Query 008630
Match_columns 559
No_of_seqs 149 out of 181
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 14:35:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008630.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008630hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0965 Predicted RNA-binding 100.0 1.8E-37 4E-42 337.9 -6.2 477 30-558 32-513 (988)
2 PF08573 SAE2: DNA repair prot 99.9 6.8E-28 1.5E-32 209.4 5.1 77 481-557 1-93 (93)
3 TIGR02169 SMC_prok_A chromosom 99.2 1.5E-07 3.2E-12 111.3 40.9 204 85-288 292-498 (1164)
4 TIGR02169 SMC_prok_A chromosom 99.2 6.4E-07 1.4E-11 106.0 43.5 126 170-295 370-498 (1164)
5 TIGR02168 SMC_prok_B chromosom 99.1 8.2E-07 1.8E-11 104.6 42.0 104 38-141 232-335 (1179)
6 TIGR02168 SMC_prok_B chromosom 99.1 5.5E-07 1.2E-11 106.1 39.9 71 221-291 870-940 (1179)
7 PF07888 CALCOCO1: Calcium bin 99.0 9.8E-06 2.1E-10 90.0 42.0 88 34-121 160-247 (546)
8 KOG0161 Myosin class II heavy 98.9 1E-05 2.2E-10 100.2 40.7 68 217-291 1076-1143(1930)
9 KOG0250 DNA repair protein RAD 98.9 7.7E-06 1.7E-10 95.6 35.9 223 89-324 276-498 (1074)
10 COG1196 Smc Chromosome segrega 98.9 2.2E-05 4.7E-10 94.9 40.2 239 38-290 246-498 (1163)
11 PRK02224 chromosome segregatio 98.9 2.6E-05 5.6E-10 91.1 39.6 42 173-214 511-552 (880)
12 PRK02224 chromosome segregatio 98.8 3.6E-05 7.9E-10 89.9 40.1 9 106-114 354-362 (880)
13 KOG0161 Myosin class II heavy 98.8 5.3E-05 1.2E-09 94.1 42.1 268 30-297 858-1142(1930)
14 PF00261 Tropomyosin: Tropomyo 98.8 7.2E-06 1.6E-10 82.5 29.1 179 86-264 28-209 (237)
15 COG1196 Smc Chromosome segrega 98.8 1.8E-05 3.9E-10 95.6 37.8 12 434-445 1118-1129(1163)
16 PF00261 Tropomyosin: Tropomyo 98.7 1.4E-05 3E-10 80.5 27.7 177 38-214 8-184 (237)
17 PF07888 CALCOCO1: Calcium bin 98.6 0.00029 6.4E-09 78.5 36.9 28 272-299 430-457 (546)
18 PRK03918 chromosome segregatio 98.6 0.00038 8.3E-09 81.2 39.3 92 171-262 612-704 (880)
19 PRK03918 chromosome segregatio 98.6 0.00051 1.1E-08 80.2 39.5 35 77-111 235-269 (880)
20 KOG0996 Structural maintenance 98.5 0.00051 1.1E-08 81.2 36.4 124 81-204 385-512 (1293)
21 TIGR00606 rad50 rad50. This fa 98.5 0.0015 3.2E-08 80.2 40.8 46 216-261 997-1044(1311)
22 PRK01156 chromosome segregatio 98.5 0.002 4.4E-08 75.8 40.5 11 494-504 801-811 (895)
23 KOG0250 DNA repair protein RAD 98.5 0.00093 2E-08 78.8 36.1 104 109-212 282-385 (1074)
24 TIGR00606 rad50 rad50. This fa 98.4 0.0015 3.3E-08 80.2 39.2 42 220-261 1050-1091(1311)
25 PF10174 Cast: RIM-binding pro 98.4 0.0014 3.1E-08 76.2 35.4 32 33-64 178-209 (775)
26 PF05483 SCP-1: Synaptonemal c 98.3 0.011 2.4E-07 67.2 38.9 204 90-293 488-698 (786)
27 PRK11637 AmiB activator; Provi 98.3 0.00084 1.8E-08 72.9 29.7 73 86-158 46-118 (428)
28 PHA02562 46 endonuclease subun 98.3 0.0038 8.3E-08 69.2 35.4 35 174-208 333-367 (562)
29 PF10174 Cast: RIM-binding pro 98.3 0.0075 1.6E-07 70.4 38.0 181 32-212 323-513 (775)
30 PRK11637 AmiB activator; Provi 98.3 0.001 2.2E-08 72.3 29.1 8 544-551 419-426 (428)
31 PHA02562 46 endonuclease subun 98.3 0.0019 4.2E-08 71.6 31.8 41 224-264 351-391 (562)
32 KOG0971 Microtubule-associated 98.2 0.019 4.2E-07 66.8 38.7 179 37-215 251-440 (1243)
33 KOG0963 Transcription factor/C 98.2 0.0056 1.2E-07 68.9 33.5 229 11-244 119-357 (629)
34 KOG4643 Uncharacterized coiled 98.2 0.009 1.9E-07 70.1 36.0 205 90-294 297-558 (1195)
35 COG1340 Uncharacterized archae 98.2 0.013 2.8E-07 61.1 34.0 58 59-116 20-77 (294)
36 KOG0964 Structural maintenance 98.2 0.011 2.3E-07 69.4 35.8 17 424-440 564-580 (1200)
37 PF05483 SCP-1: Synaptonemal c 98.2 0.026 5.7E-07 64.2 39.6 72 232-303 588-659 (786)
38 KOG0996 Structural maintenance 98.2 0.016 3.5E-07 69.1 37.7 37 105-141 388-424 (1293)
39 KOG4674 Uncharacterized conser 98.1 0.013 2.8E-07 72.9 37.4 149 117-268 907-1069(1822)
40 PF05701 WEMBL: Weak chloropla 98.1 0.028 6.1E-07 63.0 38.8 43 222-264 370-412 (522)
41 PRK04778 septation ring format 98.1 0.026 5.7E-07 63.8 37.6 214 82-296 277-512 (569)
42 KOG1029 Endocytic adaptor prot 98.1 0.035 7.6E-07 63.9 36.5 189 95-297 417-609 (1118)
43 PRK04863 mukB cell division pr 98.0 0.049 1.1E-06 67.9 39.6 31 28-58 304-334 (1486)
44 KOG0995 Centromere-associated 98.0 0.049 1.1E-06 61.1 35.2 193 72-264 258-472 (581)
45 PRK04778 septation ring format 98.0 0.038 8.2E-07 62.6 34.5 50 30-79 111-160 (569)
46 PF00038 Filament: Intermediat 97.9 0.036 7.8E-07 57.3 34.8 45 74-118 97-141 (312)
47 KOG0933 Structural maintenance 97.9 0.055 1.2E-06 63.9 35.3 80 218-297 393-472 (1174)
48 PF12128 DUF3584: Protein of u 97.9 0.089 1.9E-06 64.6 39.3 172 117-288 354-533 (1201)
49 KOG4643 Uncharacterized coiled 97.9 0.067 1.5E-06 63.2 35.7 68 88-155 395-462 (1195)
50 KOG4674 Uncharacterized conser 97.9 0.16 3.4E-06 63.8 40.6 195 97-291 280-493 (1822)
51 PF05701 WEMBL: Weak chloropla 97.9 0.085 1.8E-06 59.3 40.7 34 28-61 52-85 (522)
52 PRK04863 mukB cell division pr 97.9 0.084 1.8E-06 65.9 37.6 20 283-302 533-552 (1486)
53 KOG0977 Nuclear envelope prote 97.9 0.024 5.2E-07 63.6 30.0 81 49-129 110-190 (546)
54 PF15619 Lebercilin: Ciliary p 97.8 0.017 3.7E-07 57.1 25.7 167 109-296 20-187 (194)
55 PF12128 DUF3584: Protein of u 97.8 0.086 1.9E-06 64.7 36.9 11 394-404 937-947 (1201)
56 PF09730 BicD: Microtubule-ass 97.8 0.13 2.7E-06 59.9 37.3 72 23-94 19-90 (717)
57 KOG0933 Structural maintenance 97.8 0.07 1.5E-06 63.1 33.7 155 36-200 739-893 (1174)
58 COG1340 Uncharacterized archae 97.8 0.064 1.4E-06 56.1 34.3 44 31-74 27-70 (294)
59 KOG0995 Centromere-associated 97.8 0.072 1.6E-06 59.8 32.3 150 65-214 220-375 (581)
60 PF00038 Filament: Intermediat 97.8 0.066 1.4E-06 55.4 39.0 28 31-58 11-38 (312)
61 KOG0962 DNA repair protein RAD 97.7 0.088 1.9E-06 64.0 34.0 258 31-297 802-1079(1294)
62 KOG0612 Rho-associated, coiled 97.7 0.1 2.3E-06 62.7 33.7 27 30-56 507-533 (1317)
63 KOG0018 Structural maintenance 97.7 0.11 2.3E-06 62.0 33.1 121 30-150 226-352 (1141)
64 KOG0994 Extracellular matrix g 97.7 0.06 1.3E-06 64.2 30.7 180 81-264 1571-1750(1758)
65 KOG0976 Rho/Rac1-interacting s 97.7 0.069 1.5E-06 61.8 29.9 119 84-202 89-207 (1265)
66 PF05667 DUF812: Protein of un 97.6 0.1 2.3E-06 59.5 31.5 73 216-291 490-562 (594)
67 PF14662 CCDC155: Coiled-coil 97.6 0.063 1.4E-06 53.0 25.6 127 88-214 9-138 (193)
68 KOG0018 Structural maintenance 97.6 0.065 1.4E-06 63.7 29.8 79 60-138 677-755 (1141)
69 PF08317 Spc7: Spc7 kinetochor 97.6 0.07 1.5E-06 56.4 27.8 71 227-304 226-300 (325)
70 PF04849 HAP1_N: HAP1 N-termin 97.6 0.041 8.9E-07 57.9 25.4 194 92-295 88-305 (306)
71 KOG0964 Structural maintenance 97.6 0.31 6.6E-06 57.8 36.5 97 88-184 266-369 (1200)
72 KOG0971 Microtubule-associated 97.5 0.33 7.2E-06 57.1 39.2 182 47-229 278-474 (1243)
73 KOG0977 Nuclear envelope prote 97.5 0.13 2.7E-06 58.1 28.8 149 4-169 33-181 (546)
74 KOG1029 Endocytic adaptor prot 97.5 0.11 2.3E-06 60.1 28.1 14 366-379 683-696 (1118)
75 PF15619 Lebercilin: Ciliary p 97.5 0.096 2.1E-06 51.9 24.8 71 174-244 121-191 (194)
76 PF15070 GOLGA2L5: Putative go 97.4 0.38 8.3E-06 55.3 35.3 48 11-58 20-70 (617)
77 PF06160 EzrA: Septation ring 97.4 0.35 7.7E-06 54.8 35.0 54 30-83 107-160 (560)
78 COG4942 Membrane-bound metallo 97.4 0.29 6.2E-06 53.7 29.8 59 222-280 201-259 (420)
79 COG1579 Zn-ribbon protein, pos 97.4 0.064 1.4E-06 54.7 23.4 13 285-297 176-189 (239)
80 COG5185 HEC1 Protein involved 97.4 0.35 7.6E-06 53.4 29.7 157 42-202 268-427 (622)
81 KOG0612 Rho-associated, coiled 97.4 0.65 1.4E-05 56.3 37.0 65 88-152 575-639 (1317)
82 PF09726 Macoilin: Transmembra 97.3 0.18 3.9E-06 58.7 28.5 22 272-293 635-656 (697)
83 PF12718 Tropomyosin_1: Tropom 97.3 0.057 1.2E-06 50.9 20.2 56 99-154 12-67 (143)
84 PF12718 Tropomyosin_1: Tropom 97.3 0.03 6.5E-07 52.8 18.3 59 157-215 7-65 (143)
85 PF15070 GOLGA2L5: Putative go 97.3 0.56 1.2E-05 54.0 34.7 42 158-199 154-195 (617)
86 PF13851 GAS: Growth-arrest sp 97.3 0.24 5.1E-06 49.3 27.4 44 172-215 87-130 (201)
87 PF09789 DUF2353: Uncharacteri 97.3 0.16 3.4E-06 53.9 24.9 162 73-243 2-180 (319)
88 KOG1899 LAR transmembrane tyro 97.2 0.075 1.6E-06 60.1 23.0 42 351-393 335-377 (861)
89 PF09755 DUF2046: Uncharacteri 97.2 0.41 8.9E-06 50.5 32.9 71 222-302 227-297 (310)
90 PRK09039 hypothetical protein; 97.2 0.084 1.8E-06 56.4 22.5 48 78-125 44-91 (343)
91 KOG0980 Actin-binding protein 97.2 0.84 1.8E-05 53.8 31.5 134 146-279 413-553 (980)
92 KOG0994 Extracellular matrix g 97.1 1.1 2.3E-05 54.3 33.1 77 38-114 1422-1498(1758)
93 KOG0980 Actin-binding protein 97.1 0.94 2E-05 53.4 32.4 181 16-200 343-523 (980)
94 PF06160 EzrA: Septation ring 97.1 0.77 1.7E-05 52.2 37.9 207 85-291 276-504 (560)
95 TIGR03185 DNA_S_dndD DNA sulfu 97.1 0.87 1.9E-05 52.4 37.2 15 408-424 573-587 (650)
96 PRK09039 hypothetical protein; 97.1 0.084 1.8E-06 56.4 21.3 12 320-331 223-234 (343)
97 KOG0978 E3 ubiquitin ligase in 97.1 0.93 2E-05 52.6 37.7 125 170-294 495-622 (698)
98 TIGR03185 DNA_S_dndD DNA sulfu 97.1 0.9 1.9E-05 52.3 31.4 47 69-115 205-251 (650)
99 KOG0976 Rho/Rac1-interacting s 97.1 1 2.2E-05 52.7 37.0 41 77-117 166-206 (1265)
100 KOG4673 Transcription factor T 97.1 0.94 2E-05 52.2 37.2 46 252-297 704-749 (961)
101 COG0419 SbcC ATPase involved i 97.0 1.2 2.6E-05 53.2 40.4 14 284-297 699-712 (908)
102 TIGR02680 conserved hypothetic 97.0 1.4 3E-05 55.1 34.0 226 39-264 736-968 (1353)
103 KOG4593 Mitotic checkpoint pro 97.0 1.1 2.3E-05 51.8 36.9 109 30-138 100-209 (716)
104 PF09726 Macoilin: Transmembra 97.0 1 2.3E-05 52.5 30.2 26 272-297 628-653 (697)
105 PF14662 CCDC155: Coiled-coil 97.0 0.46 1E-05 47.0 25.7 112 101-212 8-122 (193)
106 KOG1003 Actin filament-coating 96.9 0.49 1.1E-05 47.0 25.6 62 224-292 137-198 (205)
107 PF15066 CAGE1: Cancer-associa 96.9 0.89 1.9E-05 50.3 27.3 78 3-80 300-380 (527)
108 PF08317 Spc7: Spc7 kinetochor 96.9 0.69 1.5E-05 49.0 26.1 117 92-212 133-250 (325)
109 PF01576 Myosin_tail_1: Myosin 96.9 0.00025 5.3E-09 83.6 0.0 65 77-141 212-276 (859)
110 COG4942 Membrane-bound metallo 96.9 1 2.3E-05 49.4 29.8 40 220-259 213-252 (420)
111 KOG0963 Transcription factor/C 96.8 1.3 2.9E-05 50.5 36.3 22 30-51 58-79 (629)
112 PF09730 BicD: Microtubule-ass 96.8 1.6 3.6E-05 51.0 34.6 91 35-125 24-114 (717)
113 PF04849 HAP1_N: HAP1 N-termin 96.8 0.83 1.8E-05 48.3 25.1 24 105-128 164-187 (306)
114 PF10473 CENP-F_leu_zip: Leuci 96.8 0.36 7.7E-06 45.7 20.3 73 91-163 7-79 (140)
115 KOG0962 DNA repair protein RAD 96.7 2 4.4E-05 52.8 30.6 235 30-264 629-925 (1294)
116 KOG0946 ER-Golgi vesicle-tethe 96.7 1.5 3.2E-05 51.5 28.1 25 187-211 801-825 (970)
117 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.7 0.36 7.8E-06 44.6 19.4 67 170-236 58-124 (132)
118 TIGR00634 recN DNA repair prot 96.6 1.5 3.4E-05 49.6 27.8 219 71-302 159-397 (563)
119 PRK10929 putative mechanosensi 96.6 2.9 6.2E-05 51.3 31.8 16 406-421 507-522 (1109)
120 PF01576 Myosin_tail_1: Myosin 96.6 0.00057 1.2E-08 80.6 0.0 42 258-299 524-565 (859)
121 PF10473 CENP-F_leu_zip: Leuci 96.6 0.55 1.2E-05 44.4 19.8 90 91-180 21-110 (140)
122 COG0419 SbcC ATPase involved i 96.5 2.8 6.1E-05 50.2 39.7 77 219-295 370-446 (908)
123 PRK11281 hypothetical protein; 96.5 2.6 5.6E-05 51.7 29.9 43 222-264 290-332 (1113)
124 KOG0946 ER-Golgi vesicle-tethe 96.5 2.7 5.9E-05 49.4 28.3 39 159-197 801-839 (970)
125 KOG0999 Microtubule-associated 96.5 2.2 4.8E-05 48.3 31.0 164 37-207 7-178 (772)
126 TIGR01843 type_I_hlyD type I s 96.5 0.95 2.1E-05 48.1 23.6 26 175-200 200-225 (423)
127 TIGR03007 pepcterm_ChnLen poly 96.5 0.49 1.1E-05 52.2 22.0 26 272-297 354-379 (498)
128 COG3883 Uncharacterized protei 96.4 0.81 1.8E-05 47.5 21.6 8 44-51 37-44 (265)
129 TIGR02680 conserved hypothetic 96.4 3.3 7.1E-05 51.9 30.4 38 86-123 741-778 (1353)
130 PF05010 TACC: Transforming ac 96.3 1.4 3E-05 44.3 28.7 33 108-140 23-55 (207)
131 KOG0979 Structural maintenance 96.3 3.9 8.4E-05 49.2 28.7 237 66-302 629-921 (1072)
132 KOG1937 Uncharacterized conser 96.3 2.5 5.4E-05 46.8 25.5 84 45-128 345-430 (521)
133 PF05557 MAD: Mitotic checkpoi 96.3 0.0011 2.4E-08 76.7 0.0 112 153-264 260-390 (722)
134 KOG0978 E3 ubiquitin ligase in 96.2 3.6 7.8E-05 48.0 35.8 126 155-280 494-622 (698)
135 PF05911 DUF869: Plant protein 96.2 4.2 9E-05 48.2 29.5 28 266-293 733-760 (769)
136 KOG4593 Mitotic checkpoint pro 96.1 3.7 8E-05 47.6 38.0 66 21-86 141-213 (716)
137 smart00787 Spc7 Spc7 kinetocho 96.1 2.4 5.2E-05 45.0 28.6 81 216-303 210-294 (312)
138 PF06008 Laminin_I: Laminin Do 96.1 2 4.3E-05 44.0 28.7 195 38-243 17-211 (264)
139 TIGR01005 eps_transp_fam exopo 96.0 4.4 9.5E-05 47.4 28.3 26 272-297 375-400 (754)
140 TIGR03007 pepcterm_ChnLen poly 96.0 2.2 4.7E-05 47.2 24.3 9 363-371 439-447 (498)
141 COG4372 Uncharacterized protei 96.0 3.1 6.8E-05 45.3 32.1 208 77-291 64-277 (499)
142 PF10168 Nup88: Nuclear pore c 95.9 0.41 8.9E-06 56.0 18.8 42 100-141 578-619 (717)
143 KOG1003 Actin filament-coating 95.9 2 4.4E-05 42.8 25.5 75 170-244 108-192 (205)
144 PF04012 PspA_IM30: PspA/IM30 95.9 1.8 4E-05 42.8 20.6 114 170-290 29-150 (221)
145 KOG4360 Uncharacterized coiled 95.8 1.1 2.4E-05 50.1 19.9 174 91-264 87-294 (596)
146 TIGR03017 EpsF chain length de 95.7 3 6.4E-05 45.3 23.4 26 272-297 341-366 (444)
147 COG3883 Uncharacterized protei 95.7 3.2 6.9E-05 43.2 25.4 63 82-144 33-95 (265)
148 TIGR01005 eps_transp_fam exopo 95.7 3.3 7.1E-05 48.4 24.8 8 541-548 742-749 (754)
149 PRK11281 hypothetical protein; 95.6 8.4 0.00018 47.5 31.6 16 407-422 530-545 (1113)
150 PF05667 DUF812: Protein of un 95.6 6 0.00013 45.6 34.4 11 281-291 579-589 (594)
151 KOG0249 LAR-interacting protei 95.5 1.7 3.7E-05 50.4 20.9 49 216-264 208-256 (916)
152 PF13166 AAA_13: AAA domain 95.5 6.4 0.00014 45.4 26.8 58 238-302 417-477 (712)
153 KOG0979 Structural maintenance 95.5 8.5 0.00018 46.4 28.1 25 85-109 200-224 (1072)
154 KOG2991 Splicing regulator [RN 95.4 3.5 7.5E-05 42.8 20.7 50 215-264 255-304 (330)
155 KOG4438 Centromere-associated 95.4 5.6 0.00012 43.9 36.4 193 13-212 127-333 (446)
156 PF13514 AAA_27: AAA domain 95.4 9.9 0.00022 46.7 38.2 47 218-264 897-945 (1111)
157 PF09789 DUF2353: Uncharacteri 95.3 4.9 0.00011 42.9 22.6 98 102-199 66-168 (319)
158 PRK10869 recombination and rep 95.3 7.1 0.00015 44.5 29.0 54 248-301 337-391 (553)
159 PF12325 TMF_TATA_bd: TATA ele 95.2 1 2.2E-05 41.6 15.0 93 89-199 18-110 (120)
160 PRK10246 exonuclease subunit S 95.2 11 0.00023 46.3 32.8 26 272-297 866-891 (1047)
161 KOG1853 LIS1-interacting prote 95.2 4.5 9.8E-05 41.9 26.0 51 80-130 27-81 (333)
162 PF06008 Laminin_I: Laminin Do 95.2 4.3 9.2E-05 41.6 28.9 90 80-169 24-113 (264)
163 TIGR02977 phageshock_pspA phag 95.2 3.9 8.4E-05 41.0 20.6 112 173-291 33-152 (219)
164 PF05622 HOOK: HOOK protein; 95.2 0.0055 1.2E-07 70.9 0.0 17 38-54 267-283 (713)
165 PF10168 Nup88: Nuclear pore c 95.2 3 6.6E-05 49.0 22.1 17 272-288 698-714 (717)
166 PF05557 MAD: Mitotic checkpoi 95.1 0.0056 1.2E-07 70.9 0.0 17 35-51 111-127 (722)
167 KOG1853 LIS1-interacting prote 95.1 4.8 0.0001 41.7 22.1 30 173-202 93-122 (333)
168 TIGR00634 recN DNA repair prot 95.1 7.9 0.00017 43.9 25.9 46 96-141 156-201 (563)
169 PF09728 Taxilin: Myosin-like 95.1 5.7 0.00012 42.1 34.2 59 32-90 30-91 (309)
170 KOG0999 Microtubule-associated 95.0 8.2 0.00018 43.9 26.5 28 478-505 480-507 (772)
171 PF09787 Golgin_A5: Golgin sub 95.0 7.9 0.00017 43.6 30.3 16 40-55 157-172 (511)
172 PF15066 CAGE1: Cancer-associa 95.0 7.6 0.00017 43.3 27.7 77 104-180 358-434 (527)
173 PLN03229 acetyl-coenzyme A car 94.9 10 0.00022 44.6 25.0 32 43-74 460-491 (762)
174 PF08614 ATG16: Autophagy prot 94.9 0.15 3.2E-06 50.0 9.3 104 161-264 78-184 (194)
175 PF05010 TACC: Transforming ac 94.9 4.9 0.00011 40.5 28.2 12 85-96 42-53 (207)
176 PF09728 Taxilin: Myosin-like 94.8 6.5 0.00014 41.7 36.5 53 216-268 222-274 (309)
177 PF05911 DUF869: Plant protein 94.8 11 0.00025 44.6 25.3 73 216-288 133-205 (769)
178 KOG4673 Transcription factor T 94.7 11 0.00024 43.9 37.4 11 291-301 692-702 (961)
179 KOG0249 LAR-interacting protei 94.7 12 0.00025 43.9 25.0 203 5-212 41-264 (916)
180 PF06818 Fez1: Fez1; InterPro 94.7 4.1 8.9E-05 40.9 18.5 94 103-196 12-105 (202)
181 PF05622 HOOK: HOOK protein; 94.7 0.009 1.9E-07 69.2 0.0 20 251-270 575-594 (713)
182 smart00787 Spc7 Spc7 kinetocho 94.6 7.3 0.00016 41.4 28.5 65 148-212 177-245 (312)
183 PF04111 APG6: Autophagy prote 94.6 0.75 1.6E-05 48.7 14.1 13 288-300 181-193 (314)
184 PF06785 UPF0242: Uncharacteri 94.5 3.8 8.1E-05 43.9 18.7 115 73-201 71-185 (401)
185 PF13851 GAS: Growth-arrest sp 94.5 5.6 0.00012 39.6 27.3 13 39-51 28-40 (201)
186 PF04912 Dynamitin: Dynamitin 94.5 8.6 0.00019 41.7 25.9 23 35-57 91-113 (388)
187 PF12325 TMF_TATA_bd: TATA ele 94.5 1.4 3E-05 40.7 13.8 17 272-291 102-118 (120)
188 PF11559 ADIP: Afadin- and alp 94.5 3.9 8.5E-05 38.3 17.3 58 89-146 54-111 (151)
189 PF10146 zf-C4H2: Zinc finger- 94.5 1.1 2.4E-05 45.6 14.4 29 272-300 80-109 (230)
190 PF08614 ATG16: Autophagy prot 94.4 0.4 8.7E-06 47.0 10.8 106 173-285 69-177 (194)
191 PF12795 MscS_porin: Mechanose 94.3 6.7 0.00014 39.6 24.2 27 238-264 185-211 (240)
192 KOG1850 Myosin-like coiled-coi 94.0 10 0.00022 40.6 37.0 33 363-395 350-382 (391)
193 PF04111 APG6: Autophagy prote 94.0 1.1 2.3E-05 47.5 13.8 34 170-203 98-131 (314)
194 PRK10698 phage shock protein P 94.0 7.7 0.00017 39.2 20.8 121 173-300 33-161 (222)
195 PF10498 IFT57: Intra-flagella 94.0 2.1 4.6E-05 46.3 16.1 132 65-200 226-357 (359)
196 PF12795 MscS_porin: Mechanose 93.9 8.1 0.00017 39.0 23.3 9 106-114 43-51 (240)
197 PRK10929 putative mechanosensi 93.9 22 0.00047 44.0 33.2 57 170-226 186-243 (1109)
198 KOG4438 Centromere-associated 93.9 13 0.00028 41.2 29.6 40 62-101 127-166 (446)
199 PF14915 CCDC144C: CCDC144C pr 93.9 10 0.00022 40.1 33.2 29 186-214 138-166 (305)
200 PF10186 Atg14: UV radiation r 93.9 8.4 0.00018 39.1 20.3 10 334-343 199-208 (302)
201 COG1842 PspA Phage shock prote 93.8 8.6 0.00019 39.1 19.5 113 172-291 32-152 (225)
202 COG4372 Uncharacterized protei 93.8 12 0.00027 40.9 30.5 47 95-141 110-156 (499)
203 KOG0804 Cytoplasmic Zn-finger 93.7 4.3 9.4E-05 45.0 17.7 83 37-136 327-410 (493)
204 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.7 5.8 0.00013 36.7 19.5 40 80-119 10-49 (132)
205 PF14915 CCDC144C: CCDC144C pr 93.6 11 0.00025 39.8 37.0 217 67-290 43-295 (305)
206 KOG1899 LAR transmembrane tyro 93.6 4.4 9.6E-05 46.5 18.0 44 230-273 216-259 (861)
207 PF13870 DUF4201: Domain of un 93.6 7.4 0.00016 37.5 21.6 22 41-62 45-66 (177)
208 PF00769 ERM: Ezrin/radixin/mo 93.5 5.6 0.00012 40.8 17.5 94 65-162 8-101 (246)
209 PF10481 CENP-F_N: Cenp-F N-te 93.2 13 0.00027 39.1 19.8 93 35-141 15-107 (307)
210 KOG1937 Uncharacterized conser 93.2 17 0.00037 40.6 27.9 69 223-291 388-460 (521)
211 PF06818 Fez1: Fez1; InterPro 93.1 11 0.00023 38.0 21.0 20 217-236 170-189 (202)
212 PF10481 CENP-F_N: Cenp-F N-te 93.0 13 0.00028 39.1 19.0 6 280-285 183-188 (307)
213 TIGR03017 EpsF chain length de 92.8 17 0.00037 39.5 26.0 22 272-293 348-369 (444)
214 KOG0982 Centrosomal protein Nu 92.7 19 0.00042 39.9 22.5 43 173-215 299-341 (502)
215 PRK10246 exonuclease subunit S 92.6 32 0.00069 42.3 39.0 12 410-421 974-985 (1047)
216 PF00769 ERM: Ezrin/radixin/mo 92.6 9.6 0.00021 39.1 17.7 87 101-187 5-91 (246)
217 TIGR01000 bacteriocin_acc bact 92.6 20 0.00042 39.6 23.1 26 272-297 290-315 (457)
218 PF09787 Golgin_A5: Golgin sub 92.6 22 0.00047 40.2 33.8 59 90-149 183-241 (511)
219 PLN03229 acetyl-coenzyme A car 92.5 22 0.00048 42.0 22.0 41 32-72 490-538 (762)
220 KOG0243 Kinesin-like protein [ 92.4 33 0.00073 41.9 29.6 134 82-215 443-576 (1041)
221 PF10498 IFT57: Intra-flagella 92.1 6.6 0.00014 42.6 16.5 122 170-298 219-353 (359)
222 KOG4302 Microtubule-associated 92.0 9.9 0.00021 44.3 18.5 84 216-306 109-207 (660)
223 PRK15422 septal ring assembly 91.8 2.6 5.6E-05 36.3 10.3 63 89-151 6-68 (79)
224 PF09755 DUF2046: Uncharacteri 91.5 22 0.00048 37.9 33.1 15 67-81 78-92 (310)
225 PF15397 DUF4618: Domain of un 91.4 20 0.00044 37.3 27.8 32 272-304 199-230 (258)
226 TIGR01000 bacteriocin_acc bact 91.4 26 0.00057 38.6 23.8 20 272-291 297-316 (457)
227 KOG0239 Kinesin (KAR3 subfamil 91.3 11 0.00023 44.2 18.2 35 270-304 297-331 (670)
228 COG3074 Uncharacterized protei 91.3 2.9 6.3E-05 35.3 9.8 72 219-297 6-77 (79)
229 PF13514 AAA_27: AAA domain 91.2 46 0.00099 41.1 37.1 58 61-118 654-711 (1111)
230 PF04912 Dynamitin: Dynamitin 90.6 16 0.00035 39.6 17.7 98 36-141 207-307 (388)
231 COG2433 Uncharacterized conser 90.4 4.8 0.0001 46.2 13.7 21 284-304 528-548 (652)
232 PF13166 AAA_13: AAA domain 90.3 40 0.00087 39.0 26.3 12 319-330 527-538 (712)
233 PRK15422 septal ring assembly 90.3 3.4 7.5E-05 35.6 9.7 72 219-297 6-77 (79)
234 COG4026 Uncharacterized protei 89.9 5.8 0.00013 40.5 12.4 41 65-105 110-153 (290)
235 KOG0982 Centrosomal protein Nu 89.6 39 0.00084 37.6 24.1 76 124-199 277-353 (502)
236 PF04012 PspA_IM30: PspA/IM30 89.5 23 0.0005 35.0 22.0 85 79-163 29-118 (221)
237 COG2433 Uncharacterized conser 89.5 7.2 0.00016 44.8 14.2 26 173-198 476-501 (652)
238 PF09304 Cortex-I_coil: Cortex 89.5 16 0.00035 33.2 15.5 42 167-208 54-95 (107)
239 KOG0965 Predicted RNA-binding 89.5 0.078 1.7E-06 61.0 -1.0 153 7-166 58-216 (988)
240 PF05384 DegS: Sensor protein 89.5 21 0.00046 34.5 20.6 115 150-264 6-124 (159)
241 PF10146 zf-C4H2: Zinc finger- 89.4 17 0.00038 37.1 15.8 53 155-207 51-103 (230)
242 COG3074 Uncharacterized protei 89.3 6.5 0.00014 33.3 10.3 61 89-149 6-66 (79)
243 PF06705 SF-assemblin: SF-asse 89.3 27 0.00058 35.5 32.5 48 230-277 174-222 (247)
244 cd07648 F-BAR_FCHO The F-BAR ( 89.3 27 0.00059 35.5 26.6 38 59-96 12-49 (261)
245 KOG4302 Microtubule-associated 89.1 52 0.0011 38.6 24.9 132 49-180 43-197 (660)
246 PLN03188 kinesin-12 family pro 89.1 71 0.0015 40.0 33.0 136 151-297 1094-1242(1320)
247 PF10267 Tmemb_cc2: Predicted 89.0 17 0.00037 40.0 16.3 42 150-191 276-318 (395)
248 PF03962 Mnd1: Mnd1 family; I 88.9 18 0.00039 35.7 15.1 115 170-302 61-175 (188)
249 PF09304 Cortex-I_coil: Cortex 88.6 19 0.00041 32.8 14.5 30 162-191 42-71 (107)
250 COG4477 EzrA Negative regulato 88.6 51 0.0011 37.7 32.9 62 38-99 118-183 (570)
251 KOG4809 Rab6 GTPase-interactin 88.5 52 0.0011 37.8 31.6 123 45-167 313-452 (654)
252 KOG4403 Cell surface glycoprot 88.4 26 0.00057 38.9 17.0 36 76-111 255-290 (575)
253 KOG0992 Uncharacterized conser 88.4 51 0.0011 37.5 33.7 38 44-84 126-166 (613)
254 PRK09841 cryptic autophosphory 88.2 33 0.00072 40.3 19.2 26 272-297 369-394 (726)
255 KOG4657 Uncharacterized conser 88.2 33 0.00072 35.1 17.9 134 158-303 23-165 (246)
256 KOG3091 Nuclear pore complex, 87.6 30 0.00065 39.0 17.1 68 145-212 336-403 (508)
257 KOG0240 Kinesin (SMY1 subfamil 87.6 60 0.0013 37.4 20.0 30 110-139 343-372 (607)
258 PRK09841 cryptic autophosphory 87.6 15 0.00033 43.1 15.9 28 216-243 369-396 (726)
259 PF15397 DUF4618: Domain of un 87.5 39 0.00085 35.2 30.7 61 65-128 47-108 (258)
260 PF06785 UPF0242: Uncharacteri 87.2 48 0.001 35.9 19.5 125 149-283 91-218 (401)
261 PRK10869 recombination and rep 87.2 61 0.0013 37.1 27.5 47 70-116 154-200 (553)
262 PRK09343 prefoldin subunit bet 87.2 23 0.0005 32.5 13.7 45 70-114 4-48 (121)
263 KOG0239 Kinesin (KAR3 subfamil 87.1 70 0.0015 37.7 20.8 25 39-63 108-132 (670)
264 KOG2129 Uncharacterized conser 87.1 55 0.0012 36.4 25.8 41 174-214 182-223 (552)
265 COG1382 GimC Prefoldin, chaper 87.1 16 0.00035 33.9 12.4 93 159-255 8-108 (119)
266 PF06005 DUF904: Protein of un 87.0 7.9 0.00017 32.7 9.7 64 220-297 7-70 (72)
267 PRK11519 tyrosine kinase; Prov 87.0 21 0.00045 41.9 16.6 21 111-131 270-290 (719)
268 PF14992 TMCO5: TMCO5 family 87.0 27 0.00059 36.7 15.6 39 80-118 56-94 (280)
269 PF05384 DegS: Sensor protein 86.9 31 0.00068 33.4 21.5 28 227-254 122-149 (159)
270 PF10234 Cluap1: Clusterin-ass 86.7 44 0.00096 35.0 18.5 57 172-228 191-247 (267)
271 KOG0804 Cytoplasmic Zn-finger 86.7 42 0.00091 37.6 17.4 53 110-162 349-401 (493)
272 PF07111 HCR: Alpha helical co 85.9 81 0.0018 37.2 36.8 61 79-139 379-439 (739)
273 KOG4360 Uncharacterized coiled 85.8 70 0.0015 36.4 22.8 170 80-249 219-424 (596)
274 PF05266 DUF724: Protein of un 85.6 33 0.00071 34.1 14.8 93 65-158 89-181 (190)
275 COG4026 Uncharacterized protei 85.6 9.8 0.00021 38.9 11.1 11 64-74 71-81 (290)
276 PRK11519 tyrosine kinase; Prov 85.5 66 0.0014 37.9 19.6 36 132-167 263-298 (719)
277 KOG3091 Nuclear pore complex, 85.2 42 0.0009 38.0 16.7 74 96-169 350-423 (508)
278 PF09738 DUF2051: Double stran 85.2 22 0.00047 37.8 14.1 58 103-160 79-136 (302)
279 PF05278 PEARLI-4: Arabidopsis 85.0 54 0.0012 34.4 16.7 107 30-144 148-257 (269)
280 KOG2129 Uncharacterized conser 84.9 70 0.0015 35.6 26.5 37 360-396 356-397 (552)
281 PLN02939 transferase, transfer 84.9 1.1E+02 0.0023 37.7 22.6 28 89-116 158-185 (977)
282 COG4477 EzrA Negative regulato 84.8 80 0.0017 36.2 32.5 96 119-214 313-418 (570)
283 PF06005 DUF904: Protein of un 84.7 18 0.0004 30.5 10.8 39 89-127 6-44 (72)
284 PF08647 BRE1: BRE1 E3 ubiquit 84.7 25 0.00053 31.0 12.1 66 150-215 3-68 (96)
285 PF15233 SYCE1: Synaptonemal c 84.7 34 0.00075 32.2 13.4 68 102-169 7-74 (134)
286 COG4717 Uncharacterized conser 84.1 1.1E+02 0.0023 37.1 34.7 231 30-264 570-830 (984)
287 PF12777 MT: Microtubule-bindi 83.8 66 0.0014 34.4 24.2 89 176-264 219-310 (344)
288 TIGR02338 gimC_beta prefoldin, 83.2 32 0.0007 30.8 12.5 27 78-104 8-34 (110)
289 TIGR01010 BexC_CtrB_KpsE polys 83.2 39 0.00085 36.0 15.3 22 272-293 284-305 (362)
290 KOG2991 Splicing regulator [RN 83.2 64 0.0014 33.8 21.5 47 251-297 263-309 (330)
291 PF11932 DUF3450: Protein of u 82.4 51 0.0011 33.5 15.1 59 104-162 38-96 (251)
292 PF13870 DUF4201: Domain of un 82.3 49 0.0011 31.9 23.4 23 222-244 150-172 (177)
293 PRK15178 Vi polysaccharide exp 82.3 74 0.0016 35.6 17.2 58 142-199 248-307 (434)
294 KOG3433 Protein involved in me 82.2 37 0.0008 33.8 13.2 69 228-302 120-188 (203)
295 PF11932 DUF3450: Protein of u 82.1 62 0.0013 32.9 19.5 25 91-115 46-70 (251)
296 PF13863 DUF4200: Domain of un 82.1 38 0.00082 30.4 16.9 41 246-293 75-115 (126)
297 PF04949 Transcrip_act: Transc 81.8 52 0.0011 31.8 17.8 88 116-203 53-144 (159)
298 PF07111 HCR: Alpha helical co 81.4 1.2E+02 0.0026 35.8 36.8 128 182-309 328-458 (739)
299 PF04582 Reo_sigmaC: Reovirus 81.0 2.8 6.2E-05 44.7 5.6 86 108-193 35-120 (326)
300 PF03962 Mnd1: Mnd1 family; I 81.0 55 0.0012 32.3 14.3 32 82-113 64-95 (188)
301 PF07889 DUF1664: Protein of u 80.9 39 0.00085 31.6 12.4 55 134-188 66-120 (126)
302 PF10212 TTKRSYEDQ: Predicted 80.7 1.1E+02 0.0024 34.9 22.2 96 170-286 419-514 (518)
303 PF09738 DUF2051: Double stran 80.2 24 0.00051 37.6 12.1 24 272-299 153-176 (302)
304 PF11570 E2R135: Coiled-coil r 79.0 59 0.0013 30.7 12.9 96 111-206 4-112 (136)
305 PF14992 TMCO5: TMCO5 family 79.0 72 0.0016 33.7 14.9 16 170-185 83-98 (280)
306 PF12761 End3: Actin cytoskele 78.5 8.8 0.00019 38.4 7.8 90 39-128 104-194 (195)
307 PF12777 MT: Microtubule-bindi 78.0 9.3 0.0002 40.8 8.5 76 65-140 206-281 (344)
308 COG1842 PspA Phage shock prote 77.8 86 0.0019 32.0 20.9 42 80-121 31-72 (225)
309 TIGR02231 conserved hypothetic 77.5 27 0.00059 39.3 12.3 39 167-205 134-172 (525)
310 PF15254 CCDC14: Coiled-coil d 77.4 1.7E+02 0.0036 35.1 26.7 16 38-53 334-349 (861)
311 PRK09343 prefoldin subunit bet 77.1 40 0.00087 30.9 11.2 43 216-258 70-112 (121)
312 COG5185 HEC1 Protein involved 77.0 1.4E+02 0.003 33.9 35.7 62 57-118 296-361 (622)
313 TIGR02449 conserved hypothetic 77.0 16 0.00034 30.5 7.6 56 219-281 2-57 (65)
314 PF10267 Tmemb_cc2: Predicted 76.9 86 0.0019 34.7 15.5 43 202-244 272-318 (395)
315 PF06705 SF-assemblin: SF-asse 76.8 90 0.002 31.7 28.8 15 39-53 6-20 (247)
316 TIGR03319 YmdA_YtgF conserved 76.0 1.5E+02 0.0032 33.8 22.3 7 420-426 441-447 (514)
317 PRK10361 DNA recombination pro 75.8 1.5E+02 0.0032 33.7 25.4 61 184-244 98-160 (475)
318 KOG2751 Beclin-like protein [S 75.7 97 0.0021 34.6 15.3 68 134-201 195-262 (447)
319 PRK10698 phage shock protein P 75.7 95 0.0021 31.4 24.0 43 81-123 32-74 (222)
320 PF02994 Transposase_22: L1 tr 75.6 9.6 0.00021 41.3 7.8 45 164-208 144-188 (370)
321 TIGR02231 conserved hypothetic 75.5 34 0.00074 38.5 12.4 32 110-141 73-104 (525)
322 TIGR03752 conj_TIGR03752 integ 75.2 33 0.00072 38.6 11.9 49 93-141 58-106 (472)
323 PF15294 Leu_zip: Leucine zipp 75.0 1.2E+02 0.0026 32.1 15.6 146 92-248 130-277 (278)
324 COG3352 FlaC Putative archaeal 74.4 77 0.0017 30.7 12.5 76 66-141 2-84 (157)
325 PF06120 Phage_HK97_TLTM: Tail 73.7 1.3E+02 0.0029 32.1 19.7 6 320-325 220-225 (301)
326 COG3206 GumC Uncharacterized p 72.9 1.6E+02 0.0034 32.6 24.5 31 272-302 379-409 (458)
327 PF15290 Syntaphilin: Golgi-lo 72.8 1.3E+02 0.0029 31.8 15.5 23 152-174 119-141 (305)
328 PF05276 SH3BP5: SH3 domain-bi 72.7 1.2E+02 0.0026 31.3 27.6 92 173-264 123-224 (239)
329 PF05278 PEARLI-4: Arabidopsis 72.7 1.3E+02 0.0029 31.6 16.8 35 149-183 213-247 (269)
330 PF12329 TMF_DNA_bd: TATA elem 72.6 56 0.0012 27.6 10.1 15 52-66 5-19 (74)
331 PRK10361 DNA recombination pro 71.9 1.8E+02 0.004 33.0 25.8 25 288-312 209-234 (475)
332 PF10205 KLRAQ: Predicted coil 71.8 68 0.0015 29.1 10.9 58 80-137 12-69 (102)
333 KOG4677 Golgi integral membran 70.8 1.9E+02 0.0041 32.7 30.9 19 312-330 480-499 (554)
334 PF05266 DUF724: Protein of un 70.6 1.2E+02 0.0025 30.2 16.4 71 76-146 113-183 (190)
335 PF02403 Seryl_tRNA_N: Seryl-t 70.4 51 0.0011 29.0 10.0 67 224-297 36-105 (108)
336 KOG4637 Adaptor for phosphoino 70.2 1.8E+02 0.0039 32.2 16.5 63 216-281 215-277 (464)
337 cd00890 Prefoldin Prefoldin is 70.0 34 0.00073 30.6 8.9 40 161-200 3-42 (129)
338 PF03999 MAP65_ASE1: Microtubu 70.0 30 0.00065 40.0 10.5 97 38-141 142-240 (619)
339 PF14073 Cep57_CLD: Centrosome 69.7 1.2E+02 0.0026 30.1 21.8 16 36-51 2-17 (178)
340 PF07106 TBPIP: Tat binding pr 69.1 61 0.0013 30.9 10.9 23 89-111 81-103 (169)
341 PRK00295 hypothetical protein; 69.1 32 0.00069 28.6 7.8 50 237-293 4-53 (68)
342 KOG2264 Exostosin EXT1L [Signa 68.5 36 0.00078 39.2 10.2 43 108-150 93-135 (907)
343 KOG0243 Kinesin-like protein [ 68.4 3E+02 0.0066 34.1 35.2 112 30-141 433-558 (1041)
344 PF04065 Not3: Not1 N-terminal 68.3 1.5E+02 0.0032 30.5 15.5 174 50-243 6-209 (233)
345 PF05700 BCAS2: Breast carcino 67.3 1.4E+02 0.0031 30.0 15.6 24 220-243 185-208 (221)
346 PF15254 CCDC14: Coiled-coil d 67.0 2.9E+02 0.0062 33.3 24.8 142 170-320 433-588 (861)
347 PF10234 Cluap1: Clusterin-ass 66.5 1.8E+02 0.0038 30.7 18.6 6 46-51 115-120 (267)
348 PF04102 SlyX: SlyX; InterPro 66.1 31 0.00068 28.6 7.2 47 95-141 5-51 (69)
349 PF06428 Sec2p: GDP/GTP exchan 66.0 9.5 0.00021 34.2 4.3 81 124-204 3-84 (100)
350 KOG0247 Kinesin-like protein [ 65.2 1.5E+02 0.0033 35.3 14.6 74 63-141 487-560 (809)
351 PF01920 Prefoldin_2: Prefoldi 64.8 91 0.002 26.8 12.2 15 148-162 67-81 (106)
352 PF10212 TTKRSYEDQ: Predicted 64.5 2.7E+02 0.0058 32.0 22.8 76 168-243 438-513 (518)
353 cd07673 F-BAR_FCHO2 The F-BAR 64.3 1.8E+02 0.004 30.1 26.8 34 61-94 21-54 (269)
354 PF07889 DUF1664: Protein of u 64.1 1.3E+02 0.0028 28.2 13.0 53 150-202 68-120 (126)
355 COG0497 RecN ATPase involved i 63.9 2.8E+02 0.0061 32.1 24.3 43 74-116 158-200 (557)
356 PF04100 Vps53_N: Vps53-like, 63.8 2.3E+02 0.005 31.0 17.7 85 149-233 56-147 (383)
357 PF04102 SlyX: SlyX; InterPro 63.7 37 0.0008 28.2 7.2 22 103-124 6-27 (69)
358 cd07651 F-BAR_PombeCdc15_like 63.6 1.7E+02 0.0036 29.4 21.2 36 253-295 151-186 (236)
359 PRK04325 hypothetical protein; 63.3 46 0.00099 28.2 7.7 16 36-51 7-22 (74)
360 KOG0240 Kinesin (SMY1 subfamil 63.2 2.9E+02 0.0064 32.1 23.1 19 284-302 539-557 (607)
361 KOG2751 Beclin-like protein [S 63.2 2.6E+02 0.0056 31.4 15.7 13 290-302 316-328 (447)
362 COG5124 Protein predicted to b 63.0 74 0.0016 31.7 10.0 27 276-302 166-192 (209)
363 PRK02793 phi X174 lysis protei 62.8 48 0.001 27.9 7.7 16 36-51 6-21 (72)
364 COG1382 GimC Prefoldin, chaper 62.8 1.3E+02 0.0029 28.0 13.2 41 157-197 70-110 (119)
365 PRK04406 hypothetical protein; 62.8 62 0.0013 27.6 8.4 45 92-136 9-53 (75)
366 PF15456 Uds1: Up-regulated Du 62.7 1.3E+02 0.0029 27.9 13.3 59 127-185 47-116 (124)
367 KOG4603 TBP-1 interacting prot 62.4 1.7E+02 0.0037 29.1 14.3 57 75-131 81-139 (201)
368 PF07083 DUF1351: Protein of u 62.3 1.8E+02 0.0039 29.3 18.4 57 243-306 135-191 (215)
369 KOG3850 Predicted membrane pro 62.3 2.6E+02 0.0056 31.1 16.8 42 202-243 320-365 (455)
370 PF07445 priB_priC: Primosomal 62.1 1.4E+02 0.003 29.2 11.9 48 39-86 38-90 (173)
371 COG0497 RecN ATPase involved i 62.0 3E+02 0.0066 31.9 25.9 44 247-297 344-388 (557)
372 KOG2150 CCR4-NOT transcription 61.8 3.1E+02 0.0067 31.9 22.2 31 49-79 5-35 (575)
373 PF10205 KLRAQ: Predicted coil 61.7 1.3E+02 0.0028 27.4 11.0 69 77-145 2-70 (102)
374 KOG3809 Microtubule-binding pr 61.4 2.3E+02 0.0051 31.9 14.5 86 66-168 440-525 (583)
375 PF04100 Vps53_N: Vps53-like, 61.2 2.5E+02 0.0055 30.7 18.5 76 66-141 36-111 (383)
376 PF06156 DUF972: Protein of un 61.2 71 0.0015 29.0 9.1 33 150-182 22-54 (107)
377 PF14931 IFT20: Intraflagellar 61.1 1.4E+02 0.003 27.7 14.7 82 88-169 21-106 (120)
378 TIGR03319 YmdA_YtgF conserved 61.1 3E+02 0.0064 31.5 25.4 9 158-166 149-157 (514)
379 KOG0972 Huntingtin interacting 61.0 2.4E+02 0.0052 30.3 14.0 110 90-200 255-364 (384)
380 KOG4809 Rab6 GTPase-interactin 60.7 3.2E+02 0.0069 31.7 31.9 136 34-169 246-399 (654)
381 KOG3809 Microtubule-binding pr 60.7 1.5E+02 0.0032 33.4 12.9 23 29-51 438-460 (583)
382 PF03999 MAP65_ASE1: Microtubu 60.5 2.9 6.2E-05 48.2 0.0 26 281-306 287-312 (619)
383 PF07200 Mod_r: Modifier of ru 60.0 52 0.0011 30.6 8.4 65 226-297 29-93 (150)
384 TIGR02971 heterocyst_DevB ABC 60.0 2.2E+02 0.0047 29.6 19.5 26 134-159 95-120 (327)
385 PF14073 Cep57_CLD: Centrosome 60.0 1.9E+02 0.0041 28.8 21.6 43 222-264 118-160 (178)
386 PF14257 DUF4349: Domain of un 59.9 83 0.0018 32.0 10.5 62 142-203 131-194 (262)
387 PF08581 Tup_N: Tup N-terminal 59.0 1E+02 0.0023 26.5 9.2 63 228-290 1-63 (79)
388 PF05791 Bacillus_HBL: Bacillu 58.8 1.1E+02 0.0025 29.8 10.8 84 68-160 93-180 (184)
389 COG1730 GIM5 Predicted prefold 58.5 1.8E+02 0.0038 28.0 12.3 43 157-199 6-48 (145)
390 PRK04325 hypothetical protein; 57.9 74 0.0016 26.9 8.1 47 92-138 7-53 (74)
391 COG3206 GumC Uncharacterized p 57.8 3E+02 0.0065 30.4 25.9 28 272-299 372-399 (458)
392 KOG3647 Predicted coiled-coil 57.6 2.6E+02 0.0057 29.7 18.2 22 53-74 54-75 (338)
393 PF05529 Bap31: B-cell recepto 57.4 93 0.002 30.3 9.9 31 170-200 160-190 (192)
394 PRK04406 hypothetical protein; 57.1 89 0.0019 26.6 8.4 46 95-140 5-50 (75)
395 PF07989 Microtub_assoc: Micro 56.8 1.2E+02 0.0027 25.7 9.3 29 90-118 3-31 (75)
396 PF02403 Seryl_tRNA_N: Seryl-t 56.7 1.4E+02 0.003 26.2 11.0 33 109-141 30-62 (108)
397 KOG2264 Exostosin EXT1L [Signa 56.1 1E+02 0.0022 35.8 10.9 10 540-549 683-692 (907)
398 PRK02119 hypothetical protein; 56.0 85 0.0018 26.5 8.1 40 95-134 10-49 (73)
399 COG5293 Predicted ATPase [Gene 55.9 3.6E+02 0.0078 30.8 25.4 219 13-271 190-453 (591)
400 KOG4637 Adaptor for phosphoino 55.5 3.3E+02 0.0071 30.2 18.1 103 52-161 146-248 (464)
401 COG3096 MukB Uncharacterized p 55.2 4.6E+02 0.01 31.8 30.5 225 70-295 338-600 (1480)
402 PF05615 THOC7: Tho complex su 54.9 1.8E+02 0.0038 26.9 13.9 34 231-264 74-107 (139)
403 PF08647 BRE1: BRE1 E3 ubiquit 54.7 1.5E+02 0.0033 26.1 13.2 52 102-153 18-69 (96)
404 PF06248 Zw10: Centromere/kine 54.3 3.9E+02 0.0084 30.7 19.0 92 198-291 75-168 (593)
405 PRK00409 recombination and DNA 54.0 3.3E+02 0.0072 32.7 15.5 28 142-169 501-528 (782)
406 PF06632 XRCC4: DNA double-str 53.8 2.8E+02 0.0062 30.1 13.6 41 175-215 141-181 (342)
407 PRK02793 phi X174 lysis protei 53.3 94 0.002 26.2 7.9 43 93-135 7-49 (72)
408 PF04728 LPP: Lipoprotein leuc 52.8 1.2E+02 0.0026 24.7 8.0 46 95-140 4-49 (56)
409 PF14257 DUF4349: Domain of un 52.8 48 0.0011 33.8 7.4 63 30-111 128-193 (262)
410 COG4717 Uncharacterized conser 52.3 5.3E+02 0.011 31.7 32.2 68 102-169 621-691 (984)
411 COG5283 Phage-related tail pro 52.3 5.9E+02 0.013 32.2 25.5 198 87-298 22-227 (1213)
412 PF10805 DUF2730: Protein of u 52.2 1.3E+02 0.0029 26.9 9.3 33 170-202 64-96 (106)
413 PF14916 CCDC92: Coiled-coil d 52.2 14 0.00031 30.3 2.8 40 100-139 2-45 (60)
414 KOG4677 Golgi integral membran 52.0 4.1E+02 0.0088 30.2 24.5 43 156-198 308-350 (554)
415 PF11802 CENP-K: Centromere-as 51.8 2.9E+02 0.0062 29.2 12.7 92 187-297 87-178 (268)
416 TIGR01069 mutS2 MutS2 family p 51.7 3.4E+02 0.0073 32.6 15.0 28 142-169 496-523 (771)
417 PRK10803 tol-pal system protei 51.7 73 0.0016 32.9 8.6 43 231-280 54-96 (263)
418 PF02841 GBP_C: Guanylate-bind 51.7 3E+02 0.0066 28.7 22.9 16 5-20 38-53 (297)
419 PF07851 TMPIT: TMPIT-like pro 51.5 1.6E+02 0.0034 32.0 11.2 56 100-155 3-58 (330)
420 PLN02678 seryl-tRNA synthetase 51.4 1.2E+02 0.0025 34.2 10.6 71 221-306 44-114 (448)
421 PF09744 Jnk-SapK_ap_N: JNK_SA 51.4 2.4E+02 0.0051 27.4 19.8 27 216-242 88-114 (158)
422 PRK05431 seryl-tRNA synthetase 50.8 1.2E+02 0.0027 33.5 10.7 73 219-306 37-109 (425)
423 TIGR01010 BexC_CtrB_KpsE polys 50.7 3.4E+02 0.0073 28.9 19.7 26 272-297 277-302 (362)
424 PF05529 Bap31: B-cell recepto 50.4 1.4E+02 0.003 29.1 9.8 26 110-135 163-188 (192)
425 PF13874 Nup54: Nucleoporin co 50.3 1.2E+02 0.0026 28.4 9.1 51 96-146 46-96 (141)
426 KOG0244 Kinesin-like protein [ 50.2 5.7E+02 0.012 31.4 16.8 232 11-242 361-618 (913)
427 PRK02119 hypothetical protein; 49.9 1E+02 0.0022 26.1 7.6 41 97-137 5-45 (73)
428 PRK00295 hypothetical protein; 49.9 1E+02 0.0022 25.7 7.5 17 98-114 9-25 (68)
429 PRK13729 conjugal transfer pil 49.7 64 0.0014 36.5 8.2 35 80-114 69-103 (475)
430 PRK00846 hypothetical protein; 48.0 1.3E+02 0.0029 25.9 8.1 45 93-137 12-56 (77)
431 PF12761 End3: Actin cytoskele 47.7 1E+02 0.0022 31.0 8.5 16 102-117 97-112 (195)
432 KOG4403 Cell surface glycoprot 47.5 4.7E+02 0.01 29.6 21.7 106 186-294 310-428 (575)
433 PRK00736 hypothetical protein; 47.5 1E+02 0.0023 25.6 7.3 47 238-291 5-51 (68)
434 TIGR02894 DNA_bind_RsfA transc 47.3 2.1E+02 0.0045 28.1 10.2 73 98-171 81-153 (161)
435 PRK00846 hypothetical protein; 47.3 1.4E+02 0.0029 25.8 8.0 18 34-51 9-26 (77)
436 cd00179 SynN Syntaxin N-termin 47.2 2.3E+02 0.0049 25.9 15.1 23 272-294 94-116 (151)
437 KOG3215 Uncharacterized conser 47.1 3.3E+02 0.0072 27.8 18.9 85 174-258 99-191 (222)
438 KOG4572 Predicted DNA-binding 47.0 6.3E+02 0.014 31.0 26.9 37 179-215 996-1032(1424)
439 PF01519 DUF16: Protein of unk 46.9 1.5E+02 0.0031 27.0 8.5 45 105-149 50-94 (102)
440 PF01496 V_ATPase_I: V-type AT 46.3 1.7E+02 0.0038 34.6 11.6 19 33-51 33-51 (759)
441 smart00502 BBC B-Box C-termina 46.2 2E+02 0.0042 24.9 18.3 49 155-203 55-104 (127)
442 PLN02939 transferase, transfer 45.5 6.9E+02 0.015 31.1 27.7 27 37-63 134-160 (977)
443 PF13874 Nup54: Nucleoporin co 45.5 1.5E+02 0.0033 27.7 9.0 67 71-137 35-101 (141)
444 TIGR00414 serS seryl-tRNA synt 45.3 1.7E+02 0.0036 32.4 10.6 42 254-306 71-112 (418)
445 PRK10803 tol-pal system protei 45.0 1.4E+02 0.0031 30.8 9.5 30 112-141 58-87 (263)
446 PF05335 DUF745: Protein of un 44.9 3.3E+02 0.0072 27.2 17.4 108 78-185 65-172 (188)
447 PRK10636 putative ABC transpor 44.8 1.3E+02 0.0029 34.8 10.1 31 125-155 601-631 (638)
448 PRK00106 hypothetical protein; 44.7 5.5E+02 0.012 29.7 25.2 22 529-551 436-457 (535)
449 KOG2180 Late Golgi protein sor 44.4 6.4E+02 0.014 30.3 18.4 77 65-141 50-126 (793)
450 PF14712 Snapin_Pallidin: Snap 44.4 2E+02 0.0043 24.5 10.7 22 66-87 28-49 (92)
451 PF06810 Phage_GP20: Phage min 44.2 2.1E+02 0.0046 27.4 9.9 12 173-184 29-40 (155)
452 PF05600 DUF773: Protein of un 44.1 2.9E+02 0.0062 31.6 12.4 99 192-297 400-499 (507)
453 smart00503 SynN Syntaxin N-ter 43.9 2.2E+02 0.0047 24.8 14.3 109 171-293 8-116 (117)
454 TIGR00998 8a0101 efflux pump m 43.1 4E+02 0.0086 27.6 17.9 7 298-304 220-226 (334)
455 TIGR03545 conserved hypothetic 42.8 2.6E+02 0.0057 32.3 11.9 15 288-302 263-277 (555)
456 PRK00106 hypothetical protein; 42.7 5.9E+02 0.013 29.4 25.5 16 282-297 303-318 (535)
457 KOG3850 Predicted membrane pro 42.6 5.2E+02 0.011 28.8 17.4 46 150-195 324-370 (455)
458 cd00890 Prefoldin Prefoldin is 42.5 2.5E+02 0.0053 25.0 11.6 9 106-114 11-19 (129)
459 cd07664 BAR_SNX2 The Bin/Amphi 42.3 4E+02 0.0086 27.3 25.8 9 272-280 198-206 (234)
460 PF04728 LPP: Lipoprotein leuc 41.9 1.4E+02 0.003 24.3 6.9 9 272-280 44-52 (56)
461 TIGR02977 phageshock_pspA phag 41.9 3.7E+02 0.008 26.9 27.4 45 80-124 31-75 (219)
462 KOG0972 Huntingtin interacting 41.4 4.5E+02 0.0099 28.3 12.3 77 219-302 282-364 (384)
463 PHA02414 hypothetical protein 41.4 1.2E+02 0.0026 27.4 7.0 46 89-134 31-76 (111)
464 PF08172 CASP_C: CASP C termin 41.4 3.6E+02 0.0078 28.0 11.6 40 219-258 81-120 (248)
465 KOG2010 Double stranded RNA bi 41.2 1.2E+02 0.0025 33.0 8.1 84 173-256 121-207 (405)
466 COG3096 MukB Uncharacterized p 41.1 7.5E+02 0.016 30.2 33.4 258 39-296 786-1096(1480)
467 PF13094 CENP-Q: CENP-Q, a CEN 41.1 2.2E+02 0.0047 27.0 9.4 69 68-136 22-90 (160)
468 PF15112 DUF4559: Domain of un 41.0 3.8E+02 0.0082 28.9 11.8 143 43-190 165-307 (307)
469 PF04871 Uso1_p115_C: Uso1 / p 40.7 3.2E+02 0.0068 25.7 15.1 102 75-176 3-110 (136)
470 PF04880 NUDE_C: NUDE protein, 40.7 35 0.00076 33.4 4.0 52 226-289 2-53 (166)
471 PF15233 SYCE1: Synaptonemal c 40.3 3.3E+02 0.0072 25.9 15.4 133 34-200 2-134 (134)
472 PLN02678 seryl-tRNA synthetase 40.2 1.7E+02 0.0037 32.9 9.7 76 108-187 33-108 (448)
473 PF15456 Uds1: Up-regulated Du 39.7 3.2E+02 0.0069 25.5 11.8 80 86-166 21-111 (124)
474 PF06548 Kinesin-related: Kine 39.6 6.2E+02 0.013 28.8 28.2 234 43-296 198-471 (488)
475 TIGR02894 DNA_bind_RsfA transc 39.4 2.7E+02 0.0059 27.3 9.7 77 219-302 82-161 (161)
476 PF05546 She9_MDM33: She9 / Md 39.3 4.3E+02 0.0094 26.9 16.8 119 65-183 1-132 (207)
477 COG0466 Lon ATP-dependent Lon 39.2 3E+02 0.0065 33.0 11.6 94 59-157 182-281 (782)
478 PRK13729 conjugal transfer pil 39.0 83 0.0018 35.6 7.0 54 237-290 68-121 (475)
479 PF09403 FadA: Adhesion protei 39.0 3.3E+02 0.0072 25.5 15.0 94 97-191 23-126 (126)
480 KOG3501 Molecular chaperone Pr 38.9 3.1E+02 0.0068 25.2 12.0 89 173-261 5-111 (114)
481 PF10779 XhlA: Haemolysin XhlA 38.6 1.7E+02 0.0038 24.2 7.3 51 89-139 1-51 (71)
482 PF10458 Val_tRNA-synt_C: Valy 38.5 1.4E+02 0.0031 24.3 6.7 50 120-169 2-65 (66)
483 PF15294 Leu_zip: Leucine zipp 38.4 5.1E+02 0.011 27.5 24.9 228 39-297 9-277 (278)
484 PF13815 Dzip-like_N: Iguana/D 38.4 2.6E+02 0.0055 25.4 9.0 59 70-131 59-117 (118)
485 PF15035 Rootletin: Ciliary ro 38.3 4.1E+02 0.0088 26.3 19.5 142 55-196 1-166 (182)
486 PF08232 Striatin: Striatin fa 38.2 3.4E+02 0.0074 25.4 10.1 64 103-166 6-69 (134)
487 PF14916 CCDC92: Coiled-coil d 38.0 26 0.00056 28.9 2.2 37 36-72 1-45 (60)
488 PF10046 BLOC1_2: Biogenesis o 38.0 2.8E+02 0.0062 24.4 13.1 85 120-204 12-99 (99)
489 PF09766 FimP: Fms-interacting 38.0 5.6E+02 0.012 27.8 15.9 148 162-322 3-172 (355)
490 cd07665 BAR_SNX1 The Bin/Amphi 37.6 4.7E+02 0.01 26.9 26.0 203 73-291 1-218 (234)
491 PF08581 Tup_N: Tup N-terminal 37.4 2.7E+02 0.0059 24.0 11.1 68 66-133 4-71 (79)
492 PF07083 DUF1351: Protein of u 37.4 4.4E+02 0.0096 26.5 13.5 106 152-300 17-128 (215)
493 PRK05431 seryl-tRNA synthetase 37.4 4E+02 0.0087 29.5 12.0 96 102-201 3-103 (425)
494 PF05377 FlaC_arch: Flagella a 37.2 79 0.0017 25.7 4.8 52 232-290 1-52 (55)
495 PF04201 TPD52: Tumour protein 37.1 61 0.0013 31.6 4.9 43 237-300 28-70 (162)
496 PF15450 DUF4631: Domain of un 37.0 7.1E+02 0.015 28.7 32.4 248 43-295 227-477 (531)
497 PF05546 She9_MDM33: She9 / Md 37.0 4.7E+02 0.01 26.7 17.1 116 41-177 5-141 (207)
498 PF05700 BCAS2: Breast carcino 37.0 4.5E+02 0.0097 26.4 14.8 112 6-119 106-221 (221)
499 PLN02320 seryl-tRNA synthetase 36.8 2.8E+02 0.0061 31.7 10.8 80 217-307 93-174 (502)
500 PF10243 MIP-T3: Microtubule-b 36.3 12 0.00026 42.5 0.0 139 70-208 395-539 (539)
No 1
>KOG0965 consensus Predicted RNA-binding protein, contains SWAP and G-patch domains [General function prediction only]
Probab=100.00 E-value=1.8e-37 Score=337.94 Aligned_cols=477 Identities=7% Similarity=-0.144 Sum_probs=416.7
Q ss_pred HHhhhHHHHHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHH
Q 008630 30 EEKTGQLLVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKI 109 (559)
Q Consensus 30 e~~~~~~~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leer 109 (559)
..++.++.+++.|++.++++++...+..+++|++.+.+++++.+|.+.++..-.. .-.|+......+.+..+
T Consensus 32 ~~~~~s~~~~~~s~~~~~~~~k~~~~~~~~~~~d~rd~~~~~~~l~~~~~~d~~~--------~~~~~~~~~~~~~~~~~ 103 (988)
T KOG0965|consen 32 VFPGPSFRSSNPSISDDSYFRKECGRDLEFSHSDSRDQVIGHRKLGHFRSQDWKF--------ALRGSWEQDFGHPVSQE 103 (988)
T ss_pred hCCCCCcccCCccccchHHHHHHhhhhhhhhccchHHHHHHHHHhhhhcchhhhh--------hccCceeeecCcchhhh
Confidence 4678889999999999999999999999999999999999999999998876544 66788888899999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 110 VDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEE 189 (559)
Q Consensus 110 L~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIse 189 (559)
-.+++ +++....-.+..+..++..+...++.-...+..-+.+...+..+.....+.++++.+.+-+...++..
T Consensus 104 s~~~q-------e~~~~~s~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~gr~~~i~~q~~~~~~~ 176 (988)
T KOG0965|consen 104 SSWSQ-------EYSFGPSAVLGDFGSSRLIEKECLEKESRDYDVDHPGEADSVLRGSSQVQARGRALNIVDQEGSLLGK 176 (988)
T ss_pred hHHHH-------HhhcCcchhhhhhhhHHHHHHHHhhhcccccccCCchhhhhhhhhhHHHHhhhHHHHHHHhhhhhhcc
Confidence 99998 67777778888888888888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHH
Q 008630 190 GRKLQEQLLQQIDFKSSEITKNKQEF---EKEKQLLLDKVRG-LEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKT 265 (559)
Q Consensus 190 lr~~iq~LeQeLE~~~~Ei~kle~EL---EkE~~el~kkie~-l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~ 265 (559)
+.++..-+..-+-.+...+..+.+.+ ++++.-.++...+ ++......... ...+..+-.+..
T Consensus 177 g~t~~~~~~~~~~~~~~~~~n~~~k~~~~~~~~t~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~ 242 (988)
T KOG0965|consen 177 GETQGLLTAKGGVGKLVTLRNVSTKKIPTVNRITPKTQGTNQIQKNTPSPDVTL--------------GTNPGTEDIQFP 242 (988)
T ss_pred chhhhhhhhcCcceeEeeecccccccCCccccccccccccchhhcCCCCCcccc--------------ccCCCccccccc
Confidence 99999999988888888888888887 7777777666543 33333322111 134555666778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccccccccccccccccCCCCCCCCCCCCchh-HHHHhhhhhhh
Q 008630 266 AELMAEKKKRRDVIDAYKRLKSQYNYICAKFGLTTDKMTSEHKVEEESDSLTHRRNPIPFPDKHSDAS-AAYCEINKVKK 344 (559)
Q Consensus 266 ~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 344 (559)
.++.++..++..|+.-.+..+++|.++|..|.++..++|+.+.+++++++++.|+ +..+-- ..+.+++++..
T Consensus 243 ~~~~~~~~~~k~l~~~~~k~~~~~~~~~~~f~~~~~~i~~~~~~~~~~~~i~~~~-------~~~~~~e~~~~~~a~~~~ 315 (988)
T KOG0965|consen 243 IQKIPLGLDLKNLRLPRRKMSFDIIDKSDVFSRFGIEIIKWAGFHTIKDDIKFSQ-------LFQTLFELETETCAKMLA 315 (988)
T ss_pred HHHhhhhcchhhhcchhhhhhhhhhHHHhhhccccHhHhhhcccchhhhhhhHHH-------HHHHHHHhhhHHHHHHHh
Confidence 8899999999999999999999999999999999999999999999999999997 433222 66788899999
Q ss_pred hccCCCCcchhhhhhhcccccccCCCCccccccCCCCCCCCCCccccCCCCCchhhhhhccCCCCCCCcccccCChhhhh
Q 008630 345 EVGLSDNLDNEKKAKSVQTSSFHSSSSGFIVTEKCPSNVKSAPIAGTKRPASSWRETRSRQYEGGPDPHDDFLDTPFENI 424 (559)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~p~~~~~~~r~~~~~~~~d~~d~~~d~~~~~~ 424 (559)
.+..+.|.++++..+..++..++||+.+. ...|...+....+|.++|.+.|+++||++.+++.||||+||++|.++|
T Consensus 316 ~~~~~~~~~~~~~~~~ti~~~~~s~~~t~---~~~~~~~~~~~~~G~~~~~~~~~~~~s~~~~~~~~~qd~lL~s~~~~l 392 (988)
T KOG0965|consen 316 SFKCSLKPEHRDFCFFTIKFLKHSALKTP---RVDNEFLNMLLDKGAVKTKNCFFEIISPFDKYIMRLQDRLLKSVTPLL 392 (988)
T ss_pred heeeccCCcccchhhhhHHhhhccccccc---ccChhhccchhhhccccccceeccccCcccccCcChHHHHHhcchHHH
Confidence 99999999999999999999999999987 446888999999999999999999999999999999999999999999
Q ss_pred hhccccccccccCCCCCCCcCCCCCCCCcchhccCCCCccccccCCCCCCCCCCCccccccccChhhhhcCCCCChhhhH
Q 008630 425 RGNLNKVMKEDVHDRPDPAAKDMNLDSSDDETQDMNIDTGRQRQQNPVPTAGKQGFKYVEPVRKKVERENLKGVECKQCK 504 (559)
Q Consensus 425 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~fay~EvVR~K~eR~~L~G~~C~~C~ 504 (559)
+ ..+..|.+......+ +++|++++++|..+++.++..+++-+....|.|.+-||.+++|-++.|..|+.|.
T Consensus 393 ~----a~~~~e~~v~~vA~~-----~p~d~~~~~~~~nssc~~~~~~~~~Tf~~~f~~~q~~~~~a~~~~~~~~~p~~~p 463 (988)
T KOG0965|consen 393 M----ACNAYELSVKMVALS-----NPLDLALALETTNSSCRKSLALLGQTFSLAFSFRQEKILEAVGLQDIAPSPAAFP 463 (988)
T ss_pred H----HHHHHHhhhhhhccC-----CCCChHHHhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHhhccccccCCCCccCC
Confidence 9 455666666555555 7789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCCCCCCCccccchhhhhccccCCcccCCCCCCCCCCccCCCCCC
Q 008630 505 KFYDAVLPSDGGKESDGSKKTLRCEHHEGVSRHRYKYIPPLTPEGFWNIGFESE 558 (559)
Q Consensus 505 ~~Y~a~~~~~~~~~~~~~~~~~~~~~~~~~sRHR~~~~pp~TPpGFW~~~FPs~ 558 (559)
.||++..+..... ......|.|+..+++|||+|++|.||++||.++|-++
T Consensus 464 ~f~d~~~~~~e~~----~~~~~~~~~~g~v~~~~~a~~~Pm~~e~~~~~~~~~e 513 (988)
T KOG0965|consen 464 NFEDSTLFGREYI----DHLKAWLVSSGCVLQVKKAEPEPMREEEKMIPPTKPE 513 (988)
T ss_pred Chhhccchhhhcc----ccceeeeecCCchhhhhcccCCCCCCCcccCCCCChH
Confidence 9999997765543 2334578999999999999999999999999999765
No 2
>PF08573 SAE2: DNA repair protein endonuclease SAE2/CtIP C-terminus; InterPro: IPR013882 SAE2 is a protein involved in repairing meiotic and mitotic double-strand breaks in DNA. It has been shown to negatively regulate DNA damage checkpoint signalling [, ]. SAE2 is homologous to the CtIP proteins in mammals and an homologous protein in plants. Crucial sequence motifs that are highly conserved are the CxxC and the RHR motifs in this C-terminal part of the protein []. It is now known to be an endonuclease. In budding yeast, genetic evidence suggests that the SAE2 protein is essential for the processing of hairpin DNA intermediates and meiotic double-strand breaks by Mre11/Rad50 complexes. SAE2 binds DNA and exhibits endonuclease activity on single-stranded DNA independently of Mre11/Rad50 complexes, but hairpin DNA structures are cleaved cooperatively in the presence of Mre11/Rad50 or Mre11/Rad50/Xrs2. Hairpin structures are not processed at the tip by SAE2 but rather at single-stranded DNA regions adjacent to the hairpin. The catalytic activities of SAE2 are important for its biological functions [].
Probab=99.94 E-value=6.8e-28 Score=209.35 Aligned_cols=77 Identities=43% Similarity=0.778 Sum_probs=63.9
Q ss_pred cccccccChhhhhcCCCC---ChhhhHHHHHhhCCCCCCCC------CCC----ccccc---hhhhhccccCCcccCCCC
Q 008630 481 KYVEPVRKKVERENLKGV---ECKQCKKFYDAVLPSDGGKE------SDG----SKKTL---RCEHHEGVSRHRYKYIPP 544 (559)
Q Consensus 481 ay~EvVR~K~eR~~L~G~---~C~~C~~~Y~a~~~~~~~~~------~~~----~~~~~---~~~~~~~~sRHR~~~~pp 544 (559)
||+||||+|++|++|+|| +|.||++||+||++.+.... +.. ...+. ..+|+|.||||||+|+||
T Consensus 1 a~~eVVR~k~eR~~l~G~~~~~C~~C~~~y~a~~~~~~~~~~~~~l~~~~~~~~~~~~~eak~~~~~~~~sRHR~~~~rp 80 (93)
T PF08573_consen 1 AFDEVVRKKDERKCLPGCTRPDCKCCGKFYRALAPLERPNEDAYELPTMSEEERKELLIEAKKKELANKFSRHRYRYARP 80 (93)
T ss_pred CcchhhcCHHHHhhCCCCCccchHHHHHHHHHHhhcccccchhhhcccccHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Confidence 799999999999999999 99999999999998765431 000 11111 257899999999999999
Q ss_pred CCCCCCccCCCCC
Q 008630 545 LTPEGFWNIGFES 557 (559)
Q Consensus 545 ~TPpGFW~~~FPs 557 (559)
.||||||++|||+
T Consensus 81 ~TPpGfW~~dFP~ 93 (93)
T PF08573_consen 81 STPPGFWDIDFPD 93 (93)
T ss_pred CCCCCCcCCCCCC
Confidence 9999999999997
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.21 E-value=1.5e-07 Score=111.32 Aligned_cols=204 Identities=16% Similarity=0.173 Sum_probs=94.3
Q ss_pred HHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 85 KCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLT 164 (559)
Q Consensus 85 ~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~e 164 (559)
.+..+..+..++..++.++..++.++..+......+..++......+..+...++.+...+..+...+..++.++..+..
T Consensus 292 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 371 (1164)
T TIGR02169 292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRA 371 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555555555555555555555555555555555555555444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 165 KFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF---EKEKQLLLDKVRGLEEKANELKKNFC 241 (559)
Q Consensus 165 k~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL---EkE~~el~kkie~l~ek~eeLq~eie 241 (559)
.+..++..+..+...+..+..++..+...+..+..++..+..++..+..++ ...+..+..++..+...+..+...+.
T Consensus 372 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~ 451 (1164)
T TIGR02169 372 ELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIK 451 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444433 33444444444444444444444444
Q ss_pred HHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 242 EKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQ 288 (559)
Q Consensus 242 elkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSq 288 (559)
.+..++..+...+..+..++.....++..-...+..+..++..++..
T Consensus 452 ~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~ 498 (1164)
T TIGR02169 452 KQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ 498 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444222222244444444444444433
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.17 E-value=6.4e-07 Score=105.97 Aligned_cols=126 Identities=19% Similarity=0.243 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008630 170 EENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF---EKEKQLLLDKVRGLEEKANELKKNFCEKSSK 246 (559)
Q Consensus 170 eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL---EkE~~el~kkie~l~ek~eeLq~eieelkek 246 (559)
+..+..++..+..+..++..++..+..+..++......+..+..++ +..+..+...+..+...+..++..+..+..+
T Consensus 370 ~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 449 (1164)
T TIGR02169 370 RAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALE 449 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444443 4445555555555555555555555555555
Q ss_pred hhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008630 247 QGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAK 295 (559)
Q Consensus 247 L~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k 295 (559)
+..+...++.+..++.....++..-...+..+...+..+.+.+..+-..
T Consensus 450 l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~ 498 (1164)
T TIGR02169 450 IKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ 498 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554444444444455555555555555554443
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.13 E-value=8.2e-07 Score=104.63 Aligned_cols=104 Identities=21% Similarity=0.293 Sum_probs=46.6
Q ss_pred HHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 008630 38 VKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQL 117 (559)
Q Consensus 38 ~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~ 117 (559)
.++..+...++.++.++.....++.....-...+-..++.+...+...+..+..+...+..+...+..+..++..++...
T Consensus 232 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~ 311 (1179)
T TIGR02168 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL 311 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444444444444444444344433333333333333444444444445555555555555555555555555554444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 008630 118 GAKTEEVAREKELTENLFKKIEKL 141 (559)
Q Consensus 118 ~kl~EEIee~kekleeL~~eIe~L 141 (559)
..+..++......+..+...+..+
T Consensus 312 ~~l~~~~~~l~~~~~~~~~~~~~~ 335 (1179)
T TIGR02168 312 ANLERQLEELEAQLEELESKLDEL 335 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.12 E-value=5.5e-07 Score=106.08 Aligned_cols=71 Identities=13% Similarity=0.041 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 221 LLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNY 291 (559)
Q Consensus 221 el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~ 291 (559)
.+...+..+...+..+...+..+..++......+..+..++.....++..-..++..+..++..+...+..
T Consensus 870 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~e 940 (1179)
T TIGR02168 870 ELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN 940 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444443333333333222222244444444444444444433
No 7
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=99.03 E-value=9.8e-06 Score=89.97 Aligned_cols=88 Identities=25% Similarity=0.316 Sum_probs=67.8
Q ss_pred hHHHHHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 008630 34 GQLLVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDEL 113 (559)
Q Consensus 34 ~~~~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~L 113 (559)
..|-..+.+|+.+|+.|+.++...-++...-..-...|....+.+..+.......+.+...+|..++.++..+..++...
T Consensus 160 ~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~ 239 (546)
T PF07888_consen 160 EQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQ 239 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678888888888888888877777777777777777777788888888888888888888888888888888666
Q ss_pred HHHHhhhH
Q 008630 114 QRQLGAKT 121 (559)
Q Consensus 114 eek~~kl~ 121 (559)
+....++.
T Consensus 240 e~~~~~lk 247 (546)
T PF07888_consen 240 EKELDKLK 247 (546)
T ss_pred HHHHHHHH
Confidence 55555444
No 8
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.92 E-value=1e-05 Score=100.22 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 217 KEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNY 291 (559)
Q Consensus 217 kE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~ 291 (559)
.+...+..++++....+..++..+.+++.++.++.++++..+...+.. .+.++++..+|.-|+-.++.
T Consensus 1076 ~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~-------ek~r~dL~~ele~l~~~Lee 1143 (1930)
T KOG0161|consen 1076 SELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKA-------ERQRRDLSEELEELKEELEE 1143 (1930)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444444444444444444 44444444444444444333
No 9
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.89 E-value=7.7e-06 Score=95.61 Aligned_cols=223 Identities=19% Similarity=0.279 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 89 LEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEV 168 (559)
Q Consensus 89 L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~ 168 (559)
+++.+...+.++..++..++++..|+++...+...++..+..+......|..+..+..-...+++++.+.++-++-+...
T Consensus 276 V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~ 355 (1074)
T KOG0250|consen 276 VNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVND 355 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555566666665555555555555444334444444444444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008630 169 FEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEFEKEKQLLLDKVRGLEEKANELKKNFCEKSSKQG 248 (559)
Q Consensus 169 leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~ELEkE~~el~kkie~l~ek~eeLq~eieelkekL~ 248 (559)
++.++...++.+.++..++..++.++..+..+. ..+......+.+++++.|...++.+++.+..|.++++.+..++.
T Consensus 356 ~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~---~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~ 432 (1074)
T KOG0250|consen 356 LKEEIREIENSIRKLKKEVDRLEKQIADLEKQT---NNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAK 432 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666666554 11222222333788888889999999999999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccccccccccccccccCCCCCC
Q 008630 249 WGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFGLTTDKMTSEHKVEEESDSLTHRRNPIP 324 (559)
Q Consensus 249 ~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (559)
..++++..+...+..+ .++++....+.+.|+.--++-..+||=++...|+. |+....-+ ++|+-+|
T Consensus 433 ~~~ee~~~i~~~i~~l-------~k~i~~~~~~l~~lk~~k~dkvs~FG~~m~~lL~~--I~r~~~~f-~~~P~GP 498 (1074)
T KOG0250|consen 433 EEEEEKEHIEGEILQL-------RKKIENISEELKDLKKTKTDKVSAFGPNMPQLLRA--IERRKRRF-QTPPKGP 498 (1074)
T ss_pred HhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcccchhhhcchhhHHHHHH--HHHHHhcC-CCCCCCC
Confidence 9999999999999888 99999999999999999999999999666666654 34444333 4444444
No 10
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.86 E-value=2.2e-05 Score=94.92 Aligned_cols=239 Identities=23% Similarity=0.272 Sum_probs=125.1
Q ss_pred HHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 008630 38 VKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQL 117 (559)
Q Consensus 38 ~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~ 117 (559)
..+.+++..++.++..+....++|.. |-..+......+...+..+..+...+..++.++..+..++.++....
T Consensus 246 ~~l~~~~~~~~~~~~~~~~~~~~i~~-------~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~ 318 (1163)
T COG1196 246 EELSRLEEELEELQEELEEAEKEIEE-------LKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENEL 318 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333333 33333444444444444455555566666666666666666666666
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 118 GAKTEEVAREKELTENLFKKIEKLSLDISHYKQ-------LLADEKKEKK----CFLTKFEVFEENVSRLQEELTKKTEE 186 (559)
Q Consensus 118 ~kl~EEIee~kekleeL~~eIe~Le~eie~~e~-------eLee~EkEke----el~ek~e~leeEv~eLqekl~q~ekE 186 (559)
..+...+...+..+......+.........+.. ..+.++.... .+...+..+++++..+..++..+.++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (1163)
T COG1196 319 EELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNE 398 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665555554222222222 2222222222 12222333355555555555555556
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHH
Q 008630 187 VEEGRKLQEQLLQQIDFKSSEITKNKQEF---EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQ 263 (559)
Q Consensus 187 Iselr~~iq~LeQeLE~~~~Ei~kle~EL---EkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~ 263 (559)
+..++.+++.+..+++.+...+..+..++ +.++..+...++++...+..|...++.+...+..++..+..+...+..
T Consensus 399 l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (1163)
T COG1196 399 LEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQR 478 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665555555555555554 444444555556666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 264 KTAELMAEKKKRRDVIDAYKRLKSQYN 290 (559)
Q Consensus 264 k~~el~~e~rKl~~l~~eyk~LKSqi~ 290 (559)
. ...+......+..|..+..
T Consensus 479 ~-------~~~l~~~~~~~~~l~~~~~ 498 (1163)
T COG1196 479 L-------EKELSSLEARLDRLEAEQR 498 (1163)
T ss_pred H-------HHHHHHHHHHHHHHHHHhh
Confidence 6 5555555555555555433
No 11
>PRK02224 chromosome segregation protein; Provisional
Probab=98.86 E-value=2.6e-05 Score=91.14 Aligned_cols=42 Identities=19% Similarity=0.208 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Q 008630 173 VSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQE 214 (559)
Q Consensus 173 v~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~E 214 (559)
+..++..+..+...+......++....+++.+..++..++..
T Consensus 511 l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~ 552 (880)
T PRK02224 511 IERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAE 552 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444333
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=98.84 E-value=3.6e-05 Score=89.88 Aligned_cols=9 Identities=22% Similarity=0.372 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 008630 106 HKKIVDELQ 114 (559)
Q Consensus 106 leerL~~Le 114 (559)
++..+..++
T Consensus 354 le~~~~~l~ 362 (880)
T PRK02224 354 LEERAEELR 362 (880)
T ss_pred HHHHHHHHH
Confidence 333333333
No 13
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.83 E-value=5.3e-05 Score=94.11 Aligned_cols=268 Identities=20% Similarity=0.202 Sum_probs=124.6
Q ss_pred HHhhhHHHHHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHH
Q 008630 30 EEKTGQLLVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKI 109 (559)
Q Consensus 30 e~~~~~~~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leer 109 (559)
|.+..++-.....+..+...|+-.+.....-..++-++-..|...-+.+...+.++...+.+.+.+...++.+.+-.+..
T Consensus 858 e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e 937 (1930)
T KOG0161|consen 858 ESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQE 937 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444445555555555555555555555555555555555555555555555555555555554444444
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 008630 110 VDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVF-------EENVSRLQEELTK 182 (559)
Q Consensus 110 L~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~l-------eeEv~eLqekl~q 182 (559)
+..++.........+.+.......+...|..++.++..+...++.+.+++..+.+.+..+ ++.+..|.....+
T Consensus 938 ~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~k 1017 (1930)
T KOG0161|consen 938 VQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAK 1017 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444444444333 3333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchh
Q 008630 183 KTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF----------EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMD 252 (559)
Q Consensus 183 ~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL----------EkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~ 252 (559)
++..+.++...+++-....-.++..+.++..++ ...+.++...+......+..++.+++.....+..+..
T Consensus 1018 le~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k 1097 (1930)
T KOG0161|consen 1018 LEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQK 1097 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333333333333333333222333333333332 2333333333344444455555555555555555555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008630 253 SNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFG 297 (559)
Q Consensus 253 eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~ 297 (559)
.+.+|..+|..+.-+|-.|+..+......+.-|...|..|.....
T Consensus 1098 ~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Le 1142 (1930)
T KOG0161|consen 1098 QIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELE 1142 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555444
No 14
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.82 E-value=7.2e-06 Score=82.48 Aligned_cols=179 Identities=15% Similarity=0.177 Sum_probs=85.8
Q ss_pred HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 86 CDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTK 165 (559)
Q Consensus 86 Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek 165 (559)
...+..++..+..+...+..++..+...+.++......+......+.+....+..|+.........|..++..+......
T Consensus 28 ~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~ 107 (237)
T PF00261_consen 28 EKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRR 107 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444444444444444444445555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 166 FEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF---EKEKQLLLDKVRGLEEKANELKKNFCE 242 (559)
Q Consensus 166 ~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL---EkE~~el~kkie~l~ek~eeLq~eiee 242 (559)
.......+.+..+++..++.++.......+.+...+..+..++....+.| +.....+..+.+.+..++..|...+..
T Consensus 108 ~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lke 187 (237)
T PF00261_consen 108 AEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKE 187 (237)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 55554444444444444444444444444444444444444444444443 333333444445555555555555555
Q ss_pred HhhhhhcchhhhHHHHHHHHHH
Q 008630 243 KSSKQGWGMDSNDKLLQEIEQK 264 (559)
Q Consensus 243 lkekL~~~e~eieeL~eqL~~k 264 (559)
........+..+..|..+|+.+
T Consensus 188 aE~Rae~aE~~v~~Le~~id~l 209 (237)
T PF00261_consen 188 AENRAEFAERRVKKLEKEIDRL 209 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.82 E-value=1.8e-05 Score=95.59 Aligned_cols=12 Identities=8% Similarity=-0.150 Sum_probs=5.7
Q ss_pred cccCCCCCCCcC
Q 008630 434 EDVHDRPDPAAK 445 (559)
Q Consensus 434 ~e~~~~~~~~~~ 445 (559)
.++|+.=+++..
T Consensus 1118 ~~sQFIvIThr~ 1129 (1163)
T COG1196 1118 KETQFIVITHRK 1129 (1163)
T ss_pred cCCeEEEEEcCh
Confidence 444555444443
No 16
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.73 E-value=1.4e-05 Score=80.45 Aligned_cols=177 Identities=15% Similarity=0.155 Sum_probs=91.5
Q ss_pred HHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 008630 38 VKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQL 117 (559)
Q Consensus 38 ~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~ 117 (559)
..+.-.+.++..++.+++...+.....-.=...|-+.|+.+-..+......|.....++..++....-.+..++.|+.+.
T Consensus 8 ~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~ 87 (237)
T PF00261_consen 8 DELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENRE 87 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33333344444444444444444444333333444444444444444444444444444444444444444444444444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 118 GAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQL 197 (559)
Q Consensus 118 ~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~L 197 (559)
..--+.|..+..++..+....+.....+......|...+..++....+.+.....+..|+..|..+.+.+..+.......
T Consensus 88 ~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~ 167 (237)
T PF00261_consen 88 QSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKA 167 (237)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 44445555555555555555555555556666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhhhhHHHHHhHHH
Q 008630 198 LQQIDFKSSEITKNKQE 214 (559)
Q Consensus 198 eQeLE~~~~Ei~kle~E 214 (559)
.++.+.+...|..+...
T Consensus 168 ~~re~~~e~~i~~L~~~ 184 (237)
T PF00261_consen 168 SEREDEYEEKIRDLEEK 184 (237)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 66555555555555533
No 17
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.64 E-value=0.00029 Score=78.50 Aligned_cols=28 Identities=7% Similarity=0.161 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 008630 272 KKKRRDVIDAYKRLKSQYNYICAKFGLT 299 (559)
Q Consensus 272 ~rKl~~l~~eyk~LKSqi~~L~~k~~~~ 299 (559)
+..-..++.+...|...|.-|..++|--
T Consensus 430 qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 430 QKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555666666777777777777643
No 18
>PRK03918 chromosome segregation protein; Provisional
Probab=98.62 E-value=0.00038 Score=81.21 Aligned_cols=92 Identities=18% Similarity=0.249 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008630 171 ENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF-EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGW 249 (559)
Q Consensus 171 eEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL-EkE~~el~kkie~l~ek~eeLq~eieelkekL~~ 249 (559)
.++..+...+..+..++..++..+..+..++..+...+..+...+ ..++..+...++.++..+..+...+..+..++..
T Consensus 612 ~~l~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~ 691 (880)
T PRK03918 612 KELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREE 691 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444445555555555555555555544444444222 3444555555555555555555555555555555
Q ss_pred chhhhHHHHHHHH
Q 008630 250 GMDSNDKLLQEIE 262 (559)
Q Consensus 250 ~e~eieeL~eqL~ 262 (559)
+...++.+...+.
T Consensus 692 l~~~i~~~~~~~~ 704 (880)
T PRK03918 692 IKKTLEKLKEELE 704 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544443
No 19
>PRK03918 chromosome segregation protein; Provisional
Probab=98.60 E-value=0.00051 Score=80.23 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHH
Q 008630 77 SKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVD 111 (559)
Q Consensus 77 ~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~ 111 (559)
.....+...+.++..+...+..+..++..++.++.
T Consensus 235 ~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~ 269 (880)
T PRK03918 235 ELKEEIEELEKELESLEGSKRKLEEKIRELEERIE 269 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 20
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.53 E-value=0.00051 Score=81.18 Aligned_cols=124 Identities=16% Similarity=0.254 Sum_probs=70.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 81 EIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKK 160 (559)
Q Consensus 81 eL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEke 160 (559)
.....++.+.+++.+--..+..++.+...+..|+..+.+...++...+.-.+.+...|..+..++..+...+...+.+++
T Consensus 385 ~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~ 464 (1293)
T KOG0996|consen 385 KFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD 464 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555556666666666666666666
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008630 161 CFLTKFEVF----EENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFK 204 (559)
Q Consensus 161 el~ek~e~l----eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~ 204 (559)
+++..++.. ++++..++..+....+++.+.+..++-.+.+++.+
T Consensus 465 e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L 512 (1293)
T KOG0996|consen 465 EILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDIL 512 (1293)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555444 55555555555555555555555555555555444
No 21
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.48 E-value=0.0015 Score=80.25 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhcchhhhHHHHHHH
Q 008630 216 EKEKQLLLDKVRGLEEKANELKKNFCEK--SSKQGWGMDSNDKLLQEI 261 (559)
Q Consensus 216 EkE~~el~kkie~l~ek~eeLq~eieel--kekL~~~e~eieeL~eqL 261 (559)
..++..+.+.+.++......+...+..+ ..++......|..|..++
T Consensus 997 ~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~ 1044 (1311)
T TIGR00606 997 NEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEM 1044 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444 333333334444333333
No 22
>PRK01156 chromosome segregation protein; Provisional
Probab=98.48 E-value=0.002 Score=75.82 Aligned_cols=11 Identities=27% Similarity=0.262 Sum_probs=5.4
Q ss_pred cCCCCChhhhH
Q 008630 494 NLKGVECKQCK 504 (559)
Q Consensus 494 ~L~G~~C~~C~ 504 (559)
.|.|+...-|+
T Consensus 801 ~lS~G~~~~~~ 811 (895)
T PRK01156 801 SLSGGEKTAVA 811 (895)
T ss_pred cCCHhHHHHHH
Confidence 35555554443
No 23
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.46 E-value=0.00093 Score=78.79 Aligned_cols=104 Identities=18% Similarity=0.228 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 109 IVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVE 188 (559)
Q Consensus 109 rL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIs 188 (559)
.+..+.+....+.+.+....+.++.....+..+...+-+.+.++..+..+.+...++++.+++.+..+.+...++..++.
T Consensus 282 ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~ 361 (1074)
T KOG0250|consen 282 QLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIR 361 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444445555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhH
Q 008630 189 EGRKLQEQLLQQIDFKSSEITKNK 212 (559)
Q Consensus 189 elr~~iq~LeQeLE~~~~Ei~kle 212 (559)
...+.+..+...++.+...|...+
T Consensus 362 ~~~n~i~~~k~~~d~l~k~I~~~~ 385 (1074)
T KOG0250|consen 362 EIENSIRKLKKEVDRLEKQIADLE 385 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555444444444
No 24
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.43 E-value=0.0015 Score=80.19 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHH
Q 008630 220 QLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEI 261 (559)
Q Consensus 220 ~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL 261 (559)
..+......+...++.|......+..++..++..|..+..+|
T Consensus 1050 ~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1050 LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444444444444
No 25
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.39 E-value=0.0014 Score=76.15 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=20.8
Q ss_pred hhHHHHHHHhHHHhHHHHHHHHHHHhHhhhhH
Q 008630 33 TGQLLVKLESQRCEINELKQELEFKSKEVEGV 64 (559)
Q Consensus 33 ~~~~~~~~~sl~~~~~~l~~~~~~k~~~v~~~ 64 (559)
.+.+..++.-++..+.+|+-.+..+.++....
T Consensus 178 ~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~ 209 (775)
T PF10174_consen 178 DNEALRRIREAEARIMRLESLLERKEKEHMEA 209 (775)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34455667777777777777777666666444
No 26
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.32 E-value=0.011 Score=67.15 Aligned_cols=204 Identities=21% Similarity=0.226 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 90 EEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVF 169 (559)
Q Consensus 90 ~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~l 169 (559)
.++....+.+.-+.+.+.......--.+....+.+...+.+-..+.+.|+.|+..-..+...|+.+..+.......+.+.
T Consensus 488 ~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~k 567 (786)
T PF05483_consen 488 TELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCK 567 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666667777776666777778888888888888888888886666667888888888888888877776
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 170 ----EENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF---EKEKQLLLDKVRGLEEKANELKKNFCE 242 (559)
Q Consensus 170 ----eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL---EkE~~el~kkie~l~ek~eeLq~eiee 242 (559)
+++...+.-.+....+.+..+.+....|..+++.....+..+.++- .+....-.+++..+..+++.|+.+++.
T Consensus 568 l~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~ 647 (786)
T PF05483_consen 568 LDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELEN 647 (786)
T ss_pred hhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677778888888888888888888888888888888887777662 333333344445555555555555555
Q ss_pred HhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 243 KSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYIC 293 (559)
Q Consensus 243 lkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~ 293 (559)
++....+.-+.+..-.+.-.....+|+.|-.++...-.+--.++..++.-|
T Consensus 648 ~kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k~~a~EAvK~q~EtdlrC 698 (786)
T PF05483_consen 648 LKKKHEEETDKYQKEIESKSISEEELLGEVEKAKLTADEAVKLQEETDLRC 698 (786)
T ss_pred HHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 544433333322222222222234566666666655555556666555544
No 27
>PRK11637 AmiB activator; Provisional
Probab=98.31 E-value=0.00084 Score=72.93 Aligned_cols=73 Identities=14% Similarity=0.194 Sum_probs=29.4
Q ss_pred HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 86 CDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKE 158 (559)
Q Consensus 86 Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkE 158 (559)
++++.++..+|..+..++..++.++..++..+..+..+|......++.+...|..++.++..++.+|..+++.
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433333334444444333333333333333333333333333333
No 28
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.31 E-value=0.0038 Score=69.24 Aligned_cols=35 Identities=9% Similarity=0.153 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 008630 174 SRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEI 208 (559)
Q Consensus 174 ~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei 208 (559)
.++...+..+++.+...+..+..+..+...++.++
T Consensus 333 ~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei 367 (562)
T PHA02562 333 NEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAI 367 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 29
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.28 E-value=0.0075 Score=70.39 Aligned_cols=181 Identities=15% Similarity=0.185 Sum_probs=104.4
Q ss_pred hhhHHHHHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHH
Q 008630 32 KTGQLLVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVD 111 (559)
Q Consensus 32 ~~~~~~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~ 111 (559)
.++.+=.-|...+...+-|+..|..-.-+++.+....+..-+-++..-.+.+.++-++.++-..++..+.++..+..+|.
T Consensus 323 hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie 402 (775)
T PF10174_consen 323 HIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIE 402 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555566666666666666666666666666666777777788888888888888888888888888888888
Q ss_pred HHHHHHhhhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 008630 112 ELQRQLGAKTEEVAREKELTE---------NLFKKIEKLSLDISHYKQLLADEKKE-KKCFLTKFEVFEENVSRLQEELT 181 (559)
Q Consensus 112 ~Leek~~kl~EEIee~kekle---------eL~~eIe~Le~eie~~e~eLee~EkE-keel~ek~e~leeEv~eLqekl~ 181 (559)
.|++.+...-.++...+.++. .+...++....+.+.+...|...-.. -.+..++++.++.++..+...+.
T Consensus 403 ~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~ 482 (775)
T PF10174_consen 403 NLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLE 482 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777777777777776666 34444444423322222222221110 11223333444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHhH
Q 008630 182 KKTEEVEEGRKLQEQLLQQIDFKSSEITKNK 212 (559)
Q Consensus 182 q~ekEIselr~~iq~LeQeLE~~~~Ei~kle 212 (559)
.++.++++...++..+....-.+.+...+..
T Consensus 483 ~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~ 513 (775)
T PF10174_consen 483 SLQKELSEKELQLEDAKEEASKLASSQEKKD 513 (775)
T ss_pred HHhhhhHHHHHHHHHhhhHHHHHhhccchhh
Confidence 4444544444444444444444444443333
No 30
>PRK11637 AmiB activator; Provisional
Probab=98.27 E-value=0.001 Score=72.29 Aligned_cols=8 Identities=13% Similarity=0.551 Sum_probs=3.4
Q ss_pred CCCCCCCc
Q 008630 544 PLTPEGFW 551 (559)
Q Consensus 544 p~TPpGFW 551 (559)
|-.|-.|+
T Consensus 419 ~vnP~~~l 426 (428)
T PRK11637 419 AVNPQPWL 426 (428)
T ss_pred EeChHHHh
Confidence 33444443
No 31
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.26 E-value=0.0019 Score=71.61 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHH
Q 008630 224 DKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQK 264 (559)
Q Consensus 224 kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k 264 (559)
..+..+......++.+++.+..........+..+.+++...
T Consensus 351 ~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~ 391 (562)
T PHA02562 351 QSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKI 391 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444455555544444
No 32
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.22 E-value=0.019 Score=66.81 Aligned_cols=179 Identities=22% Similarity=0.222 Sum_probs=117.2
Q ss_pred HHHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 008630 37 LVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIK---KKCDQLEEHEEKTKTLIAELNSHKKIVDEL 113 (559)
Q Consensus 37 ~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~---~~Qk~L~Ele~kI~~le~e~k~leerL~~L 113 (559)
-+||.-|++--=+|.+-.+.||+....-.+||..|..-=.-+-..+. .+..++.++-..|..+-=++.+.+++.+.|
T Consensus 251 k~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesL 330 (1243)
T KOG0971|consen 251 KAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESL 330 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35777888777788889999999999999999988754333322222 233457777778888888889999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 114 QRQLGAKTEEVAREKELTENLFKKIEKL--------SLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTE 185 (559)
Q Consensus 114 eek~~kl~EEIee~kekleeL~~eIe~L--------e~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ek 185 (559)
+.....+++.++++..-++=|..+++.- ...|..++..=..+++.+=.++.-...-......+...+-.+..
T Consensus 331 Q~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~s 410 (1243)
T KOG0971|consen 331 QQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNS 410 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhh
Confidence 8554444444444443333333333322 22222222222223333222222222226677778888888888
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Q 008630 186 EVEEGRKLQEQLLQQIDFKSSEITKNKQEF 215 (559)
Q Consensus 186 EIselr~~iq~LeQeLE~~~~Ei~kle~EL 215 (559)
++++++...++|..+++..+.-++-+++++
T Consensus 411 E~~eL~r~kE~Lsr~~d~aEs~iadlkEQV 440 (1243)
T KOG0971|consen 411 ELEELRRQKERLSRELDQAESTIADLKEQV 440 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988874
No 33
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=98.21 E-value=0.0056 Score=68.87 Aligned_cols=229 Identities=19% Similarity=0.238 Sum_probs=136.1
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhhhHHHHHHHhHHHhHHHHHHHHHHHhHhhhhH--HHHHHHHHHHHHHHHHHHHHHHhH
Q 008630 11 AVEENKTLKFDKAKLLQEQEEKTGQLLVKLESQRCEINELKQELEFKSKEVEGV--KEMQKGLIQLAQSKACEIKKKCDQ 88 (559)
Q Consensus 11 ~~~e~~~l~~~~~~l~~~~e~~~~~~~~~~~sl~~~~~~l~~~~~~k~~~v~~~--~el~~~l~~~~~~~~keL~~~Qk~ 88 (559)
+++|+++|+..+..+.-+-.+..+. -++|+.|+.++.++.+.+...-+.+..- .++++.......-+..+-..++.+
T Consensus 119 ~~~e~~~lk~~lee~~~el~~~k~q-q~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q 197 (629)
T KOG0963|consen 119 ASEENEELKEELEEVNNELADLKTQ-QVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQ 197 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999988777766333222222 3578899999999999888887755433 445555555555556666777888
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 008630 89 LEEHEEKTKTLIAELNSHKKIVDELQRQ----LGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFL- 163 (559)
Q Consensus 89 L~Ele~kI~~le~e~k~leerL~~Leek----~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~- 163 (559)
+..++.+|..+...+.-...++..+... ..-+..+|.-.-..++.+..+|..++.+.+.+..+++......+.-.
T Consensus 198 ~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~ 277 (629)
T KOG0963|consen 198 LEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKI 277 (629)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC
Confidence 8888888888888888888877777776 44555555555555555556655555555555555544332221110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 164 TKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF---EKEKQLLLDKVRGLEEKANELKKNF 240 (559)
Q Consensus 164 ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL---EkE~~el~kkie~l~ek~eeLq~ei 240 (559)
.-++....-+......|.++.++|...+.. +...++.....|..++.++ ..+++++..++... ..|+.++.++
T Consensus 278 ~~i~~~~~~L~~kd~~i~~L~~di~~~~~S---~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~EL 353 (629)
T KOG0963|consen 278 DDIDALGSVLNQKDSEIAQLSNDIERLEAS---LVEEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKEL 353 (629)
T ss_pred CchHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHH
Confidence 111111222333444555555555544432 3344455556666666665 44555554554444 5666666666
Q ss_pred HHHh
Q 008630 241 CEKS 244 (559)
Q Consensus 241 eelk 244 (559)
..|+
T Consensus 354 siLk 357 (629)
T KOG0963|consen 354 SILK 357 (629)
T ss_pred HHHH
Confidence 6664
No 34
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.21 E-value=0.009 Score=70.14 Aligned_cols=205 Identities=17% Similarity=0.156 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----------------------------
Q 008630 90 EEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL---------------------------- 141 (559)
Q Consensus 90 ~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L---------------------------- 141 (559)
..++..|=.+..++..+.....-.+.+..++.+|...+......|.-.-+.+
T Consensus 297 ~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralk 376 (1195)
T KOG4643|consen 297 ATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALK 376 (1195)
T ss_pred CChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHH
Confidence 4455566666666666666666666666666666666655544433322222
Q ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008630 142 ----------------SLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKS 205 (559)
Q Consensus 142 ----------------e~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~ 205 (559)
.+.++.+-.+.-.++++.+.+--+++.+++++.++...+.+++..--.+....+.++.+.....
T Consensus 377 llLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~ 456 (1195)
T KOG4643|consen 377 LLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVT 456 (1195)
T ss_pred HHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333333333444444444444444555555555555555555555555555555555444
Q ss_pred HHHHHhHHH---H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHH
Q 008630 206 SEITKNKQE---F----------EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEK 272 (559)
Q Consensus 206 ~Ei~kle~E---L----------EkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~ 272 (559)
........+ + ..+..++..++..+...++.-..+++.+......+...+.....++..++..+-.-.
T Consensus 457 ~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe 536 (1195)
T KOG4643|consen 457 RSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELE 536 (1195)
T ss_pred HhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433211 1 444445555555544444444444444444444444444444444333321111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 008630 273 KKRRDVIDAYKRLKSQYNYICA 294 (559)
Q Consensus 273 rKl~~l~~eyk~LKSqi~~L~~ 294 (559)
..+--+..+-..|-++|..||.
T Consensus 537 ~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 537 ELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHhhHHHHHHHHHHHHHHHHH
Confidence 2222222244445555655554
No 35
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.19 E-value=0.013 Score=61.14 Aligned_cols=58 Identities=26% Similarity=0.279 Sum_probs=24.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 008630 59 KEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQ 116 (559)
Q Consensus 59 ~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek 116 (559)
+.+.+.++..+-|.+.+-.....--.....+.++...++.+.....-+.+++..+..+
T Consensus 20 ~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~k 77 (294)
T COG1340 20 EEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEK 77 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444444433333
No 36
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.18 E-value=0.011 Score=69.38 Aligned_cols=17 Identities=35% Similarity=0.298 Sum_probs=10.7
Q ss_pred hhhccccccccccCCCC
Q 008630 424 IRGNLNKVMKEDVHDRP 440 (559)
Q Consensus 424 ~~~~~~~~~~~e~~~~~ 440 (559)
|.+.+|.-..|++-++|
T Consensus 564 Il~~~n~m~~GrVTF~P 580 (1200)
T KOG0964|consen 564 ILRKLNKMKGGRVTFMP 580 (1200)
T ss_pred HHHHHHhccCCeeEEee
Confidence 44555665557777776
No 37
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.18 E-value=0.026 Score=64.23 Aligned_cols=72 Identities=17% Similarity=0.109 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccc
Q 008630 232 KANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFGLTTDKM 303 (559)
Q Consensus 232 k~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~~~~~~~ 303 (559)
.+..|......++.++++....|+.|.++-..+.+...+|..+++.+...++.|+..++++-++|+=-.++.
T Consensus 588 q~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~ 659 (786)
T PF05483_consen 588 QMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKY 659 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344455556666777777778888888888888888889999999998888888888888888887444443
No 38
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.18 E-value=0.016 Score=69.07 Aligned_cols=37 Identities=32% Similarity=0.336 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008630 105 SHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL 141 (559)
Q Consensus 105 ~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L 141 (559)
.+.++...++.+..+..+.+.+....+..|.++|+..
T Consensus 388 ~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~ 424 (1293)
T KOG0996|consen 388 SLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKA 424 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344333333333333333333333333333
No 39
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.14 E-value=0.013 Score=72.88 Aligned_cols=149 Identities=21% Similarity=0.209 Sum_probs=67.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 117 LGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQ 196 (559)
Q Consensus 117 ~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~ 196 (559)
++...++++.++..+....-.|..++..+...+..|...+.+.++.+..+ ...+..+..++..++.+|+++...+..
T Consensus 907 Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~---ea~ie~~~~k~tslE~~ls~L~~~~~~ 983 (1822)
T KOG4674|consen 907 LRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLEL---EAKIESLHKKITSLEEELSELEKEIEN 983 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555555555555555555544444333 334444444444555555555544444
Q ss_pred HHHHH-----------hhhhHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHH
Q 008630 197 LLQQI-----------DFKSSEITKNKQEF---EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIE 262 (559)
Q Consensus 197 LeQeL-----------E~~~~Ei~kle~EL---EkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~ 262 (559)
+.-++ .....++..+..++ ..-..+....+.+++..+.............++.....|..+.+.|.
T Consensus 984 l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~ 1063 (1822)
T KOG4674|consen 984 LREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLI 1063 (1822)
T ss_pred HHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44332 22223333333332 23333333333333443333333333335555555555555555555
Q ss_pred HHHHHH
Q 008630 263 QKTAEL 268 (559)
Q Consensus 263 ~k~~el 268 (559)
....++
T Consensus 1064 kl~ee~ 1069 (1822)
T KOG4674|consen 1064 KLREEF 1069 (1822)
T ss_pred HHHHHH
Confidence 553333
No 40
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.14 E-value=0.028 Score=63.05 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHH
Q 008630 222 LLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQK 264 (559)
Q Consensus 222 l~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k 264 (559)
+...++.+....+.+.......+.++.....+++..+..+...
T Consensus 370 l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~ 412 (522)
T PF05701_consen 370 LPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTA 412 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444
No 41
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.13 E-value=0.026 Score=63.79 Aligned_cols=214 Identities=14% Similarity=0.169 Sum_probs=124.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH
Q 008630 82 IKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLD----------ISHYKQL 151 (559)
Q Consensus 82 L~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~e----------ie~~e~e 151 (559)
+......+..+...|+.+-..+..-..--.+.+.....+...+...+.....|..+++++... ...+..+
T Consensus 277 l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~leke 356 (569)
T PRK04778 277 LDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQ 356 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHH
Confidence 333444455555555555555544444455555556666666666666666666666666222 4455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH---HHHHHHHHHHHH-
Q 008630 152 LADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF---EKEKQLLLDKVR- 227 (559)
Q Consensus 152 Lee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL---EkE~~el~kkie- 227 (559)
|..+++.+..+...+......+..++..+..+.+++..+...+..+...+..+..+....+..+ ...+..+...++
T Consensus 357 L~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k 436 (569)
T PRK04778 357 LESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEK 436 (569)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665555555554444445555555555555555555555555555555544444444443 233333333222
Q ss_pred --------HHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008630 228 --------GLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKF 296 (559)
Q Consensus 228 --------~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~ 296 (559)
.....+..+..++..+..++..+...+..+..++......+---..+..++......|...|.| ..+|
T Consensus 437 ~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy-~nRf 512 (569)
T PRK04778 437 SNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY-ANRY 512 (569)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc
Confidence 2455667777788888888888888888777777777555555577777777777778877777 4444
No 42
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.035 Score=63.94 Aligned_cols=189 Identities=14% Similarity=0.176 Sum_probs=96.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 95 KTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVS 174 (559)
Q Consensus 95 kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~ 174 (559)
++.++.+.+..-++.+=.|+.+...+..|++-+..+++.|..+|.-+ +-.+-..+.+++.+...++.+..++.
T Consensus 417 r~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dv-------r~~~tt~kt~ie~~~~q~e~~isei~ 489 (1118)
T KOG1029|consen 417 RRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDV-------RVDITTQKTEIEEVTKQRELMISEID 489 (1118)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------eeccchHHHHHHHhhhHHHHHHHHHH
Confidence 44444455555555555555555555555555555555554444433 33333344444555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcch
Q 008630 175 RLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQ---EFEKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGM 251 (559)
Q Consensus 175 eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~---ELEkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e 251 (559)
+|+.+|.+..+.+-.+--..+.|..++.+.+.......+ +|+.......--...++..+..|..+.+....++..+.
T Consensus 490 qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n 569 (1118)
T KOG1029|consen 490 QLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFN 569 (1118)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 555555555555444445555555555554443333322 22211111111123344455666666666666677777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhC
Q 008630 252 DSNDKLLQEIEQKTAELMAEKKKRRDV-IDAYKRLKSQYNYICAKFG 297 (559)
Q Consensus 252 ~eieeL~eqL~~k~~el~~e~rKl~~l-~~eyk~LKSqi~~L~~k~~ 297 (559)
-.+.+|++.++.+ .-...++ +++|.+|+-.-......+|
T Consensus 570 ~qlkelk~~~~~q-------~lake~~yk~e~d~~ke~et~~lel~~ 609 (1118)
T KOG1029|consen 570 NQLKELKEDVNSQ-------QLAKEELYKNERDKLKEAETKALELIG 609 (1118)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777776666 3333333 3477777766666555555
No 43
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.02 E-value=0.049 Score=67.89 Aligned_cols=31 Identities=13% Similarity=0.152 Sum_probs=16.9
Q ss_pred HHHHhhhHHHHHHHhHHHhHHHHHHHHHHHh
Q 008630 28 EQEEKTGQLLVKLESQRCEINELKQELEFKS 58 (559)
Q Consensus 28 ~~e~~~~~~~~~~~sl~~~~~~l~~~~~~k~ 58 (559)
..+.+...|-..+..+...+..|+++...-.
T Consensus 304 ~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~ 334 (1486)
T PRK04863 304 AEQYRLVEMARELAELNEAESDLEQDYQAAS 334 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555555666666666665544433
No 44
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.99 E-value=0.049 Score=61.08 Aligned_cols=193 Identities=16% Similarity=0.196 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 008630 72 IQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL---SLDISHY 148 (559)
Q Consensus 72 ~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L---e~eie~~ 148 (559)
-..++++-...++++..++-+.....++........+.|..|+......-+|++.++....+|.+.|+-- ..+++..
T Consensus 258 ~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~m 337 (581)
T KOG0995|consen 258 PGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERM 337 (581)
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 3567788888888899999999888999998888888888888888888888888888888888877766 7788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-H---HH----------
Q 008630 149 KQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKN-K---QE---------- 214 (559)
Q Consensus 149 e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kl-e---~E---------- 214 (559)
..+...+..++..+..+++.+.+++.++..++...-++|...=.....+..+|-.--.+...- . ..
T Consensus 338 n~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~ 417 (581)
T KOG0995|consen 338 NLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKS 417 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchh
Confidence 888888888888888888888888888776655544444443333333333333331111111 0 00
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHH
Q 008630 215 -----FEKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQK 264 (559)
Q Consensus 215 -----LEkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k 264 (559)
|......+...+.+...+...|+.++..+...+++....++.+..+|...
T Consensus 418 ~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~ 472 (581)
T KOG0995|consen 418 YVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKA 472 (581)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 14555555566666666666677777766666666666666666666555
No 45
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.95 E-value=0.038 Score=62.57 Aligned_cols=50 Identities=22% Similarity=0.206 Sum_probs=35.8
Q ss_pred HHhhhHHHHHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHH
Q 008630 30 EEKTGQLLVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKA 79 (559)
Q Consensus 30 e~~~~~~~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~ 79 (559)
+..++.+-..+.++...+++|..--.+-+.+|...++.+..|-+.|...+
T Consensus 111 ~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~ 160 (569)
T PRK04778 111 ESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANR 160 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55566666777777777788777777777888888777777766655443
No 46
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.94 E-value=0.036 Score=57.34 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 008630 74 LAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLG 118 (559)
Q Consensus 74 ~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~ 118 (559)
.....-.++....+.+.+.....-.+++.+..|.+.+.|+...+.
T Consensus 97 ~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~he 141 (312)
T PF00038_consen 97 ERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHE 141 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhh
Confidence 333334444444445555555555555555555555555554443
No 47
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.93 E-value=0.055 Score=63.90 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008630 218 EKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFG 297 (559)
Q Consensus 218 E~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~ 297 (559)
+-.-+...+.+....+..++..+...+-++..++.++....-++...+.+-......++..++++..|+.++..|--++|
T Consensus 393 ~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~ 472 (1174)
T KOG0933|consen 393 EEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIG 472 (1174)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 34445555555555666666666666666666666666655566666555555566666666665555555555443333
No 48
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.92 E-value=0.089 Score=64.55 Aligned_cols=172 Identities=15% Similarity=0.180 Sum_probs=76.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-HH
Q 008630 117 LGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLAD-EKKEKKCFLTKFEVFEENVSRL----QEELTKKTEEVE-EG 190 (559)
Q Consensus 117 ~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee-~EkEkeel~ek~e~leeEv~eL----qekl~q~ekEIs-el 190 (559)
+..+..+++.+...+..|......++..+......|.. +......+..++...+++...+ ...+..+..++. ..
T Consensus 354 l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~ 433 (1201)
T PF12128_consen 354 LPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQQDEIREEKAERREQIEEEYQALEQELRQQS 433 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555554444444444433 2222233333332222222221 111112222222 22
Q ss_pred HHHHHHHHHHHhhhhHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHH
Q 008630 191 RKLQEQLLQQIDFKSSEITKNKQEF--EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAEL 268 (559)
Q Consensus 191 r~~iq~LeQeLE~~~~Ei~kle~EL--EkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el 268 (559)
...++.+..+...+..++..++.++ -.-..+....++.+...++..+.........+...+..+..++.+-+....+|
T Consensus 434 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 513 (1201)
T PF12128_consen 434 QEQLEELQEQREQLKSELAELKQQLKNPQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEEL 513 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444444445555555555554 11122222333444555555555555555555556666666666666663444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008630 269 MAEKKKRRDVIDAYKRLKSQ 288 (559)
Q Consensus 269 ~~e~rKl~~l~~eyk~LKSq 288 (559)
....+.+..++..+..|..+
T Consensus 514 ~~~~~~~~~~~~~~~~l~~~ 533 (1201)
T PF12128_consen 514 RQARRELEELRAQIAELQRQ 533 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555554443
No 49
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.92 E-value=0.067 Score=63.19 Aligned_cols=68 Identities=22% Similarity=0.219 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 88 QLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADE 155 (559)
Q Consensus 88 ~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~ 155 (559)
.+.+...++-.+++..+-|..+...|++++.++...+.+++...+.|..+.+.+..+.......++..
T Consensus 395 s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq 462 (1195)
T KOG4643|consen 395 SYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQ 462 (1195)
T ss_pred hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 56677777788888888888888888888888888888888888888888777755555555544443
No 50
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.90 E-value=0.16 Score=63.78 Aligned_cols=195 Identities=13% Similarity=0.135 Sum_probs=115.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--
Q 008630 97 KTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFE----VFE-- 170 (559)
Q Consensus 97 ~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e----~le-- 170 (559)
.....-...+...+..+..+...+..-|.....+++.+..++......+.+.+..+....+.++....++. ...
T Consensus 280 ~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~ 359 (1822)
T KOG4674|consen 280 STQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDS 359 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33333334455555555555666666666666666666655555533333333333333333222222222 210
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 008630 171 ----------ENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF---EKEKQLLLDKVRGLEEKANELK 237 (559)
Q Consensus 171 ----------eEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL---EkE~~el~kkie~l~ek~eeLq 237 (559)
.....+-..+....-.+..+......++++++...-++.++...| -.++.+....+...+..|.+.+
T Consensus 360 ~~~~~~~~~~s~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~ 439 (1822)
T KOG4674|consen 360 LSATGESSMVSEKAALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQ 439 (1822)
T ss_pred HHhhcccchhhhHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 000112234444555666677777777777777777777777776 6777777777788888888888
Q ss_pred HHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 238 KNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNY 291 (559)
Q Consensus 238 ~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~ 291 (559)
.....+..+++.....|..+...+..+.+.+.+-.+.+..+...++.|..++..
T Consensus 440 ~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~ 493 (1822)
T KOG4674|consen 440 ETKAELSEELDFSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVNV 493 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777777777777777777777777555555566666666666666666644
No 51
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.87 E-value=0.085 Score=59.28 Aligned_cols=34 Identities=35% Similarity=0.404 Sum_probs=27.0
Q ss_pred HHHHhhhHHHHHHHhHHHhHHHHHHHHHHHhHhh
Q 008630 28 EQEEKTGQLLVKLESQRCEINELKQELEFKSKEV 61 (559)
Q Consensus 28 ~~e~~~~~~~~~~~sl~~~~~~l~~~~~~k~~~v 61 (559)
..|.-+..++..|.+-..-|++|+.+|.....+.
T Consensus 52 ~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~ 85 (522)
T PF05701_consen 52 AAEREKAQALSELESAKRTVEELKLKLEKAQAEE 85 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477788889999999999999999887655443
No 52
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.85 E-value=0.084 Score=65.92 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhhhCCCCcc
Q 008630 283 KRLKSQYNYICAKFGLTTDK 302 (559)
Q Consensus 283 k~LKSqi~~L~~k~~~~~~~ 302 (559)
.....++..+|.++|.+.++
T Consensus 533 ~~~~~~~~~~~~~~~~~~~~ 552 (1486)
T PRK04863 533 QRAERLLAEFCKRLGKNLDD 552 (1486)
T ss_pred HHHHHHHHHHHHHhCCCCCC
Confidence 34555666777788876664
No 53
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.85 E-value=0.024 Score=63.64 Aligned_cols=81 Identities=16% Similarity=0.213 Sum_probs=41.5
Q ss_pred HHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHH
Q 008630 49 ELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREK 128 (559)
Q Consensus 49 ~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~k 128 (559)
.++.++..-..+|.+.+-......+.+..--..+-.....|.+++.++..+...++.++..+..|.....++..+|...+
T Consensus 110 ~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 110 KLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 33333333334444433333333333333334444445556666666666666666666666666666666666666555
Q ss_pred H
Q 008630 129 E 129 (559)
Q Consensus 129 e 129 (559)
.
T Consensus 190 ~ 190 (546)
T KOG0977|consen 190 K 190 (546)
T ss_pred H
Confidence 4
No 54
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.84 E-value=0.017 Score=57.09 Aligned_cols=167 Identities=23% Similarity=0.265 Sum_probs=102.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 109 IVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVE 188 (559)
Q Consensus 109 rL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIs 188 (559)
.+..++.++..+.-|---++....-...-|..++..-..+-.-|..|.+++..+++++...+.....+.+.+..+..+|-
T Consensus 20 ~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~ 99 (194)
T PF15619_consen 20 ELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELL 99 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444555555556667778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHH
Q 008630 189 EGRKLQEQLLQQIDFK-SSEITKNKQEFEKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAE 267 (559)
Q Consensus 189 elr~~iq~LeQeLE~~-~~Ei~kle~ELEkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~e 267 (559)
..+..+..|.+-.+.. -.+. .++..++..+..++..-...+..+..++..... .+ ..+
T Consensus 100 k~~~~l~~L~~L~~dknL~eR-----------eeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k---~~-------~rq 158 (194)
T PF15619_consen 100 KTKDELKHLKKLSEDKNLAER-----------EELQRKLSQLEQKLQEKEKKIQELEKQLELENK---SF-------RRQ 158 (194)
T ss_pred HHHHHHHHHHHHHHcCCchhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HH-------HHH
Confidence 8888888777754311 1111 112223333333333322222222222222211 22 235
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008630 268 LMAEKKKRRDVIDAYKRLKSQYNYICAKF 296 (559)
Q Consensus 268 l~~e~rKl~~l~~eyk~LKSqi~~L~~k~ 296 (559)
|..|.++..++..+++.|...|..|..++
T Consensus 159 l~~e~kK~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 159 LASEKKKHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66669999999999999999999988776
No 55
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.82 E-value=0.086 Score=64.70 Aligned_cols=11 Identities=45% Similarity=0.770 Sum_probs=5.4
Q ss_pred CCCchhhhhhc
Q 008630 394 PASSWRETRSR 404 (559)
Q Consensus 394 p~~~~~~~r~~ 404 (559)
|...|-..|.+
T Consensus 937 ~~~~~~~~~~~ 947 (1201)
T PF12128_consen 937 LAENWEELRSE 947 (1201)
T ss_pred hHHHHHHHHHh
Confidence 44455555444
No 56
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.82 E-value=0.13 Score=59.90 Aligned_cols=72 Identities=24% Similarity=0.278 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhhHHHHHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008630 23 AKLLQEQEEKTGQLLVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEE 94 (559)
Q Consensus 23 ~~l~~~~e~~~~~~~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~ 94 (559)
..|||+--.|-+.+..++.-|+.++-.++.++---.-|.+-..-+...|-+-.+....+...+..++.++..
T Consensus 19 e~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~ 90 (717)
T PF09730_consen 19 ESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKF 90 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666555556666666666666666665555555555555555555555554444444444444444433
No 57
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.81 E-value=0.07 Score=63.10 Aligned_cols=155 Identities=21% Similarity=0.239 Sum_probs=73.8
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 008630 36 LLVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQR 115 (559)
Q Consensus 36 ~~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Lee 115 (559)
+++.+..+...|+++++.++.+-.-+ ..--..|.+.-+. ++..-.+-+.+.+.++.+++.+..++.....
T Consensus 739 ~~~~~~~~~e~v~e~~~~Ike~~~~~-------k~~~~~i~~lE~~---~~d~~~~re~rlkdl~keik~~k~~~e~~~~ 808 (1174)
T KOG0933|consen 739 LLDDLKELLEEVEESEQQIKEKERAL-------KKCEDKISTLEKK---MKDAKANRERRLKDLEKEIKTAKQRAEESSK 808 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH---HhHhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666665544432222 1111222111111 2222233344444455555555555555555
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 116 QLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQE 195 (559)
Q Consensus 116 k~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq 195 (559)
...+...+.+.+.-..+++..++...++.+......+..++.++..+...+...+.++..++.++....+.+....+.+.
T Consensus 809 ~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~ 888 (1174)
T KOG0933|consen 809 ELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEIS 888 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 55555555555555555555555555555555555555555555555555555555555555555554444444444444
Q ss_pred HHHHH
Q 008630 196 QLLQQ 200 (559)
Q Consensus 196 ~LeQe 200 (559)
.+...
T Consensus 889 ~~~~~ 893 (1174)
T KOG0933|consen 889 GLLTS 893 (1174)
T ss_pred hhhhH
Confidence 44443
No 58
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.81 E-value=0.064 Score=56.10 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=20.6
Q ss_pred HhhhHHHHHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHH
Q 008630 31 EKTGQLLVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQL 74 (559)
Q Consensus 31 ~~~~~~~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~ 74 (559)
+|-+++...+.++....|+|-.+|+..-..+....+-..-++..
T Consensus 27 ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeinee 70 (294)
T COG1340 27 EKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEE 70 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544444444444433333333
No 59
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.80 E-value=0.072 Score=59.79 Aligned_cols=150 Identities=21% Similarity=0.179 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008630 65 KEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLI---AELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL 141 (559)
Q Consensus 65 ~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le---~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L 141 (559)
.||.-+|=+..+..+.++..+++..-++++.|...+ +.+.++++....|++-..+...=+.+.+.+-.+..+.++.+
T Consensus 220 ~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l 299 (581)
T KOG0995|consen 220 DELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEML 299 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 567778888888888999998888777777776433 45666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Q 008630 142 SLDISHYKQLLADEKKEKKCFLTKFEVF---EENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQE 214 (559)
Q Consensus 142 e~eie~~e~eLee~EkEkeel~ek~e~l---eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~E 214 (559)
.++++..+.+++.++.+.++|+.+++-. -++|.+.-.+..++..+|..+...+++|.+.+-....++...-.+
T Consensus 300 ~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~ 375 (581)
T KOG0995|consen 300 KSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKE 375 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 6666666666666666666666666554 455555555555566666666666666665555554444444433
No 60
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.78 E-value=0.066 Score=55.42 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=16.1
Q ss_pred HhhhHHHHHHHhHHHhHHHHHHHHHHHh
Q 008630 31 EKTGQLLVKLESQRCEINELKQELEFKS 58 (559)
Q Consensus 31 ~~~~~~~~~~~sl~~~~~~l~~~~~~k~ 58 (559)
++-+..+-||+.|+..-..|..++..-.
T Consensus 11 dRla~YIekVr~LE~~N~~Le~~i~~~~ 38 (312)
T PF00038_consen 11 DRLASYIEKVRFLEQENKRLESEIEELR 38 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3344445677777777777766655433
No 61
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.74 E-value=0.088 Score=64.03 Aligned_cols=258 Identities=16% Similarity=0.173 Sum_probs=130.8
Q ss_pred HhhhHHHHHHHh---HHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHh
Q 008630 31 EKTGQLLVKLES---QRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHE---EKTKTLIAELN 104 (559)
Q Consensus 31 ~~~~~~~~~~~s---l~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele---~kI~~le~e~k 104 (559)
-.+..++..+.+ .--.+++|+.+.+.+.++..+-+-....+.+.++.....++.++..-++.. ..+....+.+.
T Consensus 802 k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~ 881 (1294)
T KOG0962|consen 802 KEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQ 881 (1294)
T ss_pred HHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555 122456677667776666666666666666666666666666555433333 34444444555
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 008630 105 SHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQL----LADEKKEKKCFLTKFEVFEE--NVSRLQE 178 (559)
Q Consensus 105 ~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~e----Lee~EkEkeel~ek~e~lee--Ev~eLqe 178 (559)
-+++.+..|+.....+.-++..+...+..+...++...++....+.+ ...+++....+.+....+.. +....-.
T Consensus 882 qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~~~~~~~~~~ 961 (1294)
T KOG0962|consen 882 QLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQIYKLNECFE 961 (1294)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 55555555555555555555555555555555555554444444333 22222222222222222200 0000001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHH------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 008630 179 ELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQE------F--EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWG 250 (559)
Q Consensus 179 kl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~E------L--EkE~~el~kkie~l~ek~eeLq~eieelkekL~~~ 250 (559)
+.-.....++.++.....+...-+........+... + .-.+..++.++..+...+..+-.++.... +...
T Consensus 962 ~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld~Qi~~~~--~~~~ 1039 (1294)
T KOG0962|consen 962 QYGFDDLRIAQLSESEEHLEERDNEVNEIKQKIRNQYQRERNLKDNLTLRNLERKLKELERELSELDKQILEAD--IKSV 1039 (1294)
T ss_pred HHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHH
Confidence 111111112222222222222111111111111111 1 45556666777777777777766665553 6666
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008630 251 MDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFG 297 (559)
Q Consensus 251 e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~ 297 (559)
.+++..|..+...+ ......+..+.+.++++++.+...+.
T Consensus 1040 ~ee~~~L~~~~~~l-------~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1040 KEERVKLEEEREKL-------SSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred HHHHHHHHHHHHHh-------hhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 67777777777777 77888888888888888888776655
No 62
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.72 E-value=0.1 Score=62.75 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=17.0
Q ss_pred HHhhhHHHHHHHhHHHhHHHHHHHHHH
Q 008630 30 EEKTGQLLVKLESQRCEINELKQELEF 56 (559)
Q Consensus 30 e~~~~~~~~~~~sl~~~~~~l~~~~~~ 56 (559)
+.++..+.+.|+.++.+.+.++++...
T Consensus 507 ~~~~~~l~~~~~~~~eele~~q~~~~~ 533 (1317)
T KOG0612|consen 507 EAKKRKLEALVRQLEEELEDAQKKNDN 533 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666777777776666655433
No 63
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.70 E-value=0.11 Score=61.96 Aligned_cols=121 Identities=20% Similarity=0.209 Sum_probs=73.9
Q ss_pred HHhhhHHHHHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHH
Q 008630 30 EEKTGQLLVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEE------HEEKTKTLIAEL 103 (559)
Q Consensus 30 e~~~~~~~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~E------le~kI~~le~e~ 103 (559)
+-.+..+..+|.++...|--++..+..+..++...+.=.-+.+..++...+.+..+...|.+ +.......-.++
T Consensus 226 E~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl 305 (1141)
T KOG0018|consen 226 EACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRL 305 (1141)
T ss_pred hhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHH
Confidence 67777777888888888888888777777777766633334444444444444444444333 334444444555
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 104 NSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQ 150 (559)
Q Consensus 104 k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~ 150 (559)
...++.+...+.......+.|+..+..+..+....+.++.+++.-.+
T Consensus 306 ~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q 352 (1141)
T KOG0018|consen 306 EEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQ 352 (1141)
T ss_pred HHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666666666666666666666666666666666666555544444
No 64
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.69 E-value=0.06 Score=64.24 Aligned_cols=180 Identities=11% Similarity=0.089 Sum_probs=82.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 81 EIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKK 160 (559)
Q Consensus 81 eL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEke 160 (559)
.|+...+.....+.-|.+...++...++-|...++.......-+.....++.+|....+.|+-.+......-...++...
T Consensus 1571 aL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~ 1650 (1758)
T KOG0994|consen 1571 ALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAG 1650 (1758)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33334444444444444444444444444444443333333333333333333333333333333333333344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 161 CFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEFEKEKQLLLDKVRGLEEKANELKKNF 240 (559)
Q Consensus 161 el~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~ELEkE~~el~kkie~l~ek~eeLq~ei 240 (559)
-.+.+-...++.+..|+..+...+.=++..-.--....++.+++..+-..+ -..-...+..+.+|+.++..-+..+
T Consensus 1651 sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~L----l~~a~~kl~~l~dLe~~y~~~~~~L 1726 (1758)
T KOG0994|consen 1651 SAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKL----LGQANEKLDRLKDLELEYLRNEQAL 1726 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 444444444555555544443333222222222222223322222221111 2333444556666666777777777
Q ss_pred HHHhhhhhcchhhhHHHHHHHHHH
Q 008630 241 CEKSSKQGWGMDSNDKLLQEIEQK 264 (559)
Q Consensus 241 eelkekL~~~e~eieeL~eqL~~k 264 (559)
+-++.+|..++..+++++..|.++
T Consensus 1727 ~~~~aeL~~Le~r~~~vl~~I~~r 1750 (1758)
T KOG0994|consen 1727 EDKAAELAGLEKRVESVLDHINER 1750 (1758)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhh
Confidence 777777777777777777766654
No 65
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.66 E-value=0.069 Score=61.78 Aligned_cols=119 Identities=12% Similarity=0.112 Sum_probs=94.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 84 KKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFL 163 (559)
Q Consensus 84 ~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ 163 (559)
-+.+..+.++..+..+++.+..|+.+...|+..+..+.+-|......+.+...+|+.+.+++..+.+.|..+-.++..+.
T Consensus 89 iyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~ 168 (1265)
T KOG0976|consen 89 IYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIG 168 (1265)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHH
Confidence 34556778888888888888888888888888888888888888888888888888888888888888888877777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008630 164 TKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQID 202 (559)
Q Consensus 164 ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE 202 (559)
..+...-.++.++..++.++..++++..+++..+.+.+.
T Consensus 169 ~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~ 207 (1265)
T KOG0976|consen 169 EDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFK 207 (1265)
T ss_pred HHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666667777777777777777777777766666553
No 66
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.64 E-value=0.1 Score=59.54 Aligned_cols=73 Identities=15% Similarity=0.161 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 216 EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNY 291 (559)
Q Consensus 216 EkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~ 291 (559)
-.-+-++-+.|.-+++++...-.+...++.+|..+.+.+..-=.-.+++ |--..++=...+..|+.|-++++.
T Consensus 490 t~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dEl---ifrdAKkDe~~rkaYK~La~lh~~ 562 (594)
T PF05667_consen 490 TRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDEL---IFRDAKKDEAARKAYKLLASLHEN 562 (594)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHhhcCHHHHHHHHHHHHHHHH
Confidence 4445555566666666666555555555555555444333221111111 222234444566688888888876
No 67
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.63 E-value=0.063 Score=53.00 Aligned_cols=127 Identities=15% Similarity=0.180 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 008630 88 QLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL---SLDISHYKQLLADEKKEKKCFLT 164 (559)
Q Consensus 88 ~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L---e~eie~~e~eLee~EkEkeel~e 164 (559)
.+.+++..-+.+..+...+.-.+..+++-..++.++|+.++..+..+.+-+... ..++++++..+..++++...+..
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~a 88 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLA 88 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666677777777777777777888888777777665554444 66777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Q 008630 165 KFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQE 214 (559)
Q Consensus 165 k~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~E 214 (559)
+...++.+...|-.++-.+..+-..+....+.++.++..+......+..+
T Consensus 89 q~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Q 138 (193)
T PF14662_consen 89 QARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQ 138 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHH
Confidence 76666666666666666666666666666666666666666555555544
No 68
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.62 E-value=0.065 Score=63.71 Aligned_cols=79 Identities=19% Similarity=0.261 Sum_probs=44.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 008630 60 EVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKI 138 (559)
Q Consensus 60 ~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eI 138 (559)
+|....-=-.+|=..|.++...+..+.+.|..++.++..+++.+..+.-++..++.++.....+..+++.+.+.+..+|
T Consensus 677 e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~i 755 (1141)
T KOG0018|consen 677 EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRI 755 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555555555555556666666666666666665555555555555555555555555555555443
No 69
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.61 E-value=0.07 Score=56.35 Aligned_cols=71 Identities=21% Similarity=0.240 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhCCCCcc
Q 008630 227 RGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVI----DAYKRLKSQYNYICAKFGLTTDK 302 (559)
Q Consensus 227 e~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~----~eyk~LKSqi~~L~~k~~~~~~~ 302 (559)
+..+..+.+++.+...+..++..+...+..+..+|... .+.+...+ .+...|+..++.|+...|+.--+
T Consensus 226 ~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~-------~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~gw~~~~ 298 (325)
T PF08317_consen 226 EAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA-------EKIREECRGWTRSEVKRLKAKVDALEKLTGWKIVS 298 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhcCCCHHHHHHHHHHHHHHHHHHCcEEEE
Confidence 33333444444444444444444445555555555555 44433332 27788999999999999987655
Q ss_pred cc
Q 008630 303 MT 304 (559)
Q Consensus 303 ~~ 304 (559)
+.
T Consensus 299 ~~ 300 (325)
T PF08317_consen 299 IS 300 (325)
T ss_pred Ee
Confidence 43
No 70
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.60 E-value=0.041 Score=57.87 Aligned_cols=194 Identities=14% Similarity=0.168 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH------H---------------HHHHHHHH
Q 008630 92 HEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL------S---------------LDISHYKQ 150 (559)
Q Consensus 92 le~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L------e---------------~eie~~e~ 150 (559)
+..+-..+......++..+....+....+..++......+..+...-+.- . --++.++.
T Consensus 88 Ll~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~ 167 (306)
T PF04849_consen 88 LLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQE 167 (306)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHH
Confidence 33333444444444555555555555555556655555555544333222 1 12466677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH---HHHHHHHHHHHH
Q 008630 151 LLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF---EKEKQLLLDKVR 227 (559)
Q Consensus 151 eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL---EkE~~el~kkie 227 (559)
+|..++.+-..++.+...+..+-..++++-.++-. +-=.++.....++-.+..++..+..+. ..++..+...|-
T Consensus 168 Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~---dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqiv 244 (306)
T PF04849_consen 168 KLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVL---DCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIV 244 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHH---HHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777775444444444333321 112233333344444444444444443 466666667777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008630 228 GLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAK 295 (559)
Q Consensus 228 ~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k 295 (559)
+++.++..+-.+-+++...+....+....|..+|... +.|-.+...-+-..++++..+++|
T Consensus 245 dlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~el-------qdkY~E~~~mL~EaQEElk~lR~~ 305 (306)
T PF04849_consen 245 DLQQRCKQLAAENEELQQHLQASKESQRQLQAELQEL-------QDKYAECMAMLHEAQEELKTLRKR 305 (306)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhCC
Confidence 7777777777777777766666666666666665555 555555555555556666555543
No 71
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.59 E-value=0.31 Score=57.83 Aligned_cols=97 Identities=15% Similarity=0.184 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 008630 88 QLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL-------SLDISHYKQLLADEKKEKK 160 (559)
Q Consensus 88 ~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L-------e~eie~~e~eLee~EkEke 160 (559)
....+...|..+++.+..+.+....++....++..+...++-.+..|+.+|... ...+..+..++.+.++++.
T Consensus 266 ~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~ 345 (1200)
T KOG0964|consen 266 ESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELS 345 (1200)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555445555555555555555566666666666655 3333444445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 161 CFLTKFEVFEENVSRLQEELTKKT 184 (559)
Q Consensus 161 el~ek~e~leeEv~eLqekl~q~e 184 (559)
.+.=++..+.++-..+...|..++
T Consensus 346 ~I~Pky~~l~~ee~~~~~rl~~l~ 369 (1200)
T KOG0964|consen 346 KIEPKYNSLVDEEKRLKKRLAKLE 369 (1200)
T ss_pred HhhhHHHHHHhHHHHHHHHHHHHH
Confidence 555555555444444444444433
No 72
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.55 E-value=0.33 Score=57.11 Aligned_cols=182 Identities=20% Similarity=0.246 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHH
Q 008630 47 INELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAR 126 (559)
Q Consensus 47 ~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee 126 (559)
+..|++++...-++.-++-+.+.++-+.+--.+-.|.=.+=.-.=.+++-..+..++..+.+++++|+--++=+..|+++
T Consensus 278 qa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 278 QADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566655555555555555555544432222211111111111123445555555555556666655555555555554
Q ss_pred H--------HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 127 E--------KELTENLFKKIEKLSLDISHYKQLL-------ADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGR 191 (559)
Q Consensus 127 ~--------kekleeL~~eIe~Le~eie~~e~eL-------ee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr 191 (559)
+ .-....|.....+|...+..++... ..+.++.+.+..++.+++.--..|.+++-+++..|+.+.
T Consensus 358 kG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlk 437 (1243)
T KOG0971|consen 358 KGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLK 437 (1243)
T ss_pred cCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 2334445555555544444444322 234445555555555555555566666777777777777
Q ss_pred HHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHH
Q 008630 192 KLQEQLLQQIDFKSSEITKNKQEFEKEKQLLLDKVRGL 229 (559)
Q Consensus 192 ~~iq~LeQeLE~~~~Ei~kle~ELEkE~~el~kkie~l 229 (559)
.+++...--=+|. ..++-+.=++|..+..|+..|.++
T Consensus 438 EQVDAAlGAE~MV-~qLtdknlnlEekVklLeetv~dl 474 (1243)
T KOG0971|consen 438 EQVDAALGAEEMV-EQLTDKNLNLEEKVKLLEETVGDL 474 (1243)
T ss_pred HHHHHhhcHHHHH-HHHHhhccCHHHHHHHHHHHHHHH
Confidence 7776655443332 111111111244555555555443
No 73
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.48 E-value=0.13 Score=58.09 Aligned_cols=149 Identities=19% Similarity=0.255 Sum_probs=73.0
Q ss_pred hHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhHHHHHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHH
Q 008630 4 IQLQKQQAVEENKTLKFDKAKLLQEQEEKTGQLLVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIK 83 (559)
Q Consensus 4 ~~~~~~~~~~e~~~l~~~~~~l~~~~e~~~~~~~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~ 83 (559)
|.-.+.++..|=..|-.+|+--+ +|--.|.+.=.-|+..|+.|+.-+- .+...-+.+++ .++.
T Consensus 33 ir~sR~rEK~El~~LNDRLA~YI----ekVR~LEaqN~~L~~di~~lr~~~~---~~ts~ik~~ye----------~El~ 95 (546)
T KOG0977|consen 33 IRDSREREKKELQELNDRLAVYI----EKVRFLEAQNRKLEHDINLLRGVVG---RETSGIKAKYE----------AELA 95 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhcc---CCCcchhHHhh----------hhHH
Confidence 33444555555555555665555 3333333433444444555443321 12222233332 3344
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 84 KKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFL 163 (559)
Q Consensus 84 ~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ 163 (559)
...+.+.+.......++.++.-+...+..|..+..++........+.+......+..++.++..++.....++.++..++
T Consensus 96 ~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk 175 (546)
T KOG0977|consen 96 TARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLK 175 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555555555555555555555555555555555555555555555555555555555555553
Q ss_pred HHHHHH
Q 008630 164 TKFEVF 169 (559)
Q Consensus 164 ek~e~l 169 (559)
.+...+
T Consensus 176 ~en~rl 181 (546)
T KOG0977|consen 176 AENSRL 181 (546)
T ss_pred HHhhhh
Confidence 333333
No 74
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.11 Score=60.13 Aligned_cols=14 Identities=21% Similarity=0.043 Sum_probs=6.5
Q ss_pred ccCCCCccccccCC
Q 008630 366 FHSSSSGFIVTEKC 379 (559)
Q Consensus 366 ~~~~~~~~~~~~~~ 379 (559)
|..|-++++.+.+|
T Consensus 683 v~as~~~~~~~vky 696 (1118)
T KOG1029|consen 683 VDASAFNIHDTVKY 696 (1118)
T ss_pred cccccccccceEEE
Confidence 44444444444454
No 75
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.46 E-value=0.096 Score=51.85 Aligned_cols=71 Identities=20% Similarity=0.357 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008630 174 SRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEFEKEKQLLLDKVRGLEEKANELKKNFCEKS 244 (559)
Q Consensus 174 ~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~ELEkE~~el~kkie~l~ek~eeLq~eieelk 244 (559)
..|+.++..++.++......++.|...++...+...+.-..-.+...++...+..+..++..|...+.+..
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555566666666666655555554445555555666666666666666665543
No 76
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.44 E-value=0.38 Score=55.31 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=26.5
Q ss_pred hhhhhhhhhhhHHHHHHHH---HHhhhHHHHHHHhHHHhHHHHHHHHHHHh
Q 008630 11 AVEENKTLKFDKAKLLQEQ---EEKTGQLLVKLESQRCEINELKQELEFKS 58 (559)
Q Consensus 11 ~~~e~~~l~~~~~~l~~~~---e~~~~~~~~~~~sl~~~~~~l~~~~~~k~ 58 (559)
..+++..++.+..++...- -.-+...+.+|..|+..|.+|+..+....
T Consensus 20 lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~ 70 (617)
T PF15070_consen 20 LKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP 70 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 3445555555444443221 23334455678888888888876655433
No 77
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.44 E-value=0.35 Score=54.84 Aligned_cols=54 Identities=20% Similarity=0.217 Sum_probs=41.4
Q ss_pred HHhhhHHHHHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHH
Q 008630 30 EEKTGQLLVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIK 83 (559)
Q Consensus 30 e~~~~~~~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~ 83 (559)
+..++.+-..+.++...+++|..--..-+.+|.+.++.+..|-+.|...+-.+.
T Consensus 107 ~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G 160 (560)
T PF06160_consen 107 EEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYG 160 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 666677777888888888888888888888888888888888777766554443
No 78
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.42 E-value=0.29 Score=53.69 Aligned_cols=59 Identities=12% Similarity=0.095 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 222 LLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVID 280 (559)
Q Consensus 222 l~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~ 280 (559)
+...+.+....+..|.+.+..-+.++.++...-..|...|.....+...+..+..+.++
T Consensus 201 l~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~~re~~aa~~a 259 (420)
T COG4942 201 LAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEA 259 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444445555555555555555555555555553333333444443443
No 79
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.41 E-value=0.064 Score=54.72 Aligned_cols=13 Identities=38% Similarity=0.468 Sum_probs=8.2
Q ss_pred HHHHHHHHHhhh-C
Q 008630 285 LKSQYNYICAKF-G 297 (559)
Q Consensus 285 LKSqi~~L~~k~-~ 297 (559)
|=+.|+.+++.. |
T Consensus 176 ll~~yeri~~~~kg 189 (239)
T COG1579 176 LLSEYERIRKNKKG 189 (239)
T ss_pred HHHHHHHHHhcCCC
Confidence 335677777766 5
No 80
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=97.38 E-value=0.35 Score=53.43 Aligned_cols=157 Identities=13% Similarity=0.127 Sum_probs=109.6
Q ss_pred hHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhH
Q 008630 42 SQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKT 121 (559)
Q Consensus 42 sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~ 121 (559)
-+-..|+-||-..+.-.+++.++|+| .+.++++......++...+-++...+++..+.+.---.+..|+.......
T Consensus 268 ~i~~~i~~lk~~n~~l~e~i~ea~k~----s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kE 343 (622)
T COG5185 268 IINTDIANLKTQNDNLYEKIQEAMKI----SQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKE 343 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 34566777777777777888888765 46788888888888888888888888888887777777777776666666
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 122 EEVAREKELTENLFKKIEKL---SLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLL 198 (559)
Q Consensus 122 EEIee~kekleeL~~eIe~L---e~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~Le 198 (559)
+||.-++..+.+|-+.+.-- .+.++....+-+.+=.+++.+..+.+.+.+.|+.-...+...-+.+...=-+...|.
T Consensus 344 eei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~ 423 (622)
T COG5185 344 EEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLI 423 (622)
T ss_pred HHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665555555555444 667777777777777788888888888888888766665555555444444444444
Q ss_pred HHHh
Q 008630 199 QQID 202 (559)
Q Consensus 199 QeLE 202 (559)
++|-
T Consensus 424 ~~i~ 427 (622)
T COG5185 424 QNIT 427 (622)
T ss_pred HHhc
Confidence 4433
No 81
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.37 E-value=0.65 Score=56.32 Aligned_cols=65 Identities=18% Similarity=0.278 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 88 QLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLL 152 (559)
Q Consensus 88 ~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eL 152 (559)
.+.+....-+.++..+..++.....|-.....+..+.+...+..-++...+..++..+..++..+
T Consensus 575 ~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~ 639 (1317)
T KOG0612|consen 575 QIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETL 639 (1317)
T ss_pred HHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33444443444444444444444444444444444444444444444444444433343333333
No 82
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.32 E-value=0.18 Score=58.68 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008630 272 KKKRRDVIDAYKRLKSQYNYIC 293 (559)
Q Consensus 272 ~rKl~~l~~eyk~LKSqi~~L~ 293 (559)
...+..+-.|+..||..|..+.
T Consensus 635 ~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 635 QGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555555554443
No 83
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.30 E-value=0.057 Score=50.90 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=24.3
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 99 LIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLAD 154 (559)
Q Consensus 99 le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee 154 (559)
+.....-++.++..|+.....+-.+|..+..++..|...++.+...+......+.+
T Consensus 12 a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee 67 (143)
T PF12718_consen 12 AQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEE 67 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333344444444444444444444444444444444444444444444443
No 84
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.30 E-value=0.03 Score=52.78 Aligned_cols=59 Identities=22% Similarity=0.309 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Q 008630 157 KEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF 215 (559)
Q Consensus 157 kEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL 215 (559)
-+.+.+..+.+.++..+..+.....+++.+|..+...++.++.+++.+...+......+
T Consensus 7 ~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 7 LEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555555555555555545555554444444444444443
No 85
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.29 E-value=0.56 Score=53.99 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 158 EKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQ 199 (559)
Q Consensus 158 Ekeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQ 199 (559)
.+.+...+-..+++.+.+|+..+-.++++-.++...++.-++
T Consensus 154 t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~ 195 (617)
T PF15070_consen 154 TASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQH 195 (617)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHH
Confidence 444455555555666666666666666665555444444433
No 86
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=97.27 E-value=0.24 Score=49.26 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Q 008630 172 NVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF 215 (559)
Q Consensus 172 Ev~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL 215 (559)
-+..+...+..+++++..+.-..+.|.+++..+..++..+....
T Consensus 87 ~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 87 SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666666666666665443
No 87
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=97.26 E-value=0.16 Score=53.93 Aligned_cols=162 Identities=15% Similarity=0.155 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHH--------------HHHHHHHHHHHHHH
Q 008630 73 QLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEV--------------AREKELTENLFKKI 138 (559)
Q Consensus 73 ~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEI--------------ee~kekleeL~~eI 138 (559)
+++|+|..+|.-+.++|.....+.+.+-.....++++-..|+.+...+.-+. ..+...+.....+.
T Consensus 2 rKL~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~N 81 (319)
T PF09789_consen 2 RKLQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQN 81 (319)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHH
Confidence 3567777888888888888888888888888888877777777766555221 22223333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH---
Q 008630 139 EKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF--- 215 (559)
Q Consensus 139 e~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL--- 215 (559)
..|..++..+.+.|.+++...+-++.++..++-....+.-.-+- ...+.+..+++.....+..++..+
T Consensus 82 k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~---------~ere~lV~qLEk~~~q~~qLe~d~qs~ 152 (319)
T PF09789_consen 82 KKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFP---------HEREDLVEQLEKLREQIEQLERDLQSL 152 (319)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccc---------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555544442111111100000 223344444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 216 EKEKQLLLDKVRGLEEKANELKKNFCEK 243 (559)
Q Consensus 216 EkE~~el~kkie~l~ek~eeLq~eieel 243 (559)
-.|++++....+..+.++..|..+++.+
T Consensus 153 lDEkeEl~~ERD~yk~K~~RLN~ELn~~ 180 (319)
T PF09789_consen 153 LDEKEELVTERDAYKCKAHRLNHELNYI 180 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666777777777766655
No 88
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=97.22 E-value=0.075 Score=60.12 Aligned_cols=42 Identities=26% Similarity=0.254 Sum_probs=25.9
Q ss_pred CcchhhhhhhcccccccCCCCccccccCC-CCCCCCCCccccCC
Q 008630 351 NLDNEKKAKSVQTSSFHSSSSGFIVTEKC-PSNVKSAPIAGTKR 393 (559)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~~~~~~~ 393 (559)
+++..+..+. +.+.|++..+.+...|+| |++.++.++.|+-|
T Consensus 335 ~~S~~n~~~g-p~~~~~~s~~p~~ssp~v~P~~~~~S~slg~lr 377 (861)
T KOG1899|consen 335 SSSTTNNGKG-PRSTVQSSSSPNMSSPAVSPQHNWSSASLGTLR 377 (861)
T ss_pred ccccccccCC-ccccccCCCCCcCCCCCCCCccccccccccchh
Confidence 3333333333 777788777777777888 55566666666544
No 89
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.20 E-value=0.41 Score=50.55 Aligned_cols=71 Identities=13% Similarity=0.299 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCc
Q 008630 222 LLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFGLTTD 301 (559)
Q Consensus 222 l~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~~~~~ 301 (559)
+...|..++..|..|.+.+ .....+...--.++......+..|+.++..+.. .--.....||+.++-.+.
T Consensus 227 ~~shI~~Lr~EV~RLR~qL-------~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L~---~E~erreal~R~lsesEs 296 (310)
T PF09755_consen 227 LSSHIRSLRQEVSRLRQQL-------AASQQEHSEKMAQYLQEEKEIREENRRLQRKLQ---REVERREALCRHLSESES 296 (310)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4444445555554444444 333444444444444445666666777665544 666777889999985544
Q ss_pred c
Q 008630 302 K 302 (559)
Q Consensus 302 ~ 302 (559)
+
T Consensus 297 s 297 (310)
T PF09755_consen 297 S 297 (310)
T ss_pred H
Confidence 3
No 90
>PRK09039 hypothetical protein; Validated
Probab=97.19 E-value=0.084 Score=56.39 Aligned_cols=48 Identities=17% Similarity=0.170 Sum_probs=27.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHH
Q 008630 78 KACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVA 125 (559)
Q Consensus 78 ~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIe 125 (559)
++.++..+..+|.++..+|..+-.-+.+-..+...|+..+..+..+++
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~ 91 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLS 91 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455666666666666666666555555555555555544444444444
No 91
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.18 E-value=0.84 Score=53.78 Aligned_cols=134 Identities=8% Similarity=0.071 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH---HHHHHHH
Q 008630 146 SHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF---EKEKQLL 222 (559)
Q Consensus 146 e~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL---EkE~~el 222 (559)
++.+.+.-..++..+.+++++..++.+-..|.+++-+..++++..+..++........+...+..+..+. +...+..
T Consensus 413 ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~ 492 (980)
T KOG0980|consen 413 EEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQ 492 (980)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3444444445555556666666667777777777777777777777777777777777766666666554 5666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 008630 223 LDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQE----IEQKTAELMAEKKKRRDVI 279 (559)
Q Consensus 223 ~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eq----L~~k~~el~~e~rKl~~l~ 279 (559)
.+.++.++.++..+.-+++.++..+....++......+ +..+|.++.....++.++.
T Consensus 493 ~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e~~ 553 (980)
T KOG0980|consen 493 AKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREEERE 553 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 66667777777777777777776666666555444444 4445555555555443333
No 92
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.14 E-value=1.1 Score=54.29 Aligned_cols=77 Identities=8% Similarity=0.183 Sum_probs=40.2
Q ss_pred HHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 008630 38 VKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQ 114 (559)
Q Consensus 38 ~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Le 114 (559)
+.|+|-..+.+.+-+-|++.-..-+++..-+++++....--...+..-.++|..+.+.|+.+.+....--..|+.+-
T Consensus 1422 ~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA 1498 (1758)
T KOG0994|consen 1422 TQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVA 1498 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 44444444555544445544455555555555555555544555555556666666666666554443333333333
No 93
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.13 E-value=0.94 Score=53.42 Aligned_cols=181 Identities=20% Similarity=0.200 Sum_probs=78.5
Q ss_pred hhhhhhHHHHHHHHHHhhhHHHHHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 008630 16 KTLKFDKAKLLQEQEEKTGQLLVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEK 95 (559)
Q Consensus 16 ~~l~~~~~~l~~~~e~~~~~~~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~k 95 (559)
..|+..+..++.+.-..+.+.-..|.-+++..++-++...+-..+.. -|++-|.|+.-+.. .....+..+.+.+.+
T Consensus 343 ~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~e---qLr~elaql~a~r~-q~eka~~~~ee~e~~ 418 (980)
T KOG0980|consen 343 AQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQE---QLRNELAQLLASRT-QLEKAQVLVEEAENK 418 (980)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHhHHHH
Confidence 33333444444444445555555555566665555544333333332 23333333322111 112222223444444
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 96 TKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSR 175 (559)
Q Consensus 96 I~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~e 175 (559)
.-..++..+-+.+....|-+.+..+.........++......++.++.+...+...|+.+..+-.++..+.+...+-+..
T Consensus 419 ~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~ 498 (980)
T KOG0980|consen 419 ALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALES 498 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 176 LQEELTKKTEEVEEGRKLQEQLLQQ 200 (559)
Q Consensus 176 Lqekl~q~ekEIselr~~iq~LeQe 200 (559)
+.+++..+.-++..+...+..+.+.
T Consensus 499 l~~El~~l~~e~~~lq~~~~~~~qs 523 (980)
T KOG0980|consen 499 LRQELALLLIELEELQRTLSNLAQS 523 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4444444444444444444444333
No 94
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.12 E-value=0.77 Score=52.17 Aligned_cols=207 Identities=16% Similarity=0.188 Sum_probs=102.6
Q ss_pred HHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Q 008630 85 KCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL----------SLDISHYKQLLAD 154 (559)
Q Consensus 85 ~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L----------e~eie~~e~eLee 154 (559)
....+..+...|+.+=..+..--.--.+.......+.+.|.........|..+++++ ......+..+|..
T Consensus 276 ~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~ 355 (560)
T PF06160_consen 276 VEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKE 355 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 333444444444444443333333334455555666666666666666666666666 3333444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH---HHHHHHHHHHHH----
Q 008630 155 EKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF---EKEKQLLLDKVR---- 227 (559)
Q Consensus 155 ~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL---EkE~~el~kkie---- 227 (559)
+.+....+...+.....-+..+...+..+.+.+......+..+...+..+..+=..-+..+ ...+..+..+++
T Consensus 356 l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nL 435 (560)
T PF06160_consen 356 LEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNL 435 (560)
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5555555544444443333334444444444444444444444444433333333333333 333333334442
Q ss_pred -----HHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 228 -----GLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNY 291 (559)
Q Consensus 228 -----~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~ 291 (559)
+....+......+..+...+......+..+..++......+-.-..+..++.....+....|-|
T Consensus 436 PGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~iQY 504 (560)
T PF06160_consen 436 PGLPEDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNATLAEQLIQY 504 (560)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344556666666667777777777777776666666444444455555555544444444443
No 95
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.09 E-value=0.87 Score=52.41 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=9.8
Q ss_pred CCCCCcccccCChhhhh
Q 008630 408 GGPDPHDDFLDTPFENI 424 (559)
Q Consensus 408 ~~~d~~d~~~d~~~~~~ 424 (559)
|+.-|. |+|||+-++
T Consensus 573 ~~~~p~--iiD~p~~~l 587 (650)
T TIGR03185 573 GRRLPV--IIDTPLGRL 587 (650)
T ss_pred CCCCCE--EEcCCcccc
Confidence 344565 789988554
No 96
>PRK09039 hypothetical protein; Validated
Probab=97.09 E-value=0.084 Score=56.38 Aligned_cols=12 Identities=17% Similarity=0.551 Sum_probs=6.6
Q ss_pred CCCCCCCCCCCc
Q 008630 320 RNPIPFPDKHSD 331 (559)
Q Consensus 320 ~~~~~~~~~~~~ 331 (559)
++.|-|+.-++.
T Consensus 223 ~~~vlF~~gsa~ 234 (343)
T PRK09039 223 QSEVLFPTGSAE 234 (343)
T ss_pred cCCceeCCCCcc
Confidence 445667655553
No 97
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.93 Score=52.62 Aligned_cols=125 Identities=19% Similarity=0.164 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008630 170 EENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF---EKEKQLLLDKVRGLEEKANELKKNFCEKSSK 246 (559)
Q Consensus 170 eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL---EkE~~el~kkie~l~ek~eeLq~eieelkek 246 (559)
-..++.|......++.+|..+..+...+...+-.+......+.... ..+...+...++......-.+......++.+
T Consensus 495 ~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~ 574 (698)
T KOG0978|consen 495 NQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIE 574 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666666666666655555555443 4444444455555555555555555555556
Q ss_pred hhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008630 247 QGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICA 294 (559)
Q Consensus 247 L~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~ 294 (559)
++.....++.+..++.....+|..+..++.-+..++..|+..+..+-+
T Consensus 575 ~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~ 622 (698)
T KOG0978|consen 575 LEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKK 622 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666666666677777777666666688888888888888877776544
No 98
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.08 E-value=0.9 Score=52.32 Aligned_cols=47 Identities=15% Similarity=0.364 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 008630 69 KGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQR 115 (559)
Q Consensus 69 ~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Lee 115 (559)
..+...+..+.+++...+..+..+...+..+.+.+..++.++..+..
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666666666666666666666666666666665555
No 99
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.07 E-value=1 Score=52.67 Aligned_cols=41 Identities=24% Similarity=0.328 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 008630 77 SKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQL 117 (559)
Q Consensus 77 ~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~ 117 (559)
.+...|......|+++.....++.++...+.+.+.++-++.
T Consensus 166 ~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~ 206 (1265)
T KOG0976|consen 166 MIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKF 206 (1265)
T ss_pred HHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555566665555555555555555544443
No 100
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.06 E-value=0.94 Score=52.17 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008630 252 DSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFG 297 (559)
Q Consensus 252 ~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~ 297 (559)
....-|+..-....+.|..|..+..+.+.+|..++-.++.+-.++.
T Consensus 704 ~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~ 749 (961)
T KOG4673|consen 704 IQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRAN 749 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3334455555666667777799999999999999999999888887
No 101
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.05 E-value=1.2 Score=53.24 Aligned_cols=14 Identities=21% Similarity=0.501 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhhhC
Q 008630 284 RLKSQYNYICAKFG 297 (559)
Q Consensus 284 ~LKSqi~~L~~k~~ 297 (559)
.++..++.+.+++|
T Consensus 699 ~~~~~l~~~~~~~~ 712 (908)
T COG0419 699 QLREELEELLKKLG 712 (908)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333334444444
No 102
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.04 E-value=1.4 Score=55.10 Aligned_cols=226 Identities=7% Similarity=0.025 Sum_probs=106.8
Q ss_pred HHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 008630 39 KLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCD--QLEEHEEKTKTLIAELNSHKKIVDELQRQ 116 (559)
Q Consensus 39 ~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk--~L~Ele~kI~~le~e~k~leerL~~Leek 116 (559)
|-.-.+.+|.+|...+..--.+++....-...|-+.+..+..++...=. .|..--..+......+......+..+...
T Consensus 736 R~~~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~ 815 (1353)
T TIGR02680 736 RERARLRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARK 815 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444443333344443333333333333333333332221 23333334444444444555555555544
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 008630 117 LGAKTEEVAREKELTENLFKKIEKL--SLDISHYKQLLADEKKEKKCFLTKFEVF---EENVSRLQEELTKKTEEVEEGR 191 (559)
Q Consensus 117 ~~kl~EEIee~kekleeL~~eIe~L--e~eie~~e~eLee~EkEkeel~ek~e~l---eeEv~eLqekl~q~ekEIselr 191 (559)
.......+......+..+...+..- ...+......|..+...+..+...+..+ ...+...+..+..++.++...+
T Consensus 816 l~~a~~~~~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL~~y~~~l~~l~~~~~~L~~A~~~~~~a~~~le~ae~~l~~~~ 895 (1353)
T TIGR02680 816 AAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLALKRFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAA 895 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443332211 4445555555555555555554444444 4444444444444444444444
Q ss_pred HHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHH
Q 008630 192 KLQEQLLQQIDFKSSEITKNKQEFEKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQK 264 (559)
Q Consensus 192 ~~iq~LeQeLE~~~~Ei~kle~ELEkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k 264 (559)
.....+..++......+..+...+.....++..+++.++..+..+..++..+...+......+..+..++...
T Consensus 896 ~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~~~a 968 (1353)
T TIGR02680 896 EDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKRAEA 968 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443333335666666666666666666666666666666666666666666444
No 103
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.00 E-value=1.1 Score=51.80 Aligned_cols=109 Identities=14% Similarity=0.163 Sum_probs=87.8
Q ss_pred HHhhhHHHHHHHhHHHhHHHHHHHHHHHhHhhh-hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHH
Q 008630 30 EEKTGQLLVKLESQRCEINELKQELEFKSKEVE-GVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKK 108 (559)
Q Consensus 30 e~~~~~~~~~~~sl~~~~~~l~~~~~~k~~~v~-~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~lee 108 (559)
-++...+..+|.+++...+...+.+.+.-+++. .....+.+.+++.-.+...++.+....+.+.+.+..+.+++...+.
T Consensus 100 ~dr~~~~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~ 179 (716)
T KOG4593|consen 100 VDRKHKLLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEM 179 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778889999888888888888888877 6778888888999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 008630 109 IVDELQRQLGAKTEEVAREKELTENLFKKI 138 (559)
Q Consensus 109 rL~~Leek~~kl~EEIee~kekleeL~~eI 138 (559)
++..+...+.....++.+...++....+.+
T Consensus 180 ~~~~~~s~l~~~eke~~~~~~ql~~~~q~~ 209 (716)
T KOG4593|consen 180 RAKRLHSELQNEEKELDRQHKQLQEENQKI 209 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887777777666666655555544443
No 104
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.97 E-value=1 Score=52.53 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008630 272 KKKRRDVIDAYKRLKSQYNYICAKFG 297 (559)
Q Consensus 272 ~rKl~~l~~eyk~LKSqi~~L~~k~~ 297 (559)
+|.+......+..=..+|..|..|+-
T Consensus 628 krq~ei~~~~~~~~d~ei~~lk~ki~ 653 (697)
T PF09726_consen 628 KRQLEIAQGQLRKKDKEIEELKAKIA 653 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444555443
No 105
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.96 E-value=0.46 Score=47.04 Aligned_cols=112 Identities=16% Similarity=0.081 Sum_probs=57.1
Q ss_pred HHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 008630 101 AELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADE---KKEKKCFLTKFEVFEENVSRLQ 177 (559)
Q Consensus 101 ~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~---EkEkeel~ek~e~leeEv~eLq 177 (559)
+-+.-|+..=..|.....++...++-....-..|...|..|...+..++..+... +++++.++.-...+++....|.
T Consensus 8 ~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~ 87 (193)
T PF14662_consen 8 SCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLL 87 (193)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555555555555555555555555555544444444433332 4555555555555555566665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhH
Q 008630 178 EELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNK 212 (559)
Q Consensus 178 ekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle 212 (559)
.+-.+++++.--+-..++.|+.+...+..++..+.
T Consensus 88 aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk 122 (193)
T PF14662_consen 88 AQARQLEKEQQSLVAEIETLQEENGKLLAERDGLK 122 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHH
Confidence 55555555555555555555555444444444433
No 106
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.94 E-value=0.49 Score=47.01 Aligned_cols=62 Identities=19% Similarity=0.275 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 224 DKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYI 292 (559)
Q Consensus 224 kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L 292 (559)
.+.+.....+..+...+.+....-...+..+..|...++.. ..++...+.+|..+++.++..
T Consensus 137 q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~Ddl-------E~kl~~~k~ky~~~~~eLD~~ 198 (205)
T KOG1003|consen 137 QKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDL-------EEKLEEAKEKYEEAKKELDET 198 (205)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHH-------HHhhHHHHHHHHHHHHHHHHH
Confidence 33333333344443333333333344444455555555555 555555566666666665543
No 107
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=96.93 E-value=0.89 Score=50.28 Aligned_cols=78 Identities=15% Similarity=0.182 Sum_probs=43.2
Q ss_pred hhHHHHHHhhhhhhhhhhhHHHHHHHH---HHhhhHHHHHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHH
Q 008630 3 QIQLQKQQAVEENKTLKFDKAKLLQEQ---EEKTGQLLVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKA 79 (559)
Q Consensus 3 ~~~~~~~~~~~e~~~l~~~~~~l~~~~---e~~~~~~~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~ 79 (559)
+..++..|.++|.|.|-.-+-.|-++. +.+|-.|--.=.-|+++|.+||-+.-.---=|+=-.+|-.+.=.||+.|-
T Consensus 300 eqs~EslqpleedmaLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY 379 (527)
T PF15066_consen 300 EQSFESLQPLEEDMALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKY 379 (527)
T ss_pred HhhhhccCCcHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHh
Confidence 345778888999999988666666543 55555555444456666666664433322233333333333333333333
Q ss_pred H
Q 008630 80 C 80 (559)
Q Consensus 80 k 80 (559)
+
T Consensus 380 ~ 380 (527)
T PF15066_consen 380 R 380 (527)
T ss_pred H
Confidence 3
No 108
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.91 E-value=0.69 Score=48.95 Aligned_cols=117 Identities=20% Similarity=0.216 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 008630 92 HEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVF-E 170 (559)
Q Consensus 92 le~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~l-e 170 (559)
+..+..=+++..+.++.=...|++....+..+...+...++.+..-+..+......+..++..++....++ ... .
T Consensus 133 l~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~----~~~D~ 208 (325)
T PF08317_consen 133 LEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEI----ESCDQ 208 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhcCH
Confidence 44444555555555555555555444444444444444444444333333333333333333322222221 111 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhH
Q 008630 171 ENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNK 212 (559)
Q Consensus 171 eEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle 212 (559)
.++..++..+.....+|+..+..+..++.++..+...+....
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~ 250 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELE 250 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555544444444
No 109
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.88 E-value=0.00025 Score=83.58 Aligned_cols=65 Identities=28% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008630 77 SKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL 141 (559)
Q Consensus 77 ~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L 141 (559)
.+..++....+.|.+.+..+..+...+..+...|..+...+..-+..-..+...+..+...++.+
T Consensus 212 kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L 276 (859)
T PF01576_consen 212 KLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQL 276 (859)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555444443333333333333333333333
No 110
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.86 E-value=1 Score=49.44 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHH
Q 008630 220 QLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQ 259 (559)
Q Consensus 220 ~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~e 259 (559)
..+...+...+.++++|......|+..|...+....+-++
T Consensus 213 ~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~~re 252 (420)
T COG4942 213 AQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKARE 252 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555555555555544444443333
No 111
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.84 E-value=1.3 Score=50.46 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=18.4
Q ss_pred HHhhhHHHHHHHhHHHhHHHHH
Q 008630 30 EEKTGQLLVKLESQRCEINELK 51 (559)
Q Consensus 30 e~~~~~~~~~~~sl~~~~~~l~ 51 (559)
|+|-.++.-=+++-|.+||-|-
T Consensus 58 e~k~k~~~~llK~yQ~EiD~Lt 79 (629)
T KOG0963|consen 58 EDKLKMVNPLLKSYQSEIDNLT 79 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888898888875
No 112
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.81 E-value=1.6 Score=50.98 Aligned_cols=91 Identities=20% Similarity=0.089 Sum_probs=55.5
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 008630 35 QLLVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQ 114 (559)
Q Consensus 35 ~~~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Le 114 (559)
+-.+|-..+..+|.+|+.+++..--+++-.+.=-.+|.+..+-.....+....+...+...|+++...=..+=.--.+|+
T Consensus 24 esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselE 103 (717)
T PF09730_consen 24 ESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELE 103 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 33477788888999999998888888887777777777776666666555555555555555554433333333333344
Q ss_pred HHHhhhHHHHH
Q 008630 115 RQLGAKTEEVA 125 (559)
Q Consensus 115 ek~~kl~EEIe 125 (559)
+..-.+.-.+.
T Consensus 104 eENislQKqvs 114 (717)
T PF09730_consen 104 EENISLQKQVS 114 (717)
T ss_pred HHHHHHHHHHH
Confidence 43333333333
No 113
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.80 E-value=0.83 Score=48.30 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHH
Q 008630 105 SHKKIVDELQRQLGAKTEEVAREK 128 (559)
Q Consensus 105 ~leerL~~Leek~~kl~EEIee~k 128 (559)
.|+++++.|++....+..|...+.
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLK 187 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444443333333333333
No 114
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.80 E-value=0.36 Score=45.68 Aligned_cols=73 Identities=25% Similarity=0.178 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 91 EHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFL 163 (559)
Q Consensus 91 Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ 163 (559)
.+.++.+....+.-+++.++..|+..+.-..+..+......+.....|..|...+..+...|..++.++.-++
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLR 79 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555554444444444444444444444444444444444444444433333333
No 115
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.72 E-value=2 Score=52.84 Aligned_cols=235 Identities=20% Similarity=0.134 Sum_probs=129.7
Q ss_pred HHhh-hHHHHHHHhHHHhHHHHHHHH-------------------------HHHhHhhhhHHHHHHHHHHHHHHHHHHHH
Q 008630 30 EEKT-GQLLVKLESQRCEINELKQEL-------------------------EFKSKEVEGVKEMQKGLIQLAQSKACEIK 83 (559)
Q Consensus 30 e~~~-~~~~~~~~sl~~~~~~l~~~~-------------------------~~k~~~v~~~~el~~~l~~~~~~~~keL~ 83 (559)
..++ ++|+..|..|+.+|+....-+ .+++.+-++.-++-..|.-.|.+....+.
T Consensus 629 ~sgt~~~~~~~le~l~~eie~~rk~l~~lq~~s~~Y~k~Ie~~~~~~~CplC~r~f~~eee~ef~~~l~~~i~s~p~~~~ 708 (1294)
T KOG0962|consen 629 ESGTIDEYLDLLERLKGEIEKARKDLAMLQGRSALYRKFIEIACRSHCCPLCQRSFTTEEEVEFIKKLESKIDSAPDKLE 708 (1294)
T ss_pred hccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCCCccCCccchHHHHHHHHHHHHHHhccchhHH
Confidence 5566 788889999999998876551 11111111113333333333333333333
Q ss_pred HHHhHH-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-------------HH
Q 008630 84 KKCDQL-------EEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL-------------SL 143 (559)
Q Consensus 84 ~~Qk~L-------~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L-------------e~ 143 (559)
..-..+ ..+..-+-...+.++.+.+.+..+..++....+++..+.........-++.+ -.
T Consensus 709 ~~~~~l~k~~k~~e~l~~~~~~~~~~~~l~~~~i~e~~~~l~~~~~el~~~~~~~e~~~~~l~~~~~~~~~~~~l~~~~~ 788 (1294)
T KOG0962|consen 709 EAEVELSKEEKIFEILLKLKPTFGSIIKLIDKEIPELEKELQEVYEELGDLSEEEEDDEKLLDTIDAAEESAETLQTDVT 788 (1294)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHhcccchhHHhHHHHhhhhH
Confidence 222222 2222223334446677777777777777777777777766666655555544 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Q 008630 144 DISHYKQLLADEKKEKKCFLTKFEVF----------EENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQ 213 (559)
Q Consensus 144 eie~~e~eLee~EkEkeel~ek~e~l----------eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~ 213 (559)
.++.....++.....++++..++... +.+...+++.+-...++++..+...+.-...+.....-...+..
T Consensus 789 ~~e~~~~d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~ 868 (1294)
T KOG0962|consen 789 VLERFLKDLKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKE 868 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666666666666666552 55555666666666666666665555444444433332222222
Q ss_pred H---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHH
Q 008630 214 E---F---EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQK 264 (559)
Q Consensus 214 E---L---EkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k 264 (559)
. + -.....++..+.++++.+..+.+.+.++...+..+...+....+..+.+
T Consensus 869 ~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~ 925 (1294)
T KOG0962|consen 869 EKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEEL 925 (1294)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHH
Confidence 2 1 3444555566666667777777777777777666666666665555555
No 116
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=1.5 Score=51.46 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHh
Q 008630 187 VEEGRKLQEQLLQQIDFKSSEITKN 211 (559)
Q Consensus 187 Iselr~~iq~LeQeLE~~~~Ei~kl 211 (559)
+++..++.+.++.++.....++..+
T Consensus 801 l~e~~~~l~~~q~e~~~~keq~~t~ 825 (970)
T KOG0946|consen 801 LSEESTRLQELQSELTQLKEQIQTL 825 (970)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444333
No 117
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.69 E-value=0.36 Score=44.65 Aligned_cols=67 Identities=22% Similarity=0.330 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 170 EENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEFEKEKQLLLDKVRGLEEKANEL 236 (559)
Q Consensus 170 eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~ELEkE~~el~kkie~l~ek~eeL 236 (559)
-+.+..+...+..+..+|..++...+.....+......-...+..|++++.++..+++++...=.-|
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lL 124 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLL 124 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444555555444544444443333333333333555555555555544433333
No 118
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=96.63 E-value=1.5 Score=49.59 Aligned_cols=219 Identities=16% Similarity=0.173 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 71 LIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGA--KTEEVAREKELTENLFKKIEKLSLDISHY 148 (559)
Q Consensus 71 l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~k--l~EEIee~kekleeL~~eIe~Le~eie~~ 148 (559)
|.+.+...-..+....+.|.++.........++..++-++.+|+.-.-+ --++|+....++.+..+=.+.+...+.-+
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e~i~~~~~~~~~~L 238 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEKLRELSQNALAAL 238 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 4455555556666666666666666666666666666666666544221 11122222222222222111111111111
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH--
Q 008630 149 -----------KQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF-- 215 (559)
Q Consensus 149 -----------e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL-- 215 (559)
-..|......+..+ +...+..+.+.+..+...+.+....+......++.--..+...+.++
T Consensus 239 ~~~~~~~~~~~~~~l~~~~~~l~~~------~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~ 312 (563)
T TIGR00634 239 RGDVDVQEGSLLEGLGEAQLALASV------IDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQ 312 (563)
T ss_pred hCCccccccCHHHHHHHHHHHHHHh------hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 11122211121111 23334444444444444444444444444444444444444444443
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 008630 216 -EKEKQLLLDKVRGLEEKANELKKNFCEK---SSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVI-DAYKRLKSQYN 290 (559)
Q Consensus 216 -EkE~~el~kkie~l~ek~eeLq~eieel---kekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~-~eyk~LKSqi~ 290 (559)
..-+..+-..++++...++.++.++..+ ...+..++.++..+..++... ...++..+ ..-..|...+.
T Consensus 313 l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~-------a~~Ls~~R~~~a~~l~~~v~ 385 (563)
T TIGR00634 313 IKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKA-------AVALSLIRRKAAERLAKRVE 385 (563)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 2222222223344444444444444332 223444444444444444444 66666663 35678899999
Q ss_pred HHHhhhCCCCcc
Q 008630 291 YICAKFGLTTDK 302 (559)
Q Consensus 291 ~L~~k~~~~~~~ 302 (559)
..+..+|+.-..
T Consensus 386 ~~l~~L~m~~~~ 397 (563)
T TIGR00634 386 QELKALAMEKAE 397 (563)
T ss_pred HHHHhCCCCCcE
Confidence 999999976444
No 119
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.63 E-value=2.9 Score=51.34 Aligned_cols=16 Identities=25% Similarity=0.056 Sum_probs=11.1
Q ss_pred CCCCCCCcccccCChh
Q 008630 406 YEGGPDPHDDFLDTPF 421 (559)
Q Consensus 406 ~~~~~d~~d~~~d~~~ 421 (559)
...|.=-.|-|+-||.
T Consensus 507 ~~vg~v~~D~~~~T~~ 522 (1109)
T PRK10929 507 SRVGKVTQDHFSLTLR 522 (1109)
T ss_pred HhcCCcccccccccHH
Confidence 3455566788888874
No 120
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.57 E-value=0.00057 Score=80.60 Aligned_cols=42 Identities=26% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 008630 258 LQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFGLT 299 (559)
Q Consensus 258 ~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~~~ 299 (559)
.-+|..+..+|-.|.+-..++....+.|.+.|+.|+-.++..
T Consensus 524 qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~ 565 (859)
T PF01576_consen 524 QRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHA 565 (859)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555556666667777788888888888777643
No 121
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.56 E-value=0.55 Score=44.45 Aligned_cols=90 Identities=20% Similarity=0.193 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 91 EHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFE 170 (559)
Q Consensus 91 Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~le 170 (559)
.++..|-.++.++...+.+...+.-.......+++.++..+..+..++..+..++..+..+-.++.++.+...+++..++
T Consensus 21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555544444445555555444444444444444444444444444444444444444443
Q ss_pred HHHHHHHHHH
Q 008630 171 ENVSRLQEEL 180 (559)
Q Consensus 171 eEv~eLqekl 180 (559)
.-...+.+-|
T Consensus 101 ~~~~~~~~~l 110 (140)
T PF10473_consen 101 SLNSSLENLL 110 (140)
T ss_pred HHhHHHHHHH
Confidence 3333333333
No 122
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.54 E-value=2.8 Score=50.20 Aligned_cols=77 Identities=17% Similarity=0.193 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008630 219 KQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAK 295 (559)
Q Consensus 219 ~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k 295 (559)
+..+...+....+....+...+.....++..+...+..+.+.+......+....+.+..+...+..+...+..+..+
T Consensus 370 ~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 446 (908)
T COG0419 370 LEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESK 446 (908)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444555555555555555556666666666666554444444666666666666666666665544
No 123
>PRK11281 hypothetical protein; Provisional
Probab=96.49 E-value=2.6 Score=51.74 Aligned_cols=43 Identities=16% Similarity=0.088 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHH
Q 008630 222 LLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQK 264 (559)
Q Consensus 222 l~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k 264 (559)
+...+..+-.+.+.+.++....+..+....+....+++|++.+
T Consensus 290 Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l 332 (1113)
T PRK11281 290 LSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVL 332 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555566666666666666666666666666666655
No 124
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=2.7 Score=49.39 Aligned_cols=39 Identities=13% Similarity=0.202 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 159 KKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQL 197 (559)
Q Consensus 159 keel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~L 197 (559)
+.+...+...++.++..+++++..+..+++..-..++.+
T Consensus 801 l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m 839 (970)
T KOG0946|consen 801 LSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESM 839 (970)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHh
Confidence 333333333444444444444444444444433333333
No 125
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=2.2 Score=48.27 Aligned_cols=164 Identities=23% Similarity=0.263 Sum_probs=79.2
Q ss_pred HHHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 008630 37 LVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQ 116 (559)
Q Consensus 37 ~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek 116 (559)
...|.-|+.+|+-|-.++.+-+.+...+- +|+|.=+ .+-...+.++.+++...+....++....+-+......
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~~qaA--eyGL~lL-----eeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~ 79 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEKIQAA--EYGLELL-----EEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQ 79 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566655555555555444332 3444333 3333455556666666666666666655555544444
Q ss_pred Hhh-hHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 117 LGA-KTEEVAREKELTENL-------FKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVE 188 (559)
Q Consensus 117 ~~k-l~EEIee~kekleeL-------~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIs 188 (559)
+.+ ....+++...++++- ..+|-.|+.++-.++..|.+...+.+.+......+.+.-..++-+...+..+|-
T Consensus 80 hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elK 159 (772)
T KOG0999|consen 80 HKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELK 159 (772)
T ss_pred HHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHH
Confidence 332 223444444444442 233333344444444555555555555444444443333333444444455555
Q ss_pred HHHHHHHHHHHHHhhhhHH
Q 008630 189 EGRKLQEQLLQQIDFKSSE 207 (559)
Q Consensus 189 elr~~iq~LeQeLE~~~~E 207 (559)
++.-.-.+|.+.+--++.+
T Consensus 160 e~KfRE~RllseYSELEEE 178 (772)
T KOG0999|consen 160 EYKFREARLLSEYSELEEE 178 (772)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5555555555554444333
No 126
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.46 E-value=0.95 Score=48.09 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 175 RLQEELTKKTEEVEEGRKLQEQLLQQ 200 (559)
Q Consensus 175 eLqekl~q~ekEIselr~~iq~LeQe 200 (559)
..+..+..+..++...+..+..+..+
T Consensus 200 ~~~~~~~~~~~~l~~~~~~l~~~~~~ 225 (423)
T TIGR01843 200 ELERERAEAQGELGRLEAELEVLKRQ 225 (423)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333444444444433333333333
No 127
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.46 E-value=0.49 Score=52.22 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008630 272 KKKRRDVIDAYKRLKSQYNYICAKFG 297 (559)
Q Consensus 272 ~rKl~~l~~eyk~LKSqi~~L~~k~~ 297 (559)
...+..+..++...+..|+.+..++.
T Consensus 354 ~~el~~L~Re~~~~~~~Y~~l~~r~e 379 (498)
T TIGR03007 354 EAELTQLNRDYEVNKSNYEQLLTRRE 379 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555543
No 128
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.42 E-value=0.81 Score=47.51 Aligned_cols=8 Identities=25% Similarity=0.576 Sum_probs=3.0
Q ss_pred HHhHHHHH
Q 008630 44 RCEINELK 51 (559)
Q Consensus 44 ~~~~~~l~ 51 (559)
+..+.+++
T Consensus 37 ds~l~~~~ 44 (265)
T COG3883 37 DSKLSELQ 44 (265)
T ss_pred HHHHHHHH
Confidence 33333333
No 129
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.35 E-value=3.3 Score=51.94 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=17.6
Q ss_pred HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHH
Q 008630 86 CDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEE 123 (559)
Q Consensus 86 Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EE 123 (559)
++.+.+++..|..+...+..+..++..|......+..+
T Consensus 741 ~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e 778 (1353)
T TIGR02680 741 LRRIAELDARLAAVDDELAELARELRALGARQRALADE 778 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444
No 130
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=96.31 E-value=1.4 Score=44.25 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008630 108 KIVDELQRQLGAKTEEVAREKELTENLFKKIEK 140 (559)
Q Consensus 108 erL~~Leek~~kl~EEIee~kekleeL~~eIe~ 140 (559)
.+...|..+...+............++..-|..
T Consensus 23 ~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~ 55 (207)
T PF05010_consen 23 EEEQELKKKYEELHKENQEMRKIMEEYEKTIAQ 55 (207)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443333
No 131
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.29 E-value=3.9 Score=49.16 Aligned_cols=237 Identities=16% Similarity=0.176 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH---HHHHHH
Q 008630 66 EMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFK---KIEKLS 142 (559)
Q Consensus 66 el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~---eIe~Le 142 (559)
++-+..-+.++.+-+++...+-++-++++++.....+....++.+..+......+..++...+.+...+.. .|...+
T Consensus 629 ~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~~~~l~~qk 708 (1072)
T KOG0979|consen 629 ELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIENLVVDLDRQE 708 (1072)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555566666666666666666666666666666666666666665544333333333222 223322
Q ss_pred HHHHHHHH-HHHHHHH----H---HHHHHHHHHH-----------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 143 LDISHYKQ-LLADEKK----E---KKCFLTKFEV-----------F---EENVSRLQEELTKKTEEVEEGRKLQEQLLQQ 200 (559)
Q Consensus 143 ~eie~~e~-eLee~Ek----E---keel~ek~e~-----------l---eeEv~eLqekl~q~ekEIselr~~iq~LeQe 200 (559)
.++..... .+...++ . .-++..++.+ + .....++++.+...+.-|..+....+-++.+
T Consensus 709 ee~~~~~~~~I~~~~~~~~~~~~~~~~~~~k~~e~~i~~~~~~~~~~~s~~~~iea~~~i~~~e~~i~~~~~~~~~lk~a 788 (1072)
T KOG0979|consen 709 EEYAASEAKKILDTEDMRIQSIRWHLELTDKHKEIGIKEKNESSYMARSNKNNIEAERKIEKLEDNISFLEAREDLLKTA 788 (1072)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 22222111 1111111 0 0011111111 1 5567778888888888888888888888888
Q ss_pred HhhhhHHHHHhHHH--H---------------------HHHHHHHHHHHHHHHHHHHHHHH-HH------HHHhhhhhcc
Q 008630 201 IDFKSSEITKNKQE--F---------------------EKEKQLLLDKVRGLEEKANELKK-NF------CEKSSKQGWG 250 (559)
Q Consensus 201 LE~~~~Ei~kle~E--L---------------------EkE~~el~kkie~l~ek~eeLq~-ei------eelkekL~~~ 250 (559)
++-+....+....+ + -.++.++-..+.++...+..=.. .. +..-+++.-.
T Consensus 789 ~~~~k~~a~~~~~~~~~~t~~~~~~s~~~~~~ek~~~~~~e~~e~p~t~~eld~~I~~e~t~~~~~~n~ne~~vq~y~~r 868 (1072)
T KOG0979|consen 789 LEDKKKEAAEKRKEQSLQTLKREIMSPATNKIEKSLVLMKELAEEPTTMDELDQAITDELTRALKFENVNEDAVQQYEVR 868 (1072)
T ss_pred HHHHHHHHHhcccchhHHHhhhccccccccchhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 88888777776632 1 12222222333333222211100 00 0122344445
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhCCCCcc
Q 008630 251 MDSNDKLLQEIEQKTAELMAEKKKRRDVID-AYKRLKSQYNYICAKFGLTTDK 302 (559)
Q Consensus 251 e~eieeL~eqL~~k~~el~~e~rKl~~l~~-eyk~LKSqi~~L~~k~~~~~~~ 302 (559)
+.+|..|...+...+..|.--..+++++++ -...|+.+|.-+-.+|-....+
T Consensus 869 ~~el~~l~~~~~~~~~~le~i~~kl~~~ke~w~~~le~~V~~In~~Fs~~F~~ 921 (1072)
T KOG0979|consen 869 EDELRELETKLEKLSEDLERIKDKLSDVKEVWLPKLEEMVEQINERFSQLFSS 921 (1072)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555555555555555555544778877777 3344555555555555433333
No 132
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.27 E-value=2.5 Score=46.77 Aligned_cols=84 Identities=20% Similarity=0.261 Sum_probs=62.1
Q ss_pred HhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHH
Q 008630 45 CEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIK--KKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTE 122 (559)
Q Consensus 45 ~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~--~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~E 122 (559)
-+|.+|.+.|+.+++++...-+|+.+|...++++..... .+...+.++.+-|+....+|.-.....+.|+.+.....+
T Consensus 345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se 424 (521)
T KOG1937|consen 345 RRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESE 424 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999877544 344556666666666666666666666666655555555
Q ss_pred HHHHHH
Q 008630 123 EVAREK 128 (559)
Q Consensus 123 EIee~k 128 (559)
.+.+.=
T Consensus 425 ~L~Rsf 430 (521)
T KOG1937|consen 425 ALNRSF 430 (521)
T ss_pred HHhhhH
Confidence 554443
No 133
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.26 E-value=0.0011 Score=76.70 Aligned_cols=112 Identities=22% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhHHHHHhHHH-----
Q 008630 153 ADEKKEKKCFLTKFEVF----------EENVSRLQEELTKKT---EEVEEGRKLQEQLLQQIDFKSSEITKNKQE----- 214 (559)
Q Consensus 153 ee~EkEkeel~ek~e~l----------eeEv~eLqekl~q~e---kEIselr~~iq~LeQeLE~~~~Ei~kle~E----- 214 (559)
..++.+..++..++..+ ++++..|+.++..++ .++..++.+...|+.++..-.+=+...-.+
T Consensus 260 ~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe 339 (722)
T PF05557_consen 260 RELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPE 339 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHH
Confidence 34455555555554444 666666666665443 444444444555544443322211110001
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHH
Q 008630 215 -FEKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQK 264 (559)
Q Consensus 215 -LEkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k 264 (559)
+-..+..+......+.++++.++..+..+...+..++.++..+..++...
T Consensus 340 ~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l 390 (722)
T PF05557_consen 340 DLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEEL 390 (722)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222233333333444444455554444444444444444444444444
No 134
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=3.6 Score=47.99 Aligned_cols=126 Identities=13% Similarity=0.051 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH---HHHHHHHHHHHHHHHH
Q 008630 155 EKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF---EKEKQLLLDKVRGLEE 231 (559)
Q Consensus 155 ~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL---EkE~~el~kkie~l~e 231 (559)
.......+++....+.+.+..+......+...|..++.+...+......+..++..+..-+ .+...++...++.++.
T Consensus 494 ~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~ 573 (698)
T KOG0978|consen 494 ANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQI 573 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555555555555555555555555555545554444444 6666777777888888
Q ss_pred HHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 232 KANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVID 280 (559)
Q Consensus 232 k~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~ 280 (559)
..+...+.++.++.++.....+++.+......+..|+.-.++++...+.
T Consensus 574 ~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~ 622 (698)
T KOG0978|consen 574 ELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKK 622 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8888888888888888888888888888877775556666666665554
No 135
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.15 E-value=4.2 Score=48.16 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 266 AELMAEKKKRRDVIDAYKRLKSQYNYIC 293 (559)
Q Consensus 266 ~el~~e~rKl~~l~~eyk~LKSqi~~L~ 293 (559)
+||.+-..||.+=+..+-.|=.|+..|+
T Consensus 733 ~EiaaAA~KLAECQeTI~sLGkQLksLa 760 (769)
T PF05911_consen 733 KEIAAAAEKLAECQETIASLGKQLKSLA 760 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3566667777777777777777777766
No 136
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.15 E-value=3.7 Score=47.58 Aligned_cols=66 Identities=17% Similarity=0.147 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHhhhHHHH-------HHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 21 DKAKLLQEQEEKTGQLLV-------KLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKC 86 (559)
Q Consensus 21 ~~~~l~~~~e~~~~~~~~-------~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Q 86 (559)
+..+|+-+++.++.++-. ++--++.++..++..++..+-.|..-....++-.+.++...+.+....
T Consensus 141 k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~ 213 (716)
T KOG4593|consen 141 KELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQ 213 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555441 222233344444444444444444444444444444444444443333
No 137
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.10 E-value=2.4 Score=44.98 Aligned_cols=81 Identities=22% Similarity=0.226 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 008630 216 EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVID----AYKRLKSQYNY 291 (559)
Q Consensus 216 EkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~----eyk~LKSqi~~ 291 (559)
..++......+......+..++.++..+...|......+.+++.+|... .+.+..-+. +...|+..+..
T Consensus 210 k~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~a-------e~~~~~~r~~t~~Ei~~Lk~~~~~ 282 (312)
T smart00787 210 KEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEA-------EKKLEQCRGFTFKEIEKLKEQLKL 282 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3344444445555555566666666666666666666666666666666 555544433 88889999999
Q ss_pred HHhhhCCCCccc
Q 008630 292 ICAKFGLTTDKM 303 (559)
Q Consensus 292 L~~k~~~~~~~~ 303 (559)
|-...|++--++
T Consensus 283 Le~l~g~~~~~~ 294 (312)
T smart00787 283 LQSLTGWKITKL 294 (312)
T ss_pred HHHHhCCeeEec
Confidence 999999885443
No 138
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=96.09 E-value=2 Score=43.95 Aligned_cols=195 Identities=12% Similarity=0.126 Sum_probs=94.0
Q ss_pred HHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 008630 38 VKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQL 117 (559)
Q Consensus 38 ~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~ 117 (559)
..+..+...|+.+...++....-+.-.+-.-..|=+.+..+...+...++...........+.........+...|....
T Consensus 17 ~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i 96 (264)
T PF06008_consen 17 PAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFI 96 (264)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777777666666665555544444444444444555555555444444444444444444444444444333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 118 GAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQL 197 (559)
Q Consensus 118 ~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~L 197 (559)
..+...|......+..+..... ..--.++...|++.+.-++++ +.+- +......++.++......+.+.
T Consensus 97 ~~l~~~i~~l~~~~~~l~~~~~--~~~~~~l~~~l~ea~~mL~em-------r~r~--f~~~~~~Ae~El~~A~~LL~~v 165 (264)
T PF06008_consen 97 QNLQDNIQELIEQVESLNENGD--QLPSEDLQRALAEAQRMLEEM-------RKRD--FTPQRQNAEDELKEAEDLLSRV 165 (264)
T ss_pred HHHHHHHHHHHHHHHHhCcccC--CCCHHHHHHHHHHHHHHHHHH-------Hhcc--chhHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333332222000 011122223333333333333 3332 3344444555666666666666
Q ss_pred HHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 198 LQQIDFKSSEITKNKQEFEKEKQLLLDKVRGLEEKANELKKNFCEK 243 (559)
Q Consensus 198 eQeLE~~~~Ei~kle~ELEkE~~el~kkie~l~ek~eeLq~eieel 243 (559)
...+.....+...+...+...+..+..++.+++.-+++......+.
T Consensus 166 ~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea 211 (264)
T PF06008_consen 166 QKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREA 211 (264)
T ss_pred HHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555555555554445555555566666666665555544444
No 139
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.03 E-value=4.4 Score=47.36 Aligned_cols=26 Identities=4% Similarity=0.040 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008630 272 KKKRRDVIDAYKRLKSQYNYICAKFG 297 (559)
Q Consensus 272 ~rKl~~l~~eyk~LKSqi~~L~~k~~ 297 (559)
...+..|..++...+..|+.+..++.
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~ 400 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYR 400 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555543
No 140
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.03 E-value=2.2 Score=47.17 Aligned_cols=9 Identities=11% Similarity=0.147 Sum_probs=5.0
Q ss_pred cccccCCCC
Q 008630 363 TSSFHSSSS 371 (559)
Q Consensus 363 ~~~~~~~~~ 371 (559)
+.+|+||..
T Consensus 439 d~~i~~~~~ 447 (498)
T TIGR03007 439 RPTVRSVRD 447 (498)
T ss_pred cCcCCCHHH
Confidence 555666553
No 141
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.99 E-value=3.1 Score=45.32 Aligned_cols=208 Identities=13% Similarity=0.150 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 77 SKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEK 156 (559)
Q Consensus 77 ~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~E 156 (559)
...+.+.+-=-+|.++...++.+-.++...+......+........|+..-....+.+..++... ...+....
T Consensus 64 ~~~~~lr~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a-------~~n~~kAq 136 (499)
T COG4372 64 LLNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAA-------RQNLAKAQ 136 (499)
T ss_pred HhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 33344444444444444445555454444444444444444444444444443333333333333 33333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHHhHHHHHHHHHHHHHH---HHHHH
Q 008630 157 KEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLL---QQIDFKSSEITKNKQEFEKEKQLLLDK---VRGLE 230 (559)
Q Consensus 157 kEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~Le---QeLE~~~~Ei~kle~ELEkE~~el~kk---ie~l~ 230 (559)
.++..+-.+...++.++..|-.++.+++.+...+..+...|+ .++..-.-++.....+++-+-..+-.+ ++...
T Consensus 137 Q~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~ 216 (499)
T COG4372 137 QELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQART 216 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555555555555555544444 222222222222222221111111111 12223
Q ss_pred HHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 231 EKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNY 291 (559)
Q Consensus 231 ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~ 291 (559)
+++-.+.+....+..++......|..+.++|...+-.+..-.+++..+..+...|+..+..
T Consensus 217 ~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~ 277 (499)
T COG4372 217 EELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQ 277 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444444444455555555554444444443
No 142
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.95 E-value=0.41 Score=55.97 Aligned_cols=42 Identities=19% Similarity=0.344 Sum_probs=20.2
Q ss_pred HHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008630 100 IAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL 141 (559)
Q Consensus 100 e~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L 141 (559)
..++..+++++..|.+.-..+.+.++....+.+.|.++++.+
T Consensus 578 l~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 578 LKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444455555555555555555555
No 143
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.94 E-value=2 Score=42.77 Aligned_cols=75 Identities=23% Similarity=0.266 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 170 EENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF----------EKEKQLLLDKVRGLEEKANELKKN 239 (559)
Q Consensus 170 eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL----------EkE~~el~kkie~l~ek~eeLq~e 239 (559)
...+.+|...+..+.+.+..+...-+.+.++.+.....|.-+-..| +.-+..|...+++++.++...+..
T Consensus 108 Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~k 187 (205)
T KOG1003|consen 108 ESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEK 187 (205)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHH
Confidence 3334444444444444444444444444444444444443333333 444444444444444444444444
Q ss_pred HHHHh
Q 008630 240 FCEKS 244 (559)
Q Consensus 240 ieelk 244 (559)
+..++
T Consensus 188 y~~~~ 192 (205)
T KOG1003|consen 188 YEEAK 192 (205)
T ss_pred HHHHH
Confidence 43333
No 144
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=95.85 E-value=1.8 Score=42.82 Aligned_cols=114 Identities=20% Similarity=0.244 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 170 EENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF--------EKEKQLLLDKVRGLEEKANELKKNFC 241 (559)
Q Consensus 170 eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL--------EkE~~el~kkie~l~ek~eeLq~eie 241 (559)
..-+..++..+.++...++........+..+++.....+..+.... +.--.....+...+...+..++..+.
T Consensus 29 ~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~ 108 (221)
T PF04012_consen 29 EQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLD 108 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666677777777777777777777777777777777663 44445666667777777777777777
Q ss_pred HHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 242 EKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYN 290 (559)
Q Consensus 242 elkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~ 290 (559)
.....+..+...+..+..+|... +.+...+...+...+.+..
T Consensus 109 ~~~~~~~~l~~~l~~l~~kl~e~-------k~k~~~l~ar~~~a~a~~~ 150 (221)
T PF04012_consen 109 QAEAQVEKLKEQLEELEAKLEEL-------KSKREELKARENAAKAQKK 150 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777776 6666666665555554443
No 145
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=95.75 E-value=1.1 Score=50.11 Aligned_cols=174 Identities=15% Similarity=0.136 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHH
Q 008630 91 EHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL--------------------SLDISHYKQ 150 (559)
Q Consensus 91 Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L--------------------e~eie~~e~ 150 (559)
.+-+.-+.+..+..++++++..-=+....+..|+.+..+++.....=++.- ..-.+-+..
T Consensus 87 sllk~nk~Lq~~nesLeEqv~~~~d~vvql~hels~k~ellr~ys~~~ees~~~~v~~~P~~~~~s~S~~~~~~~EaL~e 166 (596)
T KOG4360|consen 87 SLLKANKALQEDNESLEEQVDAPWDRVVQLGHELSRKDELLRGYSAAIEESEAASVCSTPLVSNESRSAFQRELLEALQE 166 (596)
T ss_pred HHHhhhhhhhhhhhhhHhhhcchHHHHHHhhhhhhhhhhhhheeeeccccccccccccCCCccCcchhhHHHHHHHHHHh
Confidence 344444444555555555555555555555566666655554422211111 122455677
Q ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH---H
Q 008630 151 LLADEKKEKKCFLTKFEVF-----------EENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF---E 216 (559)
Q Consensus 151 eLee~EkEkeel~ek~e~l-----------eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL---E 216 (559)
.|...+++...++.+...+ ..=++-+..++..++..+..+...++..-.++.+...++.++-.+| .
T Consensus 167 kLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~q 246 (596)
T KOG4360|consen 167 KLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQ 246 (596)
T ss_pred hcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 7888888888888887777 2233455566666666666666666666666666666666666666 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHH
Q 008630 217 KEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQK 264 (559)
Q Consensus 217 kE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k 264 (559)
++..++.=..+.+.+-+........++..++.++++...+..+.+.+.
T Consensus 247 kk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~Ea 294 (596)
T KOG4360|consen 247 KKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEA 294 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444433344444444444444444444444433
No 146
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=95.74 E-value=3 Score=45.32 Aligned_cols=26 Identities=4% Similarity=0.153 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008630 272 KKKRRDVIDAYKRLKSQYNYICAKFG 297 (559)
Q Consensus 272 ~rKl~~l~~eyk~LKSqi~~L~~k~~ 297 (559)
......+..++...+..|+.+..|+.
T Consensus 341 ~~~~~~L~r~~~~~~~~y~~ll~r~~ 366 (444)
T TIGR03017 341 RDEMSVLQRDVENAQRAYDAAMQRYT 366 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677777777777777764
No 147
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.71 E-value=3.2 Score=43.23 Aligned_cols=63 Identities=22% Similarity=0.375 Sum_probs=33.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 82 IKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLD 144 (559)
Q Consensus 82 L~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~e 144 (559)
|......+.++......+++++..|...+..+..+.....+++.+....++.|...|+.+...
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~ 95 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKEN 95 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555555555555555555555555555554444333
No 148
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.65 E-value=3.3 Score=48.39 Aligned_cols=8 Identities=63% Similarity=1.049 Sum_probs=4.3
Q ss_pred CCCCCCCC
Q 008630 541 YIPPLTPE 548 (559)
Q Consensus 541 ~~pp~TPp 548 (559)
|.||.|||
T Consensus 742 ~~~~~~~~ 749 (754)
T TIGR01005 742 YEPPGTPG 749 (754)
T ss_pred ccCCCCcc
Confidence 34555655
No 149
>PRK11281 hypothetical protein; Provisional
Probab=95.62 E-value=8.4 Score=47.49 Aligned_cols=16 Identities=31% Similarity=0.308 Sum_probs=10.9
Q ss_pred CCCCCCcccccCChhh
Q 008630 407 EGGPDPHDDFLDTPFE 422 (559)
Q Consensus 407 ~~~~d~~d~~~d~~~~ 422 (559)
..|.=-.|.|.-||.-
T Consensus 530 ~ig~~~~D~~~~T~~a 545 (1113)
T PRK11281 530 DIGTLKRDSQLHTPKA 545 (1113)
T ss_pred hcCCcccCcccccHHH
Confidence 4556667888888743
No 150
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.59 E-value=6 Score=45.60 Aligned_cols=11 Identities=18% Similarity=0.286 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 008630 281 AYKRLKSQYNY 291 (559)
Q Consensus 281 eyk~LKSqi~~ 291 (559)
++..|..+|+.
T Consensus 579 EirdLe~qI~~ 589 (594)
T PF05667_consen 579 EIRDLEEQIDT 589 (594)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 151
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=95.55 E-value=1.7 Score=50.36 Aligned_cols=49 Identities=22% Similarity=0.220 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHH
Q 008630 216 EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQK 264 (559)
Q Consensus 216 EkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k 264 (559)
.++....+.++++|.+.+..+.+.+.++.-.-..+.-.++.|+++++.+
T Consensus 208 lkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL 256 (916)
T KOG0249|consen 208 LKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQL 256 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3444444444444555555554444444444444444444455544444
No 152
>PF13166 AAA_13: AAA domain
Probab=95.51 E-value=6.4 Score=45.39 Aligned_cols=58 Identities=14% Similarity=0.087 Sum_probs=28.8
Q ss_pred HHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhCCCCcc
Q 008630 238 KNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDA---YKRLKSQYNYICAKFGLTTDK 302 (559)
Q Consensus 238 ~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~e---yk~LKSqi~~L~~k~~~~~~~ 302 (559)
.++..++..+......+..+...+... ..++.++... ...+...++..++.||++.-.
T Consensus 417 ~~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~i~~l~~~~~~~~~~~~~iN~~L~~~g~~~~~ 477 (712)
T PF13166_consen 417 KEIKELEKEINSLEKKLKKAKEEIKKI-------EKEIKELEAQLKNTEPAADRINEELKRLGFSNFS 477 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCeE
Confidence 333333333444444444444444444 4444444443 334556777788888876443
No 153
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.45 E-value=8.5 Score=46.44 Aligned_cols=25 Identities=16% Similarity=0.314 Sum_probs=10.7
Q ss_pred HHhHHHHHHHHHHHHHHHHhhHHHH
Q 008630 85 KCDQLEEHEEKTKTLIAELNSHKKI 109 (559)
Q Consensus 85 ~Qk~L~Ele~kI~~le~e~k~leer 109 (559)
.+..|+.++..+..++.++..+.++
T Consensus 200 ~~~~l~~L~~~~~~l~kdVE~~rer 224 (1072)
T KOG0979|consen 200 KTEKLNRLEDEIDKLEKDVERVRER 224 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 154
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=95.42 E-value=3.5 Score=42.81 Aligned_cols=50 Identities=16% Similarity=0.178 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHH
Q 008630 215 FEKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQK 264 (559)
Q Consensus 215 LEkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k 264 (559)
+.+-..+|-..++.|.+.++..++-+-.|+++|.+++.+|+.+..-++..
T Consensus 255 lkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~ 304 (330)
T KOG2991|consen 255 LKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQV 304 (330)
T ss_pred HHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566677788888888888888888888888877777666555555
No 155
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.38 E-value=5.6 Score=43.86 Aligned_cols=193 Identities=16% Similarity=0.144 Sum_probs=102.5
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhHHHHHHHhHHHhHHHHHHHHHHHh---HhhhhH-HHHHHHHHHHHHHHHHHHHHHHhH
Q 008630 13 EENKTLKFDKAKLLQEQEEKTGQLLVKLESQRCEINELKQELEFKS---KEVEGV-KEMQKGLIQLAQSKACEIKKKCDQ 88 (559)
Q Consensus 13 ~e~~~l~~~~~~l~~~~e~~~~~~~~~~~sl~~~~~~l~~~~~~k~---~~v~~~-~el~~~l~~~~~~~~keL~~~Qk~ 88 (559)
++.|.++....+-+....+...++-++.+.+.++++.+..-++.-- +.+.++ .||...|++.---.+.-+..+++.
T Consensus 127 e~k~~~~~~~~~q~eslle~~~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~ 206 (446)
T KOG4438|consen 127 EEKMDLYRPFIQQLESLLELRKQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKM 206 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666555555556677777888888888887765443322 233333 447777777766666666666665
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 89 LEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENL----FKKIEKLSLDISHYKQLLADEKKEKKCFLT 164 (559)
Q Consensus 89 L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL----~~eIe~Le~eie~~e~eLee~EkEkeel~e 164 (559)
-.+-.+.+....+..+.+ +-.|++....+...|...=+++.++ ..-|....+.+.++..+-..+++.+..+..
T Consensus 207 k~s~~s~~~k~l~al~ll---v~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qt 283 (446)
T KOG4438|consen 207 KKSSTSEKNKILNALKLL---VVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQT 283 (446)
T ss_pred hHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 444444333333333333 3333444343444443333333322 222222244455555555555544444332
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHhH
Q 008630 165 KFEVFEENVSRLQEELT------KKTEEVEEGRKLQEQLLQQIDFKSSEITKNK 212 (559)
Q Consensus 165 k~e~leeEv~eLqekl~------q~ekEIselr~~iq~LeQeLE~~~~Ei~kle 212 (559)
- +.++.-+...+. .....+..+...+..|..++++++.++..+.
T Consensus 284 i----~~e~~~~lk~i~~~~~e~d~~Et~~v~lke~~~Le~q~e~~~~e~~~lk 333 (446)
T KOG4438|consen 284 I----EKELKALLKKISSDGVEYDSLETKVVELKEILELEDQIELNQLELEKLK 333 (446)
T ss_pred H----HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 333333333222 2234556667777888888888888877776
No 156
>PF13514 AAA_27: AAA domain
Probab=95.36 E-value=9.9 Score=46.67 Aligned_cols=47 Identities=28% Similarity=0.243 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcch--hhhHHHHHHHHHH
Q 008630 218 EKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGM--DSNDKLLQEIEQK 264 (559)
Q Consensus 218 E~~el~kkie~l~ek~eeLq~eieelkekL~~~e--~eieeL~eqL~~k 264 (559)
++..+...++.+...+..+...+-.+..++..+. ..+..+.++++..
T Consensus 897 ~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l~~e~e~~ 945 (1111)
T PF13514_consen 897 ELEELEEELEELEEELEELQEERAELEQELEALEGDDDAAELEQEREEA 945 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3334444444444444444444444444443332 2233444555555
No 157
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.33 E-value=4.9 Score=42.94 Aligned_cols=98 Identities=16% Similarity=0.158 Sum_probs=53.5
Q ss_pred HHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 008630 102 ELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLAD-----EKKEKKCFLTKFEVFEENVSRL 176 (559)
Q Consensus 102 e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee-----~EkEkeel~ek~e~leeEv~eL 176 (559)
....+..-+....+....+..|+..++.++.++...+..|...+...+..-.. +=.+.+.+..+++.++....+|
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qL 145 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQL 145 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 44455555666667777777777777777777777776663333332211111 1134444555555555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008630 177 QEELTKKTEEVEEGRKLQEQLLQ 199 (559)
Q Consensus 177 qekl~q~ekEIselr~~iq~LeQ 199 (559)
+..+..+..+..++-...+....
T Consensus 146 e~d~qs~lDEkeEl~~ERD~yk~ 168 (319)
T PF09789_consen 146 ERDLQSLLDEKEELVTERDAYKC 168 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655555555554444444443
No 158
>PRK10869 recombination and repair protein; Provisional
Probab=95.28 E-value=7.1 Score=44.48 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=37.1
Q ss_pred hcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhCCCCc
Q 008630 248 GWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDA-YKRLKSQYNYICAKFGLTTD 301 (559)
Q Consensus 248 ~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~e-yk~LKSqi~~L~~k~~~~~~ 301 (559)
...+..++.|..++.....+|..-..+|+..+.. .+.|.+.+....+-.|+.-.
T Consensus 337 ~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~L~m~~a 391 (553)
T PRK10869 337 DDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHELSMPHG 391 (553)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 4445556666666666666666667888877764 67788888888888776433
No 159
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.25 E-value=1 Score=41.62 Aligned_cols=93 Identities=28% Similarity=0.289 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 89 LEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEV 168 (559)
Q Consensus 89 L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~ 168 (559)
+..+...|+.++.++..+..++..|+.....+.+||..+....+.+.. ....+..+..++..
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~------------------~~~~~~~L~~el~~ 79 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA------------------LKKEVEELEQELEE 79 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHH
Confidence 444556666777777777777777777777777777776655554433 22233334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 169 FEENVSRLQEELTKKTEEVEEGRKLQEQLLQ 199 (559)
Q Consensus 169 leeEv~eLqekl~q~ekEIselr~~iq~LeQ 199 (559)
++.++..+-+-+.++..++.+++..+..++.
T Consensus 80 l~~ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 80 LQQRYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666666655554
No 160
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=95.25 E-value=11 Score=46.30 Aligned_cols=26 Identities=12% Similarity=0.037 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008630 272 KKKRRDVIDAYKRLKSQYNYICAKFG 297 (559)
Q Consensus 272 ~rKl~~l~~eyk~LKSqi~~L~~k~~ 297 (559)
...+..+..+|..+..+.+.+.+..|
T Consensus 866 ~~~~~~~~~~~~~~~~L~~l~~~~~g 891 (1047)
T PRK10246 866 MQQIAQATQQVEDWGYLNSLIGSKEG 891 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 55666666677777777666644444
No 161
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=95.22 E-value=4.5 Score=41.91 Aligned_cols=51 Identities=24% Similarity=0.259 Sum_probs=29.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHhhhHHHHHHHHHH
Q 008630 80 CEIKKKCDQLEEHEEKTKTLIAELN----SHKKIVDELQRQLGAKTEEVAREKEL 130 (559)
Q Consensus 80 keL~~~Qk~L~Ele~kI~~le~e~k----~leerL~~Leek~~kl~EEIee~kek 130 (559)
+....++.+|+++...-+++++++. -++.+.+.|+....+++-|++..+++
T Consensus 27 q~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek 81 (333)
T KOG1853|consen 27 QHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEK 81 (333)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678899999998888877543 23334444444444444444444433
No 162
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=95.21 E-value=4.3 Score=41.56 Aligned_cols=90 Identities=13% Similarity=0.217 Sum_probs=45.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 80 CEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEK 159 (559)
Q Consensus 80 keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEk 159 (559)
..|...+.+|..+...++.....+..++..+..|......+.++...-......+....+.+-.....+...+..+...+
T Consensus 24 ~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i 103 (264)
T PF06008_consen 24 SSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNI 103 (264)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555544444444444444455555444444455554455555555555555444444455555555555
Q ss_pred HHHHHHHHHH
Q 008630 160 KCFLTKFEVF 169 (559)
Q Consensus 160 eel~ek~e~l 169 (559)
.++.++...+
T Consensus 104 ~~l~~~~~~l 113 (264)
T PF06008_consen 104 QELIEQVESL 113 (264)
T ss_pred HHHHHHHHHh
Confidence 5555555444
No 163
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=95.19 E-value=3.9 Score=40.95 Aligned_cols=112 Identities=9% Similarity=0.128 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008630 173 VSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF--------EKEKQLLLDKVRGLEEKANELKKNFCEKS 244 (559)
Q Consensus 173 v~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL--------EkE~~el~kkie~l~ek~eeLq~eieelk 244 (559)
+.+++..|.++...++..-.....+.+++......+..+.... +.--...+.+.....+.+..|...+..+.
T Consensus 33 irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~ 112 (219)
T TIGR02977 33 IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVE 112 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555566666666666666666666666666652 44444455566667777777777777777
Q ss_pred hhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 245 SKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNY 291 (559)
Q Consensus 245 ekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~ 291 (559)
..+..+...+..|..+|... +.+.+.+...+...+.+...
T Consensus 113 ~~v~~l~~~l~~L~~ki~~~-------k~k~~~l~ar~~~A~a~~~~ 152 (219)
T TIGR02977 113 ETLAKLQEDIAKLQAKLAEA-------RARQKALAIRHQAASSRLDV 152 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 77777777778888888877 88888788877777776443
No 164
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.16 E-value=0.0055 Score=70.95 Aligned_cols=17 Identities=47% Similarity=0.618 Sum_probs=0.0
Q ss_pred HHHHhHHHhHHHHHHHH
Q 008630 38 VKLESQRCEINELKQEL 54 (559)
Q Consensus 38 ~~~~sl~~~~~~l~~~~ 54 (559)
.++..++..|.+|++++
T Consensus 267 ~~~e~le~ei~~L~q~~ 283 (713)
T PF05622_consen 267 IELEELEKEIDELRQEN 283 (713)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455555555443
No 165
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.16 E-value=3 Score=48.96 Aligned_cols=17 Identities=12% Similarity=0.266 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008630 272 KKKRRDVIDAYKRLKSQ 288 (559)
Q Consensus 272 ~rKl~~l~~eyk~LKSq 288 (559)
...++.+..+.+.++..
T Consensus 698 ~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 698 GEEIDELVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 55555555555444443
No 166
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.14 E-value=0.0056 Score=70.94 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHhHHHHH
Q 008630 35 QLLVKLESQRCEINELK 51 (559)
Q Consensus 35 ~~~~~~~sl~~~~~~l~ 51 (559)
.+..+++.+.....+|+
T Consensus 111 ele~~~~~l~~~~~~le 127 (722)
T PF05557_consen 111 ELEARLKQLEEREEELE 127 (722)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444443333
No 167
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=95.13 E-value=4.8 Score=41.73 Aligned_cols=30 Identities=30% Similarity=0.334 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008630 173 VSRLQEELTKKTEEVEEGRKLQEQLLQQID 202 (559)
Q Consensus 173 v~eLqekl~q~ekEIselr~~iq~LeQeLE 202 (559)
+..|...+.++..--..++..+-.|+|.-+
T Consensus 93 ~s~Leddlsqt~aikeql~kyiReLEQaND 122 (333)
T KOG1853|consen 93 ESQLEDDLSQTHAIKEQLRKYIRELEQAND 122 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344455555555444455555555555433
No 168
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=95.08 E-value=7.9 Score=43.95 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=25.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008630 96 TKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL 141 (559)
Q Consensus 96 I~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L 141 (559)
+..+..+...+-..+..+...+.++..+......+++.+...+++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~EL 201 (563)
T TIGR00634 156 ANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEEL 201 (563)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555555555555665555
No 169
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.05 E-value=5.7 Score=42.12 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=26.8
Q ss_pred hhhHHHHHHHhHHHhHHHHHHHHHHHhHhhhhH-HHH--HHHHHHHHHHHHHHHHHHHhHHH
Q 008630 32 KTGQLLVKLESQRCEINELKQELEFKSKEVEGV-KEM--QKGLIQLAQSKACEIKKKCDQLE 90 (559)
Q Consensus 32 ~~~~~~~~~~sl~~~~~~l~~~~~~k~~~v~~~-~el--~~~l~~~~~~~~keL~~~Qk~L~ 90 (559)
|..+++.....++..+..+++....-.++.+.. .|+ ....-..++++-++++..++.+.
T Consensus 30 k~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lk 91 (309)
T PF09728_consen 30 KYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLK 91 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433333333333 111 12334556666666666666554
No 170
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.04 E-value=8.2 Score=43.92 Aligned_cols=28 Identities=18% Similarity=-0.062 Sum_probs=20.9
Q ss_pred CCccccccccChhhhhcCCCCChhhhHH
Q 008630 478 QGFKYVEPVRKKVERENLKGVECKQCKK 505 (559)
Q Consensus 478 ~~fay~EvVR~K~eR~~L~G~~C~~C~~ 505 (559)
.+-|-++.|=.-++=..|+.|-|.|-++
T Consensus 480 l~~A~~~lv~~SdeLaqlyh~vc~~n~e 507 (772)
T KOG0999|consen 480 LVNAQDELVTFSDELAQLYHHVCECNNE 507 (772)
T ss_pred chhhhHhHhhhhHHHHHHHHHHHHHcCC
Confidence 4567778888888888888877777553
No 171
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=95.03 E-value=7.9 Score=43.63 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=7.9
Q ss_pred HHhHHHhHHHHHHHHH
Q 008630 40 LESQRCEINELKQELE 55 (559)
Q Consensus 40 ~~sl~~~~~~l~~~~~ 55 (559)
++||+.++..|+..+.
T Consensus 157 ~~sL~ekl~lld~al~ 172 (511)
T PF09787_consen 157 PRSLQEKLSLLDEALK 172 (511)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 3555555555554433
No 172
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=94.99 E-value=7.6 Score=43.29 Aligned_cols=77 Identities=17% Similarity=0.275 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 104 NSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEEL 180 (559)
Q Consensus 104 k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl 180 (559)
+++-.-|+.|+.+...+-+.--+..-.-+.+.+.+..|...++..+..|.+...+++-+.-++.....++..||+++
T Consensus 358 qvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry 434 (527)
T PF15066_consen 358 QVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERY 434 (527)
T ss_pred hHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 33333333333333333333333333333344444444555555555666666666666656655566666666555
No 173
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=94.93 E-value=10 Score=44.58 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=23.2
Q ss_pred HHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHH
Q 008630 43 QRCEINELKQELEFKSKEVEGVKEMQKGLIQL 74 (559)
Q Consensus 43 l~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~ 74 (559)
|...|+.|++++....-+-...|-|+++|--+
T Consensus 460 L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~L 491 (762)
T PLN03229 460 LNEMIEKLKKEIDLEYTEAVIAMGLQERLENL 491 (762)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 45667777777777777777778788777666
No 174
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.93 E-value=0.15 Score=50.01 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 008630 161 CFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF---EKEKQLLLDKVRGLEEKANELK 237 (559)
Q Consensus 161 el~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL---EkE~~el~kkie~l~ek~eeLq 237 (559)
.++..+..+...-+++..++..++.++..++..+.....+|..+..++..++.++ +.++.+..+-++.++.++-.|+
T Consensus 78 ~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~ 157 (194)
T PF08614_consen 78 KLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQ 157 (194)
T ss_dssp ------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344445555556666666666666666666666666655566655554 5555555566666666666666
Q ss_pred HHHHHHhhhhhcchhhhHHHHHHHHHH
Q 008630 238 KNFCEKSSKQGWGMDSNDKLLQEIEQK 264 (559)
Q Consensus 238 ~eieelkekL~~~e~eieeL~eqL~~k 264 (559)
-+++.+.+++..++.+...|.++.=..
T Consensus 158 l~~~~~e~k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 158 LQLNMLEEKLRKLEEENRELVERWMQR 184 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666655443
No 175
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.87 E-value=4.9 Score=40.46 Aligned_cols=12 Identities=25% Similarity=0.199 Sum_probs=4.3
Q ss_pred HHhHHHHHHHHH
Q 008630 85 KCDQLEEHEEKT 96 (559)
Q Consensus 85 ~Qk~L~Ele~kI 96 (559)
|.+-+.+++..|
T Consensus 42 m~~i~~e~Ek~i 53 (207)
T PF05010_consen 42 MRKIMEEYEKTI 53 (207)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 176
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.81 E-value=6.5 Score=41.66 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHH
Q 008630 216 EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAEL 268 (559)
Q Consensus 216 EkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el 268 (559)
-..+.+....+..=++.+..+..+.+....++..++.+...++..-+.-+.-|
T Consensus 222 ~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l 274 (309)
T PF09728_consen 222 SEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKAL 274 (309)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44444444444445666677777777777777777777776666666554433
No 177
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.76 E-value=11 Score=44.63 Aligned_cols=73 Identities=16% Similarity=0.178 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 216 EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQ 288 (559)
Q Consensus 216 EkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSq 288 (559)
+.++..+..+++..+-....|+-++-.+..+|+-..++.+=-+.-.+...++-+.=-+|+.-|-+|+.+|+.+
T Consensus 133 e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l 205 (769)
T PF05911_consen 133 EAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRAL 205 (769)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444433333333333333333333333334455555555555444
No 178
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.72 E-value=11 Score=43.89 Aligned_cols=11 Identities=18% Similarity=0.486 Sum_probs=7.9
Q ss_pred HHHhhhCCCCc
Q 008630 291 YICAKFGLTTD 301 (559)
Q Consensus 291 ~L~~k~~~~~~ 301 (559)
.|..+|||...
T Consensus 692 lL~~~~~l~s~ 702 (961)
T KOG4673|consen 692 LLSLNFSLPSS 702 (961)
T ss_pred HHHHhcCCCcc
Confidence 58888987543
No 179
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=94.69 E-value=12 Score=43.94 Aligned_cols=203 Identities=17% Similarity=0.161 Sum_probs=111.9
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHH---HHhhhHHHHHHHhHHH-------hHHHHHHHHHHHhHhhhhH----HHHHHH
Q 008630 5 QLQKQQAVEENKTLKFDKAKLLQEQ---EEKTGQLLVKLESQRC-------EINELKQELEFKSKEVEGV----KEMQKG 70 (559)
Q Consensus 5 ~~~~~~~~~e~~~l~~~~~~l~~~~---e~~~~~~~~~~~sl~~-------~~~~l~~~~~~k~~~v~~~----~el~~~ 70 (559)
....-.+.+.+..|+.+.....-.+ |.++.-+-.++.+.+. .+|+|.-++..+--+|-.- .-||.+
T Consensus 41 r~~~~~a~e~~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqer 120 (916)
T KOG0249|consen 41 RKDLIKAEEMNTKLQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQER 120 (916)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHH
Confidence 3344445555666666554444333 6677766666666553 4667766655554444322 335555
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 71 LIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKK-------IVDELQRQLGAKTEEVAREKELTENLFKKIEKLSL 143 (559)
Q Consensus 71 l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~lee-------rL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~ 143 (559)
|-..-+.+.+-+. -..|-+++.+...-....-..++ ++..|.....++..|+.+...+.+-=.... ++
T Consensus 121 LelaE~~l~qs~r--ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~---~r 195 (916)
T KOG0249|consen 121 LELAEPKLQQSLR--AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHN---KR 195 (916)
T ss_pred HHHhhHhhHhHHh--hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc---cc
Confidence 5444444333333 33444444444433333333332 233333333333333333322222211111 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhH
Q 008630 144 DISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNK 212 (559)
Q Consensus 144 eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle 212 (559)
-.....+-|.-|.++....+++.+.+.+++..+.+++.++...-..+++.++.|.++++++....+..+
T Consensus 196 lsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~~~~ 264 (916)
T KOG0249|consen 196 LSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSLEKE 264 (916)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Confidence 223333667777778778888888888889999999999999999999999999999988885333333
No 180
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=94.67 E-value=4.1 Score=40.85 Aligned_cols=94 Identities=16% Similarity=0.173 Sum_probs=38.1
Q ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 103 LNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTK 182 (559)
Q Consensus 103 ~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q 182 (559)
|..|...+++.+.....+..||-.++..+.++...+...+..+..+...+..-.-+++....++.....+..-|.+++..
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~ 91 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQ 91 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhh
Confidence 34444444444444444444444444444444444444433333333333332223333333333333333444444444
Q ss_pred HHHHHHHHHHHHHH
Q 008630 183 KTEEVEEGRKLQEQ 196 (559)
Q Consensus 183 ~ekEIselr~~iq~ 196 (559)
++.++..++.....
T Consensus 92 le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 92 LEAELAELREELAC 105 (202)
T ss_pred hHHHHHHHHHHHHh
Confidence 44444444444433
No 181
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.66 E-value=0.009 Score=69.20 Aligned_cols=20 Identities=20% Similarity=0.332 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 008630 251 MDSNDKLLQEIEQKTAELMA 270 (559)
Q Consensus 251 e~eieeL~eqL~~k~~el~~ 270 (559)
...+.+|.+.|..++.++.+
T Consensus 575 ~~ki~~Le~~L~~k~~e~~~ 594 (713)
T PF05622_consen 575 SQKIEELEEALQKKEEEMRA 594 (713)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHhHHHHHh
Confidence 44455555555555444433
No 182
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.64 E-value=7.3 Score=41.42 Aligned_cols=65 Identities=17% Similarity=0.135 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhH
Q 008630 148 YKQLLADEKKEKKCFLTKFEVF----EENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNK 212 (559)
Q Consensus 148 ~e~eLee~EkEkeel~ek~e~l----eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle 212 (559)
+....+.++.++..++...+.+ ..+...++.+|.....+|...+..+..++.++..+...+....
T Consensus 177 l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~ 245 (312)
T smart00787 177 LRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLT 245 (312)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444443333333 4455555555555555555555555555555444444444443
No 183
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.60 E-value=0.75 Score=48.71 Aligned_cols=13 Identities=8% Similarity=0.146 Sum_probs=7.8
Q ss_pred HHHHHHhhhCCCC
Q 008630 288 QYNYICAKFGLTT 300 (559)
Q Consensus 288 qi~~L~~k~~~~~ 300 (559)
++..|++++|++-
T Consensus 181 LL~~la~~l~~~f 193 (314)
T PF04111_consen 181 LLQTLAKKLNFKF 193 (314)
T ss_dssp HHHHHHHHCT---
T ss_pred HHHHHHHHhCCCc
Confidence 3667888899883
No 184
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=94.54 E-value=3.8 Score=43.92 Aligned_cols=115 Identities=18% Similarity=0.280 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 73 QLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLL 152 (559)
Q Consensus 73 ~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eL 152 (559)
+++|+|-+.|.....=|..+- .-++--+...+.|+-...++..++-.....+-.....+.. ++.-+
T Consensus 71 ~llq~kirk~~e~~eglr~i~-------es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~-------LE~li 136 (401)
T PF06785_consen 71 QLLQTKIRKITEKDEGLRKIR-------ESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQH-------LEGLI 136 (401)
T ss_pred HHHHHHHHHHHhccHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHH-------HHHHH
Confidence 556666665555444333333 3334444455666666666666666555544444443333 34444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 153 ADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQI 201 (559)
Q Consensus 153 ee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeL 201 (559)
.-++++..++.-+++.+..+.++..++-.++..|+++....++.|..+.
T Consensus 137 ~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~ey 185 (401)
T PF06785_consen 137 RHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEY 185 (401)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555566666666666666666666666666667777666666665543
No 185
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.53 E-value=5.6 Score=39.61 Aligned_cols=13 Identities=38% Similarity=0.491 Sum_probs=5.8
Q ss_pred HHHhHHHhHHHHH
Q 008630 39 KLESQRCEINELK 51 (559)
Q Consensus 39 ~~~sl~~~~~~l~ 51 (559)
-.+||...|.+++
T Consensus 28 lIksLKeei~emk 40 (201)
T PF13851_consen 28 LIKSLKEEIAEMK 40 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 186
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=94.52 E-value=8.6 Score=41.71 Aligned_cols=23 Identities=43% Similarity=0.492 Sum_probs=17.3
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHH
Q 008630 35 QLLVKLESQRCEINELKQELEFK 57 (559)
Q Consensus 35 ~~~~~~~sl~~~~~~l~~~~~~k 57 (559)
.+..|++-|+.+|++|+.+|...
T Consensus 91 s~~~kl~RL~~Ev~EL~eEl~~~ 113 (388)
T PF04912_consen 91 SPEQKLQRLRREVEELKEELEKR 113 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888887765
No 187
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.49 E-value=1.4 Score=40.67 Aligned_cols=17 Identities=12% Similarity=0.259 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008630 272 KKKRRDVIDAYKRLKSQYNY 291 (559)
Q Consensus 272 ~rKl~~l~~eyk~LKSqi~~ 291 (559)
+-.+.|++. ..++||+.
T Consensus 102 ~~Dv~DlK~---myr~Qi~~ 118 (120)
T PF12325_consen 102 RADVQDLKE---MYREQIDQ 118 (120)
T ss_pred HHHHHHHHH---HHHHHHHH
Confidence 444444454 44455544
No 188
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.48 E-value=3.9 Score=38.32 Aligned_cols=58 Identities=22% Similarity=0.343 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 89 LEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDIS 146 (559)
Q Consensus 89 L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie 146 (559)
...+..++..+.+++..+...+..|+.++..+..++.........+...+..+...+.
T Consensus 54 ~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k 111 (151)
T PF11559_consen 54 REDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLK 111 (151)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666666666666666666555555555555433333
No 189
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=94.45 E-value=1.1 Score=45.59 Aligned_cols=29 Identities=28% Similarity=0.488 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-hCCCC
Q 008630 272 KKKRRDVIDAYKRLKSQYNYICAK-FGLTT 300 (559)
Q Consensus 272 ~rKl~~l~~eyk~LKSqi~~L~~k-~~~~~ 300 (559)
...+..+..+|..||..|+.++.- +||..
T Consensus 80 ~~~i~r~~eey~~Lk~~in~~R~e~lgl~~ 109 (230)
T PF10146_consen 80 QEKIQRLYEEYKPLKDEINELRKEYLGLEP 109 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 555566678999999999999998 99766
No 190
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.36 E-value=0.4 Score=47.02 Aligned_cols=106 Identities=25% Similarity=0.298 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008630 173 VSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF---EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGW 249 (559)
Q Consensus 173 v~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL---EkE~~el~kkie~l~ek~eeLq~eieelkekL~~ 249 (559)
+..+...++.+..+++.+......+.+++......+..++.++ ...+..+...+..++.++..|...+.+...-++.
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~ 148 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEI 148 (194)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666666666666666666665 5556666666666666666666666666666666
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 250 GMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRL 285 (559)
Q Consensus 250 ~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~L 285 (559)
+.+++..|.-++... ..+++.+..+...|
T Consensus 149 l~DE~~~L~l~~~~~-------e~k~~~l~~En~~L 177 (194)
T PF08614_consen 149 LQDELQALQLQLNML-------EEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 666666666666666 66666666655444
No 191
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=94.32 E-value=6.7 Score=39.64 Aligned_cols=27 Identities=11% Similarity=-0.123 Sum_probs=13.2
Q ss_pred HHHHHHhhhhhcchhhhHHHHHHHHHH
Q 008630 238 KNFCEKSSKQGWGMDSNDKLLQEIEQK 264 (559)
Q Consensus 238 ~eieelkekL~~~e~eieeL~eqL~~k 264 (559)
.....+..++..++..+..|...|+.+
T Consensus 185 ~qrdl~~~~~~~l~~~l~~Lq~~ln~~ 211 (240)
T PF12795_consen 185 LQRDLLKARIQRLQQQLQALQNLLNQK 211 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444555555555555555555
No 192
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=94.03 E-value=10 Score=40.61 Aligned_cols=33 Identities=15% Similarity=0.081 Sum_probs=16.8
Q ss_pred cccccCCCCccccccCCCCCCCCCCccccCCCC
Q 008630 363 TSSFHSSSSGFIVTEKCPSNVKSAPIAGTKRPA 395 (559)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~p~ 395 (559)
+++-.+|+|+-++.-.|.+..-...++++..|+
T Consensus 350 ~~~~~~~ts~~~a~a~~~~gep~~e~s~~~~~~ 382 (391)
T KOG1850|consen 350 DSEKKLNTSSKRAAASHLEGEPKQESSATEKPA 382 (391)
T ss_pred cchhccCCchhcccccCCCCCccchhhhccCCC
Confidence 455666777666554553222224445555554
No 193
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.01 E-value=1.1 Score=47.53 Aligned_cols=34 Identities=26% Similarity=0.161 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008630 170 EENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDF 203 (559)
Q Consensus 170 eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~ 203 (559)
-.....++.++.+..++...+..+++....+++.
T Consensus 98 ~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~ 131 (314)
T PF04111_consen 98 WREYNELQLELIEFQEERDSLKNQYEYASNQLDR 131 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444333
No 194
>PRK10698 phage shock protein PspA; Provisional
Probab=94.00 E-value=7.7 Score=39.17 Aligned_cols=121 Identities=8% Similarity=0.057 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008630 173 VSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF--------EKEKQLLLDKVRGLEEKANELKKNFCEKS 244 (559)
Q Consensus 173 v~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL--------EkE~~el~kkie~l~ek~eeLq~eieelk 244 (559)
+.+++..+.++...++..-.....+.+++..+...+..+...- +.--...+.+.......+..|...+....
T Consensus 33 i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~ 112 (222)
T PRK10698 33 IQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVD 112 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555555555666666666666666666552 33333334444555666667777777777
Q ss_pred hhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 008630 245 SKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFGLTT 300 (559)
Q Consensus 245 ekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~~~~ 300 (559)
..+..+...+..|...|... +.+.+.+...+...+.+..-=..-.|++.
T Consensus 113 ~~~~~L~~~l~~L~~ki~ea-------k~k~~~L~aR~~~A~a~~~~~~~~~~~~~ 161 (222)
T PRK10698 113 ETLARMKKEIGELENKLSET-------RARQQALMLRHQAASSSRDVRRQLDSGKL 161 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 77777777777777777777 77888887777777776554333334433
No 195
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=93.96 E-value=2.1 Score=46.29 Aligned_cols=132 Identities=12% Similarity=0.139 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 65 KEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLD 144 (559)
Q Consensus 65 ~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~e 144 (559)
..+...+-..+..-...|...+..+.....+|...+ +.+++++..+-..++....+++..+++.+.+...+..+..+
T Consensus 226 ~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sRE---k~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~ 302 (359)
T PF10498_consen 226 KQHKKSIESALPETKSQLDKLQQDISKTLEKIESRE---KYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRE 302 (359)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 334444444444444455555554444444444433 46677888888889999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 145 ISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQ 200 (559)
Q Consensus 145 ie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQe 200 (559)
+..+..+|+..+.++++-...... -.=+..+.+.+.++.+||..+...+.-+++.
T Consensus 303 L~~IseeLe~vK~emeerg~~mtD-~sPlv~IKqAl~kLk~EI~qMdvrIGVleh~ 357 (359)
T PF10498_consen 303 LAEISEELEQVKQEMEERGSSMTD-GSPLVKIKQALTKLKQEIKQMDVRIGVLEHT 357 (359)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHHHHHHHhhhhhheehhh
Confidence 877777777766665444333322 2334556666666666776666666555543
No 196
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=93.90 E-value=8.1 Score=39.04 Aligned_cols=9 Identities=22% Similarity=0.324 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 008630 106 HKKIVDELQ 114 (559)
Q Consensus 106 leerL~~Le 114 (559)
+.+.|..+-
T Consensus 43 ~~~~i~~aP 51 (240)
T PF12795_consen 43 YQKQIDQAP 51 (240)
T ss_pred HHHHHHHhH
Confidence 333333333
No 197
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=93.89 E-value=22 Score=43.99 Aligned_cols=57 Identities=9% Similarity=0.034 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH-HHHHHHHHHHH
Q 008630 170 EENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF-EKEKQLLLDKV 226 (559)
Q Consensus 170 eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL-EkE~~el~kki 226 (559)
..++..++..+...++..+-++.+.+-+..+++..+..+..+++.+ .+...+.+..+
T Consensus 186 ~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~ 243 (1109)
T PRK10929 186 KALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERAL 243 (1109)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555556666666666666666666666666666666555 33333333333
No 198
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.86 E-value=13 Score=41.17 Aligned_cols=40 Identities=13% Similarity=0.032 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008630 62 EGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIA 101 (559)
Q Consensus 62 ~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~ 101 (559)
++.|.+++..++...++............++..++..+..
T Consensus 127 e~k~~~~~~~~~q~eslle~~~q~da~~qq~~~ele~~d~ 166 (446)
T KOG4438|consen 127 EEKMDLYRPFIQQLESLLELRKQLDAKYQQALKELERFDE 166 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3457777777766666664444444444444444444433
No 199
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=93.86 E-value=10 Score=40.12 Aligned_cols=29 Identities=24% Similarity=0.202 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Q 008630 186 EVEEGRKLQEQLLQQIDFKSSEITKNKQE 214 (559)
Q Consensus 186 EIselr~~iq~LeQeLE~~~~Ei~kle~E 214 (559)
+|+.++...+-|-|+|-.-++-.-.++.+
T Consensus 138 d~S~lkd~ne~LsQqLskaesK~nsLe~e 166 (305)
T PF14915_consen 138 DVSNLKDNNEILSQQLSKAESKFNSLEIE 166 (305)
T ss_pred hHHhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444
No 200
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.85 E-value=8.4 Score=39.09 Aligned_cols=10 Identities=20% Similarity=0.122 Sum_probs=4.1
Q ss_pred HHHHhhhhhh
Q 008630 334 AAYCEINKVK 343 (559)
Q Consensus 334 ~~~~~~~~~~ 343 (559)
++..-+++.+
T Consensus 199 aALgyvahlv 208 (302)
T PF10186_consen 199 AALGYVAHLV 208 (302)
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 201
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=93.83 E-value=8.6 Score=39.12 Aligned_cols=113 Identities=17% Similarity=0.181 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 172 NVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF--------EKEKQLLLDKVRGLEEKANELKKNFCEK 243 (559)
Q Consensus 172 Ev~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL--------EkE~~el~kkie~l~ek~eeLq~eieel 243 (559)
-+...+..+.++...++..-..+..++.+++........++..- +.--.+...++..++..+..+...+...
T Consensus 32 ~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~ 111 (225)
T COG1842 32 AIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQA 111 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555666666666666666665551 5555666777777777888888888888
Q ss_pred hhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 244 SSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNY 291 (559)
Q Consensus 244 kekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~ 291 (559)
...+..++..+..|..+|... +.+...+...+..-+.+...
T Consensus 112 ~~~~~~l~~~~~~Le~Ki~e~-------~~~~~~l~ar~~~akA~~~v 152 (225)
T COG1842 112 EEQVEKLKKQLAALEQKIAEL-------RAKKEALKARKAAAKAQEKV 152 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887 77777777766666555443
No 202
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=93.82 E-value=12 Score=40.92 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008630 95 KTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL 141 (559)
Q Consensus 95 kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L 141 (559)
+....-.+.+.-+.++..+..++.+...++.+...+...|..++..+
T Consensus 110 El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l 156 (499)
T COG4372 110 ELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTL 156 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666666666666666666666666666666666666
No 203
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.69 E-value=4.3 Score=44.95 Aligned_cols=83 Identities=20% Similarity=0.213 Sum_probs=46.0
Q ss_pred HHHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 008630 37 LVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQ-LAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQR 115 (559)
Q Consensus 37 ~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~-~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Lee 115 (559)
.+.|.|..++.+.- ..++.| .|+..-..+...-....++......+++.+++.+.++..++.
T Consensus 327 ~sqleSqr~y~e~~-----------------~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~ 389 (493)
T KOG0804|consen 327 TSQLESQRKYYEQI-----------------MSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQT 389 (493)
T ss_pred hhhhhHHHHHHHHH-----------------HHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 67788888887721 112222 233333444444444555555566666666777777777776
Q ss_pred HHhhhHHHHHHHHHHHHHHHH
Q 008630 116 QLGAKTEEVAREKELTENLFK 136 (559)
Q Consensus 116 k~~kl~EEIee~kekleeL~~ 136 (559)
+..+...|+...++.-..|-.
T Consensus 390 k~~k~~kel~~~~E~n~~l~k 410 (493)
T KOG0804|consen 390 KLKKCQKELKEEREENKKLIK 410 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 666666666655543333333
No 204
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.68 E-value=5.8 Score=36.68 Aligned_cols=40 Identities=30% Similarity=0.429 Sum_probs=20.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 008630 80 CEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGA 119 (559)
Q Consensus 80 keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~k 119 (559)
.++.........+...+..+..+++.........+.++..
T Consensus 10 ~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~ 49 (132)
T PF07926_consen 10 SELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYER 49 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555555555555443
No 205
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=93.59 E-value=11 Score=39.78 Aligned_cols=217 Identities=12% Similarity=0.180 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-----
Q 008630 67 MQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL----- 141 (559)
Q Consensus 67 l~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L----- 141 (559)
|+..|--.-+++.+.+..+..+|+.+..+--.+-+++..-...-..|+ .||+....++..+-...+.-
T Consensus 43 Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLE-------tEiES~rsRLaaAi~d~dqsq~skr 115 (305)
T PF14915_consen 43 LQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLE-------TEIESYRSRLAAAIQDHDQSQTSKR 115 (305)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHHhhHH
Confidence 444444444566666777777777766555555444433333333333 33433333333322222211
Q ss_pred ---------HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 008630 142 ---------SLDISHYKQ----LLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEI 208 (559)
Q Consensus 142 ---------e~eie~~e~----eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei 208 (559)
..++..++. .+.++.+.-+-+-.++...+..+..|+.++-.+..-+-+....++..+..+.+.+-.+
T Consensus 116 dlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~ 195 (305)
T PF14915_consen 116 DLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQI 195 (305)
T ss_pred HHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222 2334444444444455555666666666666666556555556666666555555555
Q ss_pred HHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-------hhhhHHHHHHHH--------HHHHHHHH
Q 008630 209 TKNKQEF---EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWG-------MDSNDKLLQEIE--------QKTAELMA 270 (559)
Q Consensus 209 ~kle~EL---EkE~~el~kkie~l~ek~eeLq~eieelkekL~~~-------e~eieeL~eqL~--------~k~~el~~ 270 (559)
...+.-. +..+..+.++-+.+++++-.|+.+=.=|++++... +.-+-.+..+.. .-.++.++
T Consensus 196 KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~ll 275 (305)
T PF14915_consen 196 KEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLL 275 (305)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544443 55566666666666666666665555555444433 222333333331 11122333
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008630 271 EKKKRRDVIDAYKRLKSQYN 290 (559)
Q Consensus 271 e~rKl~~l~~eyk~LKSqi~ 290 (559)
-..+-..+.++|+.|+..+-
T Consensus 276 lEErNKeL~ne~n~LkEr~~ 295 (305)
T PF14915_consen 276 LEERNKELINECNHLKERLY 295 (305)
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 34455567777777776554
No 206
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=93.58 E-value=4.4 Score=46.53 Aligned_cols=44 Identities=16% Similarity=0.083 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHH
Q 008630 230 EEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKK 273 (559)
Q Consensus 230 ~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~r 273 (559)
+.+++.+.++......++-.+..+...|++|+.+++.|.+.-.+
T Consensus 216 ~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~ 259 (861)
T KOG1899|consen 216 QSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLR 259 (861)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHH
Confidence 44666677777777777888888888888888888555443333
No 207
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=93.55 E-value=7.4 Score=37.48 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=9.2
Q ss_pred HhHHHhHHHHHHHHHHHhHhhh
Q 008630 41 ESQRCEINELKQELEFKSKEVE 62 (559)
Q Consensus 41 ~sl~~~~~~l~~~~~~k~~~v~ 62 (559)
.+|+.+...|..++.+|.+++.
T Consensus 45 eqLkien~~l~~kIeERn~eL~ 66 (177)
T PF13870_consen 45 EQLKIENQQLNEKIEERNKELL 66 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 208
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=93.50 E-value=5.6 Score=40.75 Aligned_cols=94 Identities=23% Similarity=0.293 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 65 KEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLD 144 (559)
Q Consensus 65 ~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~e 144 (559)
.||..+|.+. -.+....+..|.+.+..+..++.+.+..+.....|+.+...+.++...+.........+...|..+
T Consensus 8 ~Ele~rL~q~----eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e 83 (246)
T PF00769_consen 8 QELEERLRQM----EEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQE 83 (246)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443 344555666677777777777777777777777777666666666666665555555554455444
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008630 145 ISHYKQLLADEKKEKKCF 162 (559)
Q Consensus 145 ie~~e~eLee~EkEkeel 162 (559)
+......+..+..+++..
T Consensus 84 ~~e~~~~i~~l~ee~~~k 101 (246)
T PF00769_consen 84 LREAEAEIARLEEESERK 101 (246)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444333
No 209
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.19 E-value=13 Score=39.09 Aligned_cols=93 Identities=18% Similarity=0.254 Sum_probs=62.8
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 008630 35 QLLVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQ 114 (559)
Q Consensus 35 ~~~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Le 114 (559)
-++.+++.|+..+|.|+++ =+.+=||+ +++...+....+...+-...+..+.-+-..|-+....|+
T Consensus 15 ~aLqKIqelE~QldkLkKE-------------~qQrQfQl-eSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~le 80 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKE-------------RQQRQFQL-ESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLE 80 (307)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHhH-HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHH
Confidence 3466888888888888844 34444443 667777777777777777777777777777777777777
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008630 115 RQLGAKTEEVAREKELTENLFKKIEKL 141 (559)
Q Consensus 115 ek~~kl~EEIee~kekleeL~~eIe~L 141 (559)
....++..++--.+.+...|...+.+.
T Consensus 81 k~rqKlshdlq~Ke~qv~~lEgQl~s~ 107 (307)
T PF10481_consen 81 KTRQKLSHDLQVKESQVNFLEGQLNSC 107 (307)
T ss_pred HHHHHhhHHHhhhHHHHHHHHHHHHHH
Confidence 777777777766665555555444433
No 210
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.19 E-value=17 Score=40.56 Aligned_cols=69 Identities=10% Similarity=0.087 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 223 LDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIE----QKTAELMAEKKKRRDVIDAYKRLKSQYNY 291 (559)
Q Consensus 223 ~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~----~k~~el~~e~rKl~~l~~eyk~LKSqi~~ 291 (559)
..+|.++.+-+....+++-.+.+.--++..++..+.++|+ ..|-=|-+..++=+..+..|+.|-+.+.+
T Consensus 388 tqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~n 460 (521)
T KOG1937|consen 388 TQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLN 460 (521)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 3344444333333333333333333333444444444433 33433556666777788899999988876
No 211
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=93.08 E-value=11 Score=37.96 Aligned_cols=20 Identities=15% Similarity=0.307 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008630 217 KEKQLLLDKVRGLEEKANEL 236 (559)
Q Consensus 217 kE~~el~kkie~l~ek~eeL 236 (559)
.|+..+.....-|+.-|-..
T Consensus 170 eEKekVi~YQkQLQ~nYvqM 189 (202)
T PF06818_consen 170 EEKEKVIRYQKQLQQNYVQM 189 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333
No 212
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.02 E-value=13 Score=39.07 Aligned_cols=6 Identities=33% Similarity=0.290 Sum_probs=2.2
Q ss_pred HHHHHH
Q 008630 280 DAYKRL 285 (559)
Q Consensus 280 ~eyk~L 285 (559)
.+.+.|
T Consensus 183 ~e~k~l 188 (307)
T PF10481_consen 183 AEVKAL 188 (307)
T ss_pred HHHHHH
Confidence 333333
No 213
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=92.76 E-value=17 Score=39.47 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008630 272 KKKRRDVIDAYKRLKSQYNYIC 293 (559)
Q Consensus 272 ~rKl~~l~~eyk~LKSqi~~L~ 293 (559)
+|..+..+..|..|-+.+....
T Consensus 348 ~r~~~~~~~~y~~ll~r~~e~~ 369 (444)
T TIGR03017 348 QRDVENAQRAYDAAMQRYTQTR 369 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776654
No 214
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.68 E-value=19 Score=39.88 Aligned_cols=43 Identities=23% Similarity=0.123 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Q 008630 173 VSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF 215 (559)
Q Consensus 173 v~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL 215 (559)
+..++-.+.+++.+..++|..+..|....+.+..+..+...+|
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~L 341 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLL 341 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 3344555566666667777777777766666666665555443
No 215
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=92.65 E-value=32 Score=42.27 Aligned_cols=12 Identities=33% Similarity=0.420 Sum_probs=6.2
Q ss_pred CCCcccccCChh
Q 008630 410 PDPHDDFLDTPF 421 (559)
Q Consensus 410 ~d~~d~~~d~~~ 421 (559)
.+|---|||-|.
T Consensus 974 ~~~~~l~lDEp~ 985 (1047)
T PRK10246 974 TRIDSLFLDEGF 985 (1047)
T ss_pred CCCCEEEEeCCC
Confidence 345455666544
No 216
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=92.65 E-value=9.6 Score=39.10 Aligned_cols=87 Identities=18% Similarity=0.290 Sum_probs=38.0
Q ss_pred HHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 101 AELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEEL 180 (559)
Q Consensus 101 ~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl 180 (559)
.+..-++.+|..++....+...++......+..|.......+.+-..+......++.++..|........++-..|..++
T Consensus 5 r~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~ 84 (246)
T PF00769_consen 5 REKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQEL 84 (246)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555444444555555555555555444333333333333333
Q ss_pred HHHHHHH
Q 008630 181 TKKTEEV 187 (559)
Q Consensus 181 ~q~ekEI 187 (559)
..++.+|
T Consensus 85 ~e~~~~i 91 (246)
T PF00769_consen 85 REAEAEI 91 (246)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 217
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=92.56 E-value=20 Score=39.64 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008630 272 KKKRRDVIDAYKRLKSQYNYICAKFG 297 (559)
Q Consensus 272 ~rKl~~l~~eyk~LKSqi~~L~~k~~ 297 (559)
...++..+.++..++..+......++
T Consensus 290 ~~~l~~~~~~l~~~~~~l~~a~~~l~ 315 (457)
T TIGR01000 290 KQEITDLNQKLLELESKIKSLKEDSQ 315 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555555554444443
No 218
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=92.56 E-value=22 Score=40.16 Aligned_cols=59 Identities=19% Similarity=0.062 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 90 EEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYK 149 (559)
Q Consensus 90 ~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e 149 (559)
..+..++-..+...+.|.++.. +...+.....+.......++-+.......+.++.+++
T Consensus 183 ~~fl~rtl~~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk 241 (511)
T PF09787_consen 183 VEFLKRTLKKEIERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYK 241 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444445555555555555555 2233333444444444444444444444433333333
No 219
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=92.48 E-value=22 Score=42.00 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=29.6
Q ss_pred hhhHHHHHHHh--------HHHhHHHHHHHHHHHhHhhhhHHHHHHHHH
Q 008630 32 KTGQLLVKLES--------QRCEINELKQELEFKSKEVEGVKEMQKGLI 72 (559)
Q Consensus 32 ~~~~~~~~~~s--------l~~~~~~l~~~~~~k~~~v~~~~el~~~l~ 72 (559)
...+-++|.++ |..+++.|+++..++-.++..--+|.++|=
T Consensus 490 ~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle 538 (762)
T PLN03229 490 NLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLD 538 (762)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHH
Confidence 33334566677 777899999999998888777666666653
No 220
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=92.38 E-value=33 Score=41.90 Aligned_cols=134 Identities=17% Similarity=0.148 Sum_probs=72.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 82 IKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKC 161 (559)
Q Consensus 82 L~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkee 161 (559)
...+...+.+++.++..++..+..+.+..-....-...+.++....+..+..-...+..+..++.+....|...+.-+..
T Consensus 443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~ 522 (1041)
T KOG0243|consen 443 KKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQ 522 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444545555544444444444444444446666666666666666666666666666666665554433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Q 008630 162 FLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF 215 (559)
Q Consensus 162 l~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL 215 (559)
...=-..+......|+..+-....++..+-..+++...-.+.++.-+.....++
T Consensus 523 ~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l 576 (1041)
T KOG0243|consen 523 QEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQL 576 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHhhhh
Confidence 322222224445566666666666666665555555555555555555555443
No 221
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=92.14 E-value=6.6 Score=42.55 Aligned_cols=122 Identities=14% Similarity=0.265 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008630 170 EENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEFEKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGW 249 (559)
Q Consensus 170 eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~ELEkE~~el~kkie~l~ek~eeLq~eieelkekL~~ 249 (559)
+..+.+.......+..-+...+..+.++...+...-..|..++.-|...+..+.......+.++.+.+..+..+..-+..
T Consensus 219 R~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~ 298 (359)
T PF10498_consen 219 RSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSE 298 (359)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 44444444444444555555555555555555555555555554443333333333344444444444444444444444
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhhhCC
Q 008630 250 GMDSNDKLLQEIEQKTAELMAEKKKRRD-------------VIDAYKRLKSQYNYICAKFGL 298 (559)
Q Consensus 250 ~e~eieeL~eqL~~k~~el~~e~rKl~~-------------l~~eyk~LKSqi~~L~~k~~~ 298 (559)
+..++..+.++|+.. +..+++ ++.....|+..|.-|==++|.
T Consensus 299 ~t~~L~~IseeLe~v-------K~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGV 353 (359)
T PF10498_consen 299 RTRELAEISEELEQV-------KQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGV 353 (359)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhe
Confidence 444444444444444 333333 345778889988888888884
No 222
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.03 E-value=9.9 Score=44.29 Aligned_cols=84 Identities=14% Similarity=0.232 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc---------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 216 EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWG---------------MDSNDKLLQEIEQKTAELMAEKKKRRDVID 280 (559)
Q Consensus 216 EkE~~el~kkie~l~ek~eeLq~eieelkekL~~~---------------e~eieeL~eqL~~k~~el~~e~rKl~~l~~ 280 (559)
...+..+....++-...+..++.+++.++..|... -..++.++.+|..+ +...++-..
T Consensus 109 ~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L-------~~ek~~Rle 181 (660)
T KOG4302|consen 109 KPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNEL-------QKEKSDRLE 181 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 33344444555555566666666667777666655 25667777777777 666666666
Q ss_pred HHHHHHHHHHHHHhhhCCCCcccccc
Q 008630 281 AYKRLKSQYNYICAKFGLTTDKMTSE 306 (559)
Q Consensus 281 eyk~LKSqi~~L~~k~~~~~~~~~~~ 306 (559)
....++..|..||.-+|+....++.+
T Consensus 182 kv~~~~~~I~~l~~~Lg~~~~~~vt~ 207 (660)
T KOG4302|consen 182 KVLELKEEIKSLCSVLGLDFSMTVTD 207 (660)
T ss_pred HHHHHHHHHHHHHHHhCCCcccchhh
Confidence 77788899999999999999977643
No 223
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=91.83 E-value=2.6 Score=36.32 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 89 LEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQL 151 (559)
Q Consensus 89 L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~e 151 (559)
|..++.+|......|..|+.++.+|+++...+.+++.........|..+.+.+..+-..++..
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wqer 68 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 68 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999988888777777777666664444444433
No 224
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=91.46 E-value=22 Score=37.92 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 008630 67 MQKGLIQLAQSKACE 81 (559)
Q Consensus 67 l~~~l~~~~~~~~ke 81 (559)
+.|.|+++|+.+.++
T Consensus 78 isN~LlKkl~~l~ke 92 (310)
T PF09755_consen 78 ISNTLLKKLQQLKKE 92 (310)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555544443
No 225
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=91.38 E-value=20 Score=37.31 Aligned_cols=32 Identities=6% Similarity=0.186 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCcccc
Q 008630 272 KKKRRDVIDAYKRLKSQYNYICAKFGLTTDKMT 304 (559)
Q Consensus 272 ~rKl~~l~~eyk~LKSqi~~L~~k~~~~~~~~~ 304 (559)
+.-++++.+++..|++.+.-|+...+ ++-.++
T Consensus 199 re~i~el~e~I~~L~~eV~~L~~~~~-~~Re~i 230 (258)
T PF15397_consen 199 REEIDELEEEIPQLRAEVEQLQAQAQ-DPREVI 230 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHh
Confidence 55666667777777888888887777 444433
No 226
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=91.38 E-value=26 Score=38.63 Aligned_cols=20 Identities=20% Similarity=0.174 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008630 272 KKKRRDVIDAYKRLKSQYNY 291 (559)
Q Consensus 272 ~rKl~~l~~eyk~LKSqi~~ 291 (559)
+..+..+...+...+..+.+
T Consensus 297 ~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 297 NQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 66777777777676666665
No 227
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=91.35 E-value=11 Score=44.18 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCcccc
Q 008630 270 AEKKKRRDVIDAYKRLKSQYNYICAKFGLTTDKMT 304 (559)
Q Consensus 270 ~e~rKl~~l~~eyk~LKSqi~~L~~k~~~~~~~~~ 304 (559)
.|...++.+.|++--||..|.-+|+---+.++-.-
T Consensus 297 ~e~~~r~kL~N~i~eLkGnIRV~CRvRP~~~~e~~ 331 (670)
T KOG0239|consen 297 KEKEERRKLHNEILELKGNIRVFCRVRPLLPSEKQ 331 (670)
T ss_pred HHHHHHHHHHHHHHHhhcCceEEEEecCCCccccc
Confidence 34677788999999999999999987666655444
No 228
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.28 E-value=2.9 Score=35.33 Aligned_cols=72 Identities=11% Similarity=0.064 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008630 219 KQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFG 297 (559)
Q Consensus 219 ~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~ 297 (559)
+..++.+|......+.-|+-++++++++-..+..+.+...+..+.+ .+.-..++.++.-++..+..|.+|+.
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL-------~~eneqlk~e~~~WQerlrsLLGkme 77 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREAL-------ERENEQLKEEQNGWQERLRALLGKME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4456677777778888888888888888888888888889999888 88888899999999999999999875
No 229
>PF13514 AAA_27: AAA domain
Probab=91.20 E-value=46 Score=41.07 Aligned_cols=58 Identities=17% Similarity=0.243 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 008630 61 VEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLG 118 (559)
Q Consensus 61 v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~ 118 (559)
++.....+..+++..+.........+..+..+.......+......+..+........
T Consensus 654 l~~~l~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 711 (1111)
T PF13514_consen 654 LAALLEEAEALLEEWEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQ 711 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555555555555555555555555555555554443
No 230
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=90.55 E-value=16 Score=39.58 Aligned_cols=98 Identities=12% Similarity=0.158 Sum_probs=48.6
Q ss_pred HHHHHHhHHHhHHHHHHHHHHH---hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHH
Q 008630 36 LLVKLESQRCEINELKQELEFK---SKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDE 112 (559)
Q Consensus 36 ~~~~~~sl~~~~~~l~~~~~~k---~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~ 112 (559)
.++++-.|+.+|..|+.-|--- +-.++.++. ..-|+.-|+.+.+.++-.+ ...+..++.+++.+..++..
T Consensus 207 ~la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~-~~~l~~~l~~L~~~lslL~------~~~Ld~i~~rl~~L~~~~~~ 279 (388)
T PF04912_consen 207 QLARAADLEKRLARLESALGIDSDKMSSLDSDTS-SSPLLPALNELERQLSLLD------PAKLDSIERRLKSLLSELEE 279 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccccccccccCC-cchHHHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHHHHHH
Confidence 4678888999999988666541 223332222 2333333333333333322 12455555666666666655
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008630 113 LQRQLGAKTEEVAREKELTENLFKKIEKL 141 (559)
Q Consensus 113 Leek~~kl~EEIee~kekleeL~~eIe~L 141 (559)
|..+..... +......++++|+.-+..+
T Consensus 280 l~~~~~~~~-~~~~~e~KI~eLy~~l~~~ 307 (388)
T PF04912_consen 280 LAEKRKEAK-EDAEQESKIDELYEILPRW 307 (388)
T ss_pred HHhcccccc-ccccchhHHHHHHHHHHHH
Confidence 554433322 2233344555555544444
No 231
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.42 E-value=4.8 Score=46.17 Aligned_cols=21 Identities=5% Similarity=0.088 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhhhCCCCcccc
Q 008630 284 RLKSQYNYICAKFGLTTDKMT 304 (559)
Q Consensus 284 ~LKSqi~~L~~k~~~~~~~~~ 304 (559)
.+.+-+.-++..+|+-.+.++
T Consensus 528 ~t~~~Ie~~e~~~gik~GDvi 548 (652)
T COG2433 528 LTLEAIEEAEEEYGIKEGDVI 548 (652)
T ss_pred hhHHHHHhHHHhhccccCcEE
Confidence 455667777888888777766
No 232
>PF13166 AAA_13: AAA domain
Probab=90.34 E-value=40 Score=38.96 Aligned_cols=12 Identities=25% Similarity=0.285 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCC
Q 008630 319 RRNPIPFPDKHS 330 (559)
Q Consensus 319 ~~~~~~~~~~~~ 330 (559)
....|||||+-|
T Consensus 527 ~~~iiViDDPIS 538 (712)
T PF13166_consen 527 KKKIIVIDDPIS 538 (712)
T ss_pred cCceEEECCCCC
Confidence 467888999854
No 233
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=90.33 E-value=3.4 Score=35.56 Aligned_cols=72 Identities=10% Similarity=0.069 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008630 219 KQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFG 297 (559)
Q Consensus 219 ~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~ 297 (559)
+..++.+|...-..+.-|+-++++++++-..+..+.+.++..-..+ .++..-++.+...+++.+..|.+|+.
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L-------~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREEL-------ERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566777777788888888888888888777777777777776666 67777778888899999999999875
No 234
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=89.86 E-value=5.8 Score=40.49 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=18.5
Q ss_pred HHHHHHHHHH-HHHHH--HHHHHHHhHHHHHHHHHHHHHHHHhh
Q 008630 65 KEMQKGLIQL-AQSKA--CEIKKKCDQLEEHEEKTKTLIAELNS 105 (559)
Q Consensus 65 ~el~~~l~~~-~~~~~--keL~~~Qk~L~Ele~kI~~le~e~k~ 105 (559)
+||.|.|+.- ++++. ..|.++...+.++..+......++.-
T Consensus 110 kEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~Ekee 153 (290)
T COG4026 110 KELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEE 153 (290)
T ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666543 22222 23445555555554444444433333
No 235
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=89.58 E-value=39 Score=37.65 Aligned_cols=76 Identities=14% Similarity=0.109 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 124 VAREKELTENLFKKIEKL-SLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQ 199 (559)
Q Consensus 124 Iee~kekleeL~~eIe~L-e~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQ 199 (559)
|+.-..+..++.-..++- .-+.+.++..+.-++.+..++++-+..++.....|.+........|..++.++..+++
T Consensus 277 l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~ 353 (502)
T KOG0982|consen 277 LSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQK 353 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 333333334433333333 2233333344444444444444444444444444444444444444444444444433
No 236
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=89.55 E-value=23 Score=35.04 Aligned_cols=85 Identities=12% Similarity=0.182 Sum_probs=44.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 79 ACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVARE-----KELTENLFKKIEKLSLDISHYKQLLA 153 (559)
Q Consensus 79 ~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~-----kekleeL~~eIe~Le~eie~~e~eLe 153 (559)
.+.|.++...+..+...+....+..+.++.++..++.....+....... ..+...+..++..++..+..++..++
T Consensus 29 ~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~ 108 (221)
T PF04012_consen 29 EQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLD 108 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666766666666666666555555544332 22333333333333333344444444
Q ss_pred HHHHHHHHHH
Q 008630 154 DEKKEKKCFL 163 (559)
Q Consensus 154 e~EkEkeel~ 163 (559)
.+...+..++
T Consensus 109 ~~~~~~~~l~ 118 (221)
T PF04012_consen 109 QAEAQVEKLK 118 (221)
T ss_pred HHHHHHHHHH
Confidence 4333333333
No 237
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.53 E-value=7.2 Score=44.77 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 173 VSRLQEELTKKTEEVEEGRKLQEQLL 198 (559)
Q Consensus 173 v~eLqekl~q~ekEIselr~~iq~Le 198 (559)
+..+++.|..++.++.+....++.|.
T Consensus 476 i~~~~~~I~~L~~~L~e~~~~ve~L~ 501 (652)
T COG2433 476 IRARDRRIERLEKELEEKKKRVEELE 501 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444333333333333
No 238
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=89.52 E-value=16 Score=33.24 Aligned_cols=42 Identities=10% Similarity=0.204 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 008630 167 EVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEI 208 (559)
Q Consensus 167 e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei 208 (559)
......+.+|+.+|..+...+.........++.++...+.++
T Consensus 54 ~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~dk 95 (107)
T PF09304_consen 54 ASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQKDK 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444444444444444444443333334444433333333
No 239
>KOG0965 consensus Predicted RNA-binding protein, contains SWAP and G-patch domains [General function prediction only]
Probab=89.51 E-value=0.078 Score=61.01 Aligned_cols=153 Identities=5% Similarity=-0.144 Sum_probs=134.0
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHH------HHhhhHHHHHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHH
Q 008630 7 QKQQAVEENKTLKFDKAKLLQEQ------EEKTGQLLVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKAC 80 (559)
Q Consensus 7 ~~~~~~~e~~~l~~~~~~l~~~~------e~~~~~~~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~k 80 (559)
..+.++++.+++++++..|+|.+ ++++++++.-+.++.++...+| ++..+...+..+|...+++...
T Consensus 58 ~~~~~~~d~rd~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~s~~~q-------e~~~~~s~v~~~~~~~~~~~~~ 130 (988)
T KOG0965|consen 58 DLEFSHSDSRDQVIGHRKLGHFRSQDWKFALRGSWEQDFGHPVSQESSWSQ-------EYSFGPSAVLGDFGSSRLIEKE 130 (988)
T ss_pred hhhhhccchHHHHHHHHHhhhhcchhhhhhccCceeeecCcchhhhhHHHH-------HhhcCcchhhhhhhhHHHHHHH
Confidence 35678999999999999999988 8999999999999999999999 8888889999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 81 EIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKK 160 (559)
Q Consensus 81 eL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEke 160 (559)
.+++-.+.+.........+.....+.++..-.+.+-+.+...++.+++....-+.........+|.....++..+++++.
T Consensus 131 ~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~gr~~~i~~q~~~~~~~g~t~~~~~~~~~~~~~~~~~n~~~k~~~~~~~~t 210 (988)
T KOG0965|consen 131 CLEKESRDYDVDHPGEADSVLRGSSQVQARGRALNIVDQEGSLLGKGETQGLLTAKGGVGKLVTLRNVSTKKIPTVNRIT 210 (988)
T ss_pred HhhhcccccccCCchhhhhhhhhhHHHHhhhHHHHHHHhhhhhhccchhhhhhhhcCcceeEeeecccccccCCcccccc
Confidence 99999999999999999999999999999999999999999999999988888777666556667777777777777665
Q ss_pred HHHHHH
Q 008630 161 CFLTKF 166 (559)
Q Consensus 161 el~ek~ 166 (559)
-.....
T Consensus 211 ~~~~~~ 216 (988)
T KOG0965|consen 211 PKTQGT 216 (988)
T ss_pred cccccc
Confidence 554443
No 240
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=89.46 E-value=21 Score=34.54 Aligned_cols=115 Identities=16% Similarity=0.163 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH----HHHHHHHHHH
Q 008630 150 QLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF----EKEKQLLLDK 225 (559)
Q Consensus 150 ~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL----EkE~~el~kk 225 (559)
.-+...+..++++-...+..+.++..++++|.++..+|...=...+.|......-...+......+ +.+....=..
T Consensus 6 ~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~ 85 (159)
T PF05384_consen 6 KTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEE 85 (159)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHH
Confidence 344555555666666666666666666666666666666666666665555443333333333333 5555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHH
Q 008630 226 VRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQK 264 (559)
Q Consensus 226 ie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k 264 (559)
..+++-.+.-+.++...|..+...++..+..+..-|+..
T Consensus 86 A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierA 124 (159)
T PF05384_consen 86 AHELQVRLAMLREREKQLRERRDELERRLRNLEETIERA 124 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666555555555555555555555544
No 241
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=89.43 E-value=17 Score=37.06 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 008630 155 EKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSE 207 (559)
Q Consensus 155 ~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~E 207 (559)
|.+++.++-.-+..++..+.+...........|..+...+..|..+++.+-.+
T Consensus 51 h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 51 HVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333
No 242
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.33 E-value=6.5 Score=33.27 Aligned_cols=61 Identities=20% Similarity=0.290 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 89 LEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYK 149 (559)
Q Consensus 89 L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e 149 (559)
+..++.+|.....-|..|+-++.+|.++...++.|........+.|..+.+.+..+-..++
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQ 66 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888889999999999999999998888888888777777776666644433333
No 243
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=89.32 E-value=27 Score=35.49 Aligned_cols=48 Identities=25% Similarity=0.355 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhhhhhcchhhhHH-HHHHHHHHHHHHHHHHHHHHH
Q 008630 230 EEKANELKKNFCEKSSKQGWGMDSNDK-LLQEIEQKTAELMAEKKKRRD 277 (559)
Q Consensus 230 ~ek~eeLq~eieelkekL~~~e~eiee-L~eqL~~k~~el~~e~rKl~~ 277 (559)
+..+..|...++.+........+.... +.+.|..+...|.+|..-+.+
T Consensus 174 e~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~R~~ 222 (247)
T PF06705_consen 174 ESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQEREQ 222 (247)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555444444444 666666666666666655543
No 244
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=89.31 E-value=27 Score=35.54 Aligned_cols=38 Identities=11% Similarity=0.103 Sum_probs=25.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 008630 59 KEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKT 96 (559)
Q Consensus 59 ~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI 96 (559)
..+..|..+-+.|...+.-.+..-..+-+.|..+-.+-
T Consensus 12 ~r~k~g~~~~~el~~f~keRa~IEe~Yak~L~kLakk~ 49 (261)
T cd07648 12 HNMKHGQIAVKELADFLRERATIEETYSKALNKLAKQA 49 (261)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556667777777777777777777777666665543
No 245
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=89.13 E-value=52 Score=38.57 Aligned_cols=132 Identities=22% Similarity=0.224 Sum_probs=71.6
Q ss_pred HHHHHHHHHh-HhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHH
Q 008630 49 ELKQELEFKS-KEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVARE 127 (559)
Q Consensus 49 ~l~~~~~~k~-~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~ 127 (559)
.|+++...-+ ..|+++.+.+.+|++-|-.--+++.+....|.+...-.......-..|.+.+..|.-.+..+..+..+-
T Consensus 43 ~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR 122 (660)
T KOG4302|consen 43 RLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDER 122 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433322 456777888888888777766666666666554432222011111134444444444444444444444
Q ss_pred HHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 128 KELTENLFKKIEKL----------------------SLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEEL 180 (559)
Q Consensus 128 kekleeL~~eIe~L----------------------e~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl 180 (559)
...+.++...|+.| ...++.+...|..+++++..=++++.++..++..|...|
T Consensus 123 ~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~L 197 (660)
T KOG4302|consen 123 RAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVL 197 (660)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555555 356666666666666666666666666655555555444
No 246
>PLN03188 kinesin-12 family protein; Provisional
Probab=89.11 E-value=71 Score=40.04 Aligned_cols=136 Identities=16% Similarity=0.160 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHhhhhHHHHHhHHHHHH
Q 008630 151 LLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQ-------------QIDFKSSEITKNKQEFEK 217 (559)
Q Consensus 151 eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQ-------------eLE~~~~Ei~kle~ELEk 217 (559)
--+++.++++..+.-+.-+-+.+.+||++..++-..=-.++.-|+..+. =++-+..++..++.+.|+
T Consensus 1094 c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~erek 1173 (1320)
T PLN03188 1094 CAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREK 1173 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666555555666666666666655544444444444433 245566777777777688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008630 218 EKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFG 297 (559)
Q Consensus 218 E~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~ 297 (559)
|...+...-..|+..+...-..+.... +|+-+|.+..--+-..+++--+...|-..++.+|+.|.+|..
T Consensus 1174 er~~~~~enk~l~~qlrdtaeav~aag-----------ellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~ 1242 (1320)
T PLN03188 1174 ERRYLRDENKSLQAQLRDTAEAVQAAG-----------ELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHE 1242 (1320)
T ss_pred HHHHHHHhhHHHHHHHhhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777777777776655554443 444444443333333345555555566677777777777764
No 247
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=88.99 E-value=17 Score=40.04 Aligned_cols=42 Identities=12% Similarity=0.058 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 008630 150 QLLADEKKEKKCFLTKFEVF-EENVSRLQEELTKKTEEVEEGR 191 (559)
Q Consensus 150 ~eLee~EkEkeel~ek~e~l-eeEv~eLqekl~q~ekEIselr 191 (559)
.++.+++.++..+.++.+.. .++...+++.+-.+...|+.++
T Consensus 276 ~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 276 NEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544 6667777777777777777766
No 248
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=88.92 E-value=18 Score=35.68 Aligned_cols=115 Identities=26% Similarity=0.340 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008630 170 EENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEFEKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGW 249 (559)
Q Consensus 170 eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~ELEkE~~el~kkie~l~ek~eeLq~eieelkekL~~ 249 (559)
-+....++..+..+.+++...+..+..+...++.....+.. ..+-..++.+++.+...+..|++++.... ..
T Consensus 61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~-----~~eR~~~l~~l~~l~~~~~~l~~el~~~~---~~ 132 (188)
T PF03962_consen 61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREE-----SEEREELLEELEELKKELKELKKELEKYS---EN 132 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hc
Confidence 55566666666667767766666666666665554322211 23444455666666666666665555332 12
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCcc
Q 008630 250 GMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFGLTTDK 302 (559)
Q Consensus 250 ~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~~~~~~ 302 (559)
--+.++.+.+.+... ....+.--. -.-+...|+++|||....-
T Consensus 133 Dp~~i~~~~~~~~~~-------~~~anrwTD---NI~~l~~~~~~k~~~~~~~ 175 (188)
T PF03962_consen 133 DPEKIEKLKEEIKIA-------KEAANRWTD---NIFSLKSYLKKKFGMDEED 175 (188)
T ss_pred CHHHHHHHHHHHHHH-------HHHHHHHHh---hHHHHHHHHHHhcCCCHHH
Confidence 223444444444444 222222222 2234556788889865543
No 249
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=88.59 E-value=19 Score=32.81 Aligned_cols=30 Identities=7% Similarity=0.275 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 162 FLTKFEVFEENVSRLQEELTKKTEEVEEGR 191 (559)
Q Consensus 162 l~ek~e~leeEv~eLqekl~q~ekEIselr 191 (559)
+...+..++.........+..++.+|++++
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~ 71 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEAR 71 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 250
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=88.58 E-value=51 Score=37.70 Aligned_cols=62 Identities=23% Similarity=0.232 Sum_probs=38.2
Q ss_pred HHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHH
Q 008630 38 VKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACE----IKKKCDQLEEHEEKTKTL 99 (559)
Q Consensus 38 ~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~ke----L~~~Qk~L~Ele~kI~~l 99 (559)
--+.+.-.-|.+|..--++-+++|...++||..|..-|-.-+-. +....+.|..+...+..+
T Consensus 118 ~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~~lEk~Le~i~~~l~qf 183 (570)
T COG4477 118 EDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGEAAPELEKKLENIEEELSQF 183 (570)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 33444444556666667778899999999999998877654433 333344444444444443
No 251
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.55 E-value=52 Score=37.75 Aligned_cols=123 Identities=17% Similarity=0.203 Sum_probs=83.8
Q ss_pred HhHHHHH----HHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhh
Q 008630 45 CEINELK----QELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAK 120 (559)
Q Consensus 45 ~~~~~l~----~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl 120 (559)
-.|+-|+ +.-+++.++|+.+.-=-..|-..|-.+..++.++-..+..|.+.-..+-+-.--+.+++..|+--+.+.
T Consensus 313 r~IerLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqk 392 (654)
T KOG4809|consen 313 RIIERLKEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQK 392 (654)
T ss_pred HHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence 4455554 235677888887765556676677666678888888888888888888888888888888888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 121 TEEVAREKELTENLFKKIEKL-------------SLDISHYKQLLADEKKEKKCFLTKFE 167 (559)
Q Consensus 121 ~EEIee~kekleeL~~eIe~L-------------e~eie~~e~eLee~EkEkeel~ek~e 167 (559)
.+++......+..+-+..+.- +++...++..+.....+++++++.+.
T Consensus 393 kEec~kme~qLkkAh~~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilk 452 (654)
T KOG4809|consen 393 KEECSKMEAQLKKAHNIEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILK 452 (654)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888887777655544433 44444445555555555555544443
No 252
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=88.42 E-value=26 Score=38.94 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHH
Q 008630 76 QSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVD 111 (559)
Q Consensus 76 ~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~ 111 (559)
+.-.+.+.++|+.|+....+-+....++.-|+.++.
T Consensus 255 q~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ 290 (575)
T KOG4403|consen 255 QRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLD 290 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHh
Confidence 445567788888888888888888888888887777
No 253
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.38 E-value=51 Score=37.47 Aligned_cols=38 Identities=29% Similarity=0.323 Sum_probs=19.1
Q ss_pred HHhHHHHHHHHHHHhHhhhhH---HHHHHHHHHHHHHHHHHHHH
Q 008630 44 RCEINELKQELEFKSKEVEGV---KEMQKGLIQLAQSKACEIKK 84 (559)
Q Consensus 44 ~~~~~~l~~~~~~k~~~v~~~---~el~~~l~~~~~~~~keL~~ 84 (559)
+.+||.|+.-+.+.+.|--+- |+.+. +-|++++.+++.
T Consensus 126 q~~~d~l~~~~~fle~Ek~d~e~~m~~~~---~q~Esls~~le~ 166 (613)
T KOG0992|consen 126 QIEIDKLKNLLSFLEQEKVDREGLMRQQT---QQIESLSEELER 166 (613)
T ss_pred HHhHHHHHHHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHh
Confidence 456666666666664443222 33332 445555555544
No 254
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=88.24 E-value=33 Score=40.29 Aligned_cols=26 Identities=4% Similarity=-0.001 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008630 272 KKKRRDVIDAYKRLKSQYNYICAKFG 297 (559)
Q Consensus 272 ~rKl~~l~~eyk~LKSqi~~L~~k~~ 297 (559)
++.+..+..+++..+..|..|..|..
T Consensus 369 e~~~~~L~R~~~~~~~lY~~lL~r~~ 394 (726)
T PRK09841 369 QQEVLRLSRDVEAGRAVYLQLLNRQQ 394 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666667777777666654
No 255
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.20 E-value=33 Score=35.15 Aligned_cols=134 Identities=15% Similarity=0.158 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 158 EKKCFLTKFEVF-EENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEFEKEKQLLLDKVRGLEEKANEL 236 (559)
Q Consensus 158 Ekeel~ek~e~l-eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~ELEkE~~el~kkie~l~ek~eeL 236 (559)
.+..++..++.. +....++-+.+......+++......++.+-+...++++.+..+ | +.+-....-.++..+..+
T Consensus 23 ~i~n~~s~~D~f~q~~r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~ne-L---~~ek~~~q~~ieqeik~~ 98 (246)
T KOG4657|consen 23 DIHNQRSKIDSFIQSPRRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNE-L---KTEKEARQMGIEQEIKAT 98 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHH
Confidence 444455555444 44455555666666666777777777777777777666655543 3 111112222233334444
Q ss_pred HHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH------HHHHHhhhCCCCccc
Q 008630 237 KKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKK--RRDVIDAYKRLKSQ------YNYICAKFGLTTDKM 303 (559)
Q Consensus 237 q~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rK--l~~l~~eyk~LKSq------i~~L~~k~~~~~~~~ 303 (559)
+++++.+..-++.+..+..-+++-|..+ +. ..+.-+..++++.- ..++...+||...-|
T Consensus 99 q~elEvl~~n~Q~lkeE~dd~keiIs~k--------r~~~~Ka~e~~~kRkQdsa~~~e~a~wy~dyLGleie~~ 165 (246)
T KOG4657|consen 99 QSELEVLRRNLQLLKEEKDDSKEIISQK--------RQALSKAKENAGKRKQDSADIHEAASWYNDYLGLEIEAG 165 (246)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH--------HHHHHHHHHHHHHHHhhhhccHHHHHHHHHhcCceeeec
Confidence 4444444333333333333333333333 11 23344455566655 778889999887654
No 256
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.64 E-value=30 Score=39.04 Aligned_cols=68 Identities=18% Similarity=0.187 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhH
Q 008630 145 ISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNK 212 (559)
Q Consensus 145 ie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle 212 (559)
++++...|....+++..-+.+++...+++.+|+..-...-.+|++++..+..|..||=++..-+.-++
T Consensus 336 F~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr 403 (508)
T KOG3091|consen 336 FEDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILR 403 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35556666667777777888888888888888888888888999999999999988877655444444
No 257
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=87.62 E-value=60 Score=37.41 Aligned_cols=30 Identities=27% Similarity=0.343 Sum_probs=13.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 008630 110 VDELQRQLGAKTEEVAREKELTENLFKKIE 139 (559)
Q Consensus 110 L~~Leek~~kl~EEIee~kekleeL~~eIe 139 (559)
.+...+++....+.+......++.+..++.
T Consensus 343 ~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~ 372 (607)
T KOG0240|consen 343 AEEWKRKLEKKKDKNVALKEELEKLRNSLK 372 (607)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444444444
No 258
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=87.57 E-value=15 Score=43.07 Aligned_cols=28 Identities=18% Similarity=-0.021 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 216 EKEKQLLLDKVRGLEEKANELKKNFCEK 243 (559)
Q Consensus 216 EkE~~el~kkie~l~ek~eeLq~eieel 243 (559)
+.++..+....+..+..|+.|-++.+++
T Consensus 369 e~~~~~L~R~~~~~~~lY~~lL~r~~e~ 396 (726)
T PRK09841 369 QQEVLRLSRDVEAGRAVYLQLLNRQQEL 396 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555554444443
No 259
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=87.51 E-value=39 Score=35.22 Aligned_cols=61 Identities=16% Similarity=0.264 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHH
Q 008630 65 KEMQKGLIQLAQSKACE-IKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREK 128 (559)
Q Consensus 65 ~el~~~l~~~~~~~~ke-L~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~k 128 (559)
-+.+-+.+.-|++.... ++..+.+|.+.+++ .++++..|+.++..|+.+.....+++.-+.
T Consensus 47 y~~~~~~i~~le~~~~~~l~~ak~eLqe~eek---~e~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 47 YDIYRTAIDILEYSNHKQLQQAKAELQEWEEK---EESKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666665544 66666666666543 345555666666666666666666555543
No 260
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=87.24 E-value=48 Score=35.90 Aligned_cols=125 Identities=14% Similarity=0.167 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH---HHHHHHHHHH
Q 008630 149 KQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF---EKEKQLLLDK 225 (559)
Q Consensus 149 e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL---EkE~~el~kk 225 (559)
...+++++.+-++++...+.+..++...+.-+.+.-.++..+...+..+.++-..++-.+....++. +.+.+.+...
T Consensus 91 ~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrE 170 (401)
T PF06785_consen 91 RESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRE 170 (401)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHH
Confidence 3444455555555555555554445444444444444444444444444444333333333333333 3333444344
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 226 VRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYK 283 (559)
Q Consensus 226 ie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk 283 (559)
+.+...-...|-.++ +..+.+-...+..-...|..+ .+|.+|+--|+.
T Consensus 171 LaE~layqq~L~~ey---Qatf~eq~~ml~kRQ~yI~~L-------EsKVqDLm~Eir 218 (401)
T PF06785_consen 171 LAEALAYQQELNDEY---QATFVEQHSMLDKRQAYIGKL-------ESKVQDLMYEIR 218 (401)
T ss_pred HHHHHHHHHHHHHHh---hcccccchhhhHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 443333333332222 333444444555555556665 666665544443
No 261
>PRK10869 recombination and repair protein; Provisional
Probab=87.18 E-value=61 Score=37.06 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 008630 70 GLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQ 116 (559)
Q Consensus 70 ~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek 116 (559)
.+++.++..-..+....+.|.++.........++.+++-++.+++.-
T Consensus 154 ~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~ 200 (553)
T PRK10869 154 SLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEF 200 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhC
Confidence 34455555555555566666666665555666666666555555543
No 262
>PRK09343 prefoldin subunit beta; Provisional
Probab=87.16 E-value=23 Score=32.48 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 008630 70 GLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQ 114 (559)
Q Consensus 70 ~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Le 114 (559)
+|-..||.....|+..+..+..+...+..++..++.++.=+.+|.
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~ 48 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELE 48 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666667777777666666666666665555444444443
No 263
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=87.14 E-value=70 Score=37.68 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=12.1
Q ss_pred HHHhHHHhHHHHHHHHHHHhHhhhh
Q 008630 39 KLESQRCEINELKQELEFKSKEVEG 63 (559)
Q Consensus 39 ~~~sl~~~~~~l~~~~~~k~~~v~~ 63 (559)
.+.+++.++..+...+..-...+..
T Consensus 108 ~~~~~q~~~~~~~~~l~~~~~~~~~ 132 (670)
T KOG0239|consen 108 LLSELQSNLSELNMALLESVEELSQ 132 (670)
T ss_pred hccccccchhhhhhhhhhhhHhhhh
Confidence 3344555555555554444444444
No 264
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=87.10 E-value=55 Score=36.43 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhHHHHHhHHH
Q 008630 174 SRLQEELTKKTEEVEEGRKLQ-EQLLQQIDFKSSEITKNKQE 214 (559)
Q Consensus 174 ~eLqekl~q~ekEIselr~~i-q~LeQeLE~~~~Ei~kle~E 214 (559)
.+|.+.--++++.++.-+..+ ..|-++++.+..+..-+...
T Consensus 182 eQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~K 223 (552)
T KOG2129|consen 182 EQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKK 223 (552)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333322 34555666665555555444
No 265
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=87.06 E-value=16 Score=33.90 Aligned_cols=93 Identities=12% Similarity=0.123 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH--HhHHHH------HHHHHHHHHHHHHHH
Q 008630 159 KKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEIT--KNKQEF------EKEKQLLLDKVRGLE 230 (559)
Q Consensus 159 keel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~--kle~EL------EkE~~el~kkie~l~ 230 (559)
++....+++.++.++..+-.+..+++.++.+....+.. ++.+..|.- +.=-.+ +.-+.++..+++.++
T Consensus 8 ~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~E----le~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le 83 (119)
T COG1382 8 VQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEE----LEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLE 83 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHH
Confidence 34455555555555666655666665555554333332 222333210 000111 444455555555555
Q ss_pred HHHHHHHHHHHHHhhhhhcchhhhH
Q 008630 231 EKANELKKNFCEKSSKQGWGMDSND 255 (559)
Q Consensus 231 ek~eeLq~eieelkekL~~~e~eie 255 (559)
-++..|....+.+.+++..+...|.
T Consensus 84 ~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 84 LRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555444444444443
No 266
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=87.05 E-value=7.9 Score=32.74 Aligned_cols=64 Identities=19% Similarity=0.137 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008630 220 QLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFG 297 (559)
Q Consensus 220 ~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~ 297 (559)
..++.+|..+-+.+..|+.++++++.+-..+..+...|.+....+ +.++..+++.++.|.+|+.
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L--------------~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQL--------------KQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhhh
Confidence 445555555555666665555555555554444444444443333 4666677777777777764
No 267
>PRK11519 tyrosine kinase; Provisional
Probab=87.04 E-value=21 Score=41.91 Aligned_cols=21 Identities=14% Similarity=0.052 Sum_probs=7.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHH
Q 008630 111 DELQRQLGAKTEEVAREKELT 131 (559)
Q Consensus 111 ~~Leek~~kl~EEIee~kekl 131 (559)
.||++++..+..+++..+..+
T Consensus 270 ~fL~~ql~~l~~~L~~aE~~l 290 (719)
T PRK11519 270 AFLAQQLPEVRSRLDVAENKL 290 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 268
>PF14992 TMCO5: TMCO5 family
Probab=86.98 E-value=27 Score=36.75 Aligned_cols=39 Identities=31% Similarity=0.259 Sum_probs=27.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 008630 80 CEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLG 118 (559)
Q Consensus 80 keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~ 118 (559)
..+...+..|.+++.++..++-+-..+..++..|+.+..
T Consensus 56 ~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~ 94 (280)
T PF14992_consen 56 IISEERETDLQELELETAKLEKENEHLSKSVQELQRKQD 94 (280)
T ss_pred hhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhc
Confidence 334456666777777777777777777777777776644
No 269
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=86.89 E-value=31 Score=33.42 Aligned_cols=28 Identities=7% Similarity=-0.120 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcchhhh
Q 008630 227 RGLEEKANELKKNFCEKSSKQGWGMDSN 254 (559)
Q Consensus 227 e~l~ek~eeLq~eieelkekL~~~e~ei 254 (559)
+..+.-+...-.-++.+...+......+
T Consensus 122 erAE~l~sqi~vvl~yL~~dl~~v~~~~ 149 (159)
T PF05384_consen 122 ERAENLVSQIGVVLNYLSGDLQQVSEQI 149 (159)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3333333333333444444443333333
No 270
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=86.73 E-value=44 Score=35.00 Aligned_cols=57 Identities=23% Similarity=0.309 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHH
Q 008630 172 NVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEFEKEKQLLLDKVRG 228 (559)
Q Consensus 172 Ev~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~ELEkE~~el~kkie~ 228 (559)
+...|..+|-+...++...+..++.|+.-.=-...+-.+++.||..-+..+..+...
T Consensus 191 de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRN 247 (267)
T PF10234_consen 191 DEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRN 247 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444333333333333333333333333345555555554445555544444
No 271
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.68 E-value=42 Score=37.57 Aligned_cols=53 Identities=13% Similarity=0.078 Sum_probs=20.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 110 VDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCF 162 (559)
Q Consensus 110 L~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel 162 (559)
+....+....+..+...++.....+......++..+.++..+++...+++..+
T Consensus 349 len~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~ 401 (493)
T KOG0804|consen 349 LENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEE 401 (493)
T ss_pred HHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444343333333333333333344444444444333333
No 272
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=85.87 E-value=81 Score=37.20 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=32.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 008630 79 ACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIE 139 (559)
Q Consensus 79 ~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe 139 (559)
..++...+.....+..++...+..++.+.+-+..++.-+..-...++..-.++..|.+++.
T Consensus 379 Q~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q~~L~s~ma~ve~a~aRL~sL~~RlS 439 (739)
T PF07111_consen 379 QAELSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQWLESQMAKVEQALARLPSLSNRLS 439 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444444444444555555555666666666666555555555555554445555444444
No 273
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=85.82 E-value=70 Score=36.45 Aligned_cols=170 Identities=17% Similarity=0.196 Sum_probs=93.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 80 CEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEK 159 (559)
Q Consensus 80 keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEk 159 (559)
.+|+.+.++++.+-+.+..+.+.+-.+++++..+-.....+.+=+-.-+.....+..+..+++-.+++..+.+.+.+.++
T Consensus 219 eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeEL 298 (596)
T KOG4360|consen 219 EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEEL 298 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555565555555555555555566666677777777777777777788888777
Q ss_pred HHHHHHHH------HH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH-----
Q 008630 160 KCFLTKFE------VF-------------EENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF----- 215 (559)
Q Consensus 160 eel~ek~e------~l-------------eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL----- 215 (559)
..++..-. .+ .+.+.-+-++-+++..+++-+.+.-+.-+.+|-.+...+-.-.++.
T Consensus 299 k~lrs~~~p~~~s~~~~~~~~~fp~~~~aae~i~lt~r~~~qldee~s~~~t~~~~eq~~I~e~ve~i~~ts~q~a~l~~ 378 (596)
T KOG4360|consen 299 KCLRSCDAPKLISQEALSHGHHFPQLSLAAEKIELTMRKNLQLDEEASQLDTLEDEEQKRIFETVEQINETSQQMAELPE 378 (596)
T ss_pred HhhccCCCcchhHHHHHHhhhhCChhhHHHHHHHHhhhhhhccccccccCCccchHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77765321 11 2223444455556666666666544444555554444444444331
Q ss_pred -----HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhhhc
Q 008630 216 -----EKEKQLLLDKVRG-------LEEKANELKKNFCEKSSKQGW 249 (559)
Q Consensus 216 -----EkE~~el~kkie~-------l~ek~eeLq~eieelkekL~~ 249 (559)
-..+.-....+.+ ++.+++....+.+.+...+..
T Consensus 379 ~l~i~~~ny~~~~~tv~~~~v~tp~lqq~~n~~~aETe~ls~~~ae 424 (596)
T KOG4360|consen 379 VLVIPGSNYSSQQQTVARLQVQTPKLQQRCNMYGAETEKLSKQLAE 424 (596)
T ss_pred cccCCcchhhhhhhhhhhhhccchhHHhHHHHhhhhhhhhcccccc
Confidence 2222223333333 455555555555555555554
No 274
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=85.61 E-value=33 Score=34.10 Aligned_cols=93 Identities=23% Similarity=0.224 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 65 KEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLD 144 (559)
Q Consensus 65 ~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~e 144 (559)
+-|+-+|-++|..+..- .........++.++.........++..+..|+.+..++.++........+....+|.++++.
T Consensus 89 ~~l~~RL~kLL~lk~~~-~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~ 167 (190)
T PF05266_consen 89 KFLRSRLNKLLSLKDDQ-EKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSE 167 (190)
T ss_pred HHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666555432 22333444555566666666666666677777666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHH
Q 008630 145 ISHYKQLLADEKKE 158 (559)
Q Consensus 145 ie~~e~eLee~EkE 158 (559)
...+...+.+++-+
T Consensus 168 ~~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 168 AEALKEEIENAELE 181 (190)
T ss_pred HHHHHHHHHHHHHH
Confidence 65555555554443
No 275
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=85.61 E-value=9.8 Score=38.91 Aligned_cols=11 Identities=9% Similarity=0.232 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q 008630 64 VKEMQKGLIQL 74 (559)
Q Consensus 64 ~~el~~~l~~~ 74 (559)
|++|+.+++.-
T Consensus 71 GReLA~kf~ee 81 (290)
T COG4026 71 GRELAEKFFEE 81 (290)
T ss_pred hHHHHHHHHHH
Confidence 35555555443
No 276
>PRK11519 tyrosine kinase; Provisional
Probab=85.53 E-value=66 Score=37.86 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 132 ENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFE 167 (559)
Q Consensus 132 eeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e 167 (559)
.....-++.|+..+..++.+|+..|.+++..+.+..
T Consensus 263 ~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~ 298 (719)
T PRK11519 263 EEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKD 298 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334445555555555666666666666555554443
No 277
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.22 E-value=42 Score=37.96 Aligned_cols=74 Identities=14% Similarity=0.159 Sum_probs=47.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 96 TKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVF 169 (559)
Q Consensus 96 I~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~l 169 (559)
.+...-.++...+++.+|+....-..-.|++.++++.+|.++|-++.-.++.++..=-.+....++|+.+++.+
T Consensus 350 ~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtl 423 (508)
T KOG3091|consen 350 VKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTL 423 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHH
Confidence 33334444555566777777777778899999999999999999985444444432223334445566666655
No 278
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=85.20 E-value=22 Score=37.84 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=38.2
Q ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 103 LNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKK 160 (559)
Q Consensus 103 ~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEke 160 (559)
+.-+...|.++++++++.+---+++-+--..+.++++.|.-.+++++..+..+..+..
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~ 136 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYR 136 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344667777788888877777777777777777777775555555555555444443
No 279
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=85.01 E-value=54 Score=34.43 Aligned_cols=107 Identities=21% Similarity=0.262 Sum_probs=47.4
Q ss_pred HHhhhHHH---HHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhH
Q 008630 30 EEKTGQLL---VKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSH 106 (559)
Q Consensus 30 e~~~~~~~---~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~l 106 (559)
+.+...+. .-|.+.+-+|+-|.+ +-.+|.++++...+--.. ..+...+.+.+............+++..
T Consensus 148 ~~dl~e~~~~l~DLesa~vkV~WLR~----~L~Ei~Ea~e~~~~~~~~----e~eke~~~r~l~~~~~ELe~~~EeL~~~ 219 (269)
T PF05278_consen 148 ESDLKEMIATLKDLESAKVKVDWLRS----KLEEILEAKEIYDQHETR----EEEKEEKDRKLELKKEELEELEEELKQK 219 (269)
T ss_pred HHHHHHHHHHHHHHHHcCcchHHHHH----HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444 445555677777765 445576766655431111 1111222222233333333333444444
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 107 KKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLD 144 (559)
Q Consensus 107 eerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~e 144 (559)
++++..+..+.....+.+.+++...-.+.+.+..+.+.
T Consensus 220 Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sK 257 (269)
T PF05278_consen 220 EKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSK 257 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444333
No 280
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=84.90 E-value=70 Score=35.64 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=18.3
Q ss_pred hcccccccCCCCccccc---cCCCC--CCCCCCccccCCCCC
Q 008630 360 SVQTSSFHSSSSGFIVT---EKCPS--NVKSAPIAGTKRPAS 396 (559)
Q Consensus 360 ~~~~~~~~~~~~~~~~~---~~~~~--~~k~~~~~~~~~p~~ 396 (559)
+.+.-++-||.|..... +.+|. +.--.+++|..||++
T Consensus 356 as~~vs~~sPvs~t~s~~s~~~SPg~~vq~~~~t~g~~r~~~ 397 (552)
T KOG2129|consen 356 ASPNVSANSPVSNTNSPASSTSSPGVRVQDQQSTSGYRRQLN 397 (552)
T ss_pred CCCccccCCCcccCCCcccccCCCceeeccccccccccccCc
Confidence 34555666776655432 23332 122234556666665
No 281
>PLN02939 transferase, transferring glycosyl groups
Probab=84.86 E-value=1.1e+02 Score=37.70 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 008630 89 LEEHEEKTKTLIAELNSHKKIVDELQRQ 116 (559)
Q Consensus 89 L~Ele~kI~~le~e~k~leerL~~Leek 116 (559)
+..+..++..++.++++|+.++.+-..+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (977)
T PLN02939 158 LEKILTEKEALQGKINILEMRLSETDAR 185 (977)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhhhh
Confidence 4445556667888888888888775433
No 282
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=84.78 E-value=80 Score=36.19 Aligned_cols=96 Identities=17% Similarity=0.222 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 119 AKTEEVAREKELTENLFKKIEKL----------SLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVE 188 (559)
Q Consensus 119 kl~EEIee~kekleeL~~eIe~L----------e~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIs 188 (559)
-+.+-+...+....+|..+|+++ .+-....+..|++++.-+..+.+.++....-+..++..+..+.+.+.
T Consensus 313 ~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~ 392 (570)
T COG4477 313 ILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALT 392 (570)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 34444555555566666666666 33334445566666666666666665554444555555555555555
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhHHH
Q 008630 189 EGRKLQEQLLQQIDFKSSEITKNKQE 214 (559)
Q Consensus 189 elr~~iq~LeQeLE~~~~Ei~kle~E 214 (559)
.....+......+..+.++=+.-+..
T Consensus 393 ~i~~~q~~~~e~L~~LrkdEl~Are~ 418 (570)
T COG4477 393 DIEDEQEKVQEHLTSLRKDELEAREN 418 (570)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554444444433333
No 283
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=84.74 E-value=18 Score=30.53 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHH
Q 008630 89 LEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVARE 127 (559)
Q Consensus 89 L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~ 127 (559)
+..++.+|..+...+..|+.++..|+.+...+.++.+.+
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L 44 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEEL 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455666666666666666666666666555544333333
No 284
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=84.72 E-value=25 Score=31.00 Aligned_cols=66 Identities=11% Similarity=0.071 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Q 008630 150 QLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF 215 (559)
Q Consensus 150 ~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL 215 (559)
.+|...+.+.+.+......+..++..+++.+..++.+++..+..+.....-.+.+..++..+...+
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~ 68 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQL 68 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345555556666666666666667777777777777777777666666666666666666666444
No 285
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=84.67 E-value=34 Score=32.22 Aligned_cols=68 Identities=16% Similarity=0.276 Sum_probs=47.8
Q ss_pred HHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 102 ELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVF 169 (559)
Q Consensus 102 e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~l 169 (559)
.|..+-++|..|++-.....+|+-+.....+.|..++++|-++...++.-|...+..+.-+.-.++..
T Consensus 7 ~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqek 74 (134)
T PF15233_consen 7 QIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQLHCQEK 74 (134)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567777778888888999999999999999999996666677766665555544443333333
No 286
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=84.10 E-value=1.1e+02 Score=37.13 Aligned_cols=231 Identities=19% Similarity=0.126 Sum_probs=115.2
Q ss_pred HHhhhHHHHHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHH
Q 008630 30 EEKTGQLLVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKI 109 (559)
Q Consensus 30 e~~~~~~~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leer 109 (559)
+.....|.-|+.--+..-++++.++..-.-+..=..+|-.-.+.-+-+.++.+....+...++..+...+..+...++.+
T Consensus 570 eaa~e~lE~r~~~~e~~~~e~~se~e~~l~~l~l~~el~~~~~~d~ls~mkd~~~~~q~~~EL~~q~~~L~ee~~af~~~ 649 (984)
T COG4717 570 EAAYEALEGRFAAAEAAMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKDLKKLMQKKAELTHQVARLREEQAAFEER 649 (984)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555444444444455555555556666666666666666666666666666666666
Q ss_pred HHHHHHHHh-------------hhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 008630 110 VDELQRQLG-------------AKTEEVAREKELT-ENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVF-EENVS 174 (559)
Q Consensus 110 L~~Leek~~-------------kl~EEIee~kekl-eeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~l-eeEv~ 174 (559)
+..|-.-.. ++.-..+..++.. -++.+.+..+..-+..++.++..+.+++..+..-...- +.++.
T Consensus 650 v~~l~~~~e~~~~~ls~~~~~~r~~~~~e~~~Ee~r~~le~~~~~t~El~~~L~ae~~~~~kei~dLfd~~~~~~ed~F~ 729 (984)
T COG4717 650 VEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLALEGNIERTKELNDELRAELELHRKEILDLFDCGTADTEDAFR 729 (984)
T ss_pred HHHhhhhhhcccchhHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcHHHHH
Confidence 655443211 1111111122222 22555555555555566666666666655554333222 55555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHH-----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008630 175 RLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQE-----F-EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQG 248 (559)
Q Consensus 175 eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~E-----L-EkE~~el~kkie~l~ek~eeLq~eieelkekL~ 248 (559)
+.-+...+.+.-.+ .+..+.++++........+-.. + +++...++..++.+.+.++++.+.+-.+..+|.
T Consensus 730 e~A~~~qq~~q~~s----rl~~~~aql~~v~~~~~eL~~~~~~~~~~e~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~ 805 (984)
T COG4717 730 EAAREEQQLTQRES----RLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALDEEVEELHAQVAALSRQIA 805 (984)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHhcCCchhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444433332222 2223333333222222222222 2 556666666666666666666666555554444
Q ss_pred ---------cchhhhHHHHHHHHHH
Q 008630 249 ---------WGMDSNDKLLQEIEQK 264 (559)
Q Consensus 249 ---------~~e~eieeL~eqL~~k 264 (559)
.++...+.++.+|+.+
T Consensus 806 ~lE~g~~~a~lr~~~~slk~~l~e~ 830 (984)
T COG4717 806 QLEGGGTVAELRQRRESLKEDLEEK 830 (984)
T ss_pred HHhcCChHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666
No 287
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=83.76 E-value=66 Score=34.41 Aligned_cols=89 Identities=17% Similarity=0.227 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchh
Q 008630 176 LQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF---EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMD 252 (559)
Q Consensus 176 Lqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL---EkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~ 252 (559)
+...+.++++++...+..++..+..+..+...+..+..++ ..++..+...++....++.....=+..|..+...=..
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~ 298 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSE 298 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHH
Confidence 3444555555555555555555555555555555555555 4555666666666666666666666666666666666
Q ss_pred hhHHHHHHHHHH
Q 008630 253 SNDKLLQEIEQK 264 (559)
Q Consensus 253 eieeL~eqL~~k 264 (559)
.+..+..++..+
T Consensus 299 ~~~~l~~~~~~l 310 (344)
T PF12777_consen 299 QIEELEEQLKNL 310 (344)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhccc
Confidence 666666666554
No 288
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=83.25 E-value=32 Score=30.76 Aligned_cols=27 Identities=15% Similarity=0.274 Sum_probs=11.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 008630 78 KACEIKKKCDQLEEHEEKTKTLIAELN 104 (559)
Q Consensus 78 ~~keL~~~Qk~L~Ele~kI~~le~e~k 104 (559)
....++.++.++..+...+..++..++
T Consensus 8 ~~~~~q~~q~~~~~l~~q~~~le~~~~ 34 (110)
T TIGR02338 8 QLAQLQQLQQQLQAVATQKQQVEAQLK 34 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 289
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=83.21 E-value=39 Score=35.97 Aligned_cols=22 Identities=5% Similarity=-0.141 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008630 272 KKKRRDVIDAYKRLKSQYNYIC 293 (559)
Q Consensus 272 ~rKl~~l~~eyk~LKSqi~~L~ 293 (559)
++...-.+..|..+-..++...
T Consensus 284 ~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 284 VLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444
No 290
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=83.16 E-value=64 Score=33.84 Aligned_cols=47 Identities=17% Similarity=0.306 Sum_probs=25.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008630 251 MDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFG 297 (559)
Q Consensus 251 e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~ 297 (559)
-+=+++|.+.++--.+-++--+.+|...+.++..|+.-..-+..-+|
T Consensus 263 ~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~ 309 (330)
T KOG2991|consen 263 YDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVG 309 (330)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333333333333333333366677777777777776666666666
No 291
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=82.39 E-value=51 Score=33.55 Aligned_cols=59 Identities=19% Similarity=0.143 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 104 NSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCF 162 (559)
Q Consensus 104 k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel 162 (559)
...+++++.+......+..++..+...++.|...++.++..+...+.+++.++..++.+
T Consensus 38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444443333
No 292
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=82.33 E-value=49 Score=31.85 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 008630 222 LLDKVRGLEEKANELKKNFCEKS 244 (559)
Q Consensus 222 l~kkie~l~ek~eeLq~eieelk 244 (559)
....+..++..+..|...+..+.
T Consensus 150 ~~~~~~~l~~~i~~l~rk~~~l~ 172 (177)
T PF13870_consen 150 TKEEVEELRKEIKELERKVEILE 172 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 293
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=82.29 E-value=74 Score=35.61 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 142 SLDISHYKQLLADEKKEKKCFLTKFEVF--EENVSRLQEELTKKTEEVEEGRKLQEQLLQ 199 (559)
Q Consensus 142 e~eie~~e~eLee~EkEkeel~ek~e~l--eeEv~eLqekl~q~ekEIselr~~iq~LeQ 199 (559)
+.++...+..+......+..++.+...+ ......+-.-|.+++.++...+.++..|..
T Consensus 248 e~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~ 307 (434)
T PRK15178 248 ENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMV 307 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555555555555444 555555556666666666666666665544
No 294
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=82.22 E-value=37 Score=33.84 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCcc
Q 008630 228 GLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFGLTTDK 302 (559)
Q Consensus 228 ~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~~~~~~ 302 (559)
.+..+++.|+..++.++.++...+.--....+.+....+..+.+..+.- .-.--.++|+|+|||+.+.-
T Consensus 120 el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~~~eaanrwt------DnI~il~dy~~rkf~~e~nq 188 (203)
T KOG3433|consen 120 ELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEKTMAEAANRWT------DNIFILIDYLYRKFGLEPNQ 188 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhhhh------hhHHHHHHHHHHhcCCCHHH
Confidence 3444455555555555555544444444444444444222222222211 12234678999999987654
No 295
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=82.14 E-value=62 Score=32.92 Aligned_cols=25 Identities=16% Similarity=0.428 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Q 008630 91 EHEEKTKTLIAELNSHKKIVDELQR 115 (559)
Q Consensus 91 Ele~kI~~le~e~k~leerL~~Lee 115 (559)
.+..+...+..++..+..++..|+.
T Consensus 46 ~~~~e~~~L~~e~~~l~~e~e~L~~ 70 (251)
T PF11932_consen 46 QWDDEKQELLAEYRQLEREIENLEV 70 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 296
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=82.08 E-value=38 Score=30.43 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=18.0
Q ss_pred hhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 246 KQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYIC 293 (559)
Q Consensus 246 kL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~ 293 (559)
.......+|..|..+|..+ +..+..+...+..++---+||-
T Consensus 75 ~~~~k~~ei~~l~~~l~~l-------~~~~~k~e~~l~~~~~Y~~fL~ 115 (126)
T PF13863_consen 75 KKEEKEAEIKKLKAELEEL-------KSEISKLEEKLEEYKKYEEFLE 115 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555554 3333333343334444444443
No 297
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=81.76 E-value=52 Score=31.79 Aligned_cols=88 Identities=14% Similarity=0.144 Sum_probs=59.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 116 QLGAKTEEVAREKELTENLFKKIEKL----SLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGR 191 (559)
Q Consensus 116 k~~kl~EEIee~kekleeL~~eIe~L----e~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr 191 (559)
+.......+++.+.++..+...++-+ ..+++.+...++....+++-+..-+...+.++.+..+.+..++++-+.+-
T Consensus 53 kVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv 132 (159)
T PF04949_consen 53 KVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLV 132 (159)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555666666655 66777777777777777777777777778888888888888877777766
Q ss_pred HHHHHHHHHHhh
Q 008630 192 KLQEQLLQQIDF 203 (559)
Q Consensus 192 ~~iq~LeQeLE~ 203 (559)
+.+-.|.++.+.
T Consensus 133 ~~L~eLv~eSE~ 144 (159)
T PF04949_consen 133 TRLMELVSESER 144 (159)
T ss_pred HHHHHHHHHHHH
Confidence 666666655433
No 298
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=81.40 E-value=1.2e+02 Score=35.82 Aligned_cols=128 Identities=9% Similarity=0.091 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHH
Q 008630 182 KKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF---EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLL 258 (559)
Q Consensus 182 q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL---EkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~ 258 (559)
..+..+..++.++..|++++..-..+..-+..-| ..++..---....+..++...+.....++.+....+..+..+.
T Consensus 328 eh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~ 407 (739)
T PF07111_consen 328 EHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVS 407 (739)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555444444444333333 1222211122234566666666555556666666666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccccccc
Q 008630 259 QEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFGLTTDKMTSEHKV 309 (559)
Q Consensus 259 eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~~~~~~~~~~~~~ 309 (559)
+-+..-..-|...--++..-......|.-.+.|-++++...-+=|-.-.-|
T Consensus 408 eav~S~q~~L~s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~Al 458 (739)
T PF07111_consen 408 EAVSSSQQWLESQMAKVEQALARLPSLSNRLSYAVRRVHTIQGLMARKLAL 458 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccchhHHHHHHHHHH
Confidence 555555444444455555555566667777888777777655555544333
No 299
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=81.01 E-value=2.8 Score=44.74 Aligned_cols=86 Identities=10% Similarity=0.205 Sum_probs=1.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 108 KIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEV 187 (559)
Q Consensus 108 erL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEI 187 (559)
++|..|+-....+.+-+......+-.|...|..+...+.+....|..+...+..+..-+..+...+..+...+.....-|
T Consensus 35 eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssI 114 (326)
T PF04582_consen 35 ERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSI 114 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHH
Q 008630 188 EEGRKL 193 (559)
Q Consensus 188 selr~~ 193 (559)
+.++..
T Consensus 115 S~Lqs~ 120 (326)
T PF04582_consen 115 SDLQSS 120 (326)
T ss_dssp ---HHH
T ss_pred HHHHHh
Confidence 333333
No 300
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=81.01 E-value=55 Score=32.30 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=12.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 008630 82 IKKKCDQLEEHEEKTKTLIAELNSHKKIVDEL 113 (559)
Q Consensus 82 L~~~Qk~L~Ele~kI~~le~e~k~leerL~~L 113 (559)
...++..+..+..++..+...+..++..+..+
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 64 KQKRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444333333333333
No 301
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=80.89 E-value=39 Score=31.61 Aligned_cols=55 Identities=13% Similarity=0.222 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 134 LFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVE 188 (559)
Q Consensus 134 L~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIs 188 (559)
|..+|+.+...+++..+-....++++.++++.+.....++..++.-...++.+|.
T Consensus 66 LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 66 LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433344444444444444444444444444444443333
No 302
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=80.73 E-value=1.1e+02 Score=34.94 Aligned_cols=96 Identities=11% Similarity=0.142 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008630 170 EENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEFEKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGW 249 (559)
Q Consensus 170 eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~ELEkE~~el~kkie~l~ek~eeLq~eieelkekL~~ 249 (559)
..++.+|-.++..+..+.......-..|..++..- +.+++.+...+....+.+..|+.+++. ...+
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~a-----------E~ek~~l~eeL~~a~~~i~~LqDEL~T---Tr~N 484 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESA-----------EKEKESLEEELKEANQNISRLQDELET---TRRN 484 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhh
Confidence 44444444444444444444444444444443333 333333334455555555555544433 3345
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 250 GMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLK 286 (559)
Q Consensus 250 ~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LK 286 (559)
++.++.-+.++|... +.+|..-..++..||
T Consensus 485 YE~QLs~MSEHLasm-------NeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 485 YEEQLSMMSEHLASM-------NEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Confidence 566666666666666 888887777777776
No 303
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=80.19 E-value=24 Score=37.56 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 008630 272 KKKRRDVIDAYKRLKSQYNYICAKFGLT 299 (559)
Q Consensus 272 ~rKl~~l~~eyk~LKSqi~~L~~k~~~~ 299 (559)
...++.++.+.+-. +.|..+-||-
T Consensus 153 ~~e~~~Lre~L~~r----deli~khGlV 176 (302)
T PF09738_consen 153 REELDELREQLKQR----DELIEKHGLV 176 (302)
T ss_pred HHHHHHHHHHHHHH----HHHHHHCCee
Confidence 44444455544333 3344788863
No 304
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=79.03 E-value=59 Score=30.74 Aligned_cols=96 Identities=16% Similarity=0.179 Sum_probs=59.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHH
Q 008630 111 DELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVF-------------EENVSRLQ 177 (559)
Q Consensus 111 ~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~l-------------eeEv~eLq 177 (559)
.-++..+.+...||......++.+..++......+..-...|....+.+.+......+. +.++..++
T Consensus 4 e~a~rny~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae~k~~~~~a~~P~~~~~~~wqlkvr~a~ 83 (136)
T PF11570_consen 4 EVAERNYEAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEAEIKQDEFFANNPPHEYGRGWQLKVRRAQ 83 (136)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTT-TTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccCCCccccccHHHHHHHHHH
Confidence 44667777788888888888888888888887777777888888888877733332222 55555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 008630 178 EELTKKTEEVEEGRKLQEQLLQQIDFKSS 206 (559)
Q Consensus 178 ekl~q~ekEIselr~~iq~LeQeLE~~~~ 206 (559)
..+...++++.-..+.+..+...|.....
T Consensus 84 ~dv~nkq~~l~AA~~~l~~~~~el~~~~~ 112 (136)
T PF11570_consen 84 KDVQNKQNKLKAAQKELNAADEELNRIQA 112 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------H
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 66665555555555555555544444433
No 305
>PF14992 TMCO5: TMCO5 family
Probab=78.99 E-value=72 Score=33.70 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 008630 170 EENVSRLQEELTKKTE 185 (559)
Q Consensus 170 eeEv~eLqekl~q~ek 185 (559)
-..+.+||+++..-..
T Consensus 83 ~~~~~elq~k~~e~~~ 98 (280)
T PF14992_consen 83 SKSVQELQRKQDEQET 98 (280)
T ss_pred hhhhhhhhhhhccccC
Confidence 4445555555544333
No 306
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=78.49 E-value=8.8 Score=38.37 Aligned_cols=90 Identities=17% Similarity=0.249 Sum_probs=52.0
Q ss_pred HHHhHHHhHHHHHHHHHHH-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 008630 39 KLESQRCEINELKQELEFK-SKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQL 117 (559)
Q Consensus 39 ~~~sl~~~~~~l~~~~~~k-~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~ 117 (559)
.|..|+..+...++....+ ...-..-.-+.+-|-+|+.+|...|.....-....-.-++.+..++...++++.-|+.-+
T Consensus 104 ELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L 183 (195)
T PF12761_consen 104 ELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDGLESHL 183 (195)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443332 111112255677788888888888877642111122345566677777777777777777
Q ss_pred hhhHHHHHHHH
Q 008630 118 GAKTEEVAREK 128 (559)
Q Consensus 118 ~kl~EEIee~k 128 (559)
.....+|+.++
T Consensus 184 ~~k~~eL~~L~ 194 (195)
T PF12761_consen 184 SSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHhc
Confidence 77777776653
No 307
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=78.04 E-value=9.3 Score=40.78 Aligned_cols=76 Identities=21% Similarity=0.197 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008630 65 KEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEK 140 (559)
Q Consensus 65 ~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~ 140 (559)
+.-|...++.|.=+...+...+..+......+.....++.-++.++..|+..+.....+...++..++....++++
T Consensus 206 ~~~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~r 281 (344)
T PF12777_consen 206 MVKYYEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLER 281 (344)
T ss_dssp HHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 6667777777777777777777777777777777777666666666666666555555555555444444444433
No 308
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=77.82 E-value=86 Score=31.99 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=24.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhH
Q 008630 80 CEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKT 121 (559)
Q Consensus 80 keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~ 121 (559)
+.|.+++..|..+...+-.+....+.++.++..+.....++.
T Consensus 31 Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e 72 (225)
T COG1842 31 QAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLE 72 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666655555554444443
No 309
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=77.52 E-value=27 Score=39.25 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008630 167 EVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKS 205 (559)
Q Consensus 167 e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~ 205 (559)
+.+.+++.++...+..++.++.+++..++.++.++..+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 134 DFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444445555555555555555555555555554443
No 310
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=77.44 E-value=1.7e+02 Score=35.14 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=7.7
Q ss_pred HHHHhHHHhHHHHHHH
Q 008630 38 VKLESQRCEINELKQE 53 (559)
Q Consensus 38 ~~~~sl~~~~~~l~~~ 53 (559)
.||+-+.-=+.||+-.
T Consensus 334 ~KVrt~KYLLgELkaL 349 (861)
T PF15254_consen 334 EKVRTLKYLLGELKAL 349 (861)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444445555533
No 311
>PRK09343 prefoldin subunit beta; Provisional
Probab=77.12 E-value=40 Score=30.91 Aligned_cols=43 Identities=19% Similarity=0.088 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHH
Q 008630 216 EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLL 258 (559)
Q Consensus 216 EkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~ 258 (559)
..-+..+..+++.+..++..|......++.++.+.+..+.++.
T Consensus 70 ~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 70 TKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555544444443
No 312
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=76.96 E-value=1.4e+02 Score=33.95 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=33.8
Q ss_pred HhHhhhhH-HHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 008630 57 KSKEVEGV-KEMQKGLIQLAQSKACEIKKKCD---QLEEHEEKTKTLIAELNSHKKIVDELQRQLG 118 (559)
Q Consensus 57 k~~~v~~~-~el~~~l~~~~~~~~keL~~~Qk---~L~Ele~kI~~le~e~k~leerL~~Leek~~ 118 (559)
+-+.++++ ++|+--+.+..-+-..+-+.++. .+..+...|-..+.+++.|+.+++.|.-..+
T Consensus 296 ~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~ 361 (622)
T COG5185 296 KIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLR 361 (622)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33344433 66666666665554444444443 3455555666666666666666666655443
No 313
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=76.95 E-value=16 Score=30.49 Aligned_cols=56 Identities=23% Similarity=0.176 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 219 KQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDA 281 (559)
Q Consensus 219 ~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~e 281 (559)
+..++.+|+.+-..++.|..+=..+..++.....+...|.++.+.. ..++.++...
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~A-------r~rvEamI~R 57 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQA-------RQKVEAMITR 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHh
Confidence 4567788888888888888888888888888888888888888888 7777777763
No 314
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=76.90 E-value=86 Score=34.68 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=26.1
Q ss_pred hhhhHHHHHhHHHH---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Q 008630 202 DFKSSEITKNKQEF---EKEKQL-LLDKVRGLEEKANELKKNFCEKS 244 (559)
Q Consensus 202 E~~~~Ei~kle~EL---EkE~~e-l~kkie~l~ek~eeLq~eieelk 244 (559)
+..+.||..++++| |..+.+ .-.+..++.+-++..+-++..++
T Consensus 272 elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 272 ELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34566777777777 333332 23455667777777777766664
No 315
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=76.81 E-value=90 Score=31.70 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=7.4
Q ss_pred HHHhHHHhHHHHHHH
Q 008630 39 KLESQRCEINELKQE 53 (559)
Q Consensus 39 ~~~sl~~~~~~l~~~ 53 (559)
||.++...+.-+...
T Consensus 6 KL~~i~e~~~~f~~~ 20 (247)
T PF06705_consen 6 KLASINERFSGFESD 20 (247)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555544433
No 316
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=76.03 E-value=1.5e+02 Score=33.82 Aligned_cols=7 Identities=29% Similarity=0.463 Sum_probs=3.2
Q ss_pred hhhhhhh
Q 008630 420 PFENIRG 426 (559)
Q Consensus 420 ~~~~~~~ 426 (559)
||+.|-+
T Consensus 441 ~le~i~~ 447 (514)
T TIGR03319 441 KLEEIAN 447 (514)
T ss_pred HHHHHHH
Confidence 4444443
No 317
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=75.80 E-value=1.5e+02 Score=33.67 Aligned_cols=61 Identities=13% Similarity=0.223 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008630 184 TEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF--EKEKQLLLDKVRGLEEKANELKKNFCEKS 244 (559)
Q Consensus 184 ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL--EkE~~el~kkie~l~ek~eeLq~eieelk 244 (559)
..++..+....+.|..+++.+..++...+.+- +....-+..-+.=+++.+..+...++.+.
T Consensus 98 ~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~ 160 (475)
T PRK10361 98 DDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSF 160 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33445555555666666666666666655553 33333333334445555555555554443
No 318
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=75.71 E-value=97 Score=34.61 Aligned_cols=68 Identities=13% Similarity=0.197 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 134 LFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQI 201 (559)
Q Consensus 134 L~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeL 201 (559)
|.+.++.++.+-.++-..|.+++.+..++.++-..+-.++..-+++....+.++..+..+++--+.++
T Consensus 195 L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~ql 262 (447)
T KOG2751|consen 195 LLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQL 262 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHH
Confidence 33444444444444445555555555555555555555555555555555555555555544444443
No 319
>PRK10698 phage shock protein PspA; Provisional
Probab=75.68 E-value=95 Score=31.40 Aligned_cols=43 Identities=19% Similarity=0.171 Sum_probs=23.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHH
Q 008630 81 EIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEE 123 (559)
Q Consensus 81 eL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EE 123 (559)
.|.++...+.++...+-...+..+.++.++..++.....+...
T Consensus 32 ~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~k 74 (222)
T PRK10698 32 MIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEK 74 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555556666666666666665554444433
No 320
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=75.65 E-value=9.6 Score=41.34 Aligned_cols=45 Identities=18% Similarity=0.322 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 008630 164 TKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEI 208 (559)
Q Consensus 164 ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei 208 (559)
.+++.+++.+..++..+..++..+......+..+...++.+....
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRS 188 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333333444444444444444444444444444444444443333
No 321
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=75.50 E-value=34 Score=38.47 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=13.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008630 110 VDELQRQLGAKTEEVAREKELTENLFKKIEKL 141 (559)
Q Consensus 110 L~~Leek~~kl~EEIee~kekleeL~~eIe~L 141 (559)
+..|+.++.++..+++.....+..+..++..+
T Consensus 73 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l 104 (525)
T TIGR02231 73 LAELRKQIRELEAELRDLEDRGDALKALAKFL 104 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444333
No 322
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=75.19 E-value=33 Score=38.57 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008630 93 EEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL 141 (559)
Q Consensus 93 e~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L 141 (559)
...++.+...++.++.++..|....+.+..|-++++.+...+..+|..-
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~a 106 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQA 106 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3478889999999999999999999999999999998888888876655
No 323
>PF15294 Leu_zip: Leucine zipper
Probab=75.00 E-value=1.2e+02 Score=32.14 Aligned_cols=146 Identities=16% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 92 HEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL--SLDISHYKQLLADEKKEKKCFLTKFEVF 169 (559)
Q Consensus 92 le~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L--e~eie~~e~eLee~EkEkeel~ek~e~l 169 (559)
+...|..+..+-..+..++..++..-....+|-..+...++.+....-.. ..........+.+++..+..+
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~l------- 202 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAAL------- 202 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHH-------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008630 170 EENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEFEKEKQLLLDKVRGLEEKANELKKNFCEKSSKQG 248 (559)
Q Consensus 170 eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~ELEkE~~el~kkie~l~ek~eeLq~eieelkekL~ 248 (559)
-.+++..+...+.....+...+..-.+++-..+..+..-+.+|++.+.+ -.-...+..-+..-..++..+..++.
T Consensus 203 ---K~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqq-T~ay~NMk~~ltkKn~QiKeLRkrl~ 277 (278)
T PF15294_consen 203 ---KSELEKALQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQ-TAAYRNMKEILTKKNEQIKELRKRLA 277 (278)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCc-cHHHHHhHHHHHhccHHHHHHHHHhc
No 324
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=74.35 E-value=77 Score=30.72 Aligned_cols=76 Identities=16% Similarity=0.240 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 008630 66 EMQKGLIQLAQSKACEIKKKCDQLEEHEEK-------TKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKI 138 (559)
Q Consensus 66 el~~~l~~~~~~~~keL~~~Qk~L~Ele~k-------I~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eI 138 (559)
.|..+|+.+|+..+...-...-...+.... -+.--..+.....++...++.+.+....+...+..+.....++
T Consensus 2 ~ll~~l~~~vkk~a~~~p~~ess~ee~~ve~~~~rve~g~dne~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eel 81 (157)
T COG3352 2 GLLDNLKKLVKKEATEEPQQESSDEEKQVEAIHSRVENGIDNEVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEEL 81 (157)
T ss_pred cchHHHHHHHHHHHHhcchhhhhhhhHhHHHhhcccccCCChHHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHH
Confidence 455666666666555544332222221111 1111223334444455555555544444444444444444444
Q ss_pred HHH
Q 008630 139 EKL 141 (559)
Q Consensus 139 e~L 141 (559)
++|
T Consensus 82 erL 84 (157)
T COG3352 82 ERL 84 (157)
T ss_pred HHH
Confidence 444
No 325
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=73.72 E-value=1.3e+02 Score=32.11 Aligned_cols=6 Identities=33% Similarity=0.312 Sum_probs=2.8
Q ss_pred CCCCCC
Q 008630 320 RNPIPF 325 (559)
Q Consensus 320 ~~~~~~ 325 (559)
|.+||.
T Consensus 220 p~~ip~ 225 (301)
T PF06120_consen 220 PPRIPK 225 (301)
T ss_pred CCCCCC
Confidence 444554
No 326
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=72.88 E-value=1.6e+02 Score=32.60 Aligned_cols=31 Identities=10% Similarity=0.199 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCcc
Q 008630 272 KKKRRDVIDAYKRLKSQYNYICAKFGLTTDK 302 (559)
Q Consensus 272 ~rKl~~l~~eyk~LKSqi~~L~~k~~~~~~~ 302 (559)
.|.+...+.-|..+=..+..+....+.+..|
T Consensus 379 ~Re~~~~r~~ye~lL~r~qe~~~~~~~~~~n 409 (458)
T COG3206 379 EREAEAARSLYETLLQRYQELSIQEASPIGN 409 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc
Confidence 6666666665555555555555554544444
No 327
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=72.83 E-value=1.3e+02 Score=31.84 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008630 152 LADEKKEKKCFLTKFEVFEENVS 174 (559)
Q Consensus 152 Lee~EkEkeel~ek~e~leeEv~ 174 (559)
|.++.+|+++|+..++.++..+.
T Consensus 119 LKEARkEIkQLkQvieTmrssL~ 141 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRSSLA 141 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 33444444444444444433333
No 328
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=72.73 E-value=1.2e+02 Score=31.28 Aligned_cols=92 Identities=10% Similarity=0.184 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 173 VSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF----------EKEKQLLLDKVRGLEEKANELKKNFCE 242 (559)
Q Consensus 173 v~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL----------EkE~~el~kkie~l~ek~eeLq~eiee 242 (559)
+..--.+...++.+.......+...-..+...+..+..++..+ =..+......++.+..++..|+..+..
T Consensus 123 Ln~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~ 202 (239)
T PF05276_consen 123 LNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQ 202 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555555555556666566666666666666554 123344555566666777777777777
Q ss_pred HhhhhhcchhhhHHHHHHHHHH
Q 008630 243 KSSKQGWGMDSNDKLLQEIEQK 264 (559)
Q Consensus 243 lkekL~~~e~eieeL~eqL~~k 264 (559)
.+..+......++.+-++|...
T Consensus 203 aK~~Y~~ALrnLE~ISeeIH~~ 224 (239)
T PF05276_consen 203 AKSRYSEALRNLEQISEEIHEQ 224 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666677666666665
No 329
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=72.65 E-value=1.3e+02 Score=31.65 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 149 KQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKK 183 (559)
Q Consensus 149 e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ 183 (559)
..+|...++++.++..++...+.++.+|..+...+
T Consensus 213 ~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l 247 (269)
T PF05278_consen 213 EEELKQKEKEVKEIKERITEMKGRLGELEMESTRL 247 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 330
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=72.60 E-value=56 Score=27.63 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=6.5
Q ss_pred HHHHHHhHhhhhHHH
Q 008630 52 QELEFKSKEVEGVKE 66 (559)
Q Consensus 52 ~~~~~k~~~v~~~~e 66 (559)
..|++|-+.|...|+
T Consensus 5 ~~l~EKDe~Ia~L~e 19 (74)
T PF12329_consen 5 KKLAEKDEQIAQLME 19 (74)
T ss_pred HHHHhHHHHHHHHHH
Confidence 344444444444433
No 331
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=71.91 E-value=1.8e+02 Score=32.97 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=13.1
Q ss_pred HHHHHHhhhCCCCc-ccccccccccc
Q 008630 288 QYNYICAKFGLTTD-KMTSEHKVEEE 312 (559)
Q Consensus 288 qi~~L~~k~~~~~~-~~~~~~~~~~~ 312 (559)
++..+...+|+.++ ..-.+.++-++
T Consensus 209 qLerILE~sGL~~~~~y~~Q~~~~~~ 234 (475)
T PRK10361 209 VLTRVLEASGLREGYEYETQVSIEND 234 (475)
T ss_pred HHHHHHHHhCCCcCCcceeeeeccCC
Confidence 34445556788776 33344444443
No 332
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=71.80 E-value=68 Score=29.11 Aligned_cols=58 Identities=14% Similarity=0.123 Sum_probs=26.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 008630 80 CEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKK 137 (559)
Q Consensus 80 keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~e 137 (559)
.......+.+.+-..+-..+...++..+..|+.+++....+...-.++..+...|..+
T Consensus 12 aQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~E 69 (102)
T PF10205_consen 12 AQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEE 69 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555555555555555544444444444433333333333
No 333
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=70.79 E-value=1.9e+02 Score=32.70 Aligned_cols=19 Identities=11% Similarity=0.116 Sum_probs=11.8
Q ss_pred cccccccCCCCCC-CCCCCC
Q 008630 312 ESDSLTHRRNPIP-FPDKHS 330 (559)
Q Consensus 312 ~~~~~~~~~~~~~-~~~~~~ 330 (559)
-+.+.+||.+-+| |-|.+.
T Consensus 480 ~n~~~~~~~~v~~l~~d~~~ 499 (554)
T KOG4677|consen 480 LNTKFKCHDVVIDLYRDLKD 499 (554)
T ss_pred cCCCcccccccchHhhhhhh
Confidence 4567788876666 555544
No 334
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=70.65 E-value=1.2e+02 Score=30.23 Aligned_cols=71 Identities=25% Similarity=0.318 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 76 QSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDIS 146 (559)
Q Consensus 76 ~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie 146 (559)
..+...+.........++..|..++.++-.++.....+..+......+|.+++.-.+.+..++...+-.+.
T Consensus 113 k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 113 KKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555666666666666666666666666666666666666666666666666544443
No 335
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=70.45 E-value=51 Score=28.98 Aligned_cols=67 Identities=19% Similarity=0.270 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcchh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008630 224 DKVRGLEEKANELKKNFCEKSSKQGWGMD---SNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFG 297 (559)
Q Consensus 224 kkie~l~ek~eeLq~eieelkekL~~~e~---eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~ 297 (559)
.....+...++.|+++.+.+..+|..... ..+.+..+.... +.++.++..+...+...+..++-.++
T Consensus 36 ~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~l-------k~~i~~le~~~~~~e~~l~~~l~~iP 105 (108)
T PF02403_consen 36 QERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKEL-------KEEIKELEEQLKELEEELNELLLSIP 105 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33444555555555555555555555554 567777777777 77777777777788888877776554
No 336
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=70.15 E-value=1.8e+02 Score=32.17 Aligned_cols=63 Identities=17% Similarity=0.154 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 216 EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDA 281 (559)
Q Consensus 216 EkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~e 281 (559)
+++..-+...-..+++.+.+.......+.+.+..+ ++.++.-.+-.-||||.-.+++.++.-.
T Consensus 215 e~~~~~~a~N~~~~ks~i~ei~~sl~~l~d~lk~~---~q~~~~~~enr~~e~m~l~k~~nslkp~ 277 (464)
T KOG4637|consen 215 EKEIGRIANNYDKLKSRIREIHDSLTRLEDDLKAL---IQALRSNSENRLCELMELDKAMNSLKPD 277 (464)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHH---HHHHhhhhhhhhHHHHHHHHHHhhcCch
Confidence 44444444443334443333333333333222222 3444444466678888888888887764
No 337
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=70.02 E-value=34 Score=30.59 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 161 CFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQ 200 (559)
Q Consensus 161 el~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQe 200 (559)
++...++.++.++..++..+..+...+.+....++.+..-
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l 42 (129)
T cd00890 3 ELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETL 42 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666777777777777777776666665555543
No 338
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=69.96 E-value=30 Score=39.99 Aligned_cols=97 Identities=24% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 008630 38 VKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIK--KKCDQLEEHEEKTKTLIAELNSHKKIVDELQR 115 (559)
Q Consensus 38 ~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~--~~Qk~L~Ele~kI~~le~e~k~leerL~~Lee 115 (559)
.+|..|+.+|+.|+.+...+.++| ..+...++.+...++-... .....+..+. .......+-...|..|..
T Consensus 142 ~~l~~l~~~l~~L~~e~~~R~~~v---~~l~~~I~~l~~~L~~~~~~~~~e~~l~~~~----~~~~~~~Ls~~~l~~L~~ 214 (619)
T PF03999_consen 142 EELEELRQHLQRLQEEKERRLEEV---RELREEIISLMEELGIDPERTSFEKDLLSYS----EDEESFCLSDENLEKLQE 214 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCCcccccchhhccccc----cccccCCCCHHHHHHHHH
Confidence 577788888888886665555555 4444555555555554443 1111111111 223334445566666666
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008630 116 QLGAKTEEVAREKELTENLFKKIEKL 141 (559)
Q Consensus 116 k~~kl~EEIee~kekleeL~~eIe~L 141 (559)
....+.++...-...++.+...|..|
T Consensus 215 ~~~~L~~~k~~r~~~~~~l~~~i~~L 240 (619)
T PF03999_consen 215 LLQELEEEKEEREEKLQELREKIEEL 240 (619)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666665
No 339
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=69.72 E-value=1.2e+02 Score=30.05 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=12.9
Q ss_pred HHHHHHhHHHhHHHHH
Q 008630 36 LLVKLESQRCEINELK 51 (559)
Q Consensus 36 ~~~~~~sl~~~~~~l~ 51 (559)
|++-|++|+.+|-.|+
T Consensus 2 visALK~LQeKIrrLE 17 (178)
T PF14073_consen 2 VISALKNLQEKIRRLE 17 (178)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567899999998877
No 340
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=69.13 E-value=61 Score=30.92 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHH
Q 008630 89 LEEHEEKTKTLIAELNSHKKIVD 111 (559)
Q Consensus 89 L~Ele~kI~~le~e~k~leerL~ 111 (559)
+.++..++..+..+.+.+..++.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 341
>PRK00295 hypothetical protein; Provisional
Probab=69.11 E-value=32 Score=28.65 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=31.7
Q ss_pred HHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 237 KKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYIC 293 (559)
Q Consensus 237 q~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~ 293 (559)
.+.+..|+.++...+.-|+.|-..+... .+.++.+...+..|..++..+-
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Q-------q~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQ-------QRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566666666666667777777776 6666666666666666665543
No 342
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=68.52 E-value=36 Score=39.19 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 108 KIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQ 150 (559)
Q Consensus 108 erL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~ 150 (559)
.++.+|+.+..++..+|++...+++++...|..-+.++..++.
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~ 135 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKG 135 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 3444455555555555555554444444444433333333333
No 343
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=68.36 E-value=3e+02 Score=34.12 Aligned_cols=112 Identities=21% Similarity=0.255 Sum_probs=56.2
Q ss_pred HHhhhHHHHHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 008630 30 EEKTGQLLVKLESQRCEINELKQELEFKSKEVEGVKEMQK-------GLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAE 102 (559)
Q Consensus 30 e~~~~~~~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~-------~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e 102 (559)
+++-.+...+++.....|++|+.++.-.-+.+.+-.+++. .|....+..-..|......|..+...+......
T Consensus 433 ee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 433 EERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555556666555555555555555554 344444444444444444444444444444444
Q ss_pred Hh-------hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008630 103 LN-------SHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL 141 (559)
Q Consensus 103 ~k-------~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L 141 (559)
++ ..+.....+.+....+...++....-+..|...|++.
T Consensus 513 l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~ 558 (1041)
T KOG0243|consen 513 LKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRK 558 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33 3333333333334444445555555555666666666
No 344
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=68.31 E-value=1.5e+02 Score=30.54 Aligned_cols=174 Identities=15% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHhHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHhHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHhh
Q 008630 50 LKQELEFKSKEVEGVKEMQKGLIQLAQS---------KACEIKKKCDQLEEHEEKTKTLIAELNSHKK-IVDELQRQLGA 119 (559)
Q Consensus 50 l~~~~~~k~~~v~~~~el~~~l~~~~~~---------~~keL~~~Qk~L~Ele~kI~~le~e~k~lee-rL~~Leek~~k 119 (559)
||+++..-.|.|.+|-+..+.++.++++ ....|..-=+.|..+-..|+.+.+.-.+..+ .|...-.....
T Consensus 6 LQ~Eid~~lKkv~EG~~~F~~i~~K~~~~~n~~QKEK~E~DLKkEIKKLQR~RdQIK~W~~~~diKdk~~L~e~Rk~IE~ 85 (233)
T PF04065_consen 6 LQQEIDRTLKKVQEGVEEFDEIYEKVESATNQNQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIKDKKKLLENRKLIEE 85 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 120 KTEEVAREKELTENLFKKIEKL--------------------SLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEE 179 (559)
Q Consensus 120 l~EEIee~kekleeL~~eIe~L--------------------e~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqek 179 (559)
.++.---.+....-=..+.+.| ...+..+..+++.++.+++.+-...... ..-...+..
T Consensus 86 ~MErFK~vEkesKtKafSkeGL~~~~k~dp~e~ek~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKk-k~~~~~~~r 164 (233)
T PF04065_consen 86 QMERFKVVEKESKTKAFSKEGLMAASKLDPKEKEKEEARDWLKDSIDELNRQIEQLEAEIESLSSQKKKK-KKDSTKQER 164 (233)
T ss_pred HHHHHHHHHHHhcccccchhhhhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ccCccchhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 180 LTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEFEKEKQLLLDKVRGLEEKANELKKNFCEK 243 (559)
Q Consensus 180 l~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~ELEkE~~el~kkie~l~ek~eeLq~eieel 243 (559)
+..+..-|...+-=+.+|+.-+.++.++...-. .+..++..++..
T Consensus 165 ~~~l~~~ierhk~Hi~kLE~lLR~L~N~~l~~e-------------------~V~~ikedieyY 209 (233)
T PF04065_consen 165 IEELESRIERHKFHIEKLELLLRLLDNDELDPE-------------------QVEDIKEDIEYY 209 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH-------------------HHHHHHHHHHHH
No 345
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=67.28 E-value=1.4e+02 Score=29.95 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 220 QLLLDKVRGLEEKANELKKNFCEK 243 (559)
Q Consensus 220 ~el~kkie~l~ek~eeLq~eieel 243 (559)
..+.++.-+++..+..|..++..+
T Consensus 185 ~~~v~kn~eie~a~~~Le~ei~~l 208 (221)
T PF05700_consen 185 KELVSKNLEIEVACEELEQEIEQL 208 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 346
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=66.96 E-value=2.9e+02 Score=33.30 Aligned_cols=142 Identities=19% Similarity=0.194 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH-HHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 008630 170 EENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF-EKEKQLLL------DKVRGLEEKANELKKNFCE 242 (559)
Q Consensus 170 eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL-EkE~~el~------kkie~l~ek~eeLq~eiee 242 (559)
+.-...||.++.+..+.++.++...+.|.+.++....+-.++...+ +++.+-++ -....+.-++++.-.....
T Consensus 433 qSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~ 512 (861)
T PF15254_consen 433 QSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKS 512 (861)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666777776666666666666666666666655555555444 33333332 3334566677777777777
Q ss_pred HhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-------Cccccccccccccccc
Q 008630 243 KSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFGLT-------TDKMTSEHKVEEESDS 315 (559)
Q Consensus 243 lkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~~~-------~~~~~~~~~~~~~~~~ 315 (559)
++-+++.-+.+-.-|.--|.+.|. |..+|+++.. -|++=+..+.. +|+ ++|.|+-+=|+.+-.-
T Consensus 513 ~q~kLe~sekEN~iL~itlrQrDa----Ei~RL~eLtR---~LQ~Sma~lL~--dls~D~ar~Kp~~nLTKSLLniyEkq 583 (861)
T PF15254_consen 513 LQFKLEASEKENQILGITLRQRDA----EIERLRELTR---TLQNSMAKLLS--DLSVDSARCKPGNNLTKSLLNIYEKQ 583 (861)
T ss_pred HhhhHHHHHhhhhHhhhHHHHHHH----HHHHHHHHHH---HHHHHHHHHhh--hccccccccCCcchhHHHHHHHHHHh
Confidence 777887777777777766666633 3455555544 34333333332 233 3445555555555544
Q ss_pred cccCC
Q 008630 316 LTHRR 320 (559)
Q Consensus 316 ~~~~~ 320 (559)
+-|-|
T Consensus 584 lQ~dp 588 (861)
T PF15254_consen 584 LQHDP 588 (861)
T ss_pred hcCCC
Confidence 44434
No 347
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=66.46 E-value=1.8e+02 Score=30.67 Aligned_cols=6 Identities=50% Similarity=0.877 Sum_probs=2.6
Q ss_pred hHHHHH
Q 008630 46 EINELK 51 (559)
Q Consensus 46 ~~~~l~ 51 (559)
++..|+
T Consensus 115 k~~dlk 120 (267)
T PF10234_consen 115 KIQDLK 120 (267)
T ss_pred hhhhHH
Confidence 344444
No 348
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=66.06 E-value=31 Score=28.59 Aligned_cols=47 Identities=15% Similarity=0.278 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008630 95 KTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL 141 (559)
Q Consensus 95 kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L 141 (559)
+|..++.++-+.+.-+..|.+-..+...+|..++..+..|..++..+
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444444444444444444444444444444333
No 349
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=66.00 E-value=9.5 Score=34.24 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008630 124 VAREKELTENLFKKIEKLSLDISHYKQLL-ADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQID 202 (559)
Q Consensus 124 Iee~kekleeL~~eIe~Le~eie~~e~eL-ee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE 202 (559)
+.....+...+....+.+..+++++...| +++.+.|...+-....++..+..|..++-.....|..+..++..|+..+.
T Consensus 3 l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~ 82 (100)
T PF06428_consen 3 LEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVME 82 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556666666666666666666 66666665555555555666666666666666666666666666655554
Q ss_pred hh
Q 008630 203 FK 204 (559)
Q Consensus 203 ~~ 204 (559)
..
T Consensus 83 ~~ 84 (100)
T PF06428_consen 83 SM 84 (100)
T ss_dssp T-
T ss_pred Hc
Confidence 43
No 350
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=65.17 E-value=1.5e+02 Score=35.26 Aligned_cols=74 Identities=19% Similarity=0.169 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008630 63 GVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL 141 (559)
Q Consensus 63 ~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L 141 (559)
.-++....|.++++.+.+.+...+..+......+....- ++.+..++.....+.+++...++.+..+..+++.+
T Consensus 487 ~~~~~~~~l~~llee~~~~~~~~~~~~l~~~~~~k~~~~-----~q~~~~~~~~~~~~~~~l~~kke~i~q~re~~~~~ 560 (809)
T KOG0247|consen 487 QDKNDKETLDQLLEELEKRILLRTKEILQNNKSLKEKEC-----RQKLMNAQLESQMLSSQLNDKKEQIEQLRDEIERL 560 (809)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHH-----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 346667778888887777777766644444443333222 22222222222445555555555555555555555
No 351
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=64.76 E-value=91 Score=26.77 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 008630 148 YKQLLADEKKEKKCF 162 (559)
Q Consensus 148 ~e~eLee~EkEkeel 162 (559)
++..++.++.+++.+
T Consensus 67 L~~~~~~~~~~i~~l 81 (106)
T PF01920_consen 67 LEERIEKLEKEIKKL 81 (106)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 352
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=64.49 E-value=2.7e+02 Score=32.03 Aligned_cols=76 Identities=14% Similarity=0.239 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 168 VFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEFEKEKQLLLDKVRGLEEKANELKKNFCEK 243 (559)
Q Consensus 168 ~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~ELEkE~~el~kkie~l~ek~eeLq~eieel 243 (559)
.+..+...|..++...+++...+...+....+.+.+++.++.--+...|..+..+..++..+++++.....+|+.+
T Consensus 438 ~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 438 HFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666666666655555555555555555555555444444443335555555555555555555555544444
No 353
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=64.30 E-value=1.8e+02 Score=30.12 Aligned_cols=34 Identities=9% Similarity=0.051 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008630 61 VEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEE 94 (559)
Q Consensus 61 v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~ 94 (559)
+..|.....-|...+..-+..-..+-+.|..+-.
T Consensus 21 ~k~g~~~~kel~~f~keRa~iEe~Yak~L~kLak 54 (269)
T cd07673 21 MKHGQISTKELSDFIRERATIEEAYSRSMTKLAK 54 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555555555555555555554443
No 354
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=64.10 E-value=1.3e+02 Score=28.24 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008630 150 QLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQID 202 (559)
Q Consensus 150 ~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE 202 (559)
..|+.+-..+++..+..+..++++..++..+.++..++.........|...|.
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444555555555555555555555444444444433
No 355
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=63.91 E-value=2.8e+02 Score=32.14 Aligned_cols=43 Identities=19% Similarity=0.147 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 008630 74 LAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQ 116 (559)
Q Consensus 74 ~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek 116 (559)
.++..-+.+....++|..+..+.+....++.+|+=++.+|+.-
T Consensus 158 ~~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~ 200 (557)
T COG0497 158 AYQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEEL 200 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3555556666667777777777777777777777777776654
No 356
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=63.77 E-value=2.3e+02 Score=31.03 Aligned_cols=85 Identities=7% Similarity=0.176 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhhhHHHHHhHHHH-HHHHHH
Q 008630 149 KQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLL------QQIDFKSSEITKNKQEF-EKEKQL 221 (559)
Q Consensus 149 e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~Le------QeLE~~~~Ei~kle~EL-EkE~~e 221 (559)
...|+++...+.++..++...+.....-+.-+..++.+|..++...-+|- ++|.++..-...++.=+ ...+.+
T Consensus 56 ~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e 135 (383)
T PF04100_consen 56 EEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKE 135 (383)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 34566666677777777777777777777888888888888888887764 44555555555555433 444544
Q ss_pred HHHHHHHHHHHH
Q 008630 222 LLDKVRGLEEKA 233 (559)
Q Consensus 222 l~kkie~l~ek~ 233 (559)
+-.-+..+.+-.
T Consensus 136 ~a~~L~av~~L~ 147 (383)
T PF04100_consen 136 IASLLQAVKELL 147 (383)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 357
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=63.69 E-value=37 Score=28.16 Aligned_cols=22 Identities=5% Similarity=0.018 Sum_probs=8.3
Q ss_pred HhhHHHHHHHHHHHHhhhHHHH
Q 008630 103 LNSHKKIVDELQRQLGAKTEEV 124 (559)
Q Consensus 103 ~k~leerL~~Leek~~kl~EEI 124 (559)
+.-|+.++.|+++-...+.+-+
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v 27 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVV 27 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 358
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=63.61 E-value=1.7e+02 Score=29.41 Aligned_cols=36 Identities=6% Similarity=0.022 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008630 253 SNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAK 295 (559)
Q Consensus 253 eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k 295 (559)
+++++...+... ...+....+.|..+-..++.+..+
T Consensus 151 e~eK~~~k~~k~-------~~~~~~~~~~Y~~~v~~~~~~~~~ 186 (236)
T cd07651 151 ELEKNNAKLNKA-------QSSINSSRRDYQNAVKALRELNEI 186 (236)
T ss_pred hHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555 333444444554444444444333
No 359
>PRK04325 hypothetical protein; Provisional
Probab=63.26 E-value=46 Score=28.16 Aligned_cols=16 Identities=0% Similarity=0.009 Sum_probs=8.0
Q ss_pred HHHHHHhHHHhHHHHH
Q 008630 36 LLVKLESQRCEINELK 51 (559)
Q Consensus 36 ~~~~~~sl~~~~~~l~ 51 (559)
|..|+..||.++.+++
T Consensus 7 ~e~Ri~~LE~klAfQE 22 (74)
T PRK04325 7 MEDRITELEIQLAFQE 22 (74)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555544
No 360
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=63.17 E-value=2.9e+02 Score=32.09 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhhhCCCCcc
Q 008630 284 RLKSQYNYICAKFGLTTDK 302 (559)
Q Consensus 284 ~LKSqi~~L~~k~~~~~~~ 302 (559)
.|-+++...-.++|-...+
T Consensus 539 ~l~~~~~~~~~~~~~~~~~ 557 (607)
T KOG0240|consen 539 ELRKDLGEIGWKIGTSSEK 557 (607)
T ss_pred HHHhhhccccccccCCccc
Confidence 4555555555555544433
No 361
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=63.17 E-value=2.6e+02 Score=31.43 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=9.1
Q ss_pred HHHHhhhCCCCcc
Q 008630 290 NYICAKFGLTTDK 302 (559)
Q Consensus 290 ~~L~~k~~~~~~~ 302 (559)
.-||+|+|++-..
T Consensus 316 ~~l~~kig~~~~~ 328 (447)
T KOG2751|consen 316 HTLANKIGLNFVR 328 (447)
T ss_pred HHHHHhcCcccce
Confidence 4578899976543
No 362
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=62.99 E-value=74 Score=31.69 Aligned_cols=27 Identities=19% Similarity=0.428 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCcc
Q 008630 276 RDVIDAYKRLKSQYNYICAKFGLTTDK 302 (559)
Q Consensus 276 ~~l~~eyk~LKSqi~~L~~k~~~~~~~ 302 (559)
.++..-..-..=.++|+|+|||+.++-
T Consensus 166 ~~~n~~tDnI~ilidy~c~kf~~~~~q 192 (209)
T COG5124 166 VHLNKTTDNIEILIDYLCKKFFLKPEQ 192 (209)
T ss_pred HHHHhhhhhHHHHHHHHHHHcCCCHHH
Confidence 333333344455789999999987665
No 363
>PRK02793 phi X174 lysis protein; Provisional
Probab=62.85 E-value=48 Score=27.89 Aligned_cols=16 Identities=13% Similarity=0.121 Sum_probs=9.8
Q ss_pred HHHHHHhHHHhHHHHH
Q 008630 36 LLVKLESQRCEINELK 51 (559)
Q Consensus 36 ~~~~~~sl~~~~~~l~ 51 (559)
+..|+..||.+|.++.
T Consensus 6 ~e~Ri~~LE~~lafQe 21 (72)
T PRK02793 6 LEARLAELESRLAFQE 21 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666666666655
No 364
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=62.76 E-value=1.3e+02 Score=27.96 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 157 KEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQL 197 (559)
Q Consensus 157 kEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~L 197 (559)
+.++++..+.+.++-++..|+++...+..++..++..+...
T Consensus 70 ~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 70 EAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555555555555555444
No 365
>PRK04406 hypothetical protein; Provisional
Probab=62.76 E-value=62 Score=27.55 Aligned_cols=45 Identities=16% Similarity=0.273 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 008630 92 HEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFK 136 (559)
Q Consensus 92 le~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~ 136 (559)
++.+|..++..+-+.+.-|..|.+-..+...+|..++.++..|..
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444433333333
No 366
>PF15456 Uds1: Up-regulated During Septation
Probab=62.69 E-value=1.3e+02 Score=27.95 Aligned_cols=59 Identities=10% Similarity=0.155 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 127 EKELTENLFKKIEKL-----------SLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTE 185 (559)
Q Consensus 127 ~kekleeL~~eIe~L-----------e~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ek 185 (559)
+..++..+..++-.+ ...+......|+.....++++-.++..++.+..++++.+++...
T Consensus 47 le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~le~R~~~~~~rLLeH~A 116 (124)
T PF15456_consen 47 LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKLENRLAEVRQRLLEHTA 116 (124)
T ss_pred HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555 13456666777777777777777777778888888888877654
No 367
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=62.43 E-value=1.7e+02 Score=29.10 Aligned_cols=57 Identities=18% Similarity=0.193 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHhhhHHHHHHHHHHH
Q 008630 75 AQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVD--ELQRQLGAKTEEVAREKELT 131 (559)
Q Consensus 75 ~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~--~Leek~~kl~EEIee~kekl 131 (559)
++.+.-.|..++..+.++...++-.+++++.|...|. ++++...++..++..-.+++
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl 139 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERL 139 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666666665542 33433333333333333333
No 368
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=62.34 E-value=1.8e+02 Score=29.28 Aligned_cols=57 Identities=19% Similarity=0.159 Sum_probs=40.5
Q ss_pred HhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCcccccc
Q 008630 243 KSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFGLTTDKMTSE 306 (559)
Q Consensus 243 lkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~~~~~~~~~~ 306 (559)
....-.+.......+.+.|... -..+..-..+++..++.+...|..+||+..+.+.-
T Consensus 135 ~~~~wlnks~s~kk~~eei~~~-------i~~~~~~~~~~~~~~~~i~~~A~~~~l~~~~yi~~ 191 (215)
T PF07083_consen 135 IKPKWLNKSYSLKKIEEEIDDQ-------IDKIKQDLEEIKAAKQAIEEKAEEYGLPADPYIRM 191 (215)
T ss_pred cchHHhhcCCcHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 3344444445555566666666 55556666788889999999999999999987744
No 369
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=62.28 E-value=2.6e+02 Score=31.11 Aligned_cols=42 Identities=19% Similarity=0.342 Sum_probs=26.5
Q ss_pred hhhhHHHHHhHHHH---HHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 008630 202 DFKSSEITKNKQEF---EKEKQLLL-DKVRGLEEKANELKKNFCEK 243 (559)
Q Consensus 202 E~~~~Ei~kle~EL---EkE~~el~-kkie~l~ek~eeLq~eieel 243 (559)
+.-+.+|..+++|| +..+.+.. .+-.++++-++.++-++..+
T Consensus 320 eLqQnEi~nLKqElasmeervaYQsyERaRdIqEalEscqtrisKl 365 (455)
T KOG3850|consen 320 ELQQNEIANLKQELASMEERVAYQSYERARDIQEALESCQTRISKL 365 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557788888887 43333322 34466777777777777666
No 370
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=62.11 E-value=1.4e+02 Score=29.17 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=33.4
Q ss_pred HHHhHHHhHHHHHHHHHHHhHhhhhHHH-----HHHHHHHHHHHHHHHHHHHH
Q 008630 39 KLESQRCEINELKQELEFKSKEVEGVKE-----MQKGLIQLAQSKACEIKKKC 86 (559)
Q Consensus 39 ~~~sl~~~~~~l~~~~~~k~~~v~~~~e-----l~~~l~~~~~~~~keL~~~Q 86 (559)
+=..|..+|.|+++-+..-...+..+.. |..+|+.-++-+..++....
T Consensus 38 ~~~~L~~yl~Ei~~~l~~L~~~~~~~~~~~~~~laEkL~~Q~~AL~r~l~t~~ 90 (173)
T PF07445_consen 38 RSQRLSDYLQEIEQTLAQLQQQVEQNRLQQVAFLAEKLVAQIEALQRELATQS 90 (173)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456677888888887777777777655 67777777666666665543
No 371
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=62.02 E-value=3e+02 Score=31.88 Aligned_cols=44 Identities=11% Similarity=-0.013 Sum_probs=19.3
Q ss_pred hhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhC
Q 008630 247 QGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDA-YKRLKSQYNYICAKFG 297 (559)
Q Consensus 247 L~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~e-yk~LKSqi~~L~~k~~ 297 (559)
+..++.++..+.+++... -..|+..+.. -+.|...+..-.+-++
T Consensus 344 ~~~Le~~~~~l~~~~~~~-------A~~Ls~~R~~~A~~L~~~v~~eL~~L~ 388 (557)
T COG0497 344 LEALEKEVKKLKAELLEA-------AEALSAIRKKAAKELEKEVTAELKALA 388 (557)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334444444444444444 5555544442 2334444444444333
No 372
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=61.78 E-value=3.1e+02 Score=31.86 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=24.1
Q ss_pred HHHHHHHHHhHhhhhHHHHHHHHHHHHHHHH
Q 008630 49 ELKQELEFKSKEVEGVKEMQKGLIQLAQSKA 79 (559)
Q Consensus 49 ~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~ 79 (559)
.||+++-.=.|+|.+|-|+-+-.+++++.-.
T Consensus 5 KLq~eIdr~lkKv~Egve~Fd~i~ek~~~~~ 35 (575)
T KOG2150|consen 5 KLQQEIDRCLKKVDEGVEIFDEIYEKLHSAN 35 (575)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 4566666667999999999999998876544
No 373
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=61.72 E-value=1.3e+02 Score=27.40 Aligned_cols=69 Identities=19% Similarity=0.084 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 77 SKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDI 145 (559)
Q Consensus 77 ~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~ei 145 (559)
.++.+|+....+..-+....-.-.++-..|.+.|..-+..++++..|++.+.=+-..|..+++.|..++
T Consensus 2 kla~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El 70 (102)
T PF10205_consen 2 KLAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEEL 70 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666666666666666666666666666555555555555553333
No 374
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=61.36 E-value=2.3e+02 Score=31.92 Aligned_cols=86 Identities=17% Similarity=0.169 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 66 EMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDI 145 (559)
Q Consensus 66 el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~ei 145 (559)
+-|-+|+|.|----++|...+.+-.=-+..-. .....+.+++..++..++.|..++-=|..-|
T Consensus 440 daqG~LVqkIlETkke~e~~g~~~~p~e~~a~-----------------~~~sa~~~~~~~lr~~~Q~LtkSa~PLgkl~ 502 (583)
T KOG3809|consen 440 DAQGALVQKILETKKEIEDGGGQDQPEESDAD-----------------KIMSAEREKMKQLREKLQDLTKSAYPLGKLF 502 (583)
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCCCCChhhhh-----------------hHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 34567888776666666665553221111111 1111222366667777777777766666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008630 146 SHYKQLLADEKKEKKCFLTKFEV 168 (559)
Q Consensus 146 e~~e~eLee~EkEkeel~ek~e~ 168 (559)
.=+...++....+++.++.....
T Consensus 503 D~i~eD~daMq~EL~mWrse~rq 525 (583)
T KOG3809|consen 503 DFINEDIDAMQKELEMWRSEQRQ 525 (583)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Confidence 66666777777777777655433
No 375
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=61.23 E-value=2.5e+02 Score=30.70 Aligned_cols=76 Identities=18% Similarity=0.308 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008630 66 EMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL 141 (559)
Q Consensus 66 el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L 141 (559)
.|...+...|...+..-.+....|.+....|..+..++.....+....+.-...++..|-.+-.--.+|..+|.-|
T Consensus 36 ~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT~L 111 (383)
T PF04100_consen 36 ELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQLDNAKRNLTQSITTL 111 (383)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555544455566677777888888888888888888888888888888877777777777766666
No 376
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=61.17 E-value=71 Score=28.98 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 150 QLLADEKKEKKCFLTKFEVFEENVSRLQEELTK 182 (559)
Q Consensus 150 ~eLee~EkEkeel~ek~e~leeEv~eLqekl~q 182 (559)
.++..+++.+..+.++-..++-+...|.+.+.+
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333444443333
No 377
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=61.14 E-value=1.4e+02 Score=27.68 Aligned_cols=82 Identities=20% Similarity=0.270 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 008630 88 QLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL----SLDISHYKQLLADEKKEKKCFL 163 (559)
Q Consensus 88 ~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L----e~eie~~e~eLee~EkEkeel~ 163 (559)
...++...-..+.+++..++.-+..+=.-...+...++.-+-++=++.+.+... ......+...|.+...++++++
T Consensus 21 ~t~~Lk~ec~~F~~ki~~F~~iv~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq~~I~Ek~~eLERl~ 100 (120)
T PF14931_consen 21 QTQELKEECKEFVEKISEFQKIVKGFIEILDELAKRVENEKLKAIGARNLLKSEAKQREAQQQQLQALIAEKKMELERLR 100 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666667777777777777777777777776666666666555 3333344444445555555555
Q ss_pred HHHHHH
Q 008630 164 TKFEVF 169 (559)
Q Consensus 164 ek~e~l 169 (559)
.+++.+
T Consensus 101 ~E~~sL 106 (120)
T PF14931_consen 101 SEYESL 106 (120)
T ss_pred HHHHHH
Confidence 554444
No 378
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=61.10 E-value=3e+02 Score=31.46 Aligned_cols=9 Identities=22% Similarity=0.390 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 008630 158 EKKCFLTKF 166 (559)
Q Consensus 158 Ekeel~ek~ 166 (559)
+++.++.++
T Consensus 149 ak~~l~~~~ 157 (514)
T TIGR03319 149 AKEILLEEV 157 (514)
T ss_pred HHHHHHHHH
Confidence 333333333
No 379
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=60.99 E-value=2.4e+02 Score=30.34 Aligned_cols=110 Identities=10% Similarity=0.085 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 90 EEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVF 169 (559)
Q Consensus 90 ~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~l 169 (559)
+++...+..+.+.-+++++++..|=++.++++.+++.++.+.+.+..-..+-+..+.+...+++-++++.++....-..
T Consensus 255 ~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msD- 333 (384)
T KOG0972|consen 255 KEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSD- 333 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-
Confidence 3455555666677788888888888888888888888888887776655555555555555444444443333222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 170 EENVSRLQEELTKKTEEVEEGRKLQEQLLQQ 200 (559)
Q Consensus 170 eeEv~eLqekl~q~ekEIselr~~iq~LeQe 200 (559)
-.=+..+.+.+.++..+...+..++.-+.+.
T Consensus 334 GaplvkIkqavsKLk~et~~mnv~igv~ehs 364 (384)
T KOG0972|consen 334 GAPLVKIKQAVSKLKEETQTMNVQIGVFEHS 364 (384)
T ss_pred CchHHHHHHHHHHHHHHHHhhhhheehhhHH
Confidence 2223334444455555555555444444443
No 380
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.73 E-value=3.2e+02 Score=31.71 Aligned_cols=136 Identities=17% Similarity=0.112 Sum_probs=75.8
Q ss_pred hHHHHHHHhHHHhHHHHHHHHHHHhHhhhhHHHH----------HHHHHHHHHHHHHHHHHHHhHHHHH--------HHH
Q 008630 34 GQLLVKLESQRCEINELKQELEFKSKEVEGVKEM----------QKGLIQLAQSKACEIKKKCDQLEEH--------EEK 95 (559)
Q Consensus 34 ~~~~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el----------~~~l~~~~~~~~keL~~~Qk~L~El--------e~k 95 (559)
..|-..+.|.+++|+--+|-+-.+-+-|.+.-|+ |.+-++..+..+.+...+....... +-.
T Consensus 246 ~llr~t~~~~e~riEtqkqtl~ardesIkkLlEmLq~kgmg~~~~~~df~~~~~~a~~~~h~r~~~er~IerLkeqr~rd 325 (654)
T KOG4809|consen 246 FLLRSTDPSGEQRIETQKQTLDARDESIKKLLEMLQRKGMGRSNQPRDFTKANLSAHEMAHMRMKVERIIERLKEQRERD 325 (654)
T ss_pred HHHHhcCchHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccccchhhHHHHHHhHHHHHhhhchHHHHHHHhcchhhhh
Confidence 4455677788888888777766665555443222 2223333333333333332221000 011
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 96 TKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVF 169 (559)
Q Consensus 96 I~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~l 169 (559)
-++...+|....+....|.++...+..++......+..+.....+|.+........|..++=.+++..+++-.+
T Consensus 326 erE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~km 399 (654)
T KOG4809|consen 326 ERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKM 399 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 23344455555556666666666666666666667777777666776666666667777666666666666555
No 381
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=60.71 E-value=1.5e+02 Score=33.38 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=10.8
Q ss_pred HHHhhhHHHHHHHhHHHhHHHHH
Q 008630 29 QEEKTGQLLVKLESQRCEINELK 51 (559)
Q Consensus 29 ~e~~~~~~~~~~~sl~~~~~~l~ 51 (559)
++++-+-||-++---+++|+.+.
T Consensus 438 ~ldaqG~LVqkIlETkke~e~~g 460 (583)
T KOG3809|consen 438 RLDAQGALVQKILETKKEIEDGG 460 (583)
T ss_pred hhhhhhhHHHHHHHHHHHHHhcC
Confidence 34555555554444444444433
No 382
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=60.46 E-value=2.9 Score=48.16 Aligned_cols=26 Identities=4% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhCCCCcccccc
Q 008630 281 AYKRLKSQYNYICAKFGLTTDKMTSE 306 (559)
Q Consensus 281 eyk~LKSqi~~L~~k~~~~~~~~~~~ 306 (559)
-+..+...|..||.+.-+.++....+
T Consensus 287 ~I~~~R~ei~elWd~~~~s~eer~~F 312 (619)
T PF03999_consen 287 FIEKKRQEIEELWDKCHYSEEERQAF 312 (619)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 44566777888888888877766554
No 383
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=60.02 E-value=52 Score=30.61 Aligned_cols=65 Identities=12% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008630 226 VRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFG 297 (559)
Q Consensus 226 ie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~ 297 (559)
+..+...+..+......+.+.....+..++.++.++... -..+..+..+|..+.+++..+..+|+
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~-------~~~~~~L~~~~~~k~~~~~~l~~~~s 93 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQEL-------YEELKELESEYQEKEQQQDELSSNYS 93 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHccCC
No 384
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=59.99 E-value=2.2e+02 Score=29.57 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 134 LFKKIEKLSLDISHYKQLLADEKKEK 159 (559)
Q Consensus 134 L~~eIe~Le~eie~~e~eLee~EkEk 159 (559)
+..++..+...+...+..|...+..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~a~~~~ 120 (327)
T TIGR02971 95 LFKDVAAQQATLNRLEAELETAQREV 120 (327)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334344444444444444443
No 385
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=59.97 E-value=1.9e+02 Score=28.78 Aligned_cols=43 Identities=14% Similarity=-0.009 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHH
Q 008630 222 LLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQK 264 (559)
Q Consensus 222 l~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k 264 (559)
-+.+++.++.+|-.|..-......+|..+++.+.+-.++--..
T Consensus 118 klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlv 160 (178)
T PF14073_consen 118 KLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLV 160 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356666777777777777777767766666665555554444
No 386
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=59.89 E-value=83 Score=32.05 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008630 142 SLDISHYKQLLADEKKEKKCFLTKFEVF--EENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDF 203 (559)
Q Consensus 142 e~eie~~e~eLee~EkEkeel~ek~e~l--eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~ 203 (559)
...+.+.+..|++++.+.+++++-++.. -+++-.++++|.+.+.+|..++.++..|..++..
T Consensus 131 T~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 131 TEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 5667777777777777777776666543 5566677777777776666666666666665443
No 387
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=59.01 E-value=1e+02 Score=26.54 Aligned_cols=63 Identities=19% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 228 GLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYN 290 (559)
Q Consensus 228 ~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~ 290 (559)
.+.+-++.+..+++.+..++.........+..++...-.|+-+-+.++-++...+..+|+.|+
T Consensus 1 Rl~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YE 63 (79)
T PF08581_consen 1 RLNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYE 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 388
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=58.75 E-value=1.1e+02 Score=29.83 Aligned_cols=84 Identities=13% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----HH
Q 008630 68 QKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL----SL 143 (559)
Q Consensus 68 ~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L----e~ 143 (559)
|..|++.| -++....+...|..+...+.-.+.++..+-..+......+..+..-+......+..+ .+
T Consensus 93 Y~~L~~~i---------d~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g 163 (184)
T PF05791_consen 93 YDTLVEAI---------DQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENG 163 (184)
T ss_dssp HHHHHHHH---------HHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHH---------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccC
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008630 144 DISHYKQLLADEKKEKK 160 (559)
Q Consensus 144 eie~~e~eLee~EkEke 160 (559)
.+..++.+|.+...+++
T Consensus 164 ~I~~L~~~I~~~~~~I~ 180 (184)
T PF05791_consen 164 DIPQLQKQIENLNEEIK 180 (184)
T ss_dssp -HHHHHHHHHHHTGGG-
T ss_pred CHHHHHHHHHHHHHHHH
No 389
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=58.49 E-value=1.8e+02 Score=27.97 Aligned_cols=43 Identities=14% Similarity=0.272 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 157 KEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQ 199 (559)
Q Consensus 157 kEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQ 199 (559)
.+++++-.+++.++..+..|+..+..++.-++++++.++.+..
T Consensus 6 ~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~ 48 (145)
T COG1730 6 QELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLEN 48 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666667777777777777777777766666544
No 390
>PRK04325 hypothetical protein; Provisional
Probab=57.88 E-value=74 Score=26.92 Aligned_cols=47 Identities=13% Similarity=0.277 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 008630 92 HEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKI 138 (559)
Q Consensus 92 le~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eI 138 (559)
++.+|..++.++-+.+.-|..|.+-..+...+|..++.++..|..++
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444433
No 391
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=57.81 E-value=3e+02 Score=30.42 Aligned_cols=28 Identities=11% Similarity=0.197 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 008630 272 KKKRRDVIDAYKRLKSQYNYICAKFGLT 299 (559)
Q Consensus 272 ~rKl~~l~~eyk~LKSqi~~L~~k~~~~ 299 (559)
.-.+.+|..+....++.|+.|..++-.+
T Consensus 372 ~~~l~~L~Re~~~~r~~ye~lL~r~qe~ 399 (458)
T COG3206 372 QVQLRELEREAEAARSLYETLLQRYQEL 399 (458)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888888888888888887643
No 392
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=57.59 E-value=2.6e+02 Score=29.70 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=15.6
Q ss_pred HHHHHhHhhhhHHHHHHHHHHH
Q 008630 53 ELEFKSKEVEGVKEMQKGLIQL 74 (559)
Q Consensus 53 ~~~~k~~~v~~~~el~~~l~~~ 74 (559)
++-.|.+||-..++|.--|-+.
T Consensus 54 ~i~~k~~e~r~~r~lat~l~~~ 75 (338)
T KOG3647|consen 54 LIGDKIEELRKARELATDLTQR 75 (338)
T ss_pred HHHHHHHHHHHHHHHHhhcccc
Confidence 3566777788888887766654
No 393
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=57.44 E-value=93 Score=30.28 Aligned_cols=31 Identities=35% Similarity=0.549 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 170 EENVSRLQEELTKKTEEVEEGRKLQEQLLQQ 200 (559)
Q Consensus 170 eeEv~eLqekl~q~ekEIselr~~iq~LeQe 200 (559)
.+++..+..++.+++.++..++.|.+++..+
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555555555555555555555554443
No 394
>PRK04406 hypothetical protein; Provisional
Probab=57.12 E-value=89 Score=26.60 Aligned_cols=46 Identities=7% Similarity=0.141 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008630 95 KTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEK 140 (559)
Q Consensus 95 kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~ 140 (559)
.|..++..+.-|+.++.|+++-...+.+-+..-...+..|...+..
T Consensus 5 ~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~ 50 (75)
T PRK04406 5 TIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKY 50 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555444444444444444444433333
No 395
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=56.78 E-value=1.2e+02 Score=25.72 Aligned_cols=29 Identities=28% Similarity=0.204 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 008630 90 EEHEEKTKTLIAELNSHKKIVDELQRQLG 118 (559)
Q Consensus 90 ~Ele~kI~~le~e~k~leerL~~Leek~~ 118 (559)
.+++..|+.+..+-=.|.-+|-||++...
T Consensus 3 rEqe~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 3 REQEEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34555555555555555556666665554
No 396
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=56.72 E-value=1.4e+02 Score=26.23 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008630 109 IVDELQRQLGAKTEEVAREKELTENLFKKIEKL 141 (559)
Q Consensus 109 rL~~Leek~~kl~EEIee~kekleeL~~eIe~L 141 (559)
++-.|..+.+.+..+++.++...+.+...|-.+
T Consensus 30 ~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~ 62 (108)
T PF02403_consen 30 EIIELDQERRELQQELEELRAERNELSKEIGKL 62 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344444444455555555555555555544444
No 397
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=56.09 E-value=1e+02 Score=35.76 Aligned_cols=10 Identities=20% Similarity=0.424 Sum_probs=5.4
Q ss_pred cCCCCCCCCC
Q 008630 540 KYIPPLTPEG 549 (559)
Q Consensus 540 ~~~pp~TPpG 549 (559)
.|.-|.-||.
T Consensus 683 VWNspk~P~d 692 (907)
T KOG2264|consen 683 VWNSPKDPPD 692 (907)
T ss_pred EeCCCCCChh
Confidence 3445566665
No 398
>PRK02119 hypothetical protein; Provisional
Probab=56.02 E-value=85 Score=26.53 Aligned_cols=40 Identities=10% Similarity=0.172 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 008630 95 KTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENL 134 (559)
Q Consensus 95 kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL 134 (559)
+|..++.++-+.+.-+..|.+-..+...+|..++..+..|
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 399
>COG5293 Predicted ATPase [General function prediction only]
Probab=55.88 E-value=3.6e+02 Score=30.77 Aligned_cols=219 Identities=16% Similarity=0.097 Sum_probs=0.0
Q ss_pred hhhhhhhh--hHHHHHHHHHHhhhHHHHHHHhHH-------HhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHH
Q 008630 13 EENKTLKF--DKAKLLQEQEEKTGQLLVKLESQR-------CEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIK 83 (559)
Q Consensus 13 ~e~~~l~~--~~~~l~~~~e~~~~~~~~~~~sl~-------~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~ 83 (559)
++|+|++. ++.++| .+..--..+++ +..+++.---.++.-+|-+.++..|+.=-- +..++
T Consensus 190 ed~~~~~~~~dKi~~l-------~s~kKl~e~~~~~~ig~L~slee~e~~e~~~~~~v~~k~~tln~f~~~----a~~y~ 258 (591)
T COG5293 190 EDGKCAAEYYDKIQEL-------ESKKKLAELLRKTWIGSLDSLEEIETTELRKQDEVNKKQATLNTFDFH----AQDYA 258 (591)
T ss_pred ccchHHHHHHHHHHHH-------HHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccc----cccHH
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----------------------
Q 008630 84 KKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL---------------------- 141 (559)
Q Consensus 84 ~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L---------------------- 141 (559)
.....++-+.++|.++.++.=+.+....+-+..+.. ++..-=.-++.+...+--+
T Consensus 259 e~ee~vn~v~~~I~e~~n~~i~~q~~~~~~~~slk~---~~~~~pd~i~~~ye~vg~~fpg~Vkk~~e~v~~F~r~~~e~ 335 (591)
T COG5293 259 ETEELVNTVDERIAELNNRRISMQSHWKRVKTSLKE---QILFCPDEIQVLYEEVGVLFPGQVKKDFEHVIAFNRAITEE 335 (591)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhcchh---hccCChHHHHHHHHHhhhcChHHHHHhHHHHHHHHHHHHHH
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 008630 142 -----SLDISHYKQLLADEKKEKKCFLTKFEVF---------EENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSE 207 (559)
Q Consensus 142 -----e~eie~~e~eLee~EkEkeel~ek~e~l---------eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~E 207 (559)
+.++..++..|...+.+++.+-.++.+. =+++.-|.+.+....-++++++-+++.+.+-
T Consensus 336 R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~elae~~~rie~l~k~------- 408 (591)
T COG5293 336 RHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGELAELEYRIEPLRKL------- 408 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHH-------
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHH
Q 008630 208 ITKNKQEFEKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAE 271 (559)
Q Consensus 208 i~kle~ELEkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e 271 (559)
..+...++.|+-++-.+.+.+-..-++.-++-..+-..=.+++.+
T Consensus 409 -------------------~~~~~~i~~lkhe~l~~~~r~y~e~q~q~~~~~~~~~lF~~~~r~ 453 (591)
T COG5293 409 -------------------HALDQYIGTLKHECLDLEERIYTEVQQQCSLFASIGRLFKEMIRE 453 (591)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
No 400
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=55.53 E-value=3.3e+02 Score=30.23 Aligned_cols=103 Identities=18% Similarity=0.086 Sum_probs=58.9
Q ss_pred HHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 008630 52 QELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELT 131 (559)
Q Consensus 52 ~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekl 131 (559)
+.+..++.+.+-+.+++++..|-+|-+-..+......+.-++.++...++=.+-.-+..+.- .+=.-.....+
T Consensus 146 q~lq~~~~~~er~~~~y~~~~qElq~k~t~~~afn~tikife~q~~~~e~~~ka~~d~~~~e-------qG~qg~~e~~~ 218 (464)
T KOG4637|consen 146 QQLQEKSLEYERLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQCGTQENLSKAYIDRFRRE-------QGSQGNSEKEI 218 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHH-------hccCCchHHHH
Confidence 45778888888899999999988888888888777666666666665554222222111111 01111223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 132 ENLFKKIEKLSLDISHYKQLLADEKKEKKC 161 (559)
Q Consensus 132 eeL~~eIe~Le~eie~~e~eLee~EkEkee 161 (559)
..+..+.+.+++.+.++...|-.+++.++-
T Consensus 219 ~~~a~N~~~~ks~i~ei~~sl~~l~d~lk~ 248 (464)
T KOG4637|consen 219 GRIANNYDKLKSRIREIHDSLTRLEDDLKA 248 (464)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhHHHHHHH
Confidence 444444455555555555555555555443
No 401
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=55.16 E-value=4.6e+02 Score=31.81 Aligned_cols=225 Identities=14% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 70 GLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYK 149 (559)
Q Consensus 70 ~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e 149 (559)
+|++..--....|..+|..+.++...+.+-.--+.-..+++...+..-.....|+..++.++....+-++--+......+
T Consensus 338 nLV~~AlR~QEKI~RYQ~Dl~Elt~RLEEQ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQALD~QQTRAlQYQ 417 (1480)
T COG3096 338 NLVQTALRQQEKIERYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYQ 417 (1480)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q ss_pred HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------
Q 008630 150 QLLADEKK----------EKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFK--------------- 204 (559)
Q Consensus 150 ~eLee~Ek----------Ekeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~--------------- 204 (559)
+.+..+++ ..+....=+..+.....++-+.++.++.+++..........+.++..
T Consensus 418 QAi~ALekAk~Lc~l~dLt~~~~e~~~~~f~A~~e~~Te~lL~Le~kms~s~AA~sQF~~AyqLV~~iaGE~~RS~A~~~ 497 (1480)
T COG3096 418 QAIAALERAKELCHLPDLTADSAEEWLETFQAKEEEATEKLLSLEQKMSMAQAAHSQFEQAYQLVVAIAGELARSEAWDV 497 (1480)
T ss_pred HHHHHHHHHHHhcCccccchhhHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhCccchhhHHHH
Q ss_pred ----------hHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHH
Q 008630 205 ----------SSEITKNKQEF---EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAE 271 (559)
Q Consensus 205 ----------~~Ei~kle~EL---EkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e 271 (559)
+.........+ -.+++.-..........+..+-+.....-. -+.++..++++.-.|+.++.++-.-
T Consensus 498 A~~llR~~p~q~~~aq~~~~lr~~l~eLEqr~~qQqsa~~Ll~~f~kr~~~~l~-ae~lE~~~~e~eal~E~ls~~~s~~ 576 (1480)
T COG3096 498 ARELLREGPDQRHLAEQVQPLRMRLSELEQRLRQQQSAERLLADFCKRQGKNLD-AEELEALHQELEALIESLSDSVSNA 576 (1480)
T ss_pred HHHHHHhChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 008630 272 KKKRRDVIDAYKRLKSQYNYICAK 295 (559)
Q Consensus 272 ~rKl~~l~~eyk~LKSqi~~L~~k 295 (559)
...+..++.+..-|+.+|..+..+
T Consensus 577 ~EqR~~lRq~~e~L~~~~~~~~~~ 600 (1480)
T COG3096 577 REQRMALRQEQEQLQSRIQSLMQR 600 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
No 402
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=54.91 E-value=1.8e+02 Score=26.91 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHH
Q 008630 231 EKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQK 264 (559)
Q Consensus 231 ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k 264 (559)
...+.+......+...+......|+.++.+|...
T Consensus 74 ~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~a 107 (139)
T PF05615_consen 74 RERENYEQLNEEIEQEIEQAKKEIEELKEELEEA 107 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555666666677777777777776
No 403
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=54.69 E-value=1.5e+02 Score=26.06 Aligned_cols=52 Identities=12% Similarity=0.110 Sum_probs=25.2
Q ss_pred HHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 102 ELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLA 153 (559)
Q Consensus 102 e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLe 153 (559)
....+...+.-++++..++..|++......-.+....+.+..++..+...+.
T Consensus 18 ~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~ 69 (96)
T PF08647_consen 18 QADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLS 69 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3333333444444444445556666555555555555555444444444333
No 404
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=54.29 E-value=3.9e+02 Score=30.68 Aligned_cols=92 Identities=17% Similarity=0.245 Sum_probs=38.2
Q ss_pred HHHHhhhhHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHH
Q 008630 198 LQQIDFKSSEITKNKQEF--EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKR 275 (559)
Q Consensus 198 eQeLE~~~~Ei~kle~EL--EkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl 275 (559)
..++.....+...+.+|+ ....-.+...+..+...+..+.....+ ..+...-..++++..-|......-..+-+-+
T Consensus 75 ~~~l~~a~~e~~~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~--~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~ 152 (593)
T PF06248_consen 75 QPQLRDAAEELQELKRELEENEQLLEVLEQLQEIDELLEEVEEALKE--GNYLDAADLLEELKSLLDDLKSSKFEELKIL 152 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHhcCcCcccccHHH
Confidence 333344444444444444 333333444454444444444333222 2233333333444444433211111123444
Q ss_pred HHHHHHHHHHHHHHHH
Q 008630 276 RDVIDAYKRLKSQYNY 291 (559)
Q Consensus 276 ~~l~~eyk~LKSqi~~ 291 (559)
..++.+|..+++.+.+
T Consensus 153 ~~Lk~e~~~lr~~L~~ 168 (593)
T PF06248_consen 153 KLLKDEYSELRENLQY 168 (593)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555566666665555
No 405
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=54.03 E-value=3.3e+02 Score=32.70 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 142 SLDISHYKQLLADEKKEKKCFLTKFEVF 169 (559)
Q Consensus 142 e~eie~~e~eLee~EkEkeel~ek~e~l 169 (559)
...++..+.-+..-...++.+.+.+...
T Consensus 501 ~~ii~~A~~~~~~~~~~~~~li~~l~~~ 528 (782)
T PRK00409 501 ENIIEEAKKLIGEDKEKLNELIASLEEL 528 (782)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 4444444444444444444444433333
No 406
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=53.80 E-value=2.8e+02 Score=30.09 Aligned_cols=41 Identities=22% Similarity=0.256 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Q 008630 175 RLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF 215 (559)
Q Consensus 175 eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL 215 (559)
+|+.....+..+-..+......+..+++.+.......+.+|
T Consensus 141 ~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L 181 (342)
T PF06632_consen 141 RLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDL 181 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444455555555555555555555444
No 407
>PRK02793 phi X174 lysis protein; Provisional
Probab=53.27 E-value=94 Score=26.15 Aligned_cols=43 Identities=21% Similarity=0.238 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 008630 93 EEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLF 135 (559)
Q Consensus 93 e~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~ 135 (559)
+.+|..++..+-+.+.-|..|.+-..+...+|..++.++..|.
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~ 49 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLT 49 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333333333333333333333
No 408
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=52.78 E-value=1.2e+02 Score=24.72 Aligned_cols=46 Identities=20% Similarity=0.316 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008630 95 KTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEK 140 (559)
Q Consensus 95 kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~ 140 (559)
+|..+.+++..|..++..|......+..++...+.....+.++|+-
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455555555555555544444444444444444444444443
No 409
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=52.76 E-value=48 Score=33.76 Aligned_cols=63 Identities=29% Similarity=0.343 Sum_probs=32.6
Q ss_pred HHhhhHH---HHHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhH
Q 008630 30 EEKTGQL---LVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSH 106 (559)
Q Consensus 30 e~~~~~~---~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~l 106 (559)
+|-|.++ .+||++++...+.|..-+. +.+.|++..+++ .+|.++...|..++..++.+
T Consensus 128 ~DvT~~y~D~~arl~~l~~~~~rl~~ll~-ka~~~~d~l~ie------------------~~L~~v~~eIe~~~~~~~~l 188 (262)
T PF14257_consen 128 EDVTEQYVDLEARLKNLEAEEERLLELLE-KAKTVEDLLEIE------------------RELSRVRSEIEQLEGQLKYL 188 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHH
Confidence 4555543 3677777777777664444 333444433333 33334455555555555555
Q ss_pred HHHHH
Q 008630 107 KKIVD 111 (559)
Q Consensus 107 eerL~ 111 (559)
.+++.
T Consensus 189 ~~~v~ 193 (262)
T PF14257_consen 189 DDRVD 193 (262)
T ss_pred HHhhc
Confidence 55544
No 410
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=52.34 E-value=5.3e+02 Score=31.66 Aligned_cols=68 Identities=21% Similarity=0.118 Sum_probs=34.0
Q ss_pred HHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 102 ELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL---SLDISHYKQLLADEKKEKKCFLTKFEVF 169 (559)
Q Consensus 102 e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L---e~eie~~e~eLee~EkEkeel~ek~e~l 169 (559)
+++-+.+...+|..+...+.++..--.++...|...++.. .+..-.....+...+.+.++.+..++..
T Consensus 621 d~~~~~q~~~EL~~q~~~L~ee~~af~~~v~~l~~~~e~~~~~ls~~~~~~r~~~~~e~~~Ee~r~~le~~ 691 (984)
T COG4717 621 DLKKLMQKKAELTHQVARLREEQAAFEERVEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLALEGN 691 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 3444455555555555555555555555555555555444 2333333444555555555554444333
No 411
>COG5283 Phage-related tail protein [Function unknown]
Probab=52.25 E-value=5.9e+02 Score=32.21 Aligned_cols=198 Identities=11% Similarity=0.104 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 87 DQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKF 166 (559)
Q Consensus 87 k~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~ 166 (559)
+.+|.|.+.|..-....+++++++..-. .=+..-..+.+.|....+.....++++.+++.+........+..+
T Consensus 22 ~~in~L~ssi~~~~~~~k~~e~q~k~t~-------~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay 94 (1213)
T COG5283 22 KNINVLKSSIKDSTQFWKMLEKQQKLTK-------DGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAY 94 (1213)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhh-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHH----HH
Q 008630 167 EVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF---EKEKQLLLDKVRGLEEKANELK----KN 239 (559)
Q Consensus 167 e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL---EkE~~el~kkie~l~ek~eeLq----~e 239 (559)
+.+-.++.+....+..+..++....+++..-+..+..+.-++.....-. -.....--.++-+....+..+. ..
T Consensus 95 ~e~~~q~tqae~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t~k~maaQ~~l~eqt~n~~g~a~~~~~gl~esf~~q 174 (1213)
T COG5283 95 QEYNAQYTQAENKLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLNKSMAAQARLLEQTGNKFGTADAKVVGLRESFGRQ 174 (1213)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHhhhhHhHHHHHH
Q ss_pred HHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhCC
Q 008630 240 FCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDA-YKRLKSQYNYICAKFGL 298 (559)
Q Consensus 240 ieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~e-yk~LKSqi~~L~~k~~~ 298 (559)
.+.+..+++.+..--..+.+-+... +.+++..... ...|++....+....|+
T Consensus 175 ~~aln~q~~~t~k~~~~~~~~l~e~-------qq~~~q~~~a~~~~L~~s~~q~~~s~~q 227 (1213)
T COG5283 175 TEALNKQLERTKKVADALTYVLDEA-------QQKLSQALSARLERLQESRTQMSQSSGQ 227 (1213)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 412
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=52.17 E-value=1.3e+02 Score=26.88 Aligned_cols=33 Identities=27% Similarity=0.321 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008630 170 EENVSRLQEELTKKTEEVEEGRKLQEQLLQQID 202 (559)
Q Consensus 170 eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE 202 (559)
..++..|+-.+.+..-++..+...++.+.+.++
T Consensus 64 ~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 64 RDDVHDLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444333
No 413
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=52.15 E-value=14 Score=30.29 Aligned_cols=40 Identities=23% Similarity=0.211 Sum_probs=30.7
Q ss_pred HHHHhhHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHH
Q 008630 100 IAELNSHKKIVDELQRQ----LGAKTEEVAREKELTENLFKKIE 139 (559)
Q Consensus 100 e~e~k~leerL~~Leek----~~kl~EEIee~kekleeL~~eIe 139 (559)
+..+.+++..|.||++. +..+..||+.++..-.+|..++.
T Consensus 2 ~~qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~~kL~ 45 (60)
T PF14916_consen 2 EQQVQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNKDLTFKLI 45 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeee
Confidence 46788899999999988 45577888888877777766543
No 414
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=51.96 E-value=4.1e+02 Score=30.23 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 156 KKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLL 198 (559)
Q Consensus 156 EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~Le 198 (559)
.+|+++++-+..--.+++.-++-+++.+..+|.++..++-.++
T Consensus 308 ~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~ 350 (554)
T KOG4677|consen 308 RKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLE 350 (554)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3455555444444466777777777777666666655544443
No 415
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=51.76 E-value=2.9e+02 Score=29.20 Aligned_cols=92 Identities=9% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHH
Q 008630 187 VEEGRKLQEQLLQQIDFKSSEITKNKQEFEKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTA 266 (559)
Q Consensus 187 Iselr~~iq~LeQeLE~~~~Ei~kle~ELEkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~ 266 (559)
+..++..++++.+++++.-+-.......|...+..-..=+.++++-++.|....++++.....+.+
T Consensus 87 ~~lgkeelqkl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~se-------------- 152 (268)
T PF11802_consen 87 LTLGKEELQKLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETFSE-------------- 152 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch--------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008630 267 ELMAEKKKRRDVIDAYKRLKSQYNYICAKFG 297 (559)
Q Consensus 267 el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~ 297 (559)
.+-.+++......++..+..|...+|
T Consensus 153 -----~rv~~el~~K~~~~k~~~e~Ll~~Lg 178 (268)
T PF11802_consen 153 -----SRVFQELKTKIEKIKEYKEKLLSFLG 178 (268)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHH
No 416
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=51.70 E-value=3.4e+02 Score=32.61 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 142 SLDISHYKQLLADEKKEKKCFLTKFEVF 169 (559)
Q Consensus 142 e~eie~~e~eLee~EkEkeel~ek~e~l 169 (559)
...++..+.-+......++++.+.+...
T Consensus 496 ~~ii~~A~~~~~~~~~~~~~li~~L~~~ 523 (771)
T TIGR01069 496 HFIIEQAKTFYGEFKEEINVLIEKLSAL 523 (771)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333
No 417
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=51.69 E-value=73 Score=32.93 Aligned_cols=43 Identities=7% Similarity=0.088 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 231 EKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVID 280 (559)
Q Consensus 231 ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~ 280 (559)
.-.-+|+.+++.++.+|..+++.++.+..+|+.. .++-+++..
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~-------~~rq~~~y~ 96 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQV-------VERQKQIYL 96 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHH
Confidence 3344556666666666666666666666666666 555555444
No 418
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=51.69 E-value=3e+02 Score=28.69 Aligned_cols=16 Identities=19% Similarity=0.104 Sum_probs=10.9
Q ss_pred HHHHHHhhhhhhhhhh
Q 008630 5 QLQKQQAVEENKTLKF 20 (559)
Q Consensus 5 ~~~~~~~~~e~~~l~~ 20 (559)
..+++.+|++....|.
T Consensus 38 e~e~~~A~~~A~~~Y~ 53 (297)
T PF02841_consen 38 EAENRAAVEKAVEHYE 53 (297)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566777777777666
No 419
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=51.54 E-value=1.6e+02 Score=31.95 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=35.2
Q ss_pred HHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 100 IAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADE 155 (559)
Q Consensus 100 e~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~ 155 (559)
+.+...+++.-..|++.++.....+++....+..-...|.+-...+..+...|...
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666777777777777777777777666666666666544444444444443
No 420
>PLN02678 seryl-tRNA synthetase
Probab=51.44 E-value=1.2e+02 Score=34.16 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 008630 221 LLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFGLTT 300 (559)
Q Consensus 221 el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~~~~ 300 (559)
.+..+++.++.+.+.+.+++-.+. ......+++..++..+ +.++..+..++..+++.+..++..++
T Consensus 44 ~l~~~~e~lr~erN~~sk~I~~~k----~~~~~~~~l~~~~~~L-------k~ei~~le~~~~~~~~~l~~~~~~iP--- 109 (448)
T PLN02678 44 QRQFELDSLRKEFNKLNKEVAKLK----IAKEDATELIAETKEL-------KKEITEKEAEVQEAKAALDAKLKTIG--- 109 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----hCCCcHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhCC---
Confidence 333444444444444444443321 1123445666666666 77777788888888999998888887
Q ss_pred cccccc
Q 008630 301 DKMTSE 306 (559)
Q Consensus 301 ~~~~~~ 306 (559)
|++++
T Consensus 110 -Ni~~~ 114 (448)
T PLN02678 110 -NLVHD 114 (448)
T ss_pred -CCCCc
Confidence 66655
No 421
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=51.43 E-value=2.4e+02 Score=27.38 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 216 EKEKQLLLDKVRGLEEKANELKKNFCE 242 (559)
Q Consensus 216 EkE~~el~kkie~l~ek~eeLq~eiee 242 (559)
+.+...+..+++.++.....|......
T Consensus 88 ~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 88 RQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444444445555544444444433333
No 422
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=50.85 E-value=1.2e+02 Score=33.46 Aligned_cols=73 Identities=14% Similarity=0.293 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 008630 219 KQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFGL 298 (559)
Q Consensus 219 ~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~~ 298 (559)
..++..+++.++.+.+.+.+++..+... ....+++..+...+ +.++..+..+++.++..+..++-+++
T Consensus 37 ~r~l~~~~~~lr~~rn~~sk~i~~~~~~----~~~~~~l~~~~~~l-------~~~~~~~~~~~~~~~~~~~~~~~~iP- 104 (425)
T PRK05431 37 RRELQTELEELQAERNALSKEIGQAKRK----GEDAEALIAEVKEL-------KEEIKALEAELDELEAELEELLLRIP- 104 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCcHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 3334444555555555555554332111 12345666677666 77788888888899999999888887
Q ss_pred CCcccccc
Q 008630 299 TTDKMTSE 306 (559)
Q Consensus 299 ~~~~~~~~ 306 (559)
|++++
T Consensus 105 ---N~~~~ 109 (425)
T PRK05431 105 ---NLPHD 109 (425)
T ss_pred ---CCCCc
Confidence 66666
No 423
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=50.73 E-value=3.4e+02 Score=28.92 Aligned_cols=26 Identities=4% Similarity=-0.009 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008630 272 KKKRRDVIDAYKRLKSQYNYICAKFG 297 (559)
Q Consensus 272 ~rKl~~l~~eyk~LKSqi~~L~~k~~ 297 (559)
......+..+....+..|+.+..++.
T Consensus 277 ~~~~~~L~re~~~a~~~y~~~l~r~~ 302 (362)
T TIGR01010 277 TADYQRLVLQNELAQQQLKAALTSLQ 302 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666666666666665
No 424
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=50.37 E-value=1.4e+02 Score=29.11 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=10.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHH
Q 008630 110 VDELQRQLGAKTEEVAREKELTENLF 135 (559)
Q Consensus 110 L~~Leek~~kl~EEIee~kekleeL~ 135 (559)
+..|+.++.+...+++.++.+.+++.
T Consensus 163 i~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 163 IEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444443
No 425
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=50.28 E-value=1.2e+02 Score=28.40 Aligned_cols=51 Identities=10% Similarity=0.122 Sum_probs=29.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 96 TKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDIS 146 (559)
Q Consensus 96 I~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie 146 (559)
+..+...++.+.+++..|+.........|++.+.+...|..++-.+-..++
T Consensus 46 ~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~e 96 (141)
T PF13874_consen 46 IAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQE 96 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444555555555556666777777777777777666633333
No 426
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=50.24 E-value=5.7e+02 Score=31.42 Aligned_cols=232 Identities=19% Similarity=0.114 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhHHHHHHHH---HHhhhHHHHHHHhHHHhHHHHHHHHHHHhHhhhhH-HHHHHH----HHHHHHHHHHH-
Q 008630 11 AVEENKTLKFDKAKLLQEQ---EEKTGQLLVKLESQRCEINELKQELEFKSKEVEGV-KEMQKG----LIQLAQSKACE- 81 (559)
Q Consensus 11 ~~~e~~~l~~~~~~l~~~~---e~~~~~~~~~~~sl~~~~~~l~~~~~~k~~~v~~~-~el~~~----l~~~~~~~~ke- 81 (559)
...+++.|...+.++++++ --....-.++..-.+...+.|+.-+......+.+- ++++.+ |-+-++-....
T Consensus 361 l~~e~~~l~~~~d~~~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~v~~~~ 440 (913)
T KOG0244|consen 361 LPFENVTLEETLDALLQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTDSCMNLLSEDSNEDASDKSASLPKPLEPVDSGT 440 (913)
T ss_pred hhhhhhhhhhhHHHHhcchhhhhhhhhHHHHhcchhhhhHHHHHHHHHHHHHHHHHhHhHHhhhccccCCcccccccccc
Q ss_pred --------------HHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 82 --------------IKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISH 147 (559)
Q Consensus 82 --------------L~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~ 147 (559)
...-......+-.++..+.-++.-+++++...+.-.+++..+........++.....-.++.++..
T Consensus 441 ~e~~~~~~~~~~e~~~~~~~~~~~~~~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~ 520 (913)
T KOG0244|consen 441 EEIGMNTDTSGDEAAEKELSETIGHPQKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSP 520 (913)
T ss_pred ccccccccCCCchhhhcccccCccchHHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH---HHHHHHHHH
Q 008630 148 YKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF---EKEKQLLLD 224 (559)
Q Consensus 148 ~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL---EkE~~el~k 224 (559)
++.+...+-.++..+......+.++.......+-.-...+......+-.+......-.....++.+++ +.-+.++..
T Consensus 521 le~E~~~l~~el~~~~~~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~ 600 (913)
T KOG0244|consen 521 LESERSRLRNELNVFNRLAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLR 600 (913)
T ss_pred cccccHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008630 225 KVRGLEEKANELKKNFCE 242 (559)
Q Consensus 225 kie~l~ek~eeLq~eiee 242 (559)
....=-+.+..|+...+.
T Consensus 601 ~~~~d~ekfr~~K~~~~K 618 (913)
T KOG0244|consen 601 VMKEDAEKFRQWKDRTEK 618 (913)
T ss_pred HHhhhHHHHHHHHHHHHH
No 427
>PRK02119 hypothetical protein; Provisional
Probab=49.94 E-value=1e+02 Score=26.05 Aligned_cols=41 Identities=5% Similarity=0.070 Sum_probs=18.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 008630 97 KTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKK 137 (559)
Q Consensus 97 ~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~e 137 (559)
..++..+.-|+.++.|.++-...+.+-+.+-...+..|...
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~q 45 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQ 45 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555544444444444444444333333
No 428
>PRK00295 hypothetical protein; Provisional
Probab=49.94 E-value=1e+02 Score=25.67 Aligned_cols=17 Identities=12% Similarity=0.165 Sum_probs=6.0
Q ss_pred HHHHHHhhHHHHHHHHH
Q 008630 98 TLIAELNSHKKIVDELQ 114 (559)
Q Consensus 98 ~le~e~k~leerL~~Le 114 (559)
.++.++-+.+.-|..|.
T Consensus 9 ~LE~kla~qE~tie~Ln 25 (68)
T PRK00295 9 ELESRQAFQDDTIQALN 25 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 429
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=49.69 E-value=64 Score=36.45 Aligned_cols=35 Identities=11% Similarity=0.039 Sum_probs=15.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 008630 80 CEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQ 114 (559)
Q Consensus 80 keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Le 114 (559)
+.+...|..+.+++.++..+..++..+......++
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq~~saq~~dle 103 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQ 103 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 44444454555555444444333333333333333
No 430
>PRK00846 hypothetical protein; Provisional
Probab=47.96 E-value=1.3e+02 Score=25.91 Aligned_cols=45 Identities=24% Similarity=0.311 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 008630 93 EEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKK 137 (559)
Q Consensus 93 e~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~e 137 (559)
+.+|..++..+-+.+.-|..|.+-..+....|..++.++..+..+
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~r 56 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLED 56 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444333
No 431
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=47.69 E-value=1e+02 Score=30.98 Aligned_cols=16 Identities=31% Similarity=0.343 Sum_probs=6.5
Q ss_pred HHhhHHHHHHHHHHHH
Q 008630 102 ELNSHKKIVDELQRQL 117 (559)
Q Consensus 102 e~k~leerL~~Leek~ 117 (559)
+...|..+|..|+.++
T Consensus 97 EevrLkrELa~Le~~l 112 (195)
T PF12761_consen 97 EEVRLKRELAELEEKL 112 (195)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 432
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=47.50 E-value=4.7e+02 Score=29.64 Aligned_cols=106 Identities=20% Similarity=0.163 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhH-----HHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----cchhhhH
Q 008630 186 EVEEGRKLQEQLLQQIDFKSS-----EITKNKQEF-EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQG----WGMDSND 255 (559)
Q Consensus 186 EIselr~~iq~LeQeLE~~~~-----Ei~kle~EL-EkE~~el~kkie~l~ek~eeLq~eieelkekL~----~~e~eie 255 (559)
+|+.+|.++.+.+.+++.+.. .+..+-+-- |.|++.+..+..+..-.+......-+.++.+.. .+-..+.
T Consensus 310 elE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahg 389 (575)
T KOG4403|consen 310 ELEQLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHG 389 (575)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheeeeeccc
Confidence 566666666666666665521 111111111 555555555544443333333333333333322 2222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHh
Q 008630 256 KLLQEIEQKTAELMAEKKKRRDVIDAYKRL---KSQYNYICA 294 (559)
Q Consensus 256 eL~eqL~~k~~el~~e~rKl~~l~~eyk~L---KSqi~~L~~ 294 (559)
+-..+ .|.-.+.-+..+.++.+..... =.||+.+|+
T Consensus 390 sslDd---VD~kIleak~al~evtt~lrErl~RWqQIE~lcG 428 (575)
T KOG4403|consen 390 SSLDD---VDHKILEAKSALSEVTTLLRERLHRWQQIESLCG 428 (575)
T ss_pred cchhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 22222 2222333377777666532221 246777885
No 433
>PRK00736 hypothetical protein; Provisional
Probab=47.47 E-value=1e+02 Score=25.59 Aligned_cols=47 Identities=9% Similarity=0.110 Sum_probs=27.5
Q ss_pred HHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 238 KNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNY 291 (559)
Q Consensus 238 ~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~ 291 (559)
..+..|+.++...+.-|+.|-..+... .+.++.+......|..++..
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Q-------q~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQ-------WKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666 66666555554455544444
No 434
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=47.33 E-value=2.1e+02 Score=28.07 Aligned_cols=73 Identities=18% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 98 TLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEE 171 (559)
Q Consensus 98 ~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~lee 171 (559)
.+..-|.+| +.+.........+..|...++..+..|..+++.|+.++..+...+...++.++.+....+..+.
T Consensus 81 tl~~vI~fL-q~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 81 TLQDVISFL-QNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred CHHHHHHHH-HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 435
>PRK00846 hypothetical protein; Provisional
Probab=47.28 E-value=1.4e+02 Score=25.83 Aligned_cols=18 Identities=11% Similarity=0.062 Sum_probs=10.8
Q ss_pred hHHHHHHHhHHHhHHHHH
Q 008630 34 GQLLVKLESQRCEINELK 51 (559)
Q Consensus 34 ~~~~~~~~sl~~~~~~l~ 51 (559)
..+..|+..||.++.+..
T Consensus 9 ~~le~Ri~~LE~rlAfQe 26 (77)
T PRK00846 9 QALEARLVELETRLSFQE 26 (77)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 344566666666666655
No 436
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=47.18 E-value=2.3e+02 Score=25.93 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 008630 272 KKKRRDVIDAYKRLKSQYNYICA 294 (559)
Q Consensus 272 ~rKl~~l~~eyk~LKSqi~~L~~ 294 (559)
.++..+...+|..++..|..-|+
T Consensus 94 ~~~f~~~m~~fq~~Q~~~~~~~k 116 (151)
T cd00179 94 SKKFVEVMTEFNKAQRKYRERYK 116 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788888888877766443
No 437
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.05 E-value=3.3e+02 Score=27.80 Aligned_cols=85 Identities=14% Similarity=0.145 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhhhHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008630 174 SRLQEELTKKTEEVEEGRKLQEQLLQ------QIDFKSSEITKNKQEF--EKEKQLLLDKVRGLEEKANELKKNFCEKSS 245 (559)
Q Consensus 174 ~eLqekl~q~ekEIselr~~iq~LeQ------eLE~~~~Ei~kle~EL--EkE~~el~kkie~l~ek~eeLq~eieelke 245 (559)
.++.++|.+..++|+.+..++..++. +...+.+=+..+...- .++..++.+.++.+...-+.+-..++-...
T Consensus 99 ~Eiersi~~a~~kie~lkkql~eaKi~r~nrqe~~~l~kvis~~p~RsEt~k~l~el~keleel~~~~~s~~~klelrRk 178 (222)
T KOG3215|consen 99 LEIERSIQKARNKIELLKKQLHEAKIVRLNRQEYSALSKVISDCPARSETDKDLNELKKELEELDDLNNSTETKLELRRK 178 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Confidence 34444555555555555555544443 3333333333333222 444555555555554444444444444444
Q ss_pred hhhcchhhhHHHH
Q 008630 246 KQGWGMDSNDKLL 258 (559)
Q Consensus 246 kL~~~e~eieeL~ 258 (559)
+..-+...+..+.
T Consensus 179 qf~~lm~~~~elQ 191 (222)
T KOG3215|consen 179 QFKYLMVSTEELQ 191 (222)
T ss_pred cchHHHhhHHHHH
Confidence 4444444444333
No 438
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=47.04 E-value=6.3e+02 Score=30.99 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Q 008630 179 ELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF 215 (559)
Q Consensus 179 kl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL 215 (559)
.+..++.+....+..++.+.++++.+-.++..+..++
T Consensus 996 h~kefE~~mrdhrselEe~kKe~eaiineiee~eaeI 1032 (1424)
T KOG4572|consen 996 HEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEI 1032 (1424)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666777777777777777777777777776
No 439
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=46.91 E-value=1.5e+02 Score=27.04 Aligned_cols=45 Identities=7% Similarity=0.139 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 105 SHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYK 149 (559)
Q Consensus 105 ~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e 149 (559)
...++++-|.+......++|.++...++.-...++++...+....
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~in 94 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSIN 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444433333333
No 440
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=46.30 E-value=1.7e+02 Score=34.58 Aligned_cols=19 Identities=32% Similarity=0.295 Sum_probs=0.0
Q ss_pred hhHHHHHHHhHHHhHHHHH
Q 008630 33 TGQLLVKLESQRCEINELK 51 (559)
Q Consensus 33 ~~~~~~~~~sl~~~~~~l~ 51 (559)
.+++..+|+.++..|..+.
T Consensus 33 ~de~erkL~~le~~I~k~~ 51 (759)
T PF01496_consen 33 CDEMERKLRFLEEEIKKLK 51 (759)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3444455555555554444
No 441
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=46.22 E-value=2e+02 Score=24.91 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008630 155 EKKEKKCFLTKFEVF-EENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDF 203 (559)
Q Consensus 155 ~EkEkeel~ek~e~l-eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~ 203 (559)
+++..+.+..+++.. +.....|..++..++..+..+...+...+..+..
T Consensus 55 L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~ 104 (127)
T smart00502 55 LNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEALNS 104 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333444455555444 5555666666666666666666666666665554
No 442
>PLN02939 transferase, transferring glycosyl groups
Probab=45.52 E-value=6.9e+02 Score=31.06 Aligned_cols=27 Identities=15% Similarity=0.059 Sum_probs=15.5
Q ss_pred HHHHHhHHHhHHHHHHHHHHHhHhhhh
Q 008630 37 LVKLESQRCEINELKQELEFKSKEVEG 63 (559)
Q Consensus 37 ~~~~~sl~~~~~~l~~~~~~k~~~v~~ 63 (559)
+.-+++-++.|=-|-|--....+.++.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (977)
T PLN02939 134 VGMIQNAEKNILLLNQARLQALEDLEK 160 (977)
T ss_pred HHHHHHHHhhhHhHHHHHHHHHHHHHH
Confidence 345567777777666554444444443
No 443
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=45.48 E-value=1.5e+02 Score=27.70 Aligned_cols=67 Identities=18% Similarity=0.181 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 008630 71 LIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKK 137 (559)
Q Consensus 71 l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~e 137 (559)
|.+.++....++..++..|.++..++..+...--....++..+..++..+...+-+.-..++-+...
T Consensus 35 L~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~ 101 (141)
T PF13874_consen 35 LKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNR 101 (141)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344445555555666666666666666655545556667777777777777666666665544443
No 444
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=45.33 E-value=1.7e+02 Score=32.41 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCcccccc
Q 008630 254 NDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFGLTTDKMTSE 306 (559)
Q Consensus 254 ieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~~~~~~~~~~ 306 (559)
.+++..++..+ +.++..+..+.+.++..+..+.-+++ |++++
T Consensus 71 ~~~l~~~~~~l-------~~~~~~~~~~~~~~~~~~~~~~~~lP----N~~~~ 112 (418)
T TIGR00414 71 IEEIKKELKEL-------KEELTELSAALKALEAELQDKLLSIP----NIPHE 112 (418)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhCC----CCCCc
Confidence 45666666666 77777777777888888888887776 66665
No 445
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=44.99 E-value=1.4e+02 Score=30.81 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=11.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008630 112 ELQRQLGAKTEEVAREKELTENLFKKIEKL 141 (559)
Q Consensus 112 ~Leek~~kl~EEIee~kekleeL~~eIe~L 141 (559)
.|+.++..+..||.+++..++.+..+++.+
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~ 87 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQV 87 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333333333344444444444444433333
No 446
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=44.90 E-value=3.3e+02 Score=27.16 Aligned_cols=108 Identities=12% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 78 KACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKK 157 (559)
Q Consensus 78 ~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~Ek 157 (559)
|...+.....++.+.+.-+......+..-+.++.....-......++..++..++.+..++..+.........+|.+.-.
T Consensus 65 Kq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~q 144 (188)
T PF05335_consen 65 KQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQ 144 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 158 EKKCFLTKFEVFEENVSRLQEELTKKTE 185 (559)
Q Consensus 158 Ekeel~ek~e~leeEv~eLqekl~q~ek 185 (559)
-++.-+.+++.+...+......|-.+.+
T Consensus 145 LLeaAk~Rve~L~~QL~~Ar~D~~~tk~ 172 (188)
T PF05335_consen 145 LLEAAKRRVEELQRQLQAARADYEKTKK 172 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 447
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=44.76 E-value=1.3e+02 Score=34.82 Aligned_cols=31 Identities=6% Similarity=-0.019 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 125 AREKELTENLFKKIEKLSLDISHYKQLLADE 155 (559)
Q Consensus 125 ee~kekleeL~~eIe~Le~eie~~e~eLee~ 155 (559)
......++.+...++.+..+|+++...|+++
T Consensus 601 ~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~ 631 (638)
T PRK10636 601 TACLQQQASAKSGLEECEMAWLEAQEQLEQM 631 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444433
No 448
>PRK00106 hypothetical protein; Provisional
Probab=44.68 E-value=5.5e+02 Score=29.66 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=14.1
Q ss_pred hhhccccCCcccCCCCCCCCCCc
Q 008630 529 EHHEGVSRHRYKYIPPLTPEGFW 551 (559)
Q Consensus 529 ~~~~~~sRHR~~~~pp~TPpGFW 551 (559)
..++.+|.+| -++|+.||..|-
T Consensus 436 ~~AD~lsa~R-pgar~~s~~~~i 457 (535)
T PRK00106 436 AAADALSSAR-PGARNESMENYI 457 (535)
T ss_pred HHHHHhccCC-CCCCcCCHHHHH
Confidence 3456677777 666777776653
No 449
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.42 E-value=6.4e+02 Score=30.31 Aligned_cols=77 Identities=13% Similarity=0.253 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008630 65 KEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL 141 (559)
Q Consensus 65 ~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L 141 (559)
+++-++|.-.|......-.++++.|.+.+..|..+..++...+.+...-+.-..+++..|-.+-=--.+|..+|..|
T Consensus 50 r~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L 126 (793)
T KOG2180|consen 50 RRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTL 126 (793)
T ss_pred HHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHH
Confidence 34445677777777788888899999999999999999999999988888888888887777766666677766666
No 450
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=44.41 E-value=2e+02 Score=24.50 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 008630 66 EMQKGLIQLAQSKACEIKKKCD 87 (559)
Q Consensus 66 el~~~l~~~~~~~~keL~~~Qk 87 (559)
.=|.-|..-|+.....+.....
T Consensus 28 ~sQ~~L~~~i~~~~~~L~~~~~ 49 (92)
T PF14712_consen 28 QSQEELLQQIDRLNEKLKELNE 49 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554444
No 451
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=44.25 E-value=2.1e+02 Score=27.42 Aligned_cols=12 Identities=17% Similarity=0.302 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 008630 173 VSRLQEELTKKT 184 (559)
Q Consensus 173 v~eLqekl~q~e 184 (559)
+..+..+|....
T Consensus 29 ~~~~k~ql~~~d 40 (155)
T PF06810_consen 29 RDNLKTQLKEAD 40 (155)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 452
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=44.11 E-value=2.9e+02 Score=31.59 Aligned_cols=99 Identities=14% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHH
Q 008630 192 KLQEQLLQQIDFKSSEITKNKQEFEKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAE 271 (559)
Q Consensus 192 ~~iq~LeQeLE~~~~Ei~kle~ELEkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e 271 (559)
..+..+...++..-..+...+...--.+.-..+.++.+-..+.........+...+..+.....++++++...
T Consensus 400 ~~i~~ml~~V~~ii~~Lt~~~~~~L~~Ik~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l------- 472 (507)
T PF05600_consen 400 ESIEEMLSAVEEIISQLTNPRTQHLFMIKSSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQEL------- 472 (507)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhhC
Q 008630 272 KKKRRDVIDAYKRLKSQYNY-ICAKFG 297 (559)
Q Consensus 272 ~rKl~~l~~eyk~LKSqi~~-L~~k~~ 297 (559)
.-+++.+...-+.||++++- |.++|+
T Consensus 473 ~pkL~~l~~~Tr~Lq~~iE~~ISk~y~ 499 (507)
T PF05600_consen 473 EPKLDALVERTRELQKQIEADISKRYK 499 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
No 453
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=43.88 E-value=2.2e+02 Score=24.75 Aligned_cols=109 Identities=24% Similarity=0.349 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 008630 171 ENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEFEKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWG 250 (559)
Q Consensus 171 eEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~ELEkE~~el~kkie~l~ek~eeLq~eieelkekL~~~ 250 (559)
..+..+...|..+...|..++..+..+...... -...+..++.....+......+...+..|.......... .
T Consensus 8 ~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~----~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~---~ 80 (117)
T smart00503 8 EKVEEIRANIQKISQNVAELQKLHEELLTPPDA----DKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRAS---G 80 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccc---C
Confidence 345566666666666666666666665543220 011222222222333333333333333333322211111 1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 251 MDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYIC 293 (559)
Q Consensus 251 e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~ 293 (559)
...-.-...+.+.+ .+++.++..+|..+++.|..-|
T Consensus 81 ~~~~r~~~~q~~~L-------~~~f~~~m~~fq~~Q~~~~~~~ 116 (117)
T smart00503 81 SASDRTRKAQTEKL-------RKKFKEVMNEFQRLQRKYRERE 116 (117)
T ss_pred CHhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHc
Confidence 11122334555556 7777888888888888776433
No 454
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=43.07 E-value=4e+02 Score=27.57 Aligned_cols=7 Identities=0% Similarity=0.240 Sum_probs=3.0
Q ss_pred CCCcccc
Q 008630 298 LTTDKMT 304 (559)
Q Consensus 298 ~~~~~~~ 304 (559)
.+++.++
T Consensus 220 ~~~G~~v 226 (334)
T TIGR00998 220 VQVGQVV 226 (334)
T ss_pred cCCCCEe
Confidence 3444444
No 455
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=42.83 E-value=2.6e+02 Score=32.29 Aligned_cols=15 Identities=7% Similarity=0.295 Sum_probs=8.4
Q ss_pred HHHHHHhhhCCCCcc
Q 008630 288 QYNYICAKFGLTTDK 302 (559)
Q Consensus 288 qi~~L~~k~~~~~~~ 302 (559)
-++.|..++++.+..
T Consensus 263 D~~~L~~~~~~~~~~ 277 (555)
T TIGR03545 263 DLKRLENKYAIKSGD 277 (555)
T ss_pred HHHHHHHHhCCCccc
Confidence 345566666655544
No 456
>PRK00106 hypothetical protein; Provisional
Probab=42.70 E-value=5.9e+02 Score=29.43 Aligned_cols=16 Identities=6% Similarity=0.241 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhhhC
Q 008630 282 YKRLKSQYNYICAKFG 297 (559)
Q Consensus 282 yk~LKSqi~~L~~k~~ 297 (559)
|...+..++..+...|
T Consensus 303 v~k~~~e~~~~i~~~G 318 (535)
T PRK00106 303 VEKNRLEMDNRIREYG 318 (535)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444455444444
No 457
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=42.63 E-value=5.2e+02 Score=28.82 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 150 QLLADEKKEKKCFLTKFEVF-EENVSRLQEELTKKTEEVEEGRKLQE 195 (559)
Q Consensus 150 ~eLee~EkEkeel~ek~e~l-eeEv~eLqekl~q~ekEIselr~~iq 195 (559)
.++.+++.++..+-+++... =++...+++.+-.+...|+.+..+++
T Consensus 324 nEi~nLKqElasmeervaYQsyERaRdIqEalEscqtrisKlEl~qq 370 (455)
T KOG3850|consen 324 NEIANLKQELASMEERVAYQSYERARDIQEALESCQTRISKLELQQQ 370 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444 44555666666666666666555444
No 458
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=42.52 E-value=2.5e+02 Score=24.98 Aligned_cols=9 Identities=22% Similarity=0.386 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 008630 106 HKKIVDELQ 114 (559)
Q Consensus 106 leerL~~Le 114 (559)
++.++..|.
T Consensus 11 l~~~i~~l~ 19 (129)
T cd00890 11 LQQQLEALQ 19 (129)
T ss_pred HHHHHHHHH
Confidence 333333333
No 459
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=42.28 E-value=4e+02 Score=27.32 Aligned_cols=9 Identities=22% Similarity=0.390 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 008630 272 KKKRRDVID 280 (559)
Q Consensus 272 ~rKl~~l~~ 280 (559)
..+..+.++
T Consensus 198 ~er~~dfk~ 206 (234)
T cd07664 198 KERVKDFKT 206 (234)
T ss_pred HHHHHHHHH
Confidence 334444444
No 460
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=41.93 E-value=1.4e+02 Score=24.34 Aligned_cols=9 Identities=0% Similarity=0.294 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q 008630 272 KKKRRDVID 280 (559)
Q Consensus 272 ~rKl~~l~~ 280 (559)
+.+|+..-.
T Consensus 44 N~RlDN~a~ 52 (56)
T PF04728_consen 44 NQRLDNIAQ 52 (56)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhHh
Confidence 555554433
No 461
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=41.92 E-value=3.7e+02 Score=26.87 Aligned_cols=45 Identities=22% Similarity=0.221 Sum_probs=26.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHH
Q 008630 80 CEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEV 124 (559)
Q Consensus 80 keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEI 124 (559)
..|.++...|.+....+-...+..+.++.++..++.....+....
T Consensus 31 q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A 75 (219)
T TIGR02977 31 LIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKA 75 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666666666666666665555544443
No 462
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=41.39 E-value=4.5e+02 Score=28.33 Aligned_cols=77 Identities=21% Similarity=0.255 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q 008630 219 KQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRD------VIDAYKRLKSQYNYI 292 (559)
Q Consensus 219 ~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~------l~~eyk~LKSqi~~L 292 (559)
+..+...+.++++++..++.-.+.....+.+.+.+++.+++++++. -.++++ ++.....||....-|
T Consensus 282 fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~-------G~~msDGaplvkIkqavsKLk~et~~m 354 (384)
T KOG0972|consen 282 FRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQ-------GAKMSDGAPLVKIKQAVSKLKEETQTM 354 (384)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh-------cccccCCchHHHHHHHHHHHHHHHHhh
Confidence 3344455555666666666666666667777777777777777766 444332 233444555555555
Q ss_pred HhhhCCCCcc
Q 008630 293 CAKFGLTTDK 302 (559)
Q Consensus 293 ~~k~~~~~~~ 302 (559)
-=.+|+-+-+
T Consensus 355 nv~igv~ehs 364 (384)
T KOG0972|consen 355 NVQIGVFEHS 364 (384)
T ss_pred hhheehhhHH
Confidence 5555544444
No 463
>PHA02414 hypothetical protein
Probab=41.38 E-value=1.2e+02 Score=27.45 Aligned_cols=46 Identities=20% Similarity=0.027 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 008630 89 LEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENL 134 (559)
Q Consensus 89 L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL 134 (559)
..+++..+.++...+.++.+.+.--.++..-+.=+|+++.+.+..|
T Consensus 31 n~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i~aL 76 (111)
T PHA02414 31 NKELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKISAL 76 (111)
T ss_pred hHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHHHH
Confidence 3344555555555555665555544444444444444444444443
No 464
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=41.35 E-value=3.6e+02 Score=27.96 Aligned_cols=40 Identities=8% Similarity=0.096 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHH
Q 008630 219 KQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLL 258 (559)
Q Consensus 219 ~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~ 258 (559)
+-.+.+.-++++.+..+|.++......++..++.+++.|+
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~ 120 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLR 120 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666666666555555554444444443
No 465
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=41.20 E-value=1.2e+02 Score=32.99 Aligned_cols=84 Identities=12% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008630 173 VSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF---EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGW 249 (559)
Q Consensus 173 v~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL---EkE~~el~kkie~l~ek~eeLq~eieelkekL~~ 249 (559)
|.+++.++.++.==.+.+++...+|.=+.+.+...+..++.+| -.+..++.+.++.+...+.-|+....++++.|..
T Consensus 121 v~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~Q 200 (405)
T KOG2010|consen 121 VSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQ 200 (405)
T ss_pred hHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred chhhhHH
Q 008630 250 GMDSNDK 256 (559)
Q Consensus 250 ~e~eiee 256 (559)
..+-|++
T Consensus 201 Rdeliee 207 (405)
T KOG2010|consen 201 RDELIEE 207 (405)
T ss_pred HHHHHHH
No 466
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=41.14 E-value=7.5e+02 Score=30.18 Aligned_cols=258 Identities=13% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHH---------HHHHHHhHHHHHHHHHHHHHHHHhhHHHH
Q 008630 39 KLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKAC---------EIKKKCDQLEEHEEKTKTLIAELNSHKKI 109 (559)
Q Consensus 39 ~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~k---------eL~~~Qk~L~Ele~kI~~le~e~k~leer 109 (559)
+|..|..+-|.+-..--..|=-|-+---|.....+.|-.-.. .+...+...++++-.++..++.-+.+..+
T Consensus 786 rLE~L~~eRD~v~EqhA~~sFDvQK~QRlh~~FsqFvg~HLavAF~~dPE~~~~~~~~~Rnei~R~l~~~~~~~QQ~R~Q 865 (1480)
T COG3096 786 RLESLHAERDVLSERHATLSFDVQKTQRLHQAFSRFIGSHLAVAFEADPEAEIRQLNSRRNELERALSNHENDNQQQRIQ 865 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q ss_pred HHHHHHH---------------HhhhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 110 VDELQRQ---------------LGAKTEEVAREKELTENLFKKIEKL------SLDISHYKQLLADEKKEKKCFLTKFEV 168 (559)
Q Consensus 110 L~~Leek---------------~~kl~EEIee~kekleeL~~eIe~L------e~eie~~e~eLee~EkEkeel~ek~e~ 168 (559)
++..++. ...+...+++.++++..+..---++ -+.++-+-.-|..-=+..+.+.+.+..
T Consensus 866 ~d~aKe~~~~LnkLiPql~ll~dE~L~dRveE~~E~L~~a~e~~~fI~qhG~tls~LEpia~~LqsDPe~~e~L~~~y~q 945 (1480)
T COG3096 866 FDQAKEGVTALNRLIPQLNLLADESLADRVEEIRERLDEAQEAARFIQQHGNTLSKLEPIASVLQSDPEQFEQLKEDYAQ 945 (1480)
T ss_pred HHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHhhhhHHHHHhCCHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHhhhhHHHHHhHHHH---HHHHHHHHHHHHHHH
Q 008630 169 FEENVSRLQEELTKKTEEV---------------EEGRKLQEQLLQQIDFKSSEITKNKQEF---EKEKQLLLDKVRGLE 230 (559)
Q Consensus 169 leeEv~eLqekl~q~ekEI---------------selr~~iq~LeQeLE~~~~Ei~kle~EL---EkE~~el~kkie~l~ 230 (559)
.......++.++|.+..=+ ++.-..-+.|.+++++.+.+....+.++ ...+.++..-+..++
T Consensus 946 A~~~q~q~~qq~FAL~dv~qRr~HF~Y~ds~~~l~e~sdLnekLr~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~Lk 1025 (1480)
T COG3096 946 AQQMQRQARQQAFALTEVVQRRAHFSYSDSAEMLSENSDLNEKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLK 1025 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhhcc-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008630 231 EKANELKKNFCEKSSKQGWG-----MDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKF 296 (559)
Q Consensus 231 ek~eeLq~eieelkekL~~~-----e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~ 296 (559)
.-+..-..-+.++..++.++ ....+.-+.+-+++-..|-.-..+++.+....-...+..++|.+++
T Consensus 1026 sS~~~K~~~l~El~qEl~d~GV~AD~gAeeRA~~RRDELh~~Lst~RsRr~~~EkqlT~~E~E~~~L~~~~ 1096 (1480)
T COG3096 1026 SSYDTKKELLNELQQELQDIGVRADSGAEERARIRRDELHAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKL 1096 (1480)
T ss_pred hhhhHHHHHHHHHHHHHHHhCCCcCcchHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHH
No 467
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=41.07 E-value=2.2e+02 Score=26.96 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 008630 68 QKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFK 136 (559)
Q Consensus 68 ~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~ 136 (559)
+..|++....+.+.+....+.+..++..|...+.....-.+.|..|+.+...+..++.........+..
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~ 90 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQ 90 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhc
No 468
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=40.95 E-value=3.8e+02 Score=28.86 Aligned_cols=143 Identities=15% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHH
Q 008630 43 QRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTE 122 (559)
Q Consensus 43 l~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~E 122 (559)
++.+...++.-+. --.-|-+....+..+-+++-+--+.....-.+.-.....+..+...-.+++=.+..|++++.++..
T Consensus 165 m~~~~~~i~nll~-~f~~ipe~~~a~~~Ie~ll~~d~~v~~~~~d~~Dg~~~~~~~~~~~~~i~e~e~e~Lke~lqel~~ 243 (307)
T PF15112_consen 165 MRDFQMKIQNLLN-EFRNIPEIVAAGSRIEQLLTSDWAVHIPEEDQRDGCESETDVYLSESQILEIEMELLKEKLQELYL 243 (307)
T ss_pred HHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHhhhhhhcCchhhccchhhhccchhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 123 EVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEG 190 (559)
Q Consensus 123 EIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIsel 190 (559)
.++.....-++..+.++.+..-+-..+.....+..++ .+++.+...+..+...+..+..++..+
T Consensus 244 ~~e~~~~~~ee~~~~l~~~~~fL~~NkDL~~~l~~e~----qkL~~l~~k~~~~~~~v~~~~~~~~ql 307 (307)
T PF15112_consen 244 QAEEQEVLPEEDSKRLEVLKEFLRNNKDLRSNLQEEL----QKLDSLQTKHQKLESDVKELKSQMPQL 307 (307)
T ss_pred HHhhccccchhhhHHHHHHHHHHHhcHHHHHHHHHHH----HHHHHHHHHhcchhhhhhHHHhhccCC
No 469
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=40.73 E-value=3.2e+02 Score=25.72 Aligned_cols=102 Identities=21% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 008630 75 AQSKACEIKKKCDQLEEHEEKT-----KTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDI-SHY 148 (559)
Q Consensus 75 ~~~~~keL~~~Qk~L~Ele~kI-----~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~ei-e~~ 148 (559)
|++.......+...+.+++.++ ..+......+...+..|..........+......+..|......+..+. ...
T Consensus 3 ~~~e~~~~~~~~a~~~e~e~~~~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~ 82 (136)
T PF04871_consen 3 LKSELEEEKQLAAKILELETKLKSQAESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKEA 82 (136)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 149 KQLLADEKKEKKCFLTKFEVFEENVSRL 176 (559)
Q Consensus 149 e~eLee~EkEkeel~ek~e~leeEv~eL 176 (559)
+..++++=-=+..+-+++..|+..+..|
T Consensus 83 q~EldDLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 83 QSELDDLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHc
No 470
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=40.69 E-value=35 Score=33.37 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 226 VRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQY 289 (559)
Q Consensus 226 ie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi 289 (559)
+++++.+|+...++---|+.+| ++.+.|+..+..+ +..++||+.|. .++..+
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRL-------kDE~RDLKqEl-~V~ek~ 53 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRL-------KDELRDLKQEL-IVQEKL 53 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH----------------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHH-------HHHHHHHHHHH-HHHHHh
No 471
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=40.25 E-value=3.3e+02 Score=25.86 Aligned_cols=133 Identities=20% Similarity=0.153 Sum_probs=0.0
Q ss_pred hHHHHHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 008630 34 GQLLVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDEL 113 (559)
Q Consensus 34 ~~~~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~L 113 (559)
+++.-++.-|=.+|.+|||--+.-++++.+++.|...|-+-+.++..+-.....-|+.-.+..+.+.-.-+-.+......
T Consensus 2 gsLeP~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqeke~eaqrq 81 (134)
T PF15233_consen 2 GSLEPQIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQLHCQEKESEAQRQ 81 (134)
T ss_pred CCccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 114 QRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKL 193 (559)
Q Consensus 114 eek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~ 193 (559)
..-...-. ..-+++..++.+++++..+=+.... ..+..+|..+...
T Consensus 82 ~~~~~eck-----------------------------~R~~fe~qLE~lm~qHKdLwefh~~-----erLa~EI~~l~~s 127 (134)
T PF15233_consen 82 QTLLQECK-----------------------------LRLDFEEQLEDLMGQHKDLWEFHMP-----ERLAREICALESS 127 (134)
T ss_pred hhhhHhHH-----------------------------HHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHHHHHHHhh
Q ss_pred HHHHHHH
Q 008630 194 QEQLLQQ 200 (559)
Q Consensus 194 iq~LeQe 200 (559)
.+.|..+
T Consensus 128 KEQLL~E 134 (134)
T PF15233_consen 128 KEQLLKE 134 (134)
T ss_pred HHHHhcC
No 472
>PLN02678 seryl-tRNA synthetase
Probab=40.20 E-value=1.7e+02 Score=32.91 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 108 KIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEV 187 (559)
Q Consensus 108 erL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEI 187 (559)
.++-.|.++.+++..+++.++...+.+.++| +.+.......+++.++...+..++..++.++..++.++..+-..|
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I----~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~i 108 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEV----AKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTI 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 473
>PF15456 Uds1: Up-regulated During Septation
Probab=39.71 E-value=3.2e+02 Score=25.47 Aligned_cols=80 Identities=11% Similarity=0.157 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 86 CDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVARE-----------KELTENLFKKIEKLSLDISHYKQLLAD 154 (559)
Q Consensus 86 Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~-----------kekleeL~~eIe~Le~eie~~e~eLee 154 (559)
..++.++..++..+.+.+.++..++. |+.+.+.+..-+... ..-.......+......++++..+|..
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~ 99 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWK 99 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 008630 155 EKKEKKCFLTKF 166 (559)
Q Consensus 155 ~EkEkeel~ek~ 166 (559)
++.-..+++.++
T Consensus 100 le~R~~~~~~rL 111 (124)
T PF15456_consen 100 LENRLAEVRQRL 111 (124)
T ss_pred HHHHHHHHHHHH
No 474
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=39.60 E-value=6.2e+02 Score=28.79 Aligned_cols=234 Identities=19% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHhHhhhhHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHH-----------
Q 008630 43 QRCEINELKQELEFKSKEVEGVKEMQKGL---IQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKK----------- 108 (559)
Q Consensus 43 l~~~~~~l~~~~~~k~~~v~~~~el~~~l---~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~lee----------- 108 (559)
|..+|+- |+|.+--+.+.+. +.-=+++..+|++...+|.-+...........-+|-.
T Consensus 198 l~~~~E~---------k~~qeel~~~~~~~~d~~EkE~Ll~EIq~Lk~qL~~~~~ss~s~~~~~~sll~~s~~~~~~~~~ 268 (488)
T PF06548_consen 198 LKEKIEL---------KRVQEELEEYRNFSFDMGEKEVLLEEIQDLKSQLQYYTDSSMSTDRLRSSLLQRSYQLRPSAIP 268 (488)
T ss_pred HhhHhHH---------HHHHHHHHhccccccCcchHHHHHHHHHHHHHHHHhccccccccccccccHHhhhhccCCCCCc
Q ss_pred ------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Q 008630 109 ------IVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVF-------EENVSR 175 (559)
Q Consensus 109 ------rL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~l-------eeEv~e 175 (559)
.-..|+....+|++=-.+=..+.++|--.|+......+..+.+|..-++--+++..-+.-. -+.+..
T Consensus 269 ~~~~~~~~~~le~er~~wtE~ES~WIsLteeLR~dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYad 348 (488)
T PF06548_consen 269 ESGDENAEEELEQERQRWTEAESKWISLTEELRVDLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYAD 348 (488)
T ss_pred ccCCCchhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------HhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 176 LQEELTKKTEEVEEGRKLQEQLLQQ-------------IDFKSSEITKNKQEFEKEKQLLLDKVRGLEEKANELKKNFCE 242 (559)
Q Consensus 176 Lqekl~q~ekEIselr~~iq~LeQe-------------LE~~~~Ei~kle~ELEkE~~el~kkie~l~ek~eeLq~eiee 242 (559)
|+++..++-..=-.+..-|...+.. ++.+..++..++.+.|++-..+......|+..+...-...-.
T Consensus 349 LqEk~~~Ll~~Hr~i~egI~dVKkaAakAg~kG~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqA 428 (488)
T PF06548_consen 349 LQEKHNDLLARHRRIMEGIEDVKKAAAKAGVKGAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQA 428 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHH
Q ss_pred HhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008630 243 KSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKF 296 (559)
Q Consensus 243 lkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~ 296 (559)
. .+|+-+|.+..--....+.+-.....+-..++.+|+.|-+|.
T Consensus 429 a-----------gEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh 471 (488)
T PF06548_consen 429 A-----------GELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRKH 471 (488)
T ss_pred H-----------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 475
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=39.40 E-value=2.7e+02 Score=27.27 Aligned_cols=77 Identities=14% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008630 219 KQLLLDKVRGLEEK---ANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAK 295 (559)
Q Consensus 219 ~~el~kkie~l~ek---~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k 295 (559)
+..+-..++.+... ...+..+...++.++..+...++.|..++..+ ..++..+...|..|-+-++--++-
T Consensus 82 l~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L-------~~~~~~~~eDY~~L~~Im~RARkl 154 (161)
T TIGR02894 82 LQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKL-------RQRLSTIEEDYQTLIDIMDRARKL 154 (161)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hCCCCcc
Q 008630 296 FGLTTDK 302 (559)
Q Consensus 296 ~~~~~~~ 302 (559)
+-+.+++
T Consensus 155 ~~~~~~~ 161 (161)
T TIGR02894 155 AVVEDDE 161 (161)
T ss_pred HhhcccC
No 476
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=39.31 E-value=4.3e+02 Score=26.90 Aligned_cols=119 Identities=11% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-
Q 008630 65 KEMQKGLIQLAQSKACEIKKKCDQLEEHEE--KTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL- 141 (559)
Q Consensus 65 ~el~~~l~~~~~~~~keL~~~Qk~L~Ele~--kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L- 141 (559)
+.+..+|-..+..+...|....+.||++.+ .|..+...+..++..+.............-..........+.++-.|
T Consensus 1 ~~~~~~~~~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LL 80 (207)
T PF05546_consen 1 KQLSKKLSFYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELL 80 (207)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 142 ----------SLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKK 183 (559)
Q Consensus 142 ----------e~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ 183 (559)
-..+-.+-..=-..+.+..+....+...+..+..+...+.+.
T Consensus 81 qRK~sWs~~DleRFT~Lyr~dH~~e~~e~~ak~~l~~aE~~~e~~~~~L~~~ 132 (207)
T PF05546_consen 81 QRKHSWSPADLERFTELYRNDHENEQAEEEAKEALEEAEEKVEEAFDDLMRA 132 (207)
T ss_pred hcccCCChHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 477
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=39.21 E-value=3e+02 Score=33.03 Aligned_cols=94 Identities=23% Similarity=0.234 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHH---HHHHHHHH
Q 008630 59 KEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVARE---KELTENLF 135 (559)
Q Consensus 59 ~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~---kekleeL~ 135 (559)
.+|-+-..+..+|.+.+.....++. +.+++.+|+....+.-...++-=+|.++...+..||-.. ...++.+.
T Consensus 182 Q~iLe~~~v~~Rlek~l~~l~~ei~-----~~~~ek~I~~kVk~~meK~QREyyL~EQlKaIqkELG~~~d~~~e~~~~~ 256 (782)
T COG0466 182 QEILETLDVKERLEKLLDLLEKEID-----LLQLEKRIRKKVKEQMEKSQREYYLREQLKAIQKELGEDDDDKDEVEELR 256 (782)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhHHHHHH
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHH
Q 008630 136 KKIEKL---SLDISHYKQLLADEKK 157 (559)
Q Consensus 136 ~eIe~L---e~eie~~e~eLee~Ek 157 (559)
.+|+.. +...+....+|..++.
T Consensus 257 ~kie~~~~p~evk~k~~~El~kL~~ 281 (782)
T COG0466 257 EKIEKLKLPKEAKEKAEKELKKLET 281 (782)
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHhc
No 478
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=39.05 E-value=83 Score=35.59 Aligned_cols=54 Identities=7% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 237 KKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYN 290 (559)
Q Consensus 237 q~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~ 290 (559)
+..+.+-+.+..+++++++.++++++...+.+..-+++++++..+...|+.+++
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
No 479
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=38.96 E-value=3.3e+02 Score=25.50 Aligned_cols=94 Identities=19% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH-
Q 008630 97 KTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLAD------EKKEKKCFLTKFEVF- 169 (559)
Q Consensus 97 ~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee------~EkEkeel~ek~e~l- 169 (559)
..+++.++.++.+...|..+......+.....+.+..-..+...+...++..-..|.. +.++..++..+++.+
T Consensus 23 ~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~ 102 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLL 102 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHH
Q 008630 170 ---EENVSRLQEELTKKTEEVEEGR 191 (559)
Q Consensus 170 ---eeEv~eLqekl~q~ekEIselr 191 (559)
.+++...++.|...+ .|..+|
T Consensus 103 ~~L~k~I~~~e~iI~~fe-~i~~~~ 126 (126)
T PF09403_consen 103 NKLDKEIAEQEQIIDNFE-KIQSLR 126 (126)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhcC
No 480
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=38.93 E-value=3.1e+02 Score=25.18 Aligned_cols=89 Identities=16% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH------------------HHHHHHHHHHHHHHHHHHH
Q 008630 173 VSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF------------------EKEKQLLLDKVRGLEEKAN 234 (559)
Q Consensus 173 v~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL------------------EkE~~el~kkie~l~ek~e 234 (559)
+.+||.+-.....+|.-+..++...........--...+..=. ......++.+....++.++
T Consensus 5 f~~lQ~K~~dtqq~~~~~~vQi~~~nr~kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~dk~a~~s~leak~k~see~Ie 84 (114)
T KOG3501|consen 5 FSQLQEKAVDTQQQLRTIMVQIAAKNRAKKISELAKKELEDVGDEKAVYTSVGRMFMLSDKAAVRSHLEAKMKSSEEKIE 84 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHHHH
Q ss_pred HHHHHHHHHhhhhhcchhhhHHHHHHH
Q 008630 235 ELKKNFCEKSSKQGWGMDSNDKLLQEI 261 (559)
Q Consensus 235 eLq~eieelkekL~~~e~eieeL~eqL 261 (559)
.|+..-.+++..+.+.+..++++.+..
T Consensus 85 aLqkkK~YlEk~v~eaE~nLrellqs~ 111 (114)
T KOG3501|consen 85 ALQKKKTYLEKTVSEAEQNLRELLQSR 111 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
No 481
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=38.63 E-value=1.7e+02 Score=24.20 Aligned_cols=51 Identities=18% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 008630 89 LEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIE 139 (559)
Q Consensus 89 L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe 139 (559)
+.++.+++...+.+++.++++++.|+.........+......+..+.....
T Consensus 1 ~~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 1 LQDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=38.55 E-value=1.4e+02 Score=24.33 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 120 KTEEVAREKELTENLFKKIEKL--------------SLDISHYKQLLADEKKEKKCFLTKFEVF 169 (559)
Q Consensus 120 l~EEIee~kekleeL~~eIe~L--------------e~eie~~e~eLee~EkEkeel~ek~e~l 169 (559)
+..|+.++...+..+...|..+ ...++..+..|++++.++..+...+..+
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 483
>PF15294 Leu_zip: Leucine zipper
Probab=38.43 E-value=5.1e+02 Score=27.50 Aligned_cols=228 Identities=14% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHhHHHhHHHHHHH-HHHHhHhhhhHHHHHHHHHHHHHH----------------HHHHHHHHHhHHHHHHHHHHHHHH
Q 008630 39 KLESQRCEINELKQE-LEFKSKEVEGVKEMQKGLIQLAQS----------------KACEIKKKCDQLEEHEEKTKTLIA 101 (559)
Q Consensus 39 ~~~sl~~~~~~l~~~-~~~k~~~v~~~~el~~~l~~~~~~----------------~~keL~~~Qk~L~Ele~kI~~le~ 101 (559)
+|+.-..-+..|+.- |.+-+.-+++..++-.+|-..|.+ ..+.++..++.-..+..-|..+++
T Consensus 9 ~Lk~Vds~F~Dlk~srL~e~t~T~~EV~~~ldgL~~~v~~~vesEL~N~~htn~lllrql~~qAek~~lkl~~diselEn 88 (278)
T PF15294_consen 9 HLKEVDSCFQDLKSSRLREDTYTSDEVTEMLDGLQVVVKSEVESELINTSHTNVLLLRQLFSQAEKWYLKLQTDISELEN 88 (278)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHhcccHHHHHH
Q ss_pred HHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH----------HHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 008630 102 ELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEK----------LSLDISH-----YKQLLADEKKEKKCFLTKF 166 (559)
Q Consensus 102 e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~----------Le~eie~-----~e~eLee~EkEkeel~ek~ 166 (559)
.++-+-....+...-.+.. |....+. +..++..+..+.+.+++++
T Consensus 89 --------------------~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl 148 (278)
T PF15294_consen 89 --------------------RELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERL 148 (278)
T ss_pred --------------------HHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 167 EVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQ---------QIDFKSSEITKNKQEFEKEKQLLLDKVRGLEEKANELK 237 (559)
Q Consensus 167 e~leeEv~eLqekl~q~ekEIselr~~iq~LeQ---------eLE~~~~Ei~kle~ELEkE~~el~kkie~l~ek~eeLq 237 (559)
..++......-+.-..++..+.+++..+..... .+-.++.-++..+.++++-..........+.+.+..-.
T Consensus 149 ~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~~~d~~~~~k~L~e~L~~~K 228 (278)
T PF15294_consen 149 KSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKALQDKESQQKALEETLQSCK 228 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008630 238 KNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFG 297 (559)
Q Consensus 238 ~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~ 297 (559)
.++-..+.++...+.+++..-++-..- +..+.-...-..||..|+++++
T Consensus 229 helL~~QeqL~~aekeLekKfqqT~ay-----------~NMk~~ltkKn~QiKeLRkrl~ 277 (278)
T PF15294_consen 229 HELLRVQEQLSLAEKELEKKFQQTAAY-----------RNMKEILTKKNEQIKELRKRLA 277 (278)
T ss_pred HHHHhcchhhhcchhhHHHHhCccHHH-----------HHhHHHHHhccHHHHHHHHHhc
No 484
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=38.43 E-value=2.6e+02 Score=25.40 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 008630 70 GLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELT 131 (559)
Q Consensus 70 ~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekl 131 (559)
+|+++.|.-..=|-+.|..|... +..++..++.+...+..|.....+..+++...+...
T Consensus 59 klfrLaQl~ieYLl~~q~~L~~~---~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 59 KLFRLAQLSIEYLLHCQEYLSSQ---LEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 485
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=38.29 E-value=4.1e+02 Score=26.29 Aligned_cols=142 Identities=18% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------------------HHHHHHHHHHhhHHHHHHHHH
Q 008630 55 EFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHE--------------------EKTKTLIAELNSHKKIVDELQ 114 (559)
Q Consensus 55 ~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele--------------------~kI~~le~e~k~leerL~~Le 114 (559)
+.|..-.-++---|..|++.+|.|-..|......|.... ..+..+...+.--+.+-..|.
T Consensus 1 rrrl~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~ 80 (182)
T PF15035_consen 1 RRRLDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELA 80 (182)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHH
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 008630 115 RQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVF----EENVSRLQEELTKKTEEVEEG 190 (559)
Q Consensus 115 ek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~l----eeEv~eLqekl~q~ekEIsel 190 (559)
+-..-+-+.++........|...|..+...+..+..+|..-+.....-...+..+ ...+-.|=+++..+...++++
T Consensus 81 qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~el 160 (182)
T PF15035_consen 81 QVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRRQFAEL 160 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 008630 191 RKLQEQ 196 (559)
Q Consensus 191 r~~iq~ 196 (559)
+..-++
T Consensus 161 r~~Ter 166 (182)
T PF15035_consen 161 RTATER 166 (182)
T ss_pred HHHHHh
No 486
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=38.20 E-value=3.4e+02 Score=25.40 Aligned_cols=64 Identities=14% Similarity=-0.075 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 103 LNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKF 166 (559)
Q Consensus 103 ~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~ 166 (559)
+++|+-+=..++.....+.-|-++.+.+|..|+.+....+....++..-+.++|.++.+.+.++
T Consensus 6 l~fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~ 69 (134)
T PF08232_consen 6 LHFLQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKY 69 (134)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 487
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=38.00 E-value=26 Score=28.85 Aligned_cols=37 Identities=32% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHhHHHhHHHHHHH----HHHHhHhhhhH----HHHHHHHH
Q 008630 36 LLVKLESQRCEINELKQE----LEFKSKEVEGV----KEMQKGLI 72 (559)
Q Consensus 36 ~~~~~~sl~~~~~~l~~~----~~~k~~~v~~~----~el~~~l~ 72 (559)
+..+|.|+++.|.+||++ |..-..||..- ++|++.|+
T Consensus 1 l~~qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~~kL~ 45 (60)
T PF14916_consen 1 LEQQVQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNKDLTFKLI 45 (60)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeee
No 488
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=37.96 E-value=2.8e+02 Score=24.42 Aligned_cols=85 Identities=18% Similarity=0.167 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 120 KTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVF---EENVSRLQEELTKKTEEVEEGRKLQEQ 196 (559)
Q Consensus 120 l~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~l---eeEv~eLqekl~q~ekEIselr~~iq~ 196 (559)
+..+++-.....+-|.+-.......+..+.....++....+.+..+...+ -..+..+..++..++.=+..++.....
T Consensus 12 v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~ 91 (99)
T PF10046_consen 12 VESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKE 91 (99)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhh
Q 008630 197 LLQQIDFK 204 (559)
Q Consensus 197 LeQeLE~~ 204 (559)
|+..+..+
T Consensus 92 LE~k~k~l 99 (99)
T PF10046_consen 92 LESKFKKL 99 (99)
T ss_pred HHHHhhcC
No 489
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=37.96 E-value=5.6e+02 Score=27.78 Aligned_cols=148 Identities=19% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhH--------------HHH-HHHHHHH----
Q 008630 162 FLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNK--------------QEF-EKEKQLL---- 222 (559)
Q Consensus 162 l~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle--------------~EL-EkE~~el---- 222 (559)
++.-.....-.+............++.....++++|.=+..-+..+|.+|. .|. ..--..+
T Consensus 3 Lk~~nR~~~~~~~~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~~C~~F~s~~~~i~Lv~~eEF~~~ap~~~~~~~ 82 (355)
T PF09766_consen 3 LKQLNRAAQFRIKKAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIKKCLDFKSKYEDIELVPVEEFYAKAPEEISDPE 82 (355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCCCcCccHHHHHHhChhhccccc
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 008630 223 ---LDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFGLT 299 (559)
Q Consensus 223 ---~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~~~ 299 (559)
....+-+-.+++-=-.+-..+..++..+......+...+..+ +..++.+....+.+..-..-+-..+|+.
T Consensus 83 ~~~~~~H~lml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k-------~~~L~~l~~~L~~l~~a~~plq~~l~~~ 155 (355)
T PF09766_consen 83 LTEDDEHQLMLARLEFELEQRKRLEEQLKELEQRKKKLQQENKKK-------KKFLDSLPPQLKSLKKAAKPLQEYLGLP 155 (355)
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHhCCC
Q ss_pred CccccccccccccccccccCCCC
Q 008630 300 TDKMTSEHKVEEESDSLTHRRNP 322 (559)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~ 322 (559)
......++.+.... |.|
T Consensus 156 ~~~~~~~~~~a~~L------P~P 172 (355)
T PF09766_consen 156 HTKKRKQHELAELL------PPP 172 (355)
T ss_pred ccchhhhHHHHHhC------Ccc
No 490
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=37.63 E-value=4.7e+02 Score=26.87 Aligned_cols=203 Identities=12% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Q 008630 73 QLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL-----SLDISH 147 (559)
Q Consensus 73 ~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L-----e~eie~ 147 (559)
+.+-+.+-.+..+...+++.-.--......+..|+.+|+.|-.....+...-..+-.-+.++...+..| ...+..
T Consensus 1 ~~~~~~~d~~~~~~~k~~E~D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~~Ls~ 80 (234)
T cd07665 1 KMFNKATDAVSKMTIKMNESDVWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSR 80 (234)
T ss_pred ChhhHHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH-HHH
Q 008630 148 YKQLLADEKKEKKCFLTKFEVF--------EENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF-EKE 218 (559)
Q Consensus 148 ~e~eLee~EkEkeel~ek~e~l--------eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL-EkE 218 (559)
.=..|.+.+..+.++..+.... =.++.++-..+-.+=.+=...-...+.+++.+........++..-. ...
T Consensus 81 als~laev~~~i~~~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK 160 (234)
T cd07665 81 ALSQLAEVEEKIEQLHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDK 160 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 008630 219 KQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVID-AYKRLKSQYNY 291 (559)
Q Consensus 219 ~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~-eyk~LKSqi~~ 291 (559)
+.++...+.+.+.++..++...+.+. ..++.++..- +..|..+.++ -..=++|++..
T Consensus 161 ~~~a~~Ev~e~e~k~~~a~~~fe~is----------~~ik~El~rF------e~er~~Dfk~~v~~fles~ie~ 218 (234)
T cd07665 161 LQQAKDEIAEWESRVTQYERDFERIS----------ATVRKEVIRF------EKEKSKDFKNHIIKYLETLLHS 218 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
No 491
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=37.41 E-value=2.7e+02 Score=24.02 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 008630 66 EMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTEN 133 (559)
Q Consensus 66 el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~keklee 133 (559)
||=..+-+-+...++++......-.+++.++..-.+++....+.+-.|+..+.++...-+....++..
T Consensus 4 elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~ 71 (79)
T PF08581_consen 4 ELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRR 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=37.39 E-value=4.4e+02 Score=26.47 Aligned_cols=106 Identities=17% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHH
Q 008630 152 LADEKKEKKCFLTKFEVF------EENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEFEKEKQLLLDK 225 (559)
Q Consensus 152 Lee~EkEkeel~ek~e~l------eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~ELEkE~~el~kk 225 (559)
.+.+++.+..+...+..+ -.........|+.+.+.|...|..+.+.-. .=
T Consensus 17 ~e~lk~~v~~~~~~Y~~~vvTee~ik~aKk~rA~LNKl~k~id~~RK~ikk~~~------------------------~P 72 (215)
T PF07083_consen 17 FEELKAEVDEAVEKYKGYVVTEENIKDAKKDRAELNKLKKAIDDKRKEIKKEYS------------------------KP 72 (215)
T ss_pred HHHHHHHHHHHHHHhCCcccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------------ch
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 008630 226 VRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFGLTT 300 (559)
Q Consensus 226 ie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~~~~ 300 (559)
+.++...+..+...+......|...-..++ .+++..+.. .++..+..+|...|+..
T Consensus 73 ~~~Fe~~~K~l~~~i~~~~~~I~~~ik~~E----------------e~~k~~k~~---~i~~~~~~~~~~~~v~~ 128 (215)
T PF07083_consen 73 IKEFEAKIKELIAPIDEASDKIDEQIKEFE----------------EKEKEEKRE---KIKEYFEEMAEEYGVDP 128 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHH---HHHHHHHHHHHHcCCCh
No 493
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=37.35 E-value=4e+02 Score=29.53 Aligned_cols=96 Identities=19% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 102 ELNSHKKIVDELQRQLGAK-----TEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRL 176 (559)
Q Consensus 102 e~k~leerL~~Leek~~kl-----~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~eL 176 (559)
+++.+.++.....+...+. -++|-.+-.....+..+++.+..+...+..++....+.. +..+.+.++...|
T Consensus 3 D~k~ir~n~~~v~~~l~~R~~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~----~~~~~l~~~~~~l 78 (425)
T PRK05431 3 DIKLIRENPEAVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKG----EDAEALIAEVKEL 78 (425)
T ss_pred CHHHHHhCHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CcHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 177 QEELTKKTEEVEEGRKLQEQLLQQI 201 (559)
Q Consensus 177 qekl~q~ekEIselr~~iq~LeQeL 201 (559)
.+++..+++++..+...+..+...|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 79 KEEIKALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
No 494
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=37.20 E-value=79 Score=25.66 Aligned_cols=52 Identities=17% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 232 KANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYN 290 (559)
Q Consensus 232 k~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~ 290 (559)
+++++..++..+...+...+.+++.++..++.. ..-+.++..-|...-.+|+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i-------~envk~ll~lYE~Vs~~iN 52 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKI-------EENVKDLLSLYEVVSNQIN 52 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHccCC
No 495
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=37.13 E-value=61 Score=31.64 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 008630 237 KKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFGLTT 300 (559)
Q Consensus 237 q~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~~~~ 300 (559)
.++.++++.+|..++++|.-|++=|..+ ......|.+|+|+|+
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aK---------------------er~~~eLKrkLGit~ 70 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAK---------------------ERHCAELKRKLGITP 70 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHhHHHHHHHHCCch
No 496
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=37.04 E-value=7.1e+02 Score=28.75 Aligned_cols=248 Identities=15% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHH
Q 008630 43 QRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTE 122 (559)
Q Consensus 43 l~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~E 122 (559)
|+++-..|+..+.+..--+-+..++ +++-++.-...+......+.+.+..+-.....-+..=+++=..+.+.+...+
T Consensus 227 lE~rW~~lq~l~Ee~l~al~gq~ev---~~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v~~~q~sL~kvl~aE~kaR~~k~ 303 (531)
T PF15450_consen 227 LESRWQKLQELTEERLRALQGQQEV---GLGGIQSEESKLLEQCRKLDEAVAQLTKFVQQNQKSLNKVLNAEQKARDAKE 303 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhh---hhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 123 EVAREKELTENLFKKIEKL-SLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQI 201 (559)
Q Consensus 123 EIee~kekleeL~~eIe~L-e~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeL 201 (559)
.+...+ +..|...+-.. +..-....-...+..-.++-+.+.-..+..-+..+-+.+..+...|.-+...++--++.+
T Consensus 304 ~~e~sk--~eeL~~~L~~~lea~q~agkla~Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL 381 (531)
T PF15450_consen 304 KLEESK--AEELATKLQENLEAMQLAGKLAQQETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTL 381 (531)
T ss_pred HHHHhh--HHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q ss_pred hhhhHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 008630 202 DFKSSEITKNKQEF-EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQK-TAELMAEKKKRRDVI 279 (559)
Q Consensus 202 E~~~~Ei~kle~EL-EkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k-~~el~~e~rKl~~l~ 279 (559)
+..-.+....-..- ..-...+-.=..++...+.+++..++.+-.+|..+...+.-.+.+++.+ |.|-.+-.+.+.+++
T Consensus 382 ~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vR 461 (531)
T PF15450_consen 382 NLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGAVR 461 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhh
Q 008630 280 DAYKRLKSQYNYICAK 295 (559)
Q Consensus 280 ~eyk~LKSqi~~L~~k 295 (559)
.++..+=|.+-++...
T Consensus 462 qELa~lLssvQ~~~e~ 477 (531)
T PF15450_consen 462 QELATLLSSVQLLKED 477 (531)
T ss_pred HHHHHHHHHHHHhcCC
No 497
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=37.03 E-value=4.7e+02 Score=26.65 Aligned_cols=116 Identities=10% Similarity=0.146 Sum_probs=0.0
Q ss_pred HhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 008630 41 ESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQ--LEEHEEKTKTLIAELNSHKKIVDELQRQLG 118 (559)
Q Consensus 41 ~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~--L~Ele~kI~~le~e~k~leerL~~Leek~~ 118 (559)
+.+...++.|+ ..|-..++.|.+.+.. +..+...|...+..+.-...+++.+...+.
T Consensus 5 ~~~~~~~d~lq---------------------~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~ 63 (207)
T PF05546_consen 5 KKLSFYMDSLQ---------------------ETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYD 63 (207)
T ss_pred HHHHHHHHHHH---------------------HHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHH--------HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 008630 119 AKTEEVAREKELTENLFKK--------IEKL----------SLDISHYKQLLADEKKEKKCFLTKFEVF-EENVSRLQ 177 (559)
Q Consensus 119 kl~EEIee~kekleeL~~e--------Ie~L----------e~eie~~e~eLee~EkEkeel~ek~e~l-eeEv~eLq 177 (559)
.+....+......+.|..+ ++++ +......+..+.+.|..++.+-..+... ..++.+-|
T Consensus 64 ~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~Lyr~dH~~e~~e~~ak~~l~~aE~~~e~~~~~L~~~Il~RYHEEQ 141 (207)
T PF05546_consen 64 DAIQQRSSSQREVNELLQRKHSWSPADLERFTELYRNDHENEQAEEEAKEALEEAEEKVEEAFDDLMRAILTRYHEEQ 141 (207)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=37.00 E-value=4.5e+02 Score=26.43 Aligned_cols=112 Identities=22% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHhhhHHHHHHHhHHHhHHHHHHHHHHHhHhhhhH----HHHHHHHHHHHHHHHHH
Q 008630 6 LQKQQAVEENKTLKFDKAKLLQEQEEKTGQLLVKLESQRCEINELKQELEFKSKEVEGV----KEMQKGLIQLAQSKACE 81 (559)
Q Consensus 6 ~~~~~~~~e~~~l~~~~~~l~~~~e~~~~~~~~~~~sl~~~~~~l~~~~~~k~~~v~~~----~el~~~l~~~~~~~~ke 81 (559)
+.+..+.-+-..+...-.+|| ..-+.+.-..-...|+.-+..|++++...-++|++. +-.|...-..|..+...
T Consensus 106 l~na~a~lehq~~R~~NLeLl--~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~ 183 (221)
T PF05700_consen 106 LDNAYAQLEHQRLRLENLELL--SKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQR 183 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 008630 82 IKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGA 119 (559)
Q Consensus 82 L~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~k 119 (559)
..+.-....+++..+..++.++..+..+...++.+...
T Consensus 184 W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~~~~~ 221 (221)
T PF05700_consen 184 WKELVSKNLEIEVACEELEQEIEQLKRKAAELKENQQQ 221 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
No 499
>PLN02320 seryl-tRNA synthetase
Probab=36.78 E-value=2.8e+02 Score=31.74 Aligned_cols=80 Identities=13% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008630 217 KEKQLLLDKVRGLEEKANELKKNFCEKSSKQG--WGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICA 294 (559)
Q Consensus 217 kE~~el~kkie~l~ek~eeLq~eieelkekL~--~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~ 294 (559)
.++-.+-.+...+..+++.|+.+.+.+..++. ......+++..+...+ +.++.++..++..++..+..++-
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~l-------k~~i~~le~~~~~~~~~l~~~~l 165 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNL-------KEGLVTLEEDLVKLTDELQLEAQ 165 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhCCCCccccccc
Q 008630 295 KFGLTTDKMTSEH 307 (559)
Q Consensus 295 k~~~~~~~~~~~~ 307 (559)
.+. |+++++
T Consensus 166 ~iP----N~~h~~ 174 (502)
T PLN02320 166 SIP----NMTHPD 174 (502)
T ss_pred hCC----CCCCcc
No 500
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=36.33 E-value=12 Score=42.47 Aligned_cols=139 Identities=12% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 70 GLIQLAQSKACEIKKKCDQLEEHEEKT--KTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISH 147 (559)
Q Consensus 70 ~l~~~~~~~~keL~~~Qk~L~Ele~kI--~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~ 147 (559)
+|++.|.---++|.............. ........+-...|..|...+..|..=..=+=..+..+..-|+.|..+|.-
T Consensus 395 ~Lv~~iletkk~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~lr~~iQ~l~~s~~PLgk~~d~iqEDid~M~~El~~ 474 (539)
T PF10243_consen 395 GLVQKILETKKELEKSANSEEKEEKEQSLAASKKERESVEKEIEKLRESIQTLCRSANPLGKLMDYIQEDIDSMQKELEM 474 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhcccccccccccccchhhhccchhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 008630 148 YKQLLADEKKEKKCFLTKFEVF----EENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEI 208 (559)
Q Consensus 148 ~e~eLee~EkEkeel~ek~e~l----eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei 208 (559)
|..+-..+..++.+.+...+.. ..++.+|+..|......|...+-+|-.+...|..+-..|
T Consensus 475 W~~e~~~~~~~l~~e~~~t~~~~~pl~~~L~ele~~I~~~~~~i~~~ka~Il~Ne~~i~~~l~~i 539 (539)
T PF10243_consen 475 WRSEYRQHAEALQEEQSITDEALEPLKAQLAELEQQIKDQQDKICAVKANILKNEEKIQKMLRMI 539 (539)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC
Done!