BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008630
(559 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QEO|A Chain A, S74e-R104m-D133a Dck Variant In Complex With
L-Deoxythymidine And Udp
pdb|3QEO|B Chain B, S74e-R104m-D133a Dck Variant In Complex With
L-Deoxythymidine And Udp
Length = 279
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 14/113 (12%)
Query: 427 NLNKVMKEDVHDRPDPAAKDMNLDSSDDETQDMNIDTGRQRQQNPVPTAGKQGFKYVEPV 486
N+ K + ED P+P A+ N+ S+ DE +++ ++ K G ++ +
Sbjct: 58 NILKQLSEDWEVVPEPVARWSNVQSTQDEFEELTMEQ-------------KNGGNVLQMM 104
Query: 487 RKKVERENLKGVECKQCKKFYDAVLPSDGGKESDGSKKTLRCEHHEGVSRHRY 539
+K ER + + C A L S GK D K L E +R+ +
Sbjct: 105 YEKPERWSFT-FQTYACLSMIRAQLASLNGKLKDAEKPVLFFERSVYSARYIF 156
>pdb|1GPL|A Chain A, Rp2 Lipase
Length = 432
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 514 DGGKESDGSKKTLRCEHHEGVSRHRYKYIPPLTPEGF 550
+GGK+ G K + C HH + Y + L PEGF
Sbjct: 231 NGGKDMPGCKTGISCNHHRSI---EYYHSSILNPEGF 264
>pdb|3HP1|A Chain A, Crystal Structure Of Human Dck R104mD133A IN COMPLEX WITH
L-Dt And Adp
Length = 280
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 14/113 (12%)
Query: 427 NLNKVMKEDVHDRPDPAAKDMNLDSSDDETQDMNIDTGRQRQQNPVPTAGKQGFKYVEPV 486
N+ K + ED P+P A+ N+ S+ DE +++ + + K G ++ +
Sbjct: 59 NILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTM-------------SQKNGGNVLQMM 105
Query: 487 RKKVERENLKGVECKQCKKFYDAVLPSDGGKESDGSKKTLRCEHHEGVSRHRY 539
+K ER + + C A L S GK D K L E +R+ +
Sbjct: 106 YEKPERWSFT-FQTYACLSMIRAQLASLNGKLKDAEKPVLFFERSVYSARYIF 157
>pdb|2GTV|X Chain X, Nmr Structure Of Monomeric Chorismate Mutase From
Methanococcus Jannaschii
Length = 104
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 9/95 (9%)
Query: 78 KACEIKKKCDQLEEHEEKTKT-----LIAELNSHKKIVDELQRQLGAKTEEVAREKELTE 132
K EI+KK D+++ K + LIAE NS K V E++ QLG + REK + +
Sbjct: 4 KLAEIRKKIDEIDNKILKARWPWAEKLIAERNSLAKDVAEIKNQLGIPINDPEREKYIYD 63
Query: 133 NLFKKIEKLSLD----ISHYKQLLADEKKEKKCFL 163
+ K ++ ++D I +++L+ K +K +L
Sbjct: 64 RIRKLCKEHNVDENIGIKIFQRLIEHNKALQKQYL 98
>pdb|2KW0|A Chain A, Solution Structure Of N-Terminal Domain Of Ccmh From
Escherichia.Coli
Length = 90
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 10/46 (21%)
Query: 252 DSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFG 297
DSN + ++ QK ELM E K +++++D Y+ A++G
Sbjct: 36 DSNSMIATDLRQKVYELMQEGKSKKEIVD----------YMVARYG 71
>pdb|3QEJ|A Chain A, S74e-Dck Mutant In Complex With Udp
pdb|3QEJ|B Chain B, S74e-Dck Mutant In Complex With Udp
pdb|3QEN|A Chain A, S74e Dck In Complex With 5-Bromodeoxycytidine And Udp
pdb|3QEN|B Chain B, S74e Dck In Complex With 5-Bromodeoxycytidine And Udp
Length = 279
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 16/115 (13%)
Query: 427 NLNKVMKEDVHDRPDPAAKDMNLDSSDDETQDMNIDTGRQRQQNPVPTAGKQGFKYVEPV 486
N+ K + ED P+P A+ N+ S+ DE +++ ++ K G ++ +
Sbjct: 58 NILKQLSEDWEVVPEPVARWSNVQSTQDEFEELTMEQ-------------KNGGNVLQMM 104
Query: 487 RKKVERENLKGVECKQCKKFYDAVLPSDGGKESDGSKKTLRCEHHEGVSRHRYKY 541
+K ER + + C A L S GK D K L E V RY +
Sbjct: 105 YEKPERWSFT-FQTYACLSRIRAQLASLNGKLKDAEKPVLFFE--RSVYSDRYIF 156
>pdb|2ZI4|A Chain A, C4s Dck Variant Of Dck In Complex With L-Da+adp
pdb|2ZI5|A Chain A, C4s Dck Variant Of Dck In Complex With L-Da+udp
pdb|2ZI5|B Chain B, C4s Dck Variant Of Dck In Complex With L-Da+udp
pdb|2ZI5|C Chain C, C4s Dck Variant Of Dck In Complex With L-Da+udp
pdb|2ZI5|D Chain D, C4s Dck Variant Of Dck In Complex With L-Da+udp
pdb|2ZI6|A Chain A, C4s Dck Variant Of Dck In Complex With D-Da+udp
pdb|2ZI6|B Chain B, C4s Dck Variant Of Dck In Complex With D-Da+udp
pdb|2ZI6|C Chain C, C4s Dck Variant Of Dck In Complex With D-Da+udp
pdb|2ZI6|D Chain D, C4s Dck Variant Of Dck In Complex With D-Da+udp
pdb|2ZI7|B Chain B, C4s Dck Variant Of Dck In Complex With D-Dg+udp
pdb|2ZI7|A Chain A, C4s Dck Variant Of Dck In Complex With D-Dg+udp
pdb|2ZIA|A Chain A, C4s Dck Variant Of Dck In Complex With Cladribine+udp
pdb|2ZIA|B Chain B, C4s Dck Variant Of Dck In Complex With Cladribine+udp
pdb|3MJR|A Chain A, Human Dck Complex With Acyclic Nucleoside
pdb|3MJR|B Chain B, Human Dck Complex With Acyclic Nucleoside
pdb|3MJR|C Chain C, Human Dck Complex With Acyclic Nucleoside
pdb|3MJR|D Chain D, Human Dck Complex With Acyclic Nucleoside
pdb|3KFX|A Chain A, Human Dck Complex With 5-Me Dc And Adp
pdb|3KFX|B Chain B, Human Dck Complex With 5-Me Dc And Adp
Length = 279
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 16/115 (13%)
Query: 427 NLNKVMKEDVHDRPDPAAKDMNLDSSDDETQDMNIDTGRQRQQNPVPTAGKQGFKYVEPV 486
N+ K + ED P+P A+ N+ S+ DE +++ + + K G ++ +
Sbjct: 58 NILKQLSEDWEVVPEPVARWSNVQSTQDEFEELTM-------------SQKNGGNVLQMM 104
Query: 487 RKKVERENLKGVECKQCKKFYDAVLPSDGGKESDGSKKTLRCEHHEGVSRHRYKY 541
+K ER + + C A L S GK D K L E V RY +
Sbjct: 105 YEKPERWSFT-FQTYACLSRIRAQLASLNGKLKDAEKPVLFFE--RSVYSDRYIF 156
>pdb|2NO9|A Chain A, The Structure Of Deoxycytidine Kinase Complexed With
Troxacitabine And Adp.
pdb|2NO9|B Chain B, The Structure Of Deoxycytidine Kinase Complexed With
Troxacitabine And Adp.
pdb|2NOA|A Chain A, The Structure Of Deoxycytidine Kinase Complexed With
Lamivudine And Adp.
pdb|2NOA|B Chain B, The Structure Of Deoxycytidine Kinase Complexed With
Lamivudine And Adp.
pdb|2NO0|A Chain A, C4s Dck Variant Of Dck In Complex With Gemcitabine+adp
pdb|2NO0|B Chain B, C4s Dck Variant Of Dck In Complex With Gemcitabine+adp
pdb|2NO1|A Chain A, C4s Dck Variant Of Dck In Complex With D-Dc+adp
pdb|2NO1|B Chain B, C4s Dck Variant Of Dck In Complex With D-Dc+adp
pdb|2NO6|A Chain A, C4s Dck Variant Of Dck In Complex With Ftc+adp
pdb|2NO6|B Chain B, C4s Dck Variant Of Dck In Complex With Ftc+adp
pdb|2NO7|A Chain A, C4s Dck Variant Of Dck In Complex With L-dc+adp
pdb|2NO7|B Chain B, C4s Dck Variant Of Dck In Complex With L-dc+adp
Length = 280
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 16/115 (13%)
Query: 427 NLNKVMKEDVHDRPDPAAKDMNLDSSDDETQDMNIDTGRQRQQNPVPTAGKQGFKYVEPV 486
N+ K + ED P+P A+ N+ S+ DE +++ + + K G ++ +
Sbjct: 59 NILKQLSEDWEVVPEPVARWSNVQSTQDEFEELTM-------------SQKNGGNVLQMM 105
Query: 487 RKKVERENLKGVECKQCKKFYDAVLPSDGGKESDGSKKTLRCEHHEGVSRHRYKY 541
+K ER + + C A L S GK D K L E V RY +
Sbjct: 106 YEKPERWSFT-FQTYACLSRIRAQLASLNGKLKDAEKPVLFFE--RSVYSDRYIF 157
>pdb|2ZI3|A Chain A, C4s-E247a Dck Variant Of Dck In Complex With D-Da+adp
pdb|2ZI3|B Chain B, C4s-E247a Dck Variant Of Dck In Complex With D-Da+adp
pdb|2ZI9|A Chain A, C4s-E247a Dck Variant Of Dck In Complex With
Cladribine+adp
pdb|2ZI9|B Chain B, C4s-E247a Dck Variant Of Dck In Complex With
Cladribine+adp
Length = 279
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 16/115 (13%)
Query: 427 NLNKVMKEDVHDRPDPAAKDMNLDSSDDETQDMNIDTGRQRQQNPVPTAGKQGFKYVEPV 486
N+ K + ED P+P A+ N+ S+ DE +++ + + K G ++ +
Sbjct: 58 NILKQLSEDWEVVPEPVARWSNVQSTQDEFEELTM-------------SQKNGGNVLQMM 104
Query: 487 RKKVERENLKGVECKQCKKFYDAVLPSDGGKESDGSKKTLRCEHHEGVSRHRYKY 541
+K ER + + C A L S GK D K L E V RY +
Sbjct: 105 YEKPERWSFT-FQTYACLSRIRAQLASLNGKLKDAEKPVLFFE--RSVYSDRYIF 156
>pdb|1S2X|A Chain A, Crystal Structure Of Cag-Z From Helicobacter Pylori
Length = 206
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
Query: 216 EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKR 275
E E+Q +LD L ANE++ F + + DSND Q+ ++ EL +K
Sbjct: 14 EAERQKILDSNSSLXRNANEVRDKFIQNYATS--LKDSNDP--QDFLRRVQELRINXQKN 69
Query: 276 RDVIDAYKRLKSQYNYI 292
DAY YNY+
Sbjct: 70 FISFDAY------YNYL 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.129 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,594,878
Number of Sequences: 62578
Number of extensions: 650048
Number of successful extensions: 1745
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1639
Number of HSP's gapped (non-prelim): 125
length of query: 559
length of database: 14,973,337
effective HSP length: 104
effective length of query: 455
effective length of database: 8,465,225
effective search space: 3851677375
effective search space used: 3851677375
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (25.4 bits)