 33334444544 3677777765
Q ss_pred CcCCCCCCccCCCCCCccEEEeeCCcCCcccchhccCCCCCCEEEccCC
Q 008628 130 NHLEGPLPPSLINCVKLHFLDVGNNNLSGPIPEYLGNSTSLSFLNVRNN 178 (559)
Q Consensus 130 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 178 (559)
+. .......|.++ +++.+.+..+ ++......|..+..++...+..+
T Consensus 123 ~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 123 AT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp TC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTT
T ss_pred cc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccc
Confidence 42 21223344443 4555555443 23233455666666666665543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.96 E-value=1.2e-07 Score=94.59 Aligned_cols=81 Identities=12% Similarity=0.148 Sum_probs=59.0
Q ss_pred hccccEEEcCCcccccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEe
Q 008628 355 LTTFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN 434 (559)
Q Consensus 355 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 434 (559)
+..|+.+++..+ +..+...+|.++++|+.+.+.++.++.+...+|.++++|+.++|..+ +..+...+|.++++|+.+.
T Consensus 262 ~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 262 CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred eehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence 445666666443 44455566788888888888888887777788888888888888754 5555566788888888887
Q ss_pred CcC
Q 008628 435 LSN 437 (559)
Q Consensus 435 l~~ 437 (559)
+..
T Consensus 340 ip~ 342 (379)
T 4h09_A 340 YPK 342 (379)
T ss_dssp CCT
T ss_pred ECC
Confidence 654
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.87 E-value=1.3e-09 Score=107.05 Aligned_cols=64 Identities=16% Similarity=0.264 Sum_probs=29.5
Q ss_pred hccccEEEcCCcccccccchhhh---cCCCCCEEEccCCcCCCC----CCccccCCCCCCEEeCCCCcCCc
Q 008628 355 LTTFATIDLSSNRFQGEISQVLG---KLNSLKSLNISHNNLTGG----IPSSLRNLTELESLDLSSNKLAG 418 (559)
Q Consensus 355 l~~L~~L~ls~n~l~~~~~~~~~---~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~ 418 (559)
+++|++|++++|.+.+..+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|++++|.++.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 34455555555544433222221 344555555555555432 12222344556666666555543
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.86 E-value=5.8e-09 Score=102.45 Aligned_cols=165 Identities=19% Similarity=0.256 Sum_probs=110.5
Q ss_pred CcchhhcCCCCccEEEccCCccccCCCccccCCCCCcEEEeecCccCcccchhhc--CCCCCcEEEccc--ccccccC--
Q 008628 206 SLPQTFAKSCVLVSLNLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLD--VLPELQVLTLRS--NRFRGPI-- 279 (559)
Q Consensus 206 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~--n~l~~~~-- 279 (559)
.+...+..+|+|+.|++++|.-. ..+. +. +++|+.|++..|.+.......+. .+++|+.|+|+. +...+..
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred CHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 35567788899999999887311 2232 33 78999999999988765444454 689999999863 2221111
Q ss_pred ---CCCCCCCCCCCceEEEccCccceeecChHhhhcccccccccCCCCcccccccccccceeeeEEeecCchhhHHHhhc
Q 008628 280 ---GDTKTRVPFPKLRIIDLSYNRFTGVLPIWYLNGFKAMMHGDDNSTEVNYMRSLNYSYYESISLTMKGNNIQMERILT 356 (559)
Q Consensus 280 ---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 356 (559)
........+|+|+.|++.+|.+.+..+..+... ..++
T Consensus 240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a----------------------------------------~~~~ 279 (362)
T 2ra8_A 240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES----------------------------------------DILP 279 (362)
T ss_dssp GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC----------------------------------------SSGG
T ss_pred HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC----------------------------------------ccCC
Confidence 111222358999999999998875433222110 0168
Q ss_pred cccEEEcCCccccccc----chhhhcCCCCCEEEccCCcCCCCCCccccC-CCCCCEEeCCCCc
Q 008628 357 TFATIDLSSNRFQGEI----SQVLGKLNSLKSLNISHNNLTGGIPSSLRN-LTELESLDLSSNK 415 (559)
Q Consensus 357 ~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~ 415 (559)
+|++|+|+.|.+.+.. +..+..+++|+.|+|++|.++...-..+.. + ...++++.++
T Consensus 280 ~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp GCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 9999999999998753 333466899999999999987654444443 2 3568888776
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=3.4e-08 Score=87.40 Aligned_cols=86 Identities=24% Similarity=0.303 Sum_probs=48.5
Q ss_pred ccccEEEcCCccccccc----chhhhcCCCCCEEEccCCcCCCC----CCccccCCCCCCEEeC--CCCcCCcc----Cc
Q 008628 356 TTFATIDLSSNRFQGEI----SQVLGKLNSLKSLNISHNNLTGG----IPSSLRNLTELESLDL--SSNKLAGR----IP 421 (559)
Q Consensus 356 ~~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L--s~n~l~~~----~p 421 (559)
++|++|+|++|.+.+.. ...+...++|++|+|++|.+.+. +...+...++|++|+| ++|.+... +.
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~ 144 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence 45555666666554432 23344445666666666666543 2344555566777777 66666542 22
Q ss_pred ccccCCCCCCeEeCcCCccc
Q 008628 422 TQLASLNYLSVLNLSNNQLE 441 (559)
Q Consensus 422 ~~l~~l~~L~~L~l~~n~l~ 441 (559)
..+...++|++|++++|.+.
T Consensus 145 ~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 145 NMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCcCEEeccCCCCC
Confidence 34455567777777777654
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.37 E-value=5.1e-07 Score=83.96 Aligned_cols=78 Identities=28% Similarity=0.401 Sum_probs=41.6
Q ss_pred hccccEEEcCCccccc--ccchhhhcCCCCCEEEccCCcCCCCCCccccCCC--CCCEEeCCCCcCCccCc-------cc
Q 008628 355 LTTFATIDLSSNRFQG--EISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLT--ELESLDLSSNKLAGRIP-------TQ 423 (559)
Q Consensus 355 l~~L~~L~ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~p-------~~ 423 (559)
++.|++|+|++|.+++ .++..+..+++|+.|+|++|++++. ..+..+. +|++|+|++|++.+..| ..
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 4566666666666655 2334455566666666666666543 2233333 56666666666654433 12
Q ss_pred ccCCCCCCeEe
Q 008628 424 LASLNYLSVLN 434 (559)
Q Consensus 424 l~~l~~L~~L~ 434 (559)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 44555555554
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.35 E-value=7.4e-08 Score=85.23 Aligned_cols=63 Identities=22% Similarity=0.271 Sum_probs=44.5
Q ss_pred hccccEEEcCCcccccc----cchhhhcCCCCCEEEc--cCCcCCCC----CCccccCCCCCCEEeCCCCcCC
Q 008628 355 LTTFATIDLSSNRFQGE----ISQVLGKLNSLKSLNI--SHNNLTGG----IPSSLRNLTELESLDLSSNKLA 417 (559)
Q Consensus 355 l~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~L--s~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~ 417 (559)
.+.|++|+|++|.+.+. +...+...++|++|+| ++|.+... +.+.+...++|++|+|++|.+.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 45677888888877754 3445666778888888 77887654 2344555678888888888765
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.26 E-value=1.7e-07 Score=80.76 Aligned_cols=83 Identities=14% Similarity=0.174 Sum_probs=69.4
Q ss_pred cccEEEcCCcccccccchhhhcCCCCCEEEccCCc-CCCCCCccccCC----CCCCEEeCCCCc-CCccCcccccCCCCC
Q 008628 357 TFATIDLSSNRFQGEISQVLGKLNSLKSLNISHNN-LTGGIPSSLRNL----TELESLDLSSNK-LAGRIPTQLASLNYL 430 (559)
Q Consensus 357 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~Ls~n~-l~~~~p~~l~~l~~L 430 (559)
.|++||+++|.+++.....+.++++|++|+|++|. +++..-..+..+ ++|++|+|++|. +++.--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 68999999999998888888999999999999995 776555556654 479999999996 776444567889999
Q ss_pred CeEeCcCCc
Q 008628 431 SVLNLSNNQ 439 (559)
Q Consensus 431 ~~L~l~~n~ 439 (559)
++|++++|+
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 999999986
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.26 E-value=5.9e-07 Score=83.53 Aligned_cols=84 Identities=29% Similarity=0.377 Sum_probs=64.8
Q ss_pred EEcCCccc---ccccchhhhcCCCCCEEEccCCcCCC--CCCccccCCCCCCEEeCCCCcCCccCcccccCCC--CCCeE
Q 008628 361 IDLSSNRF---QGEISQVLGKLNSLKSLNISHNNLTG--GIPSSLRNLTELESLDLSSNKLAGRIPTQLASLN--YLSVL 433 (559)
Q Consensus 361 L~ls~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L 433 (559)
++++.|.. ...++....++++|++|+|++|++++ .+|..+..+++|+.|+|++|.+.+. ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 56666633 22233334678999999999999998 4567778899999999999999975 3344444 99999
Q ss_pred eCcCCccccCCCC
Q 008628 434 NLSNNQLEGPIPE 446 (559)
Q Consensus 434 ~l~~n~l~~~~p~ 446 (559)
++++|++.+.+|.
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 9999999987763
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.09 E-value=2e-06 Score=74.09 Aligned_cols=82 Identities=11% Similarity=0.057 Sum_probs=52.3
Q ss_pred CccEEEeeeccCCcccCccCCCCCCCCEEEcccCc-CccccCcccc-C----cccCeEeccCCc-CCCccchhhcCCCCC
Q 008628 50 HMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNS-LSGQIPQCLG-N----STLETLDLRMNN-FQGTIPQTYAKGCNL 122 (559)
Q Consensus 50 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~-~----~~L~~L~L~~n~-~~~~~~~~~~~l~~L 122 (559)
.|+.||++++.+++..-..+.++++|++|+|++|. +++.--..+. + ++|++|++++|. ++...-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 67888888887776656667778888888888874 5532222222 2 357777777764 555444455566666
Q ss_pred CEEEcccCc
Q 008628 123 SYLRLSGNH 131 (559)
Q Consensus 123 ~~L~L~~n~ 131 (559)
++|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666666654
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.35 E-value=0.00037 Score=57.02 Aligned_cols=60 Identities=22% Similarity=0.297 Sum_probs=40.8
Q ss_pred EEEccCCcCC-CCCCccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeEeCcCCccccCCC
Q 008628 384 SLNISHNNLT-GGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIP 445 (559)
Q Consensus 384 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p 445 (559)
.++.++++++ ..+|..+ .++|++|+|++|.++...+..|..+++|+.|+|++|++.|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 5666666665 2444333 2357777888887776666677778888888888888877663
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.30 E-value=0.00013 Score=63.95 Aligned_cols=86 Identities=13% Similarity=0.143 Sum_probs=57.8
Q ss_pred hccccEEEcCCccccccc----chhhhcCCCCCEEEccCCcCCCC----CCccccCCCCCCEEeCCCCcC---Cc----c
Q 008628 355 LTTFATIDLSSNRFQGEI----SQVLGKLNSLKSLNISHNNLTGG----IPSSLRNLTELESLDLSSNKL---AG----R 419 (559)
Q Consensus 355 l~~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l---~~----~ 419 (559)
-+.|+.|+|++|.+.+.. ...+..-+.|++|+|++|.|... +-+++..-+.|++|+|++|.. .. .
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 467888888888887553 33445567888888888888744 233455567788888886533 32 2
Q ss_pred CcccccCCCCCCeEeCcCCcc
Q 008628 420 IPTQLASLNYLSVLNLSNNQL 440 (559)
Q Consensus 420 ~p~~l~~l~~L~~L~l~~n~l 440 (559)
+...+..-+.|+.|+++.|.+
T Consensus 149 ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 149 MMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhCCCcCeEeccCCCc
Confidence 334556667888888877654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.97 E-value=0.00091 Score=54.68 Aligned_cols=55 Identities=25% Similarity=0.376 Sum_probs=32.9
Q ss_pred EEEccCCccc-ccCC-CCCCCccEEEeeeccCCcccCccCCCCCCCCEEEcccCcCc
Q 008628 32 YLTLDSNLLQ-GSLP-DLPPHMVELLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS 86 (559)
Q Consensus 32 ~L~Ls~n~~~-~~~~-~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~ 86 (559)
.++.+++.++ ..+| ..+.+++.|+|++|.|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4455555544 1222 23335566666666666555566777888888888888764
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.66 E-value=0.0015 Score=57.21 Aligned_cols=84 Identities=11% Similarity=0.201 Sum_probs=64.2
Q ss_pred hccccEEEcCCc-ccccc----cchhhhcCCCCCEEEccCCcCCCC----CCccccCCCCCCEEeCCCCcCCcc----Cc
Q 008628 355 LTTFATIDLSSN-RFQGE----ISQVLGKLNSLKSLNISHNNLTGG----IPSSLRNLTELESLDLSSNKLAGR----IP 421 (559)
Q Consensus 355 l~~L~~L~ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p 421 (559)
-+.|++|+|++| .+.+. +.+.+..-+.|+.|+|++|++.+. +.+.+..-+.|++|+|++|.+... +-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 468999999986 77654 345566778999999999999744 334455668999999999999863 33
Q ss_pred ccccCCCCCCeEeCcCC
Q 008628 422 TQLASLNYLSVLNLSNN 438 (559)
Q Consensus 422 ~~l~~l~~L~~L~l~~n 438 (559)
+.+..-+.|++|+|++|
T Consensus 120 ~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTTTCCCSEEECCCC
T ss_pred HHHhhCCceeEEECCCC
Confidence 45666678999999875
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=67.18 E-value=10 Score=28.64 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=28.0
Q ss_pred cccccchhhhcCCCCCEEEccCCcCCCCCCccccCCCCCCEEeCCCC
Q 008628 368 FQGEISQVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 414 (559)
Q Consensus 368 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 414 (559)
++.+...+|.++++|+++.|..+ ++.+...+|.++.+|+.+.+...
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 44445556666777777776654 34455566666666666666553
No 166
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=59.18 E-value=7.3 Score=25.33 Aligned_cols=23 Identities=9% Similarity=0.083 Sum_probs=13.3
Q ss_pred hhhhhHHHhhhhhhHHhHHHHHH
Q 008628 498 DWKLAMLGYASGVVIGLSIGYMA 520 (559)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~ 520 (559)
++..+++++..|+.+..++++++
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~L 30 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILAL 30 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666655555555
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=58.54 E-value=26 Score=26.32 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=21.4
Q ss_pred CCccchhhcCCCCCCEEEcccCcCCCCCCccCCCCCCccEEEeeC
Q 008628 109 QGTIPQTYAKGCNLSYLRLSGNHLEGPLPPSLINCVKLHFLDVGN 153 (559)
Q Consensus 109 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 153 (559)
+.+...+|.++.+|+.+.+-.+ ++.+-..+|.+|.+|+.+.+..
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3334445555555555555443 2223334555555555555544
No 168
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=57.07 E-value=5 Score=24.92 Aligned_cols=16 Identities=38% Similarity=0.333 Sum_probs=8.2
Q ss_pred HhhhhhhHHhHHHHHH
Q 008628 505 GYASGVVIGLSIGYMA 520 (559)
Q Consensus 505 ~~~~~~~~~~~~~~~~ 520 (559)
++..+++.|+++++++
T Consensus 11 aIA~gVVgGv~~v~ii 26 (44)
T 2l2t_A 11 LIAAGVIGGLFILVIV 26 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eEEEeehHHHHHHHHH
Confidence 3556666555544333
No 169
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=54.43 E-value=12 Score=24.44 Aligned_cols=24 Identities=8% Similarity=0.104 Sum_probs=13.9
Q ss_pred chhhhhHHHhhhhhhHHhHHHHHH
Q 008628 497 FDWKLAMLGYASGVVIGLSIGYMA 520 (559)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~ 520 (559)
.++..+++++..|+.+..++++++
T Consensus 10 vp~wiIi~svl~GLllL~li~~~L 33 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAM 33 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666655555555
No 170
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=50.95 E-value=15 Score=26.30 Aligned_cols=6 Identities=17% Similarity=0.196 Sum_probs=2.2
Q ss_pred HHhhhh
Q 008628 504 LGYASG 509 (559)
Q Consensus 504 ~~~~~~ 509 (559)
.|++++
T Consensus 15 ~gvi~g 20 (79)
T 2knc_B 15 LSVMGA 20 (79)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 171
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=41.49 E-value=21 Score=21.34 Aligned_cols=14 Identities=14% Similarity=0.534 Sum_probs=7.1
Q ss_pred HHHhhhhhhHHhHH
Q 008628 503 MLGYASGVVIGLSI 516 (559)
Q Consensus 503 ~~~~~~~~~~~~~~ 516 (559)
+.|+++++++++.+
T Consensus 13 IAGiVvG~v~gv~l 26 (38)
T 2k1k_A 13 IVAVIFGLLLGAAL 26 (38)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHH
Confidence 35555555555443
No 172
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=39.70 E-value=50 Score=20.22 Aligned_cols=26 Identities=8% Similarity=0.120 Sum_probs=15.6
Q ss_pred chhhhhHHHhhhhhhHHhHHHHHHHh
Q 008628 497 FDWKLAMLGYASGVVIGLSIGYMAFV 522 (559)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (559)
.++..++.++..|+.+..+++++++.
T Consensus 8 vp~wiIi~s~l~GLllL~li~~~LwK 33 (42)
T 2k1a_A 8 IPIWWVLVGVLGGLLLLTILVLAMWK 33 (42)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666676666665555543
No 173
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=32.96 E-value=54 Score=19.31 Aligned_cols=17 Identities=6% Similarity=0.280 Sum_probs=7.3
Q ss_pred HHhhhhhhHHhHHHHHH
Q 008628 504 LGYASGVVIGLSIGYMA 520 (559)
Q Consensus 504 ~~~~~~~~~~~~~~~~~ 520 (559)
+++.++++++++++.++
T Consensus 9 valivalIiaIVVWtiv 25 (36)
T 1pi7_A 9 VALVVAIIIAIVVWSIV 25 (36)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33434444444444444
No 174
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=31.19 E-value=27 Score=19.98 Aligned_cols=9 Identities=33% Similarity=0.704 Sum_probs=3.4
Q ss_pred hhHHhHHHH
Q 008628 510 VVIGLSIGY 518 (559)
Q Consensus 510 ~~~~~~~~~ 518 (559)
+++|+++++
T Consensus 12 ~i~gl~vif 20 (40)
T 2l9u_A 12 VIAGLVVIF 20 (40)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 175
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=30.83 E-value=31 Score=23.27 Aligned_cols=12 Identities=33% Similarity=0.271 Sum_probs=4.7
Q ss_pred hhHHhHHHHHHH
Q 008628 510 VVIGLSIGYMAF 521 (559)
Q Consensus 510 ~~~~~~~~~~~~ 521 (559)
+.+.++++++++
T Consensus 18 ~~lll~~glcI~ 29 (70)
T 2klu_A 18 AGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333444443
Done!