Query 008629
Match_columns 559
No_of_seqs 223 out of 1371
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 14:34:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008629.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008629hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257 NADP+-dependent malic 100.0 2E-202 4E-207 1590.7 47.3 526 32-558 10-568 (582)
2 PLN03129 NADP-dependent malic 100.0 2E-193 4E-198 1558.2 51.6 511 49-559 39-581 (581)
3 PRK13529 malate dehydrogenase; 100.0 1E-193 2E-198 1555.6 49.3 509 47-559 12-561 (563)
4 PTZ00317 NADP-dependent malic 100.0 3E-191 7E-196 1535.0 49.7 508 45-554 12-559 (559)
5 COG0281 SfcA Malic enzyme [Ene 100.0 1E-115 2E-120 915.9 33.6 420 85-559 1-432 (432)
6 PRK12861 malic enzyme; Reviewe 100.0 4E-109 8E-114 926.2 34.6 364 132-548 34-420 (764)
7 PRK12862 malic enzyme; Reviewe 100.0 9E-109 2E-113 927.9 34.7 367 132-548 38-424 (763)
8 PRK07232 bifunctional malic en 100.0 1E-107 2E-112 915.4 34.9 366 132-547 30-415 (752)
9 cd05312 NAD_bind_1_malic_enz N 100.0 6E-100 1E-104 770.0 29.2 277 275-553 1-279 (279)
10 PF03949 Malic_M: Malic enzyme 100.0 1.6E-96 3E-101 737.2 20.9 252 275-528 1-255 (255)
11 cd00762 NAD_bind_malic_enz NAD 100.0 1.5E-93 3.3E-98 715.0 25.5 251 275-527 1-254 (254)
12 PF00390 malic: Malic enzyme, 100.0 9.6E-64 2.1E-68 478.1 8.4 150 116-265 1-182 (182)
13 cd05311 NAD_bind_2_malic_enz N 100.0 1.4E-58 3.1E-63 456.4 21.9 223 275-527 1-226 (226)
14 cd05191 NAD_bind_amino_acid_DH 98.9 3.4E-08 7.4E-13 83.8 11.5 86 277-414 1-86 (86)
15 PRK05476 S-adenosyl-L-homocyst 97.4 0.012 2.6E-07 64.4 19.2 120 267-417 173-302 (425)
16 TIGR01035 hemA glutamyl-tRNA r 97.2 0.0014 3.1E-08 71.0 9.5 121 276-417 158-280 (417)
17 PRK09414 glutamate dehydrogena 97.2 0.013 2.8E-07 64.5 16.8 185 225-429 142-357 (445)
18 PRK14031 glutamate dehydrogena 97.1 0.028 6E-07 62.0 17.8 122 225-359 138-275 (444)
19 cd05213 NAD_bind_Glutamyl_tRNA 97.0 0.0035 7.7E-08 65.2 9.9 177 210-417 93-276 (311)
20 PLN02477 glutamate dehydrogena 97.0 0.016 3.5E-07 63.2 15.1 182 225-429 116-324 (410)
21 cd05211 NAD_bind_Glu_Leu_Phe_V 96.9 0.011 2.4E-07 59.0 12.2 130 278-429 2-140 (217)
22 PRK00045 hemA glutamyl-tRNA re 96.9 0.0054 1.2E-07 66.5 10.1 120 277-417 161-283 (423)
23 cd00401 AdoHcyase S-adenosyl-L 96.8 0.0079 1.7E-07 65.6 10.8 129 267-429 163-302 (413)
24 PLN02494 adenosylhomocysteinas 96.7 0.023 5E-07 63.1 13.4 131 267-430 215-355 (477)
25 TIGR02853 spore_dpaA dipicolin 96.6 0.014 3.1E-07 60.4 10.8 138 276-442 128-265 (287)
26 PRK14982 acyl-ACP reductase; P 96.6 0.015 3.2E-07 62.0 11.0 113 278-418 134-250 (340)
27 cd01080 NAD_bind_m-THF_DH_Cycl 96.6 0.015 3.2E-07 56.1 10.0 92 282-417 27-119 (168)
28 PF01488 Shikimate_DH: Shikima 96.4 0.0037 8E-08 57.4 4.3 102 295-418 8-113 (135)
29 TIGR00936 ahcY adenosylhomocys 96.2 0.038 8.3E-07 60.3 11.5 128 267-427 156-293 (406)
30 PTZ00079 NADP-specific glutama 96.1 0.34 7.4E-06 53.8 17.8 176 225-418 147-358 (454)
31 PLN00203 glutamyl-tRNA reducta 96.1 0.021 4.6E-07 64.0 8.7 218 256-530 226-455 (519)
32 PTZ00075 Adenosylhomocysteinas 96.0 0.12 2.7E-06 57.4 14.5 123 267-417 215-344 (476)
33 cd01076 NAD_bind_1_Glu_DH NAD( 96.0 0.068 1.5E-06 53.8 11.3 123 276-417 8-140 (227)
34 PRK08306 dipicolinate synthase 96.0 0.058 1.3E-06 56.1 10.9 132 281-442 134-266 (296)
35 PRK14030 glutamate dehydrogena 95.8 0.34 7.4E-06 53.6 16.3 185 225-429 138-357 (445)
36 PRK14192 bifunctional 5,10-met 95.8 0.065 1.4E-06 55.7 10.3 108 277-428 137-249 (283)
37 COG0373 HemA Glutamyl-tRNA red 95.7 0.05 1.1E-06 59.5 9.6 253 211-531 94-361 (414)
38 cd05313 NAD_bind_2_Glu_DH NAD( 95.6 0.23 5E-06 51.2 13.3 134 277-429 16-167 (254)
39 PRK13940 glutamyl-tRNA reducta 95.6 0.044 9.5E-07 59.8 8.5 210 256-530 143-359 (414)
40 PRK14175 bifunctional 5,10-met 95.4 0.089 1.9E-06 55.0 9.8 96 277-416 136-232 (286)
41 PRK12549 shikimate 5-dehydroge 95.4 0.044 9.5E-07 56.7 7.5 90 284-390 112-203 (284)
42 PLN00106 malate dehydrogenase 95.4 0.098 2.1E-06 55.4 10.0 118 284-417 4-138 (323)
43 PF00670 AdoHcyase_NAD: S-aden 95.3 0.28 6E-06 47.5 11.9 121 276-429 3-123 (162)
44 cd01065 NAD_bind_Shikimate_DH 95.2 0.063 1.4E-06 49.0 7.2 108 284-417 4-120 (155)
45 cd01078 NAD_bind_H4MPT_DH NADP 95.0 0.12 2.6E-06 49.7 8.7 54 278-343 7-61 (194)
46 TIGR00518 alaDH alanine dehydr 94.9 0.079 1.7E-06 56.8 7.8 95 297-415 165-268 (370)
47 cd01075 NAD_bind_Leu_Phe_Val_D 94.8 0.19 4.1E-06 49.4 9.7 122 278-429 5-129 (200)
48 PRK00676 hemA glutamyl-tRNA re 94.7 0.18 3.9E-06 53.9 9.7 122 255-418 136-265 (338)
49 TIGR01809 Shik-DH-AROM shikima 94.4 0.088 1.9E-06 54.3 6.6 104 267-398 99-209 (282)
50 PF03807 F420_oxidored: NADP o 94.1 0.067 1.4E-06 45.3 4.2 95 301-416 1-96 (96)
51 PRK08293 3-hydroxybutyryl-CoA 94.1 0.11 2.3E-06 53.3 6.4 123 300-447 4-148 (287)
52 PRK10792 bifunctional 5,10-met 94.0 0.6 1.3E-05 48.9 11.6 93 278-414 138-231 (285)
53 PF00208 ELFV_dehydrog: Glutam 93.8 0.14 3E-06 52.2 6.5 128 275-417 7-151 (244)
54 PRK05086 malate dehydrogenase; 93.7 0.38 8.3E-06 50.5 9.6 105 300-417 1-121 (312)
55 TIGR02356 adenyl_thiF thiazole 93.4 0.13 2.8E-06 50.6 5.3 38 295-343 17-54 (202)
56 cd05212 NAD_bind_m-THF_DH_Cycl 93.3 0.67 1.4E-05 43.6 9.6 89 280-411 9-97 (140)
57 cd05296 GH4_P_beta_glucosidase 93.1 0.17 3.6E-06 55.4 6.1 126 300-440 1-166 (419)
58 PRK09424 pntA NAD(P) transhydr 93.0 0.58 1.3E-05 52.7 10.3 106 296-424 162-296 (509)
59 PF00056 Ldh_1_N: lactate/mala 93.0 0.071 1.5E-06 49.6 2.6 104 301-417 2-121 (141)
60 PRK08328 hypothetical protein; 92.9 0.06 1.3E-06 54.0 2.2 120 261-418 7-131 (231)
61 TIGR02354 thiF_fam2 thiamine b 92.9 0.17 3.7E-06 49.9 5.4 108 295-422 17-127 (200)
62 cd00650 LDH_MDH_like NAD-depen 92.8 0.22 4.7E-06 50.5 6.0 127 302-441 1-145 (263)
63 PRK14191 bifunctional 5,10-met 92.7 0.41 8.9E-06 50.2 8.1 83 279-399 137-220 (285)
64 PRK06129 3-hydroxyacyl-CoA deh 92.4 0.45 9.9E-06 49.3 8.0 38 453-490 184-221 (308)
65 PRK08223 hypothetical protein; 92.4 0.25 5.5E-06 51.7 6.1 57 258-343 4-60 (287)
66 cd05291 HicDH_like L-2-hydroxy 92.2 0.5 1.1E-05 49.2 8.0 125 301-442 2-144 (306)
67 PRK00257 erythronate-4-phospha 92.1 1.1 2.3E-05 48.8 10.6 158 278-476 95-264 (381)
68 PRK12749 quinate/shikimate deh 92.0 0.32 7E-06 50.6 6.3 49 284-343 109-157 (288)
69 PRK08605 D-lactate dehydrogena 92.0 2.6 5.6E-05 44.6 13.2 122 265-415 90-237 (332)
70 PRK05600 thiamine biosynthesis 91.8 0.38 8.3E-06 51.8 6.8 102 295-412 37-162 (370)
71 PTZ00325 malate dehydrogenase; 91.7 1.1 2.3E-05 47.6 9.8 107 297-417 6-128 (321)
72 PRK06035 3-hydroxyacyl-CoA deh 91.7 2.8 6E-05 43.1 12.6 32 300-343 4-35 (291)
73 PRK07531 bifunctional 3-hydrox 91.5 2.4 5.3E-05 47.2 12.8 123 300-447 5-144 (495)
74 PLN02928 oxidoreductase family 91.4 2 4.3E-05 45.9 11.6 139 276-438 120-284 (347)
75 cd01079 NAD_bind_m-THF_DH NAD 91.3 1.4 3.1E-05 43.9 9.7 103 280-399 34-147 (197)
76 PRK12548 shikimate 5-dehydroge 91.3 0.55 1.2E-05 48.6 7.1 58 267-343 102-159 (289)
77 PRK14027 quinate/shikimate deh 91.1 0.44 9.6E-06 49.5 6.2 57 268-343 104-160 (283)
78 PTZ00082 L-lactate dehydrogena 91.1 0.81 1.7E-05 48.3 8.2 125 299-441 6-154 (321)
79 PRK00066 ldh L-lactate dehydro 90.9 0.5 1.1E-05 49.7 6.4 126 300-442 7-149 (315)
80 PRK08762 molybdopterin biosynt 90.8 0.36 7.8E-06 51.7 5.4 38 295-343 131-168 (376)
81 PRK15438 erythronate-4-phospha 90.6 2.2 4.8E-05 46.4 11.1 116 277-428 94-217 (378)
82 PRK09260 3-hydroxybutyryl-CoA 90.3 0.58 1.3E-05 47.9 6.2 32 300-343 2-33 (288)
83 PRK12475 thiamine/molybdopteri 90.3 0.39 8.5E-06 51.1 5.1 39 295-344 20-58 (338)
84 PRK07878 molybdopterin biosynt 90.1 0.61 1.3E-05 50.5 6.4 38 295-343 38-75 (392)
85 PTZ00117 malate dehydrogenase; 90.1 1.3 2.8E-05 46.7 8.6 126 298-441 4-148 (319)
86 PRK14194 bifunctional 5,10-met 90.1 1.7 3.8E-05 45.9 9.5 93 278-414 138-231 (301)
87 cd05197 GH4_glycoside_hydrolas 90.1 0.62 1.4E-05 51.2 6.5 125 300-440 1-166 (425)
88 PRK15076 alpha-galactosidase; 90.0 0.7 1.5E-05 50.8 6.8 129 300-444 2-174 (431)
89 TIGR02992 ectoine_eutC ectoine 90.0 1.3 2.8E-05 46.7 8.6 115 285-426 117-237 (326)
90 PRK14189 bifunctional 5,10-met 90.0 1.2 2.6E-05 46.8 8.2 84 278-399 137-221 (285)
91 PF00899 ThiF: ThiF family; I 89.9 0.52 1.1E-05 42.8 4.9 35 298-343 1-35 (135)
92 cd05297 GH4_alpha_glucosidase_ 89.9 0.88 1.9E-05 49.8 7.5 126 301-442 2-170 (423)
93 PRK00258 aroE shikimate 5-dehy 89.9 0.72 1.6E-05 47.3 6.4 87 284-390 107-196 (278)
94 PRK14619 NAD(P)H-dependent gly 89.8 2.5 5.4E-05 43.9 10.4 33 299-343 4-36 (308)
95 PRK06130 3-hydroxybutyryl-CoA 89.7 1.1 2.5E-05 46.1 7.8 32 300-343 5-36 (311)
96 PRK14176 bifunctional 5,10-met 89.7 1.5 3.3E-05 46.0 8.7 84 278-399 143-227 (287)
97 COG0334 GdhA Glutamate dehydro 89.6 8.2 0.00018 42.6 14.4 174 225-418 116-317 (411)
98 PF02826 2-Hacid_dh_C: D-isome 89.5 1.2 2.5E-05 42.7 7.2 115 290-436 27-147 (178)
99 COG0578 GlpA Glycerol-3-phosph 89.5 2.1 4.5E-05 48.6 10.1 163 297-532 10-179 (532)
100 PF01210 NAD_Gly3P_dh_N: NAD-d 89.3 0.56 1.2E-05 44.0 4.7 85 301-405 1-93 (157)
101 PRK14178 bifunctional 5,10-met 89.3 1.1 2.4E-05 46.8 7.3 85 277-399 130-215 (279)
102 PRK14851 hypothetical protein; 89.3 1.4 3E-05 51.4 8.8 122 295-433 39-194 (679)
103 PRK07688 thiamine/molybdopteri 89.2 0.5 1.1E-05 50.3 4.9 38 295-343 20-57 (339)
104 COG0169 AroE Shikimate 5-dehyd 88.9 0.88 1.9E-05 47.6 6.3 48 285-343 110-159 (283)
105 cd00704 MDH Malate dehydrogena 88.8 1.8 4E-05 45.8 8.7 110 301-417 2-129 (323)
106 COG0111 SerA Phosphoglycerate 88.5 3.3 7.1E-05 44.1 10.3 111 267-402 89-224 (324)
107 PF02056 Glyco_hydro_4: Family 88.3 0.79 1.7E-05 45.2 5.1 109 301-423 1-151 (183)
108 PRK06223 malate dehydrogenase; 88.2 1.1 2.5E-05 46.2 6.5 120 300-444 3-148 (307)
109 cd05298 GH4_GlvA_pagL_like Gly 87.3 1.1 2.4E-05 49.5 6.1 130 300-444 1-171 (437)
110 TIGR03140 AhpF alkyl hydropero 87.0 1.9 4.2E-05 47.9 7.9 93 225-320 130-233 (515)
111 TIGR01915 npdG NADPH-dependent 86.6 2.4 5.3E-05 41.8 7.5 96 301-419 2-106 (219)
112 PRK14183 bifunctional 5,10-met 86.5 2.6 5.7E-05 44.2 8.0 85 277-399 135-220 (281)
113 PRK05597 molybdopterin biosynt 86.5 2 4.3E-05 46.0 7.3 38 295-343 24-61 (355)
114 PRK12550 shikimate 5-dehydroge 86.2 1.6 3.4E-05 45.2 6.2 56 268-343 100-155 (272)
115 cd01336 MDH_cytoplasmic_cytoso 86.1 5.1 0.00011 42.4 10.1 122 300-431 3-142 (325)
116 PF01262 AlaDh_PNT_C: Alanine 86.1 0.25 5.5E-06 46.9 0.3 89 297-402 18-130 (168)
117 PRK08644 thiamine biosynthesis 86.1 0.8 1.7E-05 45.6 3.8 38 295-343 24-61 (212)
118 PRK07411 hypothetical protein; 86.0 1.9 4.2E-05 46.7 7.0 38 295-343 34-71 (390)
119 cd01337 MDH_glyoxysomal_mitoch 86.0 2.6 5.6E-05 44.6 7.8 102 301-417 2-120 (310)
120 TIGR00872 gnd_rel 6-phosphoglu 85.9 2.3 5.1E-05 44.0 7.3 99 301-425 2-102 (298)
121 PRK02842 light-independent pro 85.6 8.6 0.00019 42.1 11.8 176 163-387 176-368 (427)
122 PRK08374 homoserine dehydrogen 85.6 4.2 9.1E-05 43.3 9.2 105 300-411 3-120 (336)
123 PRK14179 bifunctional 5,10-met 85.6 4.6 9.9E-05 42.5 9.3 93 278-414 137-230 (284)
124 cd01492 Aos1_SUMO Ubiquitin ac 85.6 0.82 1.8E-05 44.9 3.6 76 295-387 17-96 (197)
125 PRK14190 bifunctional 5,10-met 85.4 3.1 6.8E-05 43.7 7.9 85 277-399 136-221 (284)
126 PF02882 THF_DHG_CYH_C: Tetrah 85.3 4.1 9E-05 39.3 8.2 85 277-399 14-99 (160)
127 cd00757 ThiF_MoeB_HesA_family 85.3 1 2.2E-05 45.0 4.1 104 295-417 17-123 (228)
128 TIGR00561 pntA NAD(P) transhyd 85.2 1.7 3.8E-05 49.0 6.4 101 297-415 162-285 (511)
129 PRK07574 formate dehydrogenase 85.1 8.1 0.00018 42.2 11.2 142 294-468 187-335 (385)
130 TIGR01763 MalateDH_bact malate 85.1 2.1 4.6E-05 44.8 6.6 124 300-441 2-144 (305)
131 PRK14184 bifunctional 5,10-met 85.1 2.8 6.1E-05 44.1 7.4 88 278-399 136-224 (286)
132 PRK14172 bifunctional 5,10-met 84.9 6 0.00013 41.5 9.7 83 279-399 138-221 (278)
133 PRK11880 pyrroline-5-carboxyla 84.9 3.2 6.9E-05 41.7 7.6 120 300-447 3-122 (267)
134 PRK15317 alkyl hydroperoxide r 84.8 2.6 5.7E-05 46.9 7.6 85 247-343 148-243 (517)
135 TIGR02355 moeB molybdopterin s 84.6 1.1 2.3E-05 45.5 4.0 103 295-417 20-126 (240)
136 PRK08291 ectoine utilization p 84.5 3.4 7.4E-05 43.6 7.9 115 285-426 120-240 (330)
137 PRK14177 bifunctional 5,10-met 84.4 4.5 9.8E-05 42.5 8.6 82 280-399 140-222 (284)
138 PRK13243 glyoxylate reductase; 84.4 9.6 0.00021 40.4 11.2 140 294-470 145-292 (333)
139 PRK14618 NAD(P)H-dependent gly 84.4 1.5 3.2E-05 45.7 5.1 32 300-343 5-36 (328)
140 TIGR01772 MDH_euk_gproteo mala 84.3 6.6 0.00014 41.6 9.9 126 301-441 1-146 (312)
141 cd01338 MDH_choloroplast_like 83.9 6 0.00013 41.9 9.4 110 300-417 3-131 (322)
142 PRK14188 bifunctional 5,10-met 83.7 3.5 7.6E-05 43.5 7.5 83 278-398 137-220 (296)
143 cd01485 E1-1_like Ubiquitin ac 83.3 1.1 2.3E-05 44.1 3.3 74 295-385 15-94 (198)
144 TIGR02279 PaaC-3OHAcCoADH 3-hy 83.1 15 0.00033 41.3 12.6 36 454-489 186-221 (503)
145 PRK14174 bifunctional 5,10-met 83.0 4 8.7E-05 43.1 7.6 95 279-413 139-234 (295)
146 COG0686 Ald Alanine dehydrogen 82.9 2.2 4.7E-05 45.8 5.5 106 297-426 166-290 (371)
147 PLN02306 hydroxypyruvate reduc 82.8 10 0.00022 41.4 10.8 167 294-496 160-345 (386)
148 PRK05690 molybdopterin biosynt 82.4 1.7 3.6E-05 44.2 4.4 38 295-343 28-65 (245)
149 PRK07634 pyrroline-5-carboxyla 82.4 2.1 4.7E-05 42.2 5.1 118 298-440 3-121 (245)
150 PRK06436 glycerate dehydrogena 82.3 16 0.00035 38.5 11.8 92 294-417 117-212 (303)
151 PRK14106 murD UDP-N-acetylmura 82.2 4.3 9.3E-05 43.9 7.7 114 296-441 2-116 (450)
152 PLN02516 methylenetetrahydrofo 82.2 6.3 0.00014 41.8 8.6 85 277-399 145-230 (299)
153 PRK00094 gpsA NAD(P)H-dependen 82.1 2.3 4.9E-05 43.6 5.3 102 301-418 3-109 (325)
154 cd01339 LDH-like_MDH L-lactate 81.8 2.9 6.2E-05 43.3 5.9 118 302-441 1-141 (300)
155 PRK14187 bifunctional 5,10-met 81.8 9.6 0.00021 40.3 9.8 85 277-399 138-223 (294)
156 PRK15116 sulfur acceptor prote 81.5 4.3 9.2E-05 42.2 7.0 108 295-420 26-136 (268)
157 PRK07066 3-hydroxybutyryl-CoA 81.5 4.1 8.9E-05 43.3 7.1 31 300-342 8-38 (321)
158 PRK05808 3-hydroxybutyryl-CoA 81.4 28 0.0006 35.5 12.9 32 300-343 4-35 (282)
159 TIGR01759 MalateDH-SF1 malate 81.4 8.6 0.00019 40.9 9.4 111 300-417 4-132 (323)
160 PRK14166 bifunctional 5,10-met 81.3 6.3 0.00014 41.4 8.2 85 277-399 135-220 (282)
161 PRK12921 2-dehydropantoate 2-r 81.2 4.3 9.3E-05 41.3 6.9 101 301-418 2-106 (305)
162 cd05290 LDH_3 A subgroup of L- 81.2 4.5 9.8E-05 42.6 7.2 102 301-417 1-122 (307)
163 cd01483 E1_enzyme_family Super 81.0 2.1 4.5E-05 39.1 4.1 69 301-386 1-73 (143)
164 PRK14171 bifunctional 5,10-met 81.0 7.1 0.00015 41.2 8.5 86 276-399 136-222 (288)
165 PRK01710 murD UDP-N-acetylmura 80.6 10 0.00022 41.7 9.9 118 297-453 12-130 (458)
166 cd00755 YgdL_like Family of ac 80.6 1.8 4E-05 43.8 3.9 37 296-343 8-44 (231)
167 cd01487 E1_ThiF_like E1_ThiF_l 80.4 2.1 4.7E-05 41.1 4.2 32 301-343 1-32 (174)
168 PRK06522 2-dehydropantoate 2-r 80.2 5.7 0.00012 40.2 7.4 100 301-417 2-103 (304)
169 TIGR01381 E1_like_apg7 E1-like 80.0 1.7 3.7E-05 50.3 3.9 40 295-345 334-373 (664)
170 TIGR01758 MDH_euk_cyt malate d 79.8 10 0.00022 40.2 9.4 135 301-445 1-155 (324)
171 PRK14193 bifunctional 5,10-met 79.8 7.1 0.00015 41.1 8.0 86 278-399 137-223 (284)
172 KOG0029 Amine oxidase [Seconda 79.5 1 2.2E-05 50.6 1.8 25 297-321 13-37 (501)
173 PTZ00345 glycerol-3-phosphate 79.5 7.5 0.00016 42.1 8.3 24 297-320 9-32 (365)
174 PRK06476 pyrroline-5-carboxyla 79.5 19 0.00041 36.3 10.8 95 301-417 2-96 (258)
175 PRK06141 ornithine cyclodeamin 79.3 8.5 0.00018 40.4 8.5 105 297-426 123-232 (314)
176 PRK07530 3-hydroxybutyryl-CoA 79.3 9.5 0.00021 39.1 8.7 32 300-343 5-36 (292)
177 PRK14185 bifunctional 5,10-met 79.3 12 0.00026 39.6 9.5 88 278-399 136-224 (293)
178 PF07992 Pyr_redox_2: Pyridine 79.2 2.9 6.4E-05 39.1 4.6 32 301-344 1-32 (201)
179 PRK15469 ghrA bifunctional gly 79.0 16 0.00034 38.6 10.4 140 295-468 132-277 (312)
180 PRK09310 aroDE bifunctional 3- 79.0 3.9 8.4E-05 45.6 6.2 48 284-343 317-364 (477)
181 TIGR00507 aroE shikimate 5-deh 79.0 4.5 9.7E-05 41.3 6.2 57 267-343 93-149 (270)
182 PRK14170 bifunctional 5,10-met 79.0 9.6 0.00021 40.2 8.6 85 277-399 135-220 (284)
183 TIGR01408 Ube1 ubiquitin-activ 78.5 0.92 2E-05 55.0 1.2 43 295-343 415-457 (1008)
184 PLN03139 formate dehydrogenase 78.2 15 0.00033 40.1 10.3 141 294-468 194-342 (386)
185 PRK05442 malate dehydrogenase; 78.2 13 0.00028 39.6 9.6 110 301-417 6-133 (326)
186 TIGR03366 HpnZ_proposed putati 78.1 18 0.00038 36.5 10.1 47 284-342 107-153 (280)
187 PRK09599 6-phosphogluconate de 78.0 10 0.00022 39.2 8.6 93 301-417 2-97 (301)
188 PRK14168 bifunctional 5,10-met 77.9 8.9 0.00019 40.6 8.1 97 277-413 139-236 (297)
189 PRK06153 hypothetical protein; 77.7 4.2 9.1E-05 44.6 5.8 101 295-417 172-278 (393)
190 PRK08410 2-hydroxyacid dehydro 77.7 21 0.00045 37.6 10.8 135 266-436 85-252 (311)
191 PRK14169 bifunctional 5,10-met 77.3 16 0.00035 38.4 9.7 85 277-399 134-219 (282)
192 PRK06487 glycerate dehydrogena 77.1 18 0.00039 38.2 10.2 157 295-495 144-308 (317)
193 PRK08268 3-hydroxy-acyl-CoA de 77.0 8.5 0.00018 43.3 8.1 97 378-488 112-222 (507)
194 cd05293 LDH_1 A subgroup of L- 76.8 7.7 0.00017 40.9 7.3 125 300-442 4-147 (312)
195 KOG0685 Flavin-containing amin 76.8 1.2 2.6E-05 49.8 1.3 26 295-320 17-42 (498)
196 PRK07680 late competence prote 76.7 4.9 0.00011 40.8 5.7 98 301-418 2-100 (273)
197 PRK02472 murD UDP-N-acetylmura 76.7 8.8 0.00019 41.5 7.9 35 297-343 3-37 (447)
198 COG0345 ProC Pyrroline-5-carbo 76.7 12 0.00025 39.1 8.5 106 300-432 2-108 (266)
199 PRK06407 ornithine cyclodeamin 76.5 14 0.0003 38.8 9.1 105 298-427 116-226 (301)
200 PRK12480 D-lactate dehydrogena 76.4 10 0.00022 40.3 8.1 91 294-415 141-235 (330)
201 TIGR01285 nifN nitrogenase mol 75.5 11 0.00023 41.6 8.2 83 288-388 300-382 (432)
202 PRK00141 murD UDP-N-acetylmura 75.4 12 0.00027 41.3 8.8 36 296-343 12-47 (473)
203 PRK07679 pyrroline-5-carboxyla 75.4 42 0.00091 34.3 12.1 98 299-417 3-102 (279)
204 cd05294 LDH-like_MDH_nadp A la 75.4 15 0.00034 38.5 9.1 103 301-417 2-124 (309)
205 PRK13581 D-3-phosphoglycerate 74.9 53 0.0011 37.2 13.7 195 266-498 86-305 (526)
206 TIGR02371 ala_DH_arch alanine 74.7 18 0.00039 38.3 9.4 104 298-426 127-235 (325)
207 PRK14181 bifunctional 5,10-met 74.5 14 0.00029 39.1 8.3 89 277-399 131-220 (287)
208 PRK14167 bifunctional 5,10-met 74.1 19 0.00041 38.2 9.3 87 279-399 137-224 (297)
209 PRK14180 bifunctional 5,10-met 73.8 15 0.00033 38.6 8.5 86 276-399 135-221 (282)
210 KOG1495 Lactate dehydrogenase 73.8 8.4 0.00018 40.8 6.5 130 295-447 16-169 (332)
211 PLN02616 tetrahydrofolate dehy 73.7 13 0.00029 40.4 8.2 83 279-399 211-294 (364)
212 PRK07340 ornithine cyclodeamin 73.6 22 0.00048 37.2 9.7 104 297-426 123-230 (304)
213 PRK12490 6-phosphogluconate de 73.4 15 0.00033 38.0 8.3 94 301-417 2-97 (299)
214 PF01113 DapB_N: Dihydrodipico 73.4 6.2 0.00013 35.8 4.9 96 300-412 1-97 (124)
215 KOG2337 Ubiquitin activating E 72.7 3.2 6.9E-05 47.0 3.3 38 297-345 338-375 (669)
216 TIGR01283 nifE nitrogenase mol 72.6 12 0.00026 41.2 7.9 84 288-386 315-402 (456)
217 PRK10886 DnaA initiator-associ 72.3 16 0.00035 36.2 7.9 87 297-402 39-130 (196)
218 cd05292 LDH_2 A subgroup of L- 72.3 11 0.00025 39.3 7.2 122 301-443 2-144 (308)
219 PRK14182 bifunctional 5,10-met 72.1 24 0.00053 37.2 9.5 83 279-399 137-220 (282)
220 PRK14173 bifunctional 5,10-met 72.0 18 0.0004 38.1 8.6 84 278-399 134-218 (287)
221 PF00070 Pyr_redox: Pyridine n 71.9 7.4 0.00016 32.1 4.6 35 301-347 1-35 (80)
222 cd01491 Ube1_repeat1 Ubiquitin 71.9 3.6 7.8E-05 43.1 3.4 38 295-343 15-52 (286)
223 PLN02527 aspartate carbamoyltr 71.8 1.3E+02 0.0028 31.9 14.9 129 239-389 94-228 (306)
224 TIGR01327 PGDH D-3-phosphoglyc 71.6 1.4E+02 0.003 33.9 16.0 195 266-497 84-303 (525)
225 COG0039 Mdh Malate/lactate deh 71.5 12 0.00025 40.1 7.0 108 300-430 1-126 (313)
226 PRK07231 fabG 3-ketoacyl-(acyl 71.4 8.8 0.00019 37.0 5.8 36 296-343 2-38 (251)
227 PF13738 Pyr_redox_3: Pyridine 71.2 4.6 9.9E-05 38.0 3.7 30 303-343 1-30 (203)
228 PRK08229 2-dehydropantoate 2-r 71.1 9.4 0.0002 39.7 6.3 102 300-418 3-111 (341)
229 PRK09880 L-idonate 5-dehydroge 70.9 31 0.00067 35.8 10.0 44 287-342 159-202 (343)
230 PF02737 3HCDH_N: 3-hydroxyacy 70.5 6 0.00013 38.2 4.4 111 301-430 1-125 (180)
231 PRK09754 phenylpropionate diox 70.5 6.2 0.00013 42.1 4.9 36 298-343 2-37 (396)
232 cd01486 Apg7 Apg7 is an E1-lik 70.4 5.3 0.00012 42.5 4.3 32 301-343 1-32 (307)
233 cd01484 E1-2_like Ubiquitin ac 70.4 5.5 0.00012 40.5 4.2 32 301-343 1-32 (234)
234 PRK12439 NAD(P)H-dependent gly 70.3 7.6 0.00017 41.1 5.5 22 299-320 7-28 (341)
235 PF02423 OCD_Mu_crystall: Orni 70.1 7.2 0.00016 41.0 5.2 103 299-426 128-237 (313)
236 COG1486 CelF Alpha-galactosida 70.1 4.6 0.0001 44.9 3.9 124 298-436 2-166 (442)
237 PF01494 FAD_binding_3: FAD bi 70.0 5.7 0.00012 39.9 4.3 34 300-345 2-35 (356)
238 cd01979 Pchlide_reductase_N Pc 70.0 27 0.00059 37.7 9.7 123 163-320 165-297 (396)
239 COG0190 FolD 5,10-methylene-te 69.8 18 0.00039 38.2 7.9 130 231-399 74-219 (283)
240 PRK14186 bifunctional 5,10-met 69.6 24 0.00051 37.5 8.8 83 279-399 138-221 (297)
241 PRK08618 ornithine cyclodeamin 69.3 22 0.00049 37.4 8.7 104 298-428 126-235 (325)
242 PRK06823 ornithine cyclodeamin 69.3 30 0.00064 36.7 9.5 105 298-427 127-236 (315)
243 COG1250 FadB 3-hydroxyacyl-CoA 69.1 1.2E+02 0.0026 32.4 14.0 140 371-529 101-249 (307)
244 KOG0069 Glyoxylate/hydroxypyru 69.0 26 0.00057 37.8 9.1 109 277-414 120-253 (336)
245 COG0476 ThiF Dinucleotide-util 68.9 6.5 0.00014 39.7 4.4 38 295-343 26-63 (254)
246 PRK15409 bifunctional glyoxyla 68.7 41 0.00089 35.7 10.5 141 294-469 140-288 (323)
247 PTZ00142 6-phosphogluconate de 68.5 8.5 0.00018 43.0 5.6 97 301-417 3-104 (470)
248 PRK06046 alanine dehydrogenase 68.5 28 0.00061 36.8 9.2 104 298-427 128-237 (326)
249 TIGR00873 gnd 6-phosphoglucona 68.5 11 0.00025 42.0 6.5 95 301-415 1-99 (467)
250 PLN02520 bifunctional 3-dehydr 68.1 11 0.00024 42.7 6.4 38 294-343 374-411 (529)
251 cd01488 Uba3_RUB Ubiquitin act 67.7 6.4 0.00014 41.5 4.2 32 301-343 1-32 (291)
252 cd01974 Nitrogenase_MoFe_beta 67.2 19 0.00041 39.5 7.8 84 288-388 292-386 (435)
253 PRK11790 D-3-phosphoglycerate 67.1 1.4E+02 0.0029 32.9 14.3 193 265-498 96-319 (409)
254 PLN02602 lactate dehydrogenase 67.1 20 0.00044 38.6 7.9 123 300-441 38-180 (350)
255 PLN02819 lysine-ketoglutarate 67.0 29 0.00062 42.7 9.9 114 284-403 179-326 (1042)
256 PLN02897 tetrahydrofolate dehy 66.6 22 0.00048 38.5 8.0 84 278-399 193-277 (345)
257 PRK06932 glycerate dehydrogena 66.5 26 0.00057 36.9 8.5 139 294-469 142-289 (314)
258 KOG2250 Glutamate/leucine/phen 66.3 1.3E+02 0.0028 34.4 13.9 183 227-429 161-379 (514)
259 PLN02545 3-hydroxybutyryl-CoA 66.3 44 0.00096 34.3 9.9 32 300-343 5-36 (295)
260 COG1179 Dinucleotide-utilizing 66.2 5 0.00011 41.6 2.9 42 296-348 27-68 (263)
261 PRK14620 NAD(P)H-dependent gly 65.8 17 0.00037 37.8 6.9 31 301-343 2-32 (326)
262 TIGR01292 TRX_reduct thioredox 65.4 7.5 0.00016 38.6 4.0 31 301-343 2-32 (300)
263 PRK07502 cyclohexadienyl dehyd 65.4 22 0.00047 36.8 7.5 34 300-343 7-40 (307)
264 TIGR02622 CDP_4_6_dhtase CDP-g 65.3 17 0.00036 37.8 6.7 101 298-414 3-127 (349)
265 PRK07877 hypothetical protein; 64.7 15 0.00032 43.4 6.8 101 295-414 103-229 (722)
266 cd08237 ribitol-5-phosphate_DH 64.6 1.1E+02 0.0025 31.8 12.7 35 298-342 163-197 (341)
267 cd01489 Uba2_SUMO Ubiquitin ac 64.0 9 0.00019 40.7 4.5 32 301-343 1-32 (312)
268 PF03446 NAD_binding_2: NAD bi 63.9 6.2 0.00013 37.1 2.9 104 300-430 2-108 (163)
269 PF03447 NAD_binding_3: Homose 63.8 11 0.00024 33.3 4.4 88 306-411 1-88 (117)
270 PRK06270 homoserine dehydrogen 63.4 48 0.001 35.3 9.8 105 300-411 3-123 (341)
271 COG1063 Tdh Threonine dehydrog 62.8 13 0.00027 39.6 5.3 98 273-388 143-247 (350)
272 PRK11883 protoporphyrinogen ox 62.2 5 0.00011 42.7 2.2 22 300-321 1-22 (451)
273 PRK06719 precorrin-2 dehydroge 61.6 12 0.00025 35.7 4.3 36 296-343 10-45 (157)
274 TIGR01771 L-LDH-NAD L-lactate 61.5 17 0.00037 38.1 5.9 123 304-441 1-139 (299)
275 PRK01713 ornithine carbamoyltr 61.4 55 0.0012 35.1 9.8 138 230-387 91-233 (334)
276 TIGR02028 ChlP geranylgeranyl 61.1 9.5 0.00021 41.0 4.1 31 301-343 2-32 (398)
277 PF05834 Lycopene_cycl: Lycope 61.0 10 0.00022 40.4 4.3 35 302-346 2-36 (374)
278 PRK06718 precorrin-2 dehydroge 60.8 12 0.00026 37.0 4.4 35 296-342 7-41 (202)
279 PRK11730 fadB multifunctional 60.4 31 0.00067 40.5 8.4 107 373-488 413-527 (715)
280 PRK12570 N-acetylmuramic acid- 60.3 36 0.00077 35.8 8.1 37 379-417 127-165 (296)
281 PRK14476 nitrogenase molybdenu 60.1 27 0.00059 38.8 7.5 25 296-320 308-332 (455)
282 TIGR03376 glycerol3P_DH glycer 60.0 18 0.00039 38.8 5.9 20 301-320 1-20 (342)
283 TIGR02023 BchP-ChlP geranylger 60.0 10 0.00023 40.2 4.1 31 301-343 2-32 (388)
284 PLN02688 pyrroline-5-carboxyla 60.0 17 0.00036 36.5 5.4 94 301-417 2-98 (266)
285 COG2423 Predicted ornithine cy 59.4 47 0.001 35.8 8.8 122 282-429 115-241 (330)
286 cd03466 Nitrogenase_NifN_2 Nit 59.2 38 0.00083 37.1 8.4 95 296-417 297-400 (429)
287 COG0240 GpsA Glycerol-3-phosph 59.2 24 0.00053 38.0 6.6 83 300-402 2-92 (329)
288 TIGR01214 rmlD dTDP-4-dehydror 58.8 37 0.00081 33.7 7.6 60 301-390 1-61 (287)
289 PRK12409 D-amino acid dehydrog 58.6 12 0.00026 39.7 4.3 33 300-344 2-34 (410)
290 TIGR03169 Nterm_to_SelD pyridi 58.5 6.2 0.00013 41.2 2.1 36 301-345 1-36 (364)
291 PLN00112 malate dehydrogenase 58.5 35 0.00077 38.1 8.0 112 299-417 100-229 (444)
292 TIGR01470 cysG_Nterm siroheme 58.5 13 0.00029 36.8 4.3 36 296-343 6-41 (205)
293 PRK06184 hypothetical protein; 58.5 12 0.00026 41.2 4.4 34 298-343 2-35 (502)
294 PRK06847 hypothetical protein; 58.3 13 0.00028 38.7 4.4 22 299-320 4-25 (375)
295 cd00300 LDH_like L-lactate deh 57.8 30 0.00064 36.1 6.9 123 302-441 1-141 (300)
296 PRK13512 coenzyme A disulfide 57.5 10 0.00022 41.3 3.6 33 301-343 3-35 (438)
297 KOG2304 3-hydroxyacyl-CoA dehy 57.5 9.7 0.00021 39.5 3.2 32 300-343 12-43 (298)
298 PRK13938 phosphoheptose isomer 57.5 37 0.00081 33.6 7.3 104 298-416 44-150 (196)
299 COG1052 LdhA Lactate dehydroge 57.2 73 0.0016 34.1 9.9 165 292-495 139-312 (324)
300 PRK07236 hypothetical protein; 57.2 15 0.00032 38.8 4.7 24 297-320 4-27 (386)
301 PRK12429 3-hydroxybutyrate deh 57.1 37 0.0008 32.9 7.1 35 297-343 2-37 (258)
302 PRK08163 salicylate hydroxylas 56.4 14 0.0003 38.9 4.3 22 299-320 4-25 (396)
303 PRK15181 Vi polysaccharide bio 56.4 45 0.00097 34.8 8.1 105 293-414 9-141 (348)
304 PF13454 NAD_binding_9: FAD-NA 55.5 11 0.00024 35.1 3.1 36 303-345 1-36 (156)
305 PRK00536 speE spermidine synth 54.9 20 0.00043 37.3 5.0 102 299-443 73-175 (262)
306 TIGR00465 ilvC ketol-acid redu 54.9 39 0.00085 35.8 7.3 24 297-320 1-24 (314)
307 PRK09564 coenzyme A disulfide 54.8 17 0.00038 39.0 4.8 37 300-346 1-37 (444)
308 PRK06928 pyrroline-5-carboxyla 54.7 45 0.00097 34.3 7.6 98 300-417 2-101 (277)
309 PRK12771 putative glutamate sy 54.2 24 0.00051 39.9 5.9 36 296-343 134-169 (564)
310 TIGR03026 NDP-sugDHase nucleot 54.2 45 0.00097 36.2 7.8 31 301-343 2-32 (411)
311 PRK06475 salicylate hydroxylas 54.1 14 0.00031 39.3 4.0 21 300-320 3-23 (400)
312 COG0644 FixC Dehydrogenases (f 54.0 16 0.00034 39.2 4.3 35 300-346 4-38 (396)
313 PRK09126 hypothetical protein; 53.9 15 0.00034 38.5 4.2 22 299-320 3-24 (392)
314 PRK07233 hypothetical protein; 53.8 14 0.0003 39.0 3.8 31 301-343 1-31 (434)
315 KOG2018 Predicted dinucleotide 53.8 15 0.00033 39.6 4.0 40 295-345 70-109 (430)
316 PLN02172 flavin-containing mon 53.8 17 0.00037 40.4 4.6 25 296-320 7-31 (461)
317 PRK01438 murD UDP-N-acetylmura 53.7 19 0.0004 39.6 4.9 28 293-320 10-37 (480)
318 cd01976 Nitrogenase_MoFe_alpha 53.5 59 0.0013 35.7 8.7 87 286-388 287-378 (421)
319 PRK03803 murD UDP-N-acetylmura 53.5 35 0.00075 37.2 6.9 115 298-453 5-121 (448)
320 PRK04176 ribulose-1,5-biphosph 53.2 16 0.00034 37.3 4.0 34 299-344 25-58 (257)
321 COG5322 Predicted dehydrogenas 53.1 21 0.00045 37.9 4.8 46 275-320 143-189 (351)
322 PTZ00245 ubiquitin activating 52.9 13 0.00029 39.0 3.4 73 295-385 22-98 (287)
323 TIGR01316 gltA glutamate synth 52.9 19 0.00042 39.4 4.8 36 296-343 130-165 (449)
324 PRK07364 2-octaprenyl-6-methox 52.9 14 0.00031 39.0 3.8 22 299-320 18-39 (415)
325 cd01490 Ube1_repeat2 Ubiquitin 52.8 21 0.00045 39.8 5.0 37 301-343 1-37 (435)
326 PRK07819 3-hydroxybutyryl-CoA 52.7 17 0.00038 37.6 4.2 22 300-321 6-27 (286)
327 PF01266 DAO: FAD dependent ox 52.7 20 0.00043 36.0 4.6 33 301-345 1-33 (358)
328 PLN02268 probable polyamine ox 52.6 7 0.00015 41.9 1.4 20 301-320 2-21 (435)
329 PRK04965 NADH:flavorubredoxin 52.5 13 0.00029 39.2 3.4 35 300-344 3-37 (377)
330 TIGR01790 carotene-cycl lycope 52.4 16 0.00034 38.4 3.9 31 302-344 2-32 (388)
331 TIGR02440 FadJ fatty oxidation 52.1 1.7E+02 0.0038 34.4 12.6 155 372-548 404-567 (699)
332 PF03435 Saccharop_dh: Sacchar 52.0 7.4 0.00016 41.4 1.4 91 302-411 1-96 (386)
333 PRK03369 murD UDP-N-acetylmura 51.9 51 0.0011 36.7 8.0 89 297-410 10-98 (488)
334 PRK07589 ornithine cyclodeamin 51.9 1.2E+02 0.0026 32.8 10.5 105 298-427 128-239 (346)
335 PRK05749 3-deoxy-D-manno-octul 51.8 43 0.00093 35.8 7.2 37 370-411 312-349 (425)
336 PRK06249 2-dehydropantoate 2-r 51.8 44 0.00095 34.7 7.0 102 298-418 4-110 (313)
337 PRK11199 tyrA bifunctional cho 51.7 71 0.0015 34.5 8.8 33 299-343 98-131 (374)
338 cd01493 APPBP1_RUB Ubiquitin a 51.5 17 0.00037 40.3 4.1 38 295-343 16-53 (425)
339 COG2072 TrkA Predicted flavopr 51.4 18 0.0004 39.8 4.4 36 298-344 7-42 (443)
340 PRK05732 2-octaprenyl-6-methox 51.4 20 0.00042 37.6 4.4 36 299-343 3-38 (395)
341 PRK12769 putative oxidoreducta 51.0 19 0.0004 41.6 4.5 34 298-343 326-359 (654)
342 PRK12828 short chain dehydroge 50.9 31 0.00067 32.8 5.4 36 296-343 4-40 (239)
343 TIGR03693 ocin_ThiF_like putat 50.8 51 0.0011 38.5 7.8 104 259-390 101-215 (637)
344 PRK06753 hypothetical protein; 50.8 19 0.00041 37.5 4.2 20 301-320 2-21 (373)
345 COG0499 SAM1 S-adenosylhomocys 50.6 61 0.0013 35.8 7.9 120 272-426 185-306 (420)
346 PRK12810 gltD glutamate syntha 50.6 21 0.00045 39.3 4.7 34 298-343 142-175 (471)
347 PRK07045 putative monooxygenas 50.6 19 0.00042 37.9 4.3 21 300-320 6-26 (388)
348 PRK05866 short chain dehydroge 50.4 50 0.0011 33.8 7.1 39 294-343 35-73 (293)
349 PLN00093 geranylgeranyl diphos 50.3 18 0.0004 39.9 4.2 21 300-320 40-60 (450)
350 TIGR02032 GG-red-SF geranylger 49.9 20 0.00042 35.4 4.0 32 301-344 2-33 (295)
351 PRK12779 putative bifunctional 49.7 22 0.00049 43.1 5.1 39 297-347 304-346 (944)
352 PRK04663 murD UDP-N-acetylmura 49.4 67 0.0015 35.0 8.3 117 297-453 4-121 (438)
353 TIGR01181 dTDP_gluc_dehyt dTDP 49.2 74 0.0016 31.7 8.0 78 301-390 1-84 (317)
354 cd01977 Nitrogenase_VFe_alpha 48.9 77 0.0017 34.5 8.6 31 295-329 284-314 (415)
355 PRK07608 ubiquinone biosynthes 48.6 19 0.00042 37.6 3.8 32 300-343 6-37 (388)
356 PRK06416 dihydrolipoamide dehy 48.5 20 0.00044 39.0 4.1 33 300-344 5-37 (462)
357 PF13450 NAD_binding_8: NAD(P) 48.5 25 0.00054 28.7 3.7 30 304-345 1-30 (68)
358 KOG2012 Ubiquitin activating e 48.4 12 0.00026 44.6 2.5 130 262-437 411-552 (1013)
359 PF01946 Thi4: Thi4 family; PD 48.3 26 0.00057 36.0 4.5 34 299-344 17-50 (230)
360 PRK11154 fadJ multifunctional 48.2 2.1E+02 0.0045 33.8 12.4 107 373-488 410-524 (708)
361 TIGR01284 alt_nitrog_alph nitr 48.1 1E+02 0.0022 34.3 9.5 30 295-328 321-350 (457)
362 TIGR01505 tartro_sem_red 2-hyd 48.0 53 0.0012 33.6 6.9 31 301-343 1-31 (291)
363 PRK00683 murD UDP-N-acetylmura 47.9 83 0.0018 34.1 8.7 113 299-453 3-115 (418)
364 PRK12266 glpD glycerol-3-phosp 47.9 20 0.00044 40.0 4.1 33 300-344 7-39 (508)
365 cd01968 Nitrogenase_NifE_I Nit 47.9 28 0.00062 37.7 5.1 85 288-388 276-365 (410)
366 PRK07251 pyridine nucleotide-d 47.9 22 0.00048 38.5 4.3 33 300-344 4-36 (438)
367 PRK06392 homoserine dehydrogen 47.8 72 0.0016 34.1 8.0 83 301-388 2-90 (326)
368 PTZ00318 NADH dehydrogenase-li 47.7 15 0.00032 39.8 2.9 36 296-343 7-42 (424)
369 PRK12829 short chain dehydroge 47.7 64 0.0014 31.4 7.2 37 296-343 8-44 (264)
370 PF05511 ATP-synt_F6: Mitochon 47.7 17 0.00037 32.8 2.8 46 208-253 42-96 (99)
371 PRK05993 short chain dehydroge 47.6 41 0.00088 33.7 5.9 32 300-343 5-37 (277)
372 PLN02240 UDP-glucose 4-epimera 47.4 39 0.00084 34.8 5.8 107 296-414 2-132 (352)
373 PLN02463 lycopene beta cyclase 47.4 21 0.00046 39.5 4.1 32 300-343 29-60 (447)
374 PRK00048 dihydrodipicolinate r 46.9 1.1E+02 0.0025 31.1 9.0 88 300-412 2-90 (257)
375 TIGR01082 murC UDP-N-acetylmur 46.8 40 0.00086 36.8 6.0 110 301-453 1-112 (448)
376 COG0654 UbiH 2-polyprenyl-6-me 46.7 24 0.00051 37.6 4.2 33 299-343 2-34 (387)
377 TIGR01984 UbiH 2-polyprenyl-6- 46.3 20 0.00043 37.4 3.5 20 302-321 2-21 (382)
378 PLN02676 polyamine oxidase 46.2 50 0.0011 36.8 6.8 23 298-320 25-47 (487)
379 PRK10157 putative oxidoreducta 46.1 22 0.00048 38.6 4.0 21 300-320 6-26 (428)
380 PRK12314 gamma-glutamyl kinase 46.0 1.4E+02 0.0031 30.7 9.7 145 165-349 31-185 (266)
381 TIGR00031 UDP-GALP_mutase UDP- 46.0 24 0.00052 38.4 4.2 31 301-343 3-33 (377)
382 TIGR01373 soxB sarcosine oxida 45.9 30 0.00064 36.8 4.8 38 298-345 29-66 (407)
383 PRK14852 hypothetical protein; 45.8 20 0.00043 43.7 3.8 38 295-343 328-365 (989)
384 PRK08849 2-octaprenyl-3-methyl 45.7 26 0.00057 37.0 4.4 32 300-343 4-35 (384)
385 PRK08773 2-octaprenyl-3-methyl 45.6 20 0.00044 37.8 3.5 34 299-344 6-39 (392)
386 PRK11749 dihydropyrimidine deh 45.6 26 0.00057 38.2 4.5 34 298-343 139-172 (457)
387 PRK07588 hypothetical protein; 45.6 25 0.00054 37.1 4.2 20 301-320 2-21 (391)
388 TIGR01789 lycopene_cycl lycope 45.2 30 0.00065 37.1 4.7 36 302-347 2-37 (370)
389 PF01408 GFO_IDH_MocA: Oxidore 45.2 35 0.00075 29.6 4.4 90 301-411 2-91 (120)
390 PF13241 NAD_binding_7: Putati 45.1 17 0.00036 31.8 2.4 37 296-344 4-40 (103)
391 cd05006 SIS_GmhA Phosphoheptos 45.1 1.2E+02 0.0026 28.7 8.4 22 379-402 101-122 (177)
392 cd05007 SIS_Etherase N-acetylm 45.0 41 0.00088 34.6 5.5 38 378-417 117-156 (257)
393 PRK05441 murQ N-acetylmuramic 45.0 61 0.0013 34.1 6.9 38 379-418 131-170 (299)
394 TIGR00274 N-acetylmuramic acid 44.9 47 0.001 34.9 6.0 38 379-418 126-165 (291)
395 PRK08244 hypothetical protein; 44.9 25 0.00054 38.7 4.2 21 300-320 3-23 (493)
396 PF02254 TrkA_N: TrkA-N domain 44.8 13 0.00029 32.2 1.7 98 302-417 1-100 (116)
397 TIGR01179 galE UDP-glucose-4-e 44.8 85 0.0019 31.3 7.7 97 301-412 1-119 (328)
398 PRK09853 putative selenate red 44.6 26 0.00056 43.0 4.5 35 297-343 537-571 (1019)
399 PRK08294 phenol 2-monooxygenas 44.5 22 0.00048 41.0 3.8 35 298-343 31-65 (634)
400 TIGR00292 thiazole biosynthesi 44.4 28 0.0006 35.6 4.1 37 298-346 20-56 (254)
401 TIGR01988 Ubi-OHases Ubiquinon 44.4 24 0.00052 36.6 3.7 31 302-344 2-32 (385)
402 PRK12770 putative glutamate sy 44.3 34 0.00074 35.9 4.9 34 298-343 17-50 (352)
403 PLN02350 phosphogluconate dehy 44.3 56 0.0012 37.0 6.8 97 301-417 8-110 (493)
404 PRK08013 oxidoreductase; Provi 44.3 26 0.00057 37.3 4.1 33 299-343 3-35 (400)
405 PRK08020 ubiF 2-octaprenyl-3-m 44.3 24 0.00052 37.1 3.8 33 299-343 5-37 (391)
406 PRK08243 4-hydroxybenzoate 3-m 44.2 29 0.00062 36.9 4.4 22 299-320 2-23 (392)
407 PF06690 DUF1188: Protein of u 44.1 40 0.00087 35.0 5.1 90 293-417 38-128 (252)
408 PRK11259 solA N-methyltryptoph 43.9 28 0.00061 36.2 4.2 34 299-344 3-36 (376)
409 PRK07523 gluconate 5-dehydroge 43.8 61 0.0013 31.7 6.3 36 296-343 7-43 (255)
410 PRK12491 pyrroline-5-carboxyla 43.7 46 0.00099 34.3 5.6 35 300-342 3-37 (272)
411 PRK10262 thioredoxin reductase 43.7 21 0.00045 36.7 3.2 24 297-320 4-27 (321)
412 TIGR01377 soxA_mon sarcosine o 43.7 28 0.00061 36.2 4.1 33 301-345 2-34 (380)
413 PLN02695 GDP-D-mannose-3',5'-e 43.5 76 0.0016 33.8 7.4 97 298-414 20-137 (370)
414 TIGR02053 MerA mercuric reduct 43.5 27 0.00058 38.1 4.1 30 302-343 3-32 (463)
415 COG3380 Predicted NAD/FAD-depe 43.5 27 0.00057 37.3 3.8 32 301-344 3-34 (331)
416 COG0771 MurD UDP-N-acetylmuram 43.5 1.4E+02 0.0031 33.5 9.7 36 296-343 4-39 (448)
417 PRK07538 hypothetical protein; 43.5 27 0.00059 37.3 4.1 20 301-320 2-21 (413)
418 TIGR01282 nifD nitrogenase mol 43.4 45 0.00099 37.2 5.9 85 288-388 324-413 (466)
419 PRK12831 putative oxidoreducta 43.4 30 0.00064 38.3 4.5 34 298-343 139-172 (464)
420 PRK06185 hypothetical protein; 43.4 27 0.00059 36.9 4.1 34 299-344 6-39 (407)
421 PF13407 Peripla_BP_4: Peripla 43.4 53 0.0011 31.8 5.8 140 153-295 52-206 (257)
422 cd04951 GT1_WbdM_like This fam 43.4 2E+02 0.0044 28.7 10.1 37 370-411 255-291 (360)
423 PRK05714 2-octaprenyl-3-methyl 43.3 22 0.00048 37.7 3.4 31 301-343 4-34 (405)
424 PRK12814 putative NADPH-depend 43.3 29 0.00062 40.2 4.5 34 298-343 192-225 (652)
425 PRK06182 short chain dehydroge 43.3 38 0.00082 33.6 4.9 74 298-390 2-85 (273)
426 PRK12778 putative bifunctional 43.2 33 0.00071 40.3 5.0 35 297-343 429-463 (752)
427 TIGR01278 DPOR_BchB light-inde 43.1 70 0.0015 36.1 7.4 75 297-387 293-372 (511)
428 PRK08219 short chain dehydroge 43.1 88 0.0019 29.6 7.1 71 300-390 4-82 (227)
429 PRK13369 glycerol-3-phosphate 43.1 26 0.00057 38.9 4.0 32 300-343 7-38 (502)
430 PRK11101 glpA sn-glycerol-3-ph 42.8 29 0.00062 39.2 4.3 33 299-343 6-38 (546)
431 PRK13394 3-hydroxybutyrate deh 42.7 73 0.0016 31.0 6.7 36 296-343 4-40 (262)
432 TIGR01286 nifK nitrogenase mol 42.5 63 0.0014 36.7 6.9 123 165-320 234-384 (515)
433 PRK14806 bifunctional cyclohex 42.4 57 0.0012 38.0 6.8 93 300-414 4-97 (735)
434 PRK06912 acoL dihydrolipoamide 42.4 30 0.00064 37.9 4.3 31 301-343 2-32 (458)
435 COG1252 Ndh NADH dehydrogenase 42.4 25 0.00054 38.9 3.6 35 299-343 3-37 (405)
436 cd07205 Pat_PNPLA6_PNPLA7_NTE1 42.2 1.4E+02 0.0031 28.0 8.3 45 280-335 12-56 (175)
437 TIGR01350 lipoamide_DH dihydro 42.0 30 0.00064 37.6 4.1 30 301-342 3-32 (461)
438 PRK08010 pyridine nucleotide-d 41.9 28 0.00061 37.7 4.0 32 300-343 4-35 (441)
439 COG0529 CysC Adenylylsulfate k 41.8 23 0.0005 35.5 2.9 48 138-191 125-176 (197)
440 PRK12416 protoporphyrinogen ox 41.7 16 0.00035 39.6 2.1 22 300-321 2-23 (463)
441 PRK06834 hypothetical protein; 41.6 33 0.00072 38.2 4.5 35 298-344 2-36 (488)
442 PRK10892 D-arabinose 5-phospha 41.5 1.4E+02 0.003 31.1 8.9 83 300-417 48-132 (326)
443 TIGR03143 AhpF_homolog putativ 41.5 30 0.00064 39.2 4.2 32 301-344 6-37 (555)
444 PRK04690 murD UDP-N-acetylmura 41.4 33 0.0007 38.0 4.4 24 297-320 6-29 (468)
445 PRK14694 putative mercuric red 41.4 34 0.00073 37.6 4.5 34 298-343 5-38 (468)
446 PRK09466 metL bifunctional asp 41.4 74 0.0016 38.2 7.5 107 298-411 457-570 (810)
447 TIGR03315 Se_ygfK putative sel 41.3 30 0.00064 42.5 4.3 34 298-343 536-569 (1012)
448 TIGR01408 Ube1 ubiquitin-activ 41.3 22 0.00049 43.5 3.3 39 295-344 20-58 (1008)
449 PRK13301 putative L-aspartate 41.2 39 0.00084 35.5 4.6 117 300-440 3-122 (267)
450 PRK05868 hypothetical protein; 41.2 33 0.00071 36.4 4.3 21 300-320 2-22 (372)
451 PRK08850 2-octaprenyl-6-methox 41.2 32 0.00068 36.7 4.1 33 299-343 4-36 (405)
452 TIGR01317 GOGAT_sm_gam glutama 41.0 34 0.00075 38.0 4.5 34 298-343 142-175 (485)
453 COG0673 MviM Predicted dehydro 41.0 64 0.0014 33.1 6.3 94 299-411 3-102 (342)
454 PRK09987 dTDP-4-dehydrorhamnos 40.9 1E+02 0.0022 31.5 7.7 86 301-414 2-104 (299)
455 PRK05976 dihydrolipoamide dehy 40.9 33 0.00071 37.6 4.3 33 299-343 4-36 (472)
456 PRK11559 garR tartronate semia 40.9 96 0.0021 31.7 7.5 32 300-343 3-34 (296)
457 PRK03515 ornithine carbamoyltr 40.9 2E+02 0.0043 31.1 10.0 138 230-387 90-233 (336)
458 PRK07333 2-octaprenyl-6-methox 40.8 26 0.00056 36.9 3.4 20 301-320 3-22 (403)
459 TIGR01860 VNFD nitrogenase van 40.7 1.8E+02 0.0039 32.5 10.0 30 295-328 323-352 (461)
460 PRK00711 D-amino acid dehydrog 40.7 33 0.00071 36.3 4.2 31 301-343 2-32 (416)
461 TIGR01861 ANFD nitrogenase iro 40.7 2.6E+02 0.0056 32.0 11.3 30 295-328 324-353 (513)
462 PRK11728 hydroxyglutarate oxid 40.7 34 0.00074 36.3 4.3 34 300-343 3-36 (393)
463 PLN02568 polyamine oxidase 40.6 17 0.00037 41.2 2.1 24 298-321 4-27 (539)
464 TIGR00441 gmhA phosphoheptose 40.5 1.7E+02 0.0037 27.4 8.5 37 379-417 79-117 (154)
465 PRK06292 dihydrolipoamide dehy 40.4 34 0.00075 37.1 4.4 33 299-343 3-35 (460)
466 COG3349 Uncharacterized conser 40.3 22 0.00047 40.2 2.8 44 300-348 1-51 (485)
467 COG1748 LYS9 Saccharopine dehy 40.1 44 0.00094 36.8 5.0 85 300-403 2-90 (389)
468 PRK08132 FAD-dependent oxidore 39.8 31 0.00066 38.6 3.9 22 299-320 23-44 (547)
469 TIGR02360 pbenz_hydroxyl 4-hyd 39.7 35 0.00076 36.4 4.2 32 300-343 3-34 (390)
470 PRK07494 2-octaprenyl-6-methox 39.7 34 0.00074 35.9 4.1 34 299-344 7-40 (388)
471 PRK07067 sorbitol dehydrogenas 39.6 32 0.00069 33.7 3.6 79 296-390 3-91 (257)
472 PRK01747 mnmC bifunctional tRN 39.6 35 0.00075 39.4 4.4 33 300-344 261-293 (662)
473 PRK06138 short chain dehydroge 39.5 55 0.0012 31.7 5.2 37 296-343 2-38 (252)
474 TIGR03736 PRTRC_ThiF PRTRC sys 39.4 36 0.00078 35.1 4.0 46 298-344 10-55 (244)
475 PF12831 FAD_oxidored: FAD dep 39.4 35 0.00077 37.2 4.2 33 302-346 2-34 (428)
476 PLN02172 flavin-containing mon 39.2 37 0.0008 37.7 4.4 36 297-344 202-237 (461)
477 PRK09897 hypothetical protein; 39.2 37 0.00079 38.7 4.4 33 301-343 3-35 (534)
478 PRK06841 short chain dehydroge 39.1 57 0.0012 31.7 5.3 36 296-343 12-48 (255)
479 PRK11445 putative oxidoreducta 39.0 35 0.00076 35.8 4.0 20 301-320 3-22 (351)
480 PLN02852 ferredoxin-NADP+ redu 39.0 21 0.00046 40.2 2.5 42 292-343 19-60 (491)
481 TIGR03364 HpnW_proposed FAD de 39.0 34 0.00074 35.6 3.9 31 301-343 2-32 (365)
482 PRK07424 bifunctional sterol d 38.8 49 0.0011 36.4 5.2 57 261-343 155-211 (406)
483 TIGR03088 stp2 sugar transfera 38.7 2E+02 0.0044 29.6 9.5 36 371-411 266-301 (374)
484 cd05188 MDR Medium chain reduc 38.5 77 0.0017 30.4 6.0 45 287-343 123-167 (271)
485 PF02558 ApbA: Ketopantoate re 38.3 44 0.00096 30.3 4.1 98 302-416 1-103 (151)
486 KOG2013 SMT3/SUMO-activating c 38.2 35 0.00075 38.8 3.9 73 296-384 9-84 (603)
487 PRK00414 gmhA phosphoheptose i 38.2 1.8E+02 0.0038 28.5 8.5 36 379-416 111-148 (192)
488 COG0562 Glf UDP-galactopyranos 38.2 36 0.00078 37.0 3.9 34 301-346 3-36 (374)
489 PRK10015 oxidoreductase; Provi 38.2 35 0.00076 37.3 4.0 33 300-344 6-38 (429)
490 PRK06126 hypothetical protein; 38.0 40 0.00087 37.6 4.5 23 298-320 6-28 (545)
491 COG0569 TrkA K+ transport syst 38.0 46 0.00099 33.4 4.5 98 301-417 2-104 (225)
492 PRK06183 mhpA 3-(3-hydroxyphen 38.0 37 0.0008 37.9 4.2 23 298-320 9-31 (538)
493 TIGR03589 PseB UDP-N-acetylglu 37.8 84 0.0018 32.6 6.5 106 297-414 2-125 (324)
494 CHL00076 chlB photochlorophyll 37.8 43 0.00094 37.8 4.7 80 294-387 300-382 (513)
495 cd03813 GT1_like_3 This family 37.8 1.7E+02 0.0037 32.1 9.3 36 371-411 364-399 (475)
496 PRK14723 flhF flagellar biosyn 37.6 1.5E+02 0.0032 35.7 9.1 163 273-448 191-393 (767)
497 cd05017 SIS_PGI_PMI_1 The memb 37.6 1.4E+02 0.0031 26.4 7.2 34 379-415 43-78 (119)
498 PRK12809 putative oxidoreducta 37.5 44 0.00096 38.5 4.8 35 298-344 309-343 (639)
499 TIGR00658 orni_carb_tr ornithi 37.5 2.4E+02 0.0052 29.8 9.9 113 257-387 107-224 (304)
500 PTZ00367 squalene epoxidase; P 37.4 80 0.0017 36.2 6.8 30 291-320 22-54 (567)
No 1
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=100.00 E-value=1.8e-202 Score=1590.72 Aligned_cols=526 Identities=65% Similarity=1.030 Sum_probs=512.7
Q ss_pred cCcccccccccccc-ccccccccccccCcCCccCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHH
Q 008629 32 GEDRATEDQLVTPW-TISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYV 110 (559)
Q Consensus 32 ~~~~~~~~~~~~~~-~~~~~~G~~~l~~p~~NKg~aFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~ 110 (559)
++...+..+...+| +.++.+|+++|+||++|||+|||.+||++|||||||||.|+|+|+|++||+.+|+++++||+||+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~~~l~ky~ 89 (582)
T KOG1257|consen 10 STAPLTLAHRITPRPVESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLTSPLAKYI 89 (582)
T ss_pred cCCCccccccccccccccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhccchHHHHH
Confidence 33333333333444 66678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhhhhhhhHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecC
Q 008629 111 AMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDG 190 (559)
Q Consensus 111 ~L~~L~~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG 190 (559)
||++||+|||+|||++|++|++|+||||||||||+|||+||+|||+|+|||||++|+|||.++|+|||.++|++||||||
T Consensus 90 ~L~~L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVTDG 169 (582)
T KOG1257|consen 90 YLMDLQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVTDG 169 (582)
T ss_pred HHHHHHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecccCCCCCccccchhHHHHHHhHhcCCCCCc--------------------------------chhHhHHHHHHHHH
Q 008629 191 ERILGLGDLGCQGMGIPVGKLALYTALGGIRPSA--------------------------------EYAELLDEFMSAVK 238 (559)
Q Consensus 191 ~rILGLGDlG~~GmgI~iGKl~LY~a~gGI~P~~--------------------------------~y~~~vdefv~av~ 238 (559)
||||||||||++|||||+|||+|||+||||+|++ +|++|+||||+||+
T Consensus 170 erILGLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~ 249 (582)
T KOG1257|consen 170 ERILGLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVV 249 (582)
T ss_pred CceecccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 99999999999999
Q ss_pred HhhCCCeeeeeccCCCCcHHHHHHHHcCCCCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHH
Q 008629 239 QNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELI 318 (559)
Q Consensus 239 ~~fGp~~lIq~EDf~~~~Af~lL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll 318 (559)
++|||++|||||||+++|||++|+|||.++|||||||||||+|+|||||+|+|++|++|+|++|||+|||+||+|||+||
T Consensus 250 ~~yG~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~l~ 329 (582)
T KOG1257|consen 250 QRYGPNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIANLI 329 (582)
T ss_pred HHhCcceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHH
Q 008629 319 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVI 398 (559)
Q Consensus 319 ~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv 398 (559)
+.+|+++ |+|+|||+++|||+|++|||+++|+.+++++|++||++++++++|+|||+.||||||||+|++||+||||||
T Consensus 330 v~~m~~~-Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Fteevl 408 (582)
T KOG1257|consen 330 VMAMVKE-GLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTVLIGASGVGGAFTEEVL 408 (582)
T ss_pred HHHHHHc-CCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHHHhcCCcEEEecccCCccCCHHHH
Confidence 9999996 999999999999999999999999878999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcc
Q 008629 399 EAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIR 478 (559)
Q Consensus 399 ~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~ 478 (559)
|+|+++|||||||||||||+++||||||||+||+||||||||||||||+||||+|+||||||+|+|||||||+++|++++
T Consensus 409 ~~Ma~~~erPiIFalSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~NN~yiFPGi~Lg~vlsg~~~ 488 (582)
T KOG1257|consen 409 RAMAKSNERPIIFALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQGNNAYIFPGIGLGVVLSGARR 488 (582)
T ss_pred HHHHhcCCCceEEecCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeCCcEecccCCceeEecchHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhccCccccCCCcccCCCCCccchHHHHHHHHHHHHHHhCCCCCCCCchhHHHHHHhCCcccCCCCC
Q 008629 479 VHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNY 558 (559)
Q Consensus 479 Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GvA~~~~~~~d~~~~i~~~m~~P~Y~~~ 558 (559)
|+|+||++||++||++++++++++|.||||+++||+||.+||++|+++|+++|+|+..|+|+|+.+|++++||+|+|+++
T Consensus 489 i~D~mfl~Aae~LA~~v~~e~~~~g~lyPpl~~ir~iS~~Ia~aV~~~a~~~glA~~~p~P~d~~~~~~~~~y~~~Y~~~ 568 (582)
T KOG1257|consen 489 IPDEMFLAAAEALAEQVSEEELEKGRLYPPLSNIREISANIAAAVLKYAYEEGLATRYPEPKDKEKFIEESMYNPEYRNS 568 (582)
T ss_pred CCHHHHHHHHHHHHhhCCHhHhhcCCcCCChhHHHHHHHHHHHHHHHHHHhcCccccCCCcccHHHHHHhccCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=1.7e-193 Score=1558.17 Aligned_cols=511 Identities=76% Similarity=1.194 Sum_probs=502.8
Q ss_pred cccccccccCcCCccCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHHHHhHhhhhhhhHHHhh
Q 008629 49 VASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLI 128 (559)
Q Consensus 49 ~~~G~~~l~~p~~NKg~aFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ll~ 128 (559)
..+|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||+|||+|||++++
T Consensus 39 ~~~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll~ 118 (581)
T PLN03129 39 VASGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALESPLAKYRALMDLQERNERLFYRVLI 118 (581)
T ss_pred CCcchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhCcccchhhhh
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCCCccccchh
Q 008629 129 DNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPV 208 (559)
Q Consensus 129 ~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~i 208 (559)
+|++|+||||||||||+||++||++||+|||||||++|+|+|+++|+|||.++|++||||||||||||||||++||||||
T Consensus 119 ~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~Gm~I~~ 198 (581)
T PLN03129 119 DNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLGDLGVQGMGIPV 198 (581)
T ss_pred cCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhcCCCcCceEEEEecCcceeeccccCCCccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhcCCCCCc--------------------------------chhHhHHHHHHHHHHhhCCCeeeeeccCCCCc
Q 008629 209 GKLALYTALGGIRPSA--------------------------------EYAELLDEFMSAVKQNYGEKVLIQFEDFANHN 256 (559)
Q Consensus 209 GKl~LY~a~gGI~P~~--------------------------------~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~ 256 (559)
||++|||+||||||.+ +|++|+||||++|+.+|||+++||||||+++|
T Consensus 199 GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~ 278 (581)
T PLN03129 199 GKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN 278 (581)
T ss_pred hHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc
Confidence 9999999999999987 89999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhccc
Q 008629 257 AFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 336 (559)
Q Consensus 257 Af~lL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~ 336 (559)
||+||+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|+++.|+|+|||+++
T Consensus 279 af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~ 358 (581)
T PLN03129 279 AFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKR 358 (581)
T ss_pred HHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987569999999999
Q ss_pred EEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 008629 337 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 416 (559)
Q Consensus 337 i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 416 (559)
||++|++|||+++|.++|+++|++||++.++..+|+|+|+.+|||||||+|+++|+|||||||+|+++|+||||||||||
T Consensus 359 i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNP 438 (581)
T PLN03129 359 IWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNP 438 (581)
T ss_pred EEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 99999999999999766999999999987777899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccC
Q 008629 417 TSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVT 496 (559)
Q Consensus 417 t~~~EctpedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~ 496 (559)
|++|||||||||+||+|+|||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++||++||++++
T Consensus 439 t~~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~Itd~m~~aAA~aLA~~v~ 518 (581)
T PLN03129 439 TSKAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTFHPGQANNAYIFPGIGLGALLSGAIRVTDDMLLAAAEALAAQVT 518 (581)
T ss_pred CCCcCcCHHHHHHhhcCCEEEEeCCCCCCeeeCCeeecCccccceeeccchhhHHHhcCCcCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccCCCCCccchHHHHHHHHHHHHHHhCCCCCCCCchhHHHHHHhCCcccCCCCCC
Q 008629 497 EENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559 (559)
Q Consensus 497 ~~~~~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GvA~~~~~~~d~~~~i~~~m~~P~Y~~~~ 559 (559)
++++..+.|||++++||+||.+||+||+++|+++|+|+..++|+++.+||+++||+|+|+|++
T Consensus 519 ~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~G~A~~~~~~~~~~~~i~~~mw~P~Y~~~~ 581 (581)
T PLN03129 519 EEELAKGAIYPPFSRIRDISAHVAAAVAAKAYEEGLATRLPRPEDLVEYAESCMYSPVYRPYR 581 (581)
T ss_pred cccCCCCeecCCCcchhHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHcCcCCCCCCCC
Confidence 999999999999999999999999999999999999987777899999999999999999975
No 3
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=1e-193 Score=1555.63 Aligned_cols=509 Identities=49% Similarity=0.838 Sum_probs=498.1
Q ss_pred cccccccccccCcCCccCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHHHHhHhhhhhhhHHH
Q 008629 47 ISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKL 126 (559)
Q Consensus 47 ~~~~~G~~~l~~p~~NKg~aFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~l 126 (559)
.+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||+|||+||||+
T Consensus 12 ~~~~~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~l 91 (563)
T PRK13529 12 YTPLRGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKPTDLEKHIYLRNLQDRNETLFYRL 91 (563)
T ss_pred eecccchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCchhhHHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCCCccccc
Q 008629 127 LIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGI 206 (559)
Q Consensus 127 l~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI 206 (559)
|++|++|+||||||||||+|||+||++||+|||||||++|+|+|.++|+|||.++|++||||||||||||||||++||||
T Consensus 92 l~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I 171 (563)
T PRK13529 92 LSDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGERILGIGDQGIGGMGI 171 (563)
T ss_pred HHhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCCceeeeccccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhHhcCCCCCc--------------------------------chhHhHHHHHHHHHHhhCCCeeeeeccCCC
Q 008629 207 PVGKLALYTALGGIRPSA--------------------------------EYAELLDEFMSAVKQNYGEKVLIQFEDFAN 254 (559)
Q Consensus 207 ~iGKl~LY~a~gGI~P~~--------------------------------~y~~~vdefv~av~~~fGp~~lIq~EDf~~ 254 (559)
||||++|||+||||||.+ +|++|+||||++|+.+| |+++||||||++
T Consensus 172 ~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~ 250 (563)
T PRK13529 172 PIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQ 250 (563)
T ss_pred cccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCC
Confidence 999999999999999987 89999999999999999 999999999999
Q ss_pred CcHHHHHHHHcCCCCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc
Q 008629 255 HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 334 (559)
Q Consensus 255 ~~Af~lL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~ 334 (559)
+|||+||+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||+
T Consensus 251 ~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~-~Gl~~eeA~ 329 (563)
T PRK13529 251 KNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVR-EGLSEEEAR 329 (563)
T ss_pred chHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997 599999999
Q ss_pred ccEEEEcccCccccCCcCCCchhchhhccccCCC---------CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC
Q 008629 335 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV---------NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN 405 (559)
Q Consensus 335 ~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~---------~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~ 405 (559)
++||++|++|||+++|.+ |+++|++|||+.++. .+|+|+|+.+|||||||+|+++|+|||||||+|+++|
T Consensus 330 ~~i~~vD~~GLl~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~ 408 (563)
T PRK13529 330 KRFFMVDRQGLLTDDMPD-LLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHC 408 (563)
T ss_pred CeEEEEcCCCeEeCCCCc-chHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcC
Confidence 999999999999999965 999999999975542 5899999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHH
Q 008629 406 EKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLL 485 (559)
Q Consensus 406 erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~ 485 (559)
||||||||||||++|||||||||+||+|||||||||||+||+|+|++++||||||+|||||||||+++++|++|||+||+
T Consensus 409 erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~ 488 (563)
T PRK13529 409 ERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLM 488 (563)
T ss_pred CCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCccccCCCcccCCCCCccchHHHHHHHHHHHHHHhCCCCCCCCchhHHHHHHhCCcccCCCCCC
Q 008629 486 AASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559 (559)
Q Consensus 486 aAA~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GvA~~~~~~~d~~~~i~~~m~~P~Y~~~~ 559 (559)
+||++||+++++++++++.|||++++||+||.+||.||+++|+++|+|+. ++|+|+.+||+++||+|+|+|++
T Consensus 489 aAA~alA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~-~~~~~~~~~i~~~~w~P~Y~~~~ 561 (563)
T PRK13529 489 AAAHALADCVPLAKPGEGALLPPVEDIREVSRAIAIAVAKAAIEEGLARE-TSDEDLEQAIEDNMWQPEYRPYR 561 (563)
T ss_pred HHHHHHHhhCccccCCCCeeECCCcchhhhHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHhcCcCCCCcccc
Confidence 99999999999999999999999999999999999999999999999984 67899999999999999999974
No 4
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=3.3e-191 Score=1535.04 Aligned_cols=508 Identities=49% Similarity=0.827 Sum_probs=494.5
Q ss_pred cccccccccccccCcCCccCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHHHHhHhhhhhhhH
Q 008629 45 WTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFY 124 (559)
Q Consensus 45 ~~~~~~~G~~~l~~p~~NKg~aFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy 124 (559)
...+..+|.++|+||++|||||||.+||++|||||||||+|+|+|+|++|||.||+++++||+||+||++||+|||+|||
T Consensus 12 ~~~~~~~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy 91 (559)
T PTZ00317 12 KVPSNARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIETPINKYQFLRNIHDTNETLFY 91 (559)
T ss_pred ccccCCcchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCCChHHHHHHHHHHhhcCchHHH
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCCCccc
Q 008629 125 KLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGM 204 (559)
Q Consensus 125 ~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm 204 (559)
++|++|++||||||||||||+||++||++||+|||||+|++|+|+|+++|+|||.++|++||||||||||||||||++||
T Consensus 92 ~ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG~rILGLGDlG~~Gm 171 (559)
T PTZ00317 92 ALLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGSRILGLGDLGANGM 171 (559)
T ss_pred HHHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEeccccccccCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHhHhcCCCCCc--------------------------------chhHhHHHHHHHHHHhhCCCeeeeeccC
Q 008629 205 GIPVGKLALYTALGGIRPSA--------------------------------EYAELLDEFMSAVKQNYGEKVLIQFEDF 252 (559)
Q Consensus 205 gI~iGKl~LY~a~gGI~P~~--------------------------------~y~~~vdefv~av~~~fGp~~lIq~EDf 252 (559)
|||+||++|||+||||||.+ +|++|+||||+||+++| |+++||||||
T Consensus 172 ~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~Iq~EDf 250 (559)
T PTZ00317 172 GISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFEDF 250 (559)
T ss_pred cccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhC-CCeEEehhhc
Confidence 99999999999999999988 89999999999999999 9999999999
Q ss_pred CCCcHHHHHHHHcCCCCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhh
Q 008629 253 ANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE 332 (559)
Q Consensus 253 ~~~~Af~lL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~ee 332 (559)
+++|||++|+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+||
T Consensus 251 ~~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~-~Gls~ee 329 (559)
T PTZ00317 251 SNNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAE-YGVTREE 329 (559)
T ss_pred CCccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987 5999999
Q ss_pred hcccEEEEcccCccccCCcCCCchhchhhcccc--CC---CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCC
Q 008629 333 TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EP---VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEK 407 (559)
Q Consensus 333 A~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~--~~---~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~er 407 (559)
|++|||++|++|||+++|.++|+++|++||++. ++ ..+|+|||+.+|||||||+|+++|+|||||||+|+++|+|
T Consensus 330 A~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~r 409 (559)
T PTZ00317 330 ALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVER 409 (559)
T ss_pred hcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCC
Confidence 999999999999999999766999999999974 33 5699999999999999999999999999999999999999
Q ss_pred cEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHH
Q 008629 408 PLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAA 487 (559)
Q Consensus 408 PIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aA 487 (559)
||||||||||++|||||||||+||+|||||||||||+||+||||+++||||||+|||||||||+++++|++|||+||++|
T Consensus 410 PIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~m~~aA 489 (559)
T PTZ00317 410 PIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTLNGKTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAA 489 (559)
T ss_pred CEEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCcccCCeeeccCcCcceeeccchhhhhHhhcccCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCccccCCCcccCCCCCccchHHHHHHHHHHHHHHhCCCCC--CCC-chhHHHHHHhCCcccC
Q 008629 488 SEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATR--LPR-PQNLVKCAESCMYTPV 554 (559)
Q Consensus 488 A~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GvA~~--~~~-~~d~~~~i~~~m~~P~ 554 (559)
|++||+++++++++.+.|||++++||+||.+||+||+++|+++|+|+. .|+ ++|+.+||+++||+|.
T Consensus 490 A~aLA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aV~~~A~~~G~A~~~~~~~~~~~~~~~i~~~~w~P~ 559 (559)
T PTZ00317 490 AASLATLVSEEDLREGKLYPPLEDIREISAHIAVDVIEEAQEMGIAKNKDLPDNRDELLALVKDRMWVPK 559 (559)
T ss_pred HHHHHhhCCccccCCCeeeCCCccHhHHHHHHHHHHHHHHHHhCCCccCCCCCCHHHHHHHHHhcCcCCC
Confidence 999999999999999999999999999999999999999999999985 344 3689999999999995
No 5
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=1.1e-115 Score=915.90 Aligned_cols=420 Identities=36% Similarity=0.522 Sum_probs=375.5
Q ss_pred cccHHHHHHHHHHHHhcCCC-chhHHHHHHHhHhhhhhhhHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCccccc
Q 008629 85 VISQQLQEKKLMNSIRQYEV-PLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYIS 163 (559)
Q Consensus 85 v~t~e~Q~~r~~~~~~~~~~-~l~Ky~~L~~L~~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyis 163 (559)
++|+| |.+|++.++..+.+ +|++|.|+ ++|+.+||.++-.|..|+|||+||||||++|++||+.|++++
T Consensus 1 v~t~~-q~~~~~~~~~~~~~~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~----- 70 (432)
T COG0281 1 VETIE-QAERAYEQYEQLKTEALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAY----- 70 (432)
T ss_pred CccHH-HHHHHHHHHhhhhhhhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCcchhh-----
Confidence 57899 99999999999888 99999999 899999999999999999999999999999999998888874
Q ss_pred ccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCC-CccccchhHHHHHHhHhcCCCCCc-----chhHhHHHHHHHH
Q 008629 164 LKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLG-CQGMGIPVGKLALYTALGGIRPSA-----EYAELLDEFMSAV 237 (559)
Q Consensus 164 ~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG-~~GmgI~iGKl~LY~a~gGI~P~~-----~y~~~vdefv~av 237 (559)
.++.++++|||||||||||||||+| ..||||||||++|||+|||||..+ ...+-+++||+++
T Consensus 71 ------------~yt~~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid~~pI~ld~~~~~ei~~~Vkal 138 (432)
T COG0281 71 ------------SYTARGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGIDVLPIELDVGTNNEIIEFVKAL 138 (432)
T ss_pred ------------hcCCCCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCCceeeEeeCCChHHHHHHHHHh
Confidence 2667777999999999999999999 578999999999999999999988 3333488999999
Q ss_pred HHhhCCCeeeeeccCCCCcHHHHHH--HHcCCCCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHH
Q 008629 238 KQNYGEKVLIQFEDFANHNAFELLA--KYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIA 315 (559)
Q Consensus 238 ~~~fGp~~lIq~EDf~~~~Af~lL~--ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia 315 (559)
.++||. |++||++.|+||.+++ ||+.+||||||||||||+|+||||+||+|++|++|+|+||||+|||+||+||+
T Consensus 139 ~p~Fgg---inLedi~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia 215 (432)
T COG0281 139 EPTFGG---INLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIA 215 (432)
T ss_pred hhcCCC---cceeecccchhhHHHHHHhhcCCCCcccccccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHH
Confidence 999966 6666666677766555 55679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcC-CCchhchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCC
Q 008629 316 ELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD-SLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTF 393 (559)
Q Consensus 316 ~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~-~l~~~k~~fA~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~F 393 (559)
+||+.++++ +++||+||++|+|+++|.+ .++++|..+|. +.....+ .+++ .+||||||+|++ |+|
T Consensus 216 ~~l~~~g~~---------~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~--~~adv~iG~S~~-G~~ 282 (432)
T COG0281 216 DLLVAAGVK---------EENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLAL--AGADVLIGVSGV-GAF 282 (432)
T ss_pred HHHHHhCCC---------cccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccc--cCCCEEEEcCCC-CCc
Confidence 999997443 2899999999999999975 36778877875 4444442 4444 479999999998 899
Q ss_pred CHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHH
Q 008629 394 TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVI 473 (559)
Q Consensus 394 t~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~ 473 (559)
|+|+||+|+ ++|||||||||| +|++||||.+|++|++|+|||| +++|||+||+|+|||||+|+|+
T Consensus 283 t~e~V~~Ma---~~PiIfalaNP~--pEi~Pe~a~~~~~~aaivaTGr----------sd~PnQvNNvL~FPgIfrGaLd 347 (432)
T COG0281 283 TEEMVKEMA---KHPIIFALANPT--PEITPEDAKEWGDGAAIVATGR----------SDYPNQVNNVLIFPGIFRGALD 347 (432)
T ss_pred CHHHHHHhc---cCCEEeecCCCC--ccCCHHHHhhcCCCCEEEEeCC----------CCCcccccceeEcchhhhhhHh
Confidence 999999999 559999999999 9999999999999999999996 5666699999999999999999
Q ss_pred hCCcccCHHHHHHHHHHHHhccCccccCCCcccCCCCCccchHHHHHHHHHHHHHHhCCCCCCCCc-hhHHHHHHhCCcc
Q 008629 474 SGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRP-QNLVKCAESCMYT 552 (559)
Q Consensus 474 ~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GvA~~~~~~-~d~~~~i~~~m~~ 552 (559)
+||++|||+|++|||+|||+++.++.+ .+.|+|++++.|.+|. ||.||+++|.++|+|+..+.+ +++.++++..+|.
T Consensus 348 ~rA~~ItdeM~~AAa~AiA~~~~~~~~-~~~iiP~~~d~r~~~~-vA~AVa~aA~~~GvA~~~~~~~~~~~~~~~~~~~~ 425 (432)
T COG0281 348 VRAKTITDEMKIAAAEAIADLAREEVL-EEYIIPPPFDPRVISR-VAVAVAKAAMEEGVARRPIDDEEAYEQALEARLWK 425 (432)
T ss_pred hccccCCHHHHHHHHHHHHhhccccCC-cCCCCCCCCchhHHHH-HHHHHHHHHHHcCCccCCCCCHHHHHHHHHHHhcC
Confidence 999999999999999999999987655 7899999999999998 999999999999999965544 4699999999999
Q ss_pred cCCCCCC
Q 008629 553 PVYRNYR 559 (559)
Q Consensus 553 P~Y~~~~ 559 (559)
|.|.+++
T Consensus 426 ~~~~~~~ 432 (432)
T COG0281 426 PEYRMKR 432 (432)
T ss_pred cccccCC
Confidence 9998763
No 6
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=3.8e-109 Score=926.23 Aligned_cols=364 Identities=31% Similarity=0.477 Sum_probs=333.7
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCCCcc-ccchhHH
Q 008629 132 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG-MGIPVGK 210 (559)
Q Consensus 132 ~e~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~iGK 210 (559)
.+.|.++|||||+++|++ |+++|+++|- |+.+.+.|+|||||||||||||+|++| |||||||
T Consensus 34 ~~dl~l~YtPgVa~~c~~---i~~~p~~~~~--------------~t~r~n~v~VvtdG~~vLGLGdiG~~a~~pvmeGK 96 (764)
T PRK12861 34 QRDLALAYTPGVASACEE---IAADPLNAFR--------------FTSRGNLVGVITNGTAVLGLGNIGALASKPVMEGK 96 (764)
T ss_pred hHHceeecCCchHHHHHH---HHhChHhhhh--------------hhccCcEEEEEecchhhccCCCcCcccccchHHHH
Confidence 466999999999999999 8999999863 566667799999999999999999997 9999999
Q ss_pred HHHHhHhcCCCCCc------chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHHHHHHHHcC--CCCeeecCCcchhHHH
Q 008629 211 LALYTALGGIRPSA------EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGT--THLVFNDDIQGTASVV 282 (559)
Q Consensus 211 l~LY~a~gGI~P~~------~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af~lL~ryr~--~~~~FnDDiQGTaaV~ 282 (559)
++|||+|||||..+ .-++|+ |||++++++||. ||||||++||||+||+|||+ +||||||||||||+|+
T Consensus 97 ~~L~~~~agid~~di~~~~~dpd~~v-~~v~a~~~~fg~---i~lED~~~p~~f~il~~~~~~~~ipvf~DD~qGTa~v~ 172 (764)
T PRK12861 97 AVLFKKFAGIDVFDIEINETDPDKLV-DIIAGLEPTFGG---INLEDIKAPECFTVERKLRERMKIPVFHDDQHGTAITV 172 (764)
T ss_pred HHHHhhccCCCccccccCCCCHHHHH-HHHHHHHhhcCC---ceeeeccCchHHHHHHHHHhcCCCCeeccccchHHHHH
Confidence 99999999999887 567888 999999999977 99999999999999999998 6999999999999999
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhc
Q 008629 283 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 362 (559)
Q Consensus 283 LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA 362 (559)
||||+||+|++|++|+||||||+|||+||+|||++|+. .|+++| +||++|++|||+++|.+.|+++|++||
T Consensus 173 lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~-----~G~~~~----~i~~~D~~Gli~~~r~~~l~~~k~~~a 243 (764)
T PRK12861 173 SAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVD-----LGLPVE----NIWVTDIEGVVYRGRTTLMDPDKERFA 243 (764)
T ss_pred HHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHH-----cCCChh----hEEEEcCCCeeeCCCcccCCHHHHHHH
Confidence 99999999999999999999999999999999999976 499854 999999999999999766999999999
Q ss_pred cccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCC
Q 008629 363 HEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP 442 (559)
Q Consensus 363 ~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSP 442 (559)
++. +..+|+|+|+. ||||||+|+ +|+||+|+|++|+ +||||||||||| |||+||||++ |+|+||||||
T Consensus 244 ~~~-~~~~L~eai~~--advliG~S~-~g~ft~e~v~~Ma---~~PIIFaLsNPt--pE~~pe~a~~-~~g~aivaTG-- 311 (764)
T PRK12861 244 QET-DARTLAEVIGG--ADVFLGLSA-GGVLKAEMLKAMA---ARPLILALANPT--PEIFPELAHA-TRDDVVIATG-- 311 (764)
T ss_pred hhc-CCCCHHHHHhc--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEECCCCC--ccCCHHHHHh-cCCCEEEEeC--
Confidence 985 45799999997 899999998 8999999999998 599999999999 8999999987 9999999997
Q ss_pred CCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccCccccC------------CCc--ccCC
Q 008629 443 FDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFE------------KGL--IYPP 508 (559)
Q Consensus 443 F~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~------------~~~--l~P~ 508 (559)
|+++|||+||+|+|||||||+++++|++|||+|+++||++||++++++++. .+. |+|+
T Consensus 312 --------rs~~pnQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~alA~~~~~~~~~~~~~~~~~~~~~~~~~~iiP~ 383 (764)
T PRK12861 312 --------RSDYPNQVNNVLCFPYIFRGALDVGATTITREMEIAAVHAIAGLAEEEQNDVVAAAYGAYDVSFGPQYLIPK 383 (764)
T ss_pred --------CcCCCCccceeeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhCCcccCHHHHHhhccccccCCCCCCCCC
Confidence 899999999999999999999999999999999999999999999987533 444 4495
Q ss_pred CCCccchHHHHHHHHHHHHHHhCCCCCCCCchhHHHHHHh
Q 008629 509 FSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAES 548 (559)
Q Consensus 509 ~~~ir~vs~~VA~aVa~~A~~~GvA~~~~~~~d~~~~i~~ 548 (559)
..+ ++||.+||.||+++|+++|+|+. +. +|+.+|+++
T Consensus 384 ~~~-~~v~~~VA~aVa~~a~~~GvA~~-~~-~~~~~~~~~ 420 (764)
T PRK12861 384 PFD-PRLIVRIAPAVAKAAMEGGVATR-PI-ADLDAYVEQ 420 (764)
T ss_pred CCC-hhHHHHHHHHHHHHHHHhCCCCC-Cc-hhHHHHHHH
Confidence 555 78999999999999999999985 32 567776654
No 7
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=8.9e-109 Score=927.91 Aligned_cols=367 Identities=29% Similarity=0.430 Sum_probs=339.4
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCCCcc-ccchhHH
Q 008629 132 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG-MGIPVGK 210 (559)
Q Consensus 132 ~e~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~iGK 210 (559)
.+.|.++|||||+++|++ |+++|+++|- |+.+.+.|+|||||||||||||+|++| |||||||
T Consensus 38 ~~dl~~~ytpgv~~~~~~---i~~~~~~~~~--------------~t~~~n~v~vvtdg~~vLGlGd~G~~~~~pv~egK 100 (763)
T PRK12862 38 QRDLALAYSPGVAAPCLE---IAADPANAAR--------------YTSRGNLVAVVSNGTAVLGLGNIGPLASKPVMEGK 100 (763)
T ss_pred HHHceeeeCCchHHHHHH---HHhChHhhhh--------------cccCCcEEEEEechhhhccccccCcccccchHHHH
Confidence 456999999999999999 7899988883 777888999999999999999999997 9999999
Q ss_pred HHHHhHhcCCCCCc--chhHhHHHHHHHHHHhhCCC-eeeeeccCCCCcHHHHHHHHcCC--CCeeecCCcchhHHHHHH
Q 008629 211 LALYTALGGIRPSA--EYAELLDEFMSAVKQNYGEK-VLIQFEDFANHNAFELLAKYGTT--HLVFNDDIQGTASVVLAG 285 (559)
Q Consensus 211 l~LY~a~gGI~P~~--~y~~~vdefv~av~~~fGp~-~lIq~EDf~~~~Af~lL~ryr~~--~~~FnDDiQGTaaV~LAg 285 (559)
++|||+|||||..+ ...+..||||++|+.+| |+ ..||||||++||||+||+|||++ ||||||||||||+|+|||
T Consensus 101 ~~l~~~~~gi~~~~i~~~~~d~d~~v~~v~~~~-p~f~~i~~ED~~~~~~f~i~~~~~~~~~ip~f~DD~~GTa~v~la~ 179 (763)
T PRK12862 101 AVLFKKFAGIDVFDIELDESDPDKLVEIVAALE-PTFGGINLEDIKAPECFYIERELRERMKIPVFHDDQHGTAIIVAAA 179 (763)
T ss_pred HHHHHhhcCCCccccccCCCCHHHHHHHHHHhC-CCcceeeeecccCchHHHHHHHHHhcCCCceEecCcccHHHHHHHH
Confidence 99999999999777 33446899999999999 88 89999999999999999999986 899999999999999999
Q ss_pred HHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc
Q 008629 286 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH 365 (559)
Q Consensus 286 ll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~ 365 (559)
|+||+|++|++|+|+||||+|||+||+|||+||+. .|+++ +|||+||++|||+++|.+.|+++|++||++.
T Consensus 180 l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~~----~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~ 250 (763)
T PRK12862 180 LLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVS-----LGVKR----ENIWVTDIKGVVYEGRTELMDPWKARYAQKT 250 (763)
T ss_pred HHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHH-----cCCCc----ccEEEEcCCCeeeCCCCccccHHHHHHhhhc
Confidence 99999999999999999999999999999999987 39874 7999999999999999766999999999985
Q ss_pred CCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCC
Q 008629 366 EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDP 445 (559)
Q Consensus 366 ~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~p 445 (559)
+..+|+|+|+. ||||||+|+ +|+||+|+|++|+ +||||||||||| |||+|||||+||+| ||||||
T Consensus 251 -~~~~l~e~~~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsNP~--~E~~p~~a~~~~~~-~i~atG----- 315 (763)
T PRK12862 251 -DARTLAEVIEG--ADVFLGLSA-AGVLKPEMVKKMA---PRPLIFALANPT--PEILPEEARAVRPD-AIIATG----- 315 (763)
T ss_pred -ccCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEeCCCCc--ccCCHHHHHHhcCC-EEEEEC-----
Confidence 45799999998 999999999 8999999999998 999999999999 89999999999999 999998
Q ss_pred ceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccCccc--------------cCCCcccCCCCC
Q 008629 446 FEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEEN--------------FEKGLIYPPFSN 511 (559)
Q Consensus 446 v~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~--------------~~~~~l~P~~~~ 511 (559)
|+++|||+||+|+|||||||+++++|++|||+|+++||++||+++++++ +...+|||+..+
T Consensus 316 -----rs~~p~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~~~~~~~~~~~~~~~~~~~~~~~~i~P~~~~ 390 (763)
T PRK12862 316 -----RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAIAELAREEQSDVVAAAYGGEDLSFGPDYLIPKPFD 390 (763)
T ss_pred -----CcCCCCcccceeeccchhhhHHhcCCeeCCHHHHHHHHHHHHhcccccCCHHHHHhhccccccCCCCcccCCCCC
Confidence 8999999999999999999999999999999999999999999999873 445569996666
Q ss_pred ccchHHHHHHHHHHHHHHhCCCCCCCCchhHHHHHHh
Q 008629 512 IRKISANIAANVAAKAYELGVATRLPRPQNLVKCAES 548 (559)
Q Consensus 512 ir~vs~~VA~aVa~~A~~~GvA~~~~~~~d~~~~i~~ 548 (559)
++||..||.||+++|+++|+|+. + .+|+.+|+++
T Consensus 391 -~~v~~~va~aVa~~a~~~g~a~~-~-~~~~~~~~~~ 424 (763)
T PRK12862 391 -PRLILKIAPAVAQAAMDSGVATR-P-IEDMDAYREQ 424 (763)
T ss_pred -hhHHHHHHHHHHHHHHHhCCCCC-C-chhHHHHHHH
Confidence 88999999999999999999985 3 3467777664
No 8
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=9.8e-108 Score=915.41 Aligned_cols=366 Identities=31% Similarity=0.473 Sum_probs=337.5
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCCCc-cccchhHH
Q 008629 132 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQ-GMGIPVGK 210 (559)
Q Consensus 132 ~e~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~-GmgI~iGK 210 (559)
.+.|+++||||||++|++ |+++|+++| ++.+|| +.|+|||||||||||||+|++ |||||+||
T Consensus 30 ~~dl~~~Ytpgv~~~c~~---i~~~~~~~~-~~t~~~-------------n~v~vvtdg~~vLGlGd~G~~a~~pv~egK 92 (752)
T PRK07232 30 QRDLSLAYSPGVAAPCLE---IAKDPADAY-KYTARG-------------NLVAVISNGTAVLGLGNIGALASKPVMEGK 92 (752)
T ss_pred hhhcceecCCchHHHHHH---HHhChhhcc-ccccCC-------------cEEEEEccchhhccccccccccCccHHHHH
Confidence 466999999999999996 889999999 555554 569999999999999999999 79999999
Q ss_pred HHHHhHhcCCCCCc--chhHhHHHHHHHHHHhhCCCe-eeeeccCCCCcHHHHHHHHcCC--CCeeecCCcchhHHHHHH
Q 008629 211 LALYTALGGIRPSA--EYAELLDEFMSAVKQNYGEKV-LIQFEDFANHNAFELLAKYGTT--HLVFNDDIQGTASVVLAG 285 (559)
Q Consensus 211 l~LY~a~gGI~P~~--~y~~~vdefv~av~~~fGp~~-lIq~EDf~~~~Af~lL~ryr~~--~~~FnDDiQGTaaV~LAg 285 (559)
++|||+|||||..+ ...+.+||||++|+..| |.. +||||||++||||+||+|||++ ||||||||||||+|+|||
T Consensus 93 ~~l~~~~~gid~~~i~~~~~d~de~v~~v~~~~-p~~g~i~~ED~~~p~~f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~ 171 (752)
T PRK07232 93 GVLFKKFAGIDVFDIEVDEEDPDKFIEAVAALE-PTFGGINLEDIKAPECFYIEEKLRERMDIPVFHDDQHGTAIISAAA 171 (752)
T ss_pred HHHHHhhcCCCccccccCCCCHHHHHHHHHHhC-CCccEEeeeecCCchHHHHHHHHHHhcCCCeeccccchHHHHHHHH
Confidence 99999999999988 33446999999999999 664 9999999999999999999985 899999999999999999
Q ss_pred HHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc
Q 008629 286 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH 365 (559)
Q Consensus 286 ll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~ 365 (559)
|+||+|++|++|+|+||||+|||+||+|||+||+. .|++ +++||++|++|||+++|.++|+++|++||++
T Consensus 172 l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~----~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~- 241 (752)
T PRK07232 172 LLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVA-----LGAK----KENIIVCDSKGVIYKGRTEGMDEWKAAYAVD- 241 (752)
T ss_pred HHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHH-----cCCC----cccEEEEcCCCeecCCCcccccHHHHHHhcc-
Confidence 99999999999999999999999999999999986 3987 6899999999999999966699999999998
Q ss_pred CCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCC
Q 008629 366 EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDP 445 (559)
Q Consensus 366 ~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~p 445 (559)
.+..+|+|+|+. ||||||+|+ +|+||+|+|++|+ +||||||||||| |||+||||++||+| +|||||
T Consensus 242 ~~~~~l~~~i~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsNP~--~E~~p~~a~~~~~~-~i~atG----- 307 (752)
T PRK07232 242 TDARTLAEAIEG--ADVFLGLSA-AGVLTPEMVKSMA---DNPIIFALANPD--PEITPEEAKAVRPD-AIIATG----- 307 (752)
T ss_pred CCCCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEecCCCC--ccCCHHHHHHhcCC-EEEEEC-----
Confidence 445799999998 999999999 8999999999998 799999999999 89999999999999 999998
Q ss_pred ceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccCcc--------------ccCCCcccCCCCC
Q 008629 446 FEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEE--------------NFEKGLIYPPFSN 511 (559)
Q Consensus 446 v~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~--------------~~~~~~l~P~~~~ 511 (559)
|+++|||+||+|+|||||+|+++++|++|||+|+++||++||++++++ ++...+|+|+.++
T Consensus 308 -----rs~~pnQ~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~~~~~~~~~~~~~~~~~~~~~~~~iip~~~~ 382 (752)
T PRK07232 308 -----RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKLAAVRAIAELAREEVSDEVAAAYGGQKLSFGPEYIIPKPFD 382 (752)
T ss_pred -----CcCCCCcccceeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhcccccchhhhhhhccccccCCCCccCCCCCC
Confidence 899999999999999999999999999999999999999999999886 6888999999888
Q ss_pred ccchHHHHHHHHHHHHHHhCCCCCCCCchhHHHHHH
Q 008629 512 IRKISANIAANVAAKAYELGVATRLPRPQNLVKCAE 547 (559)
Q Consensus 512 ir~vs~~VA~aVa~~A~~~GvA~~~~~~~d~~~~i~ 547 (559)
++|+..||.||+++|+++|+|+... +|+.+|.+
T Consensus 383 -~~~~~~va~av~~~a~~~g~a~~~~--~~~~~~~~ 415 (752)
T PRK07232 383 -PRLIVKIAPAVAKAAMDSGVATRPI--ADMDAYRE 415 (752)
T ss_pred -hhHHHHHHHHHHHHHHhhCcccCCC--CCHHHHHH
Confidence 6799999999999999999998532 24444443
No 9
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=6.4e-100 Score=770.03 Aligned_cols=277 Identities=60% Similarity=0.974 Sum_probs=270.2
Q ss_pred CcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCC
Q 008629 275 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 354 (559)
Q Consensus 275 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l 354 (559)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+|||+++||++|++|||+++|.+ |
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~-~G~~~eeA~~~i~~vD~~Gll~~~r~~-l 78 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVR-EGLSEEEARKKIWLVDSKGLLTKDRKD-L 78 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHH-cCCChhhccCeEEEEcCCCeEeCCCCc-c
Confidence 89999999999999999999999999999999999999999999999998 599999999999999999999999965 9
Q ss_pred chhchhhccccC--CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC
Q 008629 355 QHFKKPWAHEHE--PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK 432 (559)
Q Consensus 355 ~~~k~~fA~~~~--~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~ 432 (559)
+++|++||++.+ +..+|+|+|+++|||||||+|+++|+||+|+||+|+++|+|||||||||||+++||||||||+||+
T Consensus 79 ~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~ 158 (279)
T cd05312 79 TPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTD 158 (279)
T ss_pred hHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhc
Confidence 999999999766 568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccCccccCCCcccCCCCCc
Q 008629 433 GRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNI 512 (559)
Q Consensus 433 G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~i 512 (559)
|+|||||||||+||+||||+++||||||+|+|||||||+++++|++|||+||++||++||++++++++..+.|||+++++
T Consensus 159 G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~~l~~~~l~P~~~~~ 238 (279)
T cd05312 159 GRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEELARGRLYPPLSNI 238 (279)
T ss_pred CCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCccccCCCeeeCCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCCCchhHHHHHHhCCccc
Q 008629 513 RKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTP 553 (559)
Q Consensus 513 r~vs~~VA~aVa~~A~~~GvA~~~~~~~d~~~~i~~~m~~P 553 (559)
|+||..||.+|+++|+++|+|+..++|+|+++||+++||+|
T Consensus 239 r~vs~~VA~aVa~~A~~~gla~~~~~~~~~~~~i~~~~w~P 279 (279)
T cd05312 239 REISAQIAVAVAKYAYEEGLATRYPPPEDLEEYVKSQMWEP 279 (279)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhCccCC
Confidence 99999999999999999999987677789999999999998
No 10
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=1.6e-96 Score=737.17 Aligned_cols=252 Identities=54% Similarity=0.898 Sum_probs=229.7
Q ss_pred CcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCC
Q 008629 275 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 354 (559)
Q Consensus 275 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l 354 (559)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|+++ |+|++|||+||||+|++|||+++|. +|
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~-G~~~~eA~~~i~lvD~~Gll~~~r~-~l 78 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVRE-GLSEEEARKRIWLVDSKGLLTDDRE-DL 78 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCT-TS-HHHHHTTEEEEETTEEEBTTTS-SH
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHh-cCCHHHHhccEEEEeccceEeccCc-cC
Confidence 799999999999999999999999999999999999999999999999985 9999999999999999999999994 59
Q ss_pred chhchhhccccCCC---CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc
Q 008629 355 QHFKKPWAHEHEPV---NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 431 (559)
Q Consensus 355 ~~~k~~fA~~~~~~---~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt 431 (559)
+++|++|||+..+. .+|+|+|+++|||||||+|+++|+||||+||+|+++|||||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t 158 (255)
T PF03949_consen 79 NPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWT 158 (255)
T ss_dssp SHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTT
T ss_pred ChhhhhhhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhC
Confidence 99999999987665 499999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccCccccCCCcccCCCCC
Q 008629 432 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 511 (559)
Q Consensus 432 ~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 511 (559)
+|+|||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++||++||++++++++..+.|||++++
T Consensus 159 ~g~ai~AtGSpf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 238 (255)
T PF03949_consen 159 DGRAIFATGSPFPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAAAEALADLVSEEELAPGRLYPPLFD 238 (255)
T ss_dssp TSEEEEEESS----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHHHHHHHHTSSHHHHHTTBSS-SGGG
T ss_pred CceEEEecCCccCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHHHHHHHHhCCcccCCCCcccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHH
Q 008629 512 IRKISANIAANVAAKAY 528 (559)
Q Consensus 512 ir~vs~~VA~aVa~~A~ 528 (559)
+|+||.+||.+|+++||
T Consensus 239 ir~vs~~VA~aVa~~Ai 255 (255)
T PF03949_consen 239 IREVSARVAAAVAKQAI 255 (255)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhC
Confidence 99999999999999996
No 11
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=1.5e-93 Score=715.00 Aligned_cols=251 Identities=51% Similarity=0.775 Sum_probs=245.2
Q ss_pred CcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCC
Q 008629 275 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 354 (559)
Q Consensus 275 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l 354 (559)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+||||++||++|++|||+++|.+ |
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~-~Gls~e~A~~~i~~vD~~Gll~~~r~~-l 78 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVK-EGISKEEACKRIWXVDRKGLLVKNRKE-T 78 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHh-cCCCHHHHhccEEEECCCCeEeCCCCc-c
Confidence 79999999999999999999999999999999999999999999999997 599999999999999999999999965 8
Q ss_pred chhchh---hccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc
Q 008629 355 QHFKKP---WAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 431 (559)
Q Consensus 355 ~~~k~~---fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt 431 (559)
.++|++ |+++..+..+|+|+|+++|||||||+|+++|+||+|+||+|+++|+|||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t 158 (254)
T cd00762 79 CPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTAT 158 (254)
T ss_pred CHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhc
Confidence 999999 88887777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccCccccCCCcccCCCCC
Q 008629 432 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 511 (559)
Q Consensus 432 ~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 511 (559)
+|||||||||||+||+||||+|+|+||||+|||||||||+++++|++|||+||++||++||++++++++..+.|||++++
T Consensus 159 ~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~~~l~~~~i~P~~~~ 238 (254)
T cd00762 159 EGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEESLKPGRLYPPLFD 238 (254)
T ss_pred CCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCChhcCCCCceeCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHH
Q 008629 512 IRKISANIAANVAAKA 527 (559)
Q Consensus 512 ir~vs~~VA~aVa~~A 527 (559)
||+||.+||.+|+++|
T Consensus 239 ir~vs~~VA~aVa~~a 254 (254)
T cd00762 239 IQEVSLNIAVAVAKYA 254 (254)
T ss_pred hhhHHHHHHHHHHHhC
Confidence 9999999999999875
No 12
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=9.6e-64 Score=478.11 Aligned_cols=150 Identities=67% Similarity=1.217 Sum_probs=139.8
Q ss_pred HhhhhhhhHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecc
Q 008629 116 EERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILG 195 (559)
Q Consensus 116 ~~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILG 195 (559)
|++||+|||+++.+|++|+||||||||||+|||+||++|++|+|||+|++|+|+|+++|+|||.++|++|||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccchhHHHHHHhHhcCCCCCc--------------------------------chhHhHHHHHHHHHHhhCC
Q 008629 196 LGDLGCQGMGIPVGKLALYTALGGIRPSA--------------------------------EYAELLDEFMSAVKQNYGE 243 (559)
Q Consensus 196 LGDlG~~GmgI~iGKl~LY~a~gGI~P~~--------------------------------~y~~~vdefv~av~~~fGp 243 (559)
|||+|++|||||+||++|||+||||||.+ +|++|+||||+||+++|||
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999998 8999999999999999999
Q ss_pred CeeeeeccCCCCcHHHHHHHHc
Q 008629 244 KVLIQFEDFANHNAFELLAKYG 265 (559)
Q Consensus 244 ~~lIq~EDf~~~~Af~lL~ryr 265 (559)
+++||||||+++|||++|+|||
T Consensus 161 ~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 161 NALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp TSEEEE-S--CCHHHHHHHHHT
T ss_pred CeEEEEecCCChhHHHHHHhcC
Confidence 9999999999999999999997
No 13
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=100.00 E-value=1.4e-58 Score=456.43 Aligned_cols=223 Identities=38% Similarity=0.518 Sum_probs=207.7
Q ss_pred CcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCC
Q 008629 275 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 354 (559)
Q Consensus 275 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l 354 (559)
+||||+|++||+++|++..|.+++|+||||+|||+||.|||++|.. .|++ +++||++|++||++.+|.++|
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~-----~G~~----~~~i~ivdr~gl~~~~r~~~L 71 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLA-----AGAK----PENIVVVDSKGVIYEGREDDL 71 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHH-----cCcC----cceEEEEeCCCccccccchhh
Confidence 7999999999999999999999999999999999999999999975 3886 679999999999999997669
Q ss_pred chhchhhcccc--CCC-CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc
Q 008629 355 QHFKKPWAHEH--EPV-NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 431 (559)
Q Consensus 355 ~~~k~~fA~~~--~~~-~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt 431 (559)
.++|++|+++. .+. .+|.|+++. ||+|||+|+ +|.||+++++.|+ ++||||+||||+ +||++++|++|
T Consensus 72 ~~~~~~la~~~~~~~~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~---~~~ivf~lsnP~--~e~~~~~A~~~- 142 (226)
T cd05311 72 NPDKNEIAKETNPEKTGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA---KDPIVFALANPV--PEIWPEEAKEA- 142 (226)
T ss_pred hHHHHHHHHHhccCcccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC---CCCEEEEeCCCC--CcCCHHHHHHc-
Confidence 99999999764 222 378899985 999999999 8899999999997 899999999999 89999999999
Q ss_pred CCcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccCccccCCCcccCCCCC
Q 008629 432 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 511 (559)
Q Consensus 432 ~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 511 (559)
|..||+|| +++.|+||||+|||||||||++++++++|||+||++||++||++++++++..+.|||++++
T Consensus 143 -ga~i~a~G----------~~~~~~Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~~~~~~~~~~P~~~~ 211 (226)
T cd05311 143 -GADIVATG----------RSDFPNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEEVLGEEYIIPTPFD 211 (226)
T ss_pred -CCcEEEeC----------CCCCccccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCccccCCCcccCCCCc
Confidence 55599998 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHH
Q 008629 512 IRKISANIAANVAAKA 527 (559)
Q Consensus 512 ir~vs~~VA~aVa~~A 527 (559)
|+||..||.+|+++|
T Consensus 212 -~~~~~~va~~v~~~a 226 (226)
T cd05311 212 -PRVVPRVATAVAKAA 226 (226)
T ss_pred -hhHHHHHHHHHHHhC
Confidence 999999999999875
No 14
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.85 E-value=3.4e-08 Score=83.75 Aligned_cols=86 Identities=37% Similarity=0.492 Sum_probs=75.7
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
+||.++++++..+.+..+.+++..+++|+|+|.+|.+++..+.+. | .++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~-----~------~~~v~v~~r-------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADE-----G------GKKVVLCDR-------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHc-----C------CCEEEEEcC--------------
Confidence 689999999999999999999999999999999999999998763 3 257999888
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 008629 357 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 414 (559)
Q Consensus 357 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 414 (559)
|+||++++.++.|+++ .|+..++.|+||.++
T Consensus 56 ------------------------di~i~~~~~~~~~~~~---~~~~~~~~~~v~~~a 86 (86)
T cd05191 56 ------------------------DILVTATPAGVPVLEE---ATAKINEGAVVIDLA 86 (86)
T ss_pred ------------------------CEEEEcCCCCCCchHH---HHHhcCCCCEEEecC
Confidence 9999999999988888 455556999999875
No 15
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.39 E-value=0.012 Score=64.44 Aligned_cols=120 Identities=20% Similarity=0.274 Sum_probs=83.9
Q ss_pred CCCeee----------cCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhccc
Q 008629 267 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 336 (559)
Q Consensus 267 ~~~~Fn----------DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~ 336 (559)
.+|+|| |...||+--++-|+.. .++..+.+.+++|+|+|..|.++|..+... |. +
T Consensus 173 ~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~Gk~VlViG~G~IG~~vA~~lr~~-----Ga-------~ 237 (425)
T PRK05476 173 KFPAINVNDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAGKVVVVAGYGDVGKGCAQRLRGL-----GA-------R 237 (425)
T ss_pred CCCEEecCCcccCccccccHHHHhhhHHHHHH---hccCCCCCCEEEEECCCHHHHHHHHHHHhC-----CC-------E
Confidence 699998 6778888777666653 447778999999999999999999888652 63 5
Q ss_pred EEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 008629 337 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 416 (559)
Q Consensus 337 i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 416 (559)
++++|.+ ..|. +...+ ..-...++.++++. .|++|-+++..++|+.+.++.|. +.-|++-.+.+
T Consensus 238 ViV~d~d----p~ra--~~A~~-----~G~~v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK---~GailiNvG~~ 301 (425)
T PRK05476 238 VIVTEVD----PICA--LQAAM-----DGFRVMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMK---DGAILANIGHF 301 (425)
T ss_pred EEEEcCC----chhh--HHHHh-----cCCEecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCC---CCCEEEEcCCC
Confidence 8888864 1121 11111 11112368888874 89999988877788888888886 34466555554
Q ss_pred C
Q 008629 417 T 417 (559)
Q Consensus 417 t 417 (559)
.
T Consensus 302 d 302 (425)
T PRK05476 302 D 302 (425)
T ss_pred C
Confidence 4
No 16
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.20 E-value=0.0014 Score=71.01 Aligned_cols=121 Identities=25% Similarity=0.369 Sum_probs=82.0
Q ss_pred cchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 276 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 276 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
.+.-+|..+++--|.+..| .+.+.+++|+|+|..|..++..+.. .|+ .+++++|+.. +| ..
T Consensus 158 ~~~vSv~~~Av~la~~~~~-~l~~~~VlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~rs~----~r---a~ 218 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFG-SLKGKKALLIGAGEMGELVAKHLLR-----KGV------GKILIANRTY----ER---AE 218 (417)
T ss_pred CCCcCHHHHHHHHHHHHhC-CccCCEEEEECChHHHHHHHHHHHH-----CCC------CEEEEEeCCH----HH---HH
Confidence 5666777777766666655 4888999999999999999888864 364 5788887741 11 11
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCc-EEEecCCCC
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKP-LILALSNPT 417 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~erP-IIFaLSNPt 417 (559)
...+.+-...-...++.+++.. .|++|-+++.+ ..++++.++.+.....+| +|+-+++|.
T Consensus 219 ~la~~~g~~~i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Pr 280 (417)
T TIGR01035 219 DLAKELGGEAVKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPR 280 (417)
T ss_pred HHHHHcCCeEeeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 1111111111112367788875 89999987544 578999999875433356 888999997
No 17
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.19 E-value=0.013 Score=64.53 Aligned_cols=185 Identities=17% Similarity=0.156 Sum_probs=126.0
Q ss_pred chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHH--HHHHHHcCC---C-------Cee----ecCCcchhHHHHHHHHH
Q 008629 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF--ELLAKYGTT---H-------LVF----NDDIQGTASVVLAGVVA 288 (559)
Q Consensus 225 ~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af--~lL~ryr~~---~-------~~F----nDDiQGTaaV~LAgll~ 288 (559)
|-..|...|+.++.+.+||..=|-=+|++..-.- -+.+.|+.- . |+- .+--..||-=+..++..
T Consensus 142 Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~~~~~ 221 (445)
T PRK09414 142 EIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVYFAEE 221 (445)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHHHHHH
Confidence 6677889999999999999888888888743222 166787632 1 111 12334677777888888
Q ss_pred HHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEE-cccCccccCCcCCCchh-----ch---
Q 008629 289 ALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHF-----KK--- 359 (559)
Q Consensus 289 Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lv-D~~GLi~~~R~~~l~~~-----k~--- 359 (559)
+++..|.+|++.||+|.|-|..|...|++|.+ .|. +++-+ |++|-|+... .|+.. |.
T Consensus 222 ~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~-----~Ga-------kVVavsDs~G~iyn~~--GLD~~~L~~~k~~~~ 287 (445)
T PRK09414 222 MLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQ-----LGA-------KVVTCSDSSGYVYDEE--GIDLEKLKEIKEVRR 287 (445)
T ss_pred HHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCceEECCC--CCCHHHHHHHHHhcC
Confidence 88988999999999999999999999999964 364 45544 9999999875 34322 21
Q ss_pred ----hhccc-cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 008629 360 ----PWAHE-HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 429 (559)
Q Consensus 360 ----~fA~~-~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~EctpedA~~ 429 (559)
.|... ....-+-. .+-.++.||||=+.. ++..|++-...+-. +.-.||.=-+| |+ -+| +++++.
T Consensus 288 ~~l~~~~~~~~~~~i~~~-~i~~~d~DVliPaAl-~n~It~~~a~~i~~-~~akiIvEgAN~p~-t~~--A~~~L~ 357 (445)
T PRK09414 288 GRISEYAEEFGAEYLEGG-SPWSVPCDIALPCAT-QNELDEEDAKTLIA-NGVKAVAEGANMPS-TPE--AIEVFL 357 (445)
T ss_pred CchhhhhhhcCCeecCCc-cccccCCcEEEecCC-cCcCCHHHHHHHHH-cCCeEEEcCCCCCC-CHH--HHHHHH
Confidence 12110 00011222 234567999997665 77999999998843 35679999998 76 244 445554
No 18
>PRK14031 glutamate dehydrogenase; Provisional
Probab=97.07 E-value=0.028 Score=62.01 Aligned_cols=122 Identities=19% Similarity=0.157 Sum_probs=92.3
Q ss_pred chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHH--HHHHHHcCC---C-Cee----------ecCCcchhHHHHHHHHH
Q 008629 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF--ELLAKYGTT---H-LVF----------NDDIQGTASVVLAGVVA 288 (559)
Q Consensus 225 ~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af--~lL~ryr~~---~-~~F----------nDDiQGTaaV~LAgll~ 288 (559)
|-..+.-.||..+.+.+||+.-|--+|++..-.- -+.+.|+.. . -+| .+--.-||-=+.-++-.
T Consensus 138 Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~~~~~ 217 (444)
T PRK14031 138 EVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIYFLME 217 (444)
T ss_pred HHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHHHHHH
Confidence 6777889999999999999998888888763322 267777531 1 233 23335677777888888
Q ss_pred HHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhch
Q 008629 289 ALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK 359 (559)
Q Consensus 289 Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~ 359 (559)
+++..|.+|++.||+|-|.|..|...|+.|.+. |. +=+-+.|++|-|+... .|+..+.
T Consensus 218 ~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~-----GA------kVVaVSD~~G~iy~~~--Gld~~~l 275 (444)
T PRK14031 218 MLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLEL-----GG------KVVTMSDSDGYIYDPD--GIDREKL 275 (444)
T ss_pred HHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC--CCCHHHH
Confidence 899999999999999999999999999999763 64 3455699999988754 4655443
No 19
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.01 E-value=0.0035 Score=65.25 Aligned_cols=177 Identities=20% Similarity=0.299 Sum_probs=103.4
Q ss_pred HHHHHhHhcCCCCCc-----chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHHHHHHHHcCCCCeeecCCcchhHHHHH
Q 008629 210 KLALYTALGGIRPSA-----EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLA 284 (559)
Q Consensus 210 Kl~LY~a~gGI~P~~-----~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af~lL~ryr~~~~~FnDDiQGTaaV~LA 284 (559)
=-.||..++|+|-.- ..-+.=+.|-.|.+..+ -...++ .=-.+|+++=++.|.+.-+. .|-.+|+.+
T Consensus 93 ~~HLf~Va~GLdS~v~GE~qIlgQvk~A~~~a~~~g~-~~~~L~---~lf~~a~~~~k~vr~et~i~----~~~~sv~~~ 164 (311)
T cd05213 93 VRHLFRVASGLDSMVVGETQILGQVKNAYKLAKEAGT-SGKLLN---RLFQKAIKVGKRVRTETGIS----RGAVSISSA 164 (311)
T ss_pred HHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHHHcCC-chHHHH---HHHHHHHHHHHHHhhhcCCC----CCCcCHHHH
Confidence 358888999988765 11121222222222211 000010 01147777777777654444 344566666
Q ss_pred HHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc
Q 008629 285 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 364 (559)
Q Consensus 285 gll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~ 364 (559)
++-.|....|. +.+.+|+|+|+|..|..++..+.. .|. ++|+++|+. .+| .......|-..
T Consensus 165 Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~-----~g~------~~V~v~~r~----~~r---a~~la~~~g~~ 225 (311)
T cd05213 165 AVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAA-----KGV------AEITIANRT----YER---AEELAKELGGN 225 (311)
T ss_pred HHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHH-----cCC------CEEEEEeCC----HHH---HHHHHHHcCCe
Confidence 66666555554 889999999999999988888865 243 679988874 222 11122222111
Q ss_pred cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC--CCcEEEecCCCC
Q 008629 365 HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN--EKPLILALSNPT 417 (559)
Q Consensus 365 ~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~--erPIIFaLSNPt 417 (559)
.....++.++++. .|++|-+++.+.. +++++.+.+.. ..-+|+=||||-
T Consensus 226 ~~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viDlavPr 276 (311)
T cd05213 226 AVPLDELLELLNE--ADVVISATGAPHY--AKIVERAMKKRSGKPRLIVDLAVPR 276 (311)
T ss_pred EEeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEEeCCCC
Confidence 1112357787775 8999999887753 66666654322 234777899986
No 20
>PLN02477 glutamate dehydrogenase
Probab=96.99 E-value=0.016 Score=63.16 Aligned_cols=182 Identities=22% Similarity=0.250 Sum_probs=123.6
Q ss_pred chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHH--HHHHHHcC----CCCee----------ecCCcchhHHHHHHHHH
Q 008629 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF--ELLAKYGT----THLVF----------NDDIQGTASVVLAGVVA 288 (559)
Q Consensus 225 ~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af--~lL~ryr~----~~~~F----------nDDiQGTaaV~LAgll~ 288 (559)
+-..+...|+.++.+.-||..=|-=+|++..-.- -+.++|+. .-.|+ .+--.-||-=+..++-.
T Consensus 116 e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~~~~~ 195 (410)
T PLN02477 116 ELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVVFATEA 195 (410)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHHHHHHH
Confidence 5677889999999998888655556777653221 15677753 11111 22334577777888888
Q ss_pred HHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEE-EEcccCccccCCcCCCchhch-hhcccc-
Q 008629 289 ALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKK-PWAHEH- 365 (559)
Q Consensus 289 Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~-lvD~~GLi~~~R~~~l~~~k~-~fA~~~- 365 (559)
+++..|.+|+..||+|.|-|..|-+.|++|.+ .|. +|. +.|++|-|+... .|+.... .+.+..
T Consensus 196 ~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e-----~Ga-------kVVaVsD~~G~iy~~~--GLD~~~L~~~k~~~g 261 (410)
T PLN02477 196 LLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHE-----KGG-------KIVAVSDITGAVKNEN--GLDIPALRKHVAEGG 261 (410)
T ss_pred HHHHcCCCccCCEEEEECCCHHHHHHHHHHHH-----cCC-------EEEEEECCCCeEECCC--CCCHHHHHHHHHhcC
Confidence 89989999999999999999999999998865 363 455 899999999875 3442211 111110
Q ss_pred -----C--CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 008629 366 -----E--PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 429 (559)
Q Consensus 366 -----~--~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~EctpedA~~ 429 (559)
+ ..-+-.+.+. .+.||||=+. .++.+|++.+..+ .-.||.--+| |+ -+| +++.+.
T Consensus 262 ~l~~~~~a~~i~~~e~l~-~~~DvliP~A-l~~~I~~~na~~i----~ak~I~egAN~p~-t~e--a~~~L~ 324 (410)
T PLN02477 262 GLKGFPGGDPIDPDDILV-EPCDVLIPAA-LGGVINKENAADV----KAKFIVEAANHPT-DPE--ADEILR 324 (410)
T ss_pred chhccccceEecCcccee-ccccEEeecc-ccccCCHhHHHHc----CCcEEEeCCCCCC-CHH--HHHHHH
Confidence 0 0012234343 4899999665 4779999999986 6889999999 66 344 445554
No 21
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.92 E-value=0.011 Score=58.99 Aligned_cols=130 Identities=21% Similarity=0.236 Sum_probs=91.6
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchh
Q 008629 278 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 357 (559)
Q Consensus 278 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~ 357 (559)
||-=+..++-.+++..+.+|+..||+|.|-|..|.++|++|.+. |. +-+.+.|++|-++.. + |+..
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~-----G~------~vV~vsD~~g~i~~~-G--ld~~ 67 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEE-----GG------KVLAVSDPDGYIYDP-G--ITTE 67 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEEcCCCcEECC-C--CCHH
Confidence 44446667778889999999999999999999999999999763 54 678899999988876 4 3322
Q ss_pred -chhhccccCCCCC-------HHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHh
Q 008629 358 -KKPWAHEHEPVNN-------LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAY 428 (559)
Q Consensus 358 -k~~fA~~~~~~~~-------L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~EctpedA~ 428 (559)
...++++...... =.+.+-.++.||||=++. ++..|++..+.+ .-++|.--+| |++. .+++.+
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~-~~~i~~~~a~~l----~a~~V~e~AN~p~t~---~a~~~L 139 (217)
T cd05211 68 ELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCAL-GNVIDLENAKKL----KAKVVAEGANNPTTD---EALRIL 139 (217)
T ss_pred HHHHHHHhhCCccccCcccccCcccceeccccEEeeccc-cCccChhhHhhc----CccEEEeCCCCCCCH---HHHHHH
Confidence 1222221110000 013344568899997776 569999999988 4789998888 8742 456666
Q ss_pred c
Q 008629 429 T 429 (559)
Q Consensus 429 ~ 429 (559)
.
T Consensus 140 ~ 140 (217)
T cd05211 140 H 140 (217)
T ss_pred H
Confidence 4
No 22
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.86 E-value=0.0054 Score=66.54 Aligned_cols=120 Identities=27% Similarity=0.423 Sum_probs=78.4
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
+..+|+.+++--|.+..| ++.+.+++|+|+|..|..++..+.. .|. ++|+++|+. ..| ...
T Consensus 161 ~~~Sv~~~Av~~a~~~~~-~~~~~~vlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~r~----~~r---a~~ 221 (423)
T PRK00045 161 GAVSVASAAVELAKQIFG-DLSGKKVLVIGAGEMGELVAKHLAE-----KGV------RKITVANRT----LER---AEE 221 (423)
T ss_pred CCcCHHHHHHHHHHHhhC-CccCCEEEEECchHHHHHHHHHHHH-----CCC------CeEEEEeCC----HHH---HHH
Confidence 355666666554444444 6888999999999999999888764 364 578888774 122 111
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCC--CCcEEEecCCCC
Q 008629 357 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFN--EKPLILALSNPT 417 (559)
Q Consensus 357 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~--erPIIFaLSNPt 417 (559)
..+.|..+..+..++.+++. +.|++|-+++.+ ..++++.++.+.+.. ...+|+=||+|-
T Consensus 222 la~~~g~~~~~~~~~~~~l~--~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Pr 283 (423)
T PRK00045 222 LAEEFGGEAIPLDELPEALA--EADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPR 283 (423)
T ss_pred HHHHcCCcEeeHHHHHHHhc--cCCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCC
Confidence 22222111111235667776 489999988755 478999999875322 335888899997
No 23
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.80 E-value=0.0079 Score=65.64 Aligned_cols=129 Identities=18% Similarity=0.236 Sum_probs=93.0
Q ss_pred CCCeee----------cCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhccc
Q 008629 267 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 336 (559)
Q Consensus 267 ~~~~Fn----------DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~ 336 (559)
.+|+|+ |...||+--++-+++ |.++..+...+++|+|+|..|.++|..+.. .|. +
T Consensus 163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~---r~t~~~l~GktVvViG~G~IG~~va~~ak~-----~Ga-------~ 227 (413)
T cd00401 163 KFPAINVNDSVTKSKFDNLYGCRESLIDGIK---RATDVMIAGKVAVVAGYGDVGKGCAQSLRG-----QGA-------R 227 (413)
T ss_pred CCCEEEecchhhcccccccchhchhhHHHHH---HhcCCCCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 677774 667899998887776 467788999999999999999999988764 363 4
Q ss_pred EEEEcccCccccCCcCCCchhchhhcccc-CCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 008629 337 ICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 415 (559)
Q Consensus 337 i~lvD~~GLi~~~R~~~l~~~k~~fA~~~-~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 415 (559)
++++|.+ ..| ..+|+.. -...++.++++. .|++|-+++..++|+++.++.|. ..-+|.-.+.
T Consensus 228 ViV~d~d----~~R--------~~~A~~~G~~~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk---~GgilvnvG~ 290 (413)
T cd00401 228 VIVTEVD----PIC--------ALQAAMEGYEVMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMK---DGAIVCNIGH 290 (413)
T ss_pred EEEEECC----hhh--------HHHHHhcCCEEccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEeCC
Confidence 7777753 222 2233221 111246788864 79999999888888888888886 5557766777
Q ss_pred CCCCCCCCHHHHhc
Q 008629 416 PTSQSECTAEEAYT 429 (559)
Q Consensus 416 Pt~~~EctpedA~~ 429 (559)
+. .|+.+.+...
T Consensus 291 ~~--~eId~~~L~~ 302 (413)
T cd00401 291 FD--VEIDVKGLKE 302 (413)
T ss_pred CC--CccCHHHHHh
Confidence 64 7888887654
No 24
>PLN02494 adenosylhomocysteinase
Probab=96.69 E-value=0.023 Score=63.07 Aligned_cols=131 Identities=17% Similarity=0.268 Sum_probs=95.1
Q ss_pred CCCeee----------cCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhccc
Q 008629 267 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 336 (559)
Q Consensus 267 ~~~~Fn----------DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~ 336 (559)
.+|+|| |...||+--++-|++ |.++..+...+++|+|.|..|.++|..+.. .|. +
T Consensus 215 ~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~---r~t~i~LaGKtVvViGyG~IGr~vA~~aka-----~Ga-------~ 279 (477)
T PLN02494 215 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAGKVAVICGYGDVGKGCAAAMKA-----AGA-------R 279 (477)
T ss_pred CCCEEEEcChhhhhhhhccccccccHHHHHH---HhcCCccCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 688886 557899888888777 567888999999999999999999999853 264 4
Q ss_pred EEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 008629 337 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 416 (559)
Q Consensus 337 i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 416 (559)
++++|.+.. |. +.....-| ...++.|+++. .|++|=+++..++++++.++.|. +.-++.-.+.+
T Consensus 280 VIV~e~dp~----r~--~eA~~~G~-----~vv~leEal~~--ADVVI~tTGt~~vI~~e~L~~MK---~GAiLiNvGr~ 343 (477)
T PLN02494 280 VIVTEIDPI----CA--LQALMEGY-----QVLTLEDVVSE--ADIFVTTTGNKDIIMVDHMRKMK---NNAIVCNIGHF 343 (477)
T ss_pred EEEEeCCch----hh--HHHHhcCC-----eeccHHHHHhh--CCEEEECCCCccchHHHHHhcCC---CCCEEEEcCCC
Confidence 777776421 10 11111111 11258888875 89999877777788999999986 66788888887
Q ss_pred CCCCCCCHHHHhcc
Q 008629 417 TSQSECTAEEAYTW 430 (559)
Q Consensus 417 t~~~EctpedA~~w 430 (559)
. .|+.-++..++
T Consensus 344 ~--~eID~~aL~~~ 355 (477)
T PLN02494 344 D--NEIDMLGLETY 355 (477)
T ss_pred C--CccCHHHHhhc
Confidence 6 77877766654
No 25
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.63 E-value=0.014 Score=60.42 Aligned_cols=138 Identities=19% Similarity=0.255 Sum_probs=91.1
Q ss_pred cchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 276 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 276 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
..+-+++=.++.-+++..+..|.+.+++|+|+|..|..+|+.+... |. +++++|++. . .+.
T Consensus 128 ~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~-----G~-------~V~v~~R~~----~---~~~ 188 (287)
T TIGR02853 128 YNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSAL-----GA-------RVFVGARSS----A---DLA 188 (287)
T ss_pred EccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHC-----CC-------EEEEEeCCH----H---HHH
Confidence 4555666667777788888999999999999999999999999652 53 588887741 1 111
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcE
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRA 435 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~a 435 (559)
..+ .+....-...+|.+.++. .|++|=+. ..+.++++.++.|. +.-+|+=+|..- -++.++.|-+ -.-++
T Consensus 189 ~~~-~~g~~~~~~~~l~~~l~~--aDiVint~-P~~ii~~~~l~~~k---~~aliIDlas~P--g~tdf~~Ak~-~G~~a 258 (287)
T TIGR02853 189 RIT-EMGLIPFPLNKLEEKVAE--IDIVINTI-PALVLTADVLSKLP---KHAVIIDLASKP--GGTDFEYAKK-RGIKA 258 (287)
T ss_pred HHH-HCCCeeecHHHHHHHhcc--CCEEEECC-ChHHhCHHHHhcCC---CCeEEEEeCcCC--CCCCHHHHHH-CCCEE
Confidence 111 000011112357777774 89999654 34578999998885 466888776522 4556655544 34477
Q ss_pred EEeeCCC
Q 008629 436 IFASGSP 442 (559)
Q Consensus 436 ifAsGSP 442 (559)
+.+-|-|
T Consensus 259 ~~~~glP 265 (287)
T TIGR02853 259 LLAPGLP 265 (287)
T ss_pred EEeCCCC
Confidence 8888865
No 26
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.61 E-value=0.015 Score=62.04 Aligned_cols=113 Identities=21% Similarity=0.341 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 278 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 278 TaaV~LAgll~Alr~~g~~l~d~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
|+++...++--|.+..|..|++.+++|.|| |+.|--++++|... .|. ++++++++. ..| +..
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~----~gv------~~lilv~R~----~~r---l~~ 196 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAK----TGV------AELLLVARQ----QER---LQE 196 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhh----CCC------CEEEEEcCC----HHH---HHH
Confidence 677888888888999999999999999999 89999999988642 243 578888764 112 333
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCC--CCHHHHHHHHcCCCCc-EEEecCCCCC
Q 008629 357 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRT--FTKEVIEAMASFNEKP-LILALSNPTS 418 (559)
Q Consensus 357 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~--Ft~evv~~Ma~~~erP-IIFaLSNPt~ 418 (559)
.+.++.. ....+|.+++.. +|+++=+++.+.. ++++.+ ++| +|+=++.|-.
T Consensus 197 La~el~~--~~i~~l~~~l~~--aDiVv~~ts~~~~~~I~~~~l-------~~~~~viDiAvPRD 250 (340)
T PRK14982 197 LQAELGG--GKILSLEEALPE--ADIVVWVASMPKGVEIDPETL-------KKPCLMIDGGYPKN 250 (340)
T ss_pred HHHHhcc--ccHHhHHHHHcc--CCEEEECCcCCcCCcCCHHHh-------CCCeEEEEecCCCC
Confidence 3333321 122468888875 9999988776432 677655 344 5556899864
No 27
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.61 E-value=0.015 Score=56.05 Aligned_cols=92 Identities=22% Similarity=0.339 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchh
Q 008629 282 VLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP 360 (559)
Q Consensus 282 ~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~ 360 (559)
+..+.+-.++-...+|++.+++++|+|. .|..+|+.|.. .|. ++++++++
T Consensus 27 ~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~-----~g~-------~V~v~~r~----------------- 77 (168)
T cd01080 27 TPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLN-----RNA-------TVTVCHSK----------------- 77 (168)
T ss_pred hHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhh-----CCC-------EEEEEECC-----------------
Confidence 3334444555556789999999999997 59888888865 252 58888763
Q ss_pred hccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 361 WAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 361 fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
..+|.+.++. .|++|.+++.+..|+++.++ +.-+|+=++.|-
T Consensus 78 -------~~~l~~~l~~--aDiVIsat~~~~ii~~~~~~------~~~viIDla~pr 119 (168)
T cd01080 78 -------TKNLKEHTKQ--ADIVIVAVGKPGLVKGDMVK------PGAVVIDVGINR 119 (168)
T ss_pred -------chhHHHHHhh--CCEEEEcCCCCceecHHHcc------CCeEEEEccCCC
Confidence 0357778886 99999999988899999764 346888888876
No 28
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.40 E-value=0.0037 Score=57.42 Aligned_cols=102 Identities=25% Similarity=0.435 Sum_probs=66.6
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc---cCCCCCH
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNL 371 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~---~~~~~~L 371 (559)
.++++.|++++|||.+|-+++..|.. .|. ++|+++++. .+| .....+.|-.. ..+..++
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~-----~g~------~~i~i~nRt----~~r---a~~l~~~~~~~~~~~~~~~~~ 69 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAA-----LGA------KEITIVNRT----PER---AEALAEEFGGVNIEAIPLEDL 69 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHH-----TTS------SEEEEEESS----HHH---HHHHHHHHTGCSEEEEEGGGH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHH-----cCC------CEEEEEECC----HHH---HHHHHHHcCccccceeeHHHH
Confidence 37999999999999999888887765 365 789999874 222 23333333110 1123456
Q ss_pred HHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEecCCCCC
Q 008629 372 LDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNPTS 418 (559)
Q Consensus 372 ~e~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLSNPt~ 418 (559)
.+.+.. .|++|-+++.+ -.++++.++..... ..+||=||+|-.
T Consensus 70 ~~~~~~--~DivI~aT~~~~~~i~~~~~~~~~~~--~~~v~Dla~Pr~ 113 (135)
T PF01488_consen 70 EEALQE--ADIVINATPSGMPIITEEMLKKASKK--LRLVIDLAVPRD 113 (135)
T ss_dssp CHHHHT--ESEEEE-SSTTSTSSTHHHHTTTCHH--CSEEEES-SS-S
T ss_pred HHHHhh--CCeEEEecCCCCcccCHHHHHHHHhh--hhceeccccCCC
Confidence 666764 99999998776 37888888653211 249999999964
No 29
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.22 E-value=0.038 Score=60.27 Aligned_cols=128 Identities=20% Similarity=0.258 Sum_probs=87.7
Q ss_pred CCCeee----------cCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhccc
Q 008629 267 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 336 (559)
Q Consensus 267 ~~~~Fn----------DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~ 336 (559)
.+|+|+ |...||+--++-+++ |.++..+...+++|+|.|..|.++|..+.. .|. +
T Consensus 156 ~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~-----~Ga-------~ 220 (406)
T TIGR00936 156 KFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAGKTVVVAGYGWCGKGIAMRARG-----MGA-------R 220 (406)
T ss_pred CCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCcCEEEEECCCHHHHHHHHHHhh-----CcC-------E
Confidence 678886 667899977766655 567778999999999999999999998764 253 5
Q ss_pred EEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 008629 337 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 416 (559)
Q Consensus 337 i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 416 (559)
++++|.+- .|. +.... +.-...++.|+++. .|++|-+++..++++.+.+..|. +.-||.-.+..
T Consensus 221 ViV~d~dp----~r~--~~A~~-----~G~~v~~leeal~~--aDVVItaTG~~~vI~~~~~~~mK---~GailiN~G~~ 284 (406)
T TIGR00936 221 VIVTEVDP----IRA--LEAAM-----DGFRVMTMEEAAKI--GDIFITATGNKDVIRGEHFENMK---DGAIVANIGHF 284 (406)
T ss_pred EEEEeCCh----hhH--HHHHh-----cCCEeCCHHHHHhc--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEECCC
Confidence 88887641 111 11111 11112357888874 89999888777788888888775 55577766666
Q ss_pred CCCCCCCHHHH
Q 008629 417 TSQSECTAEEA 427 (559)
Q Consensus 417 t~~~EctpedA 427 (559)
. .|+.-++.
T Consensus 285 ~--~eId~~aL 293 (406)
T TIGR00936 285 D--VEIDVKAL 293 (406)
T ss_pred C--ceeCHHHH
Confidence 4 55555444
No 30
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.05 E-value=0.34 Score=53.76 Aligned_cols=176 Identities=17% Similarity=0.173 Sum_probs=121.9
Q ss_pred chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHHH---HHHHHcC---CC-Ceeec----------CCcchhHHHHHHHH
Q 008629 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYGT---TH-LVFND----------DIQGTASVVLAGVV 287 (559)
Q Consensus 225 ~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af~---lL~ryr~---~~-~~FnD----------DiQGTaaV~LAgll 287 (559)
|-..|...||..+.+..||+.=|-=.|++. +..+ +.+.|+. .. .|+-. --.-||-=+..++-
T Consensus 147 El~r~~r~f~~eL~~~IGp~~DvpA~DvGt-~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~~~~~ 225 (454)
T PTZ00079 147 EVMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLVYFVL 225 (454)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccchhhcCC-CHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHHHHHH
Confidence 567888999999999999999999999984 3333 5566652 11 22211 12237777778888
Q ss_pred HHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEE-EEcccCccccCCcCCCchhch-------
Q 008629 288 AALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKK------- 359 (559)
Q Consensus 288 ~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~-lvD~~GLi~~~R~~~l~~~k~------- 359 (559)
.+++..|.+|++.|++|-|.|..|...|+.|.+. |. +++ +.|++|-|+... .|+..+.
T Consensus 226 ~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~-----Ga-------kVVavSD~~G~iy~~~--Gld~~~l~~l~~~k 291 (454)
T PTZ00079 226 EVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQL-----GA-------KVLTMSDSDGYIHEPN--GFTKEKLAYLMDLK 291 (454)
T ss_pred HHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEEcCCCcEECCC--CCCHHHHHHHHHHH
Confidence 8999999999999999999999999999998763 63 455 999999999875 3544332
Q ss_pred --------hhccccCCC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCC
Q 008629 360 --------PWAHEHEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTS 418 (559)
Q Consensus 360 --------~fA~~~~~~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~ 418 (559)
.|+...... -+-.+ +-.++.|||+=+.. .+..|++-.+.+-+. .-.+|.=-+| |++
T Consensus 292 ~~~~g~i~~~~~~~~~a~~~~~~~-~~~~~cDI~iPcA~-~n~I~~~~a~~l~~~-~ak~V~EgAN~p~t 358 (454)
T PTZ00079 292 NVKRGRLKEYAKHSSTAKYVPGKK-PWEVPCDIAFPCAT-QNEINLEDAKLLIKN-GCKLVAEGANMPTT 358 (454)
T ss_pred hhcCCcHHhhhhccCCcEEeCCcC-cccCCccEEEeccc-cccCCHHHHHHHHHc-CCeEEEecCCCCCC
Confidence 221100000 01111 22367899997776 569999999988433 4568888888 663
No 31
>PLN00203 glutamyl-tRNA reductase
Probab=96.05 E-value=0.021 Score=64.04 Aligned_cols=218 Identities=18% Similarity=0.261 Sum_probs=121.3
Q ss_pred cHHHHHHHHcCCCCeeecCCcchhHHHHHHHHHHHHHhCC-CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc
Q 008629 256 NAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGG-TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 334 (559)
Q Consensus 256 ~Af~lL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~-~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~ 334 (559)
.||..=+|-|.+.-+ -.|--+|+-+++=-|.+.-|. +|.+.+|+|+|||..|..++..+.. .|.
T Consensus 226 ~Ai~~~KrVRteT~I----~~~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~-----~G~------ 290 (519)
T PLN00203 226 HAITAGKRVRTETNI----ASGAVSVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVS-----KGC------ 290 (519)
T ss_pred HHHHHHHHHhhccCC----CCCCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHh-----CCC------
Confidence 455555555543211 123345555566556666664 6999999999999999888877753 364
Q ss_pred ccEEEEcccCccccCCcCCCchhchhhcc---ccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCC---CC
Q 008629 335 KKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFN---EK 407 (559)
Q Consensus 335 ~~i~lvD~~GLi~~~R~~~l~~~k~~fA~---~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~---er 407 (559)
++|+++++. .+| .......|-. ...+..++.+++.. .|++|.+++.+ .+|++++++.|-... .+
T Consensus 291 ~~V~V~nRs----~er---a~~La~~~~g~~i~~~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~ 361 (519)
T PLN00203 291 TKMVVVNRS----EER---VAALREEFPDVEIIYKPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPPASDTVGG 361 (519)
T ss_pred CeEEEEeCC----HHH---HHHHHHHhCCCceEeecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhhcccccCC
Confidence 679988874 222 2222222210 01123467788875 89999886544 489999999984321 24
Q ss_pred c-EEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHH
Q 008629 408 P-LILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLA 486 (559)
Q Consensus 408 P-IIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~a 486 (559)
| +|+=||.|-.--.+-. ...|+++|===-|-.+......-..+-...
T Consensus 362 ~~~~IDLAvPRdIdp~v~--------------------------------~l~~v~lydiDdL~~i~~~n~~~R~~~~~~ 409 (519)
T PLN00203 362 KRLFVDISVPRNVGACVS--------------------------------ELESARVYNVDDLKEVVAANKEDRLRKAME 409 (519)
T ss_pred CeEEEEeCCCCCCccccc--------------------------------cCCCCeEEEeccHHHHHHHhHHHHHHHHHH
Confidence 4 5667999963111110 111222221111222222222111111111
Q ss_pred HHHHH-HhccC--ccccCCCcccCCCCCccchHHHHHHHHHHHHHHh
Q 008629 487 ASEAL-AKQVT--EENFEKGLIYPPFSNIRKISANIAANVAAKAYEL 530 (559)
Q Consensus 487 AA~aL-A~~v~--~~~~~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~ 530 (559)
|+.+ .+.+. .+.+....+-|-+.++|+-...|..+=.+.+.+.
T Consensus 410 -Ae~II~ee~~~F~~w~~~~~~~p~I~~lr~~~~~i~~~Eler~~~k 455 (519)
T PLN00203 410 -AQTIIREESKNFEAWRDSLETVPTIKKLRSYAERIRAAELEKCLSK 455 (519)
T ss_pred -HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222 11111 1134456789999999999999988888888764
No 32
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.05 E-value=0.12 Score=57.44 Aligned_cols=123 Identities=18% Similarity=0.176 Sum_probs=85.1
Q ss_pred CCCeeecCCcchhHHH-------HHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEE
Q 008629 267 THLVFNDDIQGTASVV-------LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 339 (559)
Q Consensus 267 ~~~~FnDDiQGTaaV~-------LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~l 339 (559)
.+|++|-+--.|-.+. ++.+-+.+|.++..|...+++|+|.|..|.++|..+.. .|. ++++
T Consensus 215 ~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a-----~Ga-------~ViV 282 (476)
T PTZ00075 215 LFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRG-----FGA-------RVVV 282 (476)
T ss_pred CceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEE
Confidence 6899986654444432 44445557788899999999999999999999999864 263 4777
Q ss_pred EcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 340 VDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 340 vD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
+|++- .+. +.... +.-...++.++++. .|++|-+.+..++|+++.++.|. +.-|+.-.+...
T Consensus 283 ~e~dp----~~a--~~A~~-----~G~~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MK---pGAiLINvGr~d 344 (476)
T PTZ00075 283 TEIDP----ICA--LQAAM-----EGYQVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMK---NNAIVGNIGHFD 344 (476)
T ss_pred EeCCc----hhH--HHHHh-----cCceeccHHHHHhc--CCEEEECCCcccccCHHHHhccC---CCcEEEEcCCCc
Confidence 76641 110 11111 11112468888875 99999988888899999999997 555766666653
No 33
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.00 E-value=0.068 Score=53.78 Aligned_cols=123 Identities=24% Similarity=0.294 Sum_probs=88.5
Q ss_pred cchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 276 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 276 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
.-||-=+..++-.+++..+.+|++.||+|.|-|..|-++|++|.+. |. +=+.+.|++|-++...+ |+
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~G--ld 74 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPDG--LD 74 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCCC--CC
Confidence 3566667778888888889999999999999999999999988763 54 44559999999988653 43
Q ss_pred hhch-hhccccC--------CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 008629 356 HFKK-PWAHEHE--------PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 417 (559)
Q Consensus 356 ~~k~-~fA~~~~--------~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt 417 (559)
.... .+.+... ..-+-.+ +-..+.||||=++ .++..|++.+..+ .-++|.--+| |+
T Consensus 75 ~~~l~~~~~~~g~l~~~~~~~~~~~~~-i~~~~~Dvlip~a-~~~~i~~~~~~~l----~a~~I~egAN~~~ 140 (227)
T cd01076 75 VPALLAYKKEHGSVLGFPGAERITNEE-LLELDCDILIPAA-LENQITADNADRI----KAKIIVEAANGPT 140 (227)
T ss_pred HHHHHHHHHhcCCcccCCCceecCCcc-ceeecccEEEecC-ccCccCHHHHhhc----eeeEEEeCCCCCC
Confidence 2221 1111100 0012233 3345889999777 5779999999988 4889999999 55
No 34
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.95 E-value=0.058 Score=56.11 Aligned_cols=132 Identities=22% Similarity=0.295 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchh
Q 008629 281 VVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP 360 (559)
Q Consensus 281 V~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~ 360 (559)
++-+++..+++..+..+...|++|+|+|.+|..++..+.. .|. +++++|++- .+ +...+..
T Consensus 134 ~aegav~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~-----~Ga-------~V~v~~r~~----~~---~~~~~~~ 194 (296)
T PRK08306 134 TAEGAIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKA-----LGA-------NVTVGARKS----AH---LARITEM 194 (296)
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHH-----CCC-------EEEEEECCH----HH---HHHHHHc
Confidence 3334566677778889999999999999999999888864 252 688888861 11 1111000
Q ss_pred hccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCC-cEEEee
Q 008629 361 WAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG-RAIFAS 439 (559)
Q Consensus 361 fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G-~aifAs 439 (559)
-++ .-...+|.+.++. .|++|-++. ...++++.++.|. +..+|+=++... -.|..+.|.+ .| +++.++
T Consensus 195 G~~-~~~~~~l~~~l~~--aDiVI~t~p-~~~i~~~~l~~~~---~g~vIIDla~~p--ggtd~~~a~~--~Gv~~~~~~ 263 (296)
T PRK08306 195 GLS-PFHLSELAEEVGK--IDIIFNTIP-ALVLTKEVLSKMP---PEALIIDLASKP--GGTDFEYAEK--RGIKALLAP 263 (296)
T ss_pred CCe-eecHHHHHHHhCC--CCEEEECCC-hhhhhHHHHHcCC---CCcEEEEEccCC--CCcCeeehhh--CCeEEEEEC
Confidence 000 0112367788874 999998754 4578999998886 566777565433 2344443332 34 345556
Q ss_pred CCC
Q 008629 440 GSP 442 (559)
Q Consensus 440 GSP 442 (559)
|-|
T Consensus 264 ~lp 266 (296)
T PRK08306 264 GLP 266 (296)
T ss_pred CCC
Confidence 644
No 35
>PRK14030 glutamate dehydrogenase; Provisional
Probab=95.77 E-value=0.34 Score=53.64 Aligned_cols=185 Identities=16% Similarity=0.119 Sum_probs=126.0
Q ss_pred chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHHH---HHHHHcC----CCCeeec---CC-------cchhHHHHHHHH
Q 008629 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYGT----THLVFND---DI-------QGTASVVLAGVV 287 (559)
Q Consensus 225 ~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af~---lL~ryr~----~~~~FnD---Di-------QGTaaV~LAgll 287 (559)
|-..+.-.||..+.+..||+.=|-=.|++. ++.. +++.|+. ...++.- +. ..||-=+.-++-
T Consensus 138 Eler~~r~f~~~L~~~iGp~~DIpApDvgt-~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~~~~~ 216 (445)
T PRK14030 138 EIMRFCQAFMLELWRHIGPDTDVPAGDIGV-GGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGALYFVH 216 (445)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCccccccCC-CHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHHHHHH
Confidence 667788899999998889988777778874 3332 5677754 2223211 12 237877888888
Q ss_pred HHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchh-------
Q 008629 288 AALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP------- 360 (559)
Q Consensus 288 ~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~------- 360 (559)
.+++..|.+|++.||+|-|-|..|...|+.|.+. |. +=+-+-|++|-|+... .|+..+..
T Consensus 217 ~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~-----Ga------kvVavSD~~G~i~d~~--Gld~~~l~~l~~~k~ 283 (445)
T PRK14030 217 QMLETKGIDIKGKTVAISGFGNVAWGAATKATEL-----GA------KVVTISGPDGYIYDPD--GISGEKIDYMLELRA 283 (445)
T ss_pred HHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC--CCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999653 64 5577889999998764 35443311
Q ss_pred --------hccccCCC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 008629 361 --------WAHEHEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 429 (559)
Q Consensus 361 --------fA~~~~~~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~EctpedA~~ 429 (559)
++...+.. -+-.+ +-.++.||||=+.. ++..|++.++.+.++ .-.||.=-+| |++ +| +++++.
T Consensus 284 ~~~~~~~~~~~~~~ga~~i~~~~-~~~~~cDVliPcAl-~n~I~~~na~~l~~~-~ak~V~EgAN~p~t-~e--A~~iL~ 357 (445)
T PRK14030 284 SGNDIVAPYAEKFPGSTFFAGKK-PWEQKVDIALPCAT-QNELNGEDADKLIKN-GVLCVAEVSNMGCT-AE--AIDKFI 357 (445)
T ss_pred hcCccHHHHHhcCCCCEEcCCcc-ceeccccEEeeccc-cccCCHHHHHHHHHc-CCeEEEeCCCCCCC-HH--HHHHHH
Confidence 11010010 01122 22457899996665 579999999998532 4678888888 543 33 445554
No 36
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.76 E-value=0.065 Score=55.74 Aligned_cols=108 Identities=19% Similarity=0.316 Sum_probs=80.2
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+.+-+|-.|++..++..+.+++..++|++|+|- +|-.+|.+|.. .| | .+.+++++
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~-----~g-----a--tVtv~~~~------------ 192 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLN-----AN-----A--TVTICHSR------------ 192 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-----CC-----C--EEEEEeCC------------
Confidence 447777899999999999999999999999997 99999998864 25 2 57777752
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEec-CCCCC--C-CCCCHHHHh
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL-SNPTS--Q-SECTAEEAY 428 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL-SNPt~--~-~EctpedA~ 428 (559)
..+|.+.++ +.|++|-+++.++.|+.+.++ +.-+|+=. .||.. . -++.+|++.
T Consensus 193 ------------t~~L~~~~~--~aDIvI~AtG~~~~v~~~~lk------~gavViDvg~n~~~~~~~GDvd~~~~~ 249 (283)
T PRK14192 193 ------------TQNLPELVK--QADIIVGAVGKPELIKKDWIK------QGAVVVDAGFHPRDGGGVGDIELQGIE 249 (283)
T ss_pred ------------chhHHHHhc--cCCEEEEccCCCCcCCHHHcC------CCCEEEEEEEeecCCCCcccccHHHhh
Confidence 124666666 499999999989889988874 45566554 36631 1 145555554
No 37
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=95.72 E-value=0.05 Score=59.50 Aligned_cols=253 Identities=20% Similarity=0.294 Sum_probs=145.4
Q ss_pred HHHHhHhcCCCCCc--c---hhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHHHHHHHHcCCCCeeecCCcchhHHHHHH
Q 008629 211 LALYTALGGIRPSA--E---YAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAG 285 (559)
Q Consensus 211 l~LY~a~gGI~P~~--~---y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af~lL~ryr~~~~~FnDDiQGTaaV~LAg 285 (559)
-.||..++|+|--- | --+.=+.|-.|.+..+ -..++ ++=-..||..=+|+|.+--+ -.|--+|.-|+
T Consensus 94 ~HLfrVAsGLDSmVlGE~QILGQVK~Ay~~a~~~g~-~g~~L---~~lFqkAi~~gKrvRseT~I----~~~~VSi~saA 165 (414)
T COG0373 94 RHLFRVASGLDSLVLGETQILGQVKDAYAKAQENGT-LGKVL---NRLFQKAISVGKRVRSETGI----GKGAVSISSAA 165 (414)
T ss_pred HHHHHHhccchhhhcCcHHHHHHHHHHHHHHHHcCC-chHHH---HHHHHHHHHHHHHhhcccCC----CCCccchHHHH
Confidence 47899999988665 1 1111233333333322 11111 11124677777777753110 12333445555
Q ss_pred HHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc
Q 008629 286 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH 365 (559)
Q Consensus 286 ll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~ 365 (559)
+=-|-++.|. |++.+++|+|||..|-.+|.-|.. .|+ ++|+++.+. ..|. +.+|+.-
T Consensus 166 v~lA~~~~~~-L~~~~vlvIGAGem~~lva~~L~~-----~g~------~~i~IaNRT----~erA-------~~La~~~ 222 (414)
T COG0373 166 VELAKRIFGS-LKDKKVLVIGAGEMGELVAKHLAE-----KGV------KKITIANRT----LERA-------EELAKKL 222 (414)
T ss_pred HHHHHHHhcc-cccCeEEEEcccHHHHHHHHHHHh-----CCC------CEEEEEcCC----HHHH-------HHHHHHh
Confidence 5555555554 999999999999999999888876 365 788887662 2221 1233321
Q ss_pred ----CCCCCHHHHhcccCCcEEEecc-CCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeC
Q 008629 366 ----EPVNNLLDAVKVIKPTILIGSS-GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASG 440 (559)
Q Consensus 366 ----~~~~~L~e~V~~vkPtvLIG~S-~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsG 440 (559)
-....|.+.+.. .||+|-.+ ++.-+++.+.++.-.+..++=+||=|+||-.- .+
T Consensus 223 ~~~~~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRdi---------e~---------- 281 (414)
T COG0373 223 GAEAVALEELLEALAE--ADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRDV---------EP---------- 281 (414)
T ss_pred CCeeecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCCC---------Cc----------
Confidence 122456677765 88888654 44468899988876544444499999999831 11
Q ss_pred CCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHH-----HhccCccccCCCcccCCCCCccch
Q 008629 441 SPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEAL-----AKQVTEENFEKGLIYPPFSNIRKI 515 (559)
Q Consensus 441 SPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aL-----A~~v~~~~~~~~~l~P~~~~ir~v 515 (559)
..+.-||+++|-==-|-.+.-.-..-..+.. ++|+++ +.+. +.+..-.+-|.+..+|+-
T Consensus 282 -------------~v~~l~~v~l~~iDDL~~iv~~n~~~R~~~~-~~ae~iIeee~~~~~--~~l~~~~~~~~i~~lr~~ 345 (414)
T COG0373 282 -------------EVGELPNVFLYTIDDLEEIVEENLEARKEEA-AKAEAIIEEELAEFM--EWLKKLEVVPTIRALREQ 345 (414)
T ss_pred -------------cccCcCCeEEEehhhHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHH--HHHHHhhchHHHHHHHHH
Confidence 1233456666654444444333222222222 222222 2221 134556788999999988
Q ss_pred HHHHHHHHHHHHHHhC
Q 008629 516 SANIAANVAAKAYELG 531 (559)
Q Consensus 516 s~~VA~aVa~~A~~~G 531 (559)
+..|...-.+.|.+.-
T Consensus 346 a~~v~~~ele~a~~~l 361 (414)
T COG0373 346 AEDVREEELEKALKKL 361 (414)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8888888888887543
No 38
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.58 E-value=0.23 Score=51.17 Aligned_cols=134 Identities=20% Similarity=0.143 Sum_probs=90.5
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
-||-=+.-++-.+++..+.+|+..||+|-|-|..|.+.|++|.+ .|. +=+-+.|++|-|+... .|+.
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e-----~Ga------kvvaVsD~~G~i~~~~--Gld~ 82 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLE-----LGA------KVVTLSDSKGYVYDPD--GFTG 82 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC------EEEEEECCCceEECCC--CCCH
Confidence 45655677777888888999999999999999999999999976 364 3344999999998875 3432
Q ss_pred hch---------------hhccccC--CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCC
Q 008629 357 FKK---------------PWAHEHE--PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTS 418 (559)
Q Consensus 357 ~k~---------------~fA~~~~--~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~ 418 (559)
.+. .|....+ ..-+-.|.. .++.||||=+.. ++..|++.+..+.. +.-.||.--+| |++
T Consensus 83 ~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~-~~~~DIliPcAl-~~~I~~~na~~i~~-~~ak~I~EgAN~p~t 159 (254)
T cd05313 83 EKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPW-EVPCDIAFPCAT-QNEVDAEDAKLLVK-NGCKYVAEGANMPCT 159 (254)
T ss_pred HHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchh-cCCCcEEEeccc-cccCCHHHHHHHHH-cCCEEEEeCCCCCCC
Confidence 211 1110000 001222322 457899996655 67999999999843 35689999998 773
Q ss_pred CCCCCHHHHhc
Q 008629 419 QSECTAEEAYT 429 (559)
Q Consensus 419 ~~EctpedA~~ 429 (559)
+ .+++.+.
T Consensus 160 -~--~a~~~L~ 167 (254)
T cd05313 160 -A--EAIEVFR 167 (254)
T ss_pred -H--HHHHHHH
Confidence 2 2445444
No 39
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.55 E-value=0.044 Score=59.83 Aligned_cols=210 Identities=14% Similarity=0.195 Sum_probs=112.9
Q ss_pred cHHHHHHHHcCCCCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcc
Q 008629 256 NAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 335 (559)
Q Consensus 256 ~Af~lL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~ 335 (559)
.||+.=+|.|.+.-+ -.|.-+|+-+|+=-|.+.- .++++.|++|+|||.+|-.+|..|.. .|. +
T Consensus 143 ~A~~~aKrVrteT~I----~~~~vSv~~~Av~la~~~~-~~l~~kkvlviGaG~~a~~va~~L~~-----~g~------~ 206 (414)
T PRK13940 143 KVFATAKRVRSETRI----GHCPVSVAFSAITLAKRQL-DNISSKNVLIIGAGQTGELLFRHVTA-----LAP------K 206 (414)
T ss_pred HHHHHHHHHHhccCC----CCCCcCHHHHHHHHHHHHh-cCccCCEEEEEcCcHHHHHHHHHHHH-----cCC------C
Confidence 566666666653211 0122234444443343333 35889999999999999888887754 365 6
Q ss_pred cEEEEcccCccccCCcCCCchhchhhc-cccCCCCCHHHHhcccCCcEEEeccCCCC-CCCHHHHHHHHcCCCCcE-EEe
Q 008629 336 KICLVDSKGLIVSSRKDSLQHFKKPWA-HEHEPVNNLLDAVKVIKPTILIGSSGVGR-TFTKEVIEAMASFNEKPL-ILA 412 (559)
Q Consensus 336 ~i~lvD~~GLi~~~R~~~l~~~k~~fA-~~~~~~~~L~e~V~~vkPtvLIG~S~~~g-~Ft~evv~~Ma~~~erPI-IFa 412 (559)
+|+++++. .+|. ......|. ....+..+|.+.+.. .|++|-+++.+. ++|++.++ .+|+ |+=
T Consensus 207 ~I~V~nRt----~~ra---~~La~~~~~~~~~~~~~l~~~l~~--aDiVI~aT~a~~~vi~~~~~~------~~~~~~iD 271 (414)
T PRK13940 207 QIMLANRT----IEKA---QKITSAFRNASAHYLSELPQLIKK--ADIIIAAVNVLEYIVTCKYVG------DKPRVFID 271 (414)
T ss_pred EEEEECCC----HHHH---HHHHHHhcCCeEecHHHHHHHhcc--CCEEEECcCCCCeeECHHHhC------CCCeEEEE
Confidence 79988774 2221 11222221 011123457777775 999999887663 67866542 4665 467
Q ss_pred cCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHH----
Q 008629 413 LSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS---- 488 (559)
Q Consensus 413 LSNPt~~~EctpedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA---- 488 (559)
|++|-.-- | . .+...|+++|===-|-.+......-..+....|-
T Consensus 272 LavPRdid---p--~---------------------------v~~l~~v~l~~iDdl~~i~~~n~~~R~~~~~~a~~iI~ 319 (414)
T PRK13940 272 ISIPQALD---P--K---------------------------LGELEQNVYYCVDDINAVIEDNKDKRKYESSKAQKIIV 319 (414)
T ss_pred eCCCCCCC---c--c---------------------------ccCcCCeEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997210 0 0 0111223322211222222221111111122211
Q ss_pred HHHHhccCccccCCCcccCCCCCccchHHHHHHHHHHHHHHh
Q 008629 489 EALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYEL 530 (559)
Q Consensus 489 ~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~ 530 (559)
+.+.++. +.+....+-|-+.++|+-...|...-.+.+.+.
T Consensus 320 e~~~~f~--~w~~~~~~~p~I~~lr~~~~~i~~~el~r~~~~ 359 (414)
T PRK13940 320 KSLEEYL--EKEKAIISNSAIKELFQKADGLVDLSLEKSLAK 359 (414)
T ss_pred HHHHHHH--HHHHhccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2222221 134456789999999988888888888877754
No 40
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.42 E-value=0.089 Score=55.02 Aligned_cols=96 Identities=17% Similarity=0.331 Sum_probs=76.3
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+-.-+|-+|++.-++-.+.+|+..+++++|+|. .|..+|.+|.. .| ..+++++++.
T Consensus 136 ~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~-----~g-------atVtv~~s~t----------- 192 (286)
T PRK14175 136 TFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQ-----KN-------ASVTILHSRS----------- 192 (286)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHH-----CC-------CeEEEEeCCc-----------
Confidence 445778899999999999999999999999988 99999999864 24 3577777531
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 416 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 416 (559)
.+|.+.++. +|++|...+.++.|++++++ +.-+|+=++.|
T Consensus 193 -------------~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk------~gavVIDvGi~ 232 (286)
T PRK14175 193 -------------KDMASYLKD--ADVIVSAVGKPGLVTKDVVK------EGAVIIDVGNT 232 (286)
T ss_pred -------------hhHHHHHhh--CCEEEECCCCCcccCHHHcC------CCcEEEEcCCC
Confidence 257788886 99999999999999998774 44566655543
No 41
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.42 E-value=0.044 Score=56.70 Aligned_cols=90 Identities=18% Similarity=0.290 Sum_probs=57.4
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch-hchhhc
Q 008629 284 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-FKKPWA 362 (559)
Q Consensus 284 Agll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~-~k~~fA 362 (559)
.|++.+++..+..++..+++++|||.||-.++..|.. .|+ ++|+++|+. ..|.+.|.+ .+..+.
T Consensus 112 ~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~-----~G~------~~I~I~nR~----~~ka~~la~~l~~~~~ 176 (284)
T PRK12549 112 SGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLT-----LGV------ERLTIFDVD----PARAAALADELNARFP 176 (284)
T ss_pred HHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHHHHHHHHHHhhCC
Confidence 4567777765567888999999999999999888875 375 679999985 233222221 111111
Q ss_pred c-ccCCCCCHHHHhcccCCcEEEeccCCC
Q 008629 363 H-EHEPVNNLLDAVKVIKPTILIGSSGVG 390 (559)
Q Consensus 363 ~-~~~~~~~L~e~V~~vkPtvLIG~S~~~ 390 (559)
. ......++.+.++. +|++|.++..|
T Consensus 177 ~~~~~~~~~~~~~~~~--aDiVInaTp~G 203 (284)
T PRK12549 177 AARATAGSDLAAALAA--ADGLVHATPTG 203 (284)
T ss_pred CeEEEeccchHhhhCC--CCEEEECCcCC
Confidence 0 01112345556653 89999988655
No 42
>PLN00106 malate dehydrogenase
Probab=95.35 E-value=0.098 Score=55.41 Aligned_cols=118 Identities=25% Similarity=0.333 Sum_probs=80.3
Q ss_pred HHHHHHHHHhCCCcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhc
Q 008629 284 AGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 362 (559)
Q Consensus 284 Agll~Alr~~g~~l~d~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA 362 (559)
|.-+.|+|..|..-. .||+|+|| |..|.-+|..|.. .|+ ...+.|+|.+- ..+-.-+|.+-.. +.
T Consensus 4 ~~~~~~~~~~~~~~~-~KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~el~L~Di~~--~~g~a~Dl~~~~~-~~ 69 (323)
T PLN00106 4 ASSLRACRAKGGAPG-FKVAVLGAAGGIGQPLSLLMKM-----NPL-----VSELHLYDIAN--TPGVAADVSHINT-PA 69 (323)
T ss_pred hhhhhccccccCCCC-CEEEEECCCCHHHHHHHHHHHh-----CCC-----CCEEEEEecCC--CCeeEchhhhCCc-Cc
Confidence 345678888887665 59999999 9999999987764 254 25799999865 1111112332211 11
Q ss_pred ccc--CCCCCHHHHhcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 363 HEH--EPVNNLLDAVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 363 ~~~--~~~~~L~e~V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
+-. ...+++.++++. .|++|=+.+.+.. ..+++++.+.+++.+.||+.-|||.
T Consensus 70 ~i~~~~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 70 QVRGFLGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred eEEEEeCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 111 123467888886 8888877665422 3467788889999999999999999
No 43
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=95.25 E-value=0.28 Score=47.52 Aligned_cols=121 Identities=20% Similarity=0.302 Sum_probs=75.6
Q ss_pred cchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 276 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 276 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
.||+--++-|++ |.|+..|...++|++|-|--|-|||+.+... |. ++.++|.+=+ ..++
T Consensus 3 yG~g~S~~d~i~---r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~-----Ga-------~V~V~e~DPi------~alq 61 (162)
T PF00670_consen 3 YGTGQSLVDGIM---RATNLMLAGKRVVVIGYGKVGKGIARALRGL-----GA-------RVTVTEIDPI------RALQ 61 (162)
T ss_dssp HHHHHHHHHHHH---HHH-S--TTSEEEEE--SHHHHHHHHHHHHT-----T--------EEEEE-SSHH------HHHH
T ss_pred cccchhHHHHHH---hcCceeeCCCEEEEeCCCcccHHHHHHHhhC-----CC-------EEEEEECChH------HHHH
Confidence 467776777776 5788999999999999999999999998763 53 5676665310 0122
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 429 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~ 429 (559)
.+- +.-+..++.|+++. +|++|-+++...+.+.|.++.|. +.-|+.-..- ..-|+.-+..-+
T Consensus 62 A~~-----dGf~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mk---dgail~n~Gh--~d~Eid~~~L~~ 123 (162)
T PF00670_consen 62 AAM-----DGFEVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMK---DGAILANAGH--FDVEIDVDALEA 123 (162)
T ss_dssp HHH-----TT-EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS----TTEEEEESSS--STTSBTHHHHHT
T ss_pred hhh-----cCcEecCHHHHHhh--CCEEEECCCCccccCHHHHHHhc---CCeEEeccCc--CceeEeeccccc
Confidence 111 22223479999985 99999999988899999999997 5556654443 236777766443
No 44
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.23 E-value=0.063 Score=49.04 Aligned_cols=108 Identities=22% Similarity=0.334 Sum_probs=67.5
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc
Q 008629 284 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 363 (559)
Q Consensus 284 Agll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~ 363 (559)
.|+.+|++..+.++++.+++|+|+|..|..+++.+... |. .+++++|+. .++ .......+..
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~-----g~------~~v~v~~r~----~~~---~~~~~~~~~~ 65 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAEL-----GA------AKIVIVNRT----LEK---AKALAERFGE 65 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHC-----CC------CEEEEEcCC----HHH---HHHHHHHHhh
Confidence 58899999988889999999999998888888777542 31 568888874 111 2222222221
Q ss_pred c--cCCCCCHHHHhcccCCcEEEeccCCCC------CCCHHHHHHHHcCCCCcEEEecC-CCC
Q 008629 364 E--HEPVNNLLDAVKVIKPTILIGSSGVGR------TFTKEVIEAMASFNEKPLILALS-NPT 417 (559)
Q Consensus 364 ~--~~~~~~L~e~V~~vkPtvLIG~S~~~g------~Ft~evv~~Ma~~~erPIIFaLS-NPt 417 (559)
. .....++.++++ ++|++|-+...+- .|.+.. ..+..+|+=+| +|.
T Consensus 66 ~~~~~~~~~~~~~~~--~~Dvvi~~~~~~~~~~~~~~~~~~~------~~~~~~v~D~~~~~~ 120 (155)
T cd01065 66 LGIAIAYLDLEELLA--EADLIINTTPVGMKPGDELPLPPSL------LKPGGVVYDVVYNPL 120 (155)
T ss_pred cccceeecchhhccc--cCCEEEeCcCCCCCCCCCCCCCHHH------cCCCCEEEEcCcCCC
Confidence 1 012345667666 4999998776442 132222 23667787775 454
No 45
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=94.97 E-value=0.12 Score=49.67 Aligned_cols=54 Identities=31% Similarity=0.441 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 278 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 278 TaaV~LAgll~Alr~~g~~l~d~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
|++.+++.+..+++..|..+++.+++++|+ |..|..++..+.. .| .++++++++
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~-----~g-------~~V~l~~R~ 61 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAR-----EG-------ARVVLVGRD 61 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHH-----CC-------CEEEEEcCC
Confidence 677777778888888889999999999997 9988888887764 24 368888764
No 46
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.86 E-value=0.079 Score=56.84 Aligned_cols=95 Identities=19% Similarity=0.317 Sum_probs=63.6
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc----ccCCCCCHH
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH----EHEPVNNLL 372 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~----~~~~~~~L~ 372 (559)
+...+++|+|+|.+|.++++.+... |. ++.++|++ ..| +......|.. ...+...|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~l-----Ga-------~V~v~d~~----~~~---~~~l~~~~g~~v~~~~~~~~~l~ 225 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGL-----GA-------TVTILDIN----IDR---LRQLDAEFGGRIHTRYSNAYEIE 225 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHC-----CC-------eEEEEECC----HHH---HHHHHHhcCceeEeccCCHHHHH
Confidence 5678899999999999999988653 63 48888874 111 2222112211 111123578
Q ss_pred HHhcccCCcEEEeccCC-----CCCCCHHHHHHHHcCCCCcEEEecCC
Q 008629 373 DAVKVIKPTILIGSSGV-----GRTFTKEVIEAMASFNEKPLILALSN 415 (559)
Q Consensus 373 e~V~~vkPtvLIG~S~~-----~g~Ft~evv~~Ma~~~erPIIFaLSN 415 (559)
+.++. .|++|.+... +.++|++.++.|. ++.+|+-+|-
T Consensus 226 ~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk---~g~vIvDva~ 268 (370)
T TIGR00518 226 DAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMK---PGAVIVDVAI 268 (370)
T ss_pred HHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCC---CCCEEEEEec
Confidence 88874 8999988633 4468999999985 5678887774
No 47
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=94.82 E-value=0.19 Score=49.41 Aligned_cols=122 Identities=17% Similarity=0.214 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHHHHh--CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 278 TASVVLAGVVAALKLI--GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 278 TaaV~LAgll~Alr~~--g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
||-=+..++-.+++.. +.+|++.+|+|.|.|..|..+|+.|.+. |. +++++|++. +.+.
T Consensus 5 Tg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~-----G~-------~Vvv~D~~~-------~~~~ 65 (200)
T cd01075 5 TAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEE-----GA-------KLIVADINE-------EAVA 65 (200)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEcCCH-------HHHH
Confidence 5555566677777775 8899999999999999999999988753 63 688888651 1233
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 429 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~EctpedA~~ 429 (559)
.++..|.. ... +..+... .+.|+++=++. ++..|++.++.|. -++|..-+| |++. ..+++.++
T Consensus 66 ~~~~~~g~--~~v-~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l~----~~~v~~~AN~~~~~--~~~~~~L~ 129 (200)
T cd01075 66 RAAELFGA--TVV-APEEIYS-VDADVFAPCAL-GGVINDDTIPQLK----AKAIAGAANNQLAD--PRHGQMLH 129 (200)
T ss_pred HHHHHcCC--EEE-cchhhcc-ccCCEEEeccc-ccccCHHHHHHcC----CCEEEECCcCccCC--HhHHHHHH
Confidence 33333311 111 2233333 36999995555 6799999999994 678888888 6632 33455554
No 48
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=94.67 E-value=0.18 Score=53.93 Aligned_cols=122 Identities=11% Similarity=0.166 Sum_probs=72.5
Q ss_pred CcHHHHHHHHcCCCCeeecCCcchhHHHHHH--HHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhh
Q 008629 255 HNAFELLAKYGTTHLVFNDDIQGTASVVLAG--VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE 332 (559)
Q Consensus 255 ~~Af~lL~ryr~~~~~FnDDiQGTaaV~LAg--ll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~ee 332 (559)
..||..=+|.|.+.-+ |.++|.++. +..+ +.. .+|++.+++++|||..|--+|+.|.. .|.
T Consensus 136 ~~A~~~aKrVRteT~I------~~~~vSv~s~av~~~-~~~-~~l~~k~vLvIGaGem~~l~a~~L~~-----~g~---- 198 (338)
T PRK00676 136 QKALKEGKVFRSKGGA------PYAEVTIESVVQQEL-RRR-QKSKKASLLFIGYSEINRKVAYYLQR-----QGY---- 198 (338)
T ss_pred HHHHHHHHHHhhhcCC------CCCCcCHHHHHHHHH-HHh-CCccCCEEEEEcccHHHHHHHHHHHH-----cCC----
Confidence 3566666666653211 444444443 3333 333 56999999999999988777776655 365
Q ss_pred hcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHH-HHhc-ccCCcEEEec----cCCCCCCCHHHHHHHHcCCC
Q 008629 333 TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLL-DAVK-VIKPTILIGS----SGVGRTFTKEVIEAMASFNE 406 (559)
Q Consensus 333 A~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~-e~V~-~vkPtvLIG~----S~~~g~Ft~evv~~Ma~~~e 406 (559)
++|+++.+.-. + .+|.. +. +++. ..+.||+|-. +++....+.+.++.. -+
T Consensus 199 --~~i~v~nRt~~----~--------~~~~~-------~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~---~~ 254 (338)
T PRK00676 199 --SRITFCSRQQL----T--------LPYRT-------VVREELSFQDPYDVIFFGSSESAYAFPHLSWESLADI---PD 254 (338)
T ss_pred --CEEEEEcCCcc----c--------cchhh-------hhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhhc---cC
Confidence 67998877531 1 22321 10 1111 1358999964 333346677765532 22
Q ss_pred CcEEEecCCCCC
Q 008629 407 KPLILALSNPTS 418 (559)
Q Consensus 407 rPIIFaLSNPt~ 418 (559)
| ++|=||+|-.
T Consensus 255 r-~~iDLAvPRd 265 (338)
T PRK00676 255 R-IVFDFNVPRT 265 (338)
T ss_pred c-EEEEecCCCC
Confidence 4 9999999984
No 49
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.42 E-value=0.088 Score=54.32 Aligned_cols=104 Identities=19% Similarity=0.177 Sum_probs=63.1
Q ss_pred CCCeeecCCcchhHHHHHHHHHHHHHhCC--CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 267 THLVFNDDIQGTASVVLAGVVAALKLIGG--TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 267 ~~~~FnDDiQGTaaV~LAgll~Alr~~g~--~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
+..=+|-|.. |++.+++-.+. .+++.+++++|||.||-.|+-.|.. .|. ++|+++++.
T Consensus 99 ~l~G~NTD~~--------G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~-----~G~------~~i~I~nRt- 158 (282)
T TIGR01809 99 IWKGDNTDWD--------GIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALAS-----LGV------TDITVINRN- 158 (282)
T ss_pred cEEEecCCHH--------HHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHH-----cCC------CeEEEEeCC-
Confidence 3455777754 45667776663 6889999999999998888777654 375 689999874
Q ss_pred ccccCCcCCCchhchhhcccc--CCCC---CHHHHhcccCCcEEEeccCCCCCCCHHHH
Q 008629 345 LIVSSRKDSLQHFKKPWAHEH--EPVN---NLLDAVKVIKPTILIGSSGVGRTFTKEVI 398 (559)
Q Consensus 345 Li~~~R~~~l~~~k~~fA~~~--~~~~---~L~e~V~~vkPtvLIG~S~~~g~Ft~evv 398 (559)
.+|.+.|.+ .|.... .... ++.+++. ++|++|.++..+-.++.+.+
T Consensus 159 ---~~ka~~La~---~~~~~~~~~~~~~~~~~~~~~~--~~DiVInaTp~g~~~~~~~l 209 (282)
T TIGR01809 159 ---PDKLSRLVD---LGVQVGVITRLEGDSGGLAIEK--AAEVLVSTVPADVPADYVDL 209 (282)
T ss_pred ---HHHHHHHHH---HhhhcCcceeccchhhhhhccc--CCCEEEECCCCCCCCCHHHh
Confidence 233222321 111100 0111 2333343 58999999887754554433
No 50
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.11 E-value=0.067 Score=45.31 Aligned_cols=95 Identities=13% Similarity=0.249 Sum_probs=62.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEE-cccCccccCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 379 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lv-D~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 379 (559)
||.|+|+|..|..+++.+... |. ...+|+++ +++ .+.+.+.++.|..... ..+..|+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~----~~~~v~~~~~r~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~-- 61 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GI----KPHEVIIVSSRS-------PEKAAELAKEYGVQAT-ADDNEEAAQE-- 61 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEESS-------HHHHHHHHHHCTTEEE-SEEHHHHHHH--
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC----CceeEEeeccCc-------HHHHHHHHHhhccccc-cCChHHhhcc--
Confidence 789999999999999888763 54 34677755 543 1224444434321100 1268999995
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 008629 380 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 416 (559)
Q Consensus 380 PtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 416 (559)
+|++| ++-.+ ..-+++++.+....+..+|.-++||
T Consensus 62 advvi-lav~p-~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 62 ADVVI-LAVKP-QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp TSEEE-E-S-G-GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred CCEEE-EEECH-HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 99888 66655 4566788888667788899888886
No 51
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.09 E-value=0.11 Score=53.29 Aligned_cols=123 Identities=16% Similarity=0.170 Sum_probs=71.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhc-------hhhccc--------
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-------KPWAHE-------- 364 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k-------~~fA~~-------- 364 (559)
.||.|+|+|..|.+||..+... |. +++++|.+- + .++..+ ..+...
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~~----~---~l~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----GF-------DVTIYDISD----E---ALEKAKERIAKLADRYVRDLEATKEAP 64 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----CC-------eEEEEeCCH----H---HHHHHHHHHHHHHHHHHHcCCCChhhh
Confidence 5899999999999999888653 53 688898641 1 111111 011000
Q ss_pred -------cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEE
Q 008629 365 -------HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIF 437 (559)
Q Consensus 365 -------~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aif 437 (559)
-....++.++++. .|++|=+-...-.+.+++++...+.+....|+ .||.+++ .+.++.+.++-.-=|
T Consensus 65 ~~~~~~~i~~~~d~~~a~~~--aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii-~sntSt~---~~~~~~~~~~~~~r~ 138 (287)
T PRK08293 65 AEAALNRITLTTDLAEAVKD--ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIF-ATNSSTL---LPSQFAEATGRPEKF 138 (287)
T ss_pred HHHHHcCeEEeCCHHHHhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEE-EECcccC---CHHHHHhhcCCcccE
Confidence 0112578888875 78888543322235677788887776665666 3566554 444444433211113
Q ss_pred eeCCCCCCce
Q 008629 438 ASGSPFDPFE 447 (559)
Q Consensus 438 AsGSPF~pv~ 447 (559)
....||.|+.
T Consensus 139 vg~Hf~~p~~ 148 (287)
T PRK08293 139 LALHFANEIW 148 (287)
T ss_pred EEEcCCCCCC
Confidence 3457888764
No 52
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.97 E-value=0.6 Score=48.94 Aligned_cols=93 Identities=15% Similarity=0.213 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 278 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 278 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
-.-+|-+|++..++-.+.+|+..+++++|-|. .|.-+|.+|.. .|. .+.+++++
T Consensus 138 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~-----~~a-------tVtv~hs~------------- 192 (285)
T PRK10792 138 LRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLL-----AGC-------TVTVCHRF------------- 192 (285)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CCC-------eEEEEECC-------------
Confidence 34778899999999999999999999999998 99999998864 243 46677653
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 008629 357 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 414 (559)
Q Consensus 357 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 414 (559)
.++|.+.+++ +|++|-+.+.++.|+.++|+ +.-+|.=..
T Consensus 193 -----------T~~l~~~~~~--ADIvi~avG~p~~v~~~~vk------~gavVIDvG 231 (285)
T PRK10792 193 -----------TKNLRHHVRN--ADLLVVAVGKPGFIPGEWIK------PGAIVIDVG 231 (285)
T ss_pred -----------CCCHHHHHhh--CCEEEEcCCCcccccHHHcC------CCcEEEEcc
Confidence 1358888886 99999999999999999987 666776555
No 53
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=93.82 E-value=0.14 Score=52.18 Aligned_cols=128 Identities=23% Similarity=0.329 Sum_probs=87.1
Q ss_pred CcchhHHHHHHHHHHHHHhCCC-cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCC
Q 008629 275 IQGTASVVLAGVVAALKLIGGT-LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDS 353 (559)
Q Consensus 275 iQGTaaV~LAgll~Alr~~g~~-l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~ 353 (559)
-+-||-=+..++-.+++..|.. ++..|++|-|.|..|...|+.|.+. |. +=+-+.|++|.|++..+-+
T Consensus 7 ~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~-----Ga------~vv~vsD~~G~i~~~~Gld 75 (244)
T PF00208_consen 7 SEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAEL-----GA------KVVAVSDSSGAIYDPDGLD 75 (244)
T ss_dssp TTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHT-----TE------EEEEEEESSEEEEETTEEH
T ss_pred CcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEecCceEEEcCCCch
Confidence 3457777778888888886766 9999999999999999999999773 53 4466778888888654211
Q ss_pred CchhchhhccccCC-CCCHH-----------H--HhcccCCcEEEeccCCCCCCCHHHHH-HHHcCCCCcEEEecCC-CC
Q 008629 354 LQHFKKPWAHEHEP-VNNLL-----------D--AVKVIKPTILIGSSGVGRTFTKEVIE-AMASFNEKPLILALSN-PT 417 (559)
Q Consensus 354 l~~~k~~fA~~~~~-~~~L~-----------e--~V~~vkPtvLIG~S~~~g~Ft~evv~-~Ma~~~erPIIFaLSN-Pt 417 (559)
.+..... .+.... ...+. + .+-.++.||||=+ +.++.+|++.+. .+.. .-+||.--+| |+
T Consensus 76 ~~~l~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~-A~~~~I~~~~~~~~i~~--~akiIvegAN~p~ 151 (244)
T PF00208_consen 76 VEELLRI-KEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPC-ALGNVINEDNAPSLIKS--GAKIIVEGANGPL 151 (244)
T ss_dssp HHHHHHH-HHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEE-SSSTSBSCHHHCHCHHT--T-SEEEESSSSSB
T ss_pred HHHHHHH-HHHhCCcccccccccccceeEeccccccccccccEEEEc-CCCCeeCHHHHHHHHhc--cCcEEEeCcchhc
Confidence 1111111 111111 11111 1 3445699999988 667899999998 6642 4689999999 55
No 54
>PRK05086 malate dehydrogenase; Provisional
Probab=93.65 E-value=0.38 Score=50.52 Aligned_cols=105 Identities=22% Similarity=0.264 Sum_probs=66.8
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc-cCCCCCHHHHhcc
Q 008629 300 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKV 377 (559)
Q Consensus 300 ~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~-~~~~~~L~e~V~~ 377 (559)
.||+|+|| |..|..+|.+|... .+. ...+.++|++-. ..+..-++.+. .....- .....++.+.++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~-----~~el~L~d~~~~-~~g~alDl~~~-~~~~~i~~~~~~d~~~~l~~ 69 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPA-----GSELSLYDIAPV-TPGVAVDLSHI-PTAVKIKGFSGEDPTPALEG 69 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCC-----ccEEEEEecCCC-CcceehhhhcC-CCCceEEEeCCCCHHHHcCC
Confidence 38999999 99999998877542 132 256889997522 11100012211 000000 0012467788876
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 378 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 378 vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.|++|=+.+.+ |. ..+++++.|.+++.+.+|+-.|||.
T Consensus 70 --~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 70 --ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred --CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 89888666653 21 5578999999999999999999998
No 55
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.40 E-value=0.13 Score=50.57 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=33.6
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+|++.||+++|+|..|.-+|+.|+.+ |+ ++|+++|.+
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~-----Gv------~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGA-----GV------GTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEecCC
Confidence 478899999999999999999988764 76 789999997
No 56
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=93.29 E-value=0.67 Score=43.60 Aligned_cols=89 Identities=18% Similarity=0.184 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhch
Q 008629 280 SVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK 359 (559)
Q Consensus 280 aV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~ 359 (559)
-++..|++..++..|.+++.++|+++|.+.. +.+-+...|.+ .|. .+..+|++.
T Consensus 9 p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~---vG~pla~lL~~-~ga-------tV~~~~~~t--------------- 62 (140)
T cd05212 9 SPVAKAVKELLNKEGVRLDGKKVLVVGRSGI---VGAPLQCLLQR-DGA-------TVYSCDWKT--------------- 62 (140)
T ss_pred ccHHHHHHHHHHHcCCCCCCCEEEEECCCch---HHHHHHHHHHH-CCC-------EEEEeCCCC---------------
Confidence 4678899999999999999999999998754 44555554444 353 466666531
Q ss_pred hhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 008629 360 PWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 411 (559)
Q Consensus 360 ~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 411 (559)
++|.+.++. +|++|-..+.++.|+.++|| +.-+|.
T Consensus 63 ---------~~l~~~v~~--ADIVvsAtg~~~~i~~~~ik------pGa~Vi 97 (140)
T cd05212 63 ---------IQLQSKVHD--ADVVVVGSPKPEKVPTEWIK------PGATVI 97 (140)
T ss_pred ---------cCHHHHHhh--CCEEEEecCCCCccCHHHcC------CCCEEE
Confidence 268888986 99999999999999999997 455555
No 57
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=93.07 E-value=0.17 Score=55.45 Aligned_cols=126 Identities=15% Similarity=0.259 Sum_probs=75.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc-cCC-----CCCHHH
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLLD 373 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~-~~~-----~~~L~e 373 (559)
.||+|+||||. -...++-..+.+...+ ..+.|||+|-+- ..|-+.+...-+.+++. ..+ ..++.|
T Consensus 1 ~KI~iIGaGS~--~tp~li~~l~~~~~~l----~~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~ 71 (419)
T cd05296 1 MKLTIIGGGSS--YTPELIEGLIRRYEEL----PVTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIKVHLTTDRRE 71 (419)
T ss_pred CEEEEECCchH--hHHHHHHHHHhccccC----CCCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHH
Confidence 48999999996 4444444433322233 237899999862 22211111111122221 111 257999
Q ss_pred HhcccCCcEEEeccCCCCC----------------------------------CCHHHHHHHHcCCCCcEEEecCCCCCC
Q 008629 374 AVKVIKPTILIGSSGVGRT----------------------------------FTKEVIEAMASFNEKPLILALSNPTSQ 419 (559)
Q Consensus 374 ~V~~vkPtvLIG~S~~~g~----------------------------------Ft~evv~~Ma~~~erPIIFaLSNPt~~ 419 (559)
|++. +|.+|=.-.+||. .=.++++.|.++|+.-+|+=.|||..
T Consensus 72 al~g--adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~- 148 (419)
T cd05296 72 ALEG--ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAG- 148 (419)
T ss_pred HhCC--CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHH-
Confidence 9986 7877755555542 12378888999999999999999983
Q ss_pred CCCCHHHHhcccCCcEEEeeC
Q 008629 420 SECTAEEAYTWSKGRAIFASG 440 (559)
Q Consensus 420 ~EctpedA~~wt~G~aifAsG 440 (559)
+..+-++++++-| +|.+|
T Consensus 149 --ivt~a~~k~~~~r-viGlc 166 (419)
T cd05296 149 --IVTEAVLRHTGDR-VIGLC 166 (419)
T ss_pred --HHHHHHHHhccCC-EEeeC
Confidence 4444556666444 55544
No 58
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.02 E-value=0.58 Score=52.65 Aligned_cols=106 Identities=17% Similarity=0.253 Sum_probs=63.7
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCC---C------------chhchh
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDS---L------------QHFKKP 360 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~---l------------~~~k~~ 360 (559)
.....|++|+|||.+|++.+..... .| | +++.+|.. .+|.+. + ......
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~-----lG-----A--~V~a~D~~----~~rle~aeslGA~~v~i~~~e~~~~~~g 225 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGS-----LG-----A--IVRAFDTR----PEVAEQVESMGAEFLELDFEEEGGSGDG 225 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEeCC----HHHHHHHHHcCCeEEEeccccccccccc
Confidence 3458999999999999888766654 36 2 47777764 111100 0 001112
Q ss_pred hccccCCCCCH--------HHHhcccCCcEEEeccCCCC-----CCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCH
Q 008629 361 WAHEHEPVNNL--------LDAVKVIKPTILIGSSGVGR-----TFTKEVIEAMASFNEKPLILALSNPT-SQSECTA 424 (559)
Q Consensus 361 fA~~~~~~~~L--------~e~V~~vkPtvLIG~S~~~g-----~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~Ectp 424 (559)
|++... .++ .+.++ +.|++|.+++.+| +++++.++.|. +.-+|.=++.+. ..+|++.
T Consensus 226 ya~~~s--~~~~~~~~~~~~~~~~--gaDVVIetag~pg~~aP~lit~~~v~~mk---pGgvIVdvg~~~GG~~e~t~ 296 (509)
T PRK09424 226 YAKVMS--EEFIKAEMALFAEQAK--EVDIIITTALIPGKPAPKLITAEMVASMK---PGSVIVDLAAENGGNCELTV 296 (509)
T ss_pred hhhhcc--hhHHHHHHHHHHhccC--CCCEEEECCCCCcccCcchHHHHHHHhcC---CCCEEEEEccCCCCCccccc
Confidence 333211 122 22222 4999999999866 67999999997 555666677753 3345553
No 59
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.95 E-value=0.071 Score=49.59 Aligned_cols=104 Identities=22% Similarity=0.384 Sum_probs=65.1
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc-CccccCCcCCCchhchhhccccCCCCCHHHHhccc
Q 008629 301 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 378 (559)
Q Consensus 301 riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~-GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v 378 (559)
||.|+|| |..|..+|-+|+.. |+ -+.|.|+|.+ .... +..-+|.+..-+.-++..-..+..+.++.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~-----~l-----~~ei~L~D~~~~~~~-g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~- 69 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQ-----GL-----ADEIVLIDINEDKAE-GEALDLSHASAPLPSPVRITSGDYEALKD- 69 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TT-----SSEEEEEESSHHHHH-HHHHHHHHHHHGSTEEEEEEESSGGGGTT-
T ss_pred EEEEECCCChHHHHHHHHHHhC-----CC-----CCceEEeccCcccce-eeehhhhhhhhhccccccccccccccccc-
Confidence 8999999 99999999988763 65 2559999987 2111 11001322221111111111255666775
Q ss_pred CCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 379 KPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 379 kPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.|++|=+.+.+ |- +-+++.+.+.+++...+++-.|||.
T Consensus 70 -aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPv 121 (141)
T PF00056_consen 70 -ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPV 121 (141)
T ss_dssp -ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSH
T ss_pred -ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcH
Confidence 89998665543 21 2246777888899999999999998
No 60
>PRK08328 hypothetical protein; Provisional
Probab=92.93 E-value=0.06 Score=54.04 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=73.5
Q ss_pred HHHHcCCCCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEE
Q 008629 261 LAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 340 (559)
Q Consensus 261 L~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lv 340 (559)
++||..++..|..+.| .+|++.||+++|+|..|.-+|+.|+.+ |+ ++|.++
T Consensus 7 ~~ry~Rq~~~~g~~~q------------------~~L~~~~VlIiG~GGlGs~ia~~La~~-----Gv------g~i~lv 57 (231)
T PRK08328 7 LERYDRQIMIFGVEGQ------------------EKLKKAKVAVVGVGGLGSPVAYYLAAA-----GV------GRILLI 57 (231)
T ss_pred HHHHhhHHHhcCHHHH------------------HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEE
Confidence 5788777666654321 457788999999999999999999764 76 789999
Q ss_pred cccCccccCCcCCCchhchhhccccCCC----CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE-ecCC
Q 008629 341 DSKGLIVSSRKDSLQHFKKPWAHEHEPV----NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL-ALSN 415 (559)
Q Consensus 341 D~~GLi~~~R~~~l~~~k~~fA~~~~~~----~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF-aLSN 415 (559)
|.+ .+.. .+|..+ --|-.+.-.. ....+.++...|++.|=... +-++++-+...-+ +..+|| +.-|
T Consensus 58 D~D-~ve~---sNL~Rq-~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~--~~~~~~~~~~~l~--~~D~Vid~~d~ 128 (231)
T PRK08328 58 DEQ-TPEL---SNLNRQ-ILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV--GRLSEENIDEVLK--GVDVIVDCLDN 128 (231)
T ss_pred cCC-ccCh---hhhccc-cccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe--ccCCHHHHHHHHh--cCCEEEECCCC
Confidence 987 2221 124321 1111111111 12344567778998876533 3467665554332 456777 4557
Q ss_pred CCC
Q 008629 416 PTS 418 (559)
Q Consensus 416 Pt~ 418 (559)
+.+
T Consensus 129 ~~~ 131 (231)
T PRK08328 129 FET 131 (231)
T ss_pred HHH
Confidence 653
No 61
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=92.91 E-value=0.17 Score=49.88 Aligned_cols=108 Identities=19% Similarity=0.236 Sum_probs=67.0
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCC--CCCHH
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP--VNNLL 372 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~--~~~L~ 372 (559)
.+|++.||+|+|+|..|.+||..|+.+ |+ +++.++|.+=+ .. .+|+.+ ..+..+-.. ...+.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~v-e~---sNL~Rq-~~~~~~iG~~Ka~~~~ 80 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARA-----GI------GKLILVDFDVV-EP---SNLNRQ-QYKASQVGEPKTEALK 80 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCCEE-cc---cccccc-cCChhhCCCHHHHHHH
Confidence 468899999999999999999999764 76 78999999822 22 235542 222211111 12467
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE-ecCCCCCCCCC
Q 008629 373 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL-ALSNPTSQSEC 422 (559)
Q Consensus 373 e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF-aLSNPt~~~Ec 422 (559)
+.++.+.|++-|-. ...-++++-+...-+ .--+|+ +.-||..+.+.
T Consensus 81 ~~l~~inp~~~i~~--~~~~i~~~~~~~~~~--~~DlVi~a~Dn~~~k~~l 127 (200)
T TIGR02354 81 ENISEINPYTEIEA--YDEKITEENIDKFFK--DADIVCEAFDNAEAKAML 127 (200)
T ss_pred HHHHHHCCCCEEEE--eeeeCCHhHHHHHhc--CCCEEEECCCCHHHHHHH
Confidence 77778888865433 233567766665433 233555 55676655443
No 62
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=92.75 E-value=0.22 Score=50.50 Aligned_cols=127 Identities=20% Similarity=0.305 Sum_probs=77.4
Q ss_pred EEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhh-ccccCCCCCHHHHhcccC
Q 008629 302 FLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNNLLDAVKVIK 379 (559)
Q Consensus 302 iv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~f-A~~~~~~~~L~e~V~~vk 379 (559)
|.|+|| |..|.++|..++.. |. .....++|+|.+.-..+....+|.+...++ ...-....++.++++.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~-- 70 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKD-- 70 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC---CcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCC--
Confidence 579999 98899999887652 41 123679999986411111111133222222 0011113567888886
Q ss_pred CcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--CCcEEEeeCC
Q 008629 380 PTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGS 441 (559)
Q Consensus 380 PtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt--~G~aifAsGS 441 (559)
.|++|=+.+.++. .-+++.++|.++|+..+++-.|||. .....-+++++ ...-+|++|.
T Consensus 71 aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~---d~~t~~~~~~sg~~~~kviG~~~ 145 (263)
T cd00650 71 ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPV---DIITYLVWRYSGLPKEKVIGLGT 145 (263)
T ss_pred CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCchhEEEeec
Confidence 9998866655432 3578889999999999999999998 33344455553 2233666664
No 63
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.74 E-value=0.41 Score=50.17 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchh
Q 008629 279 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 357 (559)
Q Consensus 279 aaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~ 357 (559)
.-+|-+|++.=++-.+.+++..+++++|.| ..|.-+|.++.. .|. .+.+++++ .
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~-----~gA-------tVtv~hs~-------t------ 191 (285)
T PRK14191 137 VPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLN-----AGA-------SVSVCHIL-------T------ 191 (285)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHH-----CCC-------EEEEEeCC-------c------
Confidence 457888889999999999999999999999 999999999864 253 35555432 1
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 358 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 358 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
++|.+.+++ +|++|...+.++.+++++|+
T Consensus 192 -----------~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk 220 (285)
T PRK14191 192 -----------KDLSFYTQN--ADIVCVGVGKPDLIKASMVK 220 (285)
T ss_pred -----------HHHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 246778886 99999999999999999995
No 64
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.42 E-value=0.45 Score=49.30 Aligned_cols=38 Identities=11% Similarity=-0.136 Sum_probs=28.7
Q ss_pred eCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHH
Q 008629 453 FVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEA 490 (559)
Q Consensus 453 ~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~a 490 (559)
..||+..|-+.++.+.=++.++..--++.+-+..+.+.
T Consensus 184 ~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~ 221 (308)
T PRK06129 184 EIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRD 221 (308)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 35778888888888888888888777877777766543
No 65
>PRK08223 hypothetical protein; Validated
Probab=92.41 E-value=0.25 Score=51.71 Aligned_cols=57 Identities=18% Similarity=0.107 Sum_probs=45.1
Q ss_pred HHHHHHHcCCCCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccE
Q 008629 258 FELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKI 337 (559)
Q Consensus 258 f~lL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i 337 (559)
|..-++|..++..|..+-| .+|++.||+|+|+|..|.-+|..|+.+ |+ ++|
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q------------------~kL~~s~VlIvG~GGLGs~va~~LA~a-----GV------G~i 54 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQ------------------QRLRNSRVAIAGLGGVGGIHLLTLARL-----GI------GKF 54 (287)
T ss_pred ccHHHHHhhhhhhcCHHHH------------------HHHhcCCEEEECCCHHHHHHHHHHHHh-----CC------CeE
Confidence 6666788766655544432 568899999999999999999988875 87 789
Q ss_pred EEEccc
Q 008629 338 CLVDSK 343 (559)
Q Consensus 338 ~lvD~~ 343 (559)
.++|.+
T Consensus 55 ~lvD~D 60 (287)
T PRK08223 55 TIADFD 60 (287)
T ss_pred EEEeCC
Confidence 999987
No 66
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=92.21 E-value=0.5 Score=49.17 Aligned_cols=125 Identities=14% Similarity=0.231 Sum_probs=74.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc--CCCCCHHHHhccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKVI 378 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~--~~~~~L~e~V~~v 378 (559)
||.|+|+|.+|..+|..++. .|+ ...|.++|.+-=..++-..+|.+.. .+.... -...+.. .++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-----~g~-----~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~~-~l~-- 67 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-----QGI-----ADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDYS-DCK-- 67 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCHH-HhC--
Confidence 89999999999999998764 365 2579999985211111111122111 111100 0012333 355
Q ss_pred CCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEEeeCCC
Q 008629 379 KPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFASGSP 442 (559)
Q Consensus 379 kPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~--G~aifAsGSP 442 (559)
..|++|=+++.+.. .=+++.+.|.+++..-+|+-.|||.. +...-++++++ -+-+|.+|.-
T Consensus 68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d---~~~~~~~~~~g~p~~~v~g~gt~ 144 (306)
T cd05291 68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVD---VITYVVQKLSGLPKNRVIGTGTS 144 (306)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHH---HHHHHHHHHhCcCHHHEeeccch
Confidence 59999988876521 12577888889999999999999983 34444444421 1236666654
No 67
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=92.11 E-value=1.1 Score=48.76 Aligned_cols=158 Identities=13% Similarity=0.119 Sum_probs=98.4
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchh
Q 008629 278 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 357 (559)
Q Consensus 278 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~ 357 (559)
.|=-+++.+++..|..|..|.+.++.|+|.|..|..+|+.+... |+ +++.+|... .. . .
T Consensus 95 VAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~-----G~-------~V~~~Dp~~------~~-~-~- 153 (381)
T PRK00257 95 VVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGL-----GW-------KVLVCDPPR------QE-A-E- 153 (381)
T ss_pred HHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECCcc------cc-c-c-
Confidence 34457889999999999999999999999999999999998753 75 577888631 10 0 0
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEec---c-----CCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc
Q 008629 358 KKPWAHEHEPVNNLLDAVKVIKPTILIGS---S-----GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 429 (559)
Q Consensus 358 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~---S-----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~ 429 (559)
......+|.|+++. .|+++=. + ..-+.|+++.+..|. +..++.=.|. -++--++|+.
T Consensus 154 ------~~~~~~~l~ell~~--aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk---~gailIN~aR----G~vVde~AL~ 218 (381)
T PRK00257 154 ------GDGDFVSLERILEE--CDVISLHTPLTKEGEHPTRHLLDEAFLASLR---PGAWLINASR----GAVVDNQALR 218 (381)
T ss_pred ------cCccccCHHHHHhh--CCEEEEeCcCCCCccccccccCCHHHHhcCC---CCeEEEECCC----CcccCHHHHH
Confidence 00123479998885 7877621 1 123789999999997 6778876655 4455555442
Q ss_pred c--cCCcEEEeeCCCC--CCceeCCeeeCccCccccccchhhHHHHHHhCC
Q 008629 430 W--SKGRAIFASGSPF--DPFEYNGKVFVPGQANNAYIFPGFGLGLVISGA 476 (559)
Q Consensus 430 w--t~G~aifAsGSPF--~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a 476 (559)
- ..|+...|-=-=| +|. .+.... ..|+.+-|=++-....++.
T Consensus 219 ~aL~~g~i~~a~LDV~e~EP~-~~~~L~----~~nvi~TPHiAg~s~e~~~ 264 (381)
T PRK00257 219 EALLSGEDLDAVLDVWEGEPQ-IDLELA----DLCTIATPHIAGYSLDGKA 264 (381)
T ss_pred HHHHhCCCcEEEEeCCCCCCC-CChhhh----hCCEEEcCccccCCHHHHH
Confidence 1 2454333211111 111 121111 1378888877755555443
No 68
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=92.03 E-value=0.32 Score=50.57 Aligned_cols=49 Identities=31% Similarity=0.413 Sum_probs=38.9
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 284 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 284 Agll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.|++.+++..+..+++.+++++|||-|+-+|+-.+.. .|+ ++|+++++.
T Consensus 109 ~Gf~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 109 TGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 4567788878888999999999999998777665543 375 689999984
No 69
>PRK08605 D-lactate dehydrogenase; Validated
Probab=92.02 E-value=2.6 Score=44.63 Aligned_cols=122 Identities=10% Similarity=0.190 Sum_probs=78.6
Q ss_pred cCCCCeeecC-C--cchhHHHHHHHHHHHHH-------------------hCCCcccceEEEeCcChHHHHHHHHHHHHH
Q 008629 265 GTTHLVFNDD-I--QGTASVVLAGVVAALKL-------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEI 322 (559)
Q Consensus 265 r~~~~~FnDD-i--QGTaaV~LAgll~Alr~-------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~~ 322 (559)
+..+.+.|-- . +..|=-+++.+|+.+|- .|..|.+.+|.|+|.|..|..+|+.+...
T Consensus 90 ~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~- 168 (332)
T PRK08605 90 KYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKG- 168 (332)
T ss_pred HCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHHHHHHHHHHHhc-
Confidence 4566666632 1 34455567777765542 24468899999999999999999998533
Q ss_pred HHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHH
Q 008629 323 SKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVI 398 (559)
Q Consensus 323 ~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~----~~g~Ft~evv 398 (559)
.|+ ++|.+|+.. . ... ..++ ....+|.|+++. .|+++=..- ..++|+++.+
T Consensus 169 ---~g~-------~V~~~d~~~----~--~~~----~~~~---~~~~~l~ell~~--aDvIvl~lP~t~~t~~li~~~~l 223 (332)
T PRK08605 169 ---YGS-------DVVAYDPFP----N--AKA----ATYV---DYKDTIEEAVEG--ADIVTLHMPATKYNHYLFNADLF 223 (332)
T ss_pred ---CCC-------EEEEECCCc----c--HhH----Hhhc---cccCCHHHHHHh--CCEEEEeCCCCcchhhhcCHHHH
Confidence 254 688888642 1 001 1111 123579999986 898885421 2357788888
Q ss_pred HHHHcCCCCcEEEecCC
Q 008629 399 EAMASFNEKPLILALSN 415 (559)
Q Consensus 399 ~~Ma~~~erPIIFaLSN 415 (559)
+.|. +..++.=+|.
T Consensus 224 ~~mk---~gailIN~sR 237 (332)
T PRK08605 224 KHFK---KGAVFVNCAR 237 (332)
T ss_pred hcCC---CCcEEEECCC
Confidence 8886 6678776665
No 70
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=91.82 E-value=0.38 Score=51.82 Aligned_cols=102 Identities=22% Similarity=0.267 Sum_probs=63.5
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCC-c-------CCCchhchhhccc--
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR-K-------DSLQHFKKPWAHE-- 364 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R-~-------~~l~~~k~~fA~~-- 364 (559)
.+|++.||+++|+|..|.-++..|+.+ |+ ++|.++|.+=+ ..+. . +++-..|..-+..
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~-----Gv------g~i~ivD~D~v-e~sNL~RQ~l~~~~diG~~Ka~~~~~~l 104 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASA-----GV------GTITLIDDDTV-DVSNIHRQILFGASDVGRPKVEVAAERL 104 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEeCCEE-ccccccccccCChhHCCCHHHHHHHHHH
Confidence 678899999999999999999999764 76 78999999832 2111 0 0111112111110
Q ss_pred ---cCC---------C--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEe
Q 008629 365 ---HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 412 (559)
Q Consensus 365 ---~~~---------~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 412 (559)
.+. . .++.+.++. .|++|.++... =+.-+|..++.....|.|++
T Consensus 105 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~DlVid~~Dn~--~~r~~in~~~~~~~iP~v~~ 162 (370)
T PRK05600 105 KEIQPDIRVNALRERLTAENAVELLNG--VDLVLDGSDSF--ATKFLVADAAEITGTPLVWG 162 (370)
T ss_pred HHHCCCCeeEEeeeecCHHHHHHHHhC--CCEEEECCCCH--HHHHHHHHHHHHcCCCEEEE
Confidence 010 1 135556654 78888776532 25556677777777888876
No 71
>PTZ00325 malate dehydrogenase; Provisional
Probab=91.67 E-value=1.1 Score=47.63 Aligned_cols=107 Identities=21% Similarity=0.287 Sum_probs=68.2
Q ss_pred cccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhh-ccccCCCCCHHHH
Q 008629 297 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNNLLDA 374 (559)
Q Consensus 297 l~d~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~f-A~~~~~~~~L~e~ 374 (559)
++-.||+|.|| |.-|..+|..|+. .|+ ...+.|+|.+ .. +.-.-+|.+....+ -+...+..+..++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~-----~~~-----~~elvL~Di~-~~-~g~a~Dl~~~~~~~~v~~~td~~~~~~~ 73 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQ-----NPH-----VSELSLYDIV-GA-PGVAADLSHIDTPAKVTGYADGELWEKA 73 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhc-----CCC-----CCEEEEEecC-CC-cccccchhhcCcCceEEEecCCCchHHH
Confidence 34569999999 9999999887752 244 3679999983 21 11111233211110 0111111234778
Q ss_pred hcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 375 VKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 375 V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
++. .|++|=+.+.+.. ..++++++|.+++.+.||+.-|||.
T Consensus 74 l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv 128 (321)
T PTZ00325 74 LRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128 (321)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 886 8988755555322 4568899999999999999999999
No 72
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.66 E-value=2.8 Score=43.06 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=26.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.||.|+|+|..|.+||..+... |. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5799999999999999988753 64 58888874
No 73
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=91.51 E-value=2.4 Score=47.22 Aligned_cols=123 Identities=16% Similarity=0.218 Sum_probs=68.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchh------------chhhccc--c
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF------------KKPWAHE--H 365 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~------------k~~fA~~--~ 365 (559)
.||.|+|+|..|.+||..++.+ |. +++++|.. .+..+.+... +.+++.. .
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~-------~V~v~D~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i 68 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI-------DVAVFDPH----PEAERIIGEVLANAERAYAMLTDAPLPPEGRL 68 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCC----HHHHHHHHHHHHHHHHHHhhhccchhhhhhce
Confidence 4799999999999999998763 64 57788873 1110111100 0001110 1
Q ss_pred CCCCCHHHHhcccCCcEEEeccCCCCC-CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc--cCCcEEEeeCCC
Q 008629 366 EPVNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW--SKGRAIFASGSP 442 (559)
Q Consensus 366 ~~~~~L~e~V~~vkPtvLIG~S~~~g~-Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~w--t~G~aifAsGSP 442 (559)
....++.|+++. .|++| .+..... +.+++.+.+.+..+.-.|+..|--. .+ +.+.-+. ..|+++.+ -|
T Consensus 69 ~~~~~~~ea~~~--aD~Vi-eavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsg--i~--~s~l~~~~~~~~r~~~~--hP 139 (495)
T PRK07531 69 TFCASLAEAVAG--ADWIQ-ESVPERLDLKRRVLAEIDAAARPDALIGSSTSG--FL--PSDLQEGMTHPERLFVA--HP 139 (495)
T ss_pred EeeCCHHHHhcC--CCEEE-EcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCC--CC--HHHHHhhcCCcceEEEE--ec
Confidence 123578899986 78888 4544432 4556666666655555666544322 22 3333232 24455544 58
Q ss_pred CCCce
Q 008629 443 FDPFE 447 (559)
Q Consensus 443 F~pv~ 447 (559)
|.|+.
T Consensus 140 ~nP~~ 144 (495)
T PRK07531 140 YNPVY 144 (495)
T ss_pred CCCcc
Confidence 88873
No 74
>PLN02928 oxidoreductase family protein
Probab=91.39 E-value=2 Score=45.91 Aligned_cols=139 Identities=16% Similarity=0.184 Sum_probs=87.1
Q ss_pred cchhHHHHHHHHHHHHH----------------hCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEE
Q 008629 276 QGTASVVLAGVVAALKL----------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 339 (559)
Q Consensus 276 QGTaaV~LAgll~Alr~----------------~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~l 339 (559)
+.+|--+++.+|+.+|- .+..|.+.++.|+|.|..|..+|+.+... |+ +++.
T Consensus 120 ~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~af-----G~-------~V~~ 187 (347)
T PLN02928 120 ASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPF-----GV-------KLLA 187 (347)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHHhhC-----CC-------EEEE
Confidence 34566677777776663 24579999999999999999999998643 65 5778
Q ss_pred EcccCccccCCcCCCchhc----hhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEE
Q 008629 340 VDSKGLIVSSRKDSLQHFK----KPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLIL 411 (559)
Q Consensus 340 vD~~GLi~~~R~~~l~~~k----~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIF 411 (559)
+|+.. .......+. .+ ..+........+|.|+++. .|+++-.- ...+.|+++.+..|. +..+|.
T Consensus 188 ~dr~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~ell~~--aDiVvl~lPlt~~T~~li~~~~l~~Mk---~ga~lI 259 (347)
T PLN02928 188 TRRSW--TSEPEDGLL-IPNGDVDDLVDEKGGHEDIYEFAGE--ADIVVLCCTLTKETAGIVNDEFLSSMK---KGALLV 259 (347)
T ss_pred ECCCC--Chhhhhhhc-cccccccccccccCcccCHHHHHhh--CCEEEECCCCChHhhcccCHHHHhcCC---CCeEEE
Confidence 88741 110000000 00 0111111134589999986 89998652 224799999999996 567777
Q ss_pred ecCCCCCCCCCCHHHHhc--ccCCcEEEe
Q 008629 412 ALSNPTSQSECTAEEAYT--WSKGRAIFA 438 (559)
Q Consensus 412 aLSNPt~~~EctpedA~~--wt~G~aifA 438 (559)
=.|. .++--|+|+- -..|+.-.|
T Consensus 260 NvaR----G~lVde~AL~~AL~~g~i~gA 284 (347)
T PLN02928 260 NIAR----GGLLDYDAVLAALESGHLGGL 284 (347)
T ss_pred ECCC----ccccCHHHHHHHHHcCCeeEE
Confidence 6664 4555554442 135665443
No 75
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=91.32 E-value=1.4 Score=43.93 Aligned_cols=103 Identities=20% Similarity=0.294 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhCC---------CcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccC
Q 008629 280 SVVLAGVVAALKLIGG---------TLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS 349 (559)
Q Consensus 280 aV~LAgll~Alr~~g~---------~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~ 349 (559)
-+|-.|++-=++..+. +++.++++++|-+. -|.-+|.||.. .| ..++++|++|.....
T Consensus 34 PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~-----~~-------AtVti~~~~~~~~~~ 101 (197)
T cd01079 34 PCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLAN-----DG-------ARVYSVDINGIQVFT 101 (197)
T ss_pred CCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEEecCcccccc
Confidence 4566667776676644 89999999999875 56667666654 35 358899999988866
Q ss_pred CcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCC-CCHHHHH
Q 008629 350 RKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIE 399 (559)
Q Consensus 350 R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~-Ft~evv~ 399 (559)
+...+.+.+.+. .....+|.|.+++ +|++|-..+.++. ++.|+|+
T Consensus 102 ~~~~~~hs~t~~---~~~~~~l~~~~~~--ADIVIsAvG~~~~~i~~d~ik 147 (197)
T cd01079 102 RGESIRHEKHHV---TDEEAMTLDCLSQ--SDVVITGVPSPNYKVPTELLK 147 (197)
T ss_pred cccccccccccc---cchhhHHHHHhhh--CCEEEEccCCCCCccCHHHcC
Confidence 643232111100 0111248899986 9999999999997 8999997
No 76
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.27 E-value=0.55 Score=48.59 Aligned_cols=58 Identities=29% Similarity=0.309 Sum_probs=42.1
Q ss_pred CCCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 267 THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 267 ~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+..=+|-| ..|++.+++..+..+++.+++|+|||-+|-+|+..+.. .|. ++|+++|+.
T Consensus 102 ~l~G~NTD--------~~G~~~~l~~~~~~~~~k~vlI~GAGGagrAia~~La~-----~G~------~~V~I~~R~ 159 (289)
T PRK12548 102 KLTGHITD--------GLGFVRNLREHGVDVKGKKLTVIGAGGAATAIQVQCAL-----DGA------KEITIFNIK 159 (289)
T ss_pred EEEEEecC--------HHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 34556777 45677788877778889999999998776666655543 365 679999874
No 77
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=91.13 E-value=0.44 Score=49.50 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=42.2
Q ss_pred CCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 268 HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 268 ~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+=+|-|- .|++.+++..+..+++.+++++|||-||-+|+-.|.+ .|. ++|+++|+.
T Consensus 104 l~G~NTD~--------~Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 160 (283)
T PRK14027 104 TTGHNTDV--------SGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVT-----HGV------QKLQVADLD 160 (283)
T ss_pred EEEEcCCH--------HHHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEcCC
Confidence 45566664 3566777654556888999999999999888877764 365 689999884
No 78
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=91.08 E-value=0.81 Score=48.34 Aligned_cols=125 Identities=18% Similarity=0.271 Sum_probs=73.7
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc---cCCCCCHHHHh
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLLDAV 375 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~---~~~~~~L~e~V 375 (559)
-.||.|+|||..|.++|.+++. .|+ ..+.|+|.+-=....+.-++.+. ..+... -....++ +++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~-----~gl------~~i~LvDi~~~~~~~~~ld~~~~-~~~~~~~~~I~~~~d~-~~l 72 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVL-----KNL------GDVVLFDIVKNIPQGKALDISHS-NVIAGSNSKVIGTNNY-EDI 72 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----CCC------CeEEEEeCCCchhhHHHHHHHhh-hhccCCCeEEEECCCH-HHh
Confidence 3699999999999999987654 376 23999997532211111011111 111111 1112456 566
Q ss_pred cccCCcEEEeccCCCCCC-------------------CHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC--Cc
Q 008629 376 KVIKPTILIGSSGVGRTF-------------------TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GR 434 (559)
Q Consensus 376 ~~vkPtvLIG~S~~~g~F-------------------t~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~--G~ 434 (559)
+. .|++|=+.+.++.- -.++++.|.+++..-+++--|||.+ .....+++.++ -+
T Consensus 73 ~~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~d---i~t~~~~~~sg~p~~ 147 (321)
T PTZ00082 73 AG--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLD---VMVKLLQEHSGLPKN 147 (321)
T ss_pred CC--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH---HHHHHHHHhcCCChh
Confidence 64 89998666554321 2477888889998879999999982 22333444442 13
Q ss_pred EEEeeCC
Q 008629 435 AIFASGS 441 (559)
Q Consensus 435 aifAsGS 441 (559)
-+|++|+
T Consensus 148 rviGlgt 154 (321)
T PTZ00082 148 KVCGMAG 154 (321)
T ss_pred hEEEecC
Confidence 4666663
No 79
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=90.88 E-value=0.5 Score=49.69 Aligned_cols=126 Identities=14% Similarity=0.265 Sum_probs=75.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc-CCCCCHHHHhccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVI 378 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~-~~~~~L~e~V~~v 378 (559)
.||.|+|||..|..+|-+|+. .|+ ...|.|+|.+-=..++-.-+|.+.. +|-+.. -..++. +..+.
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~-----~~~-----~~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~-~~~~~- 73 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVN-----QGI-----ADELVIIDINKEKAEGDAMDLSHAV-PFTSPTKIYAGDY-SDCKD- 73 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCchhHHHHHHHHhhc-cccCCeEEEeCCH-HHhCC-
Confidence 599999999999999988764 366 3679999974111111111133222 221110 011344 44664
Q ss_pred CCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--CCcEEEeeCCC
Q 008629 379 KPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGSP 442 (559)
Q Consensus 379 kPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt--~G~aifAsGSP 442 (559)
.|++|=+.+.+.. +=+++++.|.+++...+|+-.|||. ++...-+++++ .-+-+|.+|.-
T Consensus 74 -adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~---d~~~~~~~k~sg~p~~~viG~gt~ 149 (315)
T PRK00066 74 -ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPV---DILTYATWKLSGFPKERVIGSGTS 149 (315)
T ss_pred -CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcH---HHHHHHHHHHhCCCHHHEeecCch
Confidence 8999876665421 1156788888999999999999998 33444555554 22336666543
No 80
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=90.80 E-value=0.36 Score=51.72 Aligned_cols=38 Identities=32% Similarity=0.448 Sum_probs=33.0
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+|++.||+++|+|..|..||..|+.+ |+ ++|.++|.+
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~-----Gv------g~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAA-----GV------GTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 367889999999999999999999764 76 789999987
No 81
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=90.64 E-value=2.2 Score=46.39 Aligned_cols=116 Identities=15% Similarity=0.185 Sum_probs=82.4
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
..|=-+++.+++..|..|..|.+.++.|+|.|..|-.+|+.+... |+ ++..+|.. +.+ ..
T Consensus 94 aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~-----G~-------~V~~~dp~------~~~--~~ 153 (378)
T PRK15438 94 AVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEAL-----GI-------KTLLCDPP------RAD--RG 153 (378)
T ss_pred HHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCc------ccc--cc
Confidence 345567888898888889999999999999999999999998653 75 57778852 111 00
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEe---ccC-----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHh
Q 008629 357 FKKPWAHEHEPVNNLLDAVKVIKPTILIG---SSG-----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY 428 (559)
Q Consensus 357 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG---~S~-----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~ 428 (559)
......+|.|+++. .|+++= ++. .-+.|+++.++.|. +..|+.=.|. -+.-=|+|+
T Consensus 154 -------~~~~~~~L~ell~~--sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk---~gailIN~aR----G~vVDe~AL 217 (378)
T PRK15438 154 -------DEGDFRSLDELVQE--ADILTFHTPLFKDGPYKTLHLADEKLIRSLK---PGAILINACR----GAVVDNTAL 217 (378)
T ss_pred -------cccccCCHHHHHhh--CCEEEEeCCCCCCcccccccccCHHHHhcCC---CCcEEEECCC----chhcCHHHH
Confidence 00123579999875 898872 222 24689999999997 6778886554 555555554
No 82
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.33 E-value=0.58 Score=47.90 Aligned_cols=32 Identities=38% Similarity=0.576 Sum_probs=26.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+||.|+|+|..|.+||..+... | .+++++|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G-------~~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----G-------FQTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----C-------CcEEEEeCC
Confidence 4799999999999999988753 5 358888874
No 83
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.32 E-value=0.39 Score=51.10 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=34.5
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
.+|++.||+|+|+|..|..+|+.|+.+ |+ ++|.++|.+=
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~a-----Gv------g~i~lvD~D~ 58 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRA-----GI------GKLTIADRDY 58 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCc
Confidence 478899999999999999999999875 76 7899999983
No 84
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=90.14 E-value=0.61 Score=50.45 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=33.7
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
++|++.||+++|+|.-|.-+|..|+.+ |+ ++|.++|.+
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~-----Gv------g~i~lvD~D 75 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAA-----GV------GTLGIVEFD 75 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 568899999999999999999999864 87 789999987
No 85
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.11 E-value=1.3 Score=46.67 Aligned_cols=126 Identities=21% Similarity=0.339 Sum_probs=75.6
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc---CCCCCHHHH
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 374 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~---~~~~~L~e~ 374 (559)
+..||.|+|||+.|.++|.+++. .|+ ..+.|+|.+-=......-++.+. ..+.... ....+++ +
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~-----~~~------~~l~L~Di~~~~~~g~~lDl~~~-~~~~~~~~~i~~~~d~~-~ 70 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQ-----KNL------GDVVLYDVIKGVPQGKALDLKHF-STLVGSNINILGTNNYE-D 70 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHH-----CCC------CeEEEEECCCccchhHHHHHhhh-ccccCCCeEEEeCCCHH-H
Confidence 34599999999999999987764 365 24999997521111110012211 1111110 1124565 5
Q ss_pred hcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEEe
Q 008629 375 VKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFA 438 (559)
Q Consensus 375 V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~--G~aifA 438 (559)
++. .|++|=+.+.+.. +=+++.+.|.++|+.-+++=.|||.. .....++++++ =.-+|+
T Consensus 71 l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~d---i~t~~~~~~s~~p~~rviG 145 (319)
T PTZ00117 71 IKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLD---CMVKVFQEKSGIPSNKICG 145 (319)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHH---HHHHHHHHhhCCCcccEEE
Confidence 665 8988876655431 23488999999999998888899982 23445555542 134676
Q ss_pred eCC
Q 008629 439 SGS 441 (559)
Q Consensus 439 sGS 441 (559)
+|+
T Consensus 146 ~gt 148 (319)
T PTZ00117 146 MAG 148 (319)
T ss_pred ecc
Confidence 664
No 86
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.09 E-value=1.7 Score=45.89 Aligned_cols=93 Identities=14% Similarity=0.282 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 278 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 278 TaaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
-.-+|-.|++.=++-.|.+++..+|+|+|.| ..|..+|.+|... |. .+++++++ .
T Consensus 138 ~~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~-----ga-------tVtv~~~~-------t----- 193 (301)
T PRK14194 138 LTPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQA-----HC-------SVTVVHSR-------S----- 193 (301)
T ss_pred CCCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHC-----CC-------EEEEECCC-------C-----
Confidence 3466788889999999999999999999996 9999999999763 53 46666543 0
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 008629 357 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 414 (559)
Q Consensus 357 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 414 (559)
.++.|++++ .|++|=+.+.++.+++++++ +.-||.=+|
T Consensus 194 ------------~~l~e~~~~--ADIVIsavg~~~~v~~~~ik------~GaiVIDvg 231 (301)
T PRK14194 194 ------------TDAKALCRQ--ADIVVAAVGRPRLIDADWLK------PGAVVIDVG 231 (301)
T ss_pred ------------CCHHHHHhc--CCEEEEecCChhcccHhhcc------CCcEEEEec
Confidence 168888986 99999999988888988854 556776666
No 87
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=90.07 E-value=0.62 Score=51.17 Aligned_cols=125 Identities=19% Similarity=0.294 Sum_probs=73.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhc-CCChhhhcccEEEEcccCccccCCcCCCchhchhhccc-cCC-----CCCHH
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQT-KAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 372 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~-G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~-~~~-----~~~L~ 372 (559)
.||+|+||||+ -.-.|+..+.+.. .++ .+.|||+|-+ .+|-+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l~----~~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~ 69 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEELP----ISEVTLYDID----EERLDIILTIAKRYVEEVGADIKFEKTMDLE 69 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhCC----CCEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 38999999996 3434444443322 342 4789999975 44422122222223222 112 25788
Q ss_pred HHhcccCCcEEEeccCC--------------------------CCCCC--------HHHHHHHHcCCCCcEEEecCCCCC
Q 008629 373 DAVKVIKPTILIGSSGV--------------------------GRTFT--------KEVIEAMASFNEKPLILALSNPTS 418 (559)
Q Consensus 373 e~V~~vkPtvLIG~S~~--------------------------~g~Ft--------~evv~~Ma~~~erPIIFaLSNPt~ 418 (559)
||++. +|.+|-.-.+ ||.|. .++++.|.++|+.-+|+-.|||.
T Consensus 70 ~Al~g--ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~- 146 (425)
T cd05197 70 DAIID--ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPA- 146 (425)
T ss_pred HHhCC--CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChH-
Confidence 88886 7776644333 34333 38899999999999999999998
Q ss_pred CCCCCHHHHhcccCCcEEEeeC
Q 008629 419 QSECTAEEAYTWSKGRAIFASG 440 (559)
Q Consensus 419 ~~EctpedA~~wt~G~aifAsG 440 (559)
.-+| +-+++++...-+|.+|
T Consensus 147 -di~t-~a~~~~~p~~rviG~c 166 (425)
T cd05197 147 -GEVT-EAVRRYVPPEKAVGLC 166 (425)
T ss_pred -HHHH-HHHHHhCCCCcEEEEC
Confidence 2222 2333445333355444
No 88
>PRK15076 alpha-galactosidase; Provisional
Probab=90.02 E-value=0.7 Score=50.83 Aligned_cols=129 Identities=16% Similarity=0.197 Sum_probs=72.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcC---CC-chhchhhccc--cCCCCCHHH
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD---SL-QHFKKPWAHE--HEPVNNLLD 373 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~---~l-~~~k~~fA~~--~~~~~~L~e 373 (559)
.||.|+|||+.|. +..++..+....++ +-..++|+|.+- +|.+ .+ .......... -.-..++.+
T Consensus 2 ~KIaIIGaGsvg~--~~~~~~~i~~~~~l----~~~evvLvDid~----er~~~~~~l~~~~~~~~~~~~~i~~ttD~~e 71 (431)
T PRK15076 2 PKITFIGAGSTVF--TKNLLGDILSVPAL----RDAEIALMDIDP----ERLEESEIVARKLAESLGASAKITATTDRRE 71 (431)
T ss_pred cEEEEECCCHHHh--HHHHHHHHhhCccC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence 5899999999853 33343333221234 235799999752 2211 01 1110011000 011247888
Q ss_pred HhcccCCcEEEeccCCCCCC-------------------------------------CHHHHHHHHcCCCCcEEEecCCC
Q 008629 374 AVKVIKPTILIGSSGVGRTF-------------------------------------TKEVIEAMASFNEKPLILALSNP 416 (559)
Q Consensus 374 ~V~~vkPtvLIG~S~~~g~F-------------------------------------t~evv~~Ma~~~erPIIFaLSNP 416 (559)
+++. .|++|=..++||.- =.++++.|.++|+..+|+-.|||
T Consensus 72 al~d--ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP 149 (431)
T PRK15076 72 ALQG--ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNP 149 (431)
T ss_pred HhCC--CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCCh
Confidence 8876 78777555554311 14778888899999999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEeeC-CCCC
Q 008629 417 TSQSECTAEEAYTWSKGRAIFASG-SPFD 444 (559)
Q Consensus 417 t~~~EctpedA~~wt~G~aifAsG-SPF~ 444 (559)
.. +-.+-++.++ ..-+|.+| +|+.
T Consensus 150 ~d---ivt~~~~~~~-~~rviG~c~~~~~ 174 (431)
T PRK15076 150 MA---MNTWAMNRYP-GIKTVGLCHSVQG 174 (431)
T ss_pred HH---HHHHHHhcCC-CCCEEEECCCHHH
Confidence 82 1122223453 34577777 6643
No 89
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=90.02 E-value=1.3 Score=46.68 Aligned_cols=115 Identities=15% Similarity=0.148 Sum_probs=66.9
Q ss_pred HHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc
Q 008629 285 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 364 (559)
Q Consensus 285 gll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~ 364 (559)
|.+++...... ...+++|+|+|..|..++..+... .++ ++++++++. ..| ...+...+.+.
T Consensus 117 ~~laa~~la~~--~~~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~~---a~~~a~~~~~~ 177 (326)
T TIGR02992 117 GAVAARHLARE--DSSVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SAK---AEALALQLSSL 177 (326)
T ss_pred HHHHHHHhCCC--CCcEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH---HHHHHHHHHhh
Confidence 44444444322 346899999999998888877543 254 678888773 222 22222222111
Q ss_pred ----cCCCCCHHHHhcccCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHH
Q 008629 365 ----HEPVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEE 426 (559)
Q Consensus 365 ----~~~~~~L~e~V~~vkPtvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~Ectped 426 (559)
.....++.++++. .|++|-++.. ...|+.++++ +.-.|.++..-+ .+-|+.++-
T Consensus 178 ~g~~v~~~~~~~~av~~--aDiVvtaT~s~~p~i~~~~l~------~g~~i~~vg~~~p~~rEld~~~ 237 (326)
T TIGR02992 178 LGIDVTAATDPRAAMSG--ADIIVTTTPSETPILHAEWLE------PGQHVTAMGSDAEHKNEIDPAV 237 (326)
T ss_pred cCceEEEeCCHHHHhcc--CCEEEEecCCCCcEecHHHcC------CCcEEEeeCCCCCCceecCHHH
Confidence 1123678999975 9999977643 2356766665 222444554322 256777755
No 90
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.02 E-value=1.2 Score=46.77 Aligned_cols=84 Identities=20% Similarity=0.325 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcChH-HHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 278 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGEA-GTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 278 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGsA-giGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
-.-+|-.|++.-++-.|.+++..+++++|.|.- |.-+|.+|.. .|. .+.+++++
T Consensus 137 ~~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~a-------tVt~~hs~------------- 191 (285)
T PRK14189 137 FRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQ-----AGA-------TVTICHSK------------- 191 (285)
T ss_pred CcCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEecCC-------------
Confidence 346788889999999999999999999999998 9999999864 253 35555432
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 357 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 357 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
.++|.+.+++ +|++|-..+.++.|+.++++
T Consensus 192 -----------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik 221 (285)
T PRK14189 192 -----------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVK 221 (285)
T ss_pred -----------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357788885 99999999999999998886
No 91
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.94 E-value=0.52 Score=42.85 Aligned_cols=35 Identities=37% Similarity=0.575 Sum_probs=30.8
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
++.||+++|+|+-|.-+|+.|+.. |+ ++|.++|.+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~-----Gv------~~i~lvD~d 35 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARS-----GV------GKITLVDDD 35 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHH-----TT------SEEEEEESS
T ss_pred CCCEEEEECcCHHHHHHHHHHHHh-----CC------CceeecCCc
Confidence 478999999999999999999875 76 789999997
No 92
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=89.93 E-value=0.88 Score=49.76 Aligned_cols=126 Identities=17% Similarity=0.237 Sum_probs=71.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc------CCCCCHHHH
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH------EPVNNLLDA 374 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~------~~~~~L~e~ 374 (559)
||.|+|||+.|.+.+- +..+.....+ +-..++|+|.+- +|.+.+...-..++... ....++.++
T Consensus 2 KIaIIGaGs~G~a~a~--~~~i~~~~~~----~g~eV~L~Did~----e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~ea 71 (423)
T cd05297 2 KIAFIGAGSVVFTKNL--VGDLLKTPEL----SGSTIALMDIDE----ERLETVEILAKKIVEELGAPLKIEATTDRREA 71 (423)
T ss_pred eEEEECCChHHhHHHH--HHHHhcCCCC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 7999999999887653 1111111111 235799999752 22111111111111111 113578899
Q ss_pred hcccCCcEEEeccCCC---------------CCCC---------------------HHHHHHHHcCCCCcEEEecCCCCC
Q 008629 375 VKVIKPTILIGSSGVG---------------RTFT---------------------KEVIEAMASFNEKPLILALSNPTS 418 (559)
Q Consensus 375 V~~vkPtvLIG~S~~~---------------g~Ft---------------------~evv~~Ma~~~erPIIFaLSNPt~ 418 (559)
++. .|++|=.-..+ |+|. .++.+.|.++|++.+++=.|||.
T Consensus 72 l~~--AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv- 148 (423)
T cd05297 72 LDG--ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPM- 148 (423)
T ss_pred hcC--CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChH-
Confidence 885 88777544322 1221 27777778888999999999998
Q ss_pred CCCCCHHHHhcccCCcEEEeeC-CC
Q 008629 419 QSECTAEEAYTWSKGRAIFASG-SP 442 (559)
Q Consensus 419 ~~EctpedA~~wt~G~aifAsG-SP 442 (559)
..+| +-+++.++ .-++.+| +|
T Consensus 149 -~i~t-~~~~k~~~-~rviG~c~~~ 170 (423)
T cd05297 149 -AELT-WALNRYTP-IKTVGLCHGV 170 (423)
T ss_pred -HHHH-HHHHHhCC-CCEEEECCcH
Confidence 3222 23346665 4567777 44
No 93
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=89.92 E-value=0.72 Score=47.33 Aligned_cols=87 Identities=23% Similarity=0.344 Sum_probs=53.5
Q ss_pred HHHHHHHHH-hCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhc
Q 008629 284 AGVVAALKL-IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 362 (559)
Q Consensus 284 Agll~Alr~-~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA 362 (559)
.|++++++. .+..+++.+++++|+|.+|-+++..+.. .|+ ++++++++. .++ .......+.
T Consensus 107 ~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~-----~g~------~~V~v~~R~----~~~---a~~l~~~~~ 168 (278)
T PRK00258 107 IGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLD-----LGV------AEITIVNRT----VER---AEELAKLFG 168 (278)
T ss_pred HHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEEeCC----HHH---HHHHHHHhh
Confidence 356667764 5678999999999999888888877764 364 579999885 122 222222221
Q ss_pred ccc-CCC-CCHHHHhcccCCcEEEeccCCC
Q 008629 363 HEH-EPV-NNLLDAVKVIKPTILIGSSGVG 390 (559)
Q Consensus 363 ~~~-~~~-~~L~e~V~~vkPtvLIG~S~~~ 390 (559)
... -.. .++.+.+. +.|++|-++..+
T Consensus 169 ~~~~~~~~~~~~~~~~--~~DivInaTp~g 196 (278)
T PRK00258 169 ALGKAELDLELQEELA--DFDLIINATSAG 196 (278)
T ss_pred hccceeecccchhccc--cCCEEEECCcCC
Confidence 110 011 12334454 489999888755
No 94
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.84 E-value=2.5 Score=43.85 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=26.5
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
..||.|+|+|..|.++|..+... | .+++++|+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-----G-------~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-----G-------HRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 35899999999999999999764 5 357777764
No 95
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.72 E-value=1.1 Score=46.08 Aligned_cols=32 Identities=34% Similarity=0.626 Sum_probs=26.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+||.|+|+|..|.+||..+... |. +++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEECC
Confidence 5799999999999999988653 53 58888863
No 96
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.68 E-value=1.5 Score=46.02 Aligned_cols=84 Identities=17% Similarity=0.287 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 278 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 278 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
-.-+|-.|++..++-.+.+|+..+++++|.|. -|--+|.+|.. .|. .+.+++++
T Consensus 143 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~a-------tVtv~hs~------------- 197 (287)
T PRK14176 143 LVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLN-----RNA-------TVSVCHVF------------- 197 (287)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CCC-------EEEEEecc-------------
Confidence 45678899999999999999999999999998 89999988864 243 45666642
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 357 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 357 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
.++|.+.+++ +|++|-..+.++.+++++|+
T Consensus 198 -----------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk 227 (287)
T PRK14176 198 -----------TDDLKKYTLD--ADILVVATGVKHLIKADMVK 227 (287)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCccccCHHHcC
Confidence 1257777875 99999999999999999886
No 97
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=89.56 E-value=8.2 Score=42.59 Aligned_cols=174 Identities=24% Similarity=0.251 Sum_probs=115.8
Q ss_pred chhHhHHHHHHHHHHhhCCCeeeeeccCCCCc--HHHHHHHHcCC-----CCee----------ecCCcchhHHHHHHHH
Q 008629 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHN--AFELLAKYGTT-----HLVF----------NDDIQGTASVVLAGVV 287 (559)
Q Consensus 225 ~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~--Af~lL~ryr~~-----~~~F----------nDDiQGTaaV~LAgll 287 (559)
|-..+...|++++.+.-||+.-|-=+|++..- =--+.+.|+.- .++| .+----||==+.-+.-
T Consensus 116 E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv~~~~~ 195 (411)
T COG0334 116 ELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYGVFYAIR 195 (411)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCcccceehHHHHH
Confidence 67788899999999999999999999998632 11256777531 2222 1122223322222333
Q ss_pred HHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchh-----hc
Q 008629 288 AALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP-----WA 362 (559)
Q Consensus 288 ~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~-----fA 362 (559)
.|++..|..|+..||.|-|-|.+|.-.|+.+.+. |. |=+-+-|++|-|++.. .|+..+.. +.
T Consensus 196 ~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~-----GA------kvva~sds~g~i~~~~--Gld~~~l~~~~~~~~ 262 (411)
T COG0334 196 EALKALGDDLEGARVAVQGFGNVGQYAAEKLHEL-----GA------KVVAVSDSKGGIYDED--GLDVEALLELKERRG 262 (411)
T ss_pred HHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHc-----CC------EEEEEEcCCCceecCC--CCCHHHHHHHhhhhh
Confidence 7888888889999999999999999998888653 63 5677789999888763 45532222 11
Q ss_pred cc-----cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCC
Q 008629 363 HE-----HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTS 418 (559)
Q Consensus 363 ~~-----~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~ 418 (559)
+- .+.+.+ |.+-.+..||||=+.. ++..|++-.+.+.. + +|.=-+| |++
T Consensus 263 ~v~~~~ga~~i~~--~e~~~~~cDIl~PcA~-~n~I~~~na~~l~a---k-~V~EgAN~P~t 317 (411)
T COG0334 263 SVAEYAGAEYITN--EELLEVDCDILIPCAL-ENVITEDNADQLKA---K-IVVEGANGPTT 317 (411)
T ss_pred hHHhhcCceEccc--cccccccCcEEccccc-ccccchhhHHHhhh---c-EEEeccCCCCC
Confidence 10 111112 3344457899996665 56899998888863 2 8888888 774
No 98
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=89.48 E-value=1.2 Score=42.72 Aligned_cols=115 Identities=13% Similarity=0.090 Sum_probs=73.5
Q ss_pred HHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCC
Q 008629 290 LKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVN 369 (559)
Q Consensus 290 lr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~ 369 (559)
....+..|.++++.|+|.|..|..+|+++... |+ +++.+|+..--. + .+....-...
T Consensus 27 ~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~~~~--------~---~~~~~~~~~~ 83 (178)
T PF02826_consen 27 ERFPGRELRGKTVGIIGYGRIGRAVARRLKAF-----GM-------RVIGYDRSPKPE--------E---GADEFGVEYV 83 (178)
T ss_dssp TTTTBS-STTSEEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSCHHH--------H---HHHHTTEEES
T ss_pred cCCCccccCCCEEEEEEEcCCcCeEeeeeecC-----Cc-------eeEEecccCChh--------h---hcccccceee
Confidence 45667889999999999999999999999753 64 688888752210 0 1111111235
Q ss_pred CHHHHhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc--cCCcEE
Q 008629 370 NLLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW--SKGRAI 436 (559)
Q Consensus 370 ~L~e~V~~vkPtvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~w--t~G~ai 436 (559)
+|.|.++. .|+++=.-- .-+.|+++.++.|. +.-++.-.|. .++--|+|+-. .+|+.-
T Consensus 84 ~l~ell~~--aDiv~~~~plt~~T~~li~~~~l~~mk---~ga~lvN~aR----G~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 84 SLDELLAQ--ADIVSLHLPLTPETRGLINAEFLAKMK---PGAVLVNVAR----GELVDEDALLDALESGKIA 147 (178)
T ss_dssp SHHHHHHH---SEEEE-SSSSTTTTTSBSHHHHHTST---TTEEEEESSS----GGGB-HHHHHHHHHTTSEE
T ss_pred ehhhhcch--hhhhhhhhccccccceeeeeeeeeccc---cceEEEeccc----hhhhhhhHHHHHHhhccCc
Confidence 79999986 888874421 24799999999997 5667775554 55555554422 356554
No 99
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=89.48 E-value=2.1 Score=48.64 Aligned_cols=163 Identities=22% Similarity=0.233 Sum_probs=105.1
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCcc--ccCCcCCCchhchhhccccCCCCCHHHH
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDA 374 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi--~~~R~~~l~~~k~~fA~~~~~~~~L~e~ 374 (559)
..+--++|+|.|..|+|||.-+.. .|+ ++.|++++-+- |.+|..+|-+--.+|+... +.+=..|+
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~-----RGl-------~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~-e~~lvrEa 76 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAG-----RGL-------KVALVEKGDLASGTSSRSTKLIHGGLRYLEQY-EFSLVREA 76 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHh-----CCC-------eEEEEecCcccCcccCccccCccchhhhhhhc-chHHHHHH
Confidence 355679999999999999998865 487 57889988775 4555555665556666431 22213455
Q ss_pred hcccCCcEEEeccCCCCCCCHHHHHHHHcCC--CCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCceeCCee
Q 008629 375 VKVIKPTILIGSSGVGRTFTKEVIEAMASFN--EKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKV 452 (559)
Q Consensus 375 V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~--erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~pv~~~G~~ 452 (559)
+.. .+++..+|-|+ +.|.+||..+=+
T Consensus 77 l~E-----------------r~vL~~~APH~v~p~~~~lp~~~~~----------------------------------- 104 (532)
T COG0578 77 LAE-----------------REVLLRIAPHLVEPLPFLLPHLPGL----------------------------------- 104 (532)
T ss_pred HHH-----------------HHHHHHhCccccccCcCeEeccCCc-----------------------------------
Confidence 542 47777787665 444566554420
Q ss_pred eCccCccccccchhhHHHHHHhCC-ccc--CHHHHHHHHHHHHhccCccccCCCcccCCCCCccchHHHHHHHHHHHHHH
Q 008629 453 FVPGQANNAYIFPGFGLGLVISGA-IRV--HDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYE 529 (559)
Q Consensus 453 ~~p~Q~NN~yiFPGlglG~l~~~a-~~I--td~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~aVa~~A~~ 529 (559)
---.+++.|+.+...+++. +.. +..+..+++..+.-.+.++.+..+..||.-.- .+ .+...++++.|.+
T Consensus 105 -----~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~v-dd--aRLv~~~a~~A~~ 176 (532)
T COG0578 105 -----RDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVV-DD--ARLVAANARDAAE 176 (532)
T ss_pred -----ccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEcccee-ch--HHHHHHHHHHHHh
Confidence 0125778899999999993 222 22233335666666666666666888987653 32 2566788888888
Q ss_pred hCC
Q 008629 530 LGV 532 (559)
Q Consensus 530 ~Gv 532 (559)
.|-
T Consensus 177 ~Ga 179 (532)
T COG0578 177 HGA 179 (532)
T ss_pred ccc
Confidence 883
No 100
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=89.32 E-value=0.56 Score=44.02 Aligned_cols=85 Identities=21% Similarity=0.336 Sum_probs=50.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhch--hhccc---cCC---CCCHH
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK--PWAHE---HEP---VNNLL 372 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~--~fA~~---~~~---~~~L~ 372 (559)
||.|+|||+.|+.+|..+.. .| .++.|.+++.-..+ .++..+. .|... ... ..+|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~-----~g-------~~V~l~~~~~~~~~----~i~~~~~n~~~~~~~~l~~~i~~t~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD-----NG-------HEVTLWGRDEEQIE----EINETRQNPKYLPGIKLPENIKATTDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----CT-------EEEEEETSCHHHHH----HHHHHTSETTTSTTSBEETTEEEESSHH
T ss_pred CEEEECcCHHHHHHHHHHHH-----cC-------CEEEEEeccHHHHH----HHHHhCCCCCCCCCcccCcccccccCHH
Confidence 78999999999999998876 35 56777776531111 1211111 11110 111 25799
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC
Q 008629 373 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN 405 (559)
Q Consensus 373 e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~ 405 (559)
++++. +|++| +.. |-.+-+++++.++.+-
T Consensus 65 ~a~~~--ad~Ii-iav-Ps~~~~~~~~~l~~~l 93 (157)
T PF01210_consen 65 EALED--ADIII-IAV-PSQAHREVLEQLAPYL 93 (157)
T ss_dssp HHHTT---SEEE-E-S--GGGHHHHHHHHTTTS
T ss_pred HHhCc--ccEEE-ecc-cHHHHHHHHHHHhhcc
Confidence 99986 77665 333 3245789999998744
No 101
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.31 E-value=1.1 Score=46.84 Aligned_cols=85 Identities=21% Similarity=0.370 Sum_probs=68.1
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+-.-+|-.|++.=++-.+.+|+..+++++|-+ .-|--+|.++.. .| ..+..++++
T Consensus 130 ~~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~-----~~-------atVtv~hs~------------ 185 (279)
T PRK14178 130 GFAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLN-----AD-------ATVTICHSK------------ 185 (279)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHh-----CC-------CeeEEEecC------------
Confidence 34567888899999999999999999999999 788888777754 24 345666543
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
.++|.+.++. +|++|+.-+.++.+|+++|+
T Consensus 186 ------------t~~L~~~~~~--ADIvI~Avgk~~lv~~~~vk 215 (279)
T PRK14178 186 ------------TENLKAELRQ--ADILVSAAGKAGFITPDMVK 215 (279)
T ss_pred ------------hhHHHHHHhh--CCEEEECCCcccccCHHHcC
Confidence 0368888986 99999999999999999984
No 102
>PRK14851 hypothetical protein; Provisional
Probab=89.26 E-value=1.4 Score=51.36 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=78.9
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccC--Cc-----CCCchhchhhccc---
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS--RK-----DSLQHFKKPWAHE--- 364 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~--R~-----~~l~~~k~~fA~~--- 364 (559)
++|++.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|-+=+-..+ |. +++-..|..-+.+
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~-----GV------G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~ 107 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRT-----GI------GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQAL 107 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHh-----CC------CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHH
Confidence 578899999999999999999988875 87 789999987332211 10 1121122222211
Q ss_pred --c---------CCC--CCHHHHhcccCCcEEEeccCCCCCC-CHHHHHHHHcCCCCcEEEecC----------CCCCCC
Q 008629 365 --H---------EPV--NNLLDAVKVIKPTILIGSSGVGRTF-TKEVIEAMASFNEKPLILALS----------NPTSQS 420 (559)
Q Consensus 365 --~---------~~~--~~L~e~V~~vkPtvLIG~S~~~g~F-t~evv~~Ma~~~erPIIFaLS----------NPt~~~ 420 (559)
. ..+ .++.+.++. .|++|-+..-. .| ++..|...+..+..|+|++-. +|.
T Consensus 108 ~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~D~~-~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~--- 181 (679)
T PRK14851 108 SINPFLEITPFPAGINADNMDAFLDG--VDVVLDGLDFF-QFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQ--- 181 (679)
T ss_pred HhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECCCCC-cHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCC---
Confidence 0 111 246677764 89998555321 12 344677778888999998754 665
Q ss_pred CCCHHHHhcccCC
Q 008629 421 ECTAEEAYTWSKG 433 (559)
Q Consensus 421 EctpedA~~wt~G 433 (559)
....++.|.+.++
T Consensus 182 ~~~~~~~~~~~~~ 194 (679)
T PRK14851 182 GMGFDDYFNIGGK 194 (679)
T ss_pred CCCHhHhccCCCC
Confidence 5778888888777
No 103
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=89.22 E-value=0.5 Score=50.30 Aligned_cols=38 Identities=34% Similarity=0.534 Sum_probs=33.5
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+|++.||+|+|+|.-|.-+|..|+.+ |+ .+|.++|.+
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~a-----Gv------g~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRA-----GV------GKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 568899999999999999999988764 76 789999996
No 104
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=88.92 E-value=0.88 Score=47.59 Aligned_cols=48 Identities=38% Similarity=0.513 Sum_probs=38.5
Q ss_pred HHHHHHHHhC--CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 285 GVVAALKLIG--GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 285 gll~Alr~~g--~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
|+..+++-.+ ...+.+++|++|||-|+.+|+-.|.+. |. ++|+++++.
T Consensus 110 G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-----g~------~~i~V~NRt 159 (283)
T COG0169 110 GFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-----GA------KRITVVNRT 159 (283)
T ss_pred HHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEEeCC
Confidence 5677777755 456689999999999999998888763 75 789999883
No 105
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.83 E-value=1.8 Score=45.79 Aligned_cols=110 Identities=21% Similarity=0.162 Sum_probs=68.7
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCc--cccCCcCCCchhchhhccccCCCCCHHHHhcc
Q 008629 301 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 377 (559)
Q Consensus 301 riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL--i~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~ 377 (559)
||.|.|| |..|..+|-.|+. .|+-.|+-...+.|+|.+.- ..+...-+|.+..-++.+...-..+..+.++.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~ 76 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD 76 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC
Confidence 7999999 9999999987764 36532223346999998641 11111112333322332211111457788886
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCC-CCcEEEecCCCC
Q 008629 378 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFN-EKPLILALSNPT 417 (559)
Q Consensus 378 vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~-erPIIFaLSNPt 417 (559)
.|++|=+.+.+ |- .-+++++.|.+++ +.-||+-.|||-
T Consensus 77 --aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 129 (323)
T cd00704 77 --VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPA 129 (323)
T ss_pred --CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcH
Confidence 88888555543 31 1257788888995 999999999998
No 106
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=88.55 E-value=3.3 Score=44.07 Aligned_cols=111 Identities=23% Similarity=0.188 Sum_probs=74.1
Q ss_pred CCCeeecCCc---chhHHHHHHHHHHHH------------------HhCCCcccceEEEeCcChHHHHHHHHHHHHHHHh
Q 008629 267 THLVFNDDIQ---GTASVVLAGVVAALK------------------LIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQ 325 (559)
Q Consensus 267 ~~~~FnDDiQ---GTaaV~LAgll~Alr------------------~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~ 325 (559)
-+.|+|-.-- ..|=-+++.+|+..| ..|..|.++++.|+|.|..|..+|+.+...
T Consensus 89 gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~af---- 164 (324)
T COG0111 89 GILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAF---- 164 (324)
T ss_pred CCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhC----
Confidence 3444444432 234446777777777 567789999999999999999999998764
Q ss_pred cCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHH
Q 008629 326 TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAM 401 (559)
Q Consensus 326 ~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~M 401 (559)
|+ ++..+|+. ..+. .... .......+|.+.++. .|+|.-.- ..-|.++.+-+..|
T Consensus 165 -gm-------~v~~~d~~----~~~~--~~~~-----~~~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i~~~~~a~M 223 (324)
T COG0111 165 -GM-------KVIGYDPY----SPRE--RAGV-----DGVVGVDSLDELLAE--ADILTLHLPLTPETRGLINAEELAKM 223 (324)
T ss_pred -CC-------eEEEECCC----Cchh--hhcc-----ccceecccHHHHHhh--CCEEEEcCCCCcchhcccCHHHHhhC
Confidence 66 57788873 1110 0100 111223679999986 89888542 22378999999999
Q ss_pred H
Q 008629 402 A 402 (559)
Q Consensus 402 a 402 (559)
.
T Consensus 224 K 224 (324)
T COG0111 224 K 224 (324)
T ss_pred C
Confidence 5
No 107
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=88.32 E-value=0.79 Score=45.15 Aligned_cols=109 Identities=16% Similarity=0.285 Sum_probs=68.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc-CC-----CCCHHHH
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EP-----VNNLLDA 374 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~-~~-----~~~L~e~ 374 (559)
||+|+||||+-. ..++...+.+...++ .+.|+|+|.+ ..|-+.....-+.+++.. .+ ..++.||
T Consensus 1 KI~iIGaGS~~~--~~~l~~~l~~~~~l~----~~ei~L~Did----~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eA 70 (183)
T PF02056_consen 1 KITIIGAGSTYF--PLLLLGDLLRTEELS----GSEIVLMDID----EERLEIVERLARRMVEEAGADLKVEATTDRREA 70 (183)
T ss_dssp EEEEETTTSCCH--HHHHHHHHHCTTTST----EEEEEEE-SC----HHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHH
T ss_pred CEEEECCchHhh--HHHHHHHHhcCccCC----CcEEEEEcCC----HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 799999999964 455555554444553 4689999986 333111122223333321 12 2589999
Q ss_pred hcccCCcEEEeccCCC----------------------------CCCC--------HHHHHHHHcCCCCcEEEecCCCCC
Q 008629 375 VKVIKPTILIGSSGVG----------------------------RTFT--------KEVIEAMASFNEKPLILALSNPTS 418 (559)
Q Consensus 375 V~~vkPtvLIG~S~~~----------------------------g~Ft--------~evv~~Ma~~~erPIIFaLSNPt~ 418 (559)
++. +|.+|=.-.+| |.|. .|+.+.|.++|+.--||=.+||.
T Consensus 71 l~g--ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~- 147 (183)
T PF02056_consen 71 LEG--ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPM- 147 (183)
T ss_dssp HTT--ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSH-
T ss_pred hCC--CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChH-
Confidence 996 88887544433 2221 58899999999999999999998
Q ss_pred CCCCC
Q 008629 419 QSECT 423 (559)
Q Consensus 419 ~~Ect 423 (559)
+++|
T Consensus 148 -~~vt 151 (183)
T PF02056_consen 148 -GIVT 151 (183)
T ss_dssp -HHHH
T ss_pred -HHHH
Confidence 5555
No 108
>PRK06223 malate dehydrogenase; Reviewed
Probab=88.20 E-value=1.1 Score=46.16 Aligned_cols=120 Identities=21% Similarity=0.357 Sum_probs=71.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc----cc-----CCCCC
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH----EH-----EPVNN 370 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~----~~-----~~~~~ 370 (559)
.||.|+|||..|.++|..+.. .|+ . .++++|.+ .++ +......+.+ .. ....+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~-----~~~-----~-ev~L~D~~----~~~---~~~~~~dl~~~~~~~~~~~~i~~~~d 64 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL-----KEL-----G-DVVLFDIV----EGV---PQGKALDIAEAAPVEGFDTKITGTND 64 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----e-EEEEEECC----Cch---hHHHHHHHHhhhhhcCCCcEEEeCCC
Confidence 489999999999999998764 254 2 79999983 211 1111111111 00 01234
Q ss_pred HHHHhcccCCcEEEeccCCC---C-----------CCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCC---
Q 008629 371 LLDAVKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG--- 433 (559)
Q Consensus 371 L~e~V~~vkPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G--- 433 (559)
. ++++. .|++|=+.+.+ | -.-+++++.|.+++...+++-.|||. .....-+++++ |
T Consensus 65 ~-~~~~~--aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~---d~~~~~~~~~s-~~~~ 137 (307)
T PRK06223 65 Y-EDIAG--SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPV---DAMTYVALKES-GFPK 137 (307)
T ss_pred H-HHHCC--CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHh-CCCc
Confidence 5 44654 89888443333 2 12356777888899999888889998 12222334444 3
Q ss_pred cEEEeeCCCCC
Q 008629 434 RAIFASGSPFD 444 (559)
Q Consensus 434 ~aifAsGSPF~ 444 (559)
+-+|++|+-.+
T Consensus 138 ~~viG~gt~ld 148 (307)
T PRK06223 138 NRVIGMAGVLD 148 (307)
T ss_pred ccEEEeCCCcH
Confidence 45888885443
No 109
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=87.33 E-value=1.1 Score=49.55 Aligned_cols=130 Identities=16% Similarity=0.245 Sum_probs=75.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHh-cCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc-cCC-----CCCHH
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQ-TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 372 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~-~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~-~~~-----~~~L~ 372 (559)
.||+|+||||+ -+-.|+..+.+. ..++ -..|+|+|-+ .+|-+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~----~~ei~L~DId----~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~ 69 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFP----LRELVLYDID----AERQEKVAEAVKILFKENYPEIKFVYTTDPE 69 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCC----CCEEEEECCC----HHHHHHHHHHHHHHHHhhCCCeEEEEECCHH
Confidence 48999999996 444444544432 2342 3789999986 33322122222223222 111 24788
Q ss_pred HHhcccCCcEEEeccCC--------------------------CCC--------CCHHHHHHHHcCCCCcEEEecCCCCC
Q 008629 373 DAVKVIKPTILIGSSGV--------------------------GRT--------FTKEVIEAMASFNEKPLILALSNPTS 418 (559)
Q Consensus 373 e~V~~vkPtvLIG~S~~--------------------------~g~--------Ft~evv~~Ma~~~erPIIFaLSNPt~ 418 (559)
||++. +|.+|=.-.+ ||. .-.++++.|.++|+.-+++-.|||.
T Consensus 70 eAl~g--ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~- 146 (437)
T cd05298 70 EAFTD--ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPA- 146 (437)
T ss_pred HHhCC--CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcH-
Confidence 88886 7766633222 232 2257888999999999999999999
Q ss_pred CCCCCHHHHhcccCCcEEEeeCCCCC
Q 008629 419 QSECTAEEAYTWSKGRAIFASGSPFD 444 (559)
Q Consensus 419 ~~EctpedA~~wt~G~aifAsGSPF~ 444 (559)
..+|-.---.++.-|+|=-+-+|+.
T Consensus 147 -~~vt~~~~~~~~~~kviGlC~~~~~ 171 (437)
T cd05298 147 -AIVAEALRRLFPNARILNICDMPIA 171 (437)
T ss_pred -HHHHHHHHHHCCCCCEEEECCcHHH
Confidence 4444322111334455544555543
No 110
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=87.04 E-value=1.9 Score=47.91 Aligned_cols=93 Identities=15% Similarity=0.089 Sum_probs=63.3
Q ss_pred chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHHHHHHHHcC-CCC--eeecCCcchhHHHHHHHHHHHHHh--------
Q 008629 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGT-THL--VFNDDIQGTASVVLAGVVAALKLI-------- 293 (559)
Q Consensus 225 ~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af~lL~ryr~-~~~--~FnDDiQGTaaV~LAgll~Alr~~-------- 293 (559)
-|-..+-+.+..+.... |+ |..|=+....-.++.++|.- ..| ++|++..+.|....+-+++.++..
T Consensus 130 p~Cp~~v~~~~~~a~~~-p~--i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 206 (515)
T TIGR03140 130 QNCPDVVQALNQMALLN-PN--ISHTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASA 206 (515)
T ss_pred CCCHHHHHHHHHHHHhC-CC--ceEEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchh
Confidence 34444444444444444 54 33444666677788999974 455 468888888888888888877654
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHH
Q 008629 294 GGTLAEHRFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 294 g~~l~d~riv~~GAGsAgiGia~ll~~ 320 (559)
...-.+.++||+|||+||+..|..+..
T Consensus 207 ~~~~~~~dVvIIGgGpAGl~AA~~la~ 233 (515)
T TIGR03140 207 LEQLDPYDVLVVGGGPAGAAAAIYAAR 233 (515)
T ss_pred ccccCCCCEEEECCCHHHHHHHHHHHH
Confidence 122445789999999999999887765
No 111
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=86.61 E-value=2.4 Score=41.78 Aligned_cols=96 Identities=16% Similarity=0.170 Sum_probs=59.1
Q ss_pred eEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhc---cc-c----CCCCCH
Q 008629 301 RFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA---HE-H----EPVNNL 371 (559)
Q Consensus 301 riv~~G-AGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA---~~-~----~~~~~L 371 (559)
||.|+| +|..|..+|..+.+. | .+++++|+. .++ +......+. .. . -...+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-----G-------~~V~v~~r~----~~~---~~~l~~~~~~~~~~~g~~~~~~~~~~ 62 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-----G-------NKIIIGSRD----LEK---AEEAAAKALEELGHGGSDIKVTGADN 62 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-----C-------CEEEEEEcC----HHH---HHHHHHHHHhhccccCCCceEEEeCh
Confidence 799997 899999999998753 4 467777663 111 221111111 00 0 011356
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCC
Q 008629 372 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ 419 (559)
Q Consensus 372 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~ 419 (559)
.++++. +|++| ++..+ ...+++++.++..-...+|+.++||...
T Consensus 63 ~ea~~~--aDvVi-lavp~-~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 63 AEAAKR--ADVVI-LAVPW-DHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred HHHHhc--CCEEE-EECCH-HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 778775 78776 44434 3457888888654344799999999854
No 112
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.51 E-value=2.6 Score=44.20 Aligned_cols=85 Identities=19% Similarity=0.230 Sum_probs=67.8
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+-.-+|-+|++.=++-.+.+|+..++|++|-+ ..|.-+|.+|.. .|. .+.+++++ .
T Consensus 135 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~-----~~A-------tVti~hs~-------T---- 191 (281)
T PRK14183 135 GFVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLN-----ANA-------TVDICHIF-------T---- 191 (281)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------C----
Confidence 34567888899999999999999999999998 889999988864 243 24444432 1
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
++|.+.+++ +|++|-..+.++.|+.++|+
T Consensus 192 -------------~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk 220 (281)
T PRK14183 192 -------------KDLKAHTKK--ADIVIVGVGKPNLITEDMVK 220 (281)
T ss_pred -------------cCHHHHHhh--CCEEEEecCcccccCHHHcC
Confidence 246777885 99999999999999999997
No 113
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=86.50 E-value=2 Score=46.05 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=33.5
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+|++.||+|+|+|..|.-+|..|+.+ |+ ++|.++|.+
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~-----Gv------g~i~lvD~D 61 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGA-----GV------GHITIIDDD 61 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 467889999999999999999988764 87 789999998
No 114
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=86.24 E-value=1.6 Score=45.25 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=40.2
Q ss_pred CCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 268 HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 268 ~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
..=+|-|. .|++.+++..|.+. +.+++++|||-|+-+|+-.|.+ .|. ++|+++++.
T Consensus 100 l~G~NTD~--------~Gf~~~L~~~~~~~-~~~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 155 (272)
T PRK12550 100 LKAYNTDY--------IAIAKLLASYQVPP-DLVVALRGSGGMAKAVAAALRD-----AGF------TDGTIVARN 155 (272)
T ss_pred EEEEecCH--------HHHHHHHHhcCCCC-CCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 44556663 35567777666653 4699999999999888877754 365 679999884
No 115
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.12 E-value=5.1 Score=42.44 Aligned_cols=122 Identities=20% Similarity=0.206 Sum_probs=71.8
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCcc--ccCCcCCCchhchhhccccCCCCCHHHHhc
Q 008629 300 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 376 (559)
Q Consensus 300 ~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi--~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~ 376 (559)
-||+|.|| |.-|..++..|+. .|+--.+....++++|.+.-. .++..-++.+..-++..+.....++.++++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~-----~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~ 77 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAK-----GDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFK 77 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHh-----CcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhC
Confidence 37999999 9999999988765 244100111379999985311 011000122111122111111257888888
Q ss_pred ccCCcEEEeccCCCCC--CC------------HHHHHHHHcCC-CCcEEEecCCCCCCCCCCHHHHhccc
Q 008629 377 VIKPTILIGSSGVGRT--FT------------KEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWS 431 (559)
Q Consensus 377 ~vkPtvLIG~S~~~g~--Ft------------~evv~~Ma~~~-erPIIFaLSNPt~~~EctpedA~~wt 431 (559)
. +|++|=+.+.+.. .| +++++.|.+++ ..-||+-.|||. ....--+++++
T Consensus 78 ~--aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~~ 142 (325)
T cd01336 78 D--VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPA---NTNALILLKYA 142 (325)
T ss_pred C--CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcH---HHHHHHHHHHc
Confidence 5 9998866665421 23 56778888886 689999999997 33344444443
No 116
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=86.06 E-value=0.25 Score=46.86 Aligned_cols=89 Identities=25% Similarity=0.409 Sum_probs=49.6
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc-------------CccccCCcCCCchhchhhcc
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-------------GLIVSSRKDSLQHFKKPWAH 363 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~-------------GLi~~~R~~~l~~~k~~fA~ 363 (559)
+...+|||.|+|.+|.|.++++... |. ++...|.. ++.+ .+.+.+.. +.|++
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l-----Ga-------~v~~~d~~~~~~~~~~~~~~~~i~~-~~~~~~~~--~~~~~ 82 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL-----GA-------EVVVPDERPERLRQLESLGAYFIEV-DYEDHLER--KDFDK 82 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSHHHHHHHHHTTTEESEE-TTTTTTTS--B-CCH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC-----CC-------EEEeccCCHHHHHhhhcccCceEEE-cccccccc--cccch
Confidence 5668999999999999999998763 53 24444442 0101 00000000 00222
Q ss_pred c----cCC--CCCHHHHhcccCCcEEEecc-----CCCCCCCHHHHHHHH
Q 008629 364 E----HEP--VNNLLDAVKVIKPTILIGSS-----GVGRTFTKEVIEAMA 402 (559)
Q Consensus 364 ~----~~~--~~~L~e~V~~vkPtvLIG~S-----~~~g~Ft~evv~~Ma 402 (559)
. ... ...|.+.++. .|++|+.. ..|-+||++.++.|.
T Consensus 83 ~~~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m~ 130 (168)
T PF01262_consen 83 ADYYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSMK 130 (168)
T ss_dssp HHCHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTSS
T ss_pred hhhhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhccC
Confidence 1 011 1358888875 79999743 345689999999996
No 117
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=86.05 E-value=0.8 Score=45.56 Aligned_cols=38 Identities=29% Similarity=0.340 Sum_probs=33.5
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+|++.||+++|+|..|..||..|+.+ |+ .+|+++|.+
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 467899999999999999999999763 76 789999997
No 118
>PRK07411 hypothetical protein; Validated
Probab=86.01 E-value=1.9 Score=46.71 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=34.0
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+|++.||+|+|+|.-|.-+|..|+.+ |+ ++|.++|.+
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~-----Gv------g~l~lvD~D 71 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAA-----GI------GRIGIVDFD 71 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 568899999999999999999999875 87 789999987
No 119
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.00 E-value=2.6 Score=44.60 Aligned_cols=102 Identities=25% Similarity=0.333 Sum_probs=67.0
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccC--CCCCHHHHhcc
Q 008629 301 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE--PVNNLLDAVKV 377 (559)
Q Consensus 301 riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~--~~~~L~e~V~~ 377 (559)
||.|+|| |..|..+|-.|+. .|+ ...+.|+|.+ + .++-.-+|.+.. .+.+-.. ...++.+.++.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~-----~~elvLiDi~-~-a~g~alDL~~~~-~~~~i~~~~~~~~~y~~~~d 68 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPL-----VSELALYDIV-N-TPGVAADLSHIN-TPAKVTGYLGPEELKKALKG 68 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEEecC-c-cceeehHhHhCC-CcceEEEecCCCchHHhcCC
Confidence 8999999 9999999887743 366 3679999998 3 222111244332 1111111 11346677776
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 378 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 378 vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.|++|=+.+.+ |- .-+++++.+.++++..+|+-.|||.
T Consensus 69 --aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv 120 (310)
T cd01337 69 --ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120 (310)
T ss_pred --CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 89888565553 21 2246777888899999999999998
No 120
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=85.89 E-value=2.3 Score=43.97 Aligned_cols=99 Identities=15% Similarity=0.208 Sum_probs=62.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhccc-C
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI-K 379 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v-k 379 (559)
||-|+|.|..|..+|..|.+. | .++.++|+. .+ ..+..+..- .....++.|.++.. +
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g-------~~V~~~dr~----~~---~~~~l~~~g---~~~~~s~~~~~~~~~~ 59 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----G-------HDCVGYDHD----QD---AVKAMKEDR---TTGVANLRELSQRLSA 59 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----C-------CEEEEEECC----HH---HHHHHHHcC---CcccCCHHHHHhhcCC
Confidence 699999999999999988752 5 356667663 11 122222111 11224666666532 5
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCCCCCCCHH
Q 008629 380 PTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTSQSECTAE 425 (559)
Q Consensus 380 PtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~~~Ectpe 425 (559)
||++|= +...+ ..+++++.+..+ .+..||+-+||.. ++-+-+
T Consensus 60 ~dvIi~-~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~--~~~t~~ 102 (298)
T TIGR00872 60 PRVVWV-MVPHG-IVDAVLEELAPTLEKGDIVIDGGNSY--YKDSLR 102 (298)
T ss_pred CCEEEE-EcCch-HHHHHHHHHHhhCCCCCEEEECCCCC--cccHHH
Confidence 888874 44444 789999888765 3568999999865 454444
No 121
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=85.63 E-value=8.6 Score=42.07 Aligned_cols=176 Identities=17% Similarity=0.162 Sum_probs=97.5
Q ss_pred cccCcchHHHHHhcCCCCCeeEE-EEecCceecccCCCCCccccc-------hhHHHHHHhHhcCCCCCc----chhHhH
Q 008629 163 SLKEKGKILEVLKNWPERSIQVI-VVTDGERILGLGDLGCQGMGI-------PVGKLALYTALGGIRPSA----EYAELL 230 (559)
Q Consensus 163 s~~d~g~i~~~l~nwp~~~v~vi-VVTDG~rILGLGDlG~~GmgI-------~iGKl~LY~a~gGI~P~~----~y~~~v 230 (559)
+..|...+.++|+.. ++++. +++| +.+..+--.+.+-.-+ ..++. | ..+ |+.... -=.+-.
T Consensus 176 ~~~d~~el~~lL~~~---Gi~v~~~lp~-~~~~d~~~~~~~~~~~~~~~~~~~~A~~-L-~~~-GiP~~~~~~P~G~~~T 248 (427)
T PRK02842 176 ADVVEDQLTLEFKKL---GIGVVGFLPA-RRFTELPAIGPGTVVALAQPFLSDTARA-L-RER-GAKVLTAPFPLGPEGT 248 (427)
T ss_pred CcchHHHHHHHHHHc---CCeeEEEeCC-ccHHHHhhcCcCcEEEEeCHHHHHHHHH-H-HHc-CCccccCCCCcChHHH
Confidence 344545677888765 46664 7787 5566555554332111 12222 2 556 665543 224557
Q ss_pred HHHHHHHHHhhCCCeeeeeccCCCCcHHHHHHHHcCCCCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChH
Q 008629 231 DEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEA 310 (559)
Q Consensus 231 defv~av~~~fGp~~lIq~EDf~~~~Af~lL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsA 310 (559)
++|+.++.+.+|- |. +.+-+.+++.+ +-+..++.-....|+..|++|+|-+.-
T Consensus 249 ~~~L~~la~~~g~-------~~--~~~~~~~~~er------------------~~~~~~l~~~~~~l~Gkrvai~g~~~~ 301 (427)
T PRK02842 249 RAWLEAAAAAFGI-------DP--DGLEEREAPAW------------------ERARKALEPYRELLRGKRVFFLPDSQL 301 (427)
T ss_pred HHHHHHHHHHhCc-------CH--hHHHHHHHHHH------------------HHHHHHHHHhhhhcCCcEEEEECCchh
Confidence 8888888888863 11 11222333333 233455555666788889999999888
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc-----ccCCCCCHHHHhcccCCcEEEe
Q 008629 311 GTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-----EHEPVNNLLDAVKVIKPTILIG 385 (559)
Q Consensus 311 giGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~-----~~~~~~~L~e~V~~vkPtvLIG 385 (559)
.+++++.|.+. .|+.. ..+-+. +.++ +.+.+..+.+.. +..+...+.+.|+..|||.|||
T Consensus 302 ~~~la~~L~ee----lGm~~-------v~v~t~---~~~~-~~~~~~~~~l~~~~~v~~~~D~~~l~~~i~~~~pDllig 366 (427)
T PRK02842 302 EIPLARFLSRE----CGMEL-------VEVGTP---YLNR-RFLAAELALLPDGVRIVEGQDVERQLDRIRALRPDLVVC 366 (427)
T ss_pred HHHHHHHHHHh----CCCEE-------EEeCCC---CCCH-HHHHHHHHhccCCCEEEECCCHHHHHHHHHHcCCCEEEc
Confidence 99999998763 37632 111110 0111 101111111111 1122234688999999999999
Q ss_pred cc
Q 008629 386 SS 387 (559)
Q Consensus 386 ~S 387 (559)
-|
T Consensus 367 ~~ 368 (427)
T PRK02842 367 GL 368 (427)
T ss_pred cC
Confidence 76
No 122
>PRK08374 homoserine dehydrogenase; Provisional
Probab=85.62 E-value=4.2 Score=43.28 Aligned_cols=105 Identities=18% Similarity=0.241 Sum_probs=63.7
Q ss_pred ceEEEeCcChHHHHHHHHHHH---HHHHhcCCChhhhcccEEEEcccCccccCCcCCCc---hhchhhcccc------C-
Q 008629 300 HRFLFLGAGEAGTGIAELIAL---EISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ---HFKKPWAHEH------E- 366 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~---~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~---~~k~~fA~~~------~- 366 (559)
.+|.++|.|..|.+++++|.+ .+.++.|+. -+=+-+.|++|-+...++-++. .+++.+.... .
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~----l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~ 78 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVE----LKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEV 78 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccc
Confidence 589999999999999999977 333334532 1224567999888765531122 2222222100 0
Q ss_pred CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 008629 367 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 411 (559)
Q Consensus 367 ~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 411 (559)
...++.|.++...+||+|-+++.. ..-+-+.+.+. +.+++|.
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t~~~-~a~~~~~~al~--~G~~VVt 120 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVTNDK-NAHEWHLEALK--EGKSVVT 120 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECCCcH-HHHHHHHHHHh--hCCcEEE
Confidence 012688888777899999999633 33333333343 4677875
No 123
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.58 E-value=4.6 Score=42.47 Aligned_cols=93 Identities=23% Similarity=0.375 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 278 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 278 TaaV~LAgll~Alr~~g~~l~d~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
-.-+|-+|++.=++-.|.+++..+++|+|. |..|.-+|.+|... |. .+.++.+ +.
T Consensus 137 ~~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~-----ga-------tVtv~~s-------~t----- 192 (284)
T PRK14179 137 MIPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDK-----NA-------TVTLTHS-------RT----- 192 (284)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHC-----CC-------EEEEECC-------CC-----
Confidence 356778888999999999999999999999 99999999999763 54 3444422 11
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 008629 357 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 414 (559)
Q Consensus 357 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 414 (559)
.+|.+.+++ +|++|-..+.++.+++++++ +..+|.=.+
T Consensus 193 ------------~~l~~~~~~--ADIVI~avg~~~~v~~~~ik------~GavVIDvg 230 (284)
T PRK14179 193 ------------RNLAEVARK--ADILVVAIGRGHFVTKEFVK------EGAVVIDVG 230 (284)
T ss_pred ------------CCHHHHHhh--CCEEEEecCccccCCHHHcc------CCcEEEEec
Confidence 268888986 99999999999999998854 444554443
No 124
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=85.56 E-value=0.82 Score=44.93 Aligned_cols=76 Identities=16% Similarity=0.318 Sum_probs=52.6
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc---cCC-CCC
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEP-VNN 370 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~---~~~-~~~ 370 (559)
++|++.||+|+|+|.-|.-+|+.|+.+ |+ ++|.++|.+- |..+ +|.. +.|... ..+ ...
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~-----GV------g~i~lvD~d~-ve~s---nL~r--qfl~~~~diG~~Ka~a 79 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLS-----GI------GSLTILDDRT-VTEE---DLGA--QFLIPAEDLGQNRAEA 79 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHc-----CC------CEEEEEECCc-ccHh---hCCC--CccccHHHcCchHHHH
Confidence 568899999999999999999999774 87 7899999983 2221 2432 122221 111 135
Q ss_pred HHHHhcccCCcEEEecc
Q 008629 371 LLDAVKVIKPTILIGSS 387 (559)
Q Consensus 371 L~e~V~~vkPtvLIG~S 387 (559)
+.+.++...|++-|=..
T Consensus 80 ~~~~L~~lNp~v~i~~~ 96 (197)
T cd01492 80 SLERLRALNPRVKVSVD 96 (197)
T ss_pred HHHHHHHHCCCCEEEEE
Confidence 77888899999877544
No 125
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.36 E-value=3.1 Score=43.68 Aligned_cols=85 Identities=20% Similarity=0.311 Sum_probs=66.9
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+-.-+|-.|++.-++-.|.+++..+++++|.+. .|.-+|.||.. .|. .+.+++++
T Consensus 136 ~~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~-----~~a-------tVt~chs~------------ 191 (284)
T PRK14190 136 TFLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLN-----ENA-------TVTYCHSK------------ 191 (284)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEEeCC------------
Confidence 345678889999999999999999999999764 67777777754 242 35566432
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
..+|.+.+++ +|++|...+.++.|++++|+
T Consensus 192 ------------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik 221 (284)
T PRK14190 192 ------------TKNLAELTKQ--ADILIVAVGKPKLITADMVK 221 (284)
T ss_pred ------------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1368888986 99999999999999999996
No 126
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=85.35 E-value=4.1 Score=39.26 Aligned_cols=85 Identities=19% Similarity=0.325 Sum_probs=58.2
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+.--+|-.|++.-++..+.+++..+++++|.+. -|.-++.||.. .|. .+.+++++
T Consensus 14 ~~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~-----~~a-------tVt~~h~~------------ 69 (160)
T PF02882_consen 14 GFVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLN-----KGA-------TVTICHSK------------ 69 (160)
T ss_dssp SS--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHH-----TT--------EEEEE-TT------------
T ss_pred CCcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHh-----CCC-------eEEeccCC------------
Confidence 334678889999999999999999999999985 88888877765 243 24445443
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
.++|.+.++. +|++|-..++++.++.++||
T Consensus 70 ------------T~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik 99 (160)
T PF02882_consen 70 ------------TKNLQEITRR--ADIVVSAVGKPNLIKADWIK 99 (160)
T ss_dssp ------------SSSHHHHHTT--SSEEEE-SSSTT-B-GGGS-
T ss_pred ------------CCcccceeee--ccEEeeeecccccccccccc
Confidence 1357777875 99999999999999999886
No 127
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=85.28 E-value=1 Score=44.97 Aligned_cols=104 Identities=23% Similarity=0.304 Sum_probs=60.7
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc--CC-CCCH
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EP-VNNL 371 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~--~~-~~~L 371 (559)
.+|++.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+ .+..+ +|+.+- -|..+. .. ...+
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~-----Gv------g~i~lvD~D-~ve~s---NL~Rq~-l~~~~diG~~Ka~~~ 80 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAA-----GV------GKLGLVDDD-VVELS---NLQRQI-LHTEADVGQPKAEAA 80 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC-EEcCc---cccccc-ccChhhCCChHHHHH
Confidence 468899999999999999999999774 76 789999998 23322 344221 121111 11 1246
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 372 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 372 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.+.++...|++=|=... .-++++-+...-+.. .=||-++-||.
T Consensus 81 ~~~l~~~np~~~i~~~~--~~i~~~~~~~~~~~~-DvVi~~~d~~~ 123 (228)
T cd00757 81 AERLRAINPDVEIEAYN--ERLDAENAEELIAGY-DLVLDCTDNFA 123 (228)
T ss_pred HHHHHHhCCCCEEEEec--ceeCHHHHHHHHhCC-CEEEEcCCCHH
Confidence 67777777775443222 234554444332211 22333556665
No 128
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=85.22 E-value=1.7 Score=48.99 Aligned_cols=101 Identities=18% Similarity=0.222 Sum_probs=57.6
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch------------hchhhccc
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH------------FKKPWAHE 364 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~------------~k~~fA~~ 364 (559)
....|++|+|+|.+|+..+..+... |. ++.++|.+.-.. .+.+.+.. ...-||+.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~l-----GA-------~V~v~d~~~~rl-e~a~~lGa~~v~v~~~e~g~~~~gYa~~ 228 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSL-----GA-------IVRAFDTRPEVK-EQVQSMGAEFLELDFKEEGGSGDGYAKV 228 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCCHHHH-HHHHHcCCeEEeccccccccccccceee
Confidence 4568999999999999987777552 52 377777764211 00000100 00112221
Q ss_pred cCCC------CCHHHHhcccCCcEEEeccCCCC-----CCCHHHHHHHHcCCCCcEEEecCC
Q 008629 365 HEPV------NNLLDAVKVIKPTILIGSSGVGR-----TFTKEVIEAMASFNEKPLILALSN 415 (559)
Q Consensus 365 ~~~~------~~L~e~V~~vkPtvLIG~S~~~g-----~Ft~evv~~Ma~~~erPIIFaLSN 415 (559)
..+. .-+.+.++. .|++|++.-.+| +.|++.++.|.. .-+|.=||-
T Consensus 229 ~s~~~~~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~MKp---GsvIVDlA~ 285 (511)
T TIGR00561 229 MSEEFIAAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDSMKA---GSVIVDLAA 285 (511)
T ss_pred cCHHHHHHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhhCCC---CCEEEEeee
Confidence 1100 114555654 999999994443 589999999973 334444443
No 129
>PRK07574 formate dehydrogenase; Provisional
Probab=85.08 E-value=8.1 Score=42.17 Aligned_cols=142 Identities=13% Similarity=0.134 Sum_probs=84.0
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHH
Q 008629 294 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 373 (559)
Q Consensus 294 g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e 373 (559)
+..|.+++|.|+|.|..|..+|+.+... |+ +++.+|+...- . + . .+.+ ......+|.|
T Consensus 187 ~~~L~gktVGIvG~G~IG~~vA~~l~~f-----G~-------~V~~~dr~~~~---~-~-~---~~~~--g~~~~~~l~e 244 (385)
T PRK07574 187 SYDLEGMTVGIVGAGRIGLAVLRRLKPF-----DV-------KLHYTDRHRLP---E-E-V---EQEL--GLTYHVSFDS 244 (385)
T ss_pred ceecCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCCCc---h-h-h---Hhhc--CceecCCHHH
Confidence 3468899999999999999999998753 65 57788875320 0 0 1 0011 0111257999
Q ss_pred HhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc--ccCCcEEEeeCCCCCCce
Q 008629 374 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT--WSKGRAIFASGSPFDPFE 447 (559)
Q Consensus 374 ~V~~vkPtvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~--wt~G~aifAsGSPF~pv~ 447 (559)
+++. .|+++=.-- .-++|+++.+..|. +..++.=.|. .++.-++|+. ...|+.-.|..-=|.+--
T Consensus 245 ll~~--aDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~iVDe~AL~~AL~sG~i~GAaLDV~~~EP 315 (385)
T PRK07574 245 LVSV--CDVVTIHCPLHPETEHLFDADVLSRMK---RGSYLVNTAR----GKIVDRDAVVRALESGHLAGYAGDVWFPQP 315 (385)
T ss_pred Hhhc--CCEEEEcCCCCHHHHHHhCHHHHhcCC---CCcEEEECCC----CchhhHHHHHHHHHhCCccEEEEecCCCCC
Confidence 9986 898874321 13689999999996 5667776655 5555555442 235665545432221110
Q ss_pred e-CCeeeCccCccccccchhhH
Q 008629 448 Y-NGKVFVPGQANNAYIFPGFG 468 (559)
Q Consensus 448 ~-~G~~~~p~Q~NN~yiFPGlg 468 (559)
. ....+ -+..|+.+-|=++
T Consensus 316 lp~d~pL--~~~pNvilTPHia 335 (385)
T PRK07574 316 APADHPW--RTMPRNGMTPHIS 335 (385)
T ss_pred CCCCChH--HhCCCeEECCccc
Confidence 0 00000 1334777777665
No 130
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=85.08 E-value=2.1 Score=44.79 Aligned_cols=124 Identities=19% Similarity=0.290 Sum_probs=71.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc-c--cCCCCCHHHHhc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-E--HEPVNNLLDAVK 376 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~-~--~~~~~~L~e~V~ 376 (559)
.||.|+|+|..|.++|-.++. .|+ + ++.++|..--+.+++.-++.+ ...+.. . -....++.+ ++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~-----~g~----~--~VvlvDi~~~l~~g~a~d~~~-~~~~~~~~~~i~~t~d~~~-~~ 68 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAE-----KEL----A--DLVLLDVVEGIPQGKALDMYE-ASPVGGFDTKVTGTNNYAD-TA 68 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHH-----cCC----C--eEEEEeCCCChhHHHHHhhhh-hhhccCCCcEEEecCCHHH-hC
Confidence 389999999999999998765 254 2 499999832221111000110 000000 0 011246766 55
Q ss_pred ccCCcEEEeccCCC---C-C------CC----HHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEEeeC
Q 008629 377 VIKPTILIGSSGVG---R-T------FT----KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFASG 440 (559)
Q Consensus 377 ~vkPtvLIG~S~~~---g-~------Ft----~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~--G~aifAsG 440 (559)
. .|++|=+.+.+ | . ++ +++++.|.+++...+|+-.|||. .+...-++++++ -+-+|++|
T Consensus 69 ~--aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~---di~t~~~~~~sg~~~~rviG~g 143 (305)
T TIGR01763 69 N--SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL---DAMTYVAWQKSGFPKERVIGQA 143 (305)
T ss_pred C--CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHEEEec
Confidence 4 78877554433 1 1 23 45666688899999999999998 344444555531 12366776
Q ss_pred C
Q 008629 441 S 441 (559)
Q Consensus 441 S 441 (559)
.
T Consensus 144 ~ 144 (305)
T TIGR01763 144 G 144 (305)
T ss_pred c
Confidence 4
No 131
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.07 E-value=2.8 Score=44.05 Aligned_cols=88 Identities=17% Similarity=0.259 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 278 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 278 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
-.-+|-+|++.=++-.|.+++..++|++|.+. .|.-+|.||...-. ..| ..+..++++
T Consensus 136 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~-~~~-------AtVt~~hs~------------- 194 (286)
T PRK14184 136 FRPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGK-FAN-------ATVTVCHSR------------- 194 (286)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcc-cCC-------CEEEEEeCC-------------
Confidence 35678889999999999999999999999764 57777777653100 012 235555542
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 357 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 357 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
..+|.+.++. +|++|+..+.++.|++++|+
T Consensus 195 -----------t~~l~~~~~~--ADIVI~AvG~p~li~~~~vk 224 (286)
T PRK14184 195 -----------TPDLAEECRE--ADFLFVAIGRPRFVTADMVK 224 (286)
T ss_pred -----------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1358888986 99999999999999999994
No 132
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.89 E-value=6 Score=41.51 Aligned_cols=83 Identities=19% Similarity=0.326 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchh
Q 008629 279 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 357 (559)
Q Consensus 279 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~ 357 (559)
.-+|-+|++.=++-.+.+|+.++++++|-+. .|.-+|.||.. .|. .+.+++|+
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------tVt~chs~-------------- 191 (278)
T PRK14172 138 LPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLN-----ENA-------TVTICHSK-------------- 191 (278)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 5678888999999999999999999999764 67788877754 243 35666542
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 358 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 358 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
.++|.+.+++ +|++|-..+.++.|++++|+
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (278)
T PRK14172 192 ----------TKNLKEVCKK--ADILVVAIGRPKFIDEEYVK 221 (278)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357788886 99999999999999999997
No 133
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.86 E-value=3.2 Score=41.69 Aligned_cols=120 Identities=11% Similarity=0.160 Sum_probs=69.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 379 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 379 (559)
.||.|+|+|..|..+|..+... |. ...+++++|+.. +..+..+..| ...-..+..++++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-----g~----~~~~v~v~~r~~-------~~~~~~~~~~--g~~~~~~~~~~~~~-- 62 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS-----GV----PAKDIIVSDPSP-------EKRAALAEEY--GVRAATDNQEAAQE-- 62 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC-----CC----CcceEEEEcCCH-------HHHHHHHHhc--CCeecCChHHHHhc--
Confidence 4799999999999999888653 43 124677777641 1122222222 01112467777764
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCce
Q 008629 380 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFE 447 (559)
Q Consensus 380 PtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~pv~ 447 (559)
+|++| ++..+ ...+++++.+..+. ..+|..++|-++ .++.-+|....+=+...-|..|..
T Consensus 63 advVi-l~v~~-~~~~~v~~~l~~~~-~~~vvs~~~gi~-----~~~l~~~~~~~~~iv~~~P~~p~~ 122 (267)
T PRK11880 63 ADVVV-LAVKP-QVMEEVLSELKGQL-DKLVVSIAAGVT-----LARLERLLGADLPVVRAMPNTPAL 122 (267)
T ss_pred CCEEE-EEcCH-HHHHHHHHHHHhhc-CCEEEEecCCCC-----HHHHHHhcCCCCcEEEecCCchHH
Confidence 77776 44433 45788888887654 458889999773 344445543222222345555543
No 134
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=84.84 E-value=2.6 Score=46.87 Aligned_cols=85 Identities=16% Similarity=0.160 Sum_probs=62.8
Q ss_pred eeeccCCCCcHHHHHHHHcC-CCC--eeecCCcchhHHHHHHHHHHHHHhC--------CCcccceEEEeCcChHHHHHH
Q 008629 247 IQFEDFANHNAFELLAKYGT-THL--VFNDDIQGTASVVLAGVVAALKLIG--------GTLAEHRFLFLGAGEAGTGIA 315 (559)
Q Consensus 247 Iq~EDf~~~~Af~lL~ryr~-~~~--~FnDDiQGTaaV~LAgll~Alr~~g--------~~l~d~riv~~GAGsAgiGia 315 (559)
|.+|=+...+-.++.++|.- ..| ++||+....|....+-++..++... ....+-.+||+|||.||+..|
T Consensus 148 i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGpaGl~aA 227 (517)
T PRK15317 148 ITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAAA 227 (517)
T ss_pred ceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCCCCEEEECCCHHHHHHH
Confidence 55666666677789999974 455 4688888888999999999887532 123456899999999999999
Q ss_pred HHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 316 ELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 316 ~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
..+.. .|+ ++.++|.+
T Consensus 228 ~~la~-----~G~-------~v~li~~~ 243 (517)
T PRK15317 228 IYAAR-----KGI-------RTGIVAER 243 (517)
T ss_pred HHHHH-----CCC-------cEEEEecC
Confidence 88865 374 56666654
No 135
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=84.63 E-value=1.1 Score=45.54 Aligned_cols=103 Identities=21% Similarity=0.337 Sum_probs=58.7
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc--cCC-CCCH
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEP-VNNL 371 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~--~~~-~~~L 371 (559)
.+|++.||+++|+|..|.-+|..|+.+ |+ ++|.++|.+=+ .. .+|+.+ .-|..+ ... ...+
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~-----Gv------g~i~lvD~D~v-e~---sNL~RQ-~l~~~~diG~~Ka~~a 83 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAA-----GV------GNLTLLDFDTV-SL---SNLQRQ-VLHSDANIGQPKVESA 83 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCcc-cc---cCcccc-eeeeHhhCCCcHHHHH
Confidence 468889999999999999999999764 76 78999999722 22 124321 111111 001 1235
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE-ecCCCC
Q 008629 372 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL-ALSNPT 417 (559)
Q Consensus 372 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF-aLSNPt 417 (559)
.+.++...|++-|-.-. ..++++-+.+.-+ +--+|+ +.-||.
T Consensus 84 ~~~l~~inp~v~i~~~~--~~i~~~~~~~~~~--~~DlVvd~~D~~~ 126 (240)
T TIGR02355 84 KDALTQINPHIAINPIN--AKLDDAELAALIA--EHDIVVDCTDNVE 126 (240)
T ss_pred HHHHHHHCCCcEEEEEe--ccCCHHHHHHHhh--cCCEEEEcCCCHH
Confidence 56666666776654332 2345443333211 222444 555554
No 136
>PRK08291 ectoine utilization protein EutC; Validated
Probab=84.50 E-value=3.4 Score=43.57 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=65.7
Q ss_pred HHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc
Q 008629 285 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 364 (559)
Q Consensus 285 gll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~ 364 (559)
|.+++..... -..++++++|+|..|..++..+... .++ +++.++|+. .++ ...+...+.+.
T Consensus 120 ~~~a~~~la~--~~~~~v~IiGaG~~a~~~~~al~~~----~~~------~~V~v~~R~----~~~---a~~l~~~~~~~ 180 (330)
T PRK08291 120 GAVAARHLAR--EDASRAAVIGAGEQARLQLEALTLV----RPI------REVRVWARD----AAK---AEAYAADLRAE 180 (330)
T ss_pred HHHHHHHhCC--CCCCEEEEECCCHHHHHHHHHHHhc----CCC------CEEEEEcCC----HHH---HHHHHHHHhhc
Confidence 4455544432 2347999999999988777766542 243 578888763 222 22332222211
Q ss_pred ----cCCCCCHHHHhcccCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcEEEec-CCCCCCCCCCHHH
Q 008629 365 ----HEPVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEE 426 (559)
Q Consensus 365 ----~~~~~~L~e~V~~vkPtvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~~Ectped 426 (559)
.....++.++++. .|++|-++.. ...|+.+.++. .--|.++ |+--.+-|+.|+-
T Consensus 181 ~g~~v~~~~d~~~al~~--aDiVi~aT~s~~p~i~~~~l~~------g~~v~~vg~d~~~~rEld~~~ 240 (330)
T PRK08291 181 LGIPVTVARDVHEAVAG--ADIIVTTTPSEEPILKAEWLHP------GLHVTAMGSDAEHKNEIAPAV 240 (330)
T ss_pred cCceEEEeCCHHHHHcc--CCEEEEeeCCCCcEecHHHcCC------CceEEeeCCCCCCcccCCHHH
Confidence 1123678999985 8999876543 34667766652 1123333 4433456888765
No 137
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.45 E-value=4.5 Score=42.54 Aligned_cols=82 Identities=24% Similarity=0.331 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhc
Q 008629 280 SVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 358 (559)
Q Consensus 280 aV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k 358 (559)
-+|-.|++.=++-.+.+++.+++|++|.+. .|--+|.||.. .|. .+.+++|+
T Consensus 140 PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------tVt~chs~--------------- 192 (284)
T PRK14177 140 PCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTE-----MNA-------TVTLCHSK--------------- 192 (284)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC---------------
Confidence 456678888888899999999999999764 67777777754 243 36666543
Q ss_pred hhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 359 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 359 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
.++|.+.+++ +|++|-..+.++.++.++|+
T Consensus 193 ---------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik 222 (284)
T PRK14177 193 ---------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWIS 222 (284)
T ss_pred ---------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcC
Confidence 1357778886 99999999999999999997
No 138
>PRK13243 glyoxylate reductase; Reviewed
Probab=84.45 E-value=9.6 Score=40.45 Aligned_cols=140 Identities=14% Similarity=0.135 Sum_probs=83.5
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHH
Q 008629 294 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 373 (559)
Q Consensus 294 g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e 373 (559)
|..|.+++|.|+|.|..|..+|+.+... |+ +++.+|+.. . . .. ...+. -...+|.|
T Consensus 145 g~~L~gktvgIiG~G~IG~~vA~~l~~~-----G~-------~V~~~d~~~----~--~-~~--~~~~~---~~~~~l~e 200 (333)
T PRK13243 145 GYDVYGKTIGIIGFGRIGQAVARRAKGF-----GM-------RILYYSRTR----K--P-EA--EKELG---AEYRPLEE 200 (333)
T ss_pred ccCCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCCC----C--h-hh--HHHcC---CEecCHHH
Confidence 4568999999999999999999998653 64 577788741 1 1 11 01111 11247999
Q ss_pred HhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHh-cc-cCCcEEEeeCCCC--CC
Q 008629 374 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY-TW-SKGRAIFASGSPF--DP 445 (559)
Q Consensus 374 ~V~~vkPtvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~-~w-t~G~aifAsGSPF--~p 445 (559)
+++. .|+++=.-- .-+.|+++.+..|. +..++.=.|. .++--++|+ ++ ..|+.-.|.=-=| +|
T Consensus 201 ll~~--aDiV~l~lP~t~~T~~~i~~~~~~~mk---~ga~lIN~aR----g~~vd~~aL~~aL~~g~i~gAaLDV~~~EP 271 (333)
T PRK13243 201 LLRE--SDFVSLHVPLTKETYHMINEERLKLMK---PTAILVNTAR----GKVVDTKALVKALKEGWIAGAGLDVFEEEP 271 (333)
T ss_pred HHhh--CCEEEEeCCCChHHhhccCHHHHhcCC---CCeEEEECcC----chhcCHHHHHHHHHcCCeEEEEeccCCCCC
Confidence 9886 898875431 13689999999996 6677776655 333333333 22 4566543321111 11
Q ss_pred ceeCCeeeCccCccccccchhhHHH
Q 008629 446 FEYNGKVFVPGQANNAYIFPGFGLG 470 (559)
Q Consensus 446 v~~~G~~~~p~Q~NN~yiFPGlglG 470 (559)
.. + .. -=+..|+++-|=+|-.
T Consensus 272 ~~-~-~p--L~~~~nvilTPHia~~ 292 (333)
T PRK13243 272 YY-N-EE--LFSLKNVVLAPHIGSA 292 (333)
T ss_pred CC-C-ch--hhcCCCEEECCcCCcC
Confidence 11 1 11 1234688999988743
No 139
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.38 E-value=1.5 Score=45.75 Aligned_cols=32 Identities=34% Similarity=0.406 Sum_probs=25.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.||.|+|+|+.|.++|..|... |. ++.++|+.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~-----G~-------~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK-----GV-------PVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEeCC
Confidence 3799999999999999998763 52 47777763
No 140
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=84.28 E-value=6.6 Score=41.57 Aligned_cols=126 Identities=24% Similarity=0.333 Sum_probs=75.0
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc--CCCCCHHHHhcc
Q 008629 301 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 377 (559)
Q Consensus 301 riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~--~~~~~L~e~V~~ 377 (559)
||.|+|| |.-|..+|-+|+. .|+ ...+.|+|.+. ..+-.-+|.+.. ...+-. ....++.++++.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~--a~g~a~DL~~~~-~~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-----QPY-----VSELSLYDIAG--AAGVAADLSHIP-TAASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEecCCC--CcEEEchhhcCC-cCceEEEecCCCchHHHcCC
Confidence 6899999 9999999988754 255 26799999876 111111244322 101101 111246777876
Q ss_pred cCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCC-CCCCCHHHHhcccC--CcEEEeeC
Q 008629 378 IKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTS-QSECTAEEAYTWSK--GRAIFASG 440 (559)
Q Consensus 378 vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~-~~EctpedA~~wt~--G~aifAsG 440 (559)
.|++|=+.+.+.. .=+++.+.+.+++..-||+-.|||.. ++.+...-+++++. -+-+|++|
T Consensus 68 --aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g 145 (312)
T TIGR01772 68 --ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVT 145 (312)
T ss_pred --CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeee
Confidence 8988755555421 12466777888999999999999982 12223444444321 01255555
Q ss_pred C
Q 008629 441 S 441 (559)
Q Consensus 441 S 441 (559)
.
T Consensus 146 ~ 146 (312)
T TIGR01772 146 T 146 (312)
T ss_pred c
Confidence 3
No 141
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.95 E-value=6 Score=41.94 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=65.8
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCcc--ccCCcCCCchhchhhccccCCCCCHHHHhc
Q 008629 300 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 376 (559)
Q Consensus 300 ~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi--~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~ 376 (559)
.||.|+|| |..|..+|-.|+. .|+-.-.-...+.|+|.+.=. .++..-+|.+...+|.....-..+..+.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 77 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIAS-----GEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK 77 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----ccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC
Confidence 38999999 9999988877664 255100011379999985322 111111243333233221111134566677
Q ss_pred ccCCcEEEeccCCC---CCCC------------HHHHHHHHcCC-CCcEEEecCCCC
Q 008629 377 VIKPTILIGSSGVG---RTFT------------KEVIEAMASFN-EKPLILALSNPT 417 (559)
Q Consensus 377 ~vkPtvLIG~S~~~---g~Ft------------~evv~~Ma~~~-erPIIFaLSNPt 417 (559)
. .|++|=+.+.+ | .| +++.+.+.+++ +.-||+-.|||-
T Consensus 78 d--aDivvitaG~~~k~g-~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 131 (322)
T cd01338 78 D--ADWALLVGAKPRGPG-MERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC 131 (322)
T ss_pred C--CCEEEEeCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH
Confidence 5 89988665553 3 23 45677788899 499999999998
No 142
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.66 E-value=3.5 Score=43.47 Aligned_cols=83 Identities=19% Similarity=0.324 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 278 TASVVLAGVVAALKLIGGTLAEHRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 278 TaaV~LAgll~Alr~~g~~l~d~riv~~G-AGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
-.-+|-.|++.=++-.+.+++.++|+|+| .|..|..+|.+|.. .|. .++++++ |..
T Consensus 137 ~~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~-----~g~-------tVtv~~~-------rT~---- 193 (296)
T PRK14188 137 LVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLA-----ANA-------TVTIAHS-------RTR---- 193 (296)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHh-----CCC-------EEEEECC-------CCC----
Confidence 34667788888889999999999999999 99999999999975 253 4555543 211
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHH
Q 008629 357 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVI 398 (559)
Q Consensus 357 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv 398 (559)
+|.|+++. .|++|-+-+.+..++++++
T Consensus 194 -------------~l~e~~~~--ADIVIsavg~~~~v~~~~l 220 (296)
T PRK14188 194 -------------DLPAVCRR--ADILVAAVGRPEMVKGDWI 220 (296)
T ss_pred -------------CHHHHHhc--CCEEEEecCChhhcchhee
Confidence 37888875 8999988887877777663
No 143
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=83.32 E-value=1.1 Score=44.11 Aligned_cols=74 Identities=19% Similarity=0.324 Sum_probs=48.6
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc-cCCC-----
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPV----- 368 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~-~~~~----- 368 (559)
++|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+= +..+ +|+.+ .|.+. ....
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~-----GV------g~i~lvD~d~-ve~s---nl~rq--~~~~~~~~~iG~~Ka 77 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLA-----GI------DSITIVDHRL-VSTE---DLGSN--FFLDAEVSNSGMNRA 77 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEECCc-CChh---cCccc--EecccchhhcCchHH
Confidence 468899999999999999999999774 87 7899999983 2221 24321 12221 0111
Q ss_pred CCHHHHhcccCCcEEEe
Q 008629 369 NNLLDAVKVIKPTILIG 385 (559)
Q Consensus 369 ~~L~e~V~~vkPtvLIG 385 (559)
..+.+.++...|++=|=
T Consensus 78 ~~~~~~L~~lNp~v~i~ 94 (198)
T cd01485 78 AASYEFLQELNPNVKLS 94 (198)
T ss_pred HHHHHHHHHHCCCCEEE
Confidence 24566677777877543
No 144
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=83.08 E-value=15 Score=41.34 Aligned_cols=36 Identities=22% Similarity=0.104 Sum_probs=28.8
Q ss_pred CccCccccccchhhHHHHHHhCCcccCHHHHHHHHH
Q 008629 454 VPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASE 489 (559)
Q Consensus 454 ~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~ 489 (559)
.||..+|-+.+|.+.-+..+...--++.+.+.++.+
T Consensus 186 ~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 186 TPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 578899999999998888888777677777776654
No 145
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.02 E-value=4 Score=43.07 Aligned_cols=95 Identities=15% Similarity=0.291 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchh
Q 008629 279 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 357 (559)
Q Consensus 279 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~ 357 (559)
.-+|-.|++.=++..+.+++..++|++|.+. .|.-+|.||.+.+.+ .| ..+..+.++
T Consensus 139 ~PcTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~-~~-------atVt~~hs~-------------- 196 (295)
T PRK14174 139 VSCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKE-SN-------CTVTICHSA-------------- 196 (295)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhcccc-CC-------CEEEEEeCC--------------
Confidence 3567778888899999999999999999764 677788777643211 12 234444332
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEec
Q 008629 358 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 413 (559)
Q Consensus 358 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 413 (559)
..+|.+.+++ +|++|+..+.++.|++++|+ +.-+|.-.
T Consensus 197 ----------t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk------~GavVIDV 234 (295)
T PRK14174 197 ----------TKDIPSYTRQ--ADILIAAIGKARFITADMVK------PGAVVIDV 234 (295)
T ss_pred ----------chhHHHHHHh--CCEEEEecCccCccCHHHcC------CCCEEEEe
Confidence 1358888986 99999999999999999995 45566433
No 146
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=82.88 E-value=2.2 Score=45.77 Aligned_cols=106 Identities=23% Similarity=0.390 Sum_probs=72.2
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc----cCCCCCHH
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLL 372 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~----~~~~~~L~ 372 (559)
...-|++++|.|-+|+--|++.+ |+. .++.++|.+ .+| |....-.|..+ ......++
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~-------glg-----A~Vtild~n----~~r---l~~ldd~f~~rv~~~~st~~~ie 226 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI-------GLG-----ADVTILDLN----IDR---LRQLDDLFGGRVHTLYSTPSNIE 226 (371)
T ss_pred CCCccEEEECCccccchHHHHHh-------ccC-----CeeEEEecC----HHH---HhhhhHhhCceeEEEEcCHHHHH
Confidence 56789999999999999988765 432 467778764 333 44444444432 12224699
Q ss_pred HHhcccCCcEEEec-----cCCCCCCCHHHHHHHHcCCCCcEE----------EecCCCCCCCCCCHHH
Q 008629 373 DAVKVIKPTILIGS-----SGVGRTFTKEVIEAMASFNEKPLI----------LALSNPTSQSECTAEE 426 (559)
Q Consensus 373 e~V~~vkPtvLIG~-----S~~~g~Ft~evv~~Ma~~~erPII----------FaLSNPt~~~Ectped 426 (559)
|+|++ .|.+||. +..|.+.|+|+++.|. +.-+| |-=|.||+..+-|.++
T Consensus 227 e~v~~--aDlvIgaVLIpgakaPkLvt~e~vk~Mk---pGsVivDVAiDqGGc~Et~~~TTh~~PtY~~ 290 (371)
T COG0686 227 EAVKK--ADLVIGAVLIPGAKAPKLVTREMVKQMK---PGSVIVDVAIDQGGCFETSHPTTHDDPTYEV 290 (371)
T ss_pred HHhhh--ccEEEEEEEecCCCCceehhHHHHHhcC---CCcEEEEEEEcCCCceeccccccCCCCceee
Confidence 99985 9998887 4556789999999997 33333 5556777776666543
No 147
>PLN02306 hydroxypyruvate reductase
Probab=82.82 E-value=10 Score=41.37 Aligned_cols=167 Identities=15% Similarity=0.228 Sum_probs=94.0
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc--------c-
Q 008629 294 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--------E- 364 (559)
Q Consensus 294 g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~--------~- 364 (559)
|..|.++++.|+|.|..|..+|+++..+| |+ +++.+|+..- . .+..+...+-. +
T Consensus 160 g~~L~gktvGIiG~G~IG~~vA~~l~~~f----Gm-------~V~~~d~~~~---~---~~~~~~~~~~~~l~~~~~~~~ 222 (386)
T PLN02306 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------NLIYYDLYQS---T---RLEKFVTAYGQFLKANGEQPV 222 (386)
T ss_pred CcCCCCCEEEEECCCHHHHHHHHHHHhcC----CC-------EEEEECCCCc---h---hhhhhhhhhcccccccccccc
Confidence 44688999999999999999999986543 64 5888887421 0 01111001100 0
Q ss_pred -cCCCCCHHHHhcccCCcEEEec----cCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc--cCCcEEE
Q 008629 365 -HEPVNNLLDAVKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW--SKGRAIF 437 (559)
Q Consensus 365 -~~~~~~L~e~V~~vkPtvLIG~----S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~w--t~G~aif 437 (559)
.....+|.|+++. .|+++-. ...-|.|+++.++.|. +.-++.=.| +.++-=|+|+.- ..|+.-.
T Consensus 223 ~~~~~~~L~ell~~--sDiV~lh~Plt~~T~~lin~~~l~~MK---~ga~lIN~a----RG~lVDe~AL~~AL~sg~i~g 293 (386)
T PLN02306 223 TWKRASSMEEVLRE--ADVISLHPVLDKTTYHLINKERLALMK---KEAVLVNAS----RGPVIDEVALVEHLKANPMFR 293 (386)
T ss_pred cccccCCHHHHHhh--CCEEEEeCCCChhhhhhcCHHHHHhCC---CCeEEEECC----CccccCHHHHHHHHHhCCeeE
Confidence 0112479999986 9998873 2234799999999996 555666555 455555555422 2455332
Q ss_pred eeCC-CC--CCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccC
Q 008629 438 ASGS-PF--DPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVT 496 (559)
Q Consensus 438 AsGS-PF--~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~ 496 (559)
| |- =| +|. .+. .-=+..|+.+-|=++-...-+ ...|...+++-+.....
T Consensus 294 A-aLDVf~~EP~-~~~---~L~~~pNVilTPHiag~T~e~-----~~~~~~~~~~ni~~~~~ 345 (386)
T PLN02306 294 V-GLDVFEDEPY-MKP---GLADMKNAVVVPHIASASKWT-----REGMATLAALNVLGKLK 345 (386)
T ss_pred E-EEeCCCCCCC-Ccc---hHhhCCCEEECCccccCcHHH-----HHHHHHHHHHHHHHHHc
Confidence 2 21 01 111 011 112456888989877322211 13444445555544443
No 148
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=82.43 E-value=1.7 Score=44.18 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=33.9
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~-----Gv------g~i~lvD~D 65 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAA-----GV------GTLTLVDFD 65 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 478899999999999999999999774 76 789999998
No 149
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=82.37 E-value=2.1 Score=42.22 Aligned_cols=118 Identities=12% Similarity=0.173 Sum_probs=67.6
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcc
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 377 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~ 377 (559)
++.||.|+|+|..|..++..+... |.. -.++++++++. + .+.+...+.+|- .....++.++++.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~-----~~~---~~~~i~~~~~~-----~-~~~~~~~~~~~~--~~~~~~~~~~~~~ 66 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKT-----SKE---YIEEIIVSNRS-----N-VEKLDQLQARYN--VSTTTDWKQHVTS 66 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-----CCC---CcCeEEEECCC-----C-HHHHHHHHHHcC--cEEeCChHHHHhc
Confidence 457899999999999998888642 310 11346655542 0 111333332231 1122467888874
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC-CcEEEeeC
Q 008629 378 IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK-GRAIFASG 440 (559)
Q Consensus 378 vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~-G~aifAsG 440 (559)
.|++| ++..+. .-+++++.++.+-...+|+.++.-. +.++.-+|.+ +..++-++
T Consensus 67 --~DiVi-iavp~~-~~~~v~~~l~~~~~~~~vis~~~gi-----~~~~l~~~~~~~~~v~r~~ 121 (245)
T PRK07634 67 --VDTIV-LAMPPS-AHEELLAELSPLLSNQLVVTVAAGI-----GPSYLEERLPKGTPVAWIM 121 (245)
T ss_pred --CCEEE-EecCHH-HHHHHHHHHHhhccCCEEEEECCCC-----CHHHHHHHcCCCCeEEEEC
Confidence 78776 455454 4588999887543445777777665 3344444443 33455555
No 150
>PRK06436 glycerate dehydrogenase; Provisional
Probab=82.33 E-value=16 Score=38.47 Aligned_cols=92 Identities=14% Similarity=0.131 Sum_probs=63.9
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHH
Q 008629 294 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 373 (559)
Q Consensus 294 g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e 373 (559)
+..|.+.++.|+|-|..|..+|+++. + .|+ +++.+|+... .+.. + . ...+|.|
T Consensus 117 ~~~L~gktvgIiG~G~IG~~vA~~l~-a----fG~-------~V~~~~r~~~-----~~~~---~-~------~~~~l~e 169 (303)
T PRK06436 117 TKLLYNKSLGILGYGGIGRRVALLAK-A----FGM-------NIYAYTRSYV-----NDGI---S-S------IYMEPED 169 (303)
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHH-H----CCC-------EEEEECCCCc-----ccCc---c-c------ccCCHHH
Confidence 45799999999999999999998664 3 265 5888887511 0111 0 0 1247899
Q ss_pred HhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 374 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 374 ~V~~vkPtvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
+++. .|+++=+-. .-+.|+++.++.|. +..++.=.|.-.
T Consensus 170 ll~~--aDiv~~~lp~t~~T~~li~~~~l~~mk---~ga~lIN~sRG~ 212 (303)
T PRK06436 170 IMKK--SDFVLISLPLTDETRGMINSKMLSLFR---KGLAIINVARAD 212 (303)
T ss_pred HHhh--CCEEEECCCCCchhhcCcCHHHHhcCC---CCeEEEECCCcc
Confidence 8875 888874321 23688999999996 677888777643
No 151
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.24 E-value=4.3 Score=43.88 Aligned_cols=114 Identities=19% Similarity=0.223 Sum_probs=61.2
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC-ccccCCcCCCchhchhhccccCCCCCHHHH
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG-LIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 374 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G-Li~~~R~~~l~~~k~~fA~~~~~~~~L~e~ 374 (559)
.+++.+++|+|+|.+|.++|+.|.. .| .+++++|++. .....+.+.|......+... ....+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~-----~G-------~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~ 65 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKK-----LG-------AKVILTDEKEEDQLKEALEELGELGIELVLG----EYPEEF 65 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHH-----CC-------CEEEEEeCCchHHHHHHHHHHHhcCCEEEeC----CcchhH
Confidence 3677899999999999999988876 36 4689998863 00000000011100011000 001122
Q ss_pred hcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCC
Q 008629 375 VKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGS 441 (559)
Q Consensus 375 V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGS 441 (559)
+. ++|++|-.++.. .-++++..+= ...-||+ ++.|+.... ...+.|-.|||
T Consensus 66 ~~--~~d~vv~~~g~~-~~~~~~~~a~--~~~i~~~-------~~~~~~~~~----~~~~vI~ITGS 116 (450)
T PRK14106 66 LE--GVDLVVVSPGVP-LDSPPVVQAH--KKGIEVI-------GEVELAYRF----SKAPIVAITGT 116 (450)
T ss_pred hh--cCCEEEECCCCC-CCCHHHHHHH--HCCCcEE-------eHHHHHHhh----cCCCEEEEeCC
Confidence 33 489888766643 4456555442 2345665 223332222 23678889998
No 152
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=82.21 E-value=6.3 Score=41.78 Aligned_cols=85 Identities=16% Similarity=0.237 Sum_probs=66.6
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+-.-+|-+|++.=++-.|.+|+.+++|++|-+. .|.-+|.||.. .|. .+.+++|+
T Consensus 145 ~~~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~-----~~A-------TVtvchs~------------ 200 (299)
T PLN02516 145 LFLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLK-----ADA-------TVTVVHSR------------ 200 (299)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC------------
Confidence 345677788899999999999999999999764 57777777754 242 46666553
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
.++|.+.+++ +|++|-..+.++.|+.++|+
T Consensus 201 ------------T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk 230 (299)
T PLN02516 201 ------------TPDPESIVRE--ADIVIAAAGQAMMIKGDWIK 230 (299)
T ss_pred ------------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357888886 99999999999999999997
No 153
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=82.08 E-value=2.3 Score=43.65 Aligned_cols=102 Identities=15% Similarity=0.203 Sum_probs=57.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccC-CcCCCch--hc-hhhccccCCCCCHHHHhc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQH--FK-KPWAHEHEPVNNLLDAVK 376 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~-R~~~l~~--~k-~~fA~~~~~~~~L~e~V~ 376 (559)
||.|+|+|..|..+|..|... | .+++++|+..-.... +...... .. ...........++.++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----G-------HDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA 70 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh
Confidence 799999999999999998753 4 357777774211100 0000000 00 000000011246777776
Q ss_pred ccCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 008629 377 VIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 418 (559)
Q Consensus 377 ~vkPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 418 (559)
. +|++| ++... ...+++++.+..+ .+..+|..++|-..
T Consensus 71 ~--~D~vi-~~v~~-~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 71 D--ADLIL-VAVPS-QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred C--CCEEE-EeCCH-HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 4 77776 33322 3578888887754 34568888887443
No 154
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=81.84 E-value=2.9 Score=43.33 Aligned_cols=118 Identities=19% Similarity=0.374 Sum_probs=69.2
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcC----CCchhchhhcccc---CCCCCHHHH
Q 008629 302 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHEH---EPVNNLLDA 374 (559)
Q Consensus 302 iv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~----~l~~~k~~fA~~~---~~~~~L~e~ 374 (559)
|.|+|||..|.++|..++. .|+ + .++|+|.+ .++.+ ++.+.. .+.... ....+.. +
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l----~--eV~L~Di~----e~~~~g~~~dl~~~~-~~~~~~~~I~~t~d~~-~ 63 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KEL----G--DVVLLDIV----EGLPQGKALDISQAA-PILGSDTKVTGTNDYE-D 63 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCC----c--EEEEEeCC----CcHHHHHHHHHHHhh-hhcCCCeEEEEcCCHH-H
Confidence 5799999999999987764 365 2 69999986 22210 011110 000000 0113444 4
Q ss_pred hcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEEe
Q 008629 375 VKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFA 438 (559)
Q Consensus 375 V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~--G~aifA 438 (559)
++. .|++|=+.+.+.. +-+++++.|.+++...+|+-.|||. ......++++++ -+-+|+
T Consensus 64 l~d--ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~---di~t~~~~~~s~~~~~rviG 138 (300)
T cd01339 64 IAG--SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPL---DVMTYVAYKASGFPRNRVIG 138 (300)
T ss_pred hCC--CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCHHHEEE
Confidence 654 8888844333211 2347888999999999999999998 233334445441 124777
Q ss_pred eCC
Q 008629 439 SGS 441 (559)
Q Consensus 439 sGS 441 (559)
+|+
T Consensus 139 lgt 141 (300)
T cd01339 139 MAG 141 (300)
T ss_pred ecc
Confidence 774
No 155
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.79 E-value=9.6 Score=40.34 Aligned_cols=85 Identities=19% Similarity=0.241 Sum_probs=66.3
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+-.-+|-.|++.-++..|.+++.+++|++|.+. .|.-+|.||.. .|. .+.+++|+ +
T Consensus 138 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------TVt~chs~-------T---- 194 (294)
T PRK14187 138 CLIPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLG-----ENC-------TVTTVHSA-------T---- 194 (294)
T ss_pred CccCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhh-----CCC-------EEEEeCCC-------C----
Confidence 345678888899999999999999999999764 57777777753 242 35566553 1
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
++|.+.+++ +|++|-..+.++.++.++|+
T Consensus 195 -------------~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 223 (294)
T PRK14187 195 -------------RDLADYCSK--ADILVAAVGIPNFVKYSWIK 223 (294)
T ss_pred -------------CCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 357777886 99999999999999999997
No 156
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=81.48 E-value=4.3 Score=42.25 Aligned_cols=108 Identities=16% Similarity=0.198 Sum_probs=65.2
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc--CC-CCCH
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EP-VNNL 371 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~--~~-~~~L 371 (559)
.+|++.+|+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+=+-.. +++. |..+-.+. .. ..-+
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~-----GV------g~itLiD~D~V~~s----NlnR-Q~~~~~~~vG~~Kve~~ 89 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALART-----GI------GAITLIDMDDVCVT----NTNR-QIHALRDNVGLAKAEVM 89 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCEeccc----cccc-ccccChhhcChHHHHHH
Confidence 468899999999999999999998874 76 78999998844332 2442 21111110 00 1246
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCC
Q 008629 372 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQS 420 (559)
Q Consensus 372 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~ 420 (559)
.+-+..+.|++-|-.- ...++++-+...-...-.=||-+.-|+..+.
T Consensus 90 ~~rl~~INP~~~V~~i--~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~ 136 (268)
T PRK15116 90 AERIRQINPECRVTVV--DDFITPDNVAEYMSAGFSYVIDAIDSVRPKA 136 (268)
T ss_pred HHHHHhHCCCcEEEEE--ecccChhhHHHHhcCCCCEEEEcCCCHHHHH
Confidence 6777777788766432 2345655554443222234666777766433
No 157
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.46 E-value=4.1 Score=43.29 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=25.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 342 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~ 342 (559)
.||.|+|+|..|.|||..++.+ |. ++.++|.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a-----G~-------~V~l~D~ 38 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH-----GL-------DVVAWDP 38 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeC
Confidence 5899999999999999998763 64 4666665
No 158
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.42 E-value=28 Score=35.52 Aligned_cols=32 Identities=31% Similarity=0.567 Sum_probs=26.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+||.|+|+|..|.+||..+... |. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-----g~-------~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-----GY-------DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-----CC-------ceEEEeCC
Confidence 5899999999999999988653 64 68888853
No 159
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=81.42 E-value=8.6 Score=40.90 Aligned_cols=111 Identities=17% Similarity=0.126 Sum_probs=66.2
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCcc--ccCCcCCCchhchhhccccCCCCCHHHHhc
Q 008629 300 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 376 (559)
Q Consensus 300 ~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi--~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~ 376 (559)
-||.|+|| |..|..+|-.|+. .|+-.-+-...|.|+|.+.-. .++..-+|.+..-++-+...-..+..+.++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 78 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIAS-----GELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFK 78 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----CCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhC
Confidence 38999998 9999999887764 355110011279999985311 111111233322122221111135566677
Q ss_pred ccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCC-CcEEEecCCCC
Q 008629 377 VIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNE-KPLILALSNPT 417 (559)
Q Consensus 377 ~vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~e-rPIIFaLSNPt 417 (559)
. .|++|=+.+.+ |- .=+++++.+++++. .-||+--|||-
T Consensus 79 d--aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv 132 (323)
T TIGR01759 79 D--VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA 132 (323)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH
Confidence 5 89888555543 31 12457778888997 99999999998
No 160
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.30 E-value=6.3 Score=41.40 Aligned_cols=85 Identities=18% Similarity=0.271 Sum_probs=67.1
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+-.-+|-+|++.=++-.|.+++.++++++|-+. .|--+|.||.. .|. .+.+|+|+ +
T Consensus 135 ~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~a-------tVt~chs~-------T---- 191 (282)
T PRK14166 135 GFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLN-----AGA-------TVSVCHIK-------T---- 191 (282)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------C----
Confidence 456778889999999999999999999999764 67777777753 243 35555543 1
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
++|.+.+++ +|++|-..+.++.|++++|+
T Consensus 192 -------------~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 220 (282)
T PRK14166 192 -------------KDLSLYTRQ--ADLIIVAAGCVNLLRSDMVK 220 (282)
T ss_pred -------------CCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 358888886 99999999999999999997
No 161
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=81.20 E-value=4.3 Score=41.29 Aligned_cols=101 Identities=13% Similarity=0.131 Sum_probs=56.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch--h-chhhccccCCCCCHHHHhcc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH--F-KKPWAHEHEPVNNLLDAVKV 377 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~--~-k~~fA~~~~~~~~L~e~V~~ 377 (559)
||.|+|+|+.|..+|..|... | .+++++++.--+..-+...+.- . ..... ......++.++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~- 67 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G-------RDVTFLVRPKRAKALRERGLVIRSDHGDAVV-PGPVITDPEELTG- 67 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C-------CceEEEecHHHHHHHHhCCeEEEeCCCeEEe-cceeecCHHHccC-
Confidence 799999999999999888753 4 3578887711100000000100 0 00000 0011235556554
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 008629 378 IKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 418 (559)
Q Consensus 378 vkPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 418 (559)
.+|++|=+... ...+++++.++.+ .+..+|+.+.|.-.
T Consensus 68 -~~d~vilavk~--~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 68 -PFDLVILAVKA--YQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred -CCCEEEEEecc--cCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 36766533332 2478999988763 35567888999863
No 162
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=81.16 E-value=4.5 Score=42.59 Aligned_cols=102 Identities=16% Similarity=0.327 Sum_probs=64.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc--ccC-CCCCHHHHhcc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--EHE-PVNNLLDAVKV 377 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~--~~~-~~~~L~e~V~~ 377 (559)
||.|+|||..|..+|-.|+. .|+ .+.+.|+|.+-=..++-.-+|.+.. .|.. +.. ..++ .+.++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~~~a~g~a~DL~~~~-~~~~~~~~~i~~~~-y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGL-----FSEIVLIDVNEGVAEGEALDFHHAT-ALTYSTNTKIRAGD-YDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHHHHHHHhhh-ccCCCCCEEEEECC-HHHhCC
Confidence 68999999999999988764 265 3579999974111111101233221 2221 100 0123 455665
Q ss_pred cCCcEEEeccCCC---CCCC--------------HHHHHHHHcCCCCcEEEecCCCC
Q 008629 378 IKPTILIGSSGVG---RTFT--------------KEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 378 vkPtvLIG~S~~~---g~Ft--------------~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.|++|=+.+.+ | -| +++++.+.+++...|++-.|||.
T Consensus 69 --aDivvitaG~~~kpg-~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPv 122 (307)
T cd05290 69 --ADIIVITAGPSIDPG-NTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPL 122 (307)
T ss_pred --CCEEEECCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcH
Confidence 88888666653 3 23 57788888999999999999997
No 163
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=81.02 E-value=2.1 Score=39.15 Aligned_cols=69 Identities=23% Similarity=0.324 Sum_probs=43.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc--c-cCC-CCCHHHHhc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--E-HEP-VNNLLDAVK 376 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~--~-~~~-~~~L~e~V~ 376 (559)
||+++|+|.-|.-+|+.|+.. |+ ++|.++|.+-+ .. .+|..+ .|.. + ..+ ...+.+.++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-----Gv------~~i~ivD~d~v-~~---~nl~r~--~~~~~~~vG~~Ka~~~~~~l~ 63 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-----GV------GKITLIDFDTV-EL---SNLNRQ--FLARQADIGKPKAEVAARRLN 63 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC------CEEEEEcCCCc-Cc---chhhcc--ccCChhHCCChHHHHHHHHHH
Confidence 689999999999999999774 76 78999998733 22 124322 1221 1 111 124666677
Q ss_pred ccCCcEEEec
Q 008629 377 VIKPTILIGS 386 (559)
Q Consensus 377 ~vkPtvLIG~ 386 (559)
...|.+=|-.
T Consensus 64 ~~~p~v~i~~ 73 (143)
T cd01483 64 ELNPGVNVTA 73 (143)
T ss_pred HHCCCcEEEE
Confidence 6677665543
No 164
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.00 E-value=7.1 Score=41.17 Aligned_cols=86 Identities=20% Similarity=0.326 Sum_probs=67.6
Q ss_pred cchhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCC
Q 008629 276 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 354 (559)
Q Consensus 276 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l 354 (559)
.+-.-+|-+|++.=++..+.+++..++|++|.+. .|.-+|.||.. .|. .+.+|+|+ .
T Consensus 136 ~~~~PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~A-------TVtichs~-------T--- 193 (288)
T PRK14171 136 QGFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLK-----ENC-------SVTICHSK-------T--- 193 (288)
T ss_pred CCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------C---
Confidence 3456778888999999999999999999999764 67778777754 243 35555542 1
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 355 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 355 ~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
++|.+.+++ +|++|-..+.++.+++++|+
T Consensus 194 --------------~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk 222 (288)
T PRK14171 194 --------------HNLSSITSK--ADIVVAAIGSPLKLTAEYFN 222 (288)
T ss_pred --------------CCHHHHHhh--CCEEEEccCCCCccCHHHcC
Confidence 357888886 99999999999999999997
No 165
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.63 E-value=10 Score=41.66 Aligned_cols=118 Identities=16% Similarity=0.238 Sum_probs=62.8
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccc-cCCcCCCchhchhhccccCCCCCHHHHh
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV-SSRKDSLQHFKKPWAHEHEPVNNLLDAV 375 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~-~~R~~~l~~~k~~fA~~~~~~~~L~e~V 375 (559)
+...||+|+|.|-.|+++|++|.. .|. .+.++|.+---. ......|......+. .. ....+-+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~-----~G~-------~V~~~D~~~~~~~~~~~~~l~~~gi~~~---~~-~~~~~~~ 75 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVK-----LGA-------KVTAFDKKSEEELGEVSNELKELGVKLV---LG-ENYLDKL 75 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHH-----CCC-------EEEEECCCCCccchHHHHHHHhCCCEEE---eC-CCChHHh
Confidence 456799999999999999999875 364 577888642000 000000111000110 11 1123334
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCceeCCeee
Q 008629 376 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVF 453 (559)
Q Consensus 376 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~pv~~~G~~~ 453 (559)
+ ++|.+|=.++.+ .-.+++.++.. ..-||+ +.+| -++.+.+.+.|-.||| ||||-
T Consensus 76 ~--~~dlVV~Spgi~-~~~p~~~~a~~--~~i~i~-------s~~e----~~~~~~~~~vIaITGT-------nGKTT 130 (458)
T PRK01710 76 D--GFDVIFKTPSMR-IDSPELVKAKE--EGAYIT-------SEME----EFIKYCPAKVFGVTGS-------DGKTT 130 (458)
T ss_pred c--cCCEEEECCCCC-CCchHHHHHHH--cCCcEE-------echH----HhhhhcCCCEEEEECC-------CCHHH
Confidence 3 478666444433 23455555544 346775 2233 3444445678889998 77653
No 166
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=80.57 E-value=1.8 Score=43.80 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=33.0
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+|++.+|+++|+|..|.-+|+.|+.+ |+ .+|.++|.+
T Consensus 8 ~L~~~~VlVvG~GGvGs~va~~Lar~-----GV------g~i~LvD~D 44 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALARS-----GV------GKLTLIDFD 44 (231)
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 57889999999999999999999764 86 789999987
No 167
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=80.41 E-value=2.1 Score=41.14 Aligned_cols=32 Identities=34% Similarity=0.423 Sum_probs=28.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
||+++|+|..|..||+.|+.. |+ ++|.++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-----GV------GNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999764 76 789999987
No 168
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=80.17 E-value=5.7 Score=40.23 Aligned_cols=100 Identities=15% Similarity=0.185 Sum_probs=55.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccC-CcCCCchhchhhccccCCCCCHHHHhcccC
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 379 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~-R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 379 (559)
||.|+|+|+.|..+|..|... | .+++++|+++=-... +...+.-....+........++.++ + +
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~ 66 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G-------HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G--P 66 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C--C
Confidence 799999999999999888653 4 468888874211000 0001100000000000112345553 3 5
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCC
Q 008629 380 PTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPT 417 (559)
Q Consensus 380 PtvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLSNPt 417 (559)
+|++| ++... .-++++++.++.+. +.-+|+.+.|.-
T Consensus 67 ~d~vi-la~k~-~~~~~~~~~l~~~l~~~~~iv~~~nG~ 103 (304)
T PRK06522 67 QDLVI-LAVKA-YQLPAALPSLAPLLGPDTPVLFLQNGV 103 (304)
T ss_pred CCEEE-Eeccc-ccHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 78777 44333 24799999998643 334667799975
No 169
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=80.05 E-value=1.7 Score=50.34 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=34.8
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCc
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 345 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 345 (559)
.+|++.||+++|||.-|.-+|+.|+.+ |+ ++|.+||.+-+
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~-----GV------g~ItlVD~D~V 373 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGW-----GV------RHITFVDNGKV 373 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCEE
Confidence 467899999999999999999999875 87 79999998743
No 170
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=79.82 E-value=10 Score=40.24 Aligned_cols=135 Identities=18% Similarity=0.187 Sum_probs=77.8
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCcc--ccCCcCCCchhchhhccccCCCCCHHHHhcc
Q 008629 301 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 377 (559)
Q Consensus 301 riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi--~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~ 377 (559)
||.|.|| |.-|..+|..|+. .|+-..+..-.+.|+|.+.-. .+...-+|.+...++........+..+.++.
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~-----~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~ 75 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIAR-----GRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTD 75 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHh-----ccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCC
Confidence 6899999 9999999988764 254100000158999974221 1111112433332222111111255677775
Q ss_pred cCCcEEEeccCCCCC--C------------CHHHHHHHHcCC-CCcEEEecCCCCCCCCCCHHHHhcccCC--cEEEeeC
Q 008629 378 IKPTILIGSSGVGRT--F------------TKEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWSKG--RAIFASG 440 (559)
Q Consensus 378 vkPtvLIG~S~~~g~--F------------t~evv~~Ma~~~-erPIIFaLSNPt~~~EctpedA~~wt~G--~aifAsG 440 (559)
.|++|=+.+.+.. - =+++.+.|.+++ +.-||+-.|||. .+..--+++++.+ +-+|.||
T Consensus 76 --aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~~~sg~~~~~vig~g 150 (324)
T TIGR01758 76 --VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPA---NTNALVLSNYAPSIPPKNFSAL 150 (324)
T ss_pred --CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHcCCCCcceEEEe
Confidence 8888866665421 1 246778888894 899999999998 3444445555532 2278888
Q ss_pred CCCCC
Q 008629 441 SPFDP 445 (559)
Q Consensus 441 SPF~p 445 (559)
+=.+.
T Consensus 151 t~LDs 155 (324)
T TIGR01758 151 TRLDH 155 (324)
T ss_pred eehHH
Confidence 65443
No 171
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.75 E-value=7.1 Score=41.06 Aligned_cols=86 Identities=20% Similarity=0.358 Sum_probs=66.0
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 278 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 278 TaaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
-.-+|-.|++.-++-.|.+|+.+++|++|.+ ..|.-+|.||..- ..|. .+.++.++
T Consensus 137 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~---~~~a-------tVtvchs~------------- 193 (284)
T PRK14193 137 PLPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRR---SENA-------TVTLCHTG------------- 193 (284)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhc---cCCC-------EEEEeCCC-------------
Confidence 3467888899999999999999999999976 4677777777531 0132 34555442
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 357 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 357 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
.++|.+.+++ +|++|-..+.++.++.++|+
T Consensus 194 -----------T~~l~~~~k~--ADIvV~AvGkp~~i~~~~ik 223 (284)
T PRK14193 194 -----------TRDLAAHTRR--ADIIVAAAGVAHLVTADMVK 223 (284)
T ss_pred -----------CCCHHHHHHh--CCEEEEecCCcCccCHHHcC
Confidence 1368888886 99999999999999999997
No 172
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.53 E-value=1 Score=50.61 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.1
Q ss_pred cccceEEEeCcChHHHHHHHHHHHH
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALE 321 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~ 321 (559)
.+.-+|+|+|||-||+..|++|.+.
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~ 37 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDF 37 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHc
Confidence 3455899999999999999999986
No 173
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=79.49 E-value=7.5 Score=42.11 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=21.2
Q ss_pred cccceEEEeCcChHHHHHHHHHHH
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~ 320 (559)
-...||.|+|||+-|+.+|..+..
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~ 32 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGE 32 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHh
Confidence 345799999999999999999976
No 174
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=79.46 E-value=19 Score=36.26 Aligned_cols=95 Identities=12% Similarity=0.198 Sum_probs=52.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCC
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKP 380 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkP 380 (559)
||.|+|+|..|..+++-|... |.. .+.+++.|+. . +........+. ......+..|+++. .
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~-----g~~----~~~i~v~~r~----~---~~~~~l~~~~~-~~~~~~~~~~~~~~--a 62 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTS-----PAD----VSEIIVSPRN----A---QIAARLAERFP-KVRIAKDNQAVVDR--S 62 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhC-----CCC----hheEEEECCC----H---HHHHHHHHHcC-CceEeCCHHHHHHh--C
Confidence 699999999999999988653 532 2446666642 1 11222222221 01112467777764 5
Q ss_pred cEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 381 TILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 381 tvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
|++| ++..+.. -+++++... ..+..+|+.++-++
T Consensus 63 DvVi-lav~p~~-~~~vl~~l~-~~~~~~vis~~ag~ 96 (258)
T PRK06476 63 DVVF-LAVRPQI-AEEVLRALR-FRPGQTVISVIAAT 96 (258)
T ss_pred CEEE-EEeCHHH-HHHHHHHhc-cCCCCEEEEECCCC
Confidence 6655 3333322 366666552 33456777766555
No 175
>PRK06141 ornithine cyclodeaminase; Validated
Probab=79.32 E-value=8.5 Score=40.40 Aligned_cols=105 Identities=16% Similarity=0.172 Sum_probs=64.2
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc---cCCCCCHHH
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLLD 373 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~---~~~~~~L~e 373 (559)
....+++|+|+|..|..++..+... .++ ++|+++|+. .++ ...+...+.+. .....++.+
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~----~~~------~~V~V~~Rs----~~~---a~~~a~~~~~~g~~~~~~~~~~~ 185 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASV----RPI------KQVRVWGRD----PAK---AEALAAELRAQGFDAEVVTDLEA 185 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhc----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCceEEeCCHHH
Confidence 3568999999999999998876553 233 678888763 222 23333333211 112367899
Q ss_pred HhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEec-CCCCCCCCCCHHH
Q 008629 374 AVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEE 426 (559)
Q Consensus 374 ~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~~Ectped 426 (559)
+++. .|++|-++..+ .+|+.+.++ +.-.|-+. |++..+-|+.++-
T Consensus 186 av~~--aDIVi~aT~s~~pvl~~~~l~------~g~~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 186 AVRQ--ADIISCATLSTEPLVRGEWLK------PGTHLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred HHhc--CCEEEEeeCCCCCEecHHHcC------CCCEEEeeCCCCcccccCCHHH
Confidence 9975 99998776543 346666553 22244444 4455677888753
No 176
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.30 E-value=9.5 Score=39.09 Aligned_cols=32 Identities=34% Similarity=0.527 Sum_probs=26.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+||.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-----GY-------DVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----CC-------eEEEEeCC
Confidence 6899999999999999988753 53 58888864
No 177
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.27 E-value=12 Score=39.60 Aligned_cols=88 Identities=18% Similarity=0.260 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 278 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 278 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
-.-+|-.|++.=++-.+.+|+.+++|++|.+. .|.-+|.||.. .|.+. .-.+.+|.|+
T Consensus 136 ~~PcTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~~~~---~aTVtvchs~------------- 194 (293)
T PRK14185 136 FVSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQ-----KAYPG---DCTVTVCHSR------------- 194 (293)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHc-----CCCCC---CCEEEEecCC-------------
Confidence 34667888888899999999999999999764 57777777753 23210 0123344332
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 357 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 357 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
.++|.+.+++ +|++|-..+.++.++.++|+
T Consensus 195 -----------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 224 (293)
T PRK14185 195 -----------SKNLKKECLE--ADIIIAALGQPEFVKADMVK 224 (293)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1368888885 99999999999999999997
No 178
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=79.18 E-value=2.9 Score=39.10 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=25.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
+|||+|+|.||+..|..|.. .| .++.++|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-----~~-------~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-----PG-------AKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----TT-------SEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhc-----CC-------CeEEEEeccc
Confidence 69999999999999999983 24 4688887643
No 179
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=79.04 E-value=16 Score=38.61 Aligned_cols=140 Identities=14% Similarity=0.104 Sum_probs=83.1
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHH
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 374 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~ 374 (559)
..++++++.|+|.|..|..+|+.+... |+ +++.+|+.. .. .+... .+ ....+|.|+
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~af-----G~-------~V~~~~~~~----~~---~~~~~-~~----~~~~~l~e~ 187 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTW-----GF-------PLRCWSRSR----KS---WPGVQ-SF----AGREELSAF 187 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCCC----CC---CCCce-ee----cccccHHHH
Confidence 468899999999999999999999753 65 477777631 11 11111 11 123579999
Q ss_pred hcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHh--cccCCcEEEeeCCCCCCcee
Q 008629 375 VKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY--TWSKGRAIFASGSPFDPFEY 448 (559)
Q Consensus 375 V~~vkPtvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~--~wt~G~aifAsGSPF~pv~~ 448 (559)
++. .|+++=+-. .-+.|+++.++.|. +..++.=.| +.++--|+|+ ....|+.-.|.--=|++--.
T Consensus 188 l~~--aDvvv~~lPlt~~T~~li~~~~l~~mk---~ga~lIN~a----RG~vVde~aL~~aL~~g~i~gaalDVf~~EPl 258 (312)
T PRK15469 188 LSQ--TRVLINLLPNTPETVGIINQQLLEQLP---DGAYLLNLA----RGVHVVEDDLLAALDSGKVKGAMLDVFSREPL 258 (312)
T ss_pred Hhc--CCEEEECCCCCHHHHHHhHHHHHhcCC---CCcEEEECC----CccccCHHHHHHHHhcCCeeeEEecCCCCCCC
Confidence 986 888873321 12578888888886 455666554 4666666655 22456654433222321111
Q ss_pred CCeeeCccCccccccchhhH
Q 008629 449 NGKVFVPGQANNAYIFPGFG 468 (559)
Q Consensus 449 ~G~~~~p~Q~NN~yiFPGlg 468 (559)
... ..-=+..|+++-|=+|
T Consensus 259 ~~~-~pl~~~~nvi~TPHia 277 (312)
T PRK15469 259 PPE-SPLWQHPRVAITPHVA 277 (312)
T ss_pred CCC-ChhhcCCCeEECCcCC
Confidence 000 0011446888888776
No 180
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=79.02 E-value=3.9 Score=45.58 Aligned_cols=48 Identities=25% Similarity=0.360 Sum_probs=37.0
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 284 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 284 Agll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.|++.+++..|.++++.+++|+|+|.+|.+++..+.. .|. +++++|+.
T Consensus 317 ~G~~~~l~~~~~~~~~k~vlIiGaGgiG~aia~~L~~-----~G~-------~V~i~~R~ 364 (477)
T PRK09310 317 EGLFSLLKQKNIPLNNQHVAIVGAGGAAKAIATTLAR-----AGA-------ELLIFNRT 364 (477)
T ss_pred HHHHHHHHhcCCCcCCCEEEEEcCcHHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 4678888888889999999999999777777776654 353 57777753
No 181
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=79.01 E-value=4.5 Score=41.25 Aligned_cols=57 Identities=21% Similarity=0.304 Sum_probs=37.9
Q ss_pred CCCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 267 THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 267 ~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+..-+|-|-. |++.+++..+...+..+++|+|+|.+|..++..+.+ .| .+++++|+.
T Consensus 93 ~l~g~NTD~~--------G~~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~-----~g-------~~v~v~~R~ 149 (270)
T TIGR00507 93 KLVGYNTDGI--------GLVSDLERLIPLRPNQRVLIIGAGGAARAVALPLLK-----AD-------CNVIIANRT 149 (270)
T ss_pred EEEEEcCCHH--------HHHHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 4556676643 445555544455667899999999888777776654 24 368888763
No 182
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.98 E-value=9.6 Score=40.16 Aligned_cols=85 Identities=21% Similarity=0.404 Sum_probs=66.1
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+-.-+|-+|++.=++-.|.+|+..++|++|.+. .|.-+|.||.. .|. .+.+++|+
T Consensus 135 ~~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~a-------tVtichs~------------ 190 (284)
T PRK14170 135 SFVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLN-----ENA-------TVTIAHSR------------ 190 (284)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC------------
Confidence 345677888899999999999999999999764 57777777753 242 35555442
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
.++|.+.++. +|++|-..+.++.|++++|+
T Consensus 191 ------------T~~l~~~~~~--ADIvI~AvG~~~~i~~~~vk 220 (284)
T PRK14170 191 ------------TKDLPQVAKE--ADILVVATGLAKFVKKDYIK 220 (284)
T ss_pred ------------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1347788886 99999999999999999997
No 183
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=78.55 E-value=0.92 Score=54.97 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=34.3
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+|++.||+++|||.-|+-+++.|+.+ |+.-. ...+|.++|-+
T Consensus 415 ~kL~~~kVlvvGaGGlG~e~lknLal~-----Gv~~~-~~G~i~IvD~D 457 (1008)
T TIGR01408 415 QKLQNLNIFLVGCGAIGCEMLKNFALM-----GVGTG-KKGMITVTDPD 457 (1008)
T ss_pred HHHhhCcEEEECCChHHHHHHHHHHHh-----CCCcC-CCCeEEEECCC
Confidence 467889999999999999999999875 65211 13689999987
No 184
>PLN03139 formate dehydrogenase; Provisional
Probab=78.23 E-value=15 Score=40.11 Aligned_cols=141 Identities=17% Similarity=0.109 Sum_probs=84.7
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHH
Q 008629 294 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 373 (559)
Q Consensus 294 g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e 373 (559)
+..|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+... . .+ . .+..-+ ....+|.|
T Consensus 194 ~~~L~gktVGIVG~G~IG~~vA~~L~af-----G~-------~V~~~d~~~~---~-~~-~--~~~~g~---~~~~~l~e 251 (386)
T PLN03139 194 AYDLEGKTVGTVGAGRIGRLLLQRLKPF-----NC-------NLLYHDRLKM---D-PE-L--EKETGA---KFEEDLDA 251 (386)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHHHC-----CC-------EEEEECCCCc---c-hh-h--HhhcCc---eecCCHHH
Confidence 4568999999999999999999999753 65 4777887532 0 01 0 110001 11247999
Q ss_pred HhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc-c-cCCcEEEeeCCCCCCce
Q 008629 374 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT-W-SKGRAIFASGSPFDPFE 447 (559)
Q Consensus 374 ~V~~vkPtvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~-w-t~G~aifAsGSPF~pv~ 447 (559)
+++. .|+++=..- .-++|+++.+..|. +.-+++=.|. .++--|+|+. . ..|+.-.|..-=|.+--
T Consensus 252 ll~~--sDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~iVDe~AL~~AL~sG~l~GAaLDV~~~EP 322 (386)
T PLN03139 252 MLPK--CDVVVINTPLTEKTRGMFNKERIAKMK---KGVLIVNNAR----GAIMDTQAVADACSSGHIGGYGGDVWYPQP 322 (386)
T ss_pred HHhh--CCEEEEeCCCCHHHHHHhCHHHHhhCC---CCeEEEECCC----CchhhHHHHHHHHHcCCceEEEEcCCCCCC
Confidence 9976 888773321 12689999999996 5567765544 5555554442 2 35666555543332211
Q ss_pred e--CCeeeCccCccccccchhhH
Q 008629 448 Y--NGKVFVPGQANNAYIFPGFG 468 (559)
Q Consensus 448 ~--~G~~~~p~Q~NN~yiFPGlg 468 (559)
. +. .--+..|+.+-|=++
T Consensus 323 lp~d~---pL~~~pNvilTPHia 342 (386)
T PLN03139 323 APKDH---PWRYMPNHAMTPHIS 342 (386)
T ss_pred CCCCC---hhhcCCCeEEccccc
Confidence 1 11 001345888888776
No 185
>PRK05442 malate dehydrogenase; Provisional
Probab=78.22 E-value=13 Score=39.59 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=64.4
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCcc--ccCCcCCCchhchhhccccCCCCCHHHHhcc
Q 008629 301 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 377 (559)
Q Consensus 301 riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi--~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~ 377 (559)
||.|+|| |..|..+|-.|+.. |+-...-...|.|+|.+.=. .++-.-+|.+...++-+...-..+..+.++.
T Consensus 6 KV~IiGaaG~VG~~~a~~l~~~-----~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~d 80 (326)
T PRK05442 6 RVAVTGAAGQIGYSLLFRIASG-----DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKD 80 (326)
T ss_pred EEEEECCCcHHHHHHHHHHHhh-----hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCC
Confidence 8999998 99999988776653 33100001279999985311 0111112433332332211111355677775
Q ss_pred cCCcEEEeccCC---CCC-----------CCHHHHHHHHcCC-CCcEEEecCCCC
Q 008629 378 IKPTILIGSSGV---GRT-----------FTKEVIEAMASFN-EKPLILALSNPT 417 (559)
Q Consensus 378 vkPtvLIG~S~~---~g~-----------Ft~evv~~Ma~~~-erPIIFaLSNPt 417 (559)
.|++|=+.+. +|- .=+++.+.+.+++ ...||+-.|||.
T Consensus 81 --aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv 133 (326)
T PRK05442 81 --ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA 133 (326)
T ss_pred --CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence 8888755443 331 2245667777866 699999999998
No 186
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=78.10 E-value=18 Score=36.54 Aligned_cols=47 Identities=36% Similarity=0.462 Sum_probs=29.3
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcc
Q 008629 284 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 342 (559)
Q Consensus 284 Agll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~ 342 (559)
+..+.|++..+. ..+.+++|+|+|+.|...+.+.. + .|. ++++.+|+
T Consensus 107 ~ta~~al~~~~~-~~g~~VlV~G~G~vG~~~~~~ak-~----~G~------~~Vi~~~~ 153 (280)
T TIGR03366 107 ATVMAALEAAGD-LKGRRVLVVGAGMLGLTAAAAAA-A----AGA------ARVVAADP 153 (280)
T ss_pred HHHHHHHHhccC-CCCCEEEEECCCHHHHHHHHHHH-H----cCC------CEEEEECC
Confidence 334556655544 37889999999877655544432 2 364 46777764
No 187
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=78.02 E-value=10 Score=39.18 Aligned_cols=93 Identities=15% Similarity=0.229 Sum_probs=56.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc-cCCCCCHHHHhccc-
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVI- 378 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~-~~~~~~L~e~V~~v- 378 (559)
||.|+|.|..|..+|..|... |. +++++|+.. .+ .+. ++.. .....++.|+++..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-----g~-------~v~v~dr~~----~~---~~~----~~~~g~~~~~~~~e~~~~~~ 58 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-----GH-------EVVGYDRNP----EA---VEA----LAEEGATGADSLEELVAKLP 58 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-----CC-------eEEEEECCH----HH---HHH----HHHCCCeecCCHHHHHhhcC
Confidence 799999999999999998753 53 577777741 11 111 2111 11234677877765
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHc-CCCCcEEEecCCCC
Q 008629 379 KPTILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNPT 417 (559)
Q Consensus 379 kPtvLIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLSNPt 417 (559)
+||++|=+- ..+...++++..+.. ..+..||+-+|+-.
T Consensus 59 ~~dvvi~~v-~~~~~~~~v~~~l~~~l~~g~ivid~st~~ 97 (301)
T PRK09599 59 APRVVWLMV-PAGEITDATIDELAPLLSPGDIVIDGGNSY 97 (301)
T ss_pred CCCEEEEEe-cCCcHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 366655332 233356667665543 34567888887633
No 188
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.91 E-value=8.9 Score=40.61 Aligned_cols=97 Identities=19% Similarity=0.267 Sum_probs=70.0
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+-.-+|-.|++.=++-.|.+++.++++++|.+. .|.-+|.||.. .|+. ....+.++.|+
T Consensus 139 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~---~~atVtv~hs~------------ 198 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQ-----KGPG---ANATVTIVHTR------------ 198 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHh-----cccC---CCCEEEEecCC------------
Confidence 345667888888899999999999999999764 56777777653 2321 01235555443
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEec
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 413 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 413 (559)
.++|.+.+++ +|++|-..+.++.++.++|+ +.-||+=-
T Consensus 199 ------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik------~gavVIDv 236 (297)
T PRK14168 199 ------------SKNLARHCQR--ADILIVAAGVPNLVKPEWIK------PGATVIDV 236 (297)
T ss_pred ------------CcCHHHHHhh--CCEEEEecCCcCccCHHHcC------CCCEEEec
Confidence 1358888886 99999999999999999997 44555443
No 189
>PRK06153 hypothetical protein; Provisional
Probab=77.72 E-value=4.2 Score=44.58 Aligned_cols=101 Identities=15% Similarity=0.232 Sum_probs=62.5
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc--C---CCC
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--E---PVN 369 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~--~---~~~ 369 (559)
.+|++.||+|+|+|..|--|+++|+.. |+ ++|.++|.+ .|..+ +|+..---|-.+. . ...
T Consensus 172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~-----GV------geI~LVD~D-~Ve~S---NLnRQ~gaf~~~DvGk~~~KVe 236 (393)
T PRK06153 172 AKLEGQRIAIIGLGGTGSYILDLVAKT-----PV------REIHLFDGD-DFLQH---NAFRSPGAASIEELREAPKKVD 236 (393)
T ss_pred HHHhhCcEEEEcCCccHHHHHHHHHHc-----CC------CEEEEECCC-Eeccc---ccccccccCCHhHcCCcchHHH
Confidence 578899999999999999999999874 76 789999998 22221 2432210111110 1 112
Q ss_pred CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEe-cCCCC
Q 008629 370 NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA-LSNPT 417 (559)
Q Consensus 370 ~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa-LSNPt 417 (559)
-+.+.++..+|.+ ......++++-+..+. +-.+||- +=|..
T Consensus 237 vaa~rl~~in~~I----~~~~~~I~~~n~~~L~---~~DiV~dcvDn~~ 278 (393)
T PRK06153 237 YFKSRYSNMRRGI----VPHPEYIDEDNVDELD---GFTFVFVCVDKGS 278 (393)
T ss_pred HHHHHHHHhCCeE----EEEeecCCHHHHHHhc---CCCEEEEcCCCHH
Confidence 3666667667754 2334457888777653 4556663 44444
No 190
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=77.67 E-value=21 Score=37.58 Aligned_cols=135 Identities=13% Similarity=0.188 Sum_probs=86.8
Q ss_pred CCCCeeecCC---cchhHHHHHHHHHHHHHh------------------------CCCcccceEEEeCcChHHHHHHHHH
Q 008629 266 TTHLVFNDDI---QGTASVVLAGVVAALKLI------------------------GGTLAEHRFLFLGAGEAGTGIAELI 318 (559)
Q Consensus 266 ~~~~~FnDDi---QGTaaV~LAgll~Alr~~------------------------g~~l~d~riv~~GAGsAgiGia~ll 318 (559)
..+.+.|--- ..+|=-+++-+|+..|-. +..|.++++.|+|-|..|-.+|+++
T Consensus 85 ~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~ 164 (311)
T PRK08410 85 KGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIA 164 (311)
T ss_pred CCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHH
Confidence 4555555321 234555667777666532 2468999999999999999999988
Q ss_pred HHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEec----cCCCCCCC
Q 008629 319 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTFT 394 (559)
Q Consensus 319 ~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~----S~~~g~Ft 394 (559)
.. + |+ +|+.+|+.+- .. + . .| ...+|.|+++. .|+++=. ...-+.|+
T Consensus 165 ~~-f----gm-------~V~~~d~~~~---~~-~----~--~~-----~~~~l~ell~~--sDvv~lh~Plt~~T~~li~ 215 (311)
T PRK08410 165 QA-F----GA-------KVVYYSTSGK---NK-N----E--EY-----ERVSLEELLKT--SDIISIHAPLNEKTKNLIA 215 (311)
T ss_pred hh-c----CC-------EEEEECCCcc---cc-c----c--Cc-----eeecHHHHhhc--CCEEEEeCCCCchhhcccC
Confidence 54 2 65 5888888521 10 0 0 11 12479999986 8888743 12237999
Q ss_pred HHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc--cCCcEE
Q 008629 395 KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW--SKGRAI 436 (559)
Q Consensus 395 ~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~w--t~G~ai 436 (559)
++.++.|. +..++.=.| +.++-=|+|+-. ..|+.-
T Consensus 216 ~~~~~~Mk---~~a~lIN~a----RG~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 216 YKELKLLK---DGAILINVG----RGGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred HHHHHhCC---CCeEEEECC----CccccCHHHHHHHHHcCCeE
Confidence 99999997 666777554 456665655432 456654
No 191
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.31 E-value=16 Score=38.43 Aligned_cols=85 Identities=22% Similarity=0.321 Sum_probs=66.0
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+-.-+|-.|++.=++-.|.+++.+++|++|.+. .|--+|.||.. .|. .+.++.|+ +
T Consensus 134 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------tVtichs~-------T---- 190 (282)
T PRK14169 134 TVVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVN-----HDA-------TVTIAHSK-------T---- 190 (282)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEECCC-------C----
Confidence 345678888899999999999999999999764 67777777754 243 34555432 1
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
.+|.+.+++ +|++|-..+.++.|+.++|+
T Consensus 191 -------------~~l~~~~~~--ADIvI~AvG~p~~i~~~~vk 219 (282)
T PRK14169 191 -------------RNLKQLTKE--ADILVVAVGVPHFIGADAVK 219 (282)
T ss_pred -------------CCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 258888886 99999999999999999997
No 192
>PRK06487 glycerate dehydrogenase; Provisional
Probab=77.11 E-value=18 Score=38.16 Aligned_cols=157 Identities=15% Similarity=0.125 Sum_probs=92.0
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHH
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 374 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~ 374 (559)
..|.++++.|+|.|..|-.||+++... |+ +++.+|+.+ ..+ . + ...+|.|+
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~~f-----gm-------~V~~~~~~~-----~~~-------~-~----~~~~l~el 194 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAEAF-----GM-------RVLIGQLPG-----RPA-------R-P----DRLPLDEL 194 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhC-----CC-------EEEEECCCC-----Ccc-------c-c----cccCHHHH
Confidence 368899999999999999999998642 65 577777642 100 0 0 12379999
Q ss_pred hcccCCcEEEec----cCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc--ccCCcEEEeeCCCCC--Cc
Q 008629 375 VKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT--WSKGRAIFASGSPFD--PF 446 (559)
Q Consensus 375 V~~vkPtvLIG~----S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~--wt~G~aifAsGSPF~--pv 446 (559)
++. .|+++=. ...-|.|+++.+..|. +..++.=.|. .++--|+|+. ..+|+.-.|.=-=|. |.
T Consensus 195 l~~--sDiv~l~lPlt~~T~~li~~~~~~~mk---~ga~lIN~aR----G~vVde~AL~~AL~~g~i~gAaLDVf~~EP~ 265 (317)
T PRK06487 195 LPQ--VDALTLHCPLTEHTRHLIGARELALMK---PGALLINTAR----GGLVDEQALADALRSGHLGGAATDVLSVEPP 265 (317)
T ss_pred HHh--CCEEEECCCCChHHhcCcCHHHHhcCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeeEEEeecCCCCCC
Confidence 986 8988732 2224799999999996 6667775554 5555555542 246665444211111 11
Q ss_pred eeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhcc
Q 008629 447 EYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQV 495 (559)
Q Consensus 447 ~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v 495 (559)
. .+..+.--+..|+++-|=++-.... -.+.|...+++.|....
T Consensus 266 ~-~~~pl~~~~~pnvilTPHia~~t~e-----~~~~~~~~~~~ni~~~~ 308 (317)
T PRK06487 266 V-NGNPLLAPDIPRLIVTPHSAWGSRE-----ARQRIVGQLAENARAFF 308 (317)
T ss_pred C-CCCchhhcCCCCEEECCccccCCHH-----HHHHHHHHHHHHHHHHH
Confidence 1 1111110035689999988732221 22344555555555544
No 193
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=76.96 E-value=8.5 Score=43.29 Aligned_cols=97 Identities=16% Similarity=0.116 Sum_probs=53.8
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC---CCCC-----CHHHHhccc------CCcEEEeeCCCC
Q 008629 378 IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS---QSEC-----TAEEAYTWS------KGRAIFASGSPF 443 (559)
Q Consensus 378 vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~---~~Ec-----tpedA~~wt------~G~aifAsGSPF 443 (559)
.+|+++|...+. .++.+-+.+-.++-+|=+-+-.-||-. ..|+ |.++++++. =|+..+-.|
T Consensus 112 ~~~~ailasntS--tl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~--- 186 (507)
T PRK08268 112 VSPDCILATNTS--SLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTPVRAK--- 186 (507)
T ss_pred CCCCcEEEECCC--CCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEec---
Confidence 478888874332 234443333333334446777777653 2222 344444431 122222222
Q ss_pred CCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHH
Q 008629 444 DPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS 488 (559)
Q Consensus 444 ~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA 488 (559)
..||-.+|-..+|.+.=+..+...--++.+-+..+.
T Consensus 187 ---------d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al 222 (507)
T PRK08268 187 ---------DTPGFIVNRAARPYYTEALRVLEEGVADPATIDAIL 222 (507)
T ss_pred ---------CCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 346789999999988888777766666666666554
No 194
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=76.84 E-value=7.7 Score=40.93 Aligned_cols=125 Identities=18% Similarity=0.277 Sum_probs=75.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc--CCCCCHHHHhcc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 377 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~--~~~~~L~e~V~~ 377 (559)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|.+-=..++-.-+|.+.. +|.... ....+.++ ++.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~-----~~~-----~~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~~~v~~~~dy~~-~~~ 71 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILA-----KGL-----ADELVLVDVVEDKLKGEAMDLQHGS-AFLKNPKIEADKDYSV-TAN 71 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHHHHHHHhh-ccCCCCEEEECCCHHH-hCC
Confidence 599999999999998887754 365 3679999974101111001133222 232211 11134554 664
Q ss_pred cCCcEEEeccCC---CCCCCH------------HHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--CCcEEEeeC
Q 008629 378 IKPTILIGSSGV---GRTFTK------------EVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASG 440 (559)
Q Consensus 378 vkPtvLIG~S~~---~g~Ft~------------evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt--~G~aifAsG 440 (559)
.|++|=+.+. +| -|. ++++.|.+++..-+|+-.|||.. ....-+++++ .-+-+|++|
T Consensus 72 --adivvitaG~~~k~g-~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d---~~t~~~~k~sg~p~~~viG~g 145 (312)
T cd05293 72 --SKVVIVTAGARQNEG-ESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVD---IMTYVAWKLSGLPKHRVIGSG 145 (312)
T ss_pred --CCEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHH---HHHHHHHHHhCCCHHHEEecC
Confidence 8988755544 23 333 67788889999999999999983 4444455542 113467776
Q ss_pred CC
Q 008629 441 SP 442 (559)
Q Consensus 441 SP 442 (559)
+-
T Consensus 146 t~ 147 (312)
T cd05293 146 CN 147 (312)
T ss_pred ch
Confidence 53
No 195
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=76.82 E-value=1.2 Score=49.81 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.3
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHH
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~ 320 (559)
+...+-||||+|||.||++.|.-|++
T Consensus 17 ~~~~~~kIvIIGAG~AGLaAA~rLle 42 (498)
T KOG0685|consen 17 KARGNAKIVIIGAGIAGLAAATRLLE 42 (498)
T ss_pred hccCCceEEEECCchHHHHHHHHHHH
Confidence 34556699999999999999999984
No 196
>PRK07680 late competence protein ComER; Validated
Probab=76.73 E-value=4.9 Score=40.83 Aligned_cols=98 Identities=12% Similarity=0.248 Sum_probs=58.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCC
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKP 380 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkP 380 (559)
+|.|+|+|..|..++..|... |.- ...+++++|++ .. ........|. ......+..++++. +
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~-----g~~---~~~~v~v~~r~----~~---~~~~~~~~~~-g~~~~~~~~~~~~~--a 63 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLES-----GAV---KPSQLTITNRT----PA---KAYHIKERYP-GIHVAKTIEEVISQ--S 63 (273)
T ss_pred EEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----HH---HHHHHHHHcC-CeEEECCHHHHHHh--C
Confidence 699999999999999888653 420 12457777764 11 1211111110 00112467777764 7
Q ss_pred cEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 008629 381 TILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 418 (559)
Q Consensus 381 tvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 418 (559)
|++| ++..+ ...+++++.++.+ .+..+|..++|+.+
T Consensus 64 DiVi-lav~p-~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 64 DLIF-ICVKP-LDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred CEEE-EecCH-HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 8776 33333 3467888887654 34568889998763
No 197
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.66 E-value=8.8 Score=41.48 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=28.1
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
++..+++|.|+|..|.++|+.+.+ .|. ++++.|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~-----~G~-------~V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHK-----LGA-------NVTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHH-----CCC-------EEEEEcCC
Confidence 567899999999999999888775 363 58888864
No 198
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=76.66 E-value=12 Score=39.09 Aligned_cols=106 Identities=13% Similarity=0.220 Sum_probs=60.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcC-CChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTK-APVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 378 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G-~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v 378 (559)
.||.|+|+|..|-.|+.-|+.. | ++ ..+|++.|+. .+........|--.. ..+..++++.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~-----g~~~----~~~I~v~~~~-------~e~~~~l~~~~g~~~--~~~~~~~~~~- 62 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKS-----GALP----PEEIIVTNRS-------EEKRAALAAEYGVVT--TTDNQEAVEE- 62 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhc-----CCCC----cceEEEeCCC-------HHHHHHHHHHcCCcc--cCcHHHHHhh-
Confidence 5899999999998888877763 5 32 3678777663 111223333442111 3456666664
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC
Q 008629 379 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK 432 (559)
Q Consensus 379 kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~ 432 (559)
.|+++ ++-.| ..=+++++.+....+..+|..+.=.. +.++.-.|.+
T Consensus 63 -advv~-LavKP-q~~~~vl~~l~~~~~~~lvISiaAGv-----~~~~l~~~l~ 108 (266)
T COG0345 63 -ADVVF-LAVKP-QDLEEVLSKLKPLTKDKLVISIAAGV-----SIETLERLLG 108 (266)
T ss_pred -CCEEE-EEeCh-HhHHHHHHHhhcccCCCEEEEEeCCC-----CHHHHHHHcC
Confidence 66666 55444 23346666665444555555554333 4555555543
No 199
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=76.55 E-value=14 Score=38.81 Aligned_cols=105 Identities=16% Similarity=0.196 Sum_probs=67.5
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc----cCCCCCHHH
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 373 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~----~~~~~~L~e 373 (559)
.-.++.|+|+|.=|..-++.++.. ..+ ++|.+.|+. .+ +...+...+.+. .....+++|
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v----~~i------~~v~v~~r~----~~---~a~~f~~~~~~~~~~~v~~~~~~~e 178 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASV----YNP------KRIRVYSRN----FD---HARAFAERFSKEFGVDIRPVDNAEA 178 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCC------CEEEEECCC----HH---HHHHHHHHHHHhcCCcEEEeCCHHH
Confidence 458999999999888777666653 234 678888764 22 233343333321 122468999
Q ss_pred HhcccCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcEEEec-CCCCCCCCCCHHHH
Q 008629 374 AVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEEA 427 (559)
Q Consensus 374 ~V~~vkPtvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~~EctpedA 427 (559)
+++. .||++-+++. ..+|..++++. .--|-++ |+--.+.|+.++-.
T Consensus 179 av~~--aDIV~taT~s~~P~~~~~~l~p------g~hV~aiGs~~p~~~El~~~~l 226 (301)
T PRK06407 179 ALRD--ADTITSITNSDTPIFNRKYLGD------EYHVNLAGSNYPNRREAEHSVL 226 (301)
T ss_pred HHhc--CCEEEEecCCCCcEecHHHcCC------CceEEecCCCCCCcccCCHHHH
Confidence 9986 9999976533 34788888862 3345555 33335799998743
No 200
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=76.43 E-value=10 Score=40.35 Aligned_cols=91 Identities=14% Similarity=0.194 Sum_probs=59.3
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHH
Q 008629 294 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 373 (559)
Q Consensus 294 g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e 373 (559)
|..|.+.+|.|+|.|..|..+|+.+.. .|. +++.+|+.. +. .. .+.+ ...+|.|
T Consensus 141 ~~~l~g~~VgIIG~G~IG~~vA~~L~~-----~G~-------~V~~~d~~~----~~---~~----~~~~---~~~~l~e 194 (330)
T PRK12480 141 SKPVKNMTVAIIGTGRIGAATAKIYAG-----FGA-------TITAYDAYP----NK---DL----DFLT---YKDSVKE 194 (330)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHh-----CCC-------EEEEEeCCh----hH---hh----hhhh---ccCCHHH
Confidence 456889999999999999999998864 264 588888641 10 11 1111 1247888
Q ss_pred HhcccCCcEEEecc-CC---CCCCCHHHHHHHHcCCCCcEEEecCC
Q 008629 374 AVKVIKPTILIGSS-GV---GRTFTKEVIEAMASFNEKPLILALSN 415 (559)
Q Consensus 374 ~V~~vkPtvLIG~S-~~---~g~Ft~evv~~Ma~~~erPIIFaLSN 415 (559)
+++. .|+++=.- .. -+.|+++++..|. +..++.-.|.
T Consensus 195 ll~~--aDiVil~lP~t~~t~~li~~~~l~~mk---~gavlIN~aR 235 (330)
T PRK12480 195 AIKD--ADIISLHVPANKESYHLFDKAMFDHVK---KGAILVNAAR 235 (330)
T ss_pred HHhc--CCEEEEeCCCcHHHHHHHhHHHHhcCC---CCcEEEEcCC
Confidence 8885 78776332 11 1567777888775 5566665544
No 201
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=75.53 E-value=11 Score=41.62 Aligned_cols=83 Identities=13% Similarity=0.036 Sum_probs=46.9
Q ss_pred HHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCC
Q 008629 288 AALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP 367 (559)
Q Consensus 288 ~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~ 367 (559)
.++.-....|...|++++|-+.-..++++.+.+ .|+.. ..+..-+..... ..+... .-+. .+
T Consensus 300 ~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l~e-----lGm~v----~~~~~~~~~~~~-----~~~~~~-~~~~---~D 361 (432)
T TIGR01285 300 DAMLDTHFFLGGKKVAIAAEPDLLAAWATFFTS-----MGAQI----VAAVTTTGSPLL-----QKLPVE-TVVI---GD 361 (432)
T ss_pred HHHHHHHHhhCCCEEEEEcCHHHHHHHHHHHHH-----CCCEE----EEEEeCCCCHHH-----HhCCcC-cEEe---CC
Confidence 344444456678999999988888999999764 48732 111111111000 001111 1111 12
Q ss_pred CCCHHHHhcccCCcEEEeccC
Q 008629 368 VNNLLDAVKVIKPTILIGSSG 388 (559)
Q Consensus 368 ~~~L~e~V~~vkPtvLIG~S~ 388 (559)
...|++.++..+||++||-|-
T Consensus 362 ~~~l~~~i~~~~~dliig~s~ 382 (432)
T TIGR01285 362 LEDLEDLACAAGADLLITNSH 382 (432)
T ss_pred HHHHHHHHhhcCCCEEEECcc
Confidence 235788888889999998664
No 202
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.38 E-value=12 Score=41.28 Aligned_cols=36 Identities=28% Similarity=0.466 Sum_probs=28.7
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+...||+|+|+|-+|.++|+.+.. .|. ++.+.|++
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~-----~G~-------~V~~~D~~ 47 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSE-----LGC-------DVVVADDN 47 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHH-----CCC-------EEEEECCC
Confidence 3566899999999999999999865 363 57888864
No 203
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=75.37 E-value=42 Score=34.27 Aligned_cols=98 Identities=16% Similarity=0.233 Sum_probs=54.5
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcC-CChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcc
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTK-APVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 377 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G-~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~ 377 (559)
-.||.|+|+|.-|..||+.|... | +. ..+++++|+. .. +.+...+..|- .....+..|+++.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~-----g~~~----~~~v~v~~r~----~~--~~~~~l~~~~g--~~~~~~~~e~~~~ 65 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHA-----NVVK----GEQITVSNRS----NE--TRLQELHQKYG--VKGTHNKKELLTD 65 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----CCCC----cceEEEECCC----CH--HHHHHHHHhcC--ceEeCCHHHHHhc
Confidence 35899999999999999988653 4 21 1456666642 10 11222222221 1112456677664
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCC
Q 008629 378 IKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 417 (559)
Q Consensus 378 vkPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt 417 (559)
.|++| ++-.+ -..+++++.+... .+..+|.-+++-+
T Consensus 66 --aDvVi-lav~p-~~~~~vl~~l~~~~~~~~liIs~~aGi 102 (279)
T PRK07679 66 --ANILF-LAMKP-KDVAEALIPFKEYIHNNQLIISLLAGV 102 (279)
T ss_pred --CCEEE-EEeCH-HHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 66655 33333 2355666666543 3456777766554
No 204
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=75.37 E-value=15 Score=38.46 Aligned_cols=103 Identities=24% Similarity=0.331 Sum_probs=62.7
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC---ccccCCcCCCchhchhhcccc--CCCCCHHHH
Q 008629 301 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG---LIVSSRKDSLQHFKKPWAHEH--EPVNNLLDA 374 (559)
Q Consensus 301 riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G---Li~~~R~~~l~~~k~~fA~~~--~~~~~L~e~ 374 (559)
||.|+|| |..|..+|..++. .|+ ...+.++|++- .+...+.+ +.+....+.... ....+. +.
T Consensus 2 kI~IiGatG~vG~~~a~~l~~-----~g~-----~~~v~lvd~~~~~~~l~~~~~d-l~d~~~~~~~~~~i~~~~d~-~~ 69 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAK-----EDV-----VKEINLISRPKSLEKLKGLRLD-IYDALAAAGIDAEIKISSDL-SD 69 (309)
T ss_pred EEEEECCCChHHHHHHHHHHh-----CCC-----CCEEEEEECcccccccccccch-hhhchhccCCCcEEEECCCH-HH
Confidence 7999998 9999999998775 365 24799999842 11111111 211100000000 001243 44
Q ss_pred hcccCCcEEEeccCCC---C-----------CCCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 375 VKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 375 V~~vkPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
++. .|++|=+.+.+ | .+-+++++.|.+++...+|+--+||.
T Consensus 70 l~~--aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npv 124 (309)
T cd05294 70 VAG--SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPV 124 (309)
T ss_pred hCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCch
Confidence 665 88887665532 1 23567788888899999999999997
No 205
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=74.93 E-value=53 Score=37.18 Aligned_cols=195 Identities=14% Similarity=0.120 Sum_probs=110.0
Q ss_pred CCCCeeecCC---cchhHHHHHHHHHHHHH------------------hCCCcccceEEEeCcChHHHHHHHHHHHHHHH
Q 008629 266 TTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 324 (559)
Q Consensus 266 ~~~~~FnDDi---QGTaaV~LAgll~Alr~------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~ 324 (559)
..+++.|-.- +.+|=-+++-+|+..|- .|..|.++++.|+|.|..|..+|+.+...
T Consensus 86 ~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 162 (526)
T PRK13581 86 RGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAF--- 162 (526)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 4566666421 12445566777766653 24568899999999999999999998653
Q ss_pred hcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHHH
Q 008629 325 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIEA 400 (559)
Q Consensus 325 ~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~----~~g~Ft~evv~~ 400 (559)
|+ +++.+|+.. ...+ ..... -...+|.|+++. .|+++=.-. .-+.|+++.+..
T Consensus 163 --G~-------~V~~~d~~~--~~~~---~~~~g-------~~~~~l~ell~~--aDiV~l~lP~t~~t~~li~~~~l~~ 219 (526)
T PRK13581 163 --GM-------KVIAYDPYI--SPER---AAQLG-------VELVSLDELLAR--ADFITLHTPLTPETRGLIGAEELAK 219 (526)
T ss_pred --CC-------EEEEECCCC--ChhH---HHhcC-------CEEEcHHHHHhh--CCEEEEccCCChHhhcCcCHHHHhc
Confidence 65 588888742 1110 00000 011268898885 788764322 236899999999
Q ss_pred HHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccC
Q 008629 401 MASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVH 480 (559)
Q Consensus 401 Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~It 480 (559)
|. +..++.=.|.-.---|.---+|+ ..|+.-.|.=-=|++--..... -=+..|+.+-|=+|-....+ .
T Consensus 220 mk---~ga~lIN~aRG~~vde~aL~~aL--~~g~i~gAaLDVf~~EP~~~~p--L~~~~nvilTPHia~~t~e~-----~ 287 (526)
T PRK13581 220 MK---PGVRIINCARGGIIDEAALAEAL--KSGKVAGAALDVFEKEPPTDSP--LFELPNVVVTPHLGASTAEA-----Q 287 (526)
T ss_pred CC---CCeEEEECCCCceeCHHHHHHHH--hcCCeeEEEEecCCCCCCCCch--hhcCCCeeEcCccccchHHH-----H
Confidence 86 66777766664432233333333 3566543321111100000111 12346899999887543332 2
Q ss_pred HHHHHHHHHHHHhccCcc
Q 008629 481 DDMLLAASEALAKQVTEE 498 (559)
Q Consensus 481 d~m~~aAA~aLA~~v~~~ 498 (559)
..|...+++.+......+
T Consensus 288 ~~~~~~~~~ni~~~~~g~ 305 (526)
T PRK13581 288 ENVAIQVAEQVIDALRGG 305 (526)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 455566666666665443
No 206
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=74.70 E-value=18 Score=38.29 Aligned_cols=104 Identities=14% Similarity=0.120 Sum_probs=66.2
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc---CCCCCHHHH
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 374 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~---~~~~~L~e~ 374 (559)
.-.++.|+|+|.-|-.-++.+... . . -++|+++|+. .++ ...+...+.+.. ....+..|+
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~--~--~------~~~v~V~~r~----~~~---~~~~~~~~~~~g~~v~~~~~~~ea 189 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRV--F--D------LEEVSVYCRT----PST---REKFALRASDYEVPVRAATDPREA 189 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc--C--C------CCEEEEECCC----HHH---HHHHHHHHHhhCCcEEEeCCHHHH
Confidence 358899999999876655544331 1 2 2788888874 222 222322222111 124689999
Q ss_pred hcccCCcEEEecc-CCCCCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHH
Q 008629 375 VKVIKPTILIGSS-GVGRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEE 426 (559)
Q Consensus 375 V~~vkPtvLIG~S-~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~Ectped 426 (559)
++. .|++|-++ +....|..++++ +..-|-++.-.+ .+.|+.++-
T Consensus 190 v~~--aDiVitaT~s~~P~~~~~~l~------~g~~v~~vGs~~p~~~Eld~~~ 235 (325)
T TIGR02371 190 VEG--CDILVTTTPSRKPVVKADWVS------EGTHINAIGADAPGKQELDPEI 235 (325)
T ss_pred hcc--CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCcccccCCHHH
Confidence 985 89998665 333578888875 566788887544 378999864
No 207
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.52 E-value=14 Score=39.09 Aligned_cols=89 Identities=24% Similarity=0.365 Sum_probs=65.8
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+-.-+|-.|++.=++-.|.+|+.+++|++|-+. .|.-+|.||.. .|.+. ...+.++.++
T Consensus 131 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~~---~AtVtvchs~------------ 190 (287)
T PRK14181 131 GFIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQ-----KHPDT---NATVTLLHSQ------------ 190 (287)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHh-----CcCCC---CCEEEEeCCC------------
Confidence 345678888899999999999999999999764 57777777754 22210 0134443331
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
.++|.+.+++ +|++|-..+.++.+++++|+
T Consensus 191 ------------T~~l~~~~~~--ADIvV~AvG~p~~i~~~~ik 220 (287)
T PRK14181 191 ------------SENLTEILKT--ADIIIAAIGVPLFIKEEMIA 220 (287)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1358888886 99999999999999999997
No 208
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.14 E-value=19 Score=38.23 Aligned_cols=87 Identities=14% Similarity=0.274 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchh
Q 008629 279 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 357 (559)
Q Consensus 279 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~ 357 (559)
.-+|-.|++.=++-.|.+++.++++++|.+. -|--+|.||.. .+.. ....+.++.++
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~---~~aTVtvchs~-------------- 194 (297)
T PRK14167 137 KPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQ-----KADG---GNATVTVCHSR-------------- 194 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhc-----CccC---CCCEEEEeCCC--------------
Confidence 4578888899999999999999999999764 57777777753 1110 00124444332
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 358 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 358 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 195 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 224 (297)
T PRK14167 195 ----------TDDLAAKTRR--ADIVVAAAGVPELIDGSMLS 224 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1358888886 99999999999999999997
No 209
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.83 E-value=15 Score=38.58 Aligned_cols=86 Identities=19% Similarity=0.252 Sum_probs=66.3
Q ss_pred cchhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCC
Q 008629 276 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 354 (559)
Q Consensus 276 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l 354 (559)
.+-.-+|-.|++.=++-.|.+|+..++|++|.+. .|--+|.||.. .|. .+.+++++ .
T Consensus 135 ~~~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------TVt~chs~-------T--- 192 (282)
T PRK14180 135 KCLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLN-----AKA-------TVTTCHRF-------T--- 192 (282)
T ss_pred CCcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEEcCC-------C---
Confidence 3446778889999999999999999999999764 67778777753 243 34555442 1
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 355 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 355 ~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
++|.+.+++ +|++|-..+.++.|++++|+
T Consensus 193 --------------~dl~~~~k~--ADIvIsAvGkp~~i~~~~vk 221 (282)
T PRK14180 193 --------------TDLKSHTTK--ADILIVAVGKPNFITADMVK 221 (282)
T ss_pred --------------CCHHHHhhh--cCEEEEccCCcCcCCHHHcC
Confidence 256666775 99999999999999999997
No 210
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=73.81 E-value=8.4 Score=40.75 Aligned_cols=130 Identities=19% Similarity=0.340 Sum_probs=78.6
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC-ccccCCcCCCchhchhhccccCC--CCCH
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG-LIVSSRKDSLQHFKKPWAHEHEP--VNNL 371 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G-Li~~~R~~~l~~~k~~fA~~~~~--~~~L 371 (559)
++.+..||.++|+|..|+.+|-.|+. .|++ +++.++|-.= .+.-...| |+ |-.+|-+...- .++.
T Consensus 16 ~~~~~~KItVVG~G~VGmAca~siL~-----k~La-----del~lvDv~~dklkGE~MD-Lq-H~s~f~~~~~V~~~~Dy 83 (332)
T KOG1495|consen 16 KEFKHNKITVVGVGQVGMACAISILL-----KGLA-----DELVLVDVNEDKLKGEMMD-LQ-HGSAFLSTPNVVASKDY 83 (332)
T ss_pred ccccCceEEEEccchHHHHHHHHHHH-----hhhh-----hceEEEecCcchhhhhhhh-hc-cccccccCCceEecCcc
Confidence 45668899999999999999988876 3774 6788999641 11111112 43 33455543211 1222
Q ss_pred HHHhcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC-----
Q 008629 372 LDAVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK----- 432 (559)
Q Consensus 372 ~e~V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~----- 432 (559)
... ...++.|=+.+.-+. .=+.+|.++.++.+.-|++-.|||. |.++|--
T Consensus 84 ~~s---a~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPV--------DilTYv~wKLSg 152 (332)
T KOG1495|consen 84 SVS---ANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPV--------DILTYVTWKLSG 152 (332)
T ss_pred ccc---CCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCch--------HHHHHHHHHHcC
Confidence 221 124555544443322 2246777778899999999999999 7766521
Q ss_pred --CcEEEeeCCCCCCce
Q 008629 433 --GRAIFASGSPFDPFE 447 (559)
Q Consensus 433 --G~aifAsGSPF~pv~ 447 (559)
-..+|.||.-.+...
T Consensus 153 fP~nRViGsGcnLDsaR 169 (332)
T KOG1495|consen 153 FPKNRVIGSGCNLDSAR 169 (332)
T ss_pred CcccceeccCcCccHHH
Confidence 134566776655554
No 211
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=73.71 E-value=13 Score=40.43 Aligned_cols=83 Identities=18% Similarity=0.265 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchh
Q 008629 279 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 357 (559)
Q Consensus 279 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~ 357 (559)
.-+|-.|++.-++..+.+++.+++|++|-+. -|.-+|.||.. .|. .+.++.++
T Consensus 211 ~PCTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~-----~~A-------TVTicHs~-------------- 264 (364)
T PLN02616 211 VPCTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQR-----EDA-------TVSIVHSR-------------- 264 (364)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------eEEEeCCC--------------
Confidence 4567778888899999999999999999764 56777777654 242 35555432
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 358 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 358 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
.++|.+.+++ +|++|-..+.++.++.++|+
T Consensus 265 ----------T~nl~~~~r~--ADIVIsAvGkp~~i~~d~vK 294 (364)
T PLN02616 265 ----------TKNPEEITRE--ADIIISAVGQPNMVRGSWIK 294 (364)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCcCCHHHcC
Confidence 1358888886 99999999999999999997
No 212
>PRK07340 ornithine cyclodeaminase; Validated
Probab=73.62 E-value=22 Score=37.24 Aligned_cols=104 Identities=10% Similarity=0.100 Sum_probs=64.2
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCC--CCCHHHH
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP--VNNLLDA 374 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~--~~~L~e~ 374 (559)
....+++|+|+|..|...++.+... .++ ++|+++|+. .++ ...+...+.....+ ..++.|+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~a~~~~~~~~~~~~~~~~~a 185 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAG----LPV------RRVWVRGRT----AAS---AAAFCAHARALGPTAEPLDGEAI 185 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHh----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCeeEECCHHHH
Confidence 3568999999999998888877653 243 578888774 222 22222222211111 3578999
Q ss_pred hcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHH
Q 008629 375 VKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEE 426 (559)
Q Consensus 375 V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~Ectped 426 (559)
++ +.|++|-++... .+|+. .++ +.--|-++.-.+ .+.|+.+|-
T Consensus 186 v~--~aDiVitaT~s~~Pl~~~-~~~------~g~hi~~iGs~~p~~~El~~~~ 230 (304)
T PRK07340 186 PE--AVDLVVTATTSRTPVYPE-AAR------AGRLVVAVGAFTPDMAELAPRT 230 (304)
T ss_pred hh--cCCEEEEccCCCCceeCc-cCC------CCCEEEecCCCCCCcccCCHHH
Confidence 98 499999876543 35654 232 445666665432 478888763
No 213
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=73.42 E-value=15 Score=38.03 Aligned_cols=94 Identities=15% Similarity=0.200 Sum_probs=55.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccC-
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK- 379 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk- 379 (559)
||.|+|.|..|..+|+-+... |. +++++|++ .++ .+..+.. ......++.|+++..+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-----g~-------~v~v~dr~----~~~---~~~~~~~---g~~~~~s~~~~~~~~~~ 59 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-----GH-------EVVGYDVN----QEA---VDVAGKL---GITARHSLEELVSKLEA 59 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECC----HHH---HHHHHHC---CCeecCCHHHHHHhCCC
Confidence 689999999999999988652 53 47777764 111 2211110 1112357788877643
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHc-CCCCcEEEecCCCC
Q 008629 380 PTILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNPT 417 (559)
Q Consensus 380 PtvLIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLSNPt 417 (559)
++++|= +.......+++++.+.. ..+..+|.=+|+-.
T Consensus 60 advVi~-~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~ 97 (299)
T PRK12490 60 PRTIWV-MVPAGEVTESVIKDLYPLLSPGDIVVDGGNSR 97 (299)
T ss_pred CCEEEE-EecCchHHHHHHHHHhccCCCCCEEEECCCCC
Confidence 566653 22233356677666543 34567888887643
No 214
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=73.38 E-value=6.2 Score=35.80 Aligned_cols=96 Identities=18% Similarity=0.188 Sum_probs=48.6
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhccc
Q 008629 300 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 378 (559)
Q Consensus 300 ~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v 378 (559)
.||+++|+ |-.|-.|++.+.+. .|+ +=...+|++.=-..+. ++-+.-........-..+|.++++.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~----~~~------~lv~~v~~~~~~~~g~--d~g~~~~~~~~~~~v~~~l~~~~~~- 67 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES----PGF------ELVGAVDRKPSAKVGK--DVGELAGIGPLGVPVTDDLEELLEE- 67 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS----TTE------EEEEEEETTTSTTTTS--BCHHHCTSST-SSBEBS-HHHHTTH-
T ss_pred CEEEEECCCCHHHHHHHHHHHhc----CCc------EEEEEEecCCcccccc--hhhhhhCcCCcccccchhHHHhccc-
Confidence 38999999 99999999988762 343 3466778775101111 1111100000000112467777776
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEe
Q 008629 379 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 412 (559)
Q Consensus 379 kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 412 (559)
+||+|=.|.+. ...+.++...++ ..|+|..
T Consensus 68 -~DVvIDfT~p~--~~~~~~~~~~~~-g~~~ViG 97 (124)
T PF01113_consen 68 -ADVVIDFTNPD--AVYDNLEYALKH-GVPLVIG 97 (124)
T ss_dssp --SEEEEES-HH--HHHHHHHHHHHH-T-EEEEE
T ss_pred -CCEEEEcCChH--HhHHHHHHHHhC-CCCEEEE
Confidence 77777777432 233444444433 4555553
No 215
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=72.68 E-value=3.2 Score=47.02 Aligned_cols=38 Identities=26% Similarity=0.441 Sum_probs=32.5
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCc
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 345 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 345 (559)
++.-|.+++|||+-|++||+-|+.. |+ ++|.+||.--+
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~W-----Gv------RhITFvDn~kV 375 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDNGKV 375 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhh-----cc------ceEEEEecCee
Confidence 4568999999999999999999987 65 78999997533
No 216
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=72.55 E-value=12 Score=41.22 Aligned_cols=84 Identities=12% Similarity=0.143 Sum_probs=46.1
Q ss_pred HHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcC--CCchhchh--hcc
Q 008629 288 AALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD--SLQHFKKP--WAH 363 (559)
Q Consensus 288 ~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~--~l~~~k~~--fA~ 363 (559)
.++.-....|.+.|+++++.+.-..++++++.+ .|+. +..+.+. .....+ .+...... ...
T Consensus 315 ~~l~~~~~~L~Gkrv~i~~g~~~~~~l~~~l~e-----lGme-------vv~~~t~---~~~~~d~~~l~~~~~~~~~v~ 379 (456)
T TIGR01283 315 PALEPYRERLKGKKAAIYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTEEDYARIRELMGEGTVML 379 (456)
T ss_pred HHHHHHHHHcCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEeee---cCCHHHHHHHHHHcCCCeEEE
Confidence 333344456788999999888888999988754 4872 2222111 111100 01111000 000
Q ss_pred ccCCCCCHHHHhcccCCcEEEec
Q 008629 364 EHEPVNNLLDAVKVIKPTILIGS 386 (559)
Q Consensus 364 ~~~~~~~L~e~V~~vkPtvLIG~ 386 (559)
+..+...+.+.++..+||++||-
T Consensus 380 ~~~d~~e~~~~i~~~~pDl~ig~ 402 (456)
T TIGR01283 380 DDANPRELLKLLLEYKADLLIAG 402 (456)
T ss_pred eCCCHHHHHHHHhhcCCCEEEEc
Confidence 11122358888899999999985
No 217
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=72.32 E-value=16 Score=36.20 Aligned_cols=87 Identities=15% Similarity=0.245 Sum_probs=49.8
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHH-----hcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCH
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISK-----QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNL 371 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~-----~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L 371 (559)
.+++||.|+|.|..+. +|.-+..-|.. +-|+ .-+.+.|..-+++.-- +-..+-..|++. |
T Consensus 39 ~~~~rI~~~G~GgSa~-~A~~~a~~l~~~~~~~r~gl------~a~~l~~d~~~~ta~a--nd~~~~~~f~~q------l 103 (196)
T PRK10886 39 LNGNKILCCGNGTSAA-NAQHFAASMINRFETERPSL------PAIALNTDNVVLTAIA--NDRLHDEVYAKQ------V 103 (196)
T ss_pred HcCCEEEEEECcHHHH-HHHHHHHHHhccccccCCCc------ceEEecCcHHHHHHHh--ccccHHHHHHHH------H
Confidence 4578999999998874 77776665532 1122 2222333322332210 112334445542 3
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHH
Q 008629 372 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMA 402 (559)
Q Consensus 372 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma 402 (559)
.-.. -+-|++|+.|..|. |+++++.+.
T Consensus 104 ~~~~--~~gDvli~iS~SG~--s~~v~~a~~ 130 (196)
T PRK10886 104 RALG--HAGDVLLAISTRGN--SRDIVKAVE 130 (196)
T ss_pred HHcC--CCCCEEEEEeCCCC--CHHHHHHHH
Confidence 3222 25799999999887 899998874
No 218
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=72.27 E-value=11 Score=39.33 Aligned_cols=122 Identities=21% Similarity=0.369 Sum_probs=71.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcC----CCchhchhhccccC-CCCCHHHHh
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHEHE-PVNNLLDAV 375 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~----~l~~~k~~fA~~~~-~~~~L~e~V 375 (559)
||.|+|+|..|..+|-.+.. .|+ ...++++|.+ .++.+ ++.+. .+|-.... ...+. +.+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~-----~g~-----~~ev~l~D~~----~~~~~g~a~dl~~~-~~~~~~~~i~~~d~-~~l 65 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLL-----RGL-----ASEIVLVDIN----KAKAEGEAMDLAHG-TPFVKPVRIYAGDY-ADC 65 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH-----cCC-----CCEEEEEECC----chhhhhHHHHHHcc-ccccCCeEEeeCCH-HHh
Confidence 79999999999999887765 365 3679999974 21111 12211 11211100 01344 446
Q ss_pred cccCCcEEEeccCCCCCC--------------CHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEEee
Q 008629 376 KVIKPTILIGSSGVGRTF--------------TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFAS 439 (559)
Q Consensus 376 ~~vkPtvLIG~S~~~g~F--------------t~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~--G~aifAs 439 (559)
+. .|+.|=+.+.+..- =+++++.+.+++..-+|+-.+||. +....-+++.++ -+-+|.+
T Consensus 66 ~~--aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~---d~~~~~~~~~sg~p~~~viG~ 140 (308)
T cd05292 66 KG--ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPV---DVLTYVAYKLSGLPPNRVIGS 140 (308)
T ss_pred CC--CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHeecc
Confidence 64 77777554443211 146778888899999999999996 444444554431 1336666
Q ss_pred CCCC
Q 008629 440 GSPF 443 (559)
Q Consensus 440 GSPF 443 (559)
|.-.
T Consensus 141 gt~L 144 (308)
T cd05292 141 GTVL 144 (308)
T ss_pred cchh
Confidence 6544
No 219
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.07 E-value=24 Score=37.15 Aligned_cols=83 Identities=19% Similarity=0.261 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchh
Q 008629 279 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 357 (559)
Q Consensus 279 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~ 357 (559)
.-+|-.|++.=++-.+.+++.++++++|-+. -|.-+|.||.. .|. .+.+++++
T Consensus 137 ~PcTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~A-------tVtichs~-------------- 190 (282)
T PRK14182 137 RPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLE-----RHA-------TVTIAHSR-------------- 190 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 4667888899999999999999999999764 57777777653 232 34554332
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 358 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 358 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
.++|.+.+++ +|++|-..+.++.+++++|+
T Consensus 191 ----------T~nl~~~~~~--ADIvI~AvGk~~~i~~~~ik 220 (282)
T PRK14182 191 ----------TADLAGEVGR--ADILVAAIGKAELVKGAWVK 220 (282)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1357778886 99999999999999999997
No 220
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.03 E-value=18 Score=38.12 Aligned_cols=84 Identities=26% Similarity=0.348 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 278 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 278 TaaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
-.-+|-.|++.=++-.|.+++..++|++|.+ ..|.-+|.||.. .|. .+.++.|+ .
T Consensus 134 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------TVtichs~-------T----- 189 (287)
T PRK14173 134 LEPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLR-----EDA-------TVTLAHSK-------T----- 189 (287)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEeCCC-------C-----
Confidence 3466788888889999999999999999975 467778877754 242 35555432 1
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 357 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 357 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
++|.+.+++ +|++|-..+.++.+++++|+
T Consensus 190 ------------~~l~~~~~~--ADIvIsAvGkp~~i~~~~vk 218 (287)
T PRK14173 190 ------------QDLPAVTRR--ADVLVVAVGRPHLITPEMVR 218 (287)
T ss_pred ------------CCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 247888886 99999999999999999997
No 221
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=71.92 E-value=7.4 Score=32.07 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=29.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 347 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~ 347 (559)
|++|+|+|..|+-+|..+... | +++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-----g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-----G-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-----C-------cEEEEEeccchhh
Confidence 799999999999999988552 4 5789998876666
No 222
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=71.90 E-value=3.6 Score=43.14 Aligned_cols=38 Identities=32% Similarity=0.438 Sum_probs=34.0
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
++|++-+|+++|+|..|.-||+.|+.+ |+ ++|.++|.+
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLala-----GV------g~itI~D~d 52 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILA-----GV------KSVTLHDTK 52 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 467889999999999999999999875 87 799999997
No 223
>PLN02527 aspartate carbamoyltransferase
Probab=71.77 E-value=1.3e+02 Score=31.91 Aligned_cols=129 Identities=17% Similarity=0.209 Sum_probs=76.0
Q ss_pred HhhCCCeeeeeccCCCCcHHHHHHHHcCCCCeee--cCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHH
Q 008629 239 QNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN--DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAE 316 (559)
Q Consensus 239 ~~fGp~~lIq~EDf~~~~Af~lL~ryr~~~~~Fn--DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ 316 (559)
.+| .++++ .-.+......+ +.+| .++||.| |+...==.=+||=++.-.+..| ++++.||+++|.+.=+ -+++
T Consensus 94 s~y-~D~iv-iR~~~~~~~~~-~a~~-~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~kva~vGD~~~~-rv~~ 167 (306)
T PLN02527 94 EGY-SDIIV-LRHFESGAARR-AAAT-AEIPVINAGDGPGQHPTQALLDVYTIQREIG-RLDGIKVGLVGDLANG-RTVR 167 (306)
T ss_pred HHh-CcEEE-EECCChhHHHH-HHHh-CCCCEEECCCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCCCC-hhHH
Confidence 446 44433 44444444333 3444 4689999 4343334456777777666666 5999999999988432 2455
Q ss_pred HHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc-C---CCCCHHHHhcccCCcEEEeccCC
Q 008629 317 LIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-E---PVNNLLDAVKVIKPTILIGSSGV 389 (559)
Q Consensus 317 ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~-~---~~~~L~e~V~~vkPtvLIG~S~~ 389 (559)
-++.++.+..|+ .|+++-.+|+- +++....++++. . ...++.|+++. .||+.-.+.+
T Consensus 168 Sl~~~~~~~~g~-------~v~~~~P~~~~-------~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvyt~~~q 228 (306)
T PLN02527 168 SLAYLLAKYEDV-------KIYFVAPDVVK-------MKDDIKDYLTSKGVEWEESSDLMEVASK--CDVLYQTRIQ 228 (306)
T ss_pred HHHHHHHhcCCC-------EEEEECCCccC-------CCHHHHHHHHHcCCEEEEEcCHHHHhCC--CCEEEECCcc
Confidence 555544432254 57888777761 122222333321 1 12589999996 9999987755
No 224
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=71.61 E-value=1.4e+02 Score=33.86 Aligned_cols=195 Identities=17% Similarity=0.139 Sum_probs=108.1
Q ss_pred CCCCeeecCC---cchhHHHHHHHHHHHHH------------------hCCCcccceEEEeCcChHHHHHHHHHHHHHHH
Q 008629 266 TTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 324 (559)
Q Consensus 266 ~~~~~FnDDi---QGTaaV~LAgll~Alr~------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~ 324 (559)
..+++.|--- +.+|=-+++.+|+..|- .|..|.++++.|+|-|..|-.+|+.+...
T Consensus 84 ~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 160 (525)
T TIGR01327 84 RGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAF--- 160 (525)
T ss_pred CCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 4566666321 23444566666665542 25578999999999999999999998642
Q ss_pred hcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHH
Q 008629 325 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEA 400 (559)
Q Consensus 325 ~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~ 400 (559)
|+ +++.+|+.. .... .. .+ ......+|.|+++. .|+++=.- ..-+.|+++.+..
T Consensus 161 --G~-------~V~~~d~~~--~~~~---~~----~~--g~~~~~~l~ell~~--aDvV~l~lPlt~~T~~li~~~~l~~ 218 (525)
T TIGR01327 161 --GM-------KVLAYDPYI--SPER---AE----QL--GVELVDDLDELLAR--ADFITVHTPLTPETRGLIGAEELAK 218 (525)
T ss_pred --CC-------EEEEECCCC--ChhH---HH----hc--CCEEcCCHHHHHhh--CCEEEEccCCChhhccCcCHHHHhc
Confidence 64 588888741 1110 00 00 00112479998875 88776321 2236889999998
Q ss_pred HHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccC
Q 008629 401 MASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVH 480 (559)
Q Consensus 401 Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~It 480 (559)
|. +..++.=.|.-.---|.---+|+ ..|+.-.|.=-=|++--.... .--+..|+.+-|=+|-....+ .
T Consensus 219 mk---~ga~lIN~aRG~~vde~aL~~aL--~~g~i~gAaLDVf~~EP~~~~--pL~~~~nvi~TPHia~~t~e~-----~ 286 (525)
T TIGR01327 219 MK---KGVIIVNCARGGIIDEAALYEAL--EEGHVRAAALDVFEKEPPTDN--PLFDLDNVIATPHLGASTREA-----Q 286 (525)
T ss_pred CC---CCeEEEEcCCCceeCHHHHHHHH--HcCCeeEEEEecCCCCCCCCC--hhhcCCCeEECCCccccHHHH-----H
Confidence 86 56677766664422233333333 356654442111110000011 112456889999887433332 2
Q ss_pred HHHHHHHHHHHHhccCc
Q 008629 481 DDMLLAASEALAKQVTE 497 (559)
Q Consensus 481 d~m~~aAA~aLA~~v~~ 497 (559)
..|...+++.+-+....
T Consensus 287 ~~~~~~~~~ni~~~~~g 303 (525)
T TIGR01327 287 ENVATQVAEQVLDALKG 303 (525)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 34445555555555543
No 225
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=71.46 E-value=12 Score=40.06 Aligned_cols=108 Identities=21% Similarity=0.375 Sum_probs=67.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc-CccccCCcCCCchhchhhc-ccc--CCCCCHHHHh
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWA-HEH--EPVNNLLDAV 375 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~-GLi~~~R~~~l~~~k~~fA-~~~--~~~~~L~e~V 375 (559)
.||.++|||..|-..|-.|+. .++. +.+.|+|.. +...-...| |.+-. .+. .+. ....+ .+.+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-----~~~~-----~el~LiDi~~~~~~G~a~D-L~~~~-~~~~~~~~i~~~~~-y~~~ 67 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-----QGLG-----SELVLIDINEEKAEGVALD-LSHAA-APLGSDVKITGDGD-YEDL 67 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-----cccc-----ceEEEEEcccccccchhcc-hhhcc-hhccCceEEecCCC-hhhh
Confidence 389999999999888888733 3552 479999987 221111111 33221 121 110 00022 3446
Q ss_pred cccCCcEEEeccCC---CC-----------CCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc
Q 008629 376 KVIKPTILIGSSGV---GR-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW 430 (559)
Q Consensus 376 ~~vkPtvLIG~S~~---~g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~w 430 (559)
+. .|+.|=+.+. || ..-+++.+++++++...||+-.|||. |..+|
T Consensus 68 ~~--aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPv--------D~~ty 126 (313)
T COG0039 68 KG--ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV--------DILTY 126 (313)
T ss_pred cC--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcH--------HHHHH
Confidence 64 7877744443 34 14467888999999999999999999 77776
No 226
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.44 E-value=8.8 Score=37.05 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=23.6
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 296 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 296 ~l~d~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+++.+++|.|| |..|..+++.++ + .|. +++++++.
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~----~-~G~-------~V~~~~r~ 38 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFA----A-EGA-------RVVVTDRN 38 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHH----H-CCC-------EEEEEeCC
Confidence 467789999997 445555555544 3 363 48888875
No 227
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=71.24 E-value=4.6 Score=38.05 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=20.8
Q ss_pred EEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 303 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 303 v~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+|+|||.||+..|-.|.+ .|+ +++.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~-----~g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE-----RGI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHH-----TT---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHh-----CCC------CcEEEEeCC
Confidence 689999999999977755 376 348889987
No 228
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=71.05 E-value=9.4 Score=39.69 Aligned_cols=102 Identities=15% Similarity=0.165 Sum_probs=56.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc-----hhchhhccc-cCCCCCHHH
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ-----HFKKPWAHE-HEPVNNLLD 373 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~-----~~k~~fA~~-~~~~~~L~e 373 (559)
.||.|+|+|..|..+|..+..+ | .+++++|+..-...-+...+. ..+..+... -....++ +
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-----G-------~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~ 69 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-----G-------ADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-A 69 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----C-------CcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-h
Confidence 4799999999999999998763 5 368888874211100000010 000000000 0001233 4
Q ss_pred HhcccCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 008629 374 AVKVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 418 (559)
Q Consensus 374 ~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 418 (559)
+++ ++|++|=+.... ..+++++.+..+ .+..+|..+.|...
T Consensus 70 ~~~--~~D~vil~vk~~--~~~~~~~~l~~~~~~~~iii~~~nG~~ 111 (341)
T PRK08229 70 ALA--TADLVLVTVKSA--ATADAAAALAGHARPGAVVVSFQNGVR 111 (341)
T ss_pred hcc--CCCEEEEEecCc--chHHHHHHHHhhCCCCCEEEEeCCCCC
Confidence 454 478877544323 358888888764 45567888888664
No 229
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=70.91 E-value=31 Score=35.80 Aligned_cols=44 Identities=25% Similarity=0.319 Sum_probs=28.3
Q ss_pred HHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcc
Q 008629 287 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 342 (559)
Q Consensus 287 l~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~ 342 (559)
+.|++..+. ..+++++|.|+|+.|...+.+... .|. ++++.+|+
T Consensus 159 ~~al~~~~~-~~g~~VlV~G~G~vG~~aiqlak~-----~G~------~~Vi~~~~ 202 (343)
T PRK09880 159 IHAAHQAGD-LQGKRVFVSGVGPIGCLIVAAVKT-----LGA------AEIVCADV 202 (343)
T ss_pred HHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHHH-----cCC------cEEEEEeC
Confidence 555554443 368899999999877666544432 364 56777765
No 230
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=70.50 E-value=6 Score=38.21 Aligned_cols=111 Identities=22% Similarity=0.279 Sum_probs=57.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc--------------cC
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--------------HE 366 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~--------------~~ 366 (559)
||.|+|||..|.|||-+++.+ |. ++.++|.+---...-.+.+......+.+. ..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-----G~-------~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~ 68 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-----GY-------EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS 68 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-----TS-------EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE
T ss_pred CEEEEcCCHHHHHHHHHHHhC-----CC-------cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc
Confidence 689999999999999999874 64 68888875221100000011100011000 01
Q ss_pred CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc
Q 008629 367 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW 430 (559)
Q Consensus 367 ~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~w 430 (559)
-..+|.+++ ..|.+|=+-.-.--..+++.+.+.+.+..=.||+ || | +-.+..+.-+.
T Consensus 69 ~~~dl~~~~---~adlViEai~E~l~~K~~~~~~l~~~~~~~~ila-sn-T--Ssl~i~~la~~ 125 (180)
T PF02737_consen 69 FTTDLEEAV---DADLVIEAIPEDLELKQELFAELDEICPPDTILA-SN-T--SSLSISELAAA 125 (180)
T ss_dssp EESSGGGGC---TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEE-E-----SSS-HHHHHTT
T ss_pred cccCHHHHh---hhheehhhccccHHHHHHHHHHHHHHhCCCceEE-ec-C--CCCCHHHHHhc
Confidence 114677766 3788886654433467788888888875555553 44 2 33445554433
No 231
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=70.45 E-value=6.2 Score=42.14 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=28.1
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+..||||+|+|.||+..|+.|.+. |. ..+|.++|..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~-----~~-----~~~I~li~~e 37 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQ-----GF-----TGELHLFSDE 37 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhh-----CC-----CCCEEEeCCC
Confidence 457899999999999999998763 42 2367888764
No 232
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=70.41 E-value=5.3 Score=42.47 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=28.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a-----GV------g~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999875 77 789999986
No 233
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=70.37 E-value=5.5 Score=40.52 Aligned_cols=32 Identities=28% Similarity=0.473 Sum_probs=28.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
||+++|+|..|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~-----Gv------g~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-----GF------GQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999764 77 789999998
No 234
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=70.27 E-value=7.6 Score=41.10 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=19.6
Q ss_pred cceEEEeCcChHHHHHHHHHHH
Q 008629 299 EHRFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~ 320 (559)
..||.|+|||+-|..+|..|.+
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~ 28 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICAR 28 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHH
Confidence 3789999999999999998875
No 235
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=70.07 E-value=7.2 Score=41.00 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=55.3
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc---ccCCCCCHHHHh
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAV 375 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~---~~~~~~~L~e~V 375 (559)
-.++.|+|+|.-|..-++.+... .++ ++|+++|+. ..+ ...+...+.+ +.....++++++
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~----~~i------~~v~v~~r~----~~~---~~~~~~~~~~~~~~v~~~~~~~~av 190 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAV----RPI------KEVRVYSRS----PER---AEAFAARLRDLGVPVVAVDSAEEAV 190 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHH----S--------SEEEEE-SS----HHH---HHHHHHHHHCCCTCEEEESSHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHh----CCc------eEEEEEccC----hhH---HHHHHHhhccccccceeccchhhhc
Confidence 36999999999988877776654 244 789988874 222 2333333332 112236899999
Q ss_pred cccCCcEEEeccCCCC---CCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHH
Q 008629 376 KVIKPTILIGSSGVGR---TFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEE 426 (559)
Q Consensus 376 ~~vkPtvLIG~S~~~g---~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~Ectped 426 (559)
+. .||++.++.... +|+.++++ +.-.|-++.--+ .+.|+.++-
T Consensus 191 ~~--aDii~taT~s~~~~P~~~~~~l~------~g~hi~~iGs~~~~~~El~~~~ 237 (313)
T PF02423_consen 191 RG--ADIIVTATPSTTPAPVFDAEWLK------PGTHINAIGSYTPGMRELDDEL 237 (313)
T ss_dssp TT--SSEEEE----SSEEESB-GGGS-------TT-EEEE-S-SSTTBESB-HHH
T ss_pred cc--CCEEEEccCCCCCCccccHHHcC------CCcEEEEecCCCCchhhcCHHH
Confidence 97 999998765432 68888776 445666666422 346777653
No 236
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=70.06 E-value=4.6 Score=44.88 Aligned_cols=124 Identities=16% Similarity=0.318 Sum_probs=80.3
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc-cCC-----CCCH
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNL 371 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~-~~~-----~~~L 371 (559)
+..||+|+||||.. -.+++...+.+...++ ...|||+|-+ .+|.+-....-+.+.+. ..+ ..++
T Consensus 2 ~~~KI~iIGgGSt~--tp~~v~g~l~~~e~l~----~~el~L~Did----~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~ 71 (442)
T COG1486 2 KKFKIVIIGGGSTY--TPKLLLGDLARTEELP----VRELALYDID----EERLKIIAILAKKLVEEAGAPVKVEATTDR 71 (442)
T ss_pred CcceEEEECCCccc--cHHHHHHHHhcCccCC----cceEEEEeCC----HHHHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 45799999999985 6778877776666665 3689999974 44432111122233322 112 2478
Q ss_pred HHHhcccCCcEEEec--------------------------cCCCCCCC--------HHHHHHHHcCCCCcEEEecCCCC
Q 008629 372 LDAVKVIKPTILIGS--------------------------SGVGRTFT--------KEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 372 ~e~V~~vkPtvLIG~--------------------------S~~~g~Ft--------~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.||++. +|.+|=. .++||.|. -|+++.|-+.|+.--++=.+||-
T Consensus 72 ~eAl~g--AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~ 149 (442)
T COG1486 72 REALEG--ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPA 149 (442)
T ss_pred HHHhcC--CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChH
Confidence 888886 6655422 23334332 47899999999999999999999
Q ss_pred CCCCCCHHHHhcccCC-cEE
Q 008629 418 SQSECTAEEAYTWSKG-RAI 436 (559)
Q Consensus 418 ~~~EctpedA~~wt~G-~ai 436 (559)
+++|- -+++|+.+ |.|
T Consensus 150 --~~vTe-Av~r~~~~~K~V 166 (442)
T COG1486 150 --AIVTE-AVRRLYPKIKIV 166 (442)
T ss_pred --HHHHH-HHHHhCCCCcEE
Confidence 77774 34555554 444
No 237
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=70.05 E-value=5.7 Score=39.92 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=24.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 345 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 345 (559)
-+|+|+|||.||+..|-.|... |+ ++.++|++.-
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-----G~-------~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-----GI-------DVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-----TC-------EEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----cc-------ccccchhccc
Confidence 3799999999999999888763 65 3777777533
No 238
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=69.99 E-value=27 Score=37.73 Aligned_cols=123 Identities=14% Similarity=0.125 Sum_probs=69.2
Q ss_pred cccCcchHHHHHhcCCCCCeeEE-EEecCceecccCCCCCccccchhH----HHHHH-hHhcCCCCCc----chhHhHHH
Q 008629 163 SLKEKGKILEVLKNWPERSIQVI-VVTDGERILGLGDLGCQGMGIPVG----KLALY-TALGGIRPSA----EYAELLDE 232 (559)
Q Consensus 163 s~~d~g~i~~~l~nwp~~~v~vi-VVTDG~rILGLGDlG~~GmgI~iG----Kl~LY-~a~gGI~P~~----~y~~~vde 232 (559)
+..|-.++.++|+.. +++++ +++|+ .+--+-..|.+.+-+..+ +++-| ..=-||.... -=.+-.++
T Consensus 165 ~~~d~~el~~lL~~~---Gi~v~~~~~d~-~~~~~~~~~~a~~~~~~~~~~~~~A~~Le~r~giP~~~~~~P~G~~~t~~ 240 (396)
T cd01979 165 PDIVEDQLRRELEQL---GIPVVGFLPPR-RYTDLPVIGPGTYVLGIQPFLSRTATTLMRRRKCKLLSAPFPIGPDGTRA 240 (396)
T ss_pred CcchHHHHHHHHHHc---CCeEEEEeCCC-ChHHhhccCcceEEEEeChhHHHHHHHHHHhcCCCcccCCcCcChHHHHH
Confidence 455666777888765 46665 77875 455555445443333222 22211 1222454332 22345677
Q ss_pred HHHHHHHhhCCCeeeeeccCCCCcHHHHHHHHcCCCCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHH
Q 008629 233 FMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGT 312 (559)
Q Consensus 233 fv~av~~~fGp~~lIq~EDf~~~~Af~lL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgi 312 (559)
|+..+.+.+|. . + +.+++.+. -+.-++......|...|++++|-+.-..
T Consensus 241 ~l~~la~~~g~---~-------~---~~i~~e~~------------------~~~~~l~~~~~~l~Gkrv~i~g~~~~~~ 289 (396)
T cd01979 241 WLEAICSAFGI---F-------P---SVLAEREA------------------RAWRALEPYLDLLRGKSIFFMGDNLLEI 289 (396)
T ss_pred HHHHHHHHhCC---C-------h---hHHHHHHH------------------HHHHHHHHHHHhhcCCEEEEECCchHHH
Confidence 77777777762 0 0 12222211 2334444455566778999999998899
Q ss_pred HHHHHHHH
Q 008629 313 GIAELIAL 320 (559)
Q Consensus 313 Gia~ll~~ 320 (559)
++++.|.+
T Consensus 290 ~la~~L~e 297 (396)
T cd01979 290 PLARFLTR 297 (396)
T ss_pred HHHHHHHH
Confidence 99999886
No 239
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=69.75 E-value=18 Score=38.17 Aligned_cols=130 Identities=17% Similarity=0.273 Sum_probs=87.7
Q ss_pred HHHHHHHHH-----hhCCCeeeeeccCCCCcHHHHHHHHc--CCCCeeec--------CCcchhHHHHHHHHHHHHHhCC
Q 008629 231 DEFMSAVKQ-----NYGEKVLIQFEDFANHNAFELLAKYG--TTHLVFND--------DIQGTASVVLAGVVAALKLIGG 295 (559)
Q Consensus 231 defv~av~~-----~fGp~~lIq~EDf~~~~Af~lL~ryr--~~~~~FnD--------DiQGTaaV~LAgll~Alr~~g~ 295 (559)
+|+.+.+.+ .. -..+||+==...-+...+|+.-. +++==||- ...+--.+|-+|++--++-.+.
T Consensus 74 ~eLl~~I~~lN~D~~v-~GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~~i 152 (283)
T COG0190 74 EELLALIDELNADPEV-DGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEYGI 152 (283)
T ss_pred HHHHHHHHHhcCCCCC-cEEEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcCCCCCCCCCHHHHHHHHHHhCC
Confidence 444555543 33 44577775555555666666542 22111111 1444557899999999999999
Q ss_pred CcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHH
Q 008629 296 TLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 374 (559)
Q Consensus 296 ~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~ 374 (559)
+|++.++|++|.+. -|--+|.+|... +. .+.+++|+ .++|.+.
T Consensus 153 ~l~Gk~~vVVGrS~iVGkPla~lL~~~-----na-------TVtvcHs~------------------------T~~l~~~ 196 (283)
T COG0190 153 DLRGKNVVVVGRSNIVGKPLALLLLNA-----NA-------TVTVCHSR------------------------TKDLASI 196 (283)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHhC-----CC-------EEEEEcCC------------------------CCCHHHH
Confidence 99999999999876 466677777652 32 34455443 1357778
Q ss_pred hcccCCcEEEeccCCCCCCCHHHHH
Q 008629 375 VKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 375 V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
+++ +|++|-.-+.++.|+.++|+
T Consensus 197 ~k~--ADIvv~AvG~p~~i~~d~vk 219 (283)
T COG0190 197 TKN--ADIVVVAVGKPHFIKADMVK 219 (283)
T ss_pred hhh--CCEEEEecCCcccccccccc
Confidence 885 99999999999999999987
No 240
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.58 E-value=24 Score=37.49 Aligned_cols=83 Identities=19% Similarity=0.316 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchh
Q 008629 279 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 357 (559)
Q Consensus 279 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~ 357 (559)
.-+|-.|++.=++-.|.+++.+++|++|.+. .|.-+|.||.. .|. .+.++.|+
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~-----~~a-------tVtv~hs~-------------- 191 (297)
T PRK14186 138 RSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLA-----ANA-------TVTIAHSR-------------- 191 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 4567888888899999999999999999764 67778777754 243 34444332
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 358 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 358 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
.++|.+.+++ +|++|-..+.++.|+.++|+
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (297)
T PRK14186 192 ----------TQDLASITRE--ADILVAAAGRPNLIGAEMVK 221 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357788886 99999999999999999997
No 241
>PRK08618 ornithine cyclodeaminase; Validated
Probab=69.34 E-value=22 Score=37.41 Aligned_cols=104 Identities=15% Similarity=0.217 Sum_probs=61.0
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc----cCCCCCHHH
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 373 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~----~~~~~~L~e 373 (559)
...++.|+|+|..|-.++..+... .++ ++|.++|+. .+| ...+...+... .....++++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~~~~~~~~~~~~~~~~~~~~~ 188 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAV----RDI------ERVRVYSRT----FEK---AYAFAQEIQSKFNTEIYVVNSADE 188 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCc------cEEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHH
Confidence 457899999999988777655442 254 678988874 222 22222222211 112467888
Q ss_pred HhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHh
Q 008629 374 AVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAY 428 (559)
Q Consensus 374 ~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~EctpedA~ 428 (559)
+++. .|++|-++..+ ..|+ +.++ +.--|.++-- --.+.|+.+ +.+
T Consensus 189 ~~~~--aDiVi~aT~s~~p~i~-~~l~------~G~hV~~iGs~~p~~~E~~~-~~~ 235 (325)
T PRK08618 189 AIEE--ADIIVTVTNAKTPVFS-EKLK------KGVHINAVGSFMPDMQELPS-EAI 235 (325)
T ss_pred HHhc--CCEEEEccCCCCcchH-HhcC------CCcEEEecCCCCcccccCCH-HHH
Confidence 8875 89988765433 2344 4443 3445666633 224688887 444
No 242
>PRK06823 ornithine cyclodeaminase; Validated
Probab=69.28 E-value=30 Score=36.70 Aligned_cols=105 Identities=10% Similarity=0.113 Sum_probs=68.0
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc---cCCCCCHHHH
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLLDA 374 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~---~~~~~~L~e~ 374 (559)
.-.++.++|+|.-+-..++.++.. ..+ ++|+++|+. .++ ...+...+.+. .....+.+|+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v----~~i------~~v~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~a 189 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV----TDC------RQLWVWGRS----ETA---LEEYRQYAQALGFAVNTTLDAAEV 189 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc----CCC------CEEEEECCC----HHH---HHHHHHHHHhcCCcEEEECCHHHH
Confidence 457999999999988887776653 133 688888774 222 22222222111 1123689999
Q ss_pred hcccCCcEEEeccC-CCCCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHHH
Q 008629 375 VKVIKPTILIGSSG-VGRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEEA 427 (559)
Q Consensus 375 V~~vkPtvLIG~S~-~~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~EctpedA 427 (559)
++. .||++-+++ ...+|..++++ +.-.|-+...-+ .+.|+.++-.
T Consensus 190 v~~--ADIV~taT~s~~P~~~~~~l~------~G~hi~~iGs~~p~~~Eld~~~l 236 (315)
T PRK06823 190 AHA--ANLIVTTTPSREPLLQAEDIQ------PGTHITAVGADSPGKQELDAELV 236 (315)
T ss_pred hcC--CCEEEEecCCCCceeCHHHcC------CCcEEEecCCCCcccccCCHHHH
Confidence 986 999997643 33578888886 555677776433 4789998654
No 243
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=69.07 E-value=1.2e+02 Score=32.39 Aligned_cols=140 Identities=16% Similarity=0.134 Sum_probs=85.4
Q ss_pred HHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC--------CCCCCHHHHhcccCCcEEEee-CC
Q 008629 371 LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS--------QSECTAEEAYTWSKGRAIFAS-GS 441 (559)
Q Consensus 371 L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~--------~~EctpedA~~wt~G~aifAs-GS 441 (559)
+.++=+.++|+++|..++.+ +.-.-+.+=.++-||=|.+=.-||.. ..+.|.+++++-+ ..+..+ |-
T Consensus 101 f~~l~~~~~~~aIlASNTSs--l~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~--~~~~~~igK 176 (307)
T COG1250 101 FAELEALAKPDAILASNTSS--LSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERV--VEFAKKIGK 176 (307)
T ss_pred HHHHHhhcCCCcEEeeccCC--CCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCHHHHHHH--HHHHHHcCC
Confidence 34444556799999987754 33333333335556668888899973 4577877776532 111111 21
Q ss_pred CCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccCccccCCCcccCCCCCccchHHHHHH
Q 008629 442 PFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAA 521 (559)
Q Consensus 442 PF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~ 521 (559)
.||. ..+.||-.=|-...|.+.-+..+..---.|.+.+-++.+.-+.+ . +-|+.-.+-+-..+..
T Consensus 177 --~~vv---~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~------p----mGpf~l~D~~GlD~~~ 241 (307)
T COG1250 177 --TPVV---VKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGL------P----MGPFELADLIGLDVML 241 (307)
T ss_pred --CCEe---ecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCC------C----ccHHHHHHHHhHHHHH
Confidence 1121 35678999999999988888877776667788887776653332 1 2344444555566666
Q ss_pred HHHHHHHH
Q 008629 522 NVAAKAYE 529 (559)
Q Consensus 522 aVa~~A~~ 529 (559)
.|+++.++
T Consensus 242 ~i~~~~~~ 249 (307)
T COG1250 242 HIMKVLNE 249 (307)
T ss_pred HHHHHHHH
Confidence 66666654
No 244
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=69.01 E-value=26 Score=37.84 Aligned_cols=109 Identities=17% Similarity=0.236 Sum_probs=69.6
Q ss_pred chhHHHHHHHHHHHHHh--------------------CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhccc
Q 008629 277 GTASVVLAGVVAALKLI--------------------GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 336 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~--------------------g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~ 336 (559)
-||-++++-+|.++|-- |..+.++||.|+|.|+.|.-||+.|... | .+
T Consensus 120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~F-----g-------~~ 187 (336)
T KOG0069|consen 120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPF-----G-------CV 187 (336)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhc-----c-------ce
Confidence 46777777777777642 3568899999999999999999999763 2 12
Q ss_pred EEEEcccCccccCCcC-CCchhchhhccccCCCCCHHHHhcccCCcEEEeccCC----CCCCCHHHHHHHHcCCCCcEEE
Q 008629 337 ICLVDSKGLIVSSRKD-SLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGV----GRTFTKEVIEAMASFNEKPLIL 411 (559)
Q Consensus 337 i~lvD~~GLi~~~R~~-~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~----~g~Ft~evv~~Ma~~~erPIIF 411 (559)
|. +.+|.. .....+..++. .-++.|...+ .|+++=..-- -++|+++.+..|. +.=+|.
T Consensus 188 i~--------y~~r~~~~~~~~~~~~~~----~~d~~~~~~~--sD~ivv~~pLt~~T~~liNk~~~~~mk---~g~vlV 250 (336)
T KOG0069|consen 188 IL--------YHSRTQLPPEEAYEYYAE----FVDIEELLAN--SDVIVVNCPLTKETRHLINKKFIEKMK---DGAVLV 250 (336)
T ss_pred ee--------eecccCCchhhHHHhccc----ccCHHHHHhh--CCEEEEecCCCHHHHHHhhHHHHHhcC---CCeEEE
Confidence 33 334421 12233344443 2467777764 8888744321 2689999999886 444444
Q ss_pred ecC
Q 008629 412 ALS 414 (559)
Q Consensus 412 aLS 414 (559)
-.+
T Consensus 251 N~a 253 (336)
T KOG0069|consen 251 NTA 253 (336)
T ss_pred ecc
Confidence 333
No 245
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=68.91 E-value=6.5 Score=39.67 Aligned_cols=38 Identities=34% Similarity=0.527 Sum_probs=33.0
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
++|++-|++++|+|.-|.-++..|+.+ |+ ++++++|.+
T Consensus 26 ~~l~~s~vlvvG~GglG~~~~~~la~a-----Gv------g~l~i~D~d 63 (254)
T COG0476 26 QKLKDSRVLVVGAGGLGSPAAKYLALA-----GV------GKLTIVDFD 63 (254)
T ss_pred HHHhhCCEEEEecChhHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 578899999999999999999988875 76 569999987
No 246
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=68.74 E-value=41 Score=35.71 Aligned_cols=141 Identities=15% Similarity=0.191 Sum_probs=80.7
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHH
Q 008629 294 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 373 (559)
Q Consensus 294 g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e 373 (559)
|..|.++++.|+|.|..|..+|+.+..++ |+ ++...|+.. . .+ ....+ .....+|.|
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~~~f----gm-------~V~~~~~~~----~-~~----~~~~~---~~~~~~l~e 196 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAHFGF----NM-------PILYNARRH----H-KE----AEERF---NARYCDLDT 196 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHHhcC----CC-------EEEEECCCC----c-hh----hHHhc---CcEecCHHH
Confidence 45689999999999999999999875332 64 455566531 0 00 00011 011247999
Q ss_pred HhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc-c-cCCcEEEeeCCCCC--C
Q 008629 374 AVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT-W-SKGRAIFASGSPFD--P 445 (559)
Q Consensus 374 ~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~-w-t~G~aifAsGSPF~--p 445 (559)
+++. .|+++=.- ..-|.|+++.++.|. +.-++.=.| +.++--|+|+- + .+|+.-.|.=-=|+ |
T Consensus 197 ll~~--sDvv~lh~plt~~T~~li~~~~l~~mk---~ga~lIN~a----RG~vVde~AL~~AL~~g~i~gAaLDVf~~EP 267 (323)
T PRK15409 197 LLQE--SDFVCIILPLTDETHHLFGAEQFAKMK---SSAIFINAG----RGPVVDENALIAALQKGEIHAAGLDVFEQEP 267 (323)
T ss_pred HHHh--CCEEEEeCCCChHHhhccCHHHHhcCC---CCeEEEECC----CccccCHHHHHHHHHcCCeeEEEeecCCCCC
Confidence 9886 88876321 113789999999996 556666544 45555555442 2 45665433211111 1
Q ss_pred ceeCCeeeCccCccccccchhhHH
Q 008629 446 FEYNGKVFVPGQANNAYIFPGFGL 469 (559)
Q Consensus 446 v~~~G~~~~p~Q~NN~yiFPGlgl 469 (559)
..-+. . -=...|+.+-|=+|-
T Consensus 268 ~~~~~-p--L~~~~nvilTPHia~ 288 (323)
T PRK15409 268 LSVDS-P--LLSLPNVVAVPHIGS 288 (323)
T ss_pred CCCCc-h--hhcCCCEEEcCcCCC
Confidence 10010 0 113458888887763
No 247
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=68.53 E-value=8.5 Score=43.03 Aligned_cols=97 Identities=19% Similarity=0.196 Sum_probs=62.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc---ccCCCCCHHHHhcc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAVKV 377 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~---~~~~~~~L~e~V~~ 377 (559)
+|-|+|.|.-|.++|..|... |. +++++|+. .++ .++....-.. ......++.|+++.
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~-----G~-------~V~v~dr~----~~~---~~~l~~~~~~~g~~i~~~~s~~e~v~~ 63 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASR-----GF-------KISVYNRT----YEK---TEEFVKKAKEGNTRVKGYHTLEELVNS 63 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHC-----CC-------eEEEEeCC----HHH---HHHHHHhhhhcCCcceecCCHHHHHhc
Confidence 689999999999999999763 64 58888763 222 2222111000 01124689999976
Q ss_pred c-CCcEEEeccCCCCCCCHHHHHHHHc-CCCCcEEEecCCCC
Q 008629 378 I-KPTILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNPT 417 (559)
Q Consensus 378 v-kPtvLIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLSNPt 417 (559)
. +|+++| +.-.++...++|++.+.. ..+..||.=+||=.
T Consensus 64 l~~~d~Ii-l~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 64 LKKPRKVI-LLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred CCCCCEEE-EEeCChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 4 588555 344455677888877664 35678898899843
No 248
>PRK06046 alanine dehydrogenase; Validated
Probab=68.50 E-value=28 Score=36.76 Aligned_cols=104 Identities=15% Similarity=0.154 Sum_probs=65.3
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc----cCCCCCHHH
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 373 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~----~~~~~~L~e 373 (559)
.-.++.|+|+|..|...++.+... .++ ++++++|++ .++ .+.+...+... .....++.+
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~----~~i------~~v~v~~r~----~~~---~~~~~~~~~~~~~~~v~~~~~~~~ 190 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEV----FDL------EEVRVYDRT----KSS---AEKFVERMSSVVGCDVTVAEDIEE 190 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhh----CCc------eEEEEECCC----HHH---HHHHHHHHHhhcCceEEEeCCHHH
Confidence 457999999999988777666442 243 788988885 121 22333333211 111357888
Q ss_pred HhcccCCcEEEeccC-CCCCCCHHHHHHHHcCCCCcEEEecC-CCCCCCCCCHHHH
Q 008629 374 AVKVIKPTILIGSSG-VGRTFTKEVIEAMASFNEKPLILALS-NPTSQSECTAEEA 427 (559)
Q Consensus 374 ~V~~vkPtvLIG~S~-~~g~Ft~evv~~Ma~~~erPIIFaLS-NPt~~~EctpedA 427 (559)
+++ .|+++-++. ...+|..++++ +.-.|-++. +-..+.|+.++-.
T Consensus 191 ~l~---aDiVv~aTps~~P~~~~~~l~------~g~hV~~iGs~~p~~~El~~~~~ 237 (326)
T PRK06046 191 ACD---CDILVTTTPSRKPVVKAEWIK------EGTHINAIGADAPGKQELDPEIL 237 (326)
T ss_pred Hhh---CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCCccccCCHHHH
Confidence 885 798887653 33578888875 333466664 4446899998743
No 249
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=68.46 E-value=11 Score=41.99 Aligned_cols=95 Identities=13% Similarity=0.159 Sum_probs=61.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc--cCCCCCHHHHhccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEPVNNLLDAVKVI 378 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~--~~~~~~L~e~V~~v 378 (559)
.|-|+|.|..|..+|..|... |. +++++|+. .+ ..+...+.+... .....++.|+++..
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~v~drt----~~---~~~~l~~~~~~g~~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-----GF-------TVSVYNRT----PE---KTDEFLAEHAKGKKIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-----CC-------eEEEEeCC----HH---HHHHHHhhccCCCCceecCCHHHHHhhc
Confidence 378999999999999999763 63 57777763 21 122222221110 11235788888654
Q ss_pred -CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCC
Q 008629 379 -KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSN 415 (559)
Q Consensus 379 -kPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSN 415 (559)
+|+++| ++-.+|...++|++.+..+ .+..||.=+||
T Consensus 62 ~~~dvIi-l~v~~~~~v~~Vi~~l~~~L~~g~iIID~gn 99 (467)
T TIGR00873 62 ERPRKIM-LMVKAGAPVDAVINQLLPLLEKGDIIIDGGN 99 (467)
T ss_pred CCCCEEE-EECCCcHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 588666 4444556778888887654 56779999988
No 250
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=68.11 E-value=11 Score=42.68 Aligned_cols=38 Identities=29% Similarity=0.470 Sum_probs=27.8
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 294 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 294 g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+..+++.+++|+|||.+|-+|+..|.+ .|. +++++|+.
T Consensus 374 ~~~~~~k~vlIlGaGGagrAia~~L~~-----~G~-------~V~i~nR~ 411 (529)
T PLN02520 374 GSPLAGKLFVVIGAGGAGKALAYGAKE-----KGA-------RVVIANRT 411 (529)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHH-----CCC-------EEEEEcCC
Confidence 446888999999999777666666654 352 68888763
No 251
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=67.73 E-value=6.4 Score=41.46 Aligned_cols=32 Identities=28% Similarity=0.524 Sum_probs=28.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
||+++|+|.-|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~-----Gv------g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-----GF------RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999874 87 699999987
No 252
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=67.17 E-value=19 Score=39.51 Aligned_cols=84 Identities=11% Similarity=0.112 Sum_probs=48.2
Q ss_pred HHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc----
Q 008629 288 AALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---- 363 (559)
Q Consensus 288 ~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~---- 363 (559)
.++.-....|...|+.|+|-..-.+++++.|.+ .|+.. .. +++....+...+.-+.+..
T Consensus 292 ~~~~~~~~~l~gkrv~i~g~~~~~~~la~~L~e-----lGm~v------~~------~~~~~~~~~~~~~~~~~l~~~~~ 354 (435)
T cd01974 292 DAMTDSHQYLHGKKFALYGDPDFLIGLTSFLLE-----LGMEP------VH------VLTGNGGKRFEKEMQALLDASPY 354 (435)
T ss_pred HHHHHHHHhcCCCEEEEEcChHHHHHHHHHHHH-----CCCEE------EE------EEeCCCCHHHHHHHHHHHhhcCC
Confidence 333334456788999999988889999998875 38732 11 1111111100110011111
Q ss_pred -------ccCCCCCHHHHhcccCCcEEEeccC
Q 008629 364 -------EHEPVNNLLDAVKVIKPTILIGSSG 388 (559)
Q Consensus 364 -------~~~~~~~L~e~V~~vkPtvLIG~S~ 388 (559)
...+...+.+.++..+||++||-|.
T Consensus 355 ~~~~~v~~~~d~~e~~~~i~~~~pDliiG~s~ 386 (435)
T cd01974 355 GAGAKVYPGKDLWHLRSLLFTEPVDLLIGNTY 386 (435)
T ss_pred CCCcEEEECCCHHHHHHHHhhcCCCEEEECcc
Confidence 1122235788889999999999775
No 253
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=67.12 E-value=1.4e+02 Score=32.92 Aligned_cols=193 Identities=15% Similarity=0.181 Sum_probs=113.0
Q ss_pred cCCCCeeecCC---cchhHHHHHHHHHHHHH------------------hCCCcccceEEEeCcChHHHHHHHHHHHHHH
Q 008629 265 GTTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEIS 323 (559)
Q Consensus 265 r~~~~~FnDDi---QGTaaV~LAgll~Alr~------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~~~ 323 (559)
+..++++|--- +.+|=-+++.+|+.+|- .|..|.+.++.|+|.|..|-.+|+.+...
T Consensus 96 ~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~f-- 173 (409)
T PRK11790 96 KRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESL-- 173 (409)
T ss_pred hCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHHHHHHHHHC--
Confidence 45777777432 23444567777777653 24568999999999999999999988643
Q ss_pred HhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHH
Q 008629 324 KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIE 399 (559)
Q Consensus 324 ~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~----~~g~Ft~evv~ 399 (559)
|+ +++.+|+.. + ..... + ....+|+|+++. .|+++=.-- .-+.|+++.+.
T Consensus 174 ---Gm-------~V~~~d~~~-----~-~~~~~-----~---~~~~~l~ell~~--sDiVslh~Plt~~T~~li~~~~l~ 227 (409)
T PRK11790 174 ---GM-------RVYFYDIED-----K-LPLGN-----A---RQVGSLEELLAQ--SDVVSLHVPETPSTKNMIGAEELA 227 (409)
T ss_pred ---CC-------EEEEECCCc-----c-cccCC-----c---eecCCHHHHHhh--CCEEEEcCCCChHHhhccCHHHHh
Confidence 65 577788631 1 00100 1 112479999986 888763311 12689999999
Q ss_pred HHHcCCCCcEEEecCCCCCCCCCCHHHHhc--ccCCcEEEeeCCC-C--CCceeCCeee-CccCccccccchhhHHHHHH
Q 008629 400 AMASFNEKPLILALSNPTSQSECTAEEAYT--WSKGRAIFASGSP-F--DPFEYNGKVF-VPGQANNAYIFPGFGLGLVI 473 (559)
Q Consensus 400 ~Ma~~~erPIIFaLSNPt~~~EctpedA~~--wt~G~aifAsGSP-F--~pv~~~G~~~-~p~Q~NN~yiFPGlglG~l~ 473 (559)
.|. +.-++.-.|. .++-=|+|+. ...|+ |.+-|.- | +|..-+.... .--+..|+++-|=+|-...-
T Consensus 228 ~mk---~ga~lIN~aR----G~~vde~aL~~aL~~g~-i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~e 299 (409)
T PRK11790 228 LMK---PGAILINASR----GTVVDIDALADALKSGH-LAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQE 299 (409)
T ss_pred cCC---CCeEEEECCC----CcccCHHHHHHHHHcCC-ceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHH
Confidence 996 5567775554 4555444441 23566 3333321 2 2221110000 11245689999988854333
Q ss_pred hCCcccCHHHHHHHHHHHHhccCcc
Q 008629 474 SGAIRVHDDMLLAASEALAKQVTEE 498 (559)
Q Consensus 474 ~~a~~Itd~m~~aAA~aLA~~v~~~ 498 (559)
+ ...|...+++.+......+
T Consensus 300 a-----~~~~~~~~~~nl~~~~~~~ 319 (409)
T PRK11790 300 A-----QENIGLEVAGKLVKYSDNG 319 (409)
T ss_pred H-----HHHHHHHHHHHHHHHHcCC
Confidence 2 2455566666666665433
No 254
>PLN02602 lactate dehydrogenase
Probab=67.10 E-value=20 Score=38.57 Aligned_cols=123 Identities=20% Similarity=0.324 Sum_probs=74.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCC---CCHHHHhc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV---NNLLDAVK 376 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~---~~L~e~V~ 376 (559)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|..-=..++-.-+|.+.. +|-.. ..+ .+.++ ++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-----~~l-----~~el~LiDi~~~~~~g~a~DL~~~~-~~~~~-~~i~~~~dy~~-~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-----QDL-----ADELALVDVNPDKLRGEMLDLQHAA-AFLPR-TKILASTDYAV-TA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----CCEEEEEeCCCchhhHHHHHHHhhh-hcCCC-CEEEeCCCHHH-hC
Confidence 499999999999999987764 366 3579999974100111001133222 22211 111 24444 55
Q ss_pred ccCCcEEEeccCCC---CCCCH------------HHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEEee
Q 008629 377 VIKPTILIGSSGVG---RTFTK------------EVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFAS 439 (559)
Q Consensus 377 ~vkPtvLIG~S~~~---g~Ft~------------evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~--G~aifAs 439 (559)
. .|++|=+.+.+ | -|. ++++.|.+++..-+|+-.|||. .....-+++++. -+-+|++
T Consensus 105 d--aDiVVitAG~~~k~g-~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv---dv~t~~~~k~sg~p~~rviG~ 178 (350)
T PLN02602 105 G--SDLCIVTAGARQIPG-ESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV---DVLTYVAWKLSGFPANRVIGS 178 (350)
T ss_pred C--CCEEEECCCCCCCcC-CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch---HHHHHHHHHHhCCCHHHEEee
Confidence 4 89888665543 3 233 6788888999999999999998 333344455542 1336666
Q ss_pred CC
Q 008629 440 GS 441 (559)
Q Consensus 440 GS 441 (559)
|.
T Consensus 179 gt 180 (350)
T PLN02602 179 GT 180 (350)
T ss_pred cc
Confidence 64
No 255
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=66.97 E-value=29 Score=42.73 Aligned_cols=114 Identities=17% Similarity=0.247 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCC-------C--cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc------------cc---EEE
Q 008629 284 AGVVAALKLIGG-------T--LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR------------KK---ICL 339 (559)
Q Consensus 284 Agll~Alr~~g~-------~--l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~------------~~---i~l 339 (559)
+.+.+|++..|. | +.--+|||.|+|..|.|.++++...-.+ =++.++-+ ++ +|.
T Consensus 179 ~~~~~a~~~~G~~i~~~g~p~gv~P~~vVi~G~G~Vg~gA~~i~~~lg~~--~v~~~~l~~l~~~~~~~~~~~~~~~~y~ 256 (1042)
T PLN02819 179 AAAKAAVISVGEEIASSGLPLGICPLVFVFTGSGNVSQGAQEIFKLLPHT--FVEPSKLPELKGISQNKISTKRVYQVYG 256 (1042)
T ss_pred HHHHHHHHhccceeeccCCCCCCCCeEEEEeCCchHHHHHHHHHhhcCCC--ccCHHHHHHHHHhhcCCccccccceeee
Confidence 445666655532 2 3458999999999999999988654111 02222211 11 220
Q ss_pred --EcccCcc-ccCCcCCCchhchhhccccCCC-CCHH-HHhcccCCcEEEecc----CCCCCCCHH-HHHHHHc
Q 008629 340 --VDSKGLI-VSSRKDSLQHFKKPWAHEHEPV-NNLL-DAVKVIKPTILIGSS----GVGRTFTKE-VIEAMAS 403 (559)
Q Consensus 340 --vD~~GLi-~~~R~~~l~~~k~~fA~~~~~~-~~L~-e~V~~vkPtvLIG~S----~~~g~Ft~e-vv~~Ma~ 403 (559)
+.+.-.+ +++..... +.+..|+++ +.. ..+. +++.. .|+|||+- ..|.++|++ +++.|..
T Consensus 257 ~~~~~~~~~~~~~~~~~f-~~~~y~~~P-e~y~s~F~~~~~~~--advlIn~i~~~~~~P~lvt~~~~~~~mk~ 326 (1042)
T PLN02819 257 CVVTSQDMVEHKDPSKQF-DKADYYAHP-EHYNPVFHEKIAPY--ASVIVNCMYWEKRFPRLLTTKQLQDLTRK 326 (1042)
T ss_pred eecChHHHhhccCCcccc-chhhhccCc-hhccchhHHHhHhh--CCEEEeeeecCCCCCceeCHHHHHHhhcC
Confidence 1111111 11110001 112233433 222 3444 67775 99999984 335679999 8888874
No 256
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=66.61 E-value=22 Score=38.50 Aligned_cols=84 Identities=17% Similarity=0.228 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 278 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 278 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
-.-+|-.|++.=++-.|.+++.+++|++|-+. .|.-+|.||.. .|. .+.++.++ .
T Consensus 193 ~~PCTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~-----~~A-------TVTicHs~-------T----- 248 (345)
T PLN02897 193 FVSCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQR-----HDA-------TVSTVHAF-------T----- 248 (345)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------EEEEEcCC-------C-----
Confidence 34667888888889999999999999999764 57777777654 243 34444432 1
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 357 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 357 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
++|.+.+++ +|++|-..+.++.|+.++|+
T Consensus 249 ------------~nl~~~~~~--ADIvIsAvGkp~~v~~d~vk 277 (345)
T PLN02897 249 ------------KDPEQITRK--ADIVIAAAGIPNLVRGSWLK 277 (345)
T ss_pred ------------CCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 357788886 99999999999999999997
No 257
>PRK06932 glycerate dehydrogenase; Provisional
Probab=66.46 E-value=26 Score=36.91 Aligned_cols=139 Identities=16% Similarity=0.176 Sum_probs=83.4
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHH
Q 008629 294 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 373 (559)
Q Consensus 294 g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e 373 (559)
+..|.++++.|+|-|..|-.+|+++... |+ +++.+|+..- +.. . ....+|.|
T Consensus 142 ~~~l~gktvgIiG~G~IG~~va~~l~~f-----g~-------~V~~~~~~~~------~~~---~-------~~~~~l~e 193 (314)
T PRK06932 142 ITDVRGSTLGVFGKGCLGTEVGRLAQAL-----GM-------KVLYAEHKGA------SVC---R-------EGYTPFEE 193 (314)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHhcC-----CC-------EEEEECCCcc------ccc---c-------cccCCHHH
Confidence 3468999999999999999999988542 65 4666665310 000 0 01247999
Q ss_pred HhcccCCcEEEec----cCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc--ccCCcEEEeeCCCCC--C
Q 008629 374 AVKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT--WSKGRAIFASGSPFD--P 445 (559)
Q Consensus 374 ~V~~vkPtvLIG~----S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~--wt~G~aifAsGSPF~--p 445 (559)
+++. .|+++=. ...-|.|+++.+..|. +..++.=.|. .++-=|+|+. ..+|+.-.|.--=|. |
T Consensus 194 ll~~--sDiv~l~~Plt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~~Vde~AL~~aL~~g~i~gAaLDV~~~EP 264 (314)
T PRK06932 194 VLKQ--ADIVTLHCPLTETTQNLINAETLALMK---PTAFLINTGR----GPLVDEQALLDALENGKIAGAALDVLVKEP 264 (314)
T ss_pred HHHh--CCEEEEcCCCChHHhcccCHHHHHhCC---CCeEEEECCC----ccccCHHHHHHHHHcCCccEEEEecCCCCC
Confidence 9986 8988842 2224799999999996 6667775554 5555555442 235665444322221 1
Q ss_pred ceeCCeeeC-ccCccccccchhhHH
Q 008629 446 FEYNGKVFV-PGQANNAYIFPGFGL 469 (559)
Q Consensus 446 v~~~G~~~~-p~Q~NN~yiFPGlgl 469 (559)
..-+.--.. --+..|+++-|=+|-
T Consensus 265 ~~~~~pl~~~~~~~pnvilTPHia~ 289 (314)
T PRK06932 265 PEKDNPLIQAAKRLPNLLITPHIAW 289 (314)
T ss_pred CCCCChhhHhhcCCCCEEECCcccc
Confidence 111110000 013578888887763
No 258
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=66.33 E-value=1.3e+02 Score=34.37 Aligned_cols=183 Identities=22% Similarity=0.264 Sum_probs=110.5
Q ss_pred hHhHHHHHHHHHHhhCCCeeeeeccCCCCcHH---HHHHHHcCCC-----C-----ee----ecCCcchhHHHHHHHHHH
Q 008629 227 AELLDEFMSAVKQNYGEKVLIQFEDFANHNAF---ELLAKYGTTH-----L-----VF----NDDIQGTASVVLAGVVAA 289 (559)
Q Consensus 227 ~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af---~lL~ryr~~~-----~-----~F----nDDiQGTaaV~LAgll~A 289 (559)
..+.-.||..+.+--||..=+==+|++ ...+ -+++.|+..+ | .- |+-.--|+-=+..++=+=
T Consensus 161 ~r~~~~f~~el~~~iGp~~DvPapdig-~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~~ATG~GV~~y~e~~ 239 (514)
T KOG2250|consen 161 ERITRRFTDELIDIIGPDTDVPAPDIG-TGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRYEATGRGVVYYVEAI 239 (514)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCccccc-cCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcccccchhHHHHHHHH
Confidence 334455555555566776666667776 3333 3788887421 1 11 444444554444444333
Q ss_pred HHHhC--CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhc-hhhccccC
Q 008629 290 LKLIG--GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-KPWAHEHE 366 (559)
Q Consensus 290 lr~~g--~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k-~~fA~~~~ 366 (559)
+.-.+ +++++.|+++-|-|--|.-.+..|.+. |- +-|-+.|++|.|...- .++..+ ..++....
T Consensus 240 ~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~~-----G~------kvvavsD~~G~l~np~--Gid~~eL~~~~~~k~ 306 (514)
T KOG2250|consen 240 LNDANGKKGIKGKRVVIQGFGNVGGHAAKKLSEK-----GA------KVVAVSDSKGVLINPD--GIDIEELLDLADEKK 306 (514)
T ss_pred HHhccCCCCcCceEEEEeCCCchHHHHHHHHHhc-----CC------EEEEEEcCceeEECCC--CCCHHHHHHHHHhhc
Confidence 44444 789999999999999998888888764 42 6688899999998764 344332 23333222
Q ss_pred CCCCHHHHh--------------cccCCcEEEeccCCCCCCCHHHHHHH-HcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 008629 367 PVNNLLDAV--------------KVIKPTILIGSSGVGRTFTKEVIEAM-ASFNEKPLILALSN-PTSQSECTAEEAYT 429 (559)
Q Consensus 367 ~~~~L~e~V--------------~~vkPtvLIG~S~~~g~Ft~evv~~M-a~~~erPIIFaLSN-Pt~~~EctpedA~~ 429 (559)
.++++.++. -.-+.|+++=+.++ +..|.+=.+.. +++| |+|.==|| ||+ || ++++++
T Consensus 307 ~i~~f~~~~~~~~~~~~~~~~~~~v~~~DI~vPCA~q-n~I~~~nA~~lvak~~--~~IvEGAN~ptT-pe--A~~vle 379 (514)
T KOG2250|consen 307 TIKSFDGAKLSYEGYIAGLPPWTLVEKCDILVPCATQ-NEITGENAKALVAKGC--KYIVEGANMPTT-PE--ADEVLE 379 (514)
T ss_pred cccccccccccCccccccCcchhhHhhCcEEeecCcc-CcccHhhHHHHHhcCC--cEEEecCCCCCC-hh--HHHHHH
Confidence 222222111 11258999999998 67777666554 5656 89998899 553 33 335555
No 259
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=66.27 E-value=44 Score=34.28 Aligned_cols=32 Identities=38% Similarity=0.605 Sum_probs=26.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.||.|+|+|..|.+||..++.+ | .+++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-----G-------~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-----G-------MDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCC
Confidence 5799999999999999998763 5 368888864
No 260
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=66.21 E-value=5 Score=41.65 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=34.0
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCcccc
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVS 348 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~ 348 (559)
+|++++|+++|.|..|--+++.|.. .|+ .+|.++|-+-+=..
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaR-----sGi------g~itlID~D~v~vT 68 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALAR-----SGI------GRITLIDMDDVCVT 68 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHH-----cCC------CeEEEEeccccccc
Confidence 5889999999999888777777665 487 89999999866443
No 261
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=65.77 E-value=17 Score=37.77 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=24.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
||.|+|||+.|..+|..|.+. | .++.+++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-----g-------~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-----K-------ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 699999999999999998763 4 456677764
No 262
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=65.41 E-value=7.5 Score=38.60 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=25.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+++|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~-----~g~-------~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR-----ANL-------KTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CCC-------CEEEEecc
Confidence 68999999999999988754 363 58899975
No 263
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=65.36 E-value=22 Score=36.83 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=26.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.||.|+|+|..|..+|..+... |. ..+++++|++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-----g~-----~~~V~~~dr~ 40 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-----GL-----AGEIVGADRS 40 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CcEEEEEECC
Confidence 6899999999999999888653 53 1368888874
No 264
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=65.34 E-value=17 Score=37.85 Aligned_cols=101 Identities=16% Similarity=0.136 Sum_probs=58.2
Q ss_pred ccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch-h----chhhcc-ccCCCCC
Q 008629 298 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-F----KKPWAH-EHEPVNN 370 (559)
Q Consensus 298 ~d~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~-~----k~~fA~-~~~~~~~ 370 (559)
+..+|+|.|| |-.|-.+++.|++ .| .+++.+|++.- .. ....+ . +..+.. +..+..+
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~-----~G-------~~V~~~~r~~~---~~-~~~~~~~~~~~~~~~~~~Dl~~~~~ 66 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLE-----LG-------AEVYGYSLDPP---TS-PNLFELLNLAKKIEDHFGDIRDAAK 66 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHH-----CC-------CEEEEEeCCCc---cc-hhHHHHHhhcCCceEEEccCCCHHH
Confidence 4578999996 7777777777765 25 35777776521 10 00100 0 011111 2222246
Q ss_pred HHHHhcccCCcEEEeccCCCCC----------------CCHHHHHHHHcCC-CCcEEEecC
Q 008629 371 LLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFN-EKPLILALS 414 (559)
Q Consensus 371 L~e~V~~vkPtvLIG~S~~~g~----------------Ft~evv~~Ma~~~-erPIIFaLS 414 (559)
+.++++..+||++|=+.+.+.. .+..+++++...+ .+.+||.=|
T Consensus 67 ~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 67 LRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred HHHHHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 7788888899999988764311 1345567666544 457888654
No 265
>PRK07877 hypothetical protein; Provisional
Probab=64.73 E-value=15 Score=43.39 Aligned_cols=101 Identities=21% Similarity=0.193 Sum_probs=64.3
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch----------hchhhccc
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH----------FKKPWAHE 364 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~----------~k~~fA~~ 364 (559)
.+|++.||+|+|+| .|.-+|..|+.+ |+ ..+|.++|.+=+ ..+ +|+. .|..-|..
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~Lara-----Gv-----vG~l~lvD~D~v-e~s---NLnRq~~~~~diG~~Kv~~a~~ 167 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAE-----GL-----CGELRLADFDTL-ELS---NLNRVPAGVFDLGVNKAVVAAR 167 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHc-----cC-----CCeEEEEcCCEE-ccc---ccccccCChhhcccHHHHHHHH
Confidence 56889999999998 888888888764 63 268999998733 211 2333 12111110
Q ss_pred -----cCC---------C--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 008629 365 -----HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 414 (559)
Q Consensus 365 -----~~~---------~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 414 (559)
.+. + .++.+.++. .|++|-++-- .=++-+|...|.....|+|++.+
T Consensus 168 ~l~~inp~i~v~~~~~~i~~~n~~~~l~~--~DlVvD~~D~--~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 168 RIAELDPYLPVEVFTDGLTEDNVDAFLDG--LDVVVEECDS--LDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred HHHHHCCCCEEEEEeccCCHHHHHHHhcC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEcC
Confidence 000 1 146666654 7888776652 23666777777777888888775
No 266
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=64.60 E-value=1.1e+02 Score=31.76 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=23.8
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcc
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 342 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~ 342 (559)
..++++|+|+|..|+..+.++... .|- .+++.+|+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~----~g~------~~vi~~~~ 197 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQI----YPE------SKLVVFGK 197 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHh----cCC------CcEEEEeC
Confidence 478999999998776666555432 132 36777775
No 267
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=64.02 E-value=9 Score=40.73 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=28.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
||+++|+|.-|.-+++.|+.+ |+ ++|.++|.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-----Gv------g~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-----GF------GEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-----cC------CeEEEEcCC
Confidence 689999999999999999864 76 789999987
No 268
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=63.89 E-value=6.2 Score=37.11 Aligned_cols=104 Identities=17% Similarity=0.235 Sum_probs=56.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 379 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 379 (559)
.||-|+|.|..|.+||+-|... |. +++.+|+. .+ ..+.....-+ ....++.|+++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-----g~-------~v~~~d~~----~~---~~~~~~~~g~---~~~~s~~e~~~~-- 57 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-----GY-------EVTVYDRS----PE---KAEALAEAGA---EVADSPAEAAEQ-- 57 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-----TT-------EEEEEESS----HH---HHHHHHHTTE---EEESSHHHHHHH--
T ss_pred CEEEEEchHHHHHHHHHHHHhc-----CC-------eEEeeccc----hh---hhhhhHHhhh---hhhhhhhhHhhc--
Confidence 5899999999999999999653 64 57877753 11 1222221112 223689999987
Q ss_pred CcEEEeccCCCCCCCHHHHHH---HHcCCCCcEEEecCCCCCCCCCCHHHHhcc
Q 008629 380 PTILIGSSGVGRTFTKEVIEA---MASFNEKPLILALSNPTSQSECTAEEAYTW 430 (559)
Q Consensus 380 PtvLIG~S~~~g~Ft~evv~~---Ma~~~erPIIFaLSNPt~~~EctpedA~~w 430 (559)
.|++|=+-..+ .=.++++.. .+...+..||.=+|+-+ +|.+-+-+-.+
T Consensus 58 ~dvvi~~v~~~-~~v~~v~~~~~i~~~l~~g~iiid~sT~~--p~~~~~~~~~~ 108 (163)
T PF03446_consen 58 ADVVILCVPDD-DAVEAVLFGENILAGLRPGKIIIDMSTIS--PETSRELAERL 108 (163)
T ss_dssp BSEEEE-SSSH-HHHHHHHHCTTHGGGS-TTEEEEE-SS----HHHHHHHHHHH
T ss_pred ccceEeecccc-hhhhhhhhhhHHhhccccceEEEecCCcc--hhhhhhhhhhh
Confidence 57776432211 123445444 23345666777777755 55555544433
No 269
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=63.79 E-value=11 Score=33.26 Aligned_cols=88 Identities=13% Similarity=0.186 Sum_probs=49.0
Q ss_pred CcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEe
Q 008629 306 GAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIG 385 (559)
Q Consensus 306 GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG 385 (559)
|.|..|.+++++|...-.. -++ +=..++|+++++... ............++.+.++..++|++|=
T Consensus 1 G~G~VG~~l~~~l~~~~~~-~~~------~v~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~dvvVE 65 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER-IDL------EVVGVADRSMLISKD--------WAASFPDEAFTTDLEELIDDPDIDVVVE 65 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH-CEE------EEEEEEESSEEEETT--------HHHHHTHSCEESSHHHHHTHTT-SEEEE
T ss_pred CCCHHHHHHHHHHHhCccc-CCE------EEEEEEECCchhhhh--------hhhhcccccccCCHHHHhcCcCCCEEEE
Confidence 7899999999999764211 011 346677777444432 1111112223468999999888999999
Q ss_pred ccCCCCCCCHHHHHHHHcCCCCcEEE
Q 008629 386 SSGVGRTFTKEVIEAMASFNEKPLIL 411 (559)
Q Consensus 386 ~S~~~g~Ft~evv~~Ma~~~erPIIF 411 (559)
+++ ....++-+.+.+. +..++|-
T Consensus 66 ~t~-~~~~~~~~~~~L~--~G~~VVt 88 (117)
T PF03447_consen 66 CTS-SEAVAEYYEKALE--RGKHVVT 88 (117)
T ss_dssp -SS-CHHHHHHHHHHHH--TTCEEEE
T ss_pred CCC-chHHHHHHHHHHH--CCCeEEE
Confidence 955 3344444444454 2345553
No 270
>PRK06270 homoserine dehydrogenase; Provisional
Probab=63.41 E-value=48 Score=35.31 Aligned_cols=105 Identities=17% Similarity=0.250 Sum_probs=63.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHH---HHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccC---------C
Q 008629 300 HRFLFLGAGEAGTGIAELIALE---ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE---------P 367 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~---~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~---------~ 367 (559)
.||.++|.|..|-+++++|.+. +.++.|+. -+=.-++|++|.+.+.++-++... ..++.+.. .
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~----~~vvai~d~~~~~~~~~Gi~~~~~-~~~~~~~~~~~~~~~~~~ 77 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLD----LKVVAIADSSGSAIDPDGLDLELA-LKVKEETGKLADYPEGGG 77 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCCcccCcCCCCHHHH-HHHHhccCCcccCccccc
Confidence 5899999999999999998753 22222431 122456799998887653112211 12222111 1
Q ss_pred CCCHHHHhcccCCcEEEeccCC---CCCCCHHHH-HHHHcCCCCcEEE
Q 008629 368 VNNLLDAVKVIKPTILIGSSGV---GRTFTKEVI-EAMASFNEKPLIL 411 (559)
Q Consensus 368 ~~~L~e~V~~vkPtvLIG~S~~---~g~Ft~evv-~~Ma~~~erPIIF 411 (559)
..++.|+++...+||+|=++.. ++-...+++ +++. +.++||.
T Consensus 78 ~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~--~GkhVVt 123 (341)
T PRK06270 78 EISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALE--RGKHVVT 123 (341)
T ss_pred cCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHH--CCCEEEc
Confidence 2378999988889999987753 122234554 4444 3578877
No 271
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=62.76 E-value=13 Score=39.56 Aligned_cols=98 Identities=18% Similarity=0.181 Sum_probs=51.1
Q ss_pred cCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcC
Q 008629 273 DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD 352 (559)
Q Consensus 273 DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~ 352 (559)
|+..+.-+=-+|.-+.+.........+.+++|+|||+.|+..+.+... .|. ++|+++|.. .+|
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~-----~Ga------~~Viv~d~~----~~R-- 205 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKL-----LGA------SVVIVVDRS----PER-- 205 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHH-----cCC------ceEEEeCCC----HHH--
Confidence 334444444444444442222222233399999999999776333222 464 689988773 333
Q ss_pred CCchhchhhccc--cCCCC-CHHHHh----cccCCcEEEeccC
Q 008629 353 SLQHFKKPWAHE--HEPVN-NLLDAV----KVIKPTILIGSSG 388 (559)
Q Consensus 353 ~l~~~k~~fA~~--~~~~~-~L~e~V----~~vkPtvLIG~S~ 388 (559)
|+..++.++-+ ..... ...+.+ ..-..|+.|=+|+
T Consensus 206 -l~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 206 -LELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred -HHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 44344333322 11111 222223 2236899999998
No 272
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=62.18 E-value=5 Score=42.71 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHH
Q 008629 300 HRFLFLGAGEAGTGIAELIALE 321 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~ 321 (559)
.+|+|+|||-||+..|..|.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~ 22 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKK 22 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999999874
No 273
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=61.55 E-value=12 Score=35.68 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=29.0
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+|++.|+||+|+|..|.-.++.|+++ | .++.+++.+
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~-----g-------a~V~VIsp~ 45 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDT-----G-------AFVTVVSPE 45 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEcCc
Confidence 57899999999999999988888763 4 367777643
No 274
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=61.51 E-value=17 Score=38.14 Aligned_cols=123 Identities=17% Similarity=0.201 Sum_probs=71.5
Q ss_pred EeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEE
Q 008629 304 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTIL 383 (559)
Q Consensus 304 ~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvL 383 (559)
|+|||..|..+|-+|+. .|+ ...|.|+|.+-=..++-.-+|.+..-.+.++..-..+-.+.++. .|++
T Consensus 1 iIGaG~VG~~~a~~l~~-----~~l-----~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d--aDiv 68 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLN-----QGI-----ADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD--ADLV 68 (299)
T ss_pred CCCcCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC--CCEE
Confidence 57999999999998764 366 25799999742111111111332221111110001123456665 8999
Q ss_pred EeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCC--cEEEeeCC
Q 008629 384 IGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG--RAIFASGS 441 (559)
Q Consensus 384 IG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G--~aifAsGS 441 (559)
|=+.+.+ |- .=+++++.+.+++..-+|+-.|||.. ....-++++++= +-+|.+|.
T Consensus 69 Vitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d---~~t~~~~~~sg~p~~~viG~gt 139 (299)
T TIGR01771 69 VITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVD---ILTYVAWKLSGFPKNRVIGSGT 139 (299)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHH---HHHHHHHHHhCCCHHHEEeccc
Confidence 8666654 21 12467788888999999999999983 444445554411 23666654
No 275
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=61.39 E-value=55 Score=35.14 Aligned_cols=138 Identities=17% Similarity=0.247 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhhCCCeeeeeccCCCCcHHHHHHHHcCCCCeeecC-CcchhHHHHHHHHHHHHHhCCCcccceEEEeCcC
Q 008629 230 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDD-IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAG 308 (559)
Q Consensus 230 vdefv~av~~~fGp~~lIq~EDf~~~~Af~lL~ryr~~~~~FnDD-iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAG 308 (559)
+.+.+..+ .+| .++++ +-.++. .+.+.+.+| .++||+|=+ -.-=-.=+|+=++.-.+..|++|++.||.++|-+
T Consensus 91 l~DTarvl-s~y-~D~iv-~R~~~~-~~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~ 165 (334)
T PRK01713 91 MKDTARVL-GRM-YDAIE-YRGFKQ-SIVNELAEY-AGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDA 165 (334)
T ss_pred HHHHHHHH-HHh-CCEEE-EEcCch-HHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCC
Confidence 33344333 446 55544 333332 233344444 468999942 2222345677777777777778999999999987
Q ss_pred hHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccC----CCCCHHHHhcccCCcEEE
Q 008629 309 EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE----PVNNLLDAVKVIKPTILI 384 (559)
Q Consensus 309 sAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~----~~~~L~e~V~~vkPtvLI 384 (559)
.- ++++-++.++.+ .|+ +|.++-.+++.-.+ .+-+.-+.+++... ...++.++++. .||+.
T Consensus 166 ~~--~v~~Sl~~~~~~-~g~-------~v~~~~P~~~~p~~---~~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvVy 230 (334)
T PRK01713 166 RN--NMGNSLLLIGAK-LGM-------DVRICAPKALLPEA---SLVEMCEKFAKESGARITVTDDIDKAVKG--VDFVH 230 (334)
T ss_pred cc--CHHHHHHHHHHH-cCC-------EEEEECCchhcCCH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEE
Confidence 53 478877777665 475 58888888773321 11111223433211 13689999996 99998
Q ss_pred ecc
Q 008629 385 GSS 387 (559)
Q Consensus 385 G~S 387 (559)
-.+
T Consensus 231 t~~ 233 (334)
T PRK01713 231 TDV 233 (334)
T ss_pred Ecc
Confidence 753
No 276
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=61.08 E-value=9.5 Score=41.00 Aligned_cols=31 Identities=32% Similarity=0.496 Sum_probs=24.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+|+|+|||.||...|..+.. .|+ ++.++|++
T Consensus 2 ~VvIVGaGPAG~~aA~~la~-----~G~-------~V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLAS-----AGI-------QTFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 68999999999999988765 364 46666654
No 277
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=61.04 E-value=10 Score=40.44 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=26.9
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCcc
Q 008629 302 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 346 (559)
Q Consensus 302 iv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi 346 (559)
|+|+|||.||..+|..+.++ ..| .++.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~---~~g-------~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA---RPG-------LSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc---CCC-------CEEEEEcCCccc
Confidence 79999999999999998443 123 578999986443
No 278
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=60.83 E-value=12 Score=37.03 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=28.7
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcc
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 342 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~ 342 (559)
+|++.++||+|+|..|.-.++.|..+ | .+|++++.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~-----g-------a~V~VIs~ 41 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKY-----G-------AHIVVISP 41 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEcC
Confidence 57899999999999998888888763 4 46888865
No 279
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=60.43 E-value=31 Score=40.53 Aligned_cols=107 Identities=16% Similarity=0.113 Sum_probs=62.1
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC--------CCCCCHHHHhcccCCcEEEeeCCCCC
Q 008629 373 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS--------QSECTAEEAYTWSKGRAIFASGSPFD 444 (559)
Q Consensus 373 e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~--------~~EctpedA~~wt~G~aifAsGSPF~ 444 (559)
++=+.++|+++|..++.. ++-.-|.+...+-+|=|.+=.-||.. ..+-|.++..++... |+..-=..
T Consensus 413 ~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~---~~~~lgk~ 487 (715)
T PRK11730 413 EVEQKVREDTILASNTST--ISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVA---YASKMGKT 487 (715)
T ss_pred HHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHH---HHHHhCCc
Confidence 333456899999877743 55554544444555668888999963 244454444443210 11111234
Q ss_pred CceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHH
Q 008629 445 PFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS 488 (559)
Q Consensus 445 pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA 488 (559)
||..+ +.||-.=|-..+|-+--++.+...- .+.+-+-.|.
T Consensus 488 pv~v~---d~pGfv~nRi~~~~~~ea~~lv~~G-a~~e~ID~a~ 527 (715)
T PRK11730 488 PIVVN---DCPGFFVNRVLFPYFAGFSQLLRDG-ADFRQIDKVM 527 (715)
T ss_pred eEEec---CcCchhHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 55552 6788888888888766554444433 5656565554
No 280
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=60.33 E-value=36 Score=35.84 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=25.9
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCC--CcEEEecCCCC
Q 008629 379 KPTILIGSSGVGRTFTKEVIEAMASFNE--KPLILALSNPT 417 (559)
Q Consensus 379 kPtvLIG~S~~~g~Ft~evv~~Ma~~~e--rPIIFaLSNPt 417 (559)
+-|++||+|..|. |+++++.+....+ -|+|.=-+||.
T Consensus 127 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~IaIT~~~~ 165 (296)
T PRK12570 127 ADDVVVGIAASGR--TPYVIGALEYAKQIGATTIALSCNPD 165 (296)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 5699999999886 8999988754333 35544344555
No 281
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=60.05 E-value=27 Score=38.76 Aligned_cols=25 Identities=8% Similarity=0.094 Sum_probs=21.5
Q ss_pred CcccceEEEeCcChHHHHHHHHHHH
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~ 320 (559)
-|...|+.++|-+.-..|+++.|.+
T Consensus 308 ~l~gkrvai~~~~~~~~~la~~L~e 332 (455)
T PRK14476 308 YFGGKRVAIAAEPDLLLALGSFLAE 332 (455)
T ss_pred HhcCCEEEEEeCHHHHHHHHHHHHH
Confidence 4667999999988999999999885
No 282
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=60.04 E-value=18 Score=38.79 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=18.3
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 008629 301 RFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~ 320 (559)
||.|+|||+-|+.+|..+..
T Consensus 1 kI~VIGaG~wGtALA~~la~ 20 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE 20 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 68999999999999999975
No 283
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=60.00 E-value=10 Score=40.19 Aligned_cols=31 Identities=23% Similarity=0.377 Sum_probs=23.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.|+|+|||.||...|..+.+ .|+ ++.++|++
T Consensus 2 DVvIVGaGpAG~~aA~~La~-----~G~-------~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLAR-----AGI-------ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEECC
Confidence 48999999999999988765 354 46666665
No 284
>PLN02688 pyrroline-5-carboxylate reductase
Probab=59.96 E-value=17 Score=36.54 Aligned_cols=94 Identities=18% Similarity=0.289 Sum_probs=53.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEE-cccCccccCCcCCCchhchhhcccc-CCCCCHHHHhccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVI 378 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lv-D~~GLi~~~R~~~l~~~k~~fA~~~-~~~~~L~e~V~~v 378 (559)
||.|+|.|..|..+|+-|++. |.- -..+|+++ |+. .++ .+ .+.... ....+..|+++.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~-----g~~---~~~~i~v~~~r~----~~~---~~----~~~~~g~~~~~~~~e~~~~- 61 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVAS-----GVV---PPSRISTADDSN----PAR---RD----VFQSLGVKTAASNTEVVKS- 61 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHC-----CCC---CcceEEEEeCCC----HHH---HH----HHHHcCCEEeCChHHHHhc-
Confidence 689999999999999998753 420 02367776 542 111 11 121111 112467777764
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCC
Q 008629 379 KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 417 (559)
Q Consensus 379 kPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt 417 (559)
.|++| ++..+ ...+++++.+... .+..+|..+++.+
T Consensus 62 -aDvVi-l~v~~-~~~~~vl~~l~~~~~~~~~iIs~~~g~ 98 (266)
T PLN02688 62 -SDVII-LAVKP-QVVKDVLTELRPLLSKDKLLVSVAAGI 98 (266)
T ss_pred -CCEEE-EEECc-HHHHHHHHHHHhhcCCCCEEEEecCCC
Confidence 66665 33333 4577887776543 3445666565544
No 285
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=59.36 E-value=47 Score=35.77 Aligned_cols=122 Identities=13% Similarity=0.140 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhh
Q 008629 282 VLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 361 (559)
Q Consensus 282 ~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~f 361 (559)
+.|+.++|=.+..+. --++.|+|+|.-+-..+ +++....++ ++|++.|+. . +....+...+
T Consensus 115 aAasavAa~~LA~~d--a~~laiIGaG~qA~~ql----~a~~~v~~~------~~I~i~~r~----~---~~~e~~a~~l 175 (330)
T COG2423 115 AAASAVAAKYLARKD--ASTLAIIGAGAQARTQL----EALKAVRDI------REIRVYSRD----P---EAAEAFAARL 175 (330)
T ss_pred HHHHHHHHHHhccCC--CcEEEEECCcHHHHHHH----HHHHhhCCc------cEEEEEcCC----H---HHHHHHHHHH
Confidence 344556665555542 24788999998654444 444332344 677777764 1 1122222222
Q ss_pred ccc----cCCCCCHHHHhcccCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc
Q 008629 362 AHE----HEPVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 429 (559)
Q Consensus 362 A~~----~~~~~~L~e~V~~vkPtvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~ 429 (559)
.+. .....+++++|+. .|+++.++.. ...|..++|+. .--|.-.=||+-.+-|+.+|-..+
T Consensus 176 ~~~~~~~v~a~~s~~~av~~--aDiIvt~T~s~~Pil~~~~l~~-----G~hI~aiGad~p~k~Eld~e~l~r 241 (330)
T COG2423 176 RKRGGEAVGAADSAEEAVEG--ADIVVTATPSTEPVLKAEWLKP-----GTHINAIGADAPGKRELDPEVLAR 241 (330)
T ss_pred HhhcCccceeccCHHHHhhc--CCEEEEecCCCCCeecHhhcCC-----CcEEEecCCCCcccccCCHHHHHh
Confidence 222 2345799999997 9999998532 34888888871 222333345777899999976543
No 286
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=59.24 E-value=38 Score=37.13 Aligned_cols=95 Identities=17% Similarity=0.188 Sum_probs=53.1
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch----hchhhccc-----cC
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH----FKKPWAHE-----HE 366 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~----~k~~fA~~-----~~ 366 (559)
.+...|++|+|-.....++++.|.+ .|+.. -....| .....+.+ ....+..+ ..
T Consensus 297 ~l~gkrv~v~g~~~~~~~l~~~L~e-----lG~~~-----~~v~~~-------~~~~~~~~~l~~~~~~~~~~~~v~~~~ 359 (429)
T cd03466 297 YNFGRKAAIYGEPDFVVAITRFVLE-----NGMVP-----VLIATG-------SESKKLKEKLEEDLKEYVEKCVILDGA 359 (429)
T ss_pred hcCCCEEEEEcCHHHHHHHHHHHHH-----CCCEE-----EEEEeC-------CCChHHHHHHHHHHHhcCCceEEEeCC
Confidence 4577899999988888999988874 37621 111122 11111111 11111111 11
Q ss_pred CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 367 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 367 ~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
+...+++.++..+||++||-|. .+.+-+.| .-|.| ..+.|.
T Consensus 360 d~~e~~~~l~~~~~dliiG~s~-----~~~~a~~~----~ip~~-~~~~P~ 400 (429)
T cd03466 360 DFFDIESYAKELKIDVLIGNSY-----GRRIAEKL----GIPLI-RIGFPI 400 (429)
T ss_pred CHHHHHHHHHhcCCCEEEECch-----hHHHHHHc----CCCEE-EecCCc
Confidence 2246788888999999999765 23444444 45653 455555
No 287
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=59.15 E-value=24 Score=37.96 Aligned_cols=83 Identities=19% Similarity=0.295 Sum_probs=46.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCc--cccCCcCCCchhchhhccc---cC---CCCCH
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSRKDSLQHFKKPWAHE---HE---PVNNL 371 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL--i~~~R~~~l~~~k~~fA~~---~~---~~~~L 371 (559)
.+|.|+|||+=|+.+|..+.+. |- .=++|..|.+=. |..+|. ..+|... ++ -..+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~n-----g~-----~V~lw~r~~~~~~~i~~~~~------N~~yLp~i~lp~~l~at~Dl 65 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN-----GH-----EVRLWGRDEEIVAEINETRE------NPKYLPGILLPPNLKATTDL 65 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc-----CC-----eeEEEecCHHHHHHHHhcCc------CccccCCccCCcccccccCH
Confidence 5899999999999999999863 41 235777664310 112221 1112211 11 12467
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHH
Q 008629 372 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMA 402 (559)
Q Consensus 372 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma 402 (559)
.++++. --.+|++++++ +-.++++.|.
T Consensus 66 ~~a~~~-ad~iv~avPs~---~~r~v~~~l~ 92 (329)
T COG0240 66 AEALDG-ADIIVIAVPSQ---ALREVLRQLK 92 (329)
T ss_pred HHHHhc-CCEEEEECChH---HHHHHHHHHh
Confidence 777775 12344555553 4666776664
No 288
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=58.75 E-value=37 Score=33.73 Aligned_cols=60 Identities=20% Similarity=0.400 Sum_probs=41.0
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 008629 301 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 379 (559)
Q Consensus 301 riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 379 (559)
||+|.|| |-.|-.+++.|.+ .| .+++.+++. ..| +. ...++.++++..+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~-----~g-------~~v~~~~r~------~~d-~~-----------~~~~~~~~~~~~~ 50 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSP-----EG-------RVVVALTSS------QLD-LT-----------DPEALERLLRAIR 50 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHh-----cC-------CEEEEeCCc------ccC-CC-----------CHHHHHHHHHhCC
Confidence 6889996 8888888887765 25 357777663 111 21 1235778888889
Q ss_pred CcEEEeccCCC
Q 008629 380 PTILIGSSGVG 390 (559)
Q Consensus 380 PtvLIG~S~~~ 390 (559)
||++|=+.+..
T Consensus 51 ~d~vi~~a~~~ 61 (287)
T TIGR01214 51 PDAVVNTAAYT 61 (287)
T ss_pred CCEEEECCccc
Confidence 99999887653
No 289
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=58.59 E-value=12 Score=39.73 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=27.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
.+|+|+|||-+|+.+|-.|.+. | .++.++|++-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-----g-------~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-----G-------YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCCC
Confidence 4899999999999999988763 5 4688999864
No 290
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=58.54 E-value=6.2 Score=41.19 Aligned_cols=36 Identities=11% Similarity=0.282 Sum_probs=26.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 345 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 345 (559)
+|||+|+|.||+-.|+.+.... . ...+|.++|++.-
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~----~-----~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP----L-----PGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC----C-----CCCEEEEECCCCC
Confidence 5899999999999988875421 0 1357999987654
No 291
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=58.50 E-value=35 Score=38.12 Aligned_cols=112 Identities=12% Similarity=0.022 Sum_probs=64.9
Q ss_pred cceEEEeCc-ChHHHHHHHHHHHH-HH-HhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHh
Q 008629 299 EHRFLFLGA-GEAGTGIAELIALE-IS-KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 375 (559)
Q Consensus 299 d~riv~~GA-GsAgiGia~ll~~~-~~-~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V 375 (559)
=.||.|+|| |..|..+|-.|+.. +. ..+|+ -..+.++|.+-=...+-.-+|.+-.-++-++..-..+-.+..
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i-----~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~ 174 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPI-----ALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVF 174 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCc-----ccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHh
Confidence 379999999 99999999987652 00 00133 246888887411111110013322222222111012334556
Q ss_pred cccCCcEEEeccCCCCC--------------CCHHHHHHHHc-CCCCcEEEecCCCC
Q 008629 376 KVIKPTILIGSSGVGRT--------------FTKEVIEAMAS-FNEKPLILALSNPT 417 (559)
Q Consensus 376 ~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~-~~erPIIFaLSNPt 417 (559)
+. .|++|=+.+.+.. .=+++.+.+.+ .+..-||+-.|||-
T Consensus 175 kd--aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPv 229 (444)
T PLN00112 175 QD--AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPC 229 (444)
T ss_pred Cc--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcH
Confidence 65 8888866665421 12467777888 58999999999997
No 292
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=58.48 E-value=13 Score=36.76 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=29.8
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+|++.|+||+|+|..|..-++.|+.+ | .+|.++|.+
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~-----g-------a~VtVvsp~ 41 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKA-----G-------AQLRVIAEE 41 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHC-----C-------CEEEEEcCC
Confidence 47788999999999999999888864 5 368888874
No 293
>PRK06184 hypothetical protein; Provisional
Probab=58.46 E-value=12 Score=41.24 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=26.9
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
++..|+|+|||.+|+..|-+|.. .|+ ++.++|+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~-----~Gi-------~v~viE~~ 35 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELAR-----RGV-------SFRLIEKA 35 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCC
Confidence 45789999999999999988865 376 46677765
No 294
>PRK06847 hypothetical protein; Provisional
Probab=58.33 E-value=13 Score=38.70 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.3
Q ss_pred cceEEEeCcChHHHHHHHHHHH
Q 008629 299 EHRFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~ 320 (559)
..+|+|+|||.||+..|..|..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~ 25 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR 25 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 4589999999999999988865
No 295
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=57.75 E-value=30 Score=36.12 Aligned_cols=123 Identities=20% Similarity=0.268 Sum_probs=70.0
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc-CccccCCcCCCchhchhhcccc-CCCCCHHHHhcccC
Q 008629 302 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVIK 379 (559)
Q Consensus 302 iv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~-GLi~~~R~~~l~~~k~~fA~~~-~~~~~L~e~V~~vk 379 (559)
|.|+|||..|..+|-.++. .|+. ..+.++|.+ .++..-. .+|.+....+.... ....+ .+.++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~-----~~~~-----~el~l~D~~~~~~~g~~-~DL~~~~~~~~~~~i~~~~~-~~~l~~-- 66 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA-----KGLA-----SELVLVDVNEEKAKGDA-LDLSHASAFLATGTIVRGGD-YADAAD-- 66 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCccHHHHHH-HhHHHhccccCCCeEEECCC-HHHhCC--
Confidence 5789999999998866654 3662 579999973 2211111 12443332221100 00133 345665
Q ss_pred CcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--CCcEEEeeCC
Q 008629 380 PTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGS 441 (559)
Q Consensus 380 PtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt--~G~aifAsGS 441 (559)
.|++|=+.+.+ |- .=+++.+.+.++++.-+|+-.|||. ++...-+++++ +-+-+|++|.
T Consensus 67 aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~---d~~~~~~~~~sg~~~~kviG~gt 141 (300)
T cd00300 67 ADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPV---DILTYVAQKLSGLPKNRVIGSGT 141 (300)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChH---HHHHHHHHHHhCcCHHHEEecCC
Confidence 88887555543 21 1245777888899999999999998 23344444432 1233565543
No 296
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=57.54 E-value=10 Score=41.26 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=25.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
||||+|+|.||+..|+.|.+. +- .-+|.|+|+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~-----~~-----~~~I~li~~~ 35 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL-----DK-----ESDIIIFEKD 35 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh-----CC-----CCCEEEEECC
Confidence 899999999999999999652 11 1357788775
No 297
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=57.54 E-value=9.7 Score=39.49 Aligned_cols=32 Identities=34% Similarity=0.614 Sum_probs=27.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
..+-|+|||-.|-|||+....+ |+ ++||+|+.
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~s-----g~-------~V~l~d~~ 43 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATS-----GL-------NVWLVDAN 43 (298)
T ss_pred cceEEEcccccchhHHHHHHhc-----CC-------ceEEecCC
Confidence 4678999999999999988764 76 69999975
No 298
>PRK13938 phosphoheptose isomerase; Provisional
Probab=57.54 E-value=37 Score=33.61 Aligned_cols=104 Identities=14% Similarity=0.157 Sum_probs=51.3
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhh-hcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhc
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE-TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 376 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~ee-A~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~ 376 (559)
++.||.|+|.|..| -+|..+..-|.. +++.+- +-..+-+......++.- . +=..+-..|++. +.-.++
T Consensus 44 ~g~rI~i~G~G~S~-~~A~~fa~~L~~--~~~~~r~~lg~~~l~~~~~~~~a~-~-nd~~~~~~~~~~------~~~~~~ 112 (196)
T PRK13938 44 AGARVFMCGNGGSA-ADAQHFAAELTG--HLIFDRPPLGAEALHANSSHLTAV-A-NDYDYDTVFARA------LEGSAR 112 (196)
T ss_pred CCCEEEEEeCcHHH-HHHHHHHHHcCC--CccCCcCccceEEEeCChHHHHHh-h-ccccHHHHHHHH------HHhcCC
Confidence 57899999999987 466666655431 111100 00112222111111100 0 001122223321 222233
Q ss_pred ccCCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEecCCC
Q 008629 377 VIKPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNP 416 (559)
Q Consensus 377 ~vkPtvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNP 416 (559)
+-|++|+.|..|. |+++++.+. +...-|+|.=-+||
T Consensus 113 --~~DllI~iS~SG~--t~~vi~a~~~Ak~~G~~vI~iT~~~ 150 (196)
T PRK13938 113 --PGDTLFAISTSGN--SMSVLRAAKTARELGVTVVAMTGES 150 (196)
T ss_pred --CCCEEEEEcCCCC--CHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 5799999999875 999999874 33444555433333
No 299
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=57.24 E-value=73 Score=34.06 Aligned_cols=165 Identities=16% Similarity=0.177 Sum_probs=91.4
Q ss_pred HhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhh-ccccCCCCC
Q 008629 292 LIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNN 370 (559)
Q Consensus 292 ~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~f-A~~~~~~~~ 370 (559)
..|..+...++-|+|.|..|..+|+.+. ++ |+ +|...|++.. ++..+.+ ++ .-+
T Consensus 139 ~~~~~l~gktvGIiG~GrIG~avA~r~~-~F----gm-------~v~y~~~~~~---------~~~~~~~~~~----y~~ 193 (324)
T COG1052 139 LLGFDLRGKTLGIIGLGRIGQAVARRLK-GF----GM-------KVLYYDRSPN---------PEAEKELGAR----YVD 193 (324)
T ss_pred ccccCCCCCEEEEECCCHHHHHHHHHHh-cC----CC-------EEEEECCCCC---------hHHHhhcCce----ecc
Confidence 4456788999999999999999999997 43 65 4555665432 1111111 21 123
Q ss_pred HHHHhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCC---C
Q 008629 371 LLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP---F 443 (559)
Q Consensus 371 L~e~V~~vkPtvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSP---F 443 (559)
|.|.++. .|+++-..- .-++|+++.++.|. +.-+|.=.|.=.--=|----+|++ +|+ |.+-|.- +
T Consensus 194 l~ell~~--sDii~l~~Plt~~T~hLin~~~l~~mk---~ga~lVNtaRG~~VDe~ALi~AL~--~g~-i~gaglDV~e~ 265 (324)
T COG1052 194 LDELLAE--SDIISLHCPLTPETRHLINAEELAKMK---PGAILVNTARGGLVDEQALIDALK--SGK-IAGAGLDVFEN 265 (324)
T ss_pred HHHHHHh--CCEEEEeCCCChHHhhhcCHHHHHhCC---CCeEEEECCCccccCHHHHHHHHH--hCC-cceEEeeecCC
Confidence 8888885 898885432 12689999999996 455655444322112222223333 343 3333320 0
Q ss_pred CCceeCCeee-CccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhcc
Q 008629 444 DPFEYNGKVF-VPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQV 495 (559)
Q Consensus 444 ~pv~~~G~~~-~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v 495 (559)
.|...+-.-. .++. .|+.+-|=+|.+..-++ ..|...+.+.|-+.+
T Consensus 266 Ep~~~d~~l~~l~~~-~~vvltPHia~at~ea~-----~~m~~~~~~nl~~~~ 312 (324)
T COG1052 266 EPALFDHPLLRLDNF-PNVVLTPHIASATEEAR-----KAMAELALENLEAFF 312 (324)
T ss_pred CCCCCChhHhhccCC-CCEEEccccccccHHHH-----HHHHHHHHHHHHHHH
Confidence 1111111111 1233 45777777776664443 355555666665555
No 300
>PRK07236 hypothetical protein; Provisional
Probab=57.19 E-value=15 Score=38.83 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.1
Q ss_pred cccceEEEeCcChHHHHHHHHHHH
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~ 320 (559)
....+|+|+|||.||+..|..|..
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~ 27 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRR 27 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh
Confidence 456799999999999999998876
No 301
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=57.06 E-value=37 Score=32.86 Aligned_cols=35 Identities=31% Similarity=0.321 Sum_probs=23.6
Q ss_pred cccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 297 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 297 l~d~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+++.+++|.|+ |..|..+|+.+++ .|. +++++|+.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~-----~g~-------~v~~~~r~ 37 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAK-----EGA-------KVVIADLN 37 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 45678999996 6666666666653 353 57777764
No 302
>PRK08163 salicylate hydroxylase; Provisional
Probab=56.43 E-value=14 Score=38.88 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.1
Q ss_pred cceEEEeCcChHHHHHHHHHHH
Q 008629 299 EHRFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~ 320 (559)
..+|+|+|||.||+..|-.|..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~ 25 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR 25 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh
Confidence 4689999999999999988765
No 303
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=56.42 E-value=45 Score=34.85 Aligned_cols=105 Identities=16% Similarity=0.219 Sum_probs=62.8
Q ss_pred hCCCcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchh----------chhh
Q 008629 293 IGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF----------KKPW 361 (559)
Q Consensus 293 ~g~~l~d~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~----------k~~f 361 (559)
++..++..||+|.|| |-.|.-+++.|+.. | .+++.+|+. .......+... +..|
T Consensus 9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~~-----g-------~~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (348)
T PRK15181 9 TKLVLAPKRWLITGVAGFIGSGLLEELLFL-----N-------QTVIGLDNF---STGYQHNLDDVRTSVSEEQWSRFIF 73 (348)
T ss_pred hcccccCCEEEEECCccHHHHHHHHHHHHC-----C-------CEEEEEeCC---CCcchhhhhhhhhccccccCCceEE
Confidence 445677789999997 99998888888752 4 257777753 11110111110 0111
Q ss_pred cc-ccCCCCCHHHHhcccCCcEEEeccCCCCC----------------CCHHHHHHHHcCCCCcEEEecC
Q 008629 362 AH-EHEPVNNLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILALS 414 (559)
Q Consensus 362 A~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIFaLS 414 (559)
-. +-.+...|.++++ +||++|=+.+.... .|..+++.+.+..-+.+||+=|
T Consensus 74 ~~~Di~d~~~l~~~~~--~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS 141 (348)
T PRK15181 74 IQGDIRKFTDCQKACK--NVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAAS 141 (348)
T ss_pred EEccCCCHHHHHHHhh--CCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Confidence 11 2122235677777 49999988876432 2457888887765568998754
No 304
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=55.55 E-value=11 Score=35.13 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=28.0
Q ss_pred EEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCc
Q 008629 303 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 345 (559)
Q Consensus 303 v~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 345 (559)
+|+|+|.+|+.+++.|+... .....-+|.++|.++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-------~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-------DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-------CCCCCCEEEEEcCCCc
Confidence 48999999999999998864 1113467999999655
No 305
>PRK00536 speE spermidine synthase; Provisional
Probab=54.89 E-value=20 Score=37.31 Aligned_cols=102 Identities=16% Similarity=0.161 Sum_probs=59.0
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCC-CCHHHHhcc
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNLLDAVKV 377 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~-~~L~e~V~~ 377 (559)
-.||+|+|.|-.| +++-++.. - +++.|||-++-|++--++.++..+.-|-.+.-.. ..+.+.- .
T Consensus 73 pk~VLIiGGGDGg--~~REvLkh-----~-------~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~-~ 137 (262)
T PRK00536 73 LKEVLIVDGFDLE--LAHQLFKY-----D-------THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD-I 137 (262)
T ss_pred CCeEEEEcCCchH--HHHHHHCc-----C-------CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhcc-C
Confidence 3899999999985 66666553 1 3899999999776543333655554443221111 1122211 1
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCC
Q 008629 378 IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPF 443 (559)
Q Consensus 378 vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF 443 (559)
-+=||+|-=|. |+++-.+.+. .+++ -+|-.+.-+||||
T Consensus 138 ~~fDVIIvDs~----~~~~fy~~~~-----------------------~~L~-~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 138 KKYDLIICLQE----PDIHKIDGLK-----------------------RMLK-EDGVFISVAKHPL 175 (262)
T ss_pred CcCCEEEEcCC----CChHHHHHHH-----------------------HhcC-CCcEEEECCCCcc
Confidence 25788886553 6666555443 2332 3566666678887
No 306
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=54.88 E-value=39 Score=35.82 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.7
Q ss_pred cccceEEEeCcChHHHHHHHHHHH
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~ 320 (559)
|++.||.|+|+|.-|-++|..|.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~ 24 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRD 24 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHH
Confidence 578899999999999999999876
No 307
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=54.81 E-value=17 Score=39.04 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=28.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCcc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 346 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi 346 (559)
.||||+|+|.||+..|..|.+. |- .-+|.++|++.-+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~-----~~-----~~~Vtli~~~~~~ 37 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRL-----NK-----ELEITVYEKTDIV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHH-----CC-----CCcEEEEECCCcc
Confidence 3899999999999999988653 21 1378999887543
No 308
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=54.74 E-value=45 Score=34.26 Aligned_cols=98 Identities=12% Similarity=0.131 Sum_probs=50.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcC-CChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTK-APVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 378 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G-~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v 378 (559)
+||.|+|+|.-|..++..+... | ++ ..+++++|++. . +.+......+. ......+..++++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~-----g~~~----~~~V~~~~r~~---~---~~~~~l~~~~~-~~~~~~~~~e~~~~- 64 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLET-----EVAT----PEEIILYSSSK---N---EHFNQLYDKYP-TVELADNEAEIFTK- 64 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CCCC----cccEEEEeCCc---H---HHHHHHHHHcC-CeEEeCCHHHHHhh-
Confidence 4799999999999999988653 4 21 24677777631 0 11111111110 00012355566653
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCC
Q 008629 379 KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 417 (559)
Q Consensus 379 kPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt 417 (559)
+|++| ++..+ ...+++++.+..+ .+..+|..++|-.
T Consensus 65 -aDvVi-lavpp-~~~~~vl~~l~~~l~~~~~ivS~~aGi 101 (277)
T PRK06928 65 -CDHSF-ICVPP-LAVLPLLKDCAPVLTPDRHVVSIAAGV 101 (277)
T ss_pred -CCEEE-EecCH-HHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 66666 44433 3355666655432 2233455555544
No 309
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=54.25 E-value=24 Score=39.88 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=27.8
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+-...+|+|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~-----~G~-------~V~v~e~~ 169 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRR-----MGH-------AVTIFEAG 169 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 3457899999999999999987754 363 47788853
No 310
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=54.23 E-value=45 Score=36.17 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=25.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
||.|+|+|..|..+|..+... |. +++.+|++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-----G~-------~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-----GH-------EVTGVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-----CC-------eEEEEECC
Confidence 799999999999999988753 53 57788864
No 311
>PRK06475 salicylate hydroxylase; Provisional
Probab=54.07 E-value=14 Score=39.28 Aligned_cols=21 Identities=38% Similarity=0.322 Sum_probs=18.6
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 008629 300 HRFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~ 320 (559)
+||+|+|||.||+..|-.|.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~ 23 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA 23 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh
Confidence 899999999999999977754
No 312
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=53.98 E-value=16 Score=39.19 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=26.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCcc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 346 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi 346 (559)
-.|+|+|||.||...|..+.+. |+ ++.++|++..+
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~-----G~-------~VlvlEk~~~~ 38 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKA-----GL-------DVLVLEKGSEP 38 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHc-----CC-------eEEEEecCCCC
Confidence 4689999999999999998774 64 46666665444
No 313
>PRK09126 hypothetical protein; Provisional
Probab=53.86 E-value=15 Score=38.45 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.1
Q ss_pred cceEEEeCcChHHHHHHHHHHH
Q 008629 299 EHRFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~ 320 (559)
+..|+|+|||.||+..|-.|.+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~ 24 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAG 24 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHh
Confidence 4579999999999999988865
No 314
>PRK07233 hypothetical protein; Provisional
Probab=53.79 E-value=14 Score=38.98 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=25.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
||+|+|||-||+..|..|.+ .| .++.+++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~-----~G-------~~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAK-----RG-------HEVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CC-------CcEEEEEeC
Confidence 68999999999999988865 36 368888776
No 315
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=53.78 E-value=15 Score=39.60 Aligned_cols=40 Identities=25% Similarity=0.412 Sum_probs=33.8
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCc
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 345 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 345 (559)
.+|++|=||++|||..|--++++|+.. |+ ++|.+||-+-.
T Consensus 70 ~kl~~syVVVVG~GgVGSwv~nmL~RS-----G~------qKi~iVDfdqV 109 (430)
T KOG2018|consen 70 EKLTNSYVVVVGAGGVGSWVANMLLRS-----GV------QKIRIVDFDQV 109 (430)
T ss_pred HHhcCcEEEEEecCchhHHHHHHHHHh-----cC------ceEEEechhhc
Confidence 468899999999999999999999874 76 78999987643
No 316
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=53.78 E-value=17 Score=40.37 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.2
Q ss_pred CcccceEEEeCcChHHHHHHHHHHH
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~ 320 (559)
+....+|+|+|||.||+..|..+.+
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~ 31 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRR 31 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHh
Confidence 3456799999999999999988865
No 317
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.69 E-value=19 Score=39.57 Aligned_cols=28 Identities=18% Similarity=0.206 Sum_probs=23.6
Q ss_pred hCCCcccceEEEeCcChHHHHHHHHHHH
Q 008629 293 IGGTLAEHRFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 293 ~g~~l~d~riv~~GAGsAgiGia~ll~~ 320 (559)
.|..++.++++|+|+|.+|+.+|+.|.+
T Consensus 10 ~~~~~~~~~v~viG~G~~G~~~A~~L~~ 37 (480)
T PRK01438 10 WHSDWQGLRVVVAGLGVSGFAAADALLE 37 (480)
T ss_pred cccCcCCCEEEEECCCHHHHHHHHHHHH
Confidence 4556778899999999999999988865
No 318
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=53.54 E-value=59 Score=35.69 Aligned_cols=87 Identities=14% Similarity=0.102 Sum_probs=46.4
Q ss_pred HHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhch-----h
Q 008629 286 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK-----P 360 (559)
Q Consensus 286 ll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~-----~ 360 (559)
+..++.-....|+..|++++|.++-.-.++.++ ++.|+.. ..+ |.-.... +.....++ .
T Consensus 287 ~~~~l~~~~~~L~Gkrv~i~~g~~~~~~~~~~l-----~elGmev-------v~~---g~~~~~~-~~~~~~~~~~~~~~ 350 (421)
T cd01976 287 MEAVIAKYRPRLEGKTVMLYVGGLRPRHYIGAY-----EDLGMEV-------VGT---GYEFAHR-DDYERTEVIPKEGT 350 (421)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHH-----HHCCCEE-------EEE---EeecCCH-HHHhhHHhhcCCce
Confidence 445555566788899999998766555665533 3358732 111 0000000 00111110 0
Q ss_pred hccccCCCCCHHHHhcccCCcEEEeccC
Q 008629 361 WAHEHEPVNNLLDAVKVIKPTILIGSSG 388 (559)
Q Consensus 361 fA~~~~~~~~L~e~V~~vkPtvLIG~S~ 388 (559)
..-+..+...+++.++..+||++||-|.
T Consensus 351 ~i~~~~d~~e~~~~i~~~~pDliig~~~ 378 (421)
T cd01976 351 LLYDDVTHYELEEFVKRLKPDLIGSGIK 378 (421)
T ss_pred EEEcCCCHHHHHHHHHHhCCCEEEecCc
Confidence 1011122246888999999999999765
No 319
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.47 E-value=35 Score=37.17 Aligned_cols=115 Identities=21% Similarity=0.216 Sum_probs=64.1
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchh--chhhccccCCCCCHHHHh
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF--KKPWAHEHEPVNNLLDAV 375 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~--k~~fA~~~~~~~~L~e~V 375 (559)
+|-.|+|+|.|-.|+++|++|.+ .|. ++...|.+-- ....+.|... ..++.. ...+ .+.+
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~-----~G~-------~v~~~D~~~~--~~~~~~l~~~~~g~~~~~---~~~~-~~~~ 66 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLAR-----QGI-------PFAVMDSREQ--PPGLDTLAREFPDVELRC---GGFD-CELL 66 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHh-----CCC-------eEEEEeCCCC--chhHHHHHhhcCCcEEEe---CCCC-hHHh
Confidence 57789999999999998888765 364 5778886420 0000112110 111110 0011 2234
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCceeCCeee
Q 008629 376 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVF 453 (559)
Q Consensus 376 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~pv~~~G~~~ 453 (559)
+ ++|.+|=.++.+ .-++++.++.. ...||+ +.+|.-+ ...+.+.|-.||| ||||-
T Consensus 67 ~--~~d~vV~sp~i~-~~~p~~~~a~~--~~i~i~-------~~~el~~----~~~~~~~I~VTGT-------~GKTT 121 (448)
T PRK03803 67 V--QASEIIISPGLA-LDTPALRAAAA--MGIEVI-------GDIELFA----REAKAPVIAITGS-------NGKST 121 (448)
T ss_pred c--CCCEEEECCCCC-CCCHHHHHHHH--CCCcEE-------EHHHHHH----HhcCCCEEEEECC-------CcHHH
Confidence 3 478887656665 34677776654 356776 2333322 2235678888997 77653
No 320
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=53.19 E-value=16 Score=37.32 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=27.0
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
+..|+|+|||.||+..|-.+.. .|+ ++.++|++-
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~-----~G~-------~V~liEk~~ 58 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAK-----AGL-------KVAVFERKL 58 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 5689999999999999887754 364 588888764
No 321
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=53.13 E-value=21 Score=37.94 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=41.9
Q ss_pred CcchhHHHHHHHHHHHHHhCCCcccceEEEeCc-ChHHHHHHHHHHH
Q 008629 275 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIAL 320 (559)
Q Consensus 275 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GA-GsAgiGia~ll~~ 320 (559)
--+||-++.-+++-+...+|..|++..+-|+|| |..|.+||+.|..
T Consensus 143 ns~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~ 189 (351)
T COG5322 143 NSHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAP 189 (351)
T ss_pred CccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhcc
Confidence 347899999999999999999999999999998 8999999999865
No 322
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=52.94 E-value=13 Score=38.99 Aligned_cols=73 Identities=14% Similarity=0.211 Sum_probs=48.5
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCC----CC
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV----NN 370 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~----~~ 370 (559)
++|+.-+|+++|+|.-|.-+|+-|+.+ |+ ++|.++|.+-+ ..+ +|. ..|-.+..-. ..
T Consensus 22 ~KL~~SrVLVVG~GGLGsEVAKnLaLA-----GV------GsItIvDdD~V-e~S---NL~---RQfl~~~dvGk~KAea 83 (287)
T PTZ00245 22 QQLMHTSVALHGVAGAAAEAAKNLVLA-----GV------RAVAVADEGLV-TDA---DVC---TNYLMQGEAGGTRGAR 83 (287)
T ss_pred HHHhhCeEEEECCCchHHHHHHHHHHc-----CC------CeEEEecCCcc-chh---hhc---cccccccccCCcHHHH
Confidence 568899999999999999999988775 87 78999998732 211 132 2222221111 24
Q ss_pred HHHHhcccCCcEEEe
Q 008629 371 LLDAVKVIKPTILIG 385 (559)
Q Consensus 371 L~e~V~~vkPtvLIG 385 (559)
..+-++.++|+|-|=
T Consensus 84 Aa~~L~eLNP~V~V~ 98 (287)
T PTZ00245 84 ALGALQRLNPHVSVY 98 (287)
T ss_pred HHHHHHHHCCCcEEE
Confidence 556677777887773
No 323
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=52.91 E-value=19 Score=39.43 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=28.9
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+.+..+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~-----~G-------~~V~vie~~ 165 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAK-----AG-------HSVTVFEAL 165 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEecC
Confidence 4456899999999999999988865 35 368888874
No 324
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=52.86 E-value=14 Score=38.99 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.5
Q ss_pred cceEEEeCcChHHHHHHHHHHH
Q 008629 299 EHRFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~ 320 (559)
+.+|+|+|||.||+..|-.|.+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~ 39 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKD 39 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhc
Confidence 4689999999999999988865
No 325
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=52.80 E-value=21 Score=39.81 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=29.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
||+++|||..|+-+++.|+.+ |+.-.+ .++|.++|.+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~-----Gv~~g~-~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM-----GVGTGE-SGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CCCcCC-CCeEEEECCC
Confidence 689999999999999999875 652211 2689999987
No 326
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=52.70 E-value=17 Score=37.56 Aligned_cols=22 Identities=45% Similarity=0.679 Sum_probs=19.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHH
Q 008629 300 HRFLFLGAGEAGTGIAELIALE 321 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~ 321 (559)
.||.|+|||..|.|||..++.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~ 27 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA 27 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC
Confidence 4899999999999999988763
No 327
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=52.66 E-value=20 Score=36.04 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=27.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 345 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 345 (559)
.|+|+|||-+|+.+|-.|.+ .| .++.++|+..+
T Consensus 1 DvvIIGaGi~G~~~A~~La~-----~G-------~~V~l~e~~~~ 33 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-----RG-------HSVTLLERGDI 33 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-----TT-------SEEEEEESSST
T ss_pred CEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEeeccc
Confidence 48999999999999998876 36 47999999833
No 328
>PLN02268 probable polyamine oxidase
Probab=52.59 E-value=7 Score=41.91 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=18.6
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 008629 301 RFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~ 320 (559)
+|+|+|||-||+..|..|.+
T Consensus 2 ~VvVIGaGisGL~aA~~L~~ 21 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHD 21 (435)
T ss_pred CEEEECCCHHHHHHHHHHHh
Confidence 78999999999999999976
No 329
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=52.53 E-value=13 Score=39.22 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=26.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
.+|||+|+|.||+..|+.|... + ..-+|.++++..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~-----~-----~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ-----D-----AHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh-----C-----cCCCEEEEeCCC
Confidence 4899999999999999988652 1 124688887654
No 330
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=52.38 E-value=16 Score=38.40 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=24.7
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 302 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 302 iv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
|+|+|||.||+.+|..+.. .|+ ++.++|++.
T Consensus 2 viIiGaG~AGl~~A~~la~-----~g~-------~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELAR-----PGL-------RVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHh-----CCC-------eEEEEccCC
Confidence 7999999999999977653 364 688899764
No 331
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=52.07 E-value=1.7e+02 Score=34.39 Aligned_cols=155 Identities=15% Similarity=0.102 Sum_probs=86.0
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCC--------CCCCHHHHhcccCCcEEEeeCCCC
Q 008629 372 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ--------SECTAEEAYTWSKGRAIFASGSPF 443 (559)
Q Consensus 372 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~--------~EctpedA~~wt~G~aifAsGSPF 443 (559)
.+.-+.++|+++|..++.+ +.-.-+.+-.++-+|=|.+=.-||... .+-|.++++++... |+..-=.
T Consensus 404 ~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~---~~~~~gk 478 (699)
T TIGR02440 404 KDIEQECAAHTIFASNTSS--LPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVA---LAKKQGK 478 (699)
T ss_pred HHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHH---HHHHcCC
Confidence 3444556899999877743 454444443356677788888898742 34455665554321 1111124
Q ss_pred CCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccCccccCCCcccCCCCCccchHHHHHHHH
Q 008629 444 DPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANV 523 (559)
Q Consensus 444 ~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~aV 523 (559)
.||..+ +.||-.=|-.++|-+-=++.+..-- ++.+-+-.|.+.+ |.-..|+.-+..+-..+...|
T Consensus 479 ~pv~v~---d~pGfi~nRl~~~~~~Ea~~l~~~G-~~~~dID~a~~~~-----------G~p~GPf~l~D~vGld~~~~i 543 (699)
T TIGR02440 479 TPIVVA---DKAGFYVNRILAPYMNEAARLLLEG-EPVEHIDKALVKF-----------GFPVGPITLLDEVGIDVGAKI 543 (699)
T ss_pred eEEEEc---cccchHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHc-----------CCCcCHHHHHHHhchHHHHHH
Confidence 455553 4688888888888777666555433 4666666665421 111234454445555566666
Q ss_pred HHHHHHh-CCCCCCCCchhHHHHHHh
Q 008629 524 AAKAYEL-GVATRLPRPQNLVKCAES 548 (559)
Q Consensus 524 a~~A~~~-GvA~~~~~~~d~~~~i~~ 548 (559)
.+..+++ |- ....|+-+.+++++
T Consensus 544 ~~~l~~~~~~--~~~~~~~l~~~v~~ 567 (699)
T TIGR02440 544 SPILEAELGE--RFKAPAVFDKLLSD 567 (699)
T ss_pred HHHHHHhcCC--CCCCcHHHHHHHHC
Confidence 6554433 22 12223445566655
No 332
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=52.01 E-value=7.4 Score=41.38 Aligned_cols=91 Identities=20% Similarity=0.276 Sum_probs=51.0
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc----hhchhhcc-ccCCCCCHHHHhc
Q 008629 302 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ----HFKKPWAH-EHEPVNNLLDAVK 376 (559)
Q Consensus 302 iv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~----~~k~~fA~-~~~~~~~L~e~V~ 376 (559)
|+|+|+|..|-.+++.|.+. ... .++.+.|++ .++.+.+. ..+..+.. +..+..+|.+.++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~----~~~------~~v~va~r~----~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 66 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR----GPF------EEVTVADRN----PEKAERLAEKLLGDRVEAVQVDVNDPESLAELLR 66 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT----TCE-------EEEEEESS----HHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT
T ss_pred CEEEcCcHHHHHHHHHHhcC----CCC------CcEEEEECC----HHHHHHHHhhccccceeEEEEecCCHHHHHHHHh
Confidence 79999999999999888753 111 278888875 11100010 01111111 1222235888888
Q ss_pred ccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 008629 377 VIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 411 (559)
Q Consensus 377 ~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 411 (559)
. .|++|-+++.. ++..++++-.+. ..+.|=
T Consensus 67 ~--~dvVin~~gp~--~~~~v~~~~i~~-g~~yvD 96 (386)
T PF03435_consen 67 G--CDVVINCAGPF--FGEPVARACIEA-GVHYVD 96 (386)
T ss_dssp T--SSEEEE-SSGG--GHHHHHHHHHHH-T-EEEE
T ss_pred c--CCEEEECCccc--hhHHHHHHHHHh-CCCeec
Confidence 7 69999988754 788888875432 334444
No 333
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.91 E-value=51 Score=36.69 Aligned_cols=89 Identities=16% Similarity=0.211 Sum_probs=49.8
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhc
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 376 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~ 376 (559)
+.++|++|+|.|..|+..++.|.. .|. ++.+.|.+ ..+ +...++.-++- .......+.++
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~-----~G~-------~v~~~D~~----~~~---~~~l~~~g~~~-~~~~~~~~~l~ 69 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTR-----FGA-------RPTVCDDD----PDA---LRPHAERGVAT-VSTSDAVQQIA 69 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHH-----CCC-------EEEEEcCC----HHH---HHHHHhCCCEE-EcCcchHhHhh
Confidence 356899999999999999986654 363 57778854 111 11111100000 01112334454
Q ss_pred ccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEE
Q 008629 377 VIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLI 410 (559)
Q Consensus 377 ~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPII 410 (559)
. .|++|=.++.+ .-++++.++.. ..-||+
T Consensus 70 ~--~D~VV~SpGi~-~~~p~~~~a~~--~gi~v~ 98 (488)
T PRK03369 70 D--YALVVTSPGFR-PTAPVLAAAAA--AGVPIW 98 (488)
T ss_pred c--CCEEEECCCCC-CCCHHHHHHHH--CCCcEe
Confidence 3 78888666766 34566655544 356776
No 334
>PRK07589 ornithine cyclodeaminase; Validated
Probab=51.86 E-value=1.2e+02 Score=32.75 Aligned_cols=105 Identities=14% Similarity=0.141 Sum_probs=65.7
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc---CCCCCHHHH
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 374 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~---~~~~~L~e~ 374 (559)
.-.++.|+|+|.-+..-++.++.. ..+ ++|+++|+. ..+ .+.+...+.+.. ....+++|+
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~v----r~i------~~V~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~a 190 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKAL----LGI------EEIRLYDID----PAA---TAKLARNLAGPGLRIVACRSVAEA 190 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHh----CCc------eEEEEEeCC----HHH---HHHHHHHHHhcCCcEEEeCCHHHH
Confidence 347899999999887777666653 233 678888663 221 223332332211 113689999
Q ss_pred hcccCCcEEEeccCC-C--CCCCHHHHHHHHcCCCCcEEEec-CCCCCCCCCCHHHH
Q 008629 375 VKVIKPTILIGSSGV-G--RTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEEA 427 (559)
Q Consensus 375 V~~vkPtvLIG~S~~-~--g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~~EctpedA 427 (559)
++. .||++.++.. . .+|..++++. .--|-++ |+--.+.|+.++-.
T Consensus 191 v~~--ADIIvtaT~S~~~~Pvl~~~~lkp------G~hV~aIGs~~p~~~Eld~~~l 239 (346)
T PRK07589 191 VEG--ADIITTVTADKTNATILTDDMVEP------GMHINAVGGDCPGKTELHPDIL 239 (346)
T ss_pred Hhc--CCEEEEecCCCCCCceecHHHcCC------CcEEEecCCCCCCcccCCHHHH
Confidence 986 9999987643 2 4688888852 2235555 45445789998753
No 335
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=51.79 E-value=43 Score=35.77 Aligned_cols=37 Identities=27% Similarity=0.232 Sum_probs=26.0
Q ss_pred CHHHHhcccCCcE-EEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 008629 370 NLLDAVKVIKPTI-LIGSSGVGRTFTKEVIEAMASFNEKPLIL 411 (559)
Q Consensus 370 ~L~e~V~~vkPtv-LIG~S~~~g~Ft~evv~~Ma~~~erPIIF 411 (559)
.|.+.... .|+ ++|-|-..+ |...++++|+ +..|||+
T Consensus 312 el~~~y~~--aDi~~v~~S~~e~-~g~~~lEAma--~G~PVI~ 349 (425)
T PRK05749 312 ELGLLYAI--ADIAFVGGSLVKR-GGHNPLEPAA--FGVPVIS 349 (425)
T ss_pred HHHHHHHh--CCEEEECCCcCCC-CCCCHHHHHH--hCCCEEE
Confidence 45566654 787 777665333 5556899999 6889997
No 336
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=51.77 E-value=44 Score=34.75 Aligned_cols=102 Identities=12% Similarity=0.060 Sum_probs=54.2
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch----hchhhccccCCCCCHHH
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH----FKKPWAHEHEPVNNLLD 373 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~----~k~~fA~~~~~~~~L~e 373 (559)
...||.|+|+|+-|..+|-.|.++ | .++.++++... ..-+...+.- ....+ ....-..+..
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~-----g-------~~V~~~~r~~~-~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~- 68 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARA-----G-------FDVHFLLRSDY-EAVRENGLQVDSVHGDFHL-PPVQAYRSAE- 68 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEEeCCH-HHHHhCCeEEEeCCCCeee-cCceEEcchh-
Confidence 456899999999999999888663 4 34555555321 1111111110 00000 0000011222
Q ss_pred HhcccCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 008629 374 AVKVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 418 (559)
Q Consensus 374 ~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 418 (559)
... .+|++| ++... .-++++++.+... .+..+|..|-|=-.
T Consensus 69 ~~~--~~D~vi-lavK~-~~~~~~~~~l~~~~~~~~~iv~lqNG~~ 110 (313)
T PRK06249 69 DMP--PCDWVL-VGLKT-TANALLAPLIPQVAAPDAKVLLLQNGLG 110 (313)
T ss_pred hcC--CCCEEE-EEecC-CChHhHHHHHhhhcCCCCEEEEecCCCC
Confidence 233 367776 44432 3478888888653 35667888988664
No 337
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=51.71 E-value=71 Score=34.49 Aligned_cols=33 Identities=15% Similarity=0.395 Sum_probs=26.7
Q ss_pred cceEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 299 EHRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 299 d~riv~~G-AGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
..+|.|+| +|..|-.+|..+..+ |. .++++|++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~-----G~-------~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLS-----GY-------QVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHC-----CC-------eEEEeCCC
Confidence 37899998 999999999998763 53 47888874
No 338
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=51.47 E-value=17 Score=40.27 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=33.0
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+.|++-+|+++|+|..|.-+++.|+.. |+ ++|.++|.+
T Consensus 16 ~~L~~s~VlliG~gglGsEilKNLvL~-----GI------g~~tIvD~~ 53 (425)
T cd01493 16 AALESAHVCLLNATATGTEILKNLVLP-----GI------GSFTIVDGS 53 (425)
T ss_pred HHHhhCeEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 357889999999999999999988764 87 789999987
No 339
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=51.42 E-value=18 Score=39.85 Aligned_cols=36 Identities=17% Similarity=0.394 Sum_probs=28.7
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
+.-+++|+|||-+|+++|.-|.++ |++ ++.++|+..
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~-----g~~------~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQA-----GVP------DFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHc-----CCC------cEEEEEccC
Confidence 345899999999999999988774 763 377888764
No 340
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=51.39 E-value=20 Score=37.58 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=26.1
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.-+|+|+|||.||...|-.|...- + .|+ ++.++|++
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~-~-~G~-------~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLS-H-GGL-------PVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcc-c-CCC-------EEEEEeCC
Confidence 457999999999999988886520 0 164 57777773
No 341
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=51.03 E-value=19 Score=41.56 Aligned_cols=34 Identities=26% Similarity=0.505 Sum_probs=27.8
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+..||+|+|+|.||+..|..|.. .|. ++.++|+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~-----~G~-------~V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLAR-----NGV-------AVTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 56899999999999999988875 363 47788874
No 342
>PRK12828 short chain dehydrogenase; Provisional
Probab=50.95 E-value=31 Score=32.81 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=23.3
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 296 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 296 ~l~d~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
++++.+++|.|| |..|..+++.+++ .|. +++++|++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~-----~G~-------~v~~~~r~ 40 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAA-----RGA-------RVALIGRG 40 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 466789999997 4455555555543 363 47888774
No 343
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=50.82 E-value=51 Score=38.51 Aligned_cols=104 Identities=16% Similarity=0.189 Sum_probs=59.7
Q ss_pred HHHHHHcCCCCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEE
Q 008629 259 ELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC 338 (559)
Q Consensus 259 ~lL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~ 338 (559)
.+++||..++=.|+-... .++.|- ...++.||+++|.|..|.-+.-.|+. .|+ .+|.
T Consensus 101 a~lERYaaqI~F~~~fs~----------s~~~rF--~~qR~akVlVlG~Gg~~s~lv~sL~~-----sG~------~~I~ 157 (637)
T TIGR03693 101 ALLDRYAAQIEFIEADAD----------SGALKF--ELSRNAKILAAGSGDFLTKLVRSLID-----SGF------PRFH 157 (637)
T ss_pred HHHHHHHHHHHHHHHhcc----------Cchhhh--hhhhcccEEEEecCchHHHHHHHHHh-----cCC------CcEE
Confidence 478999877655543321 112222 22389999999999988777666654 487 7898
Q ss_pred EEcccCccccCCcCCCchhchhhccc-c----------CCCCCHHHHhcccCCcEEEeccCCC
Q 008629 339 LVDSKGLIVSSRKDSLQHFKKPWAHE-H----------EPVNNLLDAVKVIKPTILIGSSGVG 390 (559)
Q Consensus 339 lvD~~GLi~~~R~~~l~~~k~~fA~~-~----------~~~~~L~e~V~~vkPtvLIG~S~~~ 390 (559)
.+|.+=. ..+.. .+.+. .+-|++ . ....++.++++. -|++|=+|..+
T Consensus 158 ~vd~D~v-~SNln-RIgEl-~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~--~DiVi~vsDdy 215 (637)
T TIGR03693 158 AIVTDAE-EHALD-RIHEL-AEIAEETDDALLVQEIDFAEDQHLHEAFEP--ADWVLYVSDNG 215 (637)
T ss_pred EEecccc-chhhh-HHHHH-HHHHHHhCCCCceEeccCCcchhHHHhhcC--CcEEEEECCCC
Confidence 8876644 22211 01122 333332 1 112357777765 57777766655
No 344
>PRK06753 hypothetical protein; Provisional
Probab=50.77 E-value=19 Score=37.54 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=17.7
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 008629 301 RFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~ 320 (559)
+|+|+|||.||+..|..|.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~ 21 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE 21 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 79999999999999888865
No 345
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=50.63 E-value=61 Score=35.78 Aligned_cols=120 Identities=23% Similarity=0.271 Sum_probs=83.1
Q ss_pred ecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCc
Q 008629 272 NDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK 351 (559)
Q Consensus 272 nDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~ 351 (559)
.|.-.||+--++-|++. .|..-+....+|+.|=|--|-|||..+.. .|. ++++.+-
T Consensus 185 FDNrYGtgqS~~DgI~R---aTn~liaGK~vVV~GYG~vGrG~A~~~rg-----~GA-------~ViVtEv--------- 240 (420)
T COG0499 185 FDNRYGTGQSLLDGILR---ATNVLLAGKNVVVAGYGWVGRGIAMRLRG-----MGA-------RVIVTEV--------- 240 (420)
T ss_pred cccccccchhHHHHHHh---hhceeecCceEEEecccccchHHHHHhhc-----CCC-------eEEEEec---------
Confidence 36778999999999875 56677888999999999999999988754 252 3443322
Q ss_pred CCCchhchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHH
Q 008629 352 DSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEE 426 (559)
Q Consensus 352 ~~l~~~k~~fA~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~Ectped 426 (559)
++.+.-=|. +.=..-++.||++. .|++|=+++.-++.+.|-++.|. +.-| . .|-- -.-|+..+.
T Consensus 241 ---DPI~AleA~MdGf~V~~m~~Aa~~--gDifiT~TGnkdVi~~eh~~~Mk---DgaI-l--~N~GHFd~EI~~~~ 306 (420)
T COG0499 241 ---DPIRALEAAMDGFRVMTMEEAAKT--GDIFVTATGNKDVIRKEHFEKMK---DGAI-L--ANAGHFDVEIDVAG 306 (420)
T ss_pred ---CchHHHHHhhcCcEEEEhHHhhhc--CCEEEEccCCcCccCHHHHHhcc---CCeE-E--ecccccceeccHHH
Confidence 111111111 22223478999997 89999999999999999999996 3334 3 3422 235666654
No 346
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=50.57 E-value=21 Score=39.35 Aligned_cols=34 Identities=21% Similarity=0.394 Sum_probs=27.7
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
...+|+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~-----~G~-------~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLAR-----AGH-------KVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 46799999999999999988764 353 58889875
No 347
>PRK07045 putative monooxygenase; Reviewed
Probab=50.57 E-value=19 Score=37.87 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.5
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 008629 300 HRFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~ 320 (559)
-+|+|+|||.||+..|-.|.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~ 26 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGA 26 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHh
Confidence 479999999999999988765
No 348
>PRK05866 short chain dehydrogenase; Provisional
Probab=50.38 E-value=50 Score=33.75 Aligned_cols=39 Identities=28% Similarity=0.403 Sum_probs=24.6
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 294 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 294 g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+..+++.+++|.||++ ||...++..+.+ .|. +++++|++
T Consensus 35 ~~~~~~k~vlItGasg---gIG~~la~~La~-~G~-------~Vi~~~R~ 73 (293)
T PRK05866 35 PVDLTGKRILLTGASS---GIGEAAAEQFAR-RGA-------TVVAVARR 73 (293)
T ss_pred CcCCCCCEEEEeCCCc---HHHHHHHHHHHH-CCC-------EEEEEECC
Confidence 4557778999999843 344444444444 363 68888775
No 349
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=50.30 E-value=18 Score=39.87 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=18.4
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 008629 300 HRFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~ 320 (559)
-.|+|+|||.||...|..+..
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~ 60 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAK 60 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 479999999999999988765
No 350
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=49.91 E-value=20 Score=35.37 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=24.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
.|+|+|||.||+..|-.|.+ .|+ ++.++|+..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~-----~g~-------~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD-----KGL-------RVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccC
Confidence 48999999999999877754 364 577888764
No 351
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=49.72 E-value=22 Score=43.11 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=31.2
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc----Cccc
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK----GLIV 347 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~----GLi~ 347 (559)
-...||+|+|+|.||+..|..|... |. ++.++|+. |++.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~-----G~-------~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVE-----GF-------PVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeeCCCCCceEE
Confidence 4579999999999999999998753 64 57888875 5554
No 352
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.37 E-value=67 Score=35.01 Aligned_cols=117 Identities=16% Similarity=0.239 Sum_probs=63.7
Q ss_pred ccc-ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHh
Q 008629 297 LAE-HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 375 (559)
Q Consensus 297 l~d-~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V 375 (559)
+.. +||+|+|.|-.|++.+.+|... .| .-++...|.+=. ....+.|.. ...+.... .+. +.+
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~----~~------~~~v~~~D~~~~--~~~~~~l~~-g~~~~~g~---~~~-~~~ 66 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKY----QP------QLTVKVIDTRET--PPGQEQLPE-DVELHSGG---WNL-EWL 66 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhc----CC------CCeEEEEeCCCC--chhHHHhhc-CCEEEeCC---CCh-HHh
Confidence 344 6899999999999999998753 22 024777886421 100011211 11111110 011 223
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCceeCCeee
Q 008629 376 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVF 453 (559)
Q Consensus 376 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~pv~~~G~~~ 453 (559)
. ++|.+|=-++.+ --++++.++.. ..-||+ +.+|. ++.+.+.+.|-.||| ||||-
T Consensus 67 ~--~~d~vV~SpgI~-~~~p~~~~a~~--~gi~i~-------~~~el----~~~~~~~~~I~VTGT-------nGKTT 121 (438)
T PRK04663 67 L--EADLVVTNPGIA-LATPEIQQVLA--AGIPVV-------GDIEL----FAWAVDKPVIAITGS-------NGKST 121 (438)
T ss_pred c--cCCEEEECCCCC-CCCHHHHHHHH--CCCcEE-------EHHHH----HHhhcCCCEEEEeCC-------CCHHH
Confidence 3 378777555655 34677766654 346664 33333 233345678888997 77753
No 353
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=49.18 E-value=74 Score=31.65 Aligned_cols=78 Identities=13% Similarity=0.221 Sum_probs=43.3
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchh----chhhcc-ccCCCCCHHHH
Q 008629 301 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF----KKPWAH-EHEPVNNLLDA 374 (559)
Q Consensus 301 riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~----k~~fA~-~~~~~~~L~e~ 374 (559)
||+|.|| |..|-.+++.|+.. |- ..+++.+|+... ..+.+.+... ...+.. +.....++.++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-----~~-----~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 68 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-----HP-----DAEVIVLDKLTY--AGNLENLADLEDNPRYRFVKGDIGDRELVSRL 68 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-----CC-----CCEEEEecCCCc--chhhhhhhhhccCCCcEEEEcCCcCHHHHHHH
Confidence 5788887 77887777777542 31 135777775211 0111111111 111111 22223468888
Q ss_pred hcccCCcEEEeccCCC
Q 008629 375 VKVIKPTILIGSSGVG 390 (559)
Q Consensus 375 V~~vkPtvLIG~S~~~ 390 (559)
++..+||++|=+++..
T Consensus 69 ~~~~~~d~vi~~a~~~ 84 (317)
T TIGR01181 69 FTEHQPDAVVHFAAES 84 (317)
T ss_pred HhhcCCCEEEEccccc
Confidence 8888899999988753
No 354
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=48.91 E-value=77 Score=34.53 Aligned_cols=31 Identities=13% Similarity=0.023 Sum_probs=24.0
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCC
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAP 329 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s 329 (559)
..|...|++|+|.+.-..++++.+... .|+.
T Consensus 284 ~~l~Gk~vai~~~~~~~~~la~~l~~e----lG~~ 314 (415)
T cd01977 284 ERLKGKKVCIWTGGPKLWHWTKVIEDE----LGMQ 314 (415)
T ss_pred HHcCCCEEEEECCCchHHHHHHHHHHh----cCCE
Confidence 456789999998888888999887643 4873
No 355
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=48.55 E-value=19 Score=37.63 Aligned_cols=32 Identities=19% Similarity=0.427 Sum_probs=24.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
-.|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 37 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ-----SGL-------RVALLAPR 37 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 469999999999999977764 364 57777765
No 356
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=48.48 E-value=20 Score=38.96 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=26.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
-.+||+|||+||+..|..+.+. | .++.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~-----G-------~~V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQL-----G-------LKVAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEeccc
Confidence 3699999999999999887653 5 4788999864
No 357
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=48.47 E-value=25 Score=28.68 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=23.2
Q ss_pred EeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCc
Q 008629 304 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 345 (559)
Q Consensus 304 ~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 345 (559)
|+|||.+|+..|-.|.+. | .+|.++|++--
T Consensus 1 IiGaG~sGl~aA~~L~~~-----g-------~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-----G-------YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-----T-------SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHC-----C-------CcEEEEecCcc
Confidence 789999999999888653 4 47999988643
No 358
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=48.44 E-value=12 Score=44.64 Aligned_cols=130 Identities=22% Similarity=0.344 Sum_probs=80.0
Q ss_pred HHHcCCCCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEc
Q 008629 262 AKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVD 341 (559)
Q Consensus 262 ~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD 341 (559)
.||-.++-||.++-| ++|.++++.++|||+.|+-.-+-+.. .|+.--+. +.|.+.|
T Consensus 411 sRYD~qiavfG~~fq------------------eKL~~~~~FlVGaGAIGCE~LKN~am-----~Gvg~g~~-g~ItVTD 466 (1013)
T KOG2012|consen 411 SRYDGQIAVFGAKFQ------------------EKLADQKVFLVGAGAIGCELLKNFAL-----MGVGCGNS-GKITVTD 466 (1013)
T ss_pred CccccchhhhchHHH------------------HHHhhCcEEEEccchhhHHHHHhhhh-----eeeccCCC-CceEEec
Confidence 467778888877655 78999999999999999766555543 26532221 3577777
Q ss_pred ccCccccCCcCCCchhchhhc-ccc--CCC--CCHHHHhcccCCcEEEe-------ccCCCCCCCHHHHHHHHcCCCCcE
Q 008629 342 SKGLIVSSRKDSLQHFKKPWA-HEH--EPV--NNLLDAVKVIKPTILIG-------SSGVGRTFTKEVIEAMASFNEKPL 409 (559)
Q Consensus 342 ~~GLi~~~R~~~l~~~k~~fA-~~~--~~~--~~L~e~V~~vkPtvLIG-------~S~~~g~Ft~evv~~Ma~~~erPI 409 (559)
-+ +|.++ +|+. .|- |+. ... ..-.+|+...+|++.|= --+ -++|+.+--+..- =+
T Consensus 467 mD-~IEkS---NLnR---QFLFR~~dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeT-E~If~D~Ff~~ld-----~V 533 (1013)
T KOG2012|consen 467 MD-HIEKS---NLNR---QFLFRPWDVGKPKSEVAAAAARGMNPDLNIIALQNRVGPET-EHIFNDEFFENLD-----GV 533 (1013)
T ss_pred cc-hhhhc---cccc---eeeccccccCchHHHHHHHHHHhcCCCceeeehhhccCccc-ccccchhHHhhhH-----HH
Confidence 65 34433 2542 222 221 111 23668899999999873 233 2478777666553 12
Q ss_pred EEecCCCCCCCCCCHHHHhcccCCcEEE
Q 008629 410 ILALSNPTSQSECTAEEAYTWSKGRAIF 437 (559)
Q Consensus 410 IFaLSNPt~~~EctpedA~~wt~G~aif 437 (559)
+=||=|= ||-.|-|+||+|
T Consensus 534 anALDNV---------dAR~YvD~RCv~ 552 (1013)
T KOG2012|consen 534 ANALDNV---------DARRYVDRRCVY 552 (1013)
T ss_pred HHhhcch---------hhhhhhhhhhhh
Confidence 2344442 567777888877
No 359
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=48.32 E-value=26 Score=35.98 Aligned_cols=34 Identities=29% Similarity=0.366 Sum_probs=24.9
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
+--++|+|||+||+..|..|.+. |+ ++.+++++=
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~-----g~-------kV~v~E~~~ 50 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKA-----GL-------KVAVIERKL 50 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHH-----TS--------EEEEESSS
T ss_pred cCCEEEECCChhHHHHHHHHHHC-----CC-------eEEEEecCC
Confidence 45689999999999999887764 65 688888763
No 360
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=48.18 E-value=2.1e+02 Score=33.81 Aligned_cols=107 Identities=16% Similarity=0.041 Sum_probs=57.9
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCC--------CCCCHHHHhcccCCcEEEeeCCCCC
Q 008629 373 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ--------SECTAEEAYTWSKGRAIFASGSPFD 444 (559)
Q Consensus 373 e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~--------~EctpedA~~wt~G~aifAsGSPF~ 444 (559)
+.=+.++|+++|..++.+ +.-.-+.....+-+|=|.+=.-||... .+-|-+++.++... |+..-=..
T Consensus 410 ~le~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~---~~~~~gk~ 484 (708)
T PRK11154 410 EVEQNCAPHTIFASNTSS--LPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVA---LAKKQGKT 484 (708)
T ss_pred HHHhhCCCCcEEEECCCC--CCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHH---HHHHcCCc
Confidence 333456899999877743 555555444455566688888998752 23343344332110 11111123
Q ss_pred CceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHH
Q 008629 445 PFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS 488 (559)
Q Consensus 445 pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA 488 (559)
||.. .+.||..=|-..+|-+--++.+..-- ++.+-+-.|.
T Consensus 485 pv~v---~d~pGfi~nRl~~~~~~EA~~lv~eG-v~~~dID~a~ 524 (708)
T PRK11154 485 PIVV---RDGAGFYVNRILAPYINEAARLLLEG-EPIEHIDAAL 524 (708)
T ss_pred eEEE---eccCcHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 4444 24677777777777666555554432 3444444443
No 361
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=48.13 E-value=1e+02 Score=34.30 Aligned_cols=30 Identities=10% Similarity=-0.032 Sum_probs=23.1
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCC
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 328 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~ 328 (559)
..|...|++++|.+.=..++++.+... .|+
T Consensus 321 ~~L~GkrvaI~~~~~~~~~l~~~l~~E----lGm 350 (457)
T TIGR01284 321 ERLRGKKVWVWSGGPKLWHWPRPLEDE----LGM 350 (457)
T ss_pred HHcCCCEEEEECCCcHHHHHHHHHHHh----CCC
Confidence 456778999998888888888887642 477
No 362
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=48.02 E-value=53 Score=33.56 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=24.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
||.|+|+|..|..+|..+... |. +++++|+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-----G~-------~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-----GY-------QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 588999999999999998753 53 57777765
No 363
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.94 E-value=83 Score=34.09 Aligned_cols=113 Identities=25% Similarity=0.332 Sum_probs=62.1
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhccc
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 378 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v 378 (559)
.+||+|+|.|-.|..+|+.+.+ .|. +++.+|.+ .. .+.. ..+..+.. ..+..+..+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~-----~G~-------~V~g~D~~----~~---~~~~--~~~~~~~~-~~~~~~~~~-- 58 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQ-----KGV-------YVIGVDKS----LE---ALQS--CPYIHERY-LENAEEFPE-- 58 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHH-----CCC-------EEEEEeCC----cc---ccch--hHHHhhhh-cCCcHHHhc--
Confidence 4689999999999888877764 363 58888864 11 1211 11111100 011222233
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCceeCCeee
Q 008629 379 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVF 453 (559)
Q Consensus 379 kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~pv~~~G~~~ 453 (559)
++|++|-..+.+ .-.+.+-++..+. -||| |++. . +-++..+.+.+.|-.||| ||||-
T Consensus 59 ~~dlvV~s~gi~-~~~~~l~~A~~~g--~~vv---~~~~----~-~~~~~~~~~~~~I~ITGT-------~GKTT 115 (418)
T PRK00683 59 QVDLVVRSPGIK-KEHPWVQAAIASH--IPVV---TDIQ----L-AFQTPEFTRYPSLGITGS-------TGKTT 115 (418)
T ss_pred CCCEEEECCCCC-CCcHHHHHHHHCC--CcEE---EHHH----H-HHhhhhcCCCCEEEEECC-------CChHH
Confidence 378899887776 4566666666543 3432 3321 1 112222224567888997 77753
No 364
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=47.92 E-value=20 Score=39.97 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=26.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
-.|||+|+|.+|++||..+.. .|+ ++.|+|+..
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rGl-------~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAG-----RGL-------SVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEecCC
Confidence 469999999999999988865 375 488888763
No 365
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=47.91 E-value=28 Score=37.69 Aligned_cols=85 Identities=9% Similarity=0.139 Sum_probs=46.6
Q ss_pred HHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhc-----
Q 008629 288 AALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA----- 362 (559)
Q Consensus 288 ~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA----- 362 (559)
.++.-....|...|++|+|.+.-..++++++.+ .|+. +..+-+. .... +.....+..+.
T Consensus 276 ~~l~~~~~~l~gkrv~i~~~~~~~~~la~~l~e-----lGm~-------v~~~~~~---~~~~-~~~~~~~~~~~~~~~v 339 (410)
T cd01968 276 PELAPYRARLEGKKAALYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTK-EDYERIKELLGEGTVI 339 (410)
T ss_pred HHHHHHHHHhCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEecc---cCCH-HHHHHHHHHhCCCcEE
Confidence 344444456778899999988888999987754 4873 2222111 1111 11111111110
Q ss_pred cccCCCCCHHHHhcccCCcEEEeccC
Q 008629 363 HEHEPVNNLLDAVKVIKPTILIGSSG 388 (559)
Q Consensus 363 ~~~~~~~~L~e~V~~vkPtvLIG~S~ 388 (559)
-...+...+.+.++..+||++||-|.
T Consensus 340 ~~~~~~~e~~~~i~~~~pDl~ig~s~ 365 (410)
T cd01968 340 VDDANPRELKKLLKEKKADLLVAGGK 365 (410)
T ss_pred EeCCCHHHHHHHHhhcCCCEEEECCc
Confidence 00111124678888999999999755
No 366
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=47.89 E-value=22 Score=38.46 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=27.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
-.|||+|||+||+..|..+.+ .| .++.++|++.
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~-----~g-------~~V~liE~~~ 36 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLAS-----AG-------KKVALVEESK 36 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHh-----CC-------CEEEEEecCC
Confidence 469999999999999988865 36 4699999863
No 367
>PRK06392 homoserine dehydrogenase; Provisional
Probab=47.78 E-value=72 Score=34.14 Aligned_cols=83 Identities=16% Similarity=0.235 Sum_probs=49.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHH-HhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc---ccCCCC--CHHHH
Q 008629 301 RFLFLGAGEAGTGIAELIALEIS-KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVN--NLLDA 374 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~-~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~---~~~~~~--~L~e~ 374 (559)
||.++|.|..|-+++++|.+.-. ++.|+. -+=+.+.|++|-+.+.++=++.+....-.+ ...... ++.+.
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~----l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~l 77 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNG----ISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEI 77 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCC----eEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHH
Confidence 79999999999999999876210 112321 123556799998887653122222110010 001112 57776
Q ss_pred hcccCCcEEEeccC
Q 008629 375 VKVIKPTILIGSSG 388 (559)
Q Consensus 375 V~~vkPtvLIG~S~ 388 (559)
++ .+|||+|=+++
T Consensus 78 l~-~~~DVvVE~t~ 90 (326)
T PRK06392 78 FE-IKPDVIVDVTP 90 (326)
T ss_pred hc-CCCCEEEECCC
Confidence 65 58999999884
No 368
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=47.74 E-value=15 Score=39.85 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=26.2
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
..+..||||+|+|.||+..|+.|.. . .-+|.++|.+
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~-----~-------~~~ItlI~~~ 42 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDP-----K-------KYNITVISPR 42 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCc-----C-------CCeEEEEcCC
Confidence 4556799999999999988766521 1 1358888864
No 369
>PRK12829 short chain dehydrogenase; Provisional
Probab=47.71 E-value=64 Score=31.38 Aligned_cols=37 Identities=27% Similarity=0.413 Sum_probs=23.1
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+++.+++|.||.. ||...++..+.+ .|. ++++++++
T Consensus 8 ~~~~~~vlItGa~g---~iG~~~a~~L~~-~g~-------~V~~~~r~ 44 (264)
T PRK12829 8 PLDGLRVLVTGGAS---GIGRAIAEAFAE-AGA-------RVHVCDVS 44 (264)
T ss_pred ccCCCEEEEeCCCC---cHHHHHHHHHHH-CCC-------EEEEEeCC
Confidence 37889999999842 344444444443 363 58887753
No 370
>PF05511 ATP-synt_F6: Mitochondrial ATP synthase coupling factor 6; InterPro: IPR008387 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit F6 (or coupling factor 6) found in the F0 complex of F-ATPases in mitochondria. The F6 subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit F6 in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_V 2CLY_C 1VZS_A.
Probab=47.67 E-value=17 Score=32.78 Aligned_cols=46 Identities=26% Similarity=0.556 Sum_probs=35.3
Q ss_pred hHHHHHH----hHhcC--CCCCcchhHhHHHHHHHHHHhhCCC---eeeeeccCC
Q 008629 208 VGKLALY----TALGG--IRPSAEYAELLDEFMSAVKQNYGEK---VLIQFEDFA 253 (559)
Q Consensus 208 iGKl~LY----~a~gG--I~P~~~y~~~vdefv~av~~~fGp~---~lIq~EDf~ 253 (559)
+-|+--| +..|| +||.++|..-++|=+.-+.+.||.. -+.+|=+|.
T Consensus 42 ldKIREY~~Ksks~gGklVD~~Pe~~kel~eel~kL~r~YG~g~~~Dm~kFP~Fk 96 (99)
T PF05511_consen 42 LDKIREYNQKSKSSGGKLVDAGPEYEKELNEELEKLARQYGGGSGVDMTKFPTFK 96 (99)
T ss_dssp HHHHHHHHHHHTTTSS-STT--THHHHHHHHHHHHHHHHHHSS---TTTS-SS--
T ss_pred HHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHHHHHhCCcccccHHhCCCCC
Confidence 6889999 66888 9999999999999999999999986 666666654
No 371
>PRK05993 short chain dehydrogenase; Provisional
Probab=47.64 E-value=41 Score=33.73 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=19.9
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 300 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 300 ~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+++|.|| |..|..+|+.+. + .|. ++++++++
T Consensus 5 k~vlItGasggiG~~la~~l~----~-~G~-------~Vi~~~r~ 37 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQ----S-DGW-------RVFATCRK 37 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHH----H-CCC-------EEEEEECC
Confidence 57899998 445555555543 3 363 58877764
No 372
>PLN02240 UDP-glucose 4-epimerase
Probab=47.37 E-value=39 Score=34.78 Aligned_cols=107 Identities=17% Similarity=0.180 Sum_probs=58.7
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch------hchhhcc-ccCC
Q 008629 296 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH------FKKPWAH-EHEP 367 (559)
Q Consensus 296 ~l~d~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~------~k~~fA~-~~~~ 367 (559)
.|...||+|.|| |--|-.+++.|++ .| .+++++|+..--.......+.. ....+.. +..+
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~-----~g-------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 69 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLL-----AG-------YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRD 69 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHH-----CC-------CEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCC
Confidence 466789999997 7778777777765 25 3578887542100000000000 0111111 1122
Q ss_pred CCCHHHHhcccCCcEEEeccCCCCC----------------CCHHHHHHHHcCCCCcEEEecC
Q 008629 368 VNNLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILALS 414 (559)
Q Consensus 368 ~~~L~e~V~~vkPtvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIFaLS 414 (559)
..++.++++..+||++|=+.+.... -+..+++.|.+.+-+.+||.=|
T Consensus 70 ~~~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 132 (352)
T PLN02240 70 KEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSS 132 (352)
T ss_pred HHHHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 2357777776789999988765321 1235667776655567887533
No 373
>PLN02463 lycopene beta cyclase
Probab=47.36 E-value=21 Score=39.54 Aligned_cols=32 Identities=22% Similarity=0.538 Sum_probs=25.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
-.|+|+|||.||..+|..+.+ .|+ ++.++|+.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~-----~Gl-------~V~liE~~ 60 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSE-----AGL-------SVCCIDPS 60 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----CCC-------eEEEeccC
Confidence 479999999999999988754 365 57777764
No 374
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=46.92 E-value=1.1e+02 Score=31.08 Aligned_cols=88 Identities=20% Similarity=0.245 Sum_probs=53.2
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhccc
Q 008629 300 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 378 (559)
Q Consensus 300 ~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v 378 (559)
.||.++|+ |..|-.+++.+... .++ +-..++|++. ++.... ..+ +.....++.++++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~----~~~------elvav~d~~~----~~~~~~----~~~--~i~~~~dl~~ll~-- 59 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA----EDL------ELVAAVDRPG----SPLVGQ----GAL--GVAITDDLEAVLA-- 59 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC----CCC------EEEEEEecCC----cccccc----CCC--CccccCCHHHhcc--
Confidence 48999999 99998888776541 232 3355677652 111111 111 1112367888886
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEe
Q 008629 379 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 412 (559)
Q Consensus 379 kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 412 (559)
+||++|=+|.+. ...++++...+. ..|+|..
T Consensus 60 ~~DvVid~t~p~--~~~~~~~~al~~-G~~vvig 90 (257)
T PRK00048 60 DADVLIDFTTPE--ATLENLEFALEH-GKPLVIG 90 (257)
T ss_pred CCCEEEECCCHH--HHHHHHHHHHHc-CCCEEEE
Confidence 599999888543 346666665544 5788855
No 375
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=46.76 E-value=40 Score=36.84 Aligned_cols=110 Identities=19% Similarity=0.275 Sum_probs=61.5
Q ss_pred eEEEeCcChHHHH-HHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 008629 301 RFLFLGAGEAGTG-IAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 379 (559)
Q Consensus 301 riv~~GAGsAgiG-ia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 379 (559)
+|.|+|.|-+|++ +|++|.+ .|. ++...|.+--- ..+.|......+- .. .+ .+.++ +
T Consensus 1 ~~~~iGiggsGm~~la~~L~~-----~G~-------~v~~~D~~~~~---~~~~l~~~gi~~~---~g-~~-~~~~~--~ 58 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLN-----RGY-------QVSGSDIAENA---TTKRLEALGIPIY---IG-HS-AENLD--D 58 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHH-----CCC-------eEEEECCCcch---HHHHHHHCcCEEe---CC-CC-HHHCC--C
Confidence 5899999999998 9998875 374 57788864211 1111221111111 01 11 12333 3
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc-CCcEEEeeCCCCCCceeCCeee
Q 008629 380 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS-KGRAIFASGSPFDPFEYNGKVF 453 (559)
Q Consensus 380 PtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt-~G~aifAsGSPF~pv~~~G~~~ 453 (559)
+|.+|=-++.+ --++++.++.. ...||+ +.+|. ++.+. +.+.|-.||| ||||-
T Consensus 59 ~d~vV~spgi~-~~~p~~~~a~~--~~i~v~-------~~~el----~~~~~~~~~~IaITGT-------nGKTT 112 (448)
T TIGR01082 59 ADVVVVSAAIK-DDNPEIVEAKE--RGIPVI-------RRAEM----LAELMRFRHSIAVAGT-------HGKTT 112 (448)
T ss_pred CCEEEECCCCC-CCCHHHHHHHH--cCCceE-------eHHHH----HHHHHhcCcEEEEECC-------CChHH
Confidence 78888666665 35677777655 356665 33443 22332 3467778886 67654
No 376
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=46.66 E-value=24 Score=37.62 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=26.1
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
...|+|+|||.||+..|-.|.. .|+ ++.++++.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~-----~G~-------~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR-----AGL-------DVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEccC
Confidence 3579999999999999888765 475 56777776
No 377
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=46.28 E-value=20 Score=37.44 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=17.8
Q ss_pred EEEeCcChHHHHHHHHHHHH
Q 008629 302 FLFLGAGEAGTGIAELIALE 321 (559)
Q Consensus 302 iv~~GAGsAgiGia~ll~~~ 321 (559)
|+|+|||.||+..|-.|.+.
T Consensus 2 v~IvGaG~aGl~~A~~L~~~ 21 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRL 21 (382)
T ss_pred EEEECccHHHHHHHHHHhcC
Confidence 79999999999999888763
No 378
>PLN02676 polyamine oxidase
Probab=46.16 E-value=50 Score=36.84 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.1
Q ss_pred ccceEEEeCcChHHHHHHHHHHH
Q 008629 298 AEHRFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~ 320 (559)
...+++|+|||.+|+..|..|.+
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~ 47 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSE 47 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH
Confidence 35579999999999999998876
No 379
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=46.06 E-value=22 Score=38.62 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=18.3
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 008629 300 HRFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~ 320 (559)
-.|+|+|||.||...|-.+.+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~ 26 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR 26 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh
Confidence 479999999999999988765
No 380
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=45.99 E-value=1.4e+02 Score=30.68 Aligned_cols=145 Identities=21% Similarity=0.270 Sum_probs=72.0
Q ss_pred cCcchHHHHHhcCCCCCeeEEEEecCceecccCCCCCccccchhHHHHHHhHhcCCCCCcchhHhHHHHHHHHHHhhCC-
Q 008629 165 KEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSAEYAELLDEFMSAVKQNYGE- 243 (559)
Q Consensus 165 ~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~iGKl~LY~a~gGI~P~~~y~~~vdefv~av~~~fGp- 243 (559)
+-..++.+.+.++-.++.+++||+-|..-.|..=++..+-+-.+-......++| + ..++.-|..++ ..+|=
T Consensus 31 ~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~l~~~~~~~~~~~~~a~aa~G------q-~~l~~~~~~~~-~~~g~~ 102 (266)
T PRK12314 31 ERIEQLVFVISDLMNKGKEVILVSSGAIGAGLTKLKLDKRPTSLAEKQALAAVG------Q-PELMSLYSKFF-AEYGIV 102 (266)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEeeCcccccceeeccccCCCCHHHHHHHHHHh------H-HHHHHHHHHHH-HHcCCe
Confidence 333445555555555667899998875544443333222221111123333333 1 22333333333 33443
Q ss_pred --CeeeeeccCCCC----cHHHHHHHHc--CCCCeee-cCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHH
Q 008629 244 --KVLIQFEDFANH----NAFELLAKYG--TTHLVFN-DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGI 314 (559)
Q Consensus 244 --~~lIq~EDf~~~----~Af~lL~ryr--~~~~~Fn-DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGi 314 (559)
.+|+.-+||.+. |+.+.|+++- .-+|+.| +|.=+|. +.+..+.+
T Consensus 103 ~~q~llT~~~~~~~~~~~~~~~~l~~ll~~g~IPVv~~nd~v~~~-------------------~~~~~~~~-------- 155 (266)
T PRK12314 103 VAQILLTRDDFDSPKSRANVKNTFESLLELGILPIVNENDAVATD-------------------EIDTKFGD-------- 155 (266)
T ss_pred EEEEEEecccccchHHHHHHHHHHHHHHHCCCEEEEcCCCCeeec-------------------cccceecc--------
Confidence 447777888765 3455666663 3578887 2321110 11112222
Q ss_pred HHHHHHHHHHhcCCChhhhcccEEEEcccCccccC
Q 008629 315 AELIALEISKQTKAPVEETRKKICLVDSKGLIVSS 349 (559)
Q Consensus 315 a~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~ 349 (559)
.|.+...+....+ |..=+++-|-+|+.+++
T Consensus 156 ~D~~Aa~lA~~l~-----Ad~liilTDVdGVy~~d 185 (266)
T PRK12314 156 NDRLSAIVAKLVK-----ADLLIILSDIDGLYDKN 185 (266)
T ss_pred hHHHHHHHHHHhC-----CCEEEEEeCCCcccCCC
Confidence 3555554443323 44557789999998765
No 381
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=45.99 E-value=24 Score=38.37 Aligned_cols=31 Identities=26% Similarity=0.616 Sum_probs=25.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+++|+|||.||+.+|..|.+ .| .++.++|+.
T Consensus 3 DvvIIGaG~aGlsaA~~La~-----~G-------~~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQ-----LN-------KRVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEecC
Confidence 58999999999999988764 25 468888874
No 382
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=45.94 E-value=30 Score=36.76 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=29.1
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCc
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 345 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 345 (559)
++-.|+|+|||.+|+.+|-.|.+. .|. +++.++|++.+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~----~g~------~~V~vle~~~~ 66 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKE----HGI------TNVAVLEKGWL 66 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHh----cCC------CeEEEEEcccc
Confidence 455799999999999999888752 253 46889988643
No 383
>PRK14852 hypothetical protein; Provisional
Probab=45.78 E-value=20 Score=43.75 Aligned_cols=38 Identities=21% Similarity=0.153 Sum_probs=33.1
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+|+..||+|+|+|..|.-||..|+.+ |+ ++|.++|-+
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAra-----GV------G~I~L~D~D 365 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLART-----GI------GNFNLADFD 365 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 478999999999998888888888764 87 789999987
No 384
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=45.75 E-value=26 Score=37.04 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=24.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+|+|+|||.||...|-.|.+ .|+ ++.++|+.
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~l~E~~ 35 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAK-----QGR-------SVAVIEGG 35 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEcCC
Confidence 579999999999999977754 375 46677754
No 385
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=45.64 E-value=20 Score=37.79 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=26.3
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
...|+|+|||.+|+..|-.|.+ .|+ ++.++|+.-
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~-----~G~-------~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALAD-----AGL-------SVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 3579999999999999977654 375 477888753
No 386
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=45.63 E-value=26 Score=38.23 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=27.0
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
...+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~-----~g-------~~V~lie~~ 172 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLAR-----KG-------YDVTIFEAR 172 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEccC
Confidence 45799999999999999887754 35 368888875
No 387
>PRK07588 hypothetical protein; Provisional
Probab=45.60 E-value=25 Score=37.08 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=17.7
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 008629 301 RFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~ 320 (559)
+|+|+|+|.||+..|-.|.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~ 21 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRR 21 (391)
T ss_pred eEEEECccHHHHHHHHHHHH
Confidence 79999999999999988764
No 388
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=45.22 E-value=30 Score=37.06 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=26.2
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccc
Q 008629 302 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 347 (559)
Q Consensus 302 iv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~ 347 (559)
|+|+|||.||+.+|-.|.+. ..|+ ++.++|+.-.+.
T Consensus 2 viIvGaG~AGl~lA~~L~~~---~~g~-------~V~lle~~~~~~ 37 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA---RPDF-------RIRVIEAGRTIG 37 (370)
T ss_pred EEEECccHHHHHHHHHHHhc---CCCC-------eEEEEeCCCCCC
Confidence 79999999999999777653 1253 577887765443
No 389
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=45.18 E-value=35 Score=29.59 Aligned_cols=90 Identities=11% Similarity=0.162 Sum_probs=51.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCC
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKP 380 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkP 380 (559)
||.|+|+|..|.....-+... ..+. +-..++|++. +....+.+.|-- +...++.|.++.-++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~---~~~~------~v~~v~d~~~-------~~~~~~~~~~~~--~~~~~~~~ll~~~~~ 63 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRS---SPDF------EVVAVCDPDP-------ERAEAFAEKYGI--PVYTDLEELLADEDV 63 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHT---TTTE------EEEEEECSSH-------HHHHHHHHHTTS--EEESSHHHHHHHTTE
T ss_pred EEEEECCcHHHHHHHHHHHhc---CCCc------EEEEEEeCCH-------HHHHHHHHHhcc--cchhHHHHHHHhhcC
Confidence 899999999976665544432 0111 2244566531 112222222221 234789999998889
Q ss_pred cEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 008629 381 TILIGSSGVGRTFTKEVIEAMASFNEKPLIL 411 (559)
Q Consensus 381 tvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 411 (559)
|+++ +++.. ....++++...+... +|+.
T Consensus 64 D~V~-I~tp~-~~h~~~~~~~l~~g~-~v~~ 91 (120)
T PF01408_consen 64 DAVI-IATPP-SSHAEIAKKALEAGK-HVLV 91 (120)
T ss_dssp SEEE-EESSG-GGHHHHHHHHHHTTS-EEEE
T ss_pred CEEE-EecCC-cchHHHHHHHHHcCC-EEEE
Confidence 9888 55544 356666666554333 5554
No 390
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=45.14 E-value=17 Score=31.85 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=27.0
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
+|++.++|++|+|..|.-=+++|+++ | .++.++...-
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~-----g-------A~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEA-----G-------AKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCC-----T-------BEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEECCch
Confidence 57899999999999998887777653 4 4688777763
No 391
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=45.11 E-value=1.2e+02 Score=28.68 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=18.9
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHH
Q 008629 379 KPTILIGSSGVGRTFTKEVIEAMA 402 (559)
Q Consensus 379 kPtvLIG~S~~~g~Ft~evv~~Ma 402 (559)
+-|++|++|..| -|+++++.+.
T Consensus 101 ~~Dv~I~iS~SG--~t~~~i~~~~ 122 (177)
T cd05006 101 PGDVLIGISTSG--NSPNVLKALE 122 (177)
T ss_pred CCCEEEEEeCCC--CCHHHHHHHH
Confidence 479999999877 4999999885
No 392
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=45.03 E-value=41 Score=34.55 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=28.7
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEecCCCC
Q 008629 378 IKPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPT 417 (559)
Q Consensus 378 vkPtvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNPt 417 (559)
-+-|++||.|..|. |+++++.+. +...-|+|.=-+||.
T Consensus 117 ~~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~I~It~~~~ 156 (257)
T cd05007 117 TERDVVIGIAASGR--TPYVLGALRYARARGALTIGIACNPG 156 (257)
T ss_pred CCCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 35799999999885 899998874 444557777667776
No 393
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=44.99 E-value=61 Score=34.10 Aligned_cols=38 Identities=29% Similarity=0.297 Sum_probs=28.0
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHc--CCCCcEEEecCCCCC
Q 008629 379 KPTILIGSSGVGRTFTKEVIEAMAS--FNEKPLILALSNPTS 418 (559)
Q Consensus 379 kPtvLIG~S~~~g~Ft~evv~~Ma~--~~erPIIFaLSNPt~ 418 (559)
+-|++||.|..|. |++++..+.. ...-|+|.=-+||.+
T Consensus 131 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~tI~IT~~~~s 170 (299)
T PRK05441 131 AKDVVVGIAASGR--TPYVIGALEYARERGALTIGISCNPGS 170 (299)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 5799999999875 9999998753 334466665666763
No 394
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=44.95 E-value=47 Score=34.94 Aligned_cols=38 Identities=29% Similarity=0.367 Sum_probs=28.5
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCC--CCcEEEecCCCCC
Q 008629 379 KPTILIGSSGVGRTFTKEVIEAMASFN--EKPLILALSNPTS 418 (559)
Q Consensus 379 kPtvLIG~S~~~g~Ft~evv~~Ma~~~--erPIIFaLSNPt~ 418 (559)
+-|++||+|..|. |++++..+.... .-|+|.=-+||.+
T Consensus 126 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~tIaIT~~~~s 165 (291)
T TIGR00274 126 KNDVVVGIAASGR--TPYVIAGLQYARSLGALTISIACNPKS 165 (291)
T ss_pred CCCEEEEEeCCCC--cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 5699999999775 999999875433 3477776677773
No 395
>PRK08244 hypothetical protein; Provisional
Probab=44.87 E-value=25 Score=38.65 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.5
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 008629 300 HRFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~ 320 (559)
..|+|+|||.+|+..|-.|..
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~ 23 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELAL 23 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHH
Confidence 469999999999999988865
No 396
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=44.85 E-value=13 Score=32.19 Aligned_cols=98 Identities=14% Similarity=0.133 Sum_probs=51.6
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc-ccCCCCCHHHHhcccCC
Q 008629 302 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVIKP 380 (559)
Q Consensus 302 iv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~-~~~~~~~L~e~V~~vkP 380 (559)
|||+|.|..|..+++.|... + .++.++|++--.. +.+.+...++.. +..+...|.+ ..--++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-----~-------~~vvvid~d~~~~----~~~~~~~~~~i~gd~~~~~~l~~-a~i~~a 63 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-----G-------IDVVVIDRDPERV----EELREEGVEVIYGDATDPEVLER-AGIEKA 63 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-----T-------SEEEEEESSHHHH----HHHHHTTSEEEES-TTSHHHHHH-TTGGCE
T ss_pred eEEEcCCHHHHHHHHHHHhC-----C-------CEEEEEECCcHHH----HHHHhcccccccccchhhhHHhh-cCcccc
Confidence 79999999999999888752 2 4788898862111 111111111111 1111123444 344568
Q ss_pred cEEEeccCCCCCCCHHHHHHHHcCCC-CcEEEecCCCC
Q 008629 381 TILIGSSGVGRTFTKEVIEAMASFNE-KPLILALSNPT 417 (559)
Q Consensus 381 tvLIG~S~~~g~Ft~evv~~Ma~~~e-rPIIFaLSNPt 417 (559)
+.+|-++... .-+-.++....+.++ .+||.-+.||.
T Consensus 64 ~~vv~~~~~d-~~n~~~~~~~r~~~~~~~ii~~~~~~~ 100 (116)
T PF02254_consen 64 DAVVILTDDD-EENLLIALLARELNPDIRIIARVNDPE 100 (116)
T ss_dssp SEEEEESSSH-HHHHHHHHHHHHHTTTSEEEEEESSHH
T ss_pred CEEEEccCCH-HHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence 8888776532 233334434444345 56666666555
No 397
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=44.82 E-value=85 Score=31.31 Aligned_cols=97 Identities=16% Similarity=0.200 Sum_probs=50.8
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhc----hhhcc-ccCCCCCHHHH
Q 008629 301 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK----KPWAH-EHEPVNNLLDA 374 (559)
Q Consensus 301 riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k----~~fA~-~~~~~~~L~e~ 374 (559)
||+|.|| |..|..+++.|.+ .| .+++++|+. .....+.+.... ..+.. +..+..++.++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~-----~g-------~~V~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 65 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLE-----SG-------HEVVVLDNL---SNGSPEALKRGERITRVTFVEGDLRDRELLDRL 65 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHh-----CC-------CeEEEEeCC---CccchhhhhhhccccceEEEECCCCCHHHHHHH
Confidence 5778875 7777777766654 25 346667642 111001111110 11111 22222457777
Q ss_pred hcccCCcEEEeccCCCCCC----------------CHHHHHHHHcCCCCcEEEe
Q 008629 375 VKVIKPTILIGSSGVGRTF----------------TKEVIEAMASFNEKPLILA 412 (559)
Q Consensus 375 V~~vkPtvLIG~S~~~g~F----------------t~evv~~Ma~~~erPIIFa 412 (559)
++..++|++|=+.+..... +..+++.|.+..-+.+||.
T Consensus 66 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ 119 (328)
T TIGR01179 66 FEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFS 119 (328)
T ss_pred HHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEe
Confidence 8767899999665532111 2455677776655678773
No 398
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=44.56 E-value=26 Score=43.01 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=28.3
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
-+..||+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar-----~G~-------~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLAR-----AGH-------PVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHH-----cCC-------eEEEEecc
Confidence 456899999999999999999865 363 57788865
No 399
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=44.46 E-value=22 Score=41.04 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=27.2
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
++..|+|+|||.||+..|-.|... .|+ ++.++|++
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~----~Gi-------~v~IiE~~ 65 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAF----PDI-------TTRIVERK 65 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcC----CCC-------cEEEEEcC
Confidence 356899999999999998887652 265 46778876
No 400
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=44.42 E-value=28 Score=35.61 Aligned_cols=37 Identities=27% Similarity=0.454 Sum_probs=28.5
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCcc
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 346 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi 346 (559)
.+-.++|+|||.||+..|-.+.+ .| .++.+++++.-+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~-----~G-------~~V~vlEk~~~~ 56 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAK-----NG-------LKVCVLERSLAF 56 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-----CC-------CcEEEEecCCCC
Confidence 46789999999999999877754 35 368888887443
No 401
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=44.36 E-value=24 Score=36.58 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=23.8
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 302 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 302 iv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
|+|+|||.||+-.|-.|.+ .|+ ++.++|+.-
T Consensus 2 ViIvGaG~aGl~~A~~L~~-----~G~-------~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALAR-----SGL-------KIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 7999999999999977765 364 466666663
No 402
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=44.33 E-value=34 Score=35.94 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=27.6
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
..++|+|+|+|.||+..|..+.+ .| .++.++|+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 50 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLAC-----LG-------YEVHVYDKL 50 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEeCC
Confidence 45799999999999999888864 25 468888875
No 403
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=44.33 E-value=56 Score=37.02 Aligned_cols=97 Identities=20% Similarity=0.156 Sum_probs=62.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc-C---CCCCHHHHhc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-E---PVNNLLDAVK 376 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~-~---~~~~L~e~V~ 376 (559)
+|-|+|-|..|.++|.-|+.. |. ++.++|+. .++ .+++...++... . ...++.|+++
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~V~NRt----~~k---~~~l~~~~~~~Ga~~~~~a~s~~e~v~ 68 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEK-----GF-------PISVYNRT----TSK---VDETVERAKKEGNLPLYGFKDPEDFVL 68 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhC-----CC-------eEEEECCC----HHH---HHHHHHhhhhcCCcccccCCCHHHHHh
Confidence 699999999999999999763 64 57777763 222 223322222211 1 3468999997
Q ss_pred cc-CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCC
Q 008629 377 VI-KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 417 (559)
Q Consensus 377 ~v-kPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt 417 (559)
.+ +|+++| ++=..+.-.++|+..+... .+.-||.=+||=.
T Consensus 69 ~l~~~dvIi-~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~ 110 (493)
T PLN02350 69 SIQKPRSVI-ILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEW 110 (493)
T ss_pred cCCCCCEEE-EECCCcHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 54 588888 4444455566776554433 4677999999854
No 404
>PRK08013 oxidoreductase; Provisional
Probab=44.32 E-value=26 Score=37.34 Aligned_cols=33 Identities=12% Similarity=0.286 Sum_probs=24.9
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+-.|+|+|||.+|+..|-.|.. .|+ ++.++|++
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~-----~G~-------~v~viE~~ 35 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG-----SGL-------RVAVLEQR 35 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh-----CCC-------EEEEEeCC
Confidence 3479999999999999877654 375 46667654
No 405
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=44.29 E-value=24 Score=37.12 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=25.9
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+..|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~-----~G~-------~V~liE~~ 37 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQ-----HGF-------SVAVLEHA 37 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 4579999999999999877754 364 57888875
No 406
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=44.19 E-value=29 Score=36.87 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=18.9
Q ss_pred cceEEEeCcChHHHHHHHHHHH
Q 008629 299 EHRFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~ 320 (559)
..+|+|+|||.||+..|-.|.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~ 23 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL 23 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 4679999999999999887765
No 407
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=44.14 E-value=40 Score=35.01 Aligned_cols=90 Identities=20% Similarity=0.337 Sum_probs=59.1
Q ss_pred hCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCC-CCH
Q 008629 293 IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNL 371 (559)
Q Consensus 293 ~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~-~~L 371 (559)
-|..++ +++|+||=--|.+||+.|... + +|+++|.+ +|-+.+..+.-.. ..+
T Consensus 38 e~~~~k--~~lI~G~YltG~~iA~~L~~~-----------~--eV~lvDI~------------p~lk~ll~~~i~F~~~~ 90 (252)
T PF06690_consen 38 EGEEFK--QALIFGAYLTGNFIASALSKK-----------C--EVTLVDIH------------PHLKELLNENIKFMEFR 90 (252)
T ss_pred cccccc--eEEEEEEEeehHHHHHHhccC-----------c--eEEEEeCc------------HHHHHHhcCCCceeecc
Confidence 345555 899999999999999888542 2 79999874 1222222110000 011
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 372 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 372 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.+ . .++||++|=++|-||+ +++.++.. .|=+|=.=||.
T Consensus 91 ~~-~-~~~~DlIID~TGlGGv-~~~~Ls~~-----~p~v~IVEdP~ 128 (252)
T PF06690_consen 91 NG-L-EGNPDLIIDTTGLGGV-DPDFLSKF-----NPKVFIVEDPK 128 (252)
T ss_pred CC-C-CCCCCEEEECCCCCCC-CHHHHhcc-----CCCEEEEECCC
Confidence 11 1 2379999999999996 99998765 26677778888
No 408
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=43.90 E-value=28 Score=36.15 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=27.0
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
...|+|+|||-+|+.+|-.|.+. | .++.++|+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-----g-------~~V~lie~~~ 36 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-----G-------LRVLGLDRFM 36 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeccc
Confidence 34699999999999999777652 5 4688898764
No 409
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=43.84 E-value=61 Score=31.70 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=23.8
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 296 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 296 ~l~d~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
++++++++|.|| |..|..+|+.+++ .|. ++.++|++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~-----~G~-------~V~~~~r~ 43 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQ-----AGA-------EVILNGRD 43 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHH-----cCC-------EEEEEeCC
Confidence 577899999997 5555555555543 363 47777764
No 410
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=43.68 E-value=46 Score=34.34 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=26.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 342 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~ 342 (559)
.||.|+|+|.-|-.++.-|++ .|.- ...+|+++|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~-----~g~~---~~~~I~v~~r 37 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMIN-----KNIV---SPDQIICSDL 37 (272)
T ss_pred CeEEEECccHHHHHHHHHHHH-----CCCC---CCceEEEECC
Confidence 379999999999999988864 2531 2346888876
No 411
>PRK10262 thioredoxin reductase; Provisional
Probab=43.65 E-value=21 Score=36.74 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=20.6
Q ss_pred cccceEEEeCcChHHHHHHHHHHH
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~ 320 (559)
-+..+|||+|+|.||+..|..+..
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~ 27 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAAR 27 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH
Confidence 356789999999999999988765
No 412
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=43.65 E-value=28 Score=36.23 Aligned_cols=33 Identities=27% Similarity=0.269 Sum_probs=26.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 345 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 345 (559)
.|+|+|||.+|+.+|-.|.+ .|. ++.++|+...
T Consensus 2 dvvIIGaGi~G~s~A~~La~-----~g~-------~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAK-----HGK-------KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccCC
Confidence 58999999999999988764 253 5888888654
No 413
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=43.54 E-value=76 Score=33.75 Aligned_cols=97 Identities=19% Similarity=0.141 Sum_probs=57.3
Q ss_pred ccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch--hchhhcc-ccCCCCCHHH
Q 008629 298 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH--FKKPWAH-EHEPVNNLLD 373 (559)
Q Consensus 298 ~d~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~--~k~~fA~-~~~~~~~L~e 373 (559)
+++||+|.|+ |-.|..+++.|.+ .|. +++.+|+..- ..+.. ....+-. +..+..++..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~-----~G~-------~V~~v~r~~~------~~~~~~~~~~~~~~~Dl~d~~~~~~ 81 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKA-----EGH-------YIIASDWKKN------EHMSEDMFCHEFHLVDLRVMENCLK 81 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHh-----CCC-------EEEEEEeccc------cccccccccceEEECCCCCHHHHHH
Confidence 4579999998 9988888888865 253 6888886421 00111 0111111 1111223555
Q ss_pred HhcccCCcEEEeccCCCC--C---------------CCHHHHHHHHcCCCCcEEEecC
Q 008629 374 AVKVIKPTILIGSSGVGR--T---------------FTKEVIEAMASFNEKPLILALS 414 (559)
Q Consensus 374 ~V~~vkPtvLIG~S~~~g--~---------------Ft~evv~~Ma~~~erPIIFaLS 414 (559)
+++ ++|++|=+.+..+ . .|..+++++.+..-+.+||.=|
T Consensus 82 ~~~--~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 82 VTK--GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred HHh--CCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 555 5899998875431 1 2355777777766678998644
No 414
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=43.53 E-value=27 Score=38.08 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=25.0
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 302 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 302 iv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+||+|||+||+..|..+.+ .| .++.++|++
T Consensus 3 vvVIGaGpaG~~aA~~aa~-----~g-------~~v~lie~~ 32 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAE-----LG-------ASVAMVERG 32 (463)
T ss_pred EEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 7999999999999888765 36 478899975
No 415
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=43.51 E-value=27 Score=37.29 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=25.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
.|+|+|||-||+..|..|.++ |. .+.++|+-+
T Consensus 3 siaIVGaGiAGl~aA~~L~~a-----G~-------~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA-----GR-------EVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc-----Cc-------EEEEEEcCC
Confidence 489999999999999998764 65 477787643
No 416
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=43.49 E-value=1.4e+02 Score=33.50 Aligned_cols=36 Identities=22% Similarity=0.437 Sum_probs=29.3
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+..+||+++|-|-.|+++|+.|.+. |. ++++.|.+
T Consensus 4 ~~~~~kv~V~GLG~sG~a~a~~L~~~-----G~-------~v~v~D~~ 39 (448)
T COG0771 4 DFQGKKVLVLGLGKSGLAAARFLLKL-----GA-------EVTVSDDR 39 (448)
T ss_pred cccCCEEEEEecccccHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 34589999999999999999999763 63 68888865
No 417
>PRK07538 hypothetical protein; Provisional
Probab=43.48 E-value=27 Score=37.29 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=16.3
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 008629 301 RFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~ 320 (559)
+|+|+|||.||+..|-.|.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~ 21 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ 21 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 68899999999888877654
No 418
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=43.43 E-value=45 Score=37.19 Aligned_cols=85 Identities=11% Similarity=0.061 Sum_probs=45.0
Q ss_pred HHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc----
Q 008629 288 AALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---- 363 (559)
Q Consensus 288 ~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~---- 363 (559)
..+......|+..|++++|.|.=...++.++. +.|+.. ..+-. .....++.....+....
T Consensus 324 ~~ld~~~~~L~GKrv~i~~g~~~~~~~~~~l~-----ELGmev-------v~~g~----~~~~~~~~~~~~~~~~~~~~i 387 (466)
T TIGR01282 324 AVIAKYRPRLEGKTVMLYVGGLRPRHVIGAFE-----DLGMEV-------IGTGY----EFAHNDDYERTTKYMKDGTLI 387 (466)
T ss_pred HHHHHHHHhcCCCEEEEECCCCcHHHHHHHHH-----HCCCEE-------EEEee----ecCCHHHHHHHHHhcCCCeEE
Confidence 33444557888999999987766666666432 358732 11100 00000111111111100
Q ss_pred -ccCCCCCHHHHhcccCCcEEEeccC
Q 008629 364 -EHEPVNNLLDAVKVIKPTILIGSSG 388 (559)
Q Consensus 364 -~~~~~~~L~e~V~~vkPtvLIG~S~ 388 (559)
+..+...|++.++..|||+|||-|.
T Consensus 388 ~~~~d~~el~~~i~~~~pDl~ig~~~ 413 (466)
T TIGR01282 388 YDDVTHYEFEEFVEKLKPDLVGSGIK 413 (466)
T ss_pred eeCCCHHHHHHHHHHhCCCEEEecCC
Confidence 1112236888889999999998664
No 419
>PRK12831 putative oxidoreductase; Provisional
Probab=43.42 E-value=30 Score=38.31 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=27.4
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
...+|+|+|+|.||+..|..+... |. ++.++|+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~-----G~-------~V~v~e~~ 172 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM-----GY-------DVTIFEAL 172 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEecC
Confidence 457899999999999999888763 63 57888864
No 420
>PRK06185 hypothetical protein; Provisional
Probab=43.39 E-value=27 Score=36.87 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=25.9
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
+..|+|+|||.+|+..|-.|.+ .|+ ++.++|++.
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~-----~G~-------~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLAR-----AGV-------DVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecCC
Confidence 4579999999999999877654 375 467777753
No 421
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=43.39 E-value=53 Score=31.85 Aligned_cols=140 Identities=17% Similarity=0.207 Sum_probs=80.3
Q ss_pred hhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecC--ceecccCCCCCc--cccchhHHHHHHhHhc--------CC
Q 008629 153 IFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDG--ERILGLGDLGCQ--GMGIPVGKLALYTALG--------GI 220 (559)
Q Consensus 153 i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG--~rILGLGDlG~~--GmgI~iGKl~LY~a~g--------GI 220 (559)
+-+++.|+-++..|.....+.++.+...++.|+.+-.. ..-..+--.|.+ .+|-..|+..+-.... |.
T Consensus 52 i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~~~v~~~~~~ 131 (257)
T PF13407_consen 52 ISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAKGKVLILSGS 131 (257)
T ss_dssp HHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred HHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEeccccccccceeeeeccHHHHHHHHHHHHHHHhccCceEEeccCC
Confidence 46779999999999988888888888888888887555 222222233333 4566666666655543 22
Q ss_pred CCCcchhHhHHHHHHHHHHhhCCCeeee---eccCCCCcHHHHHHHHcCCCCeeecCCcchhHHHHHHHHHHHHHhCC
Q 008629 221 RPSAEYAELLDEFMSAVKQNYGEKVLIQ---FEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGG 295 (559)
Q Consensus 221 ~P~~~y~~~vdefv~av~~~fGp~~lIq---~EDf~~~~Af~lL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~ 295 (559)
.......+.++-|.+++++ ++.-.++. ..++....+.+..+++-...+ -|=|=.+....+-|++.|++-.|+
T Consensus 132 ~~~~~~~~r~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~--~~~i~~~~~~~~~g~~~al~~~g~ 206 (257)
T PF13407_consen 132 PGNPNTQERLEGFRDALKE-YPGVEIVDEYEYTDWDPEDARQAIENLLQANP--VDAIIACNDGMALGAAQALQQAGR 206 (257)
T ss_dssp TTSHHHHHHHHHHHHHHHH-CTTEEEEEEEEECTTSHHHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTTC
T ss_pred CCchHHHHHHHHHHHHHhh-cceeeeeeeeeccCCCHHHHHHHHHHhhhcCC--ceEEEeCCChHHHHHHHHHHHcCC
Confidence 1222344567777777777 63212222 235666677765555532221 111111223344477788888777
No 422
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=43.36 E-value=2e+02 Score=28.69 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=27.8
Q ss_pred CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 008629 370 NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 411 (559)
Q Consensus 370 ~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 411 (559)
++.+..+. .|++|..|... .|.-.++++|+ +..|+|.
T Consensus 255 ~~~~~~~~--ad~~v~~s~~e-~~~~~~~Ea~a--~G~PvI~ 291 (360)
T cd04951 255 DIAAYYNA--ADLFVLSSAWE-GFGLVVAEAMA--CELPVVA 291 (360)
T ss_pred cHHHHHHh--hceEEeccccc-CCChHHHHHHH--cCCCEEE
Confidence 35566664 78899888764 48889999999 4678885
No 423
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=43.34 E-value=22 Score=37.66 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=24.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 4 dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~ 34 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQG-----SGL-------EVLLLDGG 34 (405)
T ss_pred cEEEECccHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 68999999999999988754 365 56777765
No 424
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=43.30 E-value=29 Score=40.19 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=26.9
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
...||+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~-----~G~-------~Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLR-----KGH-------DVTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 45799999999999999988865 253 57777764
No 425
>PRK06182 short chain dehydrogenase; Validated
Probab=43.30 E-value=38 Score=33.64 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=38.0
Q ss_pred ccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchh---chhh-ccccCCCCCHH
Q 008629 298 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF---KKPW-AHEHEPVNNLL 372 (559)
Q Consensus 298 ~d~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~---k~~f-A~~~~~~~~L~ 372 (559)
+..+++|.|| |..|..+|+.+. + .|. ++++++++- +.+.+. ...+ .-|..+..++.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~----~-~G~-------~V~~~~r~~-------~~l~~~~~~~~~~~~~Dv~~~~~~~ 62 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLA----A-QGY-------TVYGAARRV-------DKMEDLASLGVHPLSLDVTDEASIK 62 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHH----H-CCC-------EEEEEeCCH-------HHHHHHHhCCCeEEEeeCCCHHHHH
Confidence 3568999997 334444444443 3 353 577766541 112111 1111 11222223455
Q ss_pred HHhccc-----CCcEEEeccCCC
Q 008629 373 DAVKVI-----KPTILIGSSGVG 390 (559)
Q Consensus 373 e~V~~v-----kPtvLIG~S~~~ 390 (559)
++++.+ ++|+||=..+..
T Consensus 63 ~~~~~~~~~~~~id~li~~ag~~ 85 (273)
T PRK06182 63 AAVDTIIAEEGRIDVLVNNAGYG 85 (273)
T ss_pred HHHHHHHHhcCCCCEEEECCCcC
Confidence 666544 799999877654
No 426
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=43.22 E-value=33 Score=40.29 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=28.7
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
-...+|+|+|||.||+..|..|... |. ++.++|+.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~-----G~-------~V~v~e~~ 463 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKR-----GY-------DVTVFEAL 463 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 4578999999999999999988753 63 68888874
No 427
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=43.14 E-value=70 Score=36.07 Aligned_cols=75 Identities=16% Similarity=0.351 Sum_probs=43.8
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCc--CCCchhchhhccc---cCCCCCH
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--DSLQHFKKPWAHE---HEPVNNL 371 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~--~~l~~~k~~fA~~---~~~~~~L 371 (559)
|...|++|+|-..-.+|+++.|... .|+.. ++ ..+..+. +.+....+.+..+ .++...+
T Consensus 293 l~Gkrv~I~gd~~~a~~l~~~L~~E----lG~~v------v~------~gt~~~~~~~~~~~~~~~~~~~~~i~dD~~ei 356 (511)
T TIGR01278 293 LTGKRAFVFGDATHAVGMTKILARE----LGIHI------VG------AGTYCKYDADWVREQVAGYVDEVLITDDFQEV 356 (511)
T ss_pred hcCCeEEEEcCcHHHHHHHHHHHHh----CCCEE------Ee------cCCchhhhHHHHHHHHHhcCCCeEEeCCHHHH
Confidence 6778999999999999999999754 48732 11 1111110 0011111111111 1112357
Q ss_pred HHHhcccCCcEEEecc
Q 008629 372 LDAVKVIKPTILIGSS 387 (559)
Q Consensus 372 ~e~V~~vkPtvLIG~S 387 (559)
++.|+..+||++||.|
T Consensus 357 ~~~i~~~~pdliiG~~ 372 (511)
T TIGR01278 357 ADAIAALEPELVLGTQ 372 (511)
T ss_pred HHHHHhcCCCEEEECh
Confidence 7888999999999966
No 428
>PRK08219 short chain dehydrogenase; Provisional
Probab=43.12 E-value=88 Score=29.61 Aligned_cols=71 Identities=21% Similarity=0.266 Sum_probs=37.7
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchh-----hcc-ccCCCCCHH
Q 008629 300 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP-----WAH-EHEPVNNLL 372 (559)
Q Consensus 300 ~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~-----fA~-~~~~~~~L~ 372 (559)
.+++|.|+ |..|..+++.|++ . .+++++|++. +.++..... +-+ +..+..++.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~------------~-~~V~~~~r~~-------~~~~~~~~~~~~~~~~~~D~~~~~~~~ 63 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAP------------T-HTLLLGGRPA-------ERLDELAAELPGATPFPVDLTDPEAIA 63 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHh------------h-CCEEEEeCCH-------HHHHHHHHHhccceEEecCCCCHHHHH
Confidence 47888887 4455555555432 1 3577777641 111111111 111 112223566
Q ss_pred HHhccc-CCcEEEeccCCC
Q 008629 373 DAVKVI-KPTILIGSSGVG 390 (559)
Q Consensus 373 e~V~~v-kPtvLIG~S~~~ 390 (559)
++++.+ ++|++|-+.+..
T Consensus 64 ~~~~~~~~id~vi~~ag~~ 82 (227)
T PRK08219 64 AAVEQLGRLDVLVHNAGVA 82 (227)
T ss_pred HHHHhcCCCCEEEECCCcC
Confidence 666654 689999888764
No 429
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=43.06 E-value=26 Score=38.91 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=27.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
..|||+|+|.+|.++|..+.. .|+ ++.|++++
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rG~-------~V~LlEk~ 38 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAG-----RGL-------KVLLCEKD 38 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEECC
Confidence 579999999999999999875 375 58888876
No 430
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=42.78 E-value=29 Score=39.24 Aligned_cols=33 Identities=33% Similarity=0.556 Sum_probs=27.0
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+-.|+|+|+|..|+++|..|... |+ ++.|+|+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~r-----G~-------~V~LlEk~ 38 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALR-----GL-------RCILVERH 38 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHc-----CC-------eEEEEECC
Confidence 35699999999999999988753 65 57888875
No 431
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=42.73 E-value=73 Score=30.96 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=22.9
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 296 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 296 ~l~d~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.++..+++|.|| |..|..+++.|++ .|. +++++++.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~-----~G~-------~v~~~~r~ 40 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELAR-----AGA-------AVAIADLN 40 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 355678999998 5555555555543 363 57777764
No 432
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=42.54 E-value=63 Score=36.69 Aligned_cols=123 Identities=18% Similarity=0.156 Sum_probs=68.2
Q ss_pred cCcchHHHHHhcCCCCCeeEEEEecCceecccC------------------CCCCccccchhH-----HHHHHhH-hcCC
Q 008629 165 KEKGKILEVLKNWPERSIQVIVVTDGERILGLG------------------DLGCQGMGIPVG-----KLALYTA-LGGI 220 (559)
Q Consensus 165 ~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLG------------------DlG~~GmgI~iG-----Kl~LY~a-~gGI 220 (559)
.|-..|.++|... ++++.++.|=|..|.-. +.+--..-|.++ |++-|-. --|+
T Consensus 234 gd~~eikrlL~~~---Gi~~~~l~d~s~~~d~p~~g~~~~~~ggttleei~~a~~A~~~ivl~~~~~~~~a~~l~~~~g~ 310 (515)
T TIGR01286 234 GNFREIKRILSLM---GVGYTLLSDPEEVLDTPADGEFRMYAGGTTLEEMKDAPNAEATVLLQPYTLRKTKEYIEKTWKQ 310 (515)
T ss_pred hhHHHHHHHHHHc---CCCeEEccCccccccCCCCCCccccCCCCCHHHHHHhhhCcEEEEEchhhhHHHHHHHHHHhCC
Confidence 3445566666643 68899988866555322 111111223333 3343322 2355
Q ss_pred CCC----cchhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHHHHHHHHcCCCCeeecCCcchhHHHHHHHHHHHHHhCCC
Q 008629 221 RPS----AEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGT 296 (559)
Q Consensus 221 ~P~----~~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af~lL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~ 296 (559)
.+. +.=-+-.|+|+.++.+.+|-. + |. .+++-|.+ ++.++.-...-
T Consensus 311 p~~~~~~PiGi~~Td~fL~~la~~~g~~-------i--p~---~i~~eR~r------------------l~dam~d~~~~ 360 (515)
T TIGR01286 311 ETPKLNIPLGVKGTDEFLMKVSEISGQP-------I--PA---ELTKERGR------------------LVDAMTDSHAW 360 (515)
T ss_pred CcccCCCCccHHHHHHHHHHHHHHHCCC-------C--CH---HHHHHHHH------------------HHHHHHHHHHH
Confidence 432 223445678888888888631 1 11 12221111 23333333345
Q ss_pred cccceEEEeCcChHHHHHHHHHHH
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~ 320 (559)
|...|+.++|-..-.+|+++.|.+
T Consensus 361 l~GKrvaI~gdpd~~~~l~~fL~E 384 (515)
T TIGR01286 361 LHGKRFAIYGDPDFVMGLVRFVLE 384 (515)
T ss_pred hcCceEEEECCHHHHHHHHHHHHH
Confidence 678999999999999999999975
No 433
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=42.45 E-value=57 Score=37.98 Aligned_cols=93 Identities=14% Similarity=0.218 Sum_probs=51.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 379 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 379 (559)
.||.|+|+|..|..+|..+... |. ..+++.+|++ .++ +...++ +........++.++++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-----G~-----~~~V~~~d~~----~~~---~~~a~~-~g~~~~~~~~~~~~~~~-- 63 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-----GL-----AREVVAVDRR----AKS---LELAVS-LGVIDRGEEDLAEAVSG-- 63 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CCEEEEEECC----hhH---HHHHHH-CCCCCcccCCHHHHhcC--
Confidence 6899999999999999988653 53 1358888874 111 111110 10000112356666653
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecC
Q 008629 380 PTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALS 414 (559)
Q Consensus 380 PtvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLS 414 (559)
+|++| ++..+ ...+++++.|+.+. +.-||.-++
T Consensus 64 aDvVi-lavp~-~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 64 ADVIV-LAVPV-LAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred CCEEE-ECCCH-HHHHHHHHHHHHhcCCCcEEEEcC
Confidence 66666 44433 35677777776542 333444343
No 434
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=42.39 E-value=30 Score=37.86 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=26.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
|++|+|+|+||+..|..+.+ .| +++.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~-----~g-------~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ-----NG-------KNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CC-------CcEEEEECC
Confidence 79999999999999988865 36 469999975
No 435
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=42.39 E-value=25 Score=38.86 Aligned_cols=35 Identities=31% Similarity=0.521 Sum_probs=27.5
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+||||+|+|-+|+-.+..+.... . .-+|.+||++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~-~---------~~~itLVd~~ 37 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL-P---------DVEITLVDRR 37 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC-C---------CCcEEEEeCC
Confidence 579999999999999998887642 1 1358888875
No 436
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=42.19 E-value=1.4e+02 Score=28.00 Aligned_cols=45 Identities=24% Similarity=0.329 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcc
Q 008629 280 SVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 335 (559)
Q Consensus 280 aV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~ 335 (559)
.+.-+|++.++.-.|.++. +|.|..+ |-=+|-++. .|.+.+|..+
T Consensus 12 G~~~~Gvl~~L~~~~~~~d----~i~GtSa-Gal~a~~~a------~g~~~~~~~~ 56 (175)
T cd07205 12 GLAHIGVLKALEEAGIPID----IVSGTSA-GAIVGALYA------AGYSPEEIEE 56 (175)
T ss_pred HHHHHHHHHHHHHcCCCee----EEEEECH-HHHHHHHHH------cCCCHHHHHH
Confidence 4557889999988776542 5667643 333333322 2666666543
No 437
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=42.00 E-value=30 Score=37.56 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=25.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 342 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~ 342 (559)
.+||+|+|.||+..|..+... | .++.++|+
T Consensus 3 DvvVIG~G~aGl~aA~~la~~-----G-------~~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQL-----G-------LKVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEec
Confidence 589999999999999888652 6 46889998
No 438
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=41.88 E-value=28 Score=37.66 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=26.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
-.+||+|+|+||+..|..+.+. | .++.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~-----g-------~~V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKA-----G-------WRVALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 4689999999999999888753 5 468899975
No 439
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=41.84 E-value=23 Score=35.47 Aligned_cols=48 Identities=29% Similarity=0.509 Sum_probs=26.4
Q ss_pred ccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHh---cC-CCCCeeEEEEecCc
Q 008629 138 VYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLK---NW-PERSIQVIVVTDGE 191 (559)
Q Consensus 138 vYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~---nw-p~~~v~viVVTDG~ 191 (559)
||--|-=+.|.+ |+|.|||-- .-.|.|....- -| +..+.++.+=||..
T Consensus 125 VyV~~pl~vce~-----RDpKGLYkK-Ar~GeI~~fTGid~pYE~P~~Pel~l~t~~~ 176 (197)
T COG0529 125 VYVDTPLEVCER-----RDPKGLYKK-ARAGEIKNFTGIDSPYEAPENPELHLDTDRN 176 (197)
T ss_pred EEeCCCHHHHHh-----cCchHHHHH-HHcCCCCCCcCCCCCCCCCCCCeeEeccccC
Confidence 455555688988 999999961 12244432221 12 12355666666543
No 440
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=41.66 E-value=16 Score=39.56 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=19.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHH
Q 008629 300 HRFLFLGAGEAGTGIAELIALE 321 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~ 321 (559)
++|+|+|||-||+..|..|.+.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~ 23 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKL 23 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhh
Confidence 3799999999999999999764
No 441
>PRK06834 hypothetical protein; Provisional
Probab=41.62 E-value=33 Score=38.17 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=27.5
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
.+..|+|+|||.+|+-.|-.|.. .|+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~-----~G~-------~v~vlEr~~ 36 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELAL-----AGV-------DVAIVERRP 36 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecCC
Confidence 45789999999999999988865 375 467777653
No 442
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=41.51 E-value=1.4e+02 Score=31.06 Aligned_cols=83 Identities=19% Similarity=0.282 Sum_probs=49.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 379 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 379 (559)
+||.|+|.|+.+. +|+.+...|.+ .| ++.++++...... . . + .. +. +
T Consensus 48 ~~I~i~G~G~S~~-~a~~~~~~l~~-~g-------~~~~~~~~~~~~~---------~--~-~------~~----~~--~ 94 (326)
T PRK10892 48 GKVVVMGMGKSGH-IGRKMAATFAS-TG-------TPSFFVHPGEAAH---------G--D-L------GM----VT--P 94 (326)
T ss_pred CeEEEEeCcHhHH-HHHHHHHHHhc-CC-------ceeEEeChHHhhc---------c--c-c------cc----CC--C
Confidence 6999999997775 67666666654 34 3344332211000 0 0 0 00 11 4
Q ss_pred CcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEecCCCC
Q 008629 380 PTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPT 417 (559)
Q Consensus 380 PtvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNPt 417 (559)
-|++|++|..|. |+++++.+. +.+.-|+|-=-+||.
T Consensus 95 ~d~~I~iS~sG~--t~~~~~~~~~ak~~g~~vi~iT~~~~ 132 (326)
T PRK10892 95 QDVVIAISNSGE--SSEILALIPVLKRLHVPLICITGRPE 132 (326)
T ss_pred CCEEEEEeCCCC--CHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 689999999775 889988864 444557766555555
No 443
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=41.48 E-value=30 Score=39.17 Aligned_cols=32 Identities=16% Similarity=0.350 Sum_probs=25.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
.|+|+|||.||+..|..+.. .| .++.++|+..
T Consensus 6 DVvIIGgGpAGL~AA~~lar-----~g-------~~V~liE~~~ 37 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGR-----AK-------LDTLIIEKDD 37 (555)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CCEEEEecCC
Confidence 69999999999999987765 25 3688888653
No 444
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=41.43 E-value=33 Score=38.02 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.9
Q ss_pred cccceEEEeCcChHHHHHHHHHHH
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~ 320 (559)
++++||+|+|.|..|.++|++|..
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~ 29 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRA 29 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHH
Confidence 567899999999999999999876
No 445
>PRK14694 putative mercuric reductase; Provisional
Probab=41.42 E-value=34 Score=37.55 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=27.4
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+-.++|+|||+||+..|..+.+. | .++.++|+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~-----g-------~~v~lie~~ 38 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATER-----G-------ARVTLIERG 38 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEEcc
Confidence 345799999999999999888763 5 468899875
No 446
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=41.39 E-value=74 Score=38.24 Aligned_cols=107 Identities=14% Similarity=0.137 Sum_probs=65.0
Q ss_pred ccceEEEeCcChHHHHHHHHHHHH---HHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc--cCCCCCHH
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALE---ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEPVNNLL 372 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~---~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~--~~~~~~L~ 372 (559)
+..+|.++|-|..|.|++++|.+- +.++.|+.. +=.-++|+++.+.+.++-++..+...|... ..+...+.
T Consensus 457 ~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~----~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~ 532 (810)
T PRK09466 457 KRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEF----VLVGVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLF 532 (810)
T ss_pred ceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCE----EEEEEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHH
Confidence 346899999999999999999874 222234421 123467898887776532223333333321 12234566
Q ss_pred HHhcccCCc--EEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 008629 373 DAVKVIKPT--ILIGSSGVGRTFTKEVIEAMASFNEKPLIL 411 (559)
Q Consensus 373 e~V~~vkPt--vLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 411 (559)
|.+....++ |+|=+++.. -....+.+++. +...+|-
T Consensus 533 e~i~~~~~~~~vvVd~t~~~-~~~~~~~~aL~--~G~~VVt 570 (810)
T PRK09466 533 LWLRAHPYDELVVLDVTASE-QLALQYPDFAS--HGFHVIS 570 (810)
T ss_pred HHHhhcCCCCcEEEECCCCh-HHHHHHHHHHH--cCCEEEc
Confidence 777765664 899888732 34455667776 3566665
No 447
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=41.30 E-value=30 Score=42.52 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=27.3
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
...+|+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr-----~G~-------~VTV~Ek~ 569 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR-----AGH-------PVTVFEKK 569 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecc
Confidence 35799999999999999988865 363 57788865
No 448
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=41.29 E-value=22 Score=43.49 Aligned_cols=39 Identities=28% Similarity=0.414 Sum_probs=34.2
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
++|++.+|+|+|+|.-|.-||+.|+.+ |+ ++|.++|.+-
T Consensus 20 ~kL~~s~VLIiG~gGLG~EiaKnL~la-----GV------g~iti~D~d~ 58 (1008)
T TIGR01408 20 QKMAKSNVLISGMGGLGLEIAKNLVLA-----GV------KSVTLHDTEK 58 (1008)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCe
Confidence 568889999999999999999999875 87 7899999873
No 449
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=41.19 E-value=39 Score=35.47 Aligned_cols=117 Identities=15% Similarity=0.218 Sum_probs=63.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 379 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 379 (559)
+||.++|.|..|-.|++.|... +. +..+-.++.|+.. ++ .+.++...+.+.+|.+.+. -+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~-----~~---~~~~l~~V~~~~~----~~-------~~~~~~~~~~~~~l~~ll~-~~ 62 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLAD-----AA---QPCQLAALTRNAA----DL-------PPALAGRVALLDGLPGLLA-WR 62 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcC-----CC---CceEEEEEecCCH----HH-------HHHhhccCcccCCHHHHhh-cC
Confidence 6999999999999999887542 11 0113344555531 11 1223322334578888653 37
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE---ecCCCCCCCCCCHHHHhcccCCcEEEeeC
Q 008629 380 PTILIGSSGVGRTFTKEVIEAMASFNEKPLIL---ALSNPTSQSECTAEEAYTWSKGRAIFASG 440 (559)
Q Consensus 380 PtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF---aLSNPt~~~EctpedA~~wt~G~aifAsG 440 (559)
||+++=+.++. ++.+-..+.+.+.. .=+|+ ||+++. =+-.-.++-+-..++..+.||
T Consensus 63 ~DlVVE~A~~~-av~e~~~~iL~~g~-dlvv~SvGALaD~~--~~~~l~~~A~~~g~~i~ipSG 122 (267)
T PRK13301 63 PDLVVEAAGQQ-AIAEHAEGCLTAGL-DMIICSAGALADDA--LRARLIAAAEAGGARIRVPAG 122 (267)
T ss_pred CCEEEECCCHH-HHHHHHHHHHhcCC-CEEEEChhHhcCHH--HHHHHHHHHHhCCCEEEEeCh
Confidence 99999988864 44444444443222 22222 244443 122222333445668888877
No 450
>PRK05868 hypothetical protein; Validated
Probab=41.19 E-value=33 Score=36.44 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=17.2
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 008629 300 HRFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~ 320 (559)
.+|+|+|||.||+..|-.|..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~ 22 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR 22 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 378999999999988877654
No 451
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=41.18 E-value=32 Score=36.66 Aligned_cols=33 Identities=15% Similarity=0.398 Sum_probs=25.3
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.-.|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~-----~G~-------~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE-----SDL-------RIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------EEEEEcCC
Confidence 3479999999999999977654 375 46777764
No 452
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=41.00 E-value=34 Score=38.01 Aligned_cols=34 Identities=15% Similarity=0.353 Sum_probs=27.3
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
...+++|+|+|.||+..|..|.. .|. +++++|+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~-----~g~-------~V~v~e~~ 175 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR-----AGH-------TVTVFERE 175 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 34799999999999999988864 353 58888865
No 453
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=41.00 E-value=64 Score=33.08 Aligned_cols=94 Identities=19% Similarity=0.254 Sum_probs=49.2
Q ss_pred cceEEEeCcChHHHHHHHH-HHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcc
Q 008629 299 EHRFLFLGAGEAGTGIAEL-IALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 377 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~l-l~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~ 377 (559)
..||.|+|+| +++.. .+.++....+. ..-+.++|++ . +......+.|--. .-..++++.++.
T Consensus 3 ~irvgiiG~G----~~~~~~~~~~~~~~~~~-----~~~vav~d~~----~---~~a~~~a~~~~~~-~~~~~~~~ll~~ 65 (342)
T COG0673 3 MIRVGIIGAG----GIAGKAHLPALAALGGG-----LELVAVVDRD----P---ERAEAFAEEFGIA-KAYTDLEELLAD 65 (342)
T ss_pred eeEEEEEccc----HHHHHHhHHHHHhCCCc-----eEEEEEecCC----H---HHHHHHHHHcCCC-cccCCHHHHhcC
Confidence 4689999998 34432 33333321110 1234444543 1 1122233333211 235789999998
Q ss_pred cCCcEEEeccCCCCCCCHHHHHH-HHc----CCCCcEEE
Q 008629 378 IKPTILIGSSGVGRTFTKEVIEA-MAS----FNEKPLIL 411 (559)
Q Consensus 378 vkPtvLIG~S~~~g~Ft~evv~~-Ma~----~~erPIIF 411 (559)
-++|+++ ..++. .+-.+++.+ +.+ .||+|+-.
T Consensus 66 ~~iD~V~-Iatp~-~~H~e~~~~AL~aGkhVl~EKPla~ 102 (342)
T COG0673 66 PDIDAVY-IATPN-ALHAELALAALEAGKHVLCEKPLAL 102 (342)
T ss_pred CCCCEEE-EcCCC-hhhHHHHHHHHhcCCEEEEcCCCCC
Confidence 7778877 44433 466666543 432 56888654
No 454
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=40.95 E-value=1e+02 Score=31.52 Aligned_cols=86 Identities=12% Similarity=0.249 Sum_probs=50.8
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 008629 301 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 379 (559)
Q Consensus 301 riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 379 (559)
||+|.|| |--|--+++.|.+ .| +++.+|+..-. +.-+..+...+.++++..+
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~-----~g--------~V~~~~~~~~~--------------~~~Dl~d~~~~~~~~~~~~ 54 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAP-----LG--------NLIALDVHSTD--------------YCGDFSNPEGVAETVRKIR 54 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhc-----cC--------CEEEecccccc--------------ccCCCCCHHHHHHHHHhcC
Confidence 7899997 8988888776653 13 35666653110 0011112235777888888
Q ss_pred CcEEEeccCCCCCC----------------CHHHHHHHHcCCCCcEEEecC
Q 008629 380 PTILIGSSGVGRTF----------------TKEVIEAMASFNEKPLILALS 414 (559)
Q Consensus 380 PtvLIG~S~~~g~F----------------t~evv~~Ma~~~erPIIFaLS 414 (559)
||++|=+.+..+.- |..+++.+.+.. .++||.=|
T Consensus 55 ~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g-~~~v~~Ss 104 (299)
T PRK09987 55 PDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVG-AWVVHYST 104 (299)
T ss_pred CCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC-CeEEEEcc
Confidence 99999776654221 233555555544 46887544
No 455
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=40.93 E-value=33 Score=37.63 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=26.9
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.-.+||+|+|+||+..|..+.+. | +++.++|+.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~-----G-------~~v~lie~~ 36 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQL-----G-------LKTALVEKG 36 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEEcc
Confidence 34699999999999999887653 6 479999975
No 456
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=40.93 E-value=96 Score=31.68 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=25.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.||.|+|.|..|..+|..+.. .|. +++++|++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~-----~g~-------~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLK-----AGY-------SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHH-----CCC-------eEEEEcCC
Confidence 479999999999999999875 253 46777764
No 457
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=40.93 E-value=2e+02 Score=31.07 Aligned_cols=138 Identities=13% Similarity=0.190 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhhCCCeeeeeccCCCCcHHHHHHHHcCCCCeeec-CCcchhHHHHHHHHHHHHHhC-CCcccceEEEeCc
Q 008629 230 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFND-DIQGTASVVLAGVVAALKLIG-GTLAEHRFLFLGA 307 (559)
Q Consensus 230 vdefv~av~~~fGp~~lIq~EDf~~~~Af~lL~ryr~~~~~FnD-DiQGTaaV~LAgll~Alr~~g-~~l~d~riv~~GA 307 (559)
+.+.+..+ .+| .++++ +-... +-+.+.+.+| .++||+|= |-..=-.=+||=++.-.+..| +++++.+|.++|-
T Consensus 90 l~Dtarvl-s~y-~D~Iv-~R~~~-~~~~~~~a~~-~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD 164 (336)
T PRK03515 90 IKDTARVL-GRM-YDGIQ-YRGYG-QEIVETLAEY-AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGD 164 (336)
T ss_pred HHHHHHHH-HHh-CcEEE-EEeCC-hHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCC
Confidence 44444333 446 45443 32332 2233344444 47899993 222233456777777777766 4799999999998
Q ss_pred ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccC----CCCCHHHHhcccCCcEE
Q 008629 308 GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE----PVNNLLDAVKVIKPTIL 383 (559)
Q Consensus 308 GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~----~~~~L~e~V~~vkPtvL 383 (559)
+.- ++++-++.++.+ .|+ ++.++-.+|+.-.. .+-+.-+.+++... -..++.|+++. .||+
T Consensus 165 ~~~--~v~~Sl~~~~~~-~g~-------~v~~~~P~~~~~~~---~~~~~~~~~~~~~g~~i~~~~d~~ea~~~--aDvv 229 (336)
T PRK03515 165 ARN--NMGNSLLEAAAL-TGL-------DLRLVAPKACWPEA---ALVTECRALAQKNGGNITLTEDIAEGVKG--ADFI 229 (336)
T ss_pred CcC--cHHHHHHHHHHH-cCC-------EEEEECCchhcCcH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEE
Confidence 633 477777776665 475 68888887773321 12111123333211 13689999996 9999
Q ss_pred Eecc
Q 008629 384 IGSS 387 (559)
Q Consensus 384 IG~S 387 (559)
.-.+
T Consensus 230 ytd~ 233 (336)
T PRK03515 230 YTDV 233 (336)
T ss_pred EecC
Confidence 9865
No 458
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=40.78 E-value=26 Score=36.86 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=17.7
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 008629 301 RFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~ 320 (559)
+|+|+|||.||+..|-.|..
T Consensus 3 dv~IvGaG~aGl~~A~~L~~ 22 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQ 22 (403)
T ss_pred CEEEECccHHHHHHHHHHhc
Confidence 58999999999999988765
No 459
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=40.72 E-value=1.8e+02 Score=32.51 Aligned_cols=30 Identities=7% Similarity=-0.014 Sum_probs=24.1
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCC
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 328 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~ 328 (559)
..|...|++|+|.+.-..+++..+... .|+
T Consensus 323 ~~L~GkrvaI~~~~~~~~~~~~~l~~E----lGm 352 (461)
T TIGR01860 323 ERLQGKKMCIWTGGPRLWHWTKALEDD----LGM 352 (461)
T ss_pred HHcCCCEEEEECCCchHHHHHHHHHHh----CCC
Confidence 567888999999888888888877753 487
No 460
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=40.71 E-value=33 Score=36.33 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=25.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+|+|+|||-+|+.+|-.|.. .| .++.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~-----~g-------~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQ-----AG-------HEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 68999999999999988764 25 358888885
No 461
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=40.67 E-value=2.6e+02 Score=31.96 Aligned_cols=30 Identities=17% Similarity=0.066 Sum_probs=25.0
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCC
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 328 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~ 328 (559)
..|...|++++|.|.--.+++..+.+. .|+
T Consensus 324 ~~L~GKrvai~~gg~~~~~~~~~l~~E----lGm 353 (513)
T TIGR01861 324 ERLKGKKVCLWPGGSKLWHWAHVIEEE----MGL 353 (513)
T ss_pred HhcCCCEEEEECCchHHHHHHHHHHHh----CCC
Confidence 578889999999999999998888753 477
No 462
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=40.66 E-value=34 Score=36.32 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=26.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
..|+|+|||.+|+.+|-.|.... .| .++.++|+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~---~g-------~~V~llE~~ 36 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERY---PG-------ARIAVLEKE 36 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhC---CC-------CeEEEEeCC
Confidence 46999999999999998887531 14 468889886
No 463
>PLN02568 polyamine oxidase
Probab=40.65 E-value=17 Score=41.20 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=20.9
Q ss_pred ccceEEEeCcChHHHHHHHHHHHH
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALE 321 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~ 321 (559)
+..+|+|+|||.||+..|..|...
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~ 27 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTS 27 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhc
Confidence 346899999999999999999864
No 464
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=40.47 E-value=1.7e+02 Score=27.38 Aligned_cols=37 Identities=24% Similarity=0.270 Sum_probs=25.0
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEecCCCC
Q 008629 379 KPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPT 417 (559)
Q Consensus 379 kPtvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNPt 417 (559)
+-|++|++|..| -|+++++.+. +...-|+|-=-+||.
T Consensus 79 ~~D~~i~iS~sG--~t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 79 KGDVLLGISTSG--NSKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCEEEEEcCCC--CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 469999999977 5999988764 334455555444444
No 465
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=40.42 E-value=34 Score=37.10 Aligned_cols=33 Identities=30% Similarity=0.381 Sum_probs=26.4
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+-.+||+|||.||+..|..+.+. | +++.++|+.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~-----g-------~~v~lie~~ 35 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKL-----G-------KKVALIEKG 35 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 34699999999999999877652 5 468889983
No 466
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=40.35 E-value=22 Score=40.22 Aligned_cols=44 Identities=32% Similarity=0.312 Sum_probs=31.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCC--ChhhhcccE-----EEEcccCcccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKA--PVEETRKKI-----CLVDSKGLIVS 348 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~--s~eeA~~~i-----~lvD~~GLi~~ 348 (559)
+||+|+|||-||++.|..|.++ |. +.=||+.++ -..|++|..++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~-----g~~vt~~ea~~~~GGk~~s~~~~dg~~~E 51 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADA-----GYDVTLYEARDRLGGKVASWRDSDGNHVE 51 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhC-----CCceEEEeccCccCceeeeeecCCCCeee
Confidence 5899999999999999999885 64 344555442 12556666553
No 467
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=40.05 E-value=44 Score=36.85 Aligned_cols=85 Identities=16% Similarity=0.278 Sum_probs=55.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchh---chhhcc-ccCCCCCHHHHh
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF---KKPWAH-EHEPVNNLLDAV 375 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~---k~~fA~-~~~~~~~L~e~V 375 (559)
.+||++|||-.|-.+|..|++ .|- .+|++.|+. .+-.+.+... +..... |..+.+.|.++|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~-----~~d------~~V~iAdRs----~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li 66 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQ-----NGD------GEVTIADRS----KEKCARIAELIGGKVEALQVDAADVDALVALI 66 (389)
T ss_pred CcEEEECCchhHHHHHHHHHh-----CCC------ceEEEEeCC----HHHHHHHHhhccccceeEEecccChHHHHHHH
Confidence 479999999999999999876 242 579988874 1111111111 222221 344556899999
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHc
Q 008629 376 KVIKPTILIGSSGVGRTFTKEVIEAMAS 403 (559)
Q Consensus 376 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma~ 403 (559)
+. .+++|-+-. +-++..++++-.+
T Consensus 67 ~~--~d~VIn~~p--~~~~~~i~ka~i~ 90 (389)
T COG1748 67 KD--FDLVINAAP--PFVDLTILKACIK 90 (389)
T ss_pred hc--CCEEEEeCC--chhhHHHHHHHHH
Confidence 97 588886654 4578888877553
No 468
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=39.84 E-value=31 Score=38.63 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=18.9
Q ss_pred cceEEEeCcChHHHHHHHHHHH
Q 008629 299 EHRFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~ 320 (559)
..+|+|+|||.+|+..|-.|..
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~ 44 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQ 44 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHh
Confidence 3579999999999999988764
No 469
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=39.75 E-value=35 Score=36.42 Aligned_cols=32 Identities=16% Similarity=0.365 Sum_probs=24.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~ 34 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK-----AGI-------DNVILERQ 34 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH-----CCC-------CEEEEECC
Confidence 579999999999999977654 476 35666665
No 470
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=39.74 E-value=34 Score=35.92 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=26.2
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
...|+|+|||.+|+..|-.|.. .|+ ++.++|+.-
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~-----~G~-------~v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALAR-----AGA-------SVALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------eEEEEeCCC
Confidence 4579999999999999977654 364 577888763
No 471
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=39.57 E-value=32 Score=33.70 Aligned_cols=79 Identities=18% Similarity=0.149 Sum_probs=40.2
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchh-c--h-hhccccCCCCC
Q 008629 296 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF-K--K-PWAHEHEPVNN 370 (559)
Q Consensus 296 ~l~d~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~-k--~-~fA~~~~~~~~ 370 (559)
++.+.+++|.|+ |.-|..||+.+. + .|. ++.++|++. .+.+.+.+. . . .+.-|..+..+
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~----~-~G~-------~v~~~~r~~----~~~~~~~~~~~~~~~~~~~D~~~~~~ 66 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYL----A-EGA-------RVVIADIKP----ARARLAALEIGPAAIAVSLDVTRQDS 66 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHH----H-cCC-------EEEEEcCCH----HHHHHHHHHhCCceEEEEccCCCHHH
Confidence 467889999997 334444444443 3 363 577777641 110001100 0 0 11112222234
Q ss_pred HHHHhccc-----CCcEEEeccCCC
Q 008629 371 LLDAVKVI-----KPTILIGSSGVG 390 (559)
Q Consensus 371 L~e~V~~v-----kPtvLIG~S~~~ 390 (559)
+.++++.+ ++|+||=+.+..
T Consensus 67 ~~~~~~~~~~~~~~id~li~~ag~~ 91 (257)
T PRK07067 67 IDRIVAAAVERFGGIDILFNNAALF 91 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcC
Confidence 56666554 689999776643
No 472
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=39.56 E-value=35 Score=39.37 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=27.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
..|+|+|||.+|+.+|-.|.+ .|. ++.++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~-----~G~-------~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR-----RGW-------QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH-----CCC-------eEEEEecCC
Confidence 479999999999999988865 364 689999874
No 473
>PRK06138 short chain dehydrogenase; Provisional
Probab=39.49 E-value=55 Score=31.65 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=22.3
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.|++.+++|.||.. ||...|+..+.+ .|. ++++++++
T Consensus 2 ~~~~k~~lItG~sg---~iG~~la~~l~~-~G~-------~v~~~~r~ 38 (252)
T PRK06138 2 RLAGRVAIVTGAGS---GIGRATAKLFAR-EGA-------RVVVADRD 38 (252)
T ss_pred CCCCcEEEEeCCCc---hHHHHHHHHHHH-CCC-------eEEEecCC
Confidence 36678999999832 344444444443 352 57777764
No 474
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=39.39 E-value=36 Score=35.06 Aligned_cols=46 Identities=13% Similarity=0.120 Sum_probs=30.6
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
+..||+++|+|.-|.-+++.|+.....-.++... .--+|.++|.+-
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~-~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHP-GGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCC-CCCEEEEECCCE
Confidence 5679999999999999999998751100011100 001899999873
No 475
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=39.35 E-value=35 Score=37.15 Aligned_cols=33 Identities=30% Similarity=0.511 Sum_probs=22.8
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCcc
Q 008629 302 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 346 (559)
Q Consensus 302 iv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi 346 (559)
|||+|+|.||+.-|-.... .|+ ++.|+++.+-+
T Consensus 2 VVVvGgG~aG~~AAi~AAr-----~G~-------~VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAAR-----AGA-------KVLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHHH-----TTS--------EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHHH-----CCC-------EEEEEECCccC
Confidence 7999999999888766654 474 78899988765
No 476
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=39.19 E-value=37 Score=37.72 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=29.2
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
+++++|||+|+|..|+-||..|... .++++++-+.+
T Consensus 202 ~~gk~VvVVG~G~Sg~diA~~L~~~------------a~~V~l~~r~~ 237 (461)
T PLN02172 202 FKNEVVVVIGNFASGADISRDIAKV------------AKEVHIASRAS 237 (461)
T ss_pred cCCCEEEEECCCcCHHHHHHHHHHh------------CCeEEEEEeec
Confidence 5789999999999999999888653 25788776654
No 477
>PRK09897 hypothetical protein; Provisional
Probab=39.16 E-value=37 Score=38.73 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=26.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+|+|+|+|.+|+.+|..|+.. + ..-+|.++|+.
T Consensus 3 ~IAIIGgGp~Gl~~a~~L~~~-----~-----~~l~V~lfEp~ 35 (534)
T PRK09897 3 KIAIVGAGPTGIYTFFSLLQQ-----Q-----TPLSISIFEQA 35 (534)
T ss_pred eEEEECCcHHHHHHHHHHHhc-----C-----CCCcEEEEecC
Confidence 799999999999999999762 2 12469999984
No 478
>PRK06841 short chain dehydrogenase; Provisional
Probab=39.13 E-value=57 Score=31.72 Aligned_cols=36 Identities=31% Similarity=0.455 Sum_probs=23.4
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 296 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 296 ~l~d~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
++++.+++|.|| |..|..+|+.+. + .|. +++++++.
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~----~-~G~-------~Vi~~~r~ 48 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFA----A-KGA-------RVALLDRS 48 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHH----H-CCC-------EEEEEeCC
Confidence 467889999997 545555555554 3 363 57777764
No 479
>PRK11445 putative oxidoreductase; Provisional
Probab=39.04 E-value=35 Score=35.82 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=17.4
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 008629 301 RFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~ 320 (559)
.|+|+|||.||...|..|..
T Consensus 3 dV~IvGaGpaGl~~A~~La~ 22 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAG 22 (351)
T ss_pred eEEEECCCHHHHHHHHHHhc
Confidence 58999999999999987754
No 480
>PLN02852 ferredoxin-NADP+ reductase
Probab=39.00 E-value=21 Score=40.20 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=31.1
Q ss_pred HhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 292 LIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 292 ~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
....+-...||+|+|||.||+..|..|.... .| -+|.++|+.
T Consensus 19 ~~~~~~~~~~VaIVGaGPAGl~AA~~L~~~~---~g-------~~Vtv~E~~ 60 (491)
T PLN02852 19 SSSSTSEPLHVCVVGSGPAGFYTADKLLKAH---DG-------ARVDIIERL 60 (491)
T ss_pred CCCCCCCCCcEEEECccHHHHHHHHHHHhhC---CC-------CeEEEEecC
Confidence 3344455679999999999999999887531 24 368888876
No 481
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=39.00 E-value=34 Score=35.58 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=24.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.|+|+|||-+|+.+|-.|.+ .|. ++.++|+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~-----~G~-------~V~vle~~ 32 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAAR-----RGL-------SVTVIERS 32 (365)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 48999999999999988865 253 57888875
No 482
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=38.76 E-value=49 Score=36.41 Aligned_cols=57 Identities=21% Similarity=0.280 Sum_probs=36.1
Q ss_pred HHHHcCCCCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEE
Q 008629 261 LAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 340 (559)
Q Consensus 261 L~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lv 340 (559)
.++|-.....+.|=..||+ .++++++++|.||.+ ||...++..+.+ .|. ++.++
T Consensus 155 ~~~~~~~~~~~~d~~~~ta---------------~sl~gK~VLITGASg---GIG~aLA~~La~-~G~-------~Vi~l 208 (406)
T PRK07424 155 QNAYYCGTFTLVDKLMGTA---------------LSLKGKTVAVTGASG---TLGQALLKELHQ-QGA-------KVVAL 208 (406)
T ss_pred ccceeeeeEEEeehhcCcc---------------cCCCCCEEEEeCCCC---HHHHHHHHHHHH-CCC-------EEEEE
Confidence 3455566788999888888 246778999999733 333444444433 353 56667
Q ss_pred ccc
Q 008629 341 DSK 343 (559)
Q Consensus 341 D~~ 343 (559)
|++
T Consensus 209 ~r~ 211 (406)
T PRK07424 209 TSN 211 (406)
T ss_pred eCC
Confidence 654
No 483
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=38.70 E-value=2e+02 Score=29.60 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=27.9
Q ss_pred HHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 008629 371 LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 411 (559)
Q Consensus 371 L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 411 (559)
+.+.++. .|++|-.|... .|.-.++++|+ +..|||-
T Consensus 266 ~~~~~~~--adi~v~pS~~E-g~~~~~lEAma--~G~Pvv~ 301 (374)
T TIGR03088 266 VPALMQA--LDLFVLPSLAE-GISNTILEAMA--SGLPVIA 301 (374)
T ss_pred HHHHHHh--cCEEEeccccc-cCchHHHHHHH--cCCCEEE
Confidence 4555654 78899888754 48999999999 6789987
No 484
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=38.53 E-value=77 Score=30.41 Aligned_cols=45 Identities=27% Similarity=0.319 Sum_probs=28.1
Q ss_pred HHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 287 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 287 l~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+.++...+.-..+++|+++|+|+.|..++++... .| .+++.+++.
T Consensus 123 ~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~-----~g-------~~v~~~~~~ 167 (271)
T cd05188 123 YHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKA-----AG-------ARVIVTDRS 167 (271)
T ss_pred HHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHH-----cC-------CeEEEEcCC
Confidence 3445555544578899999999866555544432 35 357777654
No 485
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=38.28 E-value=44 Score=30.29 Aligned_cols=98 Identities=15% Similarity=0.174 Sum_probs=49.9
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCc-CCCchhc---hhhccccCCCCCHHHHhcc
Q 008629 302 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK-DSLQHFK---KPWAHEHEPVNNLLDAVKV 377 (559)
Q Consensus 302 iv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~-~~l~~~k---~~fA~~~~~~~~L~e~V~~ 377 (559)
|+|+|+|+.|.-+|-.|.++ | .++.++++... .+... ..+.-.. ....+........ ....
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-----g-------~~V~l~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~ 65 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-----G-------HDVTLVSRSPR-LEAIKEQGLTITGPDGDETVQPPIVISAP--SADA 65 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-----T-------CEEEEEESHHH-HHHHHHHCEEEEETTEEEEEEEEEEESSH--GHHH
T ss_pred CEEECcCHHHHHHHHHHHHC-----C-------CceEEEEcccc-HHhhhheeEEEEecccceecccccccCcc--hhcc
Confidence 78999999999998888653 4 45888887651 11110 0111000 0000000001111 1222
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHcCCCCc-EEEecCCC
Q 008629 378 IKPTILIGSSGVGRTFTKEVIEAMASFNEKP-LILALSNP 416 (559)
Q Consensus 378 vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erP-IIFaLSNP 416 (559)
-++|++|=+.-.. =++++++.++.+...- .|+.+-|=
T Consensus 66 ~~~D~viv~vKa~--~~~~~l~~l~~~~~~~t~iv~~qNG 103 (151)
T PF02558_consen 66 GPYDLVIVAVKAY--QLEQALQSLKPYLDPNTTIVSLQNG 103 (151)
T ss_dssp STESEEEE-SSGG--GHHHHHHHHCTGEETTEEEEEESSS
T ss_pred CCCcEEEEEeccc--chHHHHHHHhhccCCCcEEEEEeCC
Confidence 3588887433222 2678888887655442 45556663
No 486
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=38.21 E-value=35 Score=38.84 Aligned_cols=73 Identities=25% Similarity=0.357 Sum_probs=45.0
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCC--C-CCHH
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP--V-NNLL 372 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~--~-~~L~ 372 (559)
.+++-||+++|||-.|+-..+.|+. .|+ +.|.++|.+-+ +- .+|+ .|--|-+++-. . ..-.
T Consensus 9 ai~~~riLvVGaGGIGCELLKnLal-----~gf------~~IhiIDlDTI---Dl-SNLN-RQFLFrkkhVgqsKA~vA~ 72 (603)
T KOG2013|consen 9 AIKSGRILVVGAGGIGCELLKNLAL-----TGF------EEIHIIDLDTI---DL-SNLN-RQFLFRKKHVGQSKATVAA 72 (603)
T ss_pred HhccCeEEEEecCcccHHHHHHHHH-----hcC------CeeEEEeccce---ec-cchh-hhheeehhhcCchHHHHHH
Confidence 3578899999999888766666654 376 67999999833 21 1233 12122222211 1 2456
Q ss_pred HHhcccCCcEEE
Q 008629 373 DAVKVIKPTILI 384 (559)
Q Consensus 373 e~V~~vkPtvLI 384 (559)
++|++..|.+=|
T Consensus 73 ~~v~~Fnpn~~l 84 (603)
T KOG2013|consen 73 KAVKQFNPNIKL 84 (603)
T ss_pred HHHHHhCCCCce
Confidence 788888887655
No 487
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=38.19 E-value=1.8e+02 Score=28.53 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=24.4
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEecCCC
Q 008629 379 KPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNP 416 (559)
Q Consensus 379 kPtvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNP 416 (559)
+-|++|++|..| -|+++++.+. +...-|+|-=-+|+
T Consensus 111 ~~Dv~I~iS~SG--~t~~~i~~~~~ak~~g~~iI~iT~~~ 148 (192)
T PRK00414 111 EGDVLLGISTSG--NSGNIIKAIEAARAKGMKVITLTGKD 148 (192)
T ss_pred CCCEEEEEeCCC--CCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 469999999977 4999998874 33344555433333
No 488
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=38.18 E-value=36 Score=37.02 Aligned_cols=34 Identities=35% Similarity=0.594 Sum_probs=26.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCcc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 346 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi 346 (559)
+++|+|||-+|.=||+.+.+ .| +++.+||++--|
T Consensus 3 d~lIVGaGlsG~V~A~~a~~-----~g-------k~VLIvekR~HI 36 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQ-----LG-------KRVLIVEKRNHI 36 (374)
T ss_pred cEEEECCchhHHHHHHHHHH-----cC-------CEEEEEeccccC
Confidence 58999999999999994432 35 788888876444
No 489
>PRK10015 oxidoreductase; Provisional
Probab=38.17 E-value=35 Score=37.25 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=25.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
-.++|+|||.||...|-.+.+ .|+ ++.++|+.-
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~-----~G~-------~VlliEr~~ 38 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMAR-----AGL-------DVLVIERGD 38 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 479999999999999988754 365 477777653
No 490
>PRK06126 hypothetical protein; Provisional
Probab=38.03 E-value=40 Score=37.58 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=19.6
Q ss_pred ccceEEEeCcChHHHHHHHHHHH
Q 008629 298 AEHRFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~ 320 (559)
.+.+|+|+|||.+|+..|-.|..
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~ 28 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGR 28 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH
Confidence 45689999999999999977765
No 491
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=38.00 E-value=46 Score=33.42 Aligned_cols=98 Identities=19% Similarity=0.297 Sum_probs=55.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc--ccCCCCCHHHH-hcc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--EHEPVNNLLDA-VKV 377 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~--~~~~~~~L~e~-V~~ 377 (559)
+|+|+|+|..|..+|+.|.+. | .++.++|.+--.... .+.+..--.+. +....+.|.++ ++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~-----g-------~~Vv~Id~d~~~~~~---~~~~~~~~~~v~gd~t~~~~L~~agi~- 65 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE-----G-------HNVVLIDRDEERVEE---FLADELDTHVVIGDATDEDVLEEAGID- 65 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC-----C-------CceEEEEcCHHHHHH---HhhhhcceEEEEecCCCHHHHHhcCCC-
Confidence 799999999999999999762 5 468888876222111 01100001111 22223457777 55
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHcC-CCCc-EEEecCCCC
Q 008629 378 IKPTILIGSSGVGRTFTKEVIEAMASF-NEKP-LILALSNPT 417 (559)
Q Consensus 378 vkPtvLIG~S~~~g~Ft~evv~~Ma~~-~erP-IIFaLSNPt 417 (559)
+.|++|-+++.. -.--++-.|+.. ..-| +|-=..||.
T Consensus 66 -~aD~vva~t~~d--~~N~i~~~la~~~~gv~~viar~~~~~ 104 (225)
T COG0569 66 -DADAVVAATGND--EVNSVLALLALKEFGVPRVIARARNPE 104 (225)
T ss_pred -cCCEEEEeeCCC--HHHHHHHHHHHHhcCCCcEEEEecCHH
Confidence 499999888764 233444445522 2334 343355554
No 492
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=37.99 E-value=37 Score=37.94 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=19.7
Q ss_pred ccceEEEeCcChHHHHHHHHHHH
Q 008629 298 AEHRFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~ 320 (559)
.+.+|+|+|||.+|+..|..|..
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~ 31 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQ 31 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH
Confidence 45689999999999999988765
No 493
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=37.82 E-value=84 Score=32.62 Aligned_cols=106 Identities=13% Similarity=0.165 Sum_probs=55.6
Q ss_pred cccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc-ccCCCCCHHHH
Q 008629 297 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDA 374 (559)
Q Consensus 297 l~d~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~-~~~~~~~L~e~ 374 (559)
+++.+|+|.|| |..|..+++.|++. |- ..+++++|++..-...-...+...+..|.. +..+..++.++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~-----g~-----~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~ 71 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLEN-----YN-----PKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRA 71 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHh-----CC-----CcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHH
Confidence 45678999987 66777777766542 31 135788876422100000001100111211 22222457777
Q ss_pred hcccCCcEEEeccCCCCC----C------------CHHHHHHHHcCCCCcEEEecC
Q 008629 375 VKVIKPTILIGSSGVGRT----F------------TKEVIEAMASFNEKPLILALS 414 (559)
Q Consensus 375 V~~vkPtvLIG~S~~~g~----F------------t~evv~~Ma~~~erPIIFaLS 414 (559)
++. +|++|=+.+.... + +..+++++.+.+-+.|||.=|
T Consensus 72 ~~~--iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS 125 (324)
T TIGR03589 72 LRG--VDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALST 125 (324)
T ss_pred Hhc--CCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 774 8999977664321 1 235666766655567888544
No 494
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=37.77 E-value=43 Score=37.84 Aligned_cols=80 Identities=10% Similarity=0.249 Sum_probs=47.5
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc---cCCCCC
Q 008629 294 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNN 370 (559)
Q Consensus 294 g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~---~~~~~~ 370 (559)
...|...|++|+|-++-.+|+++.|... .|+. +..++.. .....+.+.+.-+.+..+ ..+...
T Consensus 300 ~~~l~Gkrv~I~gd~~~a~~l~~~L~~E----LGm~-------vv~~g~~---~~~~~~~~~~~~~~~~~~~~i~~D~~e 365 (513)
T CHL00076 300 CQNLTGKKAVVFGDATHAASMTKILARE----MGIR-------VSCAGTY---CKHDAEWFKEQVQGFCDEILITDDHTE 365 (513)
T ss_pred ccccCCCEEEEEcCchHHHHHHHHHHHh----CCCE-------EEEecCc---ccchhHHHHHHHHHhccCcEEecCHHH
Confidence 3678889999999999999999988764 4873 2233321 000000011111111110 112235
Q ss_pred HHHHhcccCCcEEEecc
Q 008629 371 LLDAVKVIKPTILIGSS 387 (559)
Q Consensus 371 L~e~V~~vkPtvLIG~S 387 (559)
+.+.|+..+||++||.|
T Consensus 366 i~~~I~~~~pdliiGs~ 382 (513)
T CHL00076 366 VGDMIARVEPSAIFGTQ 382 (513)
T ss_pred HHHHHHhcCCCEEEECc
Confidence 78889999999999976
No 495
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=37.76 E-value=1.7e+02 Score=32.11 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=26.5
Q ss_pred HHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 008629 371 LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 411 (559)
Q Consensus 371 L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 411 (559)
+.+... +.|+++=.|-.. .|.-.++++|+ +.+|+|.
T Consensus 364 v~~~l~--~aDv~vlpS~~E-g~p~~vlEAma--~G~PVVa 399 (475)
T cd03813 364 VKEYLP--KLDVLVLTSISE-GQPLVILEAMA--AGIPVVA 399 (475)
T ss_pred HHHHHH--hCCEEEeCchhh-cCChHHHHHHH--cCCCEEE
Confidence 445555 378888666543 58889999999 6889988
No 496
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=37.62 E-value=1.5e+02 Score=35.68 Aligned_cols=163 Identities=17% Similarity=0.170 Sum_probs=98.6
Q ss_pred cCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhh--------------cccEE
Q 008629 273 DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEET--------------RKKIC 338 (559)
Q Consensus 273 DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA--------------~~~i~ 338 (559)
=-..|.|=-|+.+-|++.-... -...+|.++.+-.--+|..+++..+... .|++...+ .+++.
T Consensus 191 VGpnGvGKTTTiaKLA~~~~~~--~G~kkV~lit~Dt~RigA~eQL~~~a~~-~gvpv~~~~~~~~l~~al~~~~~~D~V 267 (767)
T PRK14723 191 VGPTGVGKTTTTAKLAARCVAR--EGADQLALLTTDSFRIGALEQLRIYGRI-LGVPVHAVKDAADLRFALAALGDKHLV 267 (767)
T ss_pred ECCCCCcHHHHHHHHHhhHHHH--cCCCeEEEecCcccchHHHHHHHHHHHh-CCCCccccCCHHHHHHHHHHhcCCCEE
Confidence 4567888888888887743210 0124788888888888999999876544 57655322 23689
Q ss_pred EEcccCccccCCcCCCchhchhhcccc------------CCCCCHHHHhccc------CCcEEEeccCCCCCCCH-HHHH
Q 008629 339 LVDSKGLIVSSRKDSLQHFKKPWAHEH------------EPVNNLLDAVKVI------KPTILIGSSGVGRTFTK-EVIE 399 (559)
Q Consensus 339 lvD~~GLi~~~R~~~l~~~k~~fA~~~------------~~~~~L~e~V~~v------kPtvLIG~S~~~g~Ft~-evv~ 399 (559)
++|.-|....+.. +.+....+.+.. ....++.++++.. .+|-+| ++-..+.=+- .++.
T Consensus 268 LIDTAGRs~~d~~--l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glI-lTKLDEt~~~G~iL~ 344 (767)
T PRK14723 268 LIDTVGMSQRDRN--VSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCI-ITKLDEATHLGPALD 344 (767)
T ss_pred EEeCCCCCccCHH--HHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEE-EeccCCCCCccHHHH
Confidence 9999998776542 333333333211 1113577777554 466666 2221111111 3443
Q ss_pred HHHcCCCCcEEEecCC----CCCCCCCCHHHHhcccCCcEEEe---eCCCCCCcee
Q 008629 400 AMASFNEKPLILALSN----PTSQSECTAEEAYTWSKGRAIFA---SGSPFDPFEY 448 (559)
Q Consensus 400 ~Ma~~~erPIIFaLSN----Pt~~~EctpedA~~wt~G~aifA---sGSPF~pv~~ 448 (559)
. ......||.| ++| |...-+.+|++..+ .||. -+|||.|-+-
T Consensus 345 i-~~~~~lPI~y-it~GQ~VPdDL~~a~~~~lv~-----~ll~~~~~~~~~~~~~~ 393 (767)
T PRK14723 345 T-VIRHRLPVHY-VSTGQKVPEHLELAQADELVD-----RAFATPRRGALFAPSEA 393 (767)
T ss_pred H-HHHHCCCeEE-EecCCCChhhcccCCHHHHHH-----HHhcccccCCCCCCccc
Confidence 3 3345799999 776 77788888888764 4554 2578887754
No 497
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=37.62 E-value=1.4e+02 Score=26.37 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=23.8
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEecCC
Q 008629 379 KPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSN 415 (559)
Q Consensus 379 kPtvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSN 415 (559)
+.|++|++|-.|. |+|+++.+. +...-||| ++++
T Consensus 43 ~~dl~I~iS~SG~--t~e~i~~~~~a~~~g~~iI-~IT~ 78 (119)
T cd05017 43 RKTLVIAVSYSGN--TEETLSAVEQAKERGAKIV-AITS 78 (119)
T ss_pred CCCEEEEEECCCC--CHHHHHHHHHHHHCCCEEE-EEeC
Confidence 4699999999774 899998764 33344555 4554
No 498
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=37.47 E-value=44 Score=38.50 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=28.3
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
...||+|+|+|.||+..|..|... |. ++.++|+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~-----G~-------~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA-----GV-------QVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc-----CC-------cEEEEeCCC
Confidence 579999999999999999888753 64 477787663
No 499
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=37.45 E-value=2.4e+02 Score=29.82 Aligned_cols=113 Identities=19% Similarity=0.267 Sum_probs=70.9
Q ss_pred HHHHHHHHcCCCCeeecC-CcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcc
Q 008629 257 AFELLAKYGTTHLVFNDD-IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 335 (559)
Q Consensus 257 Af~lL~ryr~~~~~FnDD-iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~ 335 (559)
+.+.+.+| .++|++|=+ -..=-.=+|+=++.-.+..| .|++.||.++|-.+ .+++-++.++.+ .|+
T Consensus 107 ~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g-~l~g~~v~~vGd~~---~v~~Sl~~~l~~-~g~------- 173 (304)
T TIGR00658 107 DVEELAKY-ASVPVINGLTDLFHPCQALADLLTIIEHFG-KLKGVKVVYVGDGN---NVCNSLMLAGAK-LGM------- 173 (304)
T ss_pred HHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhC-CCCCcEEEEEeCCC---chHHHHHHHHHH-cCC-------
Confidence 44444554 468999942 22223456777776666666 49999999999863 478888777766 464
Q ss_pred cEEEEcccCccccCCcCCCchhchhhccc-c---CCCCCHHHHhcccCCcEEEecc
Q 008629 336 KICLVDSKGLIVSSRKDSLQHFKKPWAHE-H---EPVNNLLDAVKVIKPTILIGSS 387 (559)
Q Consensus 336 ~i~lvD~~GLi~~~R~~~l~~~k~~fA~~-~---~~~~~L~e~V~~vkPtvLIG~S 387 (559)
++.++-.+++.-+. .+.+.-+.+++. . ....++.++++. .||+.-.+
T Consensus 174 ~v~~~~P~~~~~~~---~~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvy~~~ 224 (304)
T TIGR00658 174 DVVVATPEGYEPDA---DIVKKAQEIAKENGGSVELTHDPVEAVKG--ADVIYTDV 224 (304)
T ss_pred EEEEECCchhcCCH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcC
Confidence 68888887763321 111122233332 1 123689999996 99998754
No 500
>PTZ00367 squalene epoxidase; Provisional
Probab=37.39 E-value=80 Score=36.23 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=23.3
Q ss_pred HHhCCCc---ccceEEEeCcChHHHHHHHHHHH
Q 008629 291 KLIGGTL---AEHRFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 291 r~~g~~l---~d~riv~~GAGsAgiGia~ll~~ 320 (559)
++.++|. .+-+|+|+|||.||...|-.|.+
T Consensus 22 ~~~~~~~~~~~~~dViIVGaGiaGlalA~aLar 54 (567)
T PTZ00367 22 RLRFKPARTNYDYDVIIVGGSIAGPVLAKALSK 54 (567)
T ss_pred HHccCccccccCccEEEECCCHHHHHHHHHHHh
Confidence 4455665 45579999999999999988765
Done!