BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008630
(559 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZRT1|GR1_ARATH Protein gamma response 1 OS=Arabidopsis thaliana GN=GR1 PE=1 SV=2
Length = 588
Score = 313 bits (803), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 218/553 (39%), Positives = 316/553 (57%), Gaps = 57/553 (10%)
Query: 14 ENKTLKFDKAKLLQEQEEKTGQLLVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQ 73
EN+ +K DK KL +E KT + ++L S + I+ LK++++ +SK V +++ L++
Sbjct: 86 ENQQIKSDKEKLAEELG-KTASMPLRLTSLQGYIDHLKKKMKSRSKMVGDARDLYYRLVE 144
Query: 74 LAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTEN 133
L Q K + E E+ +++E+ S K + LQ +L KT +TEN
Sbjct: 145 LLQVKGLD--------ELSEDGINMIVSEVKSLKMKTEFLQEELSKKTL-------VTEN 189
Query: 134 LFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKL 193
L KK+E LS + + ++ L+ ++EK+ T+ +VFEENV RL+E L +KT+EVEEG+
Sbjct: 190 LLKKLEYLSTEAADGERKLSSVEEEKQRLKTRLQVFEENVGRLEEILRQKTDEVEEGKTA 249
Query: 194 QEQLLQQIDFKSSEITKNKQEF---EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWG 250
E L ++ E+ KQ+ EKEK +++ K + + + G
Sbjct: 250 LEVLQGKLKLTEREMLNCKQKIADHEKEKTVVMGKAKD-------------DMQGRHGSY 296
Query: 251 MDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFGLTTDKMTSEHKVE 310
+ + L + E+K+ EL E KK +++ K+ KSQ+ ++C +F T D + + +E
Sbjct: 297 LADLEALRCQSEEKSFELAMEIKKNKELSRTCKKWKSQHTFLCKRFNFTPDSVLHQSSLE 356
Query: 311 EESDSLT-HRRNPIP--FPDKHSDASAAYCEINKVKKEVGLS-DNLDNEKKAKSVQTSSF 366
+E+ + H ++ I KHS+ + +KV+ G S +N + E K+VQT
Sbjct: 357 DENKEIGQHEKSAISSYLERKHSETAEG---ADKVRIGTGSSGNNYEKESIIKTVQTPI- 412
Query: 367 HSSSSGFIVTEKCPSNVKSAPIAGTKRPASSWRETRSRQYEGGPDPHDDFLDTPFENIRG 426
+S IV + P K ++G KRPAS WR+TRSRQ GG DPHDDFLDTP EN++
Sbjct: 413 --TSISPIV--RSPGAAKPPQLSGLKRPASIWRDTRSRQSPGGHDPHDDFLDTPIENVK- 467
Query: 427 NLNKVMKEDVHDRPDPAAKDMNLDSSDDETQDMNIDTGRQRQQNPVPTAGKQGFKYVEPV 486
+V E+ H D A KD SDDETQDMN RQ+ + K+ FK+VE V
Sbjct: 468 ---RVAGEEKHVH-DVAKKD----DSDDETQDMNPKPSPSRQRIQIAETSKKSFKHVESV 519
Query: 487 RKKVERENLKGVECKQCKKFYDAVLPSDGGKESDGSKKTLRCEHHEGVSRHRYKYIPPLT 546
RKK ERENLKG+ECKQCKKFYDAV P + G K+LRCEHHEGVSRHRY+Y PP+T
Sbjct: 520 RKKAERENLKGIECKQCKKFYDAVHPENEG----NGNKSLRCEHHEGVSRHRYRYAPPMT 575
Query: 547 PEGFWNIGFESEM 559
PEGFWNIGFESEM
Sbjct: 576 PEGFWNIGFESEM 588
>sp|F1R983|COM1_DANRE DNA endonuclease RBBP8 OS=Danio rerio GN=rbbp8 PE=2 SV=1
Length = 651
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 47/80 (58%), Gaps = 12/80 (15%)
Query: 478 QGFKYVEPVRKKVERENLKGVECKQCKKFYDAVLPSDGGKESDGSKKTLRCEHHEGVSRH 537
+ F VE VRKK ER LKG CK+C+ +Y A LP E + KK C SRH
Sbjct: 543 KSFACVEVVRKKDERRKLKGHYCKECEVYY-ADLP-----EEEREKKLTSC------SRH 590
Query: 538 RYKYIPPLTPEGFWNIGFES 557
RY+YIPP TPE FW +GF S
Sbjct: 591 RYRYIPPSTPENFWEVGFPS 610
>sp|Q80YR6|COM1_MOUSE DNA endonuclease RBBP8 OS=Mus musculus GN=Rbbp8 PE=1 SV=1
Length = 893
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 12/80 (15%)
Query: 478 QGFKYVEPVRKKVERENLKGVECKQCKKFYDAVLPSDGGKESDGSKKTLRCEHHEGVSRH 537
Q F ++E VRKK ER L G CK+C+ +Y A LP++ + KK C SRH
Sbjct: 787 QNFPHIEVVRKKEERRKLLGHTCKECEIYY-ADLPAE-----EREKKLASC------SRH 834
Query: 538 RYKYIPPLTPEGFWNIGFES 557
R++YIPP TPE FW +GF S
Sbjct: 835 RFRYIPPNTPENFWEVGFPS 854
>sp|Q99708|COM1_HUMAN DNA endonuclease RBBP8 OS=Homo sapiens GN=RBBP8 PE=1 SV=2
Length = 897
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 12/80 (15%)
Query: 478 QGFKYVEPVRKKVERENLKGVECKQCKKFYDAVLPSDGGKESDGSKKTLRCEHHEGVSRH 537
Q F ++E VRKK ER L G CK+C+ +Y A +P++ + KK C SRH
Sbjct: 791 QNFPHIEVVRKKEERRKLLGHTCKECEIYY-ADMPAE-----EREKKLASC------SRH 838
Query: 538 RYKYIPPLTPEGFWNIGFES 557
R++YIPP TPE FW +GF S
Sbjct: 839 RFRYIPPNTPENFWEVGFPS 858
>sp|F6SNN2|COM1_XENTR DNA endonuclease RBBP8 OS=Xenopus tropicalis GN=rbbp8 PE=3 SV=1
Length = 867
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 47/78 (60%), Gaps = 12/78 (15%)
Query: 480 FKYVEPVRKKVERENLKGVECKQCKKFYDAVLPSDGGKESDGSKKTLRCEHHEGVSRHRY 539
F ++E VRKK ER + G CK+C+ +Y A LP E + +KK C SRHR+
Sbjct: 763 FPHIEVVRKKDERRKMLGHTCKECELYY-ADLP-----EEERAKKLASC------SRHRF 810
Query: 540 KYIPPLTPEGFWNIGFES 557
+YIPP TPE FW +GF S
Sbjct: 811 RYIPPSTPENFWEVGFPS 828
>sp|Q6GNV6|COM1_XENLA DNA endonuclease RBBP8 OS=Xenopus laevis GN=rbbp8 PE=1 SV=1
Length = 856
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 12/78 (15%)
Query: 480 FKYVEPVRKKVERENLKGVECKQCKKFYDAVLPSDGGKESDGSKKTLRCEHHEGVSRHRY 539
F ++E VR K ER + G CK+C+ +Y A LP E + +KK C SRHR+
Sbjct: 752 FPHIEVVRNKEERRKMLGHTCKECELYY-ADLP-----EEERAKKLASC------SRHRF 799
Query: 540 KYIPPLTPEGFWNIGFES 557
+YIPP TPE FW +GF S
Sbjct: 800 RYIPPSTPENFWEVGFPS 817
>sp|B1WC58|COM1_RAT DNA endonuclease RBBP8 OS=Rattus norvegicus GN=Rbbp8 PE=2 SV=1
Length = 893
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 47/80 (58%), Gaps = 12/80 (15%)
Query: 478 QGFKYVEPVRKKVERENLKGVECKQCKKFYDAVLPSDGGKESDGSKKTLRCEHHEGVSRH 537
Q F ++E VRKK ER L G CK+C+ +Y A LP++ + KK C SRH
Sbjct: 787 QNFPHIEVVRKKEERRKLLGHTCKECEIYY-ADLPAE-----EREKKLASC------SRH 834
Query: 538 RYKYIPPLTPEGFWNIGFES 557
R++YIP TPE FW +GF S
Sbjct: 835 RFRYIPTNTPENFWEVGFPS 854
>sp|Q59037|SMC_METJA Chromosome partition protein Smc OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=smc PE=3 SV=2
Length = 1169
Score = 36.2 bits (82), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 112/223 (50%), Gaps = 31/223 (13%)
Query: 31 EKTGQLLVKLESQRCEI---NELK-QELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKC 86
E T +++ K E ++ EI N +K +ELE K+K++ E + ++ EI+ K
Sbjct: 717 ENTLEIIKKNEMRKREIAEKNTIKIKELELKNKDILEELEELNLKREEILNRINEIESKI 776
Query: 87 DQLEEHEEKTKTLIAELNSHKKI--VDELQRQLGAKTEEVAR-----EKELT---ENLFK 136
++L E EK + E S + + ++E++ +L +E A+ +K LT E L
Sbjct: 777 NELIERREKIINELKEYESDENLKRMNEIEGELKILEKEKAKLKNEIDKGLTLVKEILIP 836
Query: 137 KIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQ 196
KIE+L+ +S + K + E+N+S +E + K +EE RK E+
Sbjct: 837 KIEELNKKVSE--------------LINKKVILEKNISFYKESIEKNLSILEEKRKRYEE 882
Query: 197 L---LQQIDFKSSEITKNKQEFEKEKQLLLDKVRGLEEKANEL 236
L L+++ K ++ K + E+E++ +L KVR +E + NEL
Sbjct: 883 LAKNLKELTEKKEQLEKEIETLERERREILRKVRDIENRINEL 925
>sp|Q6AW69|CGNL1_MOUSE Cingulin-like protein 1 OS=Mus musculus GN=Cgnl1 PE=1 SV=2
Length = 1298
Score = 36.2 bits (82), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 99/209 (47%), Gaps = 24/209 (11%)
Query: 12 VEENKTLKFDKAKLLQEQEEKTGQLLVKLESQRCEINELKQELEFKSKEVEGVKEMQKGL 71
+E LK D+++L+++ E+K QL ++LE +R + L + + + +++E ++
Sbjct: 1046 LEAKSHLKDDRSRLIKQMEDKVSQLEIELEEERTNADLLSERITWSREQMEQMRS----- 1100
Query: 72 IQLAQSKACEIKKKCDQ--LEEHEEKTKTLIAEL-NSHKKIVDELQRQLGAKTEEVAREK 128
+L Q KA + +CD+ LE + K+ I L S++ + L Q+ A+ E+
Sbjct: 1101 -ELLQEKAAKQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARIAELEDRL 1159
Query: 129 ELTEN-----------LFKKIEKLSLDISHYKQLLADEKKEK----KCFLTKFEVFEENV 173
E E L +K+++L + + L D+K + K + E EE +
Sbjct: 1160 ENEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEI 1219
Query: 174 SRLQEELTKKTEEVEEGRKLQEQLLQQID 202
RL+ K E+EE + EQL Q++
Sbjct: 1220 DRLESSKKKLQRELEEQMGVNEQLQGQLN 1248
>sp|P13540|MYH7_MESAU Myosin-7 OS=Mesocricetus auratus GN=MYH7 PE=2 SV=2
Length = 1934
Score = 33.5 bits (75), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 99/213 (46%), Gaps = 35/213 (16%)
Query: 14 ENKTLKFDKAKLLQEQEEKTGQLLVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQ 73
ENK L+ ++ L EQ TG+ + +LE R ++ K EL+ +E E E ++G I
Sbjct: 1500 ENKNLQ-EEISDLTEQLGSTGKSIHELEKIRKQLEAEKMELQSALEEAEASLEHEEGNIL 1558
Query: 74 LAQSK----ACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKE 129
AQ + EI++K + +E E+ K +H ++VD LQ L A+T
Sbjct: 1559 RAQLEFNQIKAEIERKLAEKDEEMEQAK------RNHLRVVDSLQTSLDAETRSRNEALR 1612
Query: 130 LTENLFKKIEKLSLDISHYKQLLADEKKEKKCFL-----TKFEV---------FEENVSR 175
+ + + + ++ + +SH ++ A+ +K+ K T+ ++ +EN++
Sbjct: 1613 VKKKMEGDLNEMEIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAI 1672
Query: 176 LQ----------EELTKKTEEVEEGRKLQEQLL 198
++ EEL E+ E RKL EQ L
Sbjct: 1673 VERRNNLLQAELEELRAVVEQTERSRKLAEQEL 1705
>sp|P02564|MYH7_RAT Myosin-7 OS=Rattus norvegicus GN=Myh7 PE=2 SV=2
Length = 1935
Score = 33.1 bits (74), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 99/213 (46%), Gaps = 35/213 (16%)
Query: 14 ENKTLKFDKAKLLQEQEEKTGQLLVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQ 73
ENK L+ ++ L EQ TG+ + +LE R ++ K EL+ +E E E ++G I
Sbjct: 1501 ENKNLQ-EEISDLTEQLGSTGKSIHELEKIRKQLEAEKLELQSALEEAEASLEHEEGKIL 1559
Query: 74 LAQSK----ACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKE 129
AQ + EI++K + +E E+ K +H ++VD LQ L A+T
Sbjct: 1560 RAQLEFNQIKAEIERKLAEKDEEMEQAK------RNHLRVVDSLQTSLDAETRSRNEALR 1613
Query: 130 LTENLFKKIEKLSLDISHYKQLLADEKKEKKCFL-----TKFEV---------FEENVSR 175
+ + + + ++ + +SH ++ A+ +K+ K T+ ++ +EN++
Sbjct: 1614 VKKKMEGDLNEMEIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAI 1673
Query: 176 LQ----------EELTKKTEEVEEGRKLQEQLL 198
++ EEL E+ E RKL EQ L
Sbjct: 1674 VERRNNLLQAELEELRAVVEQTERSRKLAEQEL 1706
>sp|P12883|MYH7_HUMAN Myosin-7 OS=Homo sapiens GN=MYH7 PE=1 SV=5
Length = 1935
Score = 33.1 bits (74), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 99/213 (46%), Gaps = 35/213 (16%)
Query: 14 ENKTLKFDKAKLLQEQEEKTGQLLVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQ 73
ENK L+ ++ L EQ +G+ + +LE R ++ K EL+ +E E E ++G I
Sbjct: 1501 ENKNLQ-EEISDLTEQLGSSGKTIHELEKVRKQLEAEKMELQSALEEAEASLEHEEGKIL 1559
Query: 74 LAQSK----ACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKE 129
AQ + EI++K + +E E+ K +H ++VD LQ L A+T
Sbjct: 1560 RAQLEFNQIKAEIERKLAEKDEEMEQAK------RNHLRVVDSLQTSLDAETRSRNEALR 1613
Query: 130 LTENLFKKIEKLSLDISHYKQLLADEKKEKKCFL-----TKFEV---------FEENVSR 175
+ + + + ++ + +SH ++ A+ +K+ K T+ ++ +EN++
Sbjct: 1614 VKKKMEGDLNEMEIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAI 1673
Query: 176 LQ----------EELTKKTEEVEEGRKLQEQLL 198
++ EEL E+ E RKL EQ L
Sbjct: 1674 VERRNNLLQAELEELRAVVEQTERSRKLAEQEL 1706
>sp|Q90988|SMC2_CHICK Structural maintenance of chromosomes protein 2 OS=Gallus gallus
GN=SMC2 PE=2 SV=1
Length = 1189
Score = 33.1 bits (74), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 103/217 (47%), Gaps = 30/217 (13%)
Query: 47 INELKQELEFKSKEVEGVKEMQKGLIQ---LAQSKACEIKKKCDQLEEHEEKTKTLIA-- 101
+ E +QE+E E+E +K+ Q Q AQ +K++ LE KT+ +
Sbjct: 812 MKEKQQEVEALVLELEQLKQEQASYKQQSEAAQQAIASLKEQVSALEAEAVKTRESLKNA 871
Query: 102 --ELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEK--- 156
EL+S K +++E + + AK+ ++ + +E L I L DI+ Y+Q AD
Sbjct: 872 ENELSSEKGLMEERTKDIKAKSAKIEKYREQNNELQLSINALEHDINKYQQETADASSTL 931
Query: 157 ----KEKKCFLTKFEVF--------------EENVSRLQEELTKKTEEVEEGRKLQEQ-L 197
KE K ++ E+F +E +LQ+ LTKK E++E+ ++ L
Sbjct: 932 DKLLKEYKWIASEKELFGQADTTYDFEANNPKETGQKLQKLLTKK-EKLEKSLNMRAMNL 990
Query: 198 LQQIDFKSSEITKNKQEFEKEKQLLLDKVRGLEEKAN 234
L + + + +++ K K+ E +K +L + L+ K N
Sbjct: 991 LSEAEERYNDLMKKKRMVENDKIKILATIEELDRKKN 1027
>sp|Q6RT24|CENPE_MOUSE Centromere-associated protein E OS=Mus musculus GN=Cenpe PE=1 SV=1
Length = 2474
Score = 32.7 bits (73), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 114/221 (51%), Gaps = 29/221 (13%)
Query: 11 AVEENKTLKFD---KAKLLQEQEEKTGQLLVKLESQRCEINELKQELEFKSKEVEGVKEM 67
A E N+ L+ D K KLL+E+EE+ L +++Q+ E ++K +L + S E +K+
Sbjct: 569 AEEYNQDLENDLSSKVKLLKEKEEQIKNLQEYIDAQKSE--KMKIDLSYTSDATEDLKQA 626
Query: 68 QKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDE----LQRQLGAKTEE 123
+ L L + A + KK+ L + K I EL+ +K ++ QRQL AK
Sbjct: 627 MRTLSDL-DTVALDAKKESAFLRSENLELKEKINELSDSRKQMESDIQMYQRQLEAK--- 682
Query: 124 VAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKK 183
K++ +L K+++ +IS L+ + K L+ E E+ ++ LQ+EL K
Sbjct: 683 ----KKMQTDLDKELQLAFQEISKLSALV-----DGKGLLSNLE-LEKRITDLQKELNK- 731
Query: 184 TEEVEEGRKLQEQ--LLQQIDFKSSEI-TKNKQEFEKEKQL 221
E EE + LQE+ LL ++ SE+ T ++ +EK ++L
Sbjct: 732 --EAEEKQTLQEEVNLLSELKSLPSEVETLRRELYEKSEEL 770
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.128 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 207,254,625
Number of Sequences: 539616
Number of extensions: 9421306
Number of successful extensions: 63289
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 3475
Number of HSP's that attempted gapping in prelim test: 41785
Number of HSP's gapped (non-prelim): 13179
length of query: 559
length of database: 191,569,459
effective HSP length: 123
effective length of query: 436
effective length of database: 125,196,691
effective search space: 54585757276
effective search space used: 54585757276
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)