Query 008630
Match_columns 559
No_of_seqs 149 out of 181
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 08:02:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008630.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008630hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 99.4 7.7E-09 2.6E-13 98.4 40.9 257 33-296 15-281 (284)
2 1c1g_A Tropomyosin; contractIl 99.4 5.9E-08 2E-12 92.3 42.0 41 224-264 223-263 (284)
3 1i84_S Smooth muscle myosin he 98.8 6.6E-09 2.3E-13 123.1 11.2 8 283-290 1119-1126(1184)
4 3na7_A HP0958; flagellar bioge 98.1 0.00079 2.7E-08 67.0 24.4 14 284-297 176-189 (256)
5 3na7_A HP0958; flagellar bioge 98.0 0.0015 5.3E-08 64.9 23.7 13 277-289 176-188 (256)
6 3o0z_A RHO-associated protein 97.6 0.022 7.4E-07 53.8 22.3 134 37-191 5-138 (168)
7 2efr_A General control protein 97.5 0.039 1.3E-06 51.5 23.7 123 78-200 26-148 (155)
8 2v71_A Nuclear distribution pr 97.5 0.02 6.7E-07 55.1 21.1 103 134-247 47-153 (189)
9 2v71_A Nuclear distribution pr 97.4 0.043 1.5E-06 52.8 22.8 106 81-189 25-134 (189)
10 3vkg_A Dynein heavy chain, cyt 97.4 0.051 1.7E-06 70.5 29.8 80 21-100 1910-1989(3245)
11 3vkg_A Dynein heavy chain, cyt 97.2 0.096 3.3E-06 68.0 29.3 40 74-113 1907-1946(3245)
12 2dfs_A Myosin-5A; myosin-V, in 96.9 0.025 8.5E-07 66.9 19.3 17 97-113 924-940 (1080)
13 3o0z_A RHO-associated protein 96.9 0.16 5.6E-06 47.9 20.9 99 100-198 5-103 (168)
14 2efr_A General control protein 96.5 0.52 1.8E-05 43.9 23.2 15 272-286 139-153 (155)
15 3oja_B Anopheles plasmodium-re 96.5 0.026 8.9E-07 61.2 14.0 41 170-210 536-576 (597)
16 3oja_B Anopheles plasmodium-re 96.5 0.028 9.5E-07 61.0 14.2 121 173-300 465-585 (597)
17 3u1c_A Tropomyosin alpha-1 cha 95.1 0.79 2.7E-05 39.6 14.7 72 144-215 3-74 (101)
18 2jee_A YIIU; FTSZ, septum, coi 94.8 0.26 8.9E-06 41.3 10.5 72 219-297 8-79 (81)
19 2fxo_A Myosin heavy chain, car 94.8 2.1 7.1E-05 38.3 18.7 28 170-197 96-123 (129)
20 3u1c_A Tropomyosin alpha-1 cha 94.8 1.4 4.8E-05 38.0 15.4 73 104-183 26-98 (101)
21 2jee_A YIIU; FTSZ, septum, coi 94.6 0.43 1.5E-05 40.0 11.1 67 88-154 7-73 (81)
22 3u59_A Tropomyosin beta chain; 94.5 1.6 5.3E-05 37.5 15.0 71 145-215 4-74 (101)
23 3tnu_B Keratin, type II cytosk 94.4 0.6 2.1E-05 41.7 12.6 37 176-212 80-116 (129)
24 4gkw_A Spindle assembly abnorm 94.4 3 0.0001 38.0 21.0 61 144-204 26-86 (167)
25 3tnu_A Keratin, type I cytoske 94.4 0.54 1.9E-05 42.2 12.3 47 146-192 80-126 (131)
26 3u59_A Tropomyosin beta chain; 94.2 2 6.9E-05 36.9 15.1 81 96-183 18-98 (101)
27 3tnu_B Keratin, type II cytosk 93.3 1.8 6.2E-05 38.6 13.8 94 101-194 29-126 (129)
28 2b9c_A Striated-muscle alpha t 92.8 1.4 4.7E-05 40.7 12.3 40 148-187 78-117 (147)
29 3tnu_A Keratin, type I cytoske 92.6 1.7 5.8E-05 39.0 12.4 86 119-214 35-120 (131)
30 2b9c_A Striated-muscle alpha t 92.4 2 6.8E-05 39.6 12.9 11 152-162 54-64 (147)
31 3q8t_A Beclin-1; autophagy, AT 91.1 6.7 0.00023 33.5 14.5 55 150-204 39-93 (96)
32 4gkw_A Spindle assembly abnorm 90.9 9.2 0.00031 34.8 21.5 32 224-255 112-143 (167)
33 2e7s_A RAB guanine nucleotide 90.8 0.97 3.3E-05 41.3 8.7 96 106-201 37-133 (135)
34 3ol1_A Vimentin; structural ge 90.6 8 0.00027 34.1 14.5 18 124-141 22-39 (119)
35 3ol1_A Vimentin; structural ge 90.0 7.4 0.00025 34.4 13.7 31 84-114 24-54 (119)
36 3i00_A HIP-I, huntingtin-inter 90.0 1.9 6.5E-05 38.6 9.8 74 170-243 39-118 (120)
37 3ghg_A Fibrinogen alpha chain; 89.9 5 0.00017 43.8 14.7 19 422-440 395-413 (562)
38 3q8t_A Beclin-1; autophagy, AT 89.7 8.9 0.0003 32.7 14.8 67 132-198 28-94 (96)
39 3oja_A Leucine-rich immune mol 89.3 8.5 0.00029 40.6 16.1 55 145-199 423-477 (487)
40 3s4r_A Vimentin; alpha-helix, 89.3 8.1 0.00028 32.8 12.8 36 142-177 55-90 (93)
41 3oja_A Leucine-rich immune mol 89.1 8.2 0.00028 40.7 15.8 29 219-247 458-486 (487)
42 2ocy_A RAB guanine nucleotide 89.0 14 0.00049 34.3 19.6 96 112-207 55-151 (154)
43 3hnw_A Uncharacterized protein 88.9 13 0.00045 33.7 15.7 14 86-99 74-87 (138)
44 3l4q_C Phosphatidylinositol 3- 88.7 16 0.00056 34.4 18.2 53 45-97 17-69 (170)
45 2v4h_A NF-kappa-B essential mo 88.5 7.9 0.00027 34.1 12.4 44 194-248 64-107 (110)
46 2v66_B Nuclear distribution pr 88.5 13 0.00043 32.9 17.1 99 31-146 3-101 (111)
47 3i00_A HIP-I, huntingtin-inter 88.4 2.3 8E-05 38.0 9.2 22 272-293 98-119 (120)
48 2xzr_A Immunoglobulin-binding 88.2 12 0.00041 32.3 16.2 85 30-121 5-89 (114)
49 1f5n_A Interferon-induced guan 87.7 29 0.00098 38.5 19.4 66 128-193 458-523 (592)
50 1ic2_A Tropomyosin alpha chain 87.7 9.6 0.00033 31.3 12.0 42 97-138 9-50 (81)
51 3ghg_A Fibrinogen alpha chain; 86.8 5.6 0.00019 43.5 12.6 16 334-349 230-245 (562)
52 1deq_A Fibrinogen (alpha chain 86.7 35 0.0012 36.0 21.5 54 201-254 104-157 (390)
53 1deq_A Fibrinogen (alpha chain 86.5 13 0.00045 39.1 14.8 41 97-137 63-103 (390)
54 3swk_A Vimentin; cytoskeleton, 85.6 9.4 0.00032 32.0 11.0 39 124-162 2-40 (86)
55 2v66_B Nuclear distribution pr 85.5 19 0.00064 31.8 16.5 27 108-134 3-29 (111)
56 3hhm_B NISH2 P85alpha; PI3KCA, 85.4 30 0.001 36.2 17.2 49 49-97 130-178 (373)
57 1gk4_A Vimentin; intermediate 85.3 11 0.00037 31.2 11.2 49 147-195 30-78 (84)
58 2v4h_A NF-kappa-B essential mo 84.1 22 0.00074 31.4 13.3 40 161-200 66-105 (110)
59 3mq9_A Bone marrow stromal ant 83.2 28 0.00096 36.4 16.0 28 216-243 435-462 (471)
60 1m1j_C Fibrinogen gamma chain; 83.0 23 0.00079 37.6 15.2 8 397-404 207-214 (409)
61 3a7p_A Autophagy protein 16; c 82.7 22 0.00075 33.0 12.9 65 102-166 69-133 (152)
62 1x79_B RAB GTPase binding effe 82.3 26 0.00089 30.9 13.3 27 272-298 83-109 (112)
63 2xzr_A Immunoglobulin-binding 81.9 25 0.00084 30.4 16.7 100 93-192 5-104 (114)
64 1l8d_A DNA double-strand break 81.3 24 0.00082 29.9 12.8 22 92-113 22-43 (112)
65 2eqb_B RAB guanine nucleotide 81.3 26 0.00088 30.3 12.5 51 165-215 13-63 (97)
66 3edv_A Spectrin beta chain, br 80.9 44 0.0015 32.7 26.2 53 37-89 38-91 (323)
67 1x8y_A Lamin A/C; structural p 80.8 7.6 0.00026 32.4 8.5 49 148-196 33-81 (86)
68 2zqm_A Prefoldin beta subunit 80.6 26 0.00087 29.8 13.6 11 83-93 16-26 (117)
69 1m1j_B Fibrinogen beta chain; 79.5 65 0.0022 34.8 17.3 8 397-404 270-277 (464)
70 2no2_A HIP-I, huntingtin-inter 79.1 32 0.0011 29.9 15.0 39 174-212 4-42 (107)
71 1x79_B RAB GTPase binding effe 78.9 34 0.0012 30.2 13.6 65 179-257 39-103 (112)
72 1fxk_A Prefoldin; archaeal pro 78.5 26 0.00089 29.3 11.4 29 77-105 5-33 (107)
73 3swk_A Vimentin; cytoskeleton, 78.0 29 0.001 28.9 11.6 36 132-167 3-38 (86)
74 1fxk_C Protein (prefoldin); ar 77.9 22 0.00075 31.2 11.1 97 159-260 3-131 (133)
75 3s4r_A Vimentin; alpha-helix, 77.1 33 0.0011 29.0 12.2 37 155-191 54-90 (93)
76 2zqm_A Prefoldin beta subunit 77.0 33 0.0011 29.1 12.0 41 142-182 69-109 (117)
77 3jsv_C NF-kappa-B essential mo 76.0 26 0.00089 30.0 10.4 48 192-250 40-87 (94)
78 3cvf_A Homer-3, homer protein 74.7 29 0.00099 28.8 10.1 24 154-177 45-68 (79)
79 1m1j_A Fibrinogen alpha subuni 74.4 84 0.0029 33.9 16.0 58 37-101 57-114 (491)
80 1m1j_B Fibrinogen beta chain; 74.1 1E+02 0.0035 33.3 17.2 6 502-507 397-402 (464)
81 3cve_A Homer protein homolog 1 73.6 22 0.00075 29.1 8.9 46 219-264 9-54 (72)
82 1m1j_C Fibrinogen gamma chain; 73.5 39 0.0013 35.9 13.4 47 116-162 85-131 (409)
83 1fxk_A Prefoldin; archaeal pro 73.4 39 0.0013 28.2 12.8 36 144-179 66-101 (107)
84 3ghg_C Fibrinogen gamma chain; 72.9 92 0.0031 33.1 16.0 28 397-425 207-234 (411)
85 3cvf_A Homer-3, homer protein 72.3 23 0.00079 29.4 8.9 47 218-264 14-60 (79)
86 1m1j_A Fibrinogen alpha subuni 72.0 56 0.0019 35.2 14.0 16 334-349 232-247 (491)
87 4h22_A Leucine-rich repeat fli 71.0 37 0.0013 29.5 10.3 41 109-149 3-43 (103)
88 3l4q_C Phosphatidylinositol 3- 70.4 72 0.0025 30.0 18.0 54 158-211 18-71 (170)
89 3haj_A Human pacsin2 F-BAR; pa 70.2 1.2E+02 0.004 32.3 32.3 23 35-57 26-48 (486)
90 2e7s_A RAB guanine nucleotide 70.2 21 0.00071 32.5 8.9 84 176-264 44-129 (135)
91 3mq7_A Bone marrow stromal ant 69.5 61 0.0021 28.8 14.5 45 158-202 65-109 (121)
92 1f5n_A Interferon-induced guan 68.3 1.5E+02 0.0051 32.8 20.6 23 170-192 518-540 (592)
93 3a7p_A Autophagy protein 16; c 68.2 76 0.0026 29.4 14.1 66 76-141 64-129 (152)
94 3edu_A Beta-I spectrin, spectr 68.0 77 0.0026 29.3 14.5 37 38-74 34-71 (218)
95 3qh9_A Liprin-beta-2; coiled-c 67.4 34 0.0011 28.6 8.8 43 170-212 32-74 (81)
96 3htk_A Structural maintenance 67.1 16 0.00054 27.9 6.5 37 222-258 10-46 (60)
97 3qh9_A Liprin-beta-2; coiled-c 67.0 33 0.0011 28.7 8.7 44 221-264 23-66 (81)
98 2eqb_B RAB guanine nucleotide 65.9 65 0.0022 27.7 14.8 68 113-180 24-92 (97)
99 3nmd_A CGMP dependent protein 65.7 21 0.00071 29.3 7.1 32 110-141 21-52 (72)
100 2i1j_A Moesin; FERM, coiled-co 65.6 8 0.00027 42.6 6.4 59 104-162 338-396 (575)
101 4emc_A Monopolin complex subun 64.6 23 0.00077 34.0 8.3 17 279-295 68-84 (190)
102 2i1j_A Moesin; FERM, coiled-co 64.4 6.3 0.00021 43.5 5.2 54 131-184 337-390 (575)
103 1ik9_A DNA repair protein XRCC 63.1 61 0.0021 31.3 11.4 43 173-215 134-176 (213)
104 3htk_A Structural maintenance 61.8 49 0.0017 25.1 8.5 45 158-202 13-57 (60)
105 3jsv_C NF-kappa-B essential mo 61.7 65 0.0022 27.6 9.8 46 252-297 40-85 (94)
106 3nmd_A CGMP dependent protein 61.7 21 0.00071 29.2 6.5 46 152-197 21-66 (72)
107 1ez3_A Syntaxin-1A; three heli 60.0 82 0.0028 26.9 15.2 68 219-294 56-123 (127)
108 3hhm_B NISH2 P85alpha; PI3KCA, 59.7 1.7E+02 0.0058 30.5 14.9 43 167-209 136-178 (373)
109 1gk4_A Vimentin; intermediate 58.2 77 0.0026 26.0 11.2 42 172-213 27-68 (84)
110 3efg_A Protein SLYX homolog; x 57.4 24 0.00083 29.0 6.3 18 34-51 10-27 (78)
111 3mov_A Lamin-B1; LMNB1, B-type 56.6 20 0.00067 30.6 5.8 23 172-194 66-88 (95)
112 3mq7_A Bone marrow stromal ant 55.7 1.1E+02 0.0038 27.2 14.1 14 226-239 73-86 (121)
113 2no2_A HIP-I, huntingtin-inter 55.4 1E+02 0.0035 26.7 15.9 34 81-114 9-42 (107)
114 3ghg_B Fibrinogen beta chain; 55.3 2.3E+02 0.0078 30.6 15.2 29 170-198 162-190 (461)
115 1wt6_A Myotonin-protein kinase 55.2 92 0.0031 26.0 10.0 35 100-134 37-71 (81)
116 2xdj_A Uncharacterized protein 54.7 56 0.0019 27.2 8.2 22 243-264 25-46 (83)
117 4h22_A Leucine-rich repeat fli 54.6 67 0.0023 28.0 8.8 29 226-254 60-88 (103)
118 3c9i_A Tail needle protein GP2 53.1 1.7E+02 0.0057 28.5 12.1 63 177-239 76-141 (242)
119 2w6a_A ARF GTPase-activating p 52.9 83 0.0028 24.9 8.2 49 143-191 13-61 (63)
120 1x8y_A Lamin A/C; structural p 51.3 60 0.002 26.9 7.9 44 171-214 28-71 (86)
121 4fla_A Regulation of nuclear P 50.7 1.5E+02 0.0051 27.2 13.9 77 216-292 67-147 (152)
122 2lw1_A ABC transporter ATP-bin 50.2 73 0.0025 26.3 8.3 26 86-111 21-46 (89)
123 2ke4_A CDC42-interacting prote 49.4 44 0.0015 28.6 6.9 74 39-114 16-89 (98)
124 2w83_C C-JUN-amino-terminal ki 49.3 1.1E+02 0.0038 25.2 9.0 11 148-158 49-59 (77)
125 2yy0_A C-MYC-binding protein; 48.8 27 0.00093 26.7 4.9 29 220-248 22-50 (53)
126 4etp_A Kinesin-like protein KA 48.8 32 0.0011 36.2 7.2 68 225-299 4-71 (403)
127 3efg_A Protein SLYX homolog; x 48.2 46 0.0016 27.3 6.6 46 93-138 13-58 (78)
128 3cl3_D NF-kappa-B essential mo 47.6 37 0.0013 30.6 6.3 44 86-129 8-51 (130)
129 3iox_A AGI/II, PA; alpha helix 47.5 2.8E+02 0.0095 30.2 14.2 60 176-235 7-66 (497)
130 3a7o_A Autophagy protein 16; c 47.2 1.1E+02 0.0037 25.0 8.3 44 81-124 19-62 (75)
131 2k48_A Nucleoprotein; viral pr 47.0 95 0.0033 27.1 8.5 60 132-191 38-102 (107)
132 1lq7_A Alpha3W; three helix bu 46.9 26 0.00089 27.2 4.5 56 103-158 4-63 (67)
133 1ses_A Seryl-tRNA synthetase; 46.3 1.1E+02 0.0037 32.3 10.9 72 224-306 35-107 (421)
134 2dq0_A Seryl-tRNA synthetase; 45.6 1E+02 0.0035 32.9 10.7 70 222-306 43-112 (455)
135 2k48_A Nucleoprotein; viral pr 45.0 1.6E+02 0.0054 25.7 9.8 34 171-204 35-68 (107)
136 1wle_A Seryl-tRNA synthetase; 44.2 1.2E+02 0.004 33.0 10.9 43 253-306 117-159 (501)
137 2pms_C Pneumococcal surface pr 44.1 1.7E+02 0.0057 26.3 10.0 25 227-251 64-88 (125)
138 1s94_A S-syntaxin; three helix 43.8 1.9E+02 0.0065 26.3 11.5 30 258-294 125-154 (180)
139 3s84_A Apolipoprotein A-IV; fo 43.4 2.6E+02 0.0088 27.8 28.3 13 285-297 236-248 (273)
140 2l5g_B Putative uncharacterize 42.9 50 0.0017 24.3 5.2 31 70-100 6-36 (42)
141 3uux_B Mitochondrial division 42.5 2.6E+02 0.009 27.6 12.1 16 122-137 177-192 (242)
142 2zdi_C Prefoldin subunit alpha 42.1 86 0.0029 28.1 8.1 26 170-195 111-136 (151)
143 2ap3_A Conserved hypothetical 40.9 2.5E+02 0.0086 26.9 12.9 38 67-104 20-57 (199)
144 2zdi_C Prefoldin subunit alpha 40.4 14 0.00048 33.4 2.6 45 216-260 97-141 (151)
145 1gd2_E Transcription factor PA 39.7 1.4E+02 0.0049 24.0 8.1 37 64-105 11-47 (70)
146 2yy0_A C-MYC-binding protein; 39.2 60 0.002 24.8 5.5 26 272-297 25-50 (53)
147 3uux_B Mitochondrial division 39.0 2.2E+02 0.0074 28.2 10.8 42 88-129 178-219 (242)
148 2efl_A Formin-binding protein 38.7 2.7E+02 0.0093 26.7 30.9 13 319-331 283-295 (305)
149 2ic6_A Nucleocapsid protein; h 38.7 1.7E+02 0.0057 24.3 8.5 59 132-190 8-71 (78)
150 1t2k_D Cyclic-AMP-dependent tr 38.5 48 0.0016 25.5 5.0 32 227-258 25-56 (61)
151 4fi5_A Nucleoprotein; structur 38.0 1.5E+02 0.0053 26.1 8.5 61 131-191 24-89 (113)
152 2xv5_A Lamin-A/C; structural p 37.6 1.3E+02 0.0044 24.5 7.6 57 145-201 7-63 (74)
153 1jcd_A Major outer membrane li 37.3 1.4E+02 0.0047 22.9 7.5 43 96-138 6-48 (52)
154 2dq3_A Seryl-tRNA synthetase; 37.2 1.4E+02 0.0049 31.4 10.0 90 225-325 38-134 (425)
155 2y3a_B Phosphatidylinositol 3- 36.9 3.5E+02 0.012 27.4 13.2 36 54-89 27-62 (302)
156 4fla_A Regulation of nuclear P 36.8 2.5E+02 0.0085 25.7 10.4 7 21-27 26-32 (152)
157 1lwu_C Fibrinogen gamma chain; 36.8 70 0.0024 32.9 7.3 28 397-425 129-156 (323)
158 2ic9_A Nucleocapsid protein; h 36.8 1.8E+02 0.006 25.0 8.5 60 132-191 8-72 (96)
159 3qne_A Seryl-tRNA synthetase, 36.6 2.5E+02 0.0087 30.3 12.0 67 229-306 45-114 (485)
160 2ke4_A CDC42-interacting prote 35.0 2.1E+02 0.0072 24.3 10.0 34 108-141 15-48 (98)
161 1lwu_C Fibrinogen gamma chain; 34.7 75 0.0026 32.7 7.2 6 502-507 245-250 (323)
162 3ghg_C Fibrinogen gamma chain; 34.2 4.5E+02 0.015 27.9 14.3 57 109-165 78-134 (411)
163 3fpp_A Macrolide-specific effl 33.8 2E+02 0.0068 28.3 10.0 12 280-291 142-153 (341)
164 3qne_A Seryl-tRNA synthetase, 33.4 1.9E+02 0.0064 31.3 10.3 34 108-141 33-66 (485)
165 1d7m_A Cortexillin I; coiled-c 33.3 2.3E+02 0.0077 24.2 15.7 14 216-229 80-93 (101)
166 3cl3_D NF-kappa-B essential mo 33.0 1.2E+02 0.004 27.4 7.1 75 219-296 25-106 (130)
167 3kbt_A Beta-I spectrin, spectr 32.7 3.4E+02 0.012 26.1 31.3 32 41-72 40-71 (326)
168 1go4_E MAD1 (mitotic arrest de 32.5 2.4E+02 0.0083 24.3 9.3 11 152-162 77-87 (100)
169 3mov_A Lamin-B1; LMNB1, B-type 32.5 99 0.0034 26.2 6.4 41 172-212 38-78 (95)
170 3haj_A Human pacsin2 F-BAR; pa 32.1 4.7E+02 0.016 27.5 20.6 39 224-264 239-277 (486)
171 2dq0_A Seryl-tRNA synthetase; 31.9 3.8E+02 0.013 28.4 12.4 34 108-141 31-64 (455)
172 2lw1_A ABC transporter ATP-bin 31.9 2.1E+02 0.0073 23.4 8.8 21 222-242 61-81 (89)
173 3etw_A Adhesin A; antiparallel 31.1 2.8E+02 0.0096 24.6 12.5 27 34-60 5-31 (119)
174 2oqq_A Transcription factor HY 30.7 1.4E+02 0.0046 22.0 5.8 30 88-117 4-33 (42)
175 1wle_A Seryl-tRNA synthetase; 30.6 2.5E+02 0.0087 30.3 10.8 31 107-137 122-152 (501)
176 4fi5_A Nucleoprotein; structur 29.8 2.9E+02 0.0099 24.3 9.5 33 173-205 24-56 (113)
177 2q6q_A Spindle POLE BODY compo 29.3 2.2E+02 0.0074 23.1 7.4 45 220-264 6-50 (74)
178 2y3a_B Phosphatidylinositol 3- 29.3 4.6E+02 0.016 26.4 15.7 62 46-107 12-73 (302)
179 4etp_A Kinesin-like protein KA 29.2 1.3E+02 0.0043 31.6 7.9 21 146-166 34-54 (403)
180 3k29_A Putative uncharacterize 28.0 3.8E+02 0.013 25.1 20.9 40 147-186 82-121 (169)
181 3u06_A Protein claret segregat 27.7 1E+02 0.0034 32.6 6.9 64 227-297 6-69 (412)
182 1wt6_A Myotonin-protein kinase 27.2 2.7E+02 0.0093 23.2 8.8 21 218-238 46-66 (81)
183 2efk_A CDC42-interacting prote 27.2 4.2E+02 0.014 25.3 33.8 14 318-331 275-288 (301)
184 4dk0_A Putative MACA; alpha-ha 26.9 2E+02 0.0068 28.6 8.7 17 275-291 138-154 (369)
185 1gk6_A Vimentin; intermediate 26.5 2.2E+02 0.0075 21.9 7.0 46 150-195 7-52 (59)
186 2qih_A Protein USPA1; trimeric 25.7 3.9E+02 0.013 24.4 18.8 106 133-238 44-149 (157)
187 3ibp_A Chromosome partition pr 25.3 5.6E+02 0.019 26.1 13.0 53 151-203 4-56 (302)
188 3lss_A Seryl-tRNA synthetase; 24.8 4.5E+02 0.015 28.3 11.4 31 272-306 117-147 (484)
189 1go4_E MAD1 (mitotic arrest de 24.7 1.1E+02 0.0036 26.5 5.2 18 232-249 76-93 (100)
190 1gd2_E Transcription factor PA 24.7 2.6E+02 0.0089 22.4 7.3 18 219-236 31-48 (70)
191 1ses_A Seryl-tRNA synthetase; 24.7 2.7E+02 0.0093 29.2 9.6 28 36-63 33-60 (421)
192 2avr_X Adhesion A; antiparalle 24.6 3.7E+02 0.013 23.8 14.0 24 34-57 5-28 (119)
193 2xnx_M M protein, M1-BC1; cell 23.9 4.2E+02 0.014 24.3 10.4 46 216-261 79-124 (146)
194 3tkl_B LIDA protein, substrate 23.9 1.9E+02 0.0064 28.4 7.3 110 84-197 15-135 (267)
195 3lss_A Seryl-tRNA synthetase; 23.8 3.8E+02 0.013 28.9 10.6 34 108-141 37-70 (484)
196 3iv1_A Tumor susceptibility ge 23.2 3.2E+02 0.011 22.6 9.2 66 188-264 7-72 (78)
197 3t98_B Nucleoporin NUP58/NUP45 23.1 3.4E+02 0.012 22.9 10.4 41 253-296 48-88 (93)
198 4dk0_A Putative MACA; alpha-ha 22.6 2.3E+02 0.0077 28.1 8.2 8 476-483 309-316 (369)
199 3q0x_A Centriole protein; cent 22.4 1.8E+02 0.0062 28.5 7.1 46 232-284 172-217 (228)
200 1d7m_A Cortexillin I; coiled-c 22.1 3.7E+02 0.013 22.9 15.8 19 176-194 72-90 (101)
201 3a7o_A Autophagy protein 16; c 22.0 3.2E+02 0.011 22.2 8.8 29 149-177 24-52 (75)
202 1nkp_B MAX protein, MYC proto- 21.9 2E+02 0.007 23.1 6.3 34 80-113 40-73 (83)
203 3tnf_B LIDA, RAS-related prote 21.8 4E+02 0.014 27.2 9.5 38 160-197 81-118 (384)
204 3swf_A CGMP-gated cation chann 21.7 3.3E+02 0.011 22.3 7.9 26 219-244 9-34 (74)
205 3fpp_A Macrolide-specific effl 21.5 3.3E+02 0.011 26.6 9.1 26 226-251 130-155 (341)
206 2ic9_A Nucleocapsid protein; h 21.4 3.9E+02 0.013 22.9 9.5 32 173-204 7-38 (96)
207 2xu6_A MDV1 coiled coil; prote 21.4 3.3E+02 0.011 22.2 8.3 60 132-191 3-69 (72)
208 3t97_C Nuclear pore glycoprote 21.2 73 0.0025 25.3 3.3 47 114-160 11-57 (64)
209 1zxa_A CGMP-dependent protein 21.1 1.3E+02 0.0045 24.2 4.7 34 20-53 14-47 (67)
210 3gp4_A Transcriptional regulat 21.0 4.3E+02 0.015 23.3 9.7 77 80-156 53-129 (142)
211 4dzn_A Coiled-coil peptide CC- 20.7 2.1E+02 0.0071 19.5 4.8 28 253-287 3-30 (33)
212 2ic6_A Nucleocapsid protein; h 20.6 3.6E+02 0.012 22.3 9.6 32 173-204 7-38 (78)
213 3viq_B Mating-type switching p 20.4 3.8E+02 0.013 22.4 8.1 30 220-249 4-33 (85)
214 1hs7_A Syntaxin VAM3; UP-and-D 20.1 2.6E+02 0.0088 23.9 6.7 42 147-188 14-58 (97)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.43 E-value=7.7e-09 Score=98.39 Aligned_cols=257 Identities=12% Similarity=0.122 Sum_probs=146.3
Q ss_pred hhHHHHHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHH
Q 008630 33 TGQLLVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDE 112 (559)
Q Consensus 33 ~~~~~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~ 112 (559)
++.+...+..++..+..|+..+......+.....-...+-..+......+...+..+..+...+..+...+..+..++..
T Consensus 15 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (284)
T 1c1g_A 15 KENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQL 94 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555666666666666666677777777777777777777777
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 008630 113 LQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFE-------VFEENVSRLQEELTKKTE 185 (559)
Q Consensus 113 Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e-------~leeEv~eLqekl~q~ek 185 (559)
+......+..++......+..+...+..+...+..+...+..+...+..+...+. .++..+..+...+..+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 174 (284)
T 1c1g_A 95 FEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIES 174 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766666666666666666666666665544444444444444444444444444 444445555555555555
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHH
Q 008630 186 EVEEGRKLQEQLLQQIDFKSSEITKNKQEF---EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIE 262 (559)
Q Consensus 186 EIselr~~iq~LeQeLE~~~~Ei~kle~EL---EkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~ 262 (559)
++..+...+..+..++..+...+..+..++ ......+...+..+...+..+...+..+...+......+..+...+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (284)
T 1c1g_A 175 DLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSID 254 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555554444443 33334444444445555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008630 263 QKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKF 296 (559)
Q Consensus 263 ~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~ 296 (559)
.. ...+..+...+..+...++.+..++
T Consensus 255 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~L 281 (284)
T 1c1g_A 255 DL-------EDELYAQKLKYKAISEELDHALNDM 281 (284)
T ss_dssp HH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55 6666666666667777776665554
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.36 E-value=5.9e-08 Score=92.27 Aligned_cols=41 Identities=17% Similarity=0.086 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHH
Q 008630 224 DKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQK 264 (559)
Q Consensus 224 kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k 264 (559)
..+..+...+..+...+..+...+..+...+..+...+...
T Consensus 223 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (284)
T 1c1g_A 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ 263 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333344444444443333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.84 E-value=6.6e-09 Score=123.14 Aligned_cols=8 Identities=25% Similarity=0.497 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q 008630 283 KRLKSQYN 290 (559)
Q Consensus 283 k~LKSqi~ 290 (559)
..|+..++
T Consensus 1119 ~~Le~eie 1126 (1184)
T 1i84_S 1119 RELESHIS 1126 (1184)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 33333333
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.12 E-value=0.00079 Score=67.01 Aligned_cols=14 Identities=21% Similarity=0.102 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhhhC
Q 008630 284 RLKSQYNYICAKFG 297 (559)
Q Consensus 284 ~LKSqi~~L~~k~~ 297 (559)
.|=+.|+.+++..|
T Consensus 176 ~lL~~Yerir~~~~ 189 (256)
T 3na7_A 176 KIYSFYERIRRWAK 189 (256)
T ss_dssp HHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhCC
Confidence 45566777776443
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.99 E-value=0.0015 Score=64.89 Aligned_cols=13 Identities=15% Similarity=0.391 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHH
Q 008630 277 DVIDAYKRLKSQY 289 (559)
Q Consensus 277 ~l~~eyk~LKSqi 289 (559)
++...|..+....
T Consensus 176 ~lL~~Yerir~~~ 188 (256)
T 3na7_A 176 KIYSFYERIRRWA 188 (256)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 4556788887754
No 6
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.55 E-value=0.022 Score=53.84 Aligned_cols=134 Identities=18% Similarity=0.180 Sum_probs=76.8
Q ss_pred HHHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 008630 37 LVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQ 116 (559)
Q Consensus 37 ~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek 116 (559)
--|+.+|++.++++..+++.-++-+...+-.+.-|...++. ....+.++..+...+.+.+..|++.+..|+..
T Consensus 5 neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~-------~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~ 77 (168)
T 3o0z_A 5 NEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQ-------LESLNRELQERNRILENSKSQTDKDYYQLQAI 77 (168)
T ss_dssp -----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778999999999999998888777665554444433333 33333445555555566666666666666655
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 117 LGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGR 191 (559)
Q Consensus 117 ~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr 191 (559)
+..-......+.+.+.++..+|..| ..+++.++........+...|++.+..++++.+.+.
T Consensus 78 L~qEr~~r~q~se~~~elq~ri~~L--------------~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 78 LEAERRDRGHDSEMIGDLQARITSL--------------QEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5444444444444444444444444 444444555555555556666667766666666655
No 7
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=97.54 E-value=0.039 Score=51.54 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=80.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 78 KACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKK 157 (559)
Q Consensus 78 ~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~Ek 157 (559)
.-..|......+...+.++..++.+++..-.++..|+....+..+.-+....++..|...+...+...+.....+..+++
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666667777777777888777777777777777777777777777777777777777766666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 158 EKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQ 200 (559)
Q Consensus 158 Ekeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQe 200 (559)
+++.+-..+...+..+..+...+-++-.++..+..-...|..+
T Consensus 106 ~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~ 148 (155)
T 2efr_A 106 SIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENE 148 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 6666666555555556666555555555555544444444433
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.46 E-value=0.02 Score=55.15 Aligned_cols=103 Identities=17% Similarity=0.074 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 008630 134 LFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEEN----VSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEIT 209 (559)
Q Consensus 134 L~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeE----v~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~ 209 (559)
|...|+.++.....+...+..+..+++.++.+++....+ +..|+..+..+......+...+-.|++.-+.+....
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~- 125 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK- 125 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-
Confidence 333344444444444444555555555555555554333 444444444444444444444444444433333222
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008630 210 KNKQEFEKEKQLLLDKVRGLEEKANELKKNFCEKSSKQ 247 (559)
Q Consensus 210 kle~ELEkE~~el~kkie~l~ek~eeLq~eieelkekL 247 (559)
..+...++++..+++.+....--+..++
T Consensus 126 ----------R~~~~SleD~e~kln~aiEr~alLE~El 153 (189)
T 2v71_A 126 ----------RATIMSLEDFEQRLNQAIERNAFLESEL 153 (189)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233444444444444444444444433
No 9
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.41 E-value=0.043 Score=52.76 Aligned_cols=106 Identities=19% Similarity=0.181 Sum_probs=59.3
Q ss_pred HHHHHHhHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 81 EIKKKCDQLEEHEEKTKTL----IAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEK 156 (559)
Q Consensus 81 eL~~~Qk~L~Ele~kI~~l----e~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~E 156 (559)
.+..++..|+++...-+.+ +.++..++++++.|..+..++..+++..+.+........- ..+..++.++..+.
T Consensus 25 ~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~---~~~~~Lq~el~~l~ 101 (189)
T 2v71_A 25 SFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSY---KQVSVLEDDLSQTR 101 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3444555555555555544 4566677777777777777777777777777766655421 12333444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 157 KEKKCFLTKFEVFEENVSRLQEELTKKTEEVEE 189 (559)
Q Consensus 157 kEkeel~ek~e~leeEv~eLqekl~q~ekEIse 189 (559)
...+.+..++-.++.....|.+....+..-+..
T Consensus 102 ~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD 134 (189)
T 2v71_A 102 AIKEQLHKYVRELEQANDDLERAKRATIMSLED 134 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHH
Confidence 455555555555555555555554444433333
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.39 E-value=0.051 Score=70.48 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHhhhHHHHHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008630 21 DKAKLLQEQEEKTGQLLVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLI 100 (559)
Q Consensus 21 ~~~~l~~~~e~~~~~~~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le 100 (559)
++.+-++.+-.+...=+.||..-...|++|+.+|..+..++.++..-++.+++.|.....+....+....+.+.++....
T Consensus 1910 ~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~ 1989 (3245)
T 3vkg_A 1910 EKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRN 1989 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334455555556788888888999999999999999999888898999988887777766665555554444333
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.21 E-value=0.096 Score=67.97 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 008630 74 LAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDEL 113 (559)
Q Consensus 74 ~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~L 113 (559)
++..|..++...+..+..=..++......+..++.++..+
T Consensus 1907 ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~ 1946 (3245)
T 3vkg_A 1907 LINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQK 1946 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444443333333333333333333333333333
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.95 E-value=0.025 Score=66.90 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHH
Q 008630 97 KTLIAELNSHKKIVDEL 113 (559)
Q Consensus 97 ~~le~e~k~leerL~~L 113 (559)
..+++++..++.++..+
T Consensus 924 ~~LE~kl~eLq~rL~~~ 940 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDEQ 940 (1080)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444344333333
No 13
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.93 E-value=0.16 Score=47.91 Aligned_cols=99 Identities=11% Similarity=0.077 Sum_probs=55.4
Q ss_pred HHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 100 IAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEE 179 (559)
Q Consensus 100 e~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqek 179 (559)
..++..|++++.+++.+++.-++-..+++...-++...+..++....++...+..++.....+...+..++..+.+-.+.
T Consensus 5 neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~ 84 (168)
T 3o0z_A 5 NEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRD 84 (168)
T ss_dssp -----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888888888888888777777777666655555555555555555544444444443333333333
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008630 180 LTKKTEEVEEGRKLQEQLL 198 (559)
Q Consensus 180 l~q~ekEIselr~~iq~Le 198 (559)
..+...-|.++...+..|.
T Consensus 85 r~q~se~~~elq~ri~~L~ 103 (168)
T 3o0z_A 85 RGHDSEMIGDLQARITSLQ 103 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 14
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.52 E-value=0.52 Score=43.95 Aligned_cols=15 Identities=27% Similarity=0.264 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHH
Q 008630 272 KKKRRDVIDAYKRLK 286 (559)
Q Consensus 272 ~rKl~~l~~eyk~LK 286 (559)
..+...+.|++..|+
T Consensus 139 ~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 139 LSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHhh
Confidence 556666666666655
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.49 E-value=0.026 Score=61.17 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008630 170 EENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITK 210 (559)
Q Consensus 170 eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~k 210 (559)
.++...++++...+++.+...+..+..+.+++..+..++..
T Consensus 536 ~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 536 QKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444443333333333
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.48 E-value=0.028 Score=60.98 Aligned_cols=121 Identities=11% Similarity=0.083 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchh
Q 008630 173 VSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEFEKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMD 252 (559)
Q Consensus 173 v~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~ELEkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~ 252 (559)
+..+++++...+..+...+..++...+.+.....++.+....++.+...+..+.+.+..++..+++.++....++..++.
T Consensus 465 i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (597)
T 3oja_B 465 VQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQ 544 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHh
Confidence 33333333333333333333334333333322222222223334444455555555555666666666666666666666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 008630 253 SNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFGLTT 300 (559)
Q Consensus 253 eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~~~~ 300 (559)
+++.+..+++.. +.++.+++.+...++.++.-+-.+++=++
T Consensus 545 ~~~~le~~~~~~-------~~~~~~l~~e~~~~~~~~~~l~~~~~~~~ 585 (597)
T 3oja_B 545 ENIALEKQLDNK-------RAKQAELRQETSLKRQKVKQLEAKKNRNP 585 (597)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred hhHHHHHHHhhh-------hhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 666666666666 77777777777777777777777777433
No 17
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=95.10 E-value=0.79 Score=39.57 Aligned_cols=72 Identities=15% Similarity=0.122 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Q 008630 144 DISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF 215 (559)
Q Consensus 144 eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL 215 (559)
.|+.++.++..++.+++....+.+.++..+..+.....+++.+|..+...++.++..++.....+..-...|
T Consensus 3 ~MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kL 74 (101)
T 3u1c_A 3 HMDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666677777777777777777777777777777777766666666666666555554444333
No 18
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=94.85 E-value=0.26 Score=41.34 Aligned_cols=72 Identities=10% Similarity=0.069 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008630 219 KQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFG 297 (559)
Q Consensus 219 ~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~ 297 (559)
+..|+.+|..+-..+.-|+-++++++.+-..+..+.+.++...+.+ .+...-++.++..+++.+..|.+|+.
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L-------~~en~qLk~E~~~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREEL-------ERENNHLKEQQNGWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4567788888888888888899999888888888888888888888 88888889999999999999999975
No 19
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.84 E-value=2.1 Score=38.32 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 170 EENVSRLQEELTKKTEEVEEGRKLQEQL 197 (559)
Q Consensus 170 eeEv~eLqekl~q~ekEIselr~~iq~L 197 (559)
.+....|...--.++.++..+..+++.+
T Consensus 96 ee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 96 EEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 20
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=94.77 E-value=1.4 Score=37.98 Aligned_cols=73 Identities=5% Similarity=0.024 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 104 NSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKK 183 (559)
Q Consensus 104 k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ 183 (559)
..++..+..++....++-++|..+..++..+...++.+...+......|+..++ .....+.++..|.++|.-+
T Consensus 26 e~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek-------~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 26 EQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEE-------NAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444444444444444443333333333333333222 2233355566665555443
No 21
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=94.56 E-value=0.43 Score=40.01 Aligned_cols=67 Identities=18% Similarity=0.250 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 88 QLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLAD 154 (559)
Q Consensus 88 ~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee 154 (559)
-|..++.+|..+...|..++.++.+|+.+...+..+...++.....|..++..+..+...+...|..
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667899999999999999999999999999999998888888877777777775555555544443
No 22
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.47 E-value=1.6 Score=37.54 Aligned_cols=71 Identities=13% Similarity=0.144 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Q 008630 145 ISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF 215 (559)
Q Consensus 145 ie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL 215 (559)
|+.++.++..++.+++....+.+.++..+..+.....+++.+|..+...+..++..++.....+......|
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kL 74 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666667777777777777777777777777777777766666666666666555555444443
No 23
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=94.37 E-value=0.6 Score=41.74 Aligned_cols=37 Identities=11% Similarity=0.128 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhH
Q 008630 176 LQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNK 212 (559)
Q Consensus 176 Lqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle 212 (559)
++..|..++.++...+...+...++++.+-+-..++.
T Consensus 80 ~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld 116 (129)
T 3tnu_B 80 ARNKLAELEEALQKAKQDMARLLREYQELMNTKLALD 116 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444443333333333
No 24
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=94.36 E-value=3 Score=38.01 Aligned_cols=61 Identities=13% Similarity=0.062 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008630 144 DISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFK 204 (559)
Q Consensus 144 eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~ 204 (559)
++++.+.+|+-.-+.+.+-.++++.++++..--|..|..+..+..-++..++...+.+.++
T Consensus 26 eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn 86 (167)
T 4gkw_A 26 QLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRN 86 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 3333333333333344444455555544444444444445444444444444444444333
No 25
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=94.36 E-value=0.54 Score=42.21 Aligned_cols=47 Identities=11% Similarity=0.188 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 146 SHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRK 192 (559)
Q Consensus 146 e~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~ 192 (559)
..+...|..++.++.+++......-.++..|-.-=..+.-+|+-+|.
T Consensus 80 ~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRk 126 (131)
T 3tnu_A 80 AQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRR 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333344444444444444444443
No 26
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.21 E-value=2 Score=36.85 Aligned_cols=81 Identities=14% Similarity=0.077 Sum_probs=34.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 96 TKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSR 175 (559)
Q Consensus 96 I~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~e 175 (559)
..........++..+..++....++-++|..+..++..+...++.+...+......|+. ........+.++..
T Consensus 18 ~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~-------~ek~~~~AE~evas 90 (101)
T 3u59_A 18 KENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQ-------AEKKATDAEAEVAS 90 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444444444444444333333333333333 32233333556666
Q ss_pred HHHHHHHH
Q 008630 176 LQEELTKK 183 (559)
Q Consensus 176 Lqekl~q~ 183 (559)
|.++|.-+
T Consensus 91 LnRriqll 98 (101)
T 3u59_A 91 LNRRIQLV 98 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665443
No 27
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.35 E-value=1.8 Score=38.59 Aligned_cols=94 Identities=18% Similarity=0.193 Sum_probs=53.3
Q ss_pred HHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 101 AELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL----SLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRL 176 (559)
Q Consensus 101 ~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L----e~eie~~e~eLee~EkEkeel~ek~e~leeEv~eL 176 (559)
..+......+..+......+.-+|+..+.....|...|..+ ...+..+...|..++.++.+++......-.++..|
T Consensus 29 ~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~L 108 (129)
T 3tnu_B 29 DDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQEL 108 (129)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555556666655555555555555 44555566666666667666666666665556666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008630 177 QEELTKKTEEVEEGRKLQ 194 (559)
Q Consensus 177 qekl~q~ekEIselr~~i 194 (559)
-.-=..+.-+|+-+|..+
T Consensus 109 lnvKl~Ld~EIatYRkLL 126 (129)
T 3tnu_B 109 MNTKLALDVEIATYRKLL 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 666566666666666543
No 28
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=92.77 E-value=1.4 Score=40.70 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 148 YKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEV 187 (559)
Q Consensus 148 ~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEI 187 (559)
....|.-++..++...++.+.....+.+|...|....+.+
T Consensus 78 ~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nl 117 (147)
T 2b9c_A 78 VARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNL 117 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333343333444444444444444333333
No 29
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.56 E-value=1.7 Score=38.96 Aligned_cols=86 Identities=17% Similarity=0.125 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 119 AKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLL 198 (559)
Q Consensus 119 kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~Le 198 (559)
....||.+.+..+..|.-+|+.+.+.-..++..|.+.+... ...+..++..|..++.++..++..++...
T Consensus 35 ~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~----------~~~l~~~q~~i~~lE~eL~~~r~em~~ql 104 (131)
T 3tnu_A 35 SGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRY----------CMQLAQIQEMIGSVEEQLAQLRCEMEQQN 104 (131)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555444444444444433322 33355666666777777777777777777
Q ss_pred HHHhhhhHHHHHhHHH
Q 008630 199 QQIDFKSSEITKNKQE 214 (559)
Q Consensus 199 QeLE~~~~Ei~kle~E 214 (559)
++++.+-+-..++..|
T Consensus 105 ~EYq~Ll~vKl~Ld~E 120 (131)
T 3tnu_A 105 QEYKILLDVKTRLEQE 120 (131)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7666665555555533
No 30
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=92.42 E-value=2 Score=39.58 Aligned_cols=11 Identities=9% Similarity=-0.079 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 008630 152 LADEKKEKKCF 162 (559)
Q Consensus 152 Lee~EkEkeel 162 (559)
+..++..+++.
T Consensus 54 ~~~lE~qLkea 64 (147)
T 2b9c_A 54 MEIQEIQLKEA 64 (147)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 31
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=91.06 E-value=6.7 Score=33.51 Aligned_cols=55 Identities=11% Similarity=0.089 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008630 150 QLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFK 204 (559)
Q Consensus 150 ~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~ 204 (559)
..|..++.+.+.+...=..+-.+++.++.++..+.++...+.+++.-...+++.+
T Consensus 39 ~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 39 ENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444444333344445566666666666666666666666666655544
No 32
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=90.93 E-value=9.2 Score=34.83 Aligned_cols=32 Identities=28% Similarity=0.294 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcchhhhH
Q 008630 224 DKVRGLEEKANELKKNFCEKSSKQGWGMDSND 255 (559)
Q Consensus 224 kkie~l~ek~eeLq~eieelkekL~~~e~eie 255 (559)
.-++.+-+.++-|..+++--+-+..+.+.+.+
T Consensus 112 sMVe~LT~TiG~LrKELEdEklK~~E~MdSFE 143 (167)
T 4gkw_A 112 SMVESLTETIGILRKELENEKLKAAENMDSFE 143 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433333444444333
No 33
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.77 E-value=0.97 Score=41.26 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 106 HKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLL-ADEKKEKKCFLTKFEVFEENVSRLQEELTKKT 184 (559)
Q Consensus 106 leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eL-ee~EkEkeel~ek~e~leeEv~eLqekl~q~e 184 (559)
+...+........++..++.+-+.+...+......++.+++++...| +++.+.|...+-....++..+..|+.++....
T Consensus 37 l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e 116 (135)
T 2e7s_A 37 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKD 116 (135)
T ss_dssp HHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666667777777777777777777777777777655 44566666665566666777777777777777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008630 185 EEVEEGRKLQEQLLQQI 201 (559)
Q Consensus 185 kEIselr~~iq~LeQeL 201 (559)
.-|..++.++..|++-+
T Consensus 117 ~ll~~lq~QL~~LK~v~ 133 (135)
T 2e7s_A 117 MLLDTLTLQLKNLKKVM 133 (135)
T ss_dssp HCC--------------
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 66666666666665543
No 34
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=90.61 E-value=8 Score=34.15 Aligned_cols=18 Identities=6% Similarity=0.169 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008630 124 VAREKELTENLFKKIEKL 141 (559)
Q Consensus 124 Iee~kekleeL~~eIe~L 141 (559)
|..++.++..+......+
T Consensus 22 I~~LR~qid~~~~e~a~l 39 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKARV 39 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444333333
No 35
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=89.98 E-value=7.4 Score=34.37 Aligned_cols=31 Identities=10% Similarity=0.101 Sum_probs=12.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 008630 84 KKCDQLEEHEEKTKTLIAELNSHKKIVDELQ 114 (559)
Q Consensus 84 ~~Qk~L~Ele~kI~~le~e~k~leerL~~Le 114 (559)
..++++..+......++.++..+..-+..+.
T Consensus 24 ~LR~qid~~~~e~a~l~leldn~~~~~edfk 54 (119)
T 3ol1_A 24 ELRRQVDQLTNDKARVEVERDNLAEDIMRLR 54 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444433333333333
No 36
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=89.97 E-value=1.9 Score=38.55 Aligned_cols=74 Identities=16% Similarity=0.312 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 170 EENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF------EKEKQLLLDKVRGLEEKANELKKNFCEK 243 (559)
Q Consensus 170 eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL------EkE~~el~kkie~l~ek~eeLq~eieel 243 (559)
+..+.+|...+++++.+++.-+...+...-+.+.+..++..++... ...+.+++.+....++++..|+..+.++
T Consensus 39 q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~~~~~q~~~~e~E~kAqa~Eerf~KLKe~yteL 118 (120)
T 3i00_A 39 QRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSLSEIERKAQANEQRYSKLKEKYSEL 118 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5557788888888888888888777777777777776666665443 3345566666666677777776665544
No 37
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=89.89 E-value=5 Score=43.84 Aligned_cols=19 Identities=21% Similarity=0.466 Sum_probs=0.0
Q ss_pred hhhhhccccccccccCCCC
Q 008630 422 ENIRGNLNKVMKEDVHDRP 440 (559)
Q Consensus 422 ~~~~~~~~~~~~~e~~~~~ 440 (559)
+-+-+..-+.+..|||---
T Consensus 395 ~e~~gs~sp~t~~e~ht~k 413 (562)
T 3ghg_A 395 EEVSGNVSPGTRREYHTEK 413 (562)
T ss_dssp -------------------
T ss_pred ecccCCcCCCccccccccc
Confidence 4444555566666665433
No 38
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=89.68 E-value=8.9 Score=32.74 Aligned_cols=67 Identities=12% Similarity=0.205 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 132 ENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLL 198 (559)
Q Consensus 132 eeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~Le 198 (559)
..|..+-..+..++..++.++..+..+-.+.-..+..+.-.+.+++..+-.+..++.-...+++.|.
T Consensus 28 ~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 28 EDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333344444444444444444444444555555555555555555555555555555553
No 39
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.33 E-value=8.5 Score=40.60 Aligned_cols=55 Identities=9% Similarity=0.100 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 145 ISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQ 199 (559)
Q Consensus 145 ie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQ 199 (559)
..+.+.+.+.++...+...++++.++++..+++..+.++...|.+....++.+-.
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence 3333334444444444444444444444444444444444444444444443333
No 40
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=89.27 E-value=8.1 Score=32.83 Aligned_cols=36 Identities=11% Similarity=0.231 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 142 SLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQ 177 (559)
Q Consensus 142 e~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLq 177 (559)
+..+..++..|+.+..+...+..+++.+..++..+.
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555444444444444443
No 41
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.14 E-value=8.2 Score=40.73 Aligned_cols=29 Identities=10% Similarity=-0.129 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008630 219 KQLLLDKVRGLEEKANELKKNFCEKSSKQ 247 (559)
Q Consensus 219 ~~el~kkie~l~ek~eeLq~eieelkekL 247 (559)
..++...+++..+++..+..+...+.+++
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (487)
T 3oja_A 458 NGEADLALASANATLQELVVREQNLASQL 486 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHhcccHHHHHHHHHHHHHHhc
Confidence 33334555666666666666655555544
No 42
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.02 E-value=14 Score=34.26 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=64.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 112 ELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLL-ADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEG 190 (559)
Q Consensus 112 ~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eL-ee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIsel 190 (559)
.......++..++.+-+.+...+......++.+++++...| +++.+.|...+-....++..+..|+.++-....-|..+
T Consensus 55 ~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~l 134 (154)
T 2ocy_A 55 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTL 134 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666666666777777776554 44566666666666666777888888888888888888
Q ss_pred HHHHHHHHHHHhhhhHH
Q 008630 191 RKLQEQLLQQIDFKSSE 207 (559)
Q Consensus 191 r~~iq~LeQeLE~~~~E 207 (559)
..++..|+.-+.....+
T Consensus 135 q~ql~~LK~v~~~m~~e 151 (154)
T 2ocy_A 135 TLQLKNLKKVMHSLDNE 151 (154)
T ss_dssp HHHHHHHHHTTSCCC--
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 88777777766655443
No 43
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.89 E-value=13 Score=33.68 Aligned_cols=14 Identities=0% Similarity=-0.154 Sum_probs=5.1
Q ss_pred HhHHHHHHHHHHHH
Q 008630 86 CDQLEEHEEKTKTL 99 (559)
Q Consensus 86 Qk~L~Ele~kI~~l 99 (559)
+.....++..+..+
T Consensus 74 ~~~~~~L~~~l~~~ 87 (138)
T 3hnw_A 74 KKMADSLSLDIENK 87 (138)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 44
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=88.68 E-value=16 Score=34.42 Aligned_cols=53 Identities=21% Similarity=0.183 Sum_probs=39.0
Q ss_pred HhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 008630 45 CEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTK 97 (559)
Q Consensus 45 ~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~ 97 (559)
..+-++......||++-+.--|-++++.+-||.|-.++..-...+.=++..+.
T Consensus 17 ~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~ 69 (170)
T 3l4q_C 17 AQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQ 69 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777888888888899999998888888888876665555555543
No 45
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=88.51 E-value=7.9 Score=34.12 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=21.1
Q ss_pred HHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008630 194 QEQLLQQIDFKSSEITKNKQEFEKEKQLLLDKVRGLEEKANELKKNFCEKSSKQG 248 (559)
Q Consensus 194 iq~LeQeLE~~~~Ei~kle~ELEkE~~el~kkie~l~ek~eeLq~eieelkekL~ 248 (559)
+.-|+++++-...|..+.+ .-.+.+.++.+.|..++..++.++.
T Consensus 64 I~vLkaQv~IY~~DF~aER-----------adREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 64 VPVLKAQADIYKADFQAER-----------HAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccch-----------hhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554 3333444444444444444444433
No 46
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=88.49 E-value=13 Score=32.89 Aligned_cols=99 Identities=14% Similarity=0.183 Sum_probs=55.1
Q ss_pred HhhhHHHHHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHH
Q 008630 31 EKTGQLLVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIV 110 (559)
Q Consensus 31 ~~~~~~~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL 110 (559)
-+...|-.++..|..+++.++.++..-..+. .+.+...|+++..+......+...+.-++..-
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~-----------------~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~N 65 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQS-----------------YKQVSVLEDDLSQTRAIKEQLHKYVRELEQAN 65 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455667788888888888886655533322 23344445555555555555555555555555
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 111 DELQRQLGAKTEEVAREKELTENLFKKIEKLSLDIS 146 (559)
Q Consensus 111 ~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie 146 (559)
+.|+...+-...=++-...+++.+-.+...|+.++.
T Consensus 66 DDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 66 DDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555544443
No 47
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=88.40 E-value=2.3 Score=37.97 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008630 272 KKKRRDVIDAYKRLKSQYNYIC 293 (559)
Q Consensus 272 ~rKl~~l~~eyk~LKSqi~~L~ 293 (559)
.+|-.+--..|..||+.|..|.
T Consensus 98 E~kAqa~Eerf~KLKe~yteLr 119 (120)
T 3i00_A 98 ERKAQANEQRYSKLKEKYSELV 119 (120)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455668899999888764
No 48
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=88.21 E-value=12 Score=32.34 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=62.6
Q ss_pred HHhhhHHHHHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHH
Q 008630 30 EEKTGQLLVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKI 109 (559)
Q Consensus 30 e~~~~~~~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leer 109 (559)
|+|+.+++..|--|..+++-...-|-.-.-.|.--+ |-|+.-++.|...++.|.++..+.+.....++-..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~ri~~aig~~d~ri~~Nt-------qaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkE 77 (114)
T 2xzr_A 5 EDKIEEILSKIYHIENEIARIKKLIGAIDGRVTRNT-------QSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKE 77 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHhhhhHHHHhhH-------HHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 789999999999999998887765554444444333 6778888888888888888888877777777777777
Q ss_pred HHHHHHHHhhhH
Q 008630 110 VDELQRQLGAKT 121 (559)
Q Consensus 110 L~~Leek~~kl~ 121 (559)
|+.+..+...+.
T Consensus 78 MKq~aaqsaaLl 89 (114)
T 2xzr_A 78 MKQIEDKIEEIL 89 (114)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777775544443
No 49
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=87.67 E-value=29 Score=38.50 Aligned_cols=66 Identities=21% Similarity=0.233 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 128 KELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKL 193 (559)
Q Consensus 128 kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~ 193 (559)
.+.++...++.+.++..+...-..|.+.++++++.+.+-+..+.+...|.+...+.+.-+..-+..
T Consensus 458 ~~vl~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~ 523 (592)
T 1f5n_A 458 EEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERS 523 (592)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666777777666666666666666666655555444443333
No 50
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=87.65 E-value=9.6 Score=31.28 Aligned_cols=42 Identities=14% Similarity=0.103 Sum_probs=15.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 008630 97 KTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKI 138 (559)
Q Consensus 97 ~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eI 138 (559)
..+..+......++..++.++............-+..|..+|
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKi 50 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKL 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333
No 51
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=86.84 E-value=5.6 Score=43.48 Aligned_cols=16 Identities=13% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhccCC
Q 008630 334 AAYCEINKVKKEVGLS 349 (559)
Q Consensus 334 ~~~~~~~~~~~~~~~~ 349 (559)
.++.++.+++-..+-+
T Consensus 230 kal~ei~Qm~mvLE~~ 245 (562)
T 3ghg_A 230 KALTDMPQMRMELERP 245 (562)
T ss_dssp ----------------
T ss_pred HHhhhhhcEEEEEEec
Confidence 4467777777666644
No 52
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=86.67 E-value=35 Score=35.99 Aligned_cols=54 Identities=13% Similarity=0.085 Sum_probs=25.7
Q ss_pred HhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhh
Q 008630 201 IDFKSSEITKNKQEFEKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSN 254 (559)
Q Consensus 201 LE~~~~Ei~kle~ELEkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~ei 254 (559)
.+.++.-+-....+|+..+..|..+|.+.-..+..|+..++.+..+|..++..|
T Consensus 104 ~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 104 ANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334344444455555555544455555555555555555555444
No 53
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=86.52 E-value=13 Score=39.14 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=20.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 008630 97 KTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKK 137 (559)
Q Consensus 97 ~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~e 137 (559)
+.+...|..|.++|.++.+.......=+-...+.+..-+..
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q 103 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAK 103 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 44555555555566666555554444444444444333333
No 54
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=85.60 E-value=9.4 Score=31.96 Aligned_cols=39 Identities=3% Similarity=0.061 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 124 VAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCF 162 (559)
Q Consensus 124 Iee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel 162 (559)
|..++.++..+......+..++......++++...++.-
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E 40 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 40 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443333
No 55
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=85.47 E-value=19 Score=31.79 Aligned_cols=27 Identities=26% Similarity=0.091 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 008630 108 KIVDELQRQLGAKTEEVAREKELTENL 134 (559)
Q Consensus 108 erL~~Leek~~kl~EEIee~kekleeL 134 (559)
++.+.|..+..++..|++..+.+....
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~ 29 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQ 29 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555444443
No 56
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=85.36 E-value=30 Score=36.17 Aligned_cols=49 Identities=22% Similarity=0.203 Sum_probs=36.0
Q ss_pred HHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 008630 49 ELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTK 97 (559)
Q Consensus 49 ~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~ 97 (559)
+..+.+..+|.+.+---+-++++.|.||.|.+.+..-...+.=+++.+.
T Consensus 130 e~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~a~~af~~~~~~f~~q~~ 178 (373)
T 3hhm_B 130 EYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQCQ 178 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888999988899999999999888888865555444444443
No 57
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=85.32 E-value=11 Score=31.24 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 147 HYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQE 195 (559)
Q Consensus 147 ~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq 195 (559)
.+...|..++.++.+++......-.++..|-.-=..+..+|+-+|..++
T Consensus 30 ~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 30 NYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 3334444444444444444444444444444444555555555555544
No 58
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=84.10 E-value=22 Score=31.36 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 161 CFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQ 200 (559)
Q Consensus 161 el~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQe 200 (559)
-++.+.+.++..+..=....-.+..++..+..++..|+.+
T Consensus 66 vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 66 VLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHH
Confidence 3334444444444443333334444444444444444443
No 59
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=83.16 E-value=28 Score=36.43 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 216 EKEKQLLLDKVRGLEEKANELKKNFCEK 243 (559)
Q Consensus 216 EkE~~el~kkie~l~ek~eeLq~eieel 243 (559)
++++.+-+++|++++..+..|..+++.+
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (471)
T 3mq9_A 435 DAEKAQGQKKVEELEGEITTLNHKLQDA 462 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333
No 60
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=82.98 E-value=23 Score=37.63 Aligned_cols=8 Identities=13% Similarity=0.617 Sum_probs=4.9
Q ss_pred chhhhhhc
Q 008630 397 SWRETRSR 404 (559)
Q Consensus 397 ~~~~~r~~ 404 (559)
.|.+-|.-
T Consensus 207 ~W~~Yk~G 214 (409)
T 1m1j_C 207 NWVQYKEG 214 (409)
T ss_dssp CHHHHHHC
T ss_pred CHHHHHhh
Confidence 57776554
No 61
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=82.66 E-value=22 Score=32.99 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=37.9
Q ss_pred HHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 102 ELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKF 166 (559)
Q Consensus 102 e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~ 166 (559)
.+..|+..+..|+.+...+.+++......++.+..++..|.-.+..++..+..+++|-+.+..+.
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555666666666666666666665555556666666666655554444
No 62
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=82.26 E-value=26 Score=30.94 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 008630 272 KKKRRDVIDAYKRLKSQYNYICAKFGL 298 (559)
Q Consensus 272 ~rKl~~l~~eyk~LKSqi~~L~~k~~~ 298 (559)
..-+..+..+...|+..=++|.+|+-+
T Consensus 83 t~~Re~V~~eL~rLQ~eNd~L~Gk~~~ 109 (112)
T 1x79_B 83 MQSREQVSEELVRLQKDNDSLQGKHSL 109 (112)
T ss_dssp HHHHHHHHTC-----------------
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhhh
Confidence 444444444555566666666665543
No 63
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=81.92 E-value=25 Score=30.43 Aligned_cols=100 Identities=13% Similarity=0.242 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 93 EEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEEN 172 (559)
Q Consensus 93 e~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeE 172 (559)
+.+|.++...+-.++.++.....-....-..+..-+.-+..-...|..+...+.+....|.+....+.+=..+.......
T Consensus 5 ~~~~~~~~~~~~~~~~~~~ri~~aig~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaq 84 (114)
T 2xzr_A 5 EDKIEEILSKIYHIENEIARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDK 84 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHhhhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444433333333333333333333333222222222222222444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008630 173 VSRLQEELTKKTEEVEEGRK 192 (559)
Q Consensus 173 v~eLqekl~q~ekEIselr~ 192 (559)
+.+|..+++-++++|+.+..
T Consensus 85 saaLlsk~yh~ene~ar~kk 104 (114)
T 2xzr_A 85 IEEILSKIYHIENEIARIKK 104 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 44555555555555554443
No 64
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=81.33 E-value=24 Score=29.95 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHH
Q 008630 92 HEEKTKTLIAELNSHKKIVDEL 113 (559)
Q Consensus 92 le~kI~~le~e~k~leerL~~L 113 (559)
+...+..+.+.+..+...+.+|
T Consensus 22 L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 22 ITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333444444444444433
No 65
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=81.31 E-value=26 Score=30.25 Aligned_cols=51 Identities=12% Similarity=0.298 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Q 008630 165 KFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF 215 (559)
Q Consensus 165 k~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL 215 (559)
++..++.++......+..+..++..-+......+.+...+..++..+-..|
T Consensus 13 ~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 13 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444444444444444444444
No 66
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=80.93 E-value=44 Score=32.67 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=35.0
Q ss_pred HHHHHhHHHhHHHHHHHHHH-HhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 008630 37 LVKLESQRCEINELKQELEF-KSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQL 89 (559)
Q Consensus 37 ~~~~~sl~~~~~~l~~~~~~-k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L 89 (559)
+..++.+..+-+.++.++.. ....|.....+.+.|+..--.-+..|..+...|
T Consensus 38 l~~v~~l~~~~~~f~~el~~~~~~~v~~v~~~~~~L~~~~~~~~~~i~~~~~~l 91 (323)
T 3edv_A 38 YEHVTMLQERFREFARDTGNIGQERVDTVNHLADELINSGHSDAATIAEWKDGL 91 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35677778888888888877 677888888888888765333333344443333
No 67
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=80.78 E-value=7.6 Score=32.43 Aligned_cols=49 Identities=20% Similarity=0.220 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 148 YKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQ 196 (559)
Q Consensus 148 ~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~ 196 (559)
+...|..++.++.+++......-.++..|-.-=..+..+|+-+|..++.
T Consensus 33 ~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLEG 81 (86)
T 1x8y_A 33 SRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEG 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 3333444444444444444444444444544445555666666655554
No 68
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=80.62 E-value=26 Score=29.79 Aligned_cols=11 Identities=18% Similarity=-0.015 Sum_probs=4.0
Q ss_pred HHHHhHHHHHH
Q 008630 83 KKKCDQLEEHE 93 (559)
Q Consensus 83 ~~~Qk~L~Ele 93 (559)
+..+..+..+.
T Consensus 16 ~~l~~~~~~l~ 26 (117)
T 2zqm_A 16 ESYQQQLQLVV 26 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 69
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=79.47 E-value=65 Score=34.81 Aligned_cols=8 Identities=25% Similarity=0.758 Sum_probs=4.9
Q ss_pred chhhhhhc
Q 008630 397 SWRETRSR 404 (559)
Q Consensus 397 ~~~~~r~~ 404 (559)
+|.+-|.-
T Consensus 270 ~W~~Yk~G 277 (464)
T 1m1j_B 270 AWDEYKRG 277 (464)
T ss_dssp CHHHHHHC
T ss_pred CHHHHHHH
Confidence 57776544
No 70
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=79.10 E-value=32 Score=29.95 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhH
Q 008630 174 SRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNK 212 (559)
Q Consensus 174 ~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle 212 (559)
..|-++...+.++++..+.....+......+...+....
T Consensus 4 i~LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 4 ADLLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666555555544444433
No 71
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=78.87 E-value=34 Score=30.19 Aligned_cols=65 Identities=12% Similarity=0.054 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHH
Q 008630 179 ELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEFEKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKL 257 (559)
Q Consensus 179 kl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~ELEkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL 257 (559)
.--...++|..+..+.+..++.|..+........ .+.+..+..|....+.++.++..+..+-+.|
T Consensus 39 k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q--------------~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L 103 (112)
T 1x79_B 39 SSEDSSHQISALVLRAQASEILLEELQQGLSQAK--------------RDVQEQMAVLMQSREQVSEELVRLQKDNDSL 103 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 3333444444444444444444444444444443 3344444445555555555555554444433
No 72
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=78.46 E-value=26 Score=29.31 Aligned_cols=29 Identities=10% Similarity=0.169 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 008630 77 SKACEIKKKCDQLEEHEEKTKTLIAELNS 105 (559)
Q Consensus 77 ~~~keL~~~Qk~L~Ele~kI~~le~e~k~ 105 (559)
.+...++..+..+..+...+..++.+++.
T Consensus 5 ~~i~~f~~lq~~~~~l~~q~~~l~~~~~e 33 (107)
T 1fxk_A 5 HQLAQFQQLQQQAQAISVQKQTVEMQINE 33 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444454455444444444333
No 73
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=77.95 E-value=29 Score=28.92 Aligned_cols=36 Identities=11% Similarity=0.164 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 132 ENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFE 167 (559)
Q Consensus 132 eeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e 167 (559)
+.|...|+.+..+-..+.-++.+....++.++.+++
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE 38 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ 38 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555544444444455554444444444443
No 74
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=77.86 E-value=22 Score=31.23 Aligned_cols=97 Identities=13% Similarity=0.170 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhH------------------HH----H-
Q 008630 159 KKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNK------------------QE----F- 215 (559)
Q Consensus 159 keel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle------------------~E----L- 215 (559)
++++...++.++.++..++.++..+...+.++...++.+..- ... ...+ .. +
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l-~~~----~~~~~lvplg~~~yv~a~i~~~~~V~v~lG 77 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDI-QGK----DGSETLVPVGAGSFIKAELKDTSEVIMSVG 77 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTC----TTCEEEEEEETTEEEEEECCSTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccC----CCCeEEEEcCCCcEEEEEECCCCEEEEEcC
Confidence 455666667777778888888888888888877777777652 210 0111 00 1
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHH
Q 008630 216 ---------EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQE 260 (559)
Q Consensus 216 ---------EkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eq 260 (559)
+.-...+..+++.+...++.+...+..+..++..+...++++.++
T Consensus 78 ~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 78 AGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp TTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 777788888888888888888888888888877777777766544
No 75
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=77.07 E-value=33 Score=29.03 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 155 EKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGR 191 (559)
Q Consensus 155 ~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr 191 (559)
++.++..++.+++.+..+-..+.-++-.+..++..++
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555554444444444444444444433
No 76
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=77.04 E-value=33 Score=29.07 Aligned_cols=41 Identities=7% Similarity=0.156 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 142 SLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTK 182 (559)
Q Consensus 142 e~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q 182 (559)
...+..+...++.++.+++.+..++..++.++.+++..+++
T Consensus 69 ~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 69 DKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444445444444444444445555544443
No 77
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=75.99 E-value=26 Score=30.04 Aligned_cols=48 Identities=15% Similarity=0.091 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 008630 192 KLQEQLLQQIDFKSSEITKNKQEFEKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWG 250 (559)
Q Consensus 192 ~~iq~LeQeLE~~~~Ei~kle~ELEkE~~el~kkie~l~ek~eeLq~eieelkekL~~~ 250 (559)
..++-|.++++-...|..+.+ .-.+.+.++.+.|...+..+..++..+
T Consensus 40 E~i~vLk~Qv~IY~~DF~aER-----------adREkl~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAER-----------HAREKLVEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHTTSHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666665555 333444444444444444444444433
No 78
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=74.75 E-value=29 Score=28.84 Aligned_cols=24 Identities=17% Similarity=0.063 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 154 DEKKEKKCFLTKFEVFEENVSRLQ 177 (559)
Q Consensus 154 e~EkEkeel~ek~e~leeEv~eLq 177 (559)
.+..++..+.+.++.+=.++.+|.
T Consensus 45 ~~~~Elk~l~e~Ld~KI~eL~elR 68 (79)
T 3cvf_A 45 RARAEVGRAAQLLDVSLFELSELR 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333344444333333333333333
No 79
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=74.38 E-value=84 Score=33.94 Aligned_cols=58 Identities=10% Similarity=0.058 Sum_probs=27.5
Q ss_pred HHHHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008630 37 LVKLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIA 101 (559)
Q Consensus 37 ~~~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~ 101 (559)
+.--+....+|++|++.| ++.-.+.....+.+-.....+...++..++.+..++++..
T Consensus 57 ~kqerdv~~rI~kLkn~L-------~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~ 114 (491)
T 1m1j_A 57 DDTDQNYSQRIDNIRQQL-------ADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVST 114 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHH-------HHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHH
Confidence 444456667777777332 2222333333333333444444455555555544444443
No 80
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=74.14 E-value=1e+02 Score=33.29 Aligned_cols=6 Identities=50% Similarity=0.600 Sum_probs=3.2
Q ss_pred hhHHHH
Q 008630 502 QCKKFY 507 (559)
Q Consensus 502 ~C~~~Y 507 (559)
-|...|
T Consensus 397 nCA~~~ 402 (464)
T 1m1j_B 397 QCSKED 402 (464)
T ss_dssp CHHHHT
T ss_pred cccccc
Confidence 455554
No 81
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=73.58 E-value=22 Score=29.08 Aligned_cols=46 Identities=20% Similarity=0.173 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHH
Q 008630 219 KQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQK 264 (559)
Q Consensus 219 ~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k 264 (559)
++.++.+-.++++++..|+..++..+.+-.....++..+.+.|+.+
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~K 54 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGK 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3445555666777777777777777777777788888888888888
No 82
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=73.52 E-value=39 Score=35.90 Aligned_cols=47 Identities=13% Similarity=0.010 Sum_probs=23.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 116 QLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCF 162 (559)
Q Consensus 116 k~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel 162 (559)
+..++.+++.+.+..+.....+|..|+..+..+..+|..++..+.++
T Consensus 85 ~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 85 KSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555554444444
No 83
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=73.40 E-value=39 Score=28.19 Aligned_cols=36 Identities=11% Similarity=0.060 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 144 DISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEE 179 (559)
Q Consensus 144 eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqek 179 (559)
....+...++.++.+++.+..++..++.++.+++..
T Consensus 66 ~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 66 LTEELQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 84
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=72.88 E-value=92 Score=33.12 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=12.9
Q ss_pred chhhhhhccCCCCCCCcccccCChhhhhh
Q 008630 397 SWRETRSRQYEGGPDPHDDFLDTPFENIR 425 (559)
Q Consensus 397 ~~~~~r~~~~~~~~d~~d~~~d~~~~~~~ 425 (559)
.|.+-|.-=..-..|+...|.-- +++|-
T Consensus 207 ~W~eYk~GFG~l~~~~~gEfWLG-le~IH 234 (411)
T 3ghg_C 207 NWIQYKEGFGHLSPTGTTEFWLG-NEKIH 234 (411)
T ss_dssp CHHHHHHCEEEECSSSCCCEECC-HHHHH
T ss_pred CHHHHhcccCCcCcCCCCceEec-cHHHh
Confidence 48777654322222233444432 55554
No 85
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=72.33 E-value=23 Score=29.43 Aligned_cols=47 Identities=13% Similarity=0.137 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHH
Q 008630 218 EKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQK 264 (559)
Q Consensus 218 E~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k 264 (559)
.++.++.+-.++++++..|+..++..+.+-.....++..+.+.|+.+
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~K 60 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVS 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34455566666777777777777777777778888888888888888
No 86
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=71.98 E-value=56 Score=35.24 Aligned_cols=16 Identities=13% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhccCC
Q 008630 334 AAYCEINKVKKEVGLS 349 (559)
Q Consensus 334 ~~~~~~~~~~~~~~~~ 349 (559)
.++.++.|.+-..+.+
T Consensus 232 ~al~dm~Qm~mvLE~~ 247 (491)
T 1m1j_A 232 SAFNNIKQMQVVLERP 247 (491)
T ss_dssp ----------------
T ss_pred hHHhhhhheEEEEecC
Confidence 4457777666555544
No 87
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=70.97 E-value=37 Score=29.55 Aligned_cols=41 Identities=10% Similarity=0.117 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 109 IVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYK 149 (559)
Q Consensus 109 rL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e 149 (559)
.+..++++.+++.=-.+++-+--..+.++++-|.-.+++.+
T Consensus 3 sL~EvEEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~e 43 (103)
T 4h22_A 3 SLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELE 43 (103)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666533333333
No 88
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=70.42 E-value=72 Score=30.00 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 008630 158 EKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKN 211 (559)
Q Consensus 158 Ekeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kl 211 (559)
.+.++-.++..+..++..|-+.+..+..+|.-.|+.+++....+.+....+.-.
T Consensus 18 ~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~q 71 (170)
T 3l4q_C 18 QLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQ 71 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555777888889999999999999999999999988888776533
No 89
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=70.22 E-value=1.2e+02 Score=32.31 Aligned_cols=23 Identities=9% Similarity=0.141 Sum_probs=9.8
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHH
Q 008630 35 QLLVKLESQRCEINELKQELEFK 57 (559)
Q Consensus 35 ~~~~~~~sl~~~~~~l~~~~~~k 57 (559)
.|+.++..--...++|..=++++
T Consensus 26 ~L~~r~~~g~~~~~el~~f~keR 48 (486)
T 3haj_A 26 RTVKRIDDGHRLCSDLMNCLHER 48 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333
No 90
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.22 E-value=21 Score=32.53 Aligned_cols=84 Identities=10% Similarity=0.056 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhh
Q 008630 176 LQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF--EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDS 253 (559)
Q Consensus 176 Lqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL--EkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~e 253 (559)
+...+..+..++.+-+......+++...+..++..+-..| +........ +..-..+......+..++.+.+.-
T Consensus 44 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~a-----r~~~~~~e~r~~~L~~ql~e~e~l 118 (135)
T 2e7s_A 44 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADA-----RMEKYAIEILNKRLTEQLREKDML 118 (135)
T ss_dssp HHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHT-----THHHHHHHHHHHHHHHTTTHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444 222222211 222233333334444444555555
Q ss_pred hHHHHHHHHHH
Q 008630 254 NDKLLQEIEQK 264 (559)
Q Consensus 254 ieeL~eqL~~k 264 (559)
+..+..||..+
T Consensus 119 l~~lq~QL~~L 129 (135)
T 2e7s_A 119 LDTLTLQLKNL 129 (135)
T ss_dssp C----------
T ss_pred HHHHHHHHHHH
Confidence 55555444443
No 91
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=69.49 E-value=61 Score=28.81 Aligned_cols=45 Identities=29% Similarity=0.313 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008630 158 EKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQID 202 (559)
Q Consensus 158 Ekeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE 202 (559)
++.+...+++.++.++..|..+|..+..++..+|...+.+..+|-
T Consensus 65 ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 65 EKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 333334456666777777777777777777777776666666553
No 92
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=68.27 E-value=1.5e+02 Score=32.78 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008630 170 EENVSRLQEELTKKTEEVEEGRK 192 (559)
Q Consensus 170 eeEv~eLqekl~q~ekEIselr~ 192 (559)
+..-...++.+.++..++..-+.
T Consensus 518 ~~~~~~~~e~~~ql~~kme~~~~ 540 (592)
T 1f5n_A 518 EQKERSYQEHLKQLTEKMENDRV 540 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666665555443
No 93
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=68.24 E-value=76 Score=29.39 Aligned_cols=66 Identities=17% Similarity=0.127 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008630 76 QSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL 141 (559)
Q Consensus 76 ~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L 141 (559)
+.....|...+..+..+..+|..+..+++-..+-+..|++.+..+.-++...+.++..|..+...|
T Consensus 64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 64 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556777777777777788888888777778888888777777788777777777777777666
No 94
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=67.97 E-value=77 Score=29.34 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=26.7
Q ss_pred HHHHhHHHhHHHHHHHHHH-HhHhhhhHHHHHHHHHHH
Q 008630 38 VKLESQRCEINELKQELEF-KSKEVEGVKEMQKGLIQL 74 (559)
Q Consensus 38 ~~~~sl~~~~~~l~~~~~~-k~~~v~~~~el~~~l~~~ 74 (559)
..+..+..+-+.++.++.. ....|.....+...|+..
T Consensus 34 ~~v~~l~~k~~~f~~el~~~~~~~v~~v~~~~~~L~~~ 71 (218)
T 3edu_A 34 DHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDA 71 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHc
Confidence 4566777777777777776 667777777777777764
No 95
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=67.35 E-value=34 Score=28.60 Aligned_cols=43 Identities=21% Similarity=0.272 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhH
Q 008630 170 EENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNK 212 (559)
Q Consensus 170 eeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle 212 (559)
+-.|.++.++.++.+.++-.-...+..|+++++....++..+.
T Consensus 32 r~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~ 74 (81)
T 3qh9_A 32 KIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLH 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 4444444444444444444444444555555544444444444
No 96
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=67.10 E-value=16 Score=27.95 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHH
Q 008630 222 LLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLL 258 (559)
Q Consensus 222 l~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~ 258 (559)
+...+....+.+......+..+...+......+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~ 46 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIR 46 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333333333333333333
No 97
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=67.05 E-value=33 Score=28.67 Aligned_cols=44 Identities=23% Similarity=0.191 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHH
Q 008630 221 LLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQK 264 (559)
Q Consensus 221 el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k 264 (559)
.+...|.+++-+++++..+-.+...++..+..++..|+++|+.+
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~k 66 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALK 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34455666666777776666666666666666677666666666
No 98
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=65.89 E-value=65 Score=27.74 Aligned_cols=68 Identities=19% Similarity=0.201 Sum_probs=31.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 113 LQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLL-ADEKKEKKCFLTKFEVFEENVSRLQEEL 180 (559)
Q Consensus 113 Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eL-ee~EkEkeel~ek~e~leeEv~eLqekl 180 (559)
....+.++..++..-..+...+......+..+++++...| +++.+.|...+-....++..+..|+.+|
T Consensus 24 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL 92 (97)
T 2eqb_B 24 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334445555555555555555555555555555443 2233444434333333344444444444
No 99
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=65.71 E-value=21 Score=29.27 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=13.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008630 110 VDELQRQLGAKTEEVAREKELTENLFKKIEKL 141 (559)
Q Consensus 110 L~~Leek~~kl~EEIee~kekleeL~~eIe~L 141 (559)
+..|+.-+.++.+||......+..+..+|...
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ek 52 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433333
No 100
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=65.61 E-value=8 Score=42.65 Aligned_cols=59 Identities=7% Similarity=0.137 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 104 NSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCF 162 (559)
Q Consensus 104 k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel 162 (559)
.-++.+|..+++...+..+++.+.++.+..|..+....+.+-+.+.....+++.+.+.+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l 396 (575)
T 2i1j_A 338 QEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRL 396 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444333333444444444444433
No 101
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=64.59 E-value=23 Score=33.98 Aligned_cols=17 Identities=24% Similarity=0.640 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q 008630 279 IDAYKRLKSQYNYICAK 295 (559)
Q Consensus 279 ~~eyk~LKSqi~~L~~k 295 (559)
....-..+.+|..||+=
T Consensus 68 ~e~i~i~~DL~e~LTGl 84 (190)
T 4emc_A 68 AENSEVIKDLYEYLCNV 84 (190)
T ss_dssp HHHHHHHHHHHHHHHSE
T ss_pred HHhhhHHHHHHHHccCc
Confidence 34556788999999864
No 102
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=64.38 E-value=6.3 Score=43.49 Aligned_cols=54 Identities=4% Similarity=0.121 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 131 TENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKT 184 (559)
Q Consensus 131 leeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~e 184 (559)
..++..++..++.++......|...+.....+-++....+++-..|+.+...++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e 390 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQ 390 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555555544444444444444444444443333
No 103
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=63.14 E-value=61 Score=31.33 Aligned_cols=43 Identities=9% Similarity=0.010 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Q 008630 173 VSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF 215 (559)
Q Consensus 173 v~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL 215 (559)
+..++.+...++.+...+...+..+..+++.+.......+..|
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L 176 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDL 176 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566666666666677777766666666555
No 104
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=61.77 E-value=49 Score=25.10 Aligned_cols=45 Identities=11% Similarity=0.085 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008630 158 EKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQID 202 (559)
Q Consensus 158 Ekeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE 202 (559)
.+.+..+++.....++..+..++.++...+...+..+..++.+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 13 QVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333343444444555555555555555555555555555555443
No 105
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=61.68 E-value=65 Score=27.59 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008630 252 DSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFG 297 (559)
Q Consensus 252 ~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~ 297 (559)
..+.=|++|+..-...+.+|+.-+..+..+...|..++..|.+.+.
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~ 85 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 85 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4445677777777777778888888888888888888887777654
No 106
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=61.67 E-value=21 Score=29.24 Aligned_cols=46 Identities=15% Similarity=0.144 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 152 LADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQL 197 (559)
Q Consensus 152 Lee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~L 197 (559)
+-+++..++...+++...+..+.+|+..|.+++.+|..++..++++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444445555555555555555555555444443
No 107
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=59.99 E-value=82 Score=26.90 Aligned_cols=68 Identities=10% Similarity=0.141 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008630 219 KQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICA 294 (559)
Q Consensus 219 ~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~ 294 (559)
..++......++..+..+......... .........--..+...+ .+++.++-.+|...++.|..-|+
T Consensus 56 ~~~i~~~a~~ik~~Lk~l~~~~~~~~~-~~~~s~~~Rir~~q~~~L-------~~kf~e~m~~y~~~q~~yre~~k 123 (127)
T 1ez3_A 56 MSDIKKTANKVRSKLKSIEQSIEQEEG-LNRSSADLRIRKTQHSTL-------SRKFVEVMSEYNATQSDYRERCK 123 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCcHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455555555444433221 111222333445666777 99999999999998888887665
No 108
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=59.74 E-value=1.7e+02 Score=30.49 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 008630 167 EVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEIT 209 (559)
Q Consensus 167 e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~ 209 (559)
...-.+...|-+.+..+..+|...+..+++....+.+....+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~e~~~k~~a~~af~~~~~~f~~q~~ 178 (373)
T 3hhm_B 136 QEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQCQ 178 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335566677777777777777778777777777666655543
No 109
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=58.19 E-value=77 Score=26.03 Aligned_cols=42 Identities=7% Similarity=0.069 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Q 008630 172 NVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQ 213 (559)
Q Consensus 172 Ev~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~ 213 (559)
.+..++..|..++.++...+..++...++++.+-+-..++..
T Consensus 27 ~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~ 68 (84)
T 1gk4_A 27 EAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDI 68 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 355666666666667777776666666666655555555553
No 110
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=57.37 E-value=24 Score=29.00 Aligned_cols=18 Identities=11% Similarity=0.097 Sum_probs=10.4
Q ss_pred hHHHHHHHhHHHhHHHHH
Q 008630 34 GQLLVKLESQRCEINELK 51 (559)
Q Consensus 34 ~~~~~~~~sl~~~~~~l~ 51 (559)
.++..|+..||.++.++.
T Consensus 10 ~~le~Ri~~LE~klAfqE 27 (78)
T 3efg_A 10 QELEARLVELETRLSFQE 27 (78)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344556666666666655
No 111
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=56.56 E-value=20 Score=30.62 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008630 172 NVSRLQEELTKKTEEVEEGRKLQ 194 (559)
Q Consensus 172 Ev~eLqekl~q~ekEIselr~~i 194 (559)
++..|-.--..+..+|+-++..+
T Consensus 66 EYq~LlnvKl~Le~EIatYrkLL 88 (95)
T 3mov_A 66 DYEQLLDVKLALDMEISAYRKLL 88 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555444
No 112
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=55.67 E-value=1.1e+02 Score=27.16 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 008630 226 VRGLEEKANELKKN 239 (559)
Q Consensus 226 ie~l~ek~eeLq~e 239 (559)
++++++++..|.+.
T Consensus 73 vqeLqgEI~~Lnq~ 86 (121)
T 3mq7_A 73 VEELEGEITTLNHK 86 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 113
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=55.40 E-value=1e+02 Score=26.66 Aligned_cols=34 Identities=9% Similarity=0.086 Sum_probs=17.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 008630 81 EIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQ 114 (559)
Q Consensus 81 eL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Le 114 (559)
..++.+|+|......-..++..++-|+.++..++
T Consensus 9 K~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 9 KNAEVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555544
No 114
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=55.27 E-value=2.3e+02 Score=30.59 Aligned_cols=29 Identities=10% Similarity=0.087 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 170 EENVSRLQEELTKKTEEVEEGRKLQEQLL 198 (559)
Q Consensus 170 eeEv~eLqekl~q~ekEIselr~~iq~Le 198 (559)
...+..|+..+..+..+|..+...+..+.
T Consensus 162 ~~~i~~l~~~~~~~~~~i~~l~~~~~~~~ 190 (461)
T 3ghg_B 162 PTNLRVLRSILENLRSKIQKLESDVSAQM 190 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44455555555555555555554444443
No 115
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=55.18 E-value=92 Score=26.00 Aligned_cols=35 Identities=14% Similarity=0.059 Sum_probs=20.0
Q ss_pred HHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 008630 100 IAELNSHKKIVDELQRQLGAKTEEVAREKELTENL 134 (559)
Q Consensus 100 e~e~k~leerL~~Leek~~kl~EEIee~kekleeL 134 (559)
.+.....+.+++..+.+...+..++..++.++.+|
T Consensus 37 r~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 37 RTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556666666666666666666655554
No 116
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=54.67 E-value=56 Score=27.20 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=9.8
Q ss_pred HhhhhhcchhhhHHHHHHHHHH
Q 008630 243 KSSKQGWGMDSNDKLLQEIEQK 264 (559)
Q Consensus 243 lkekL~~~e~eieeL~eqL~~k 264 (559)
+..+|..+..++..|+.+++..
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~ 46 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQEN 46 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHH
Confidence 3334444444444444444444
No 117
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=54.64 E-value=67 Score=27.96 Aligned_cols=29 Identities=10% Similarity=-0.027 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcchhhh
Q 008630 226 VRGLEEKANELKKNFCEKSSKQGWGMDSN 254 (559)
Q Consensus 226 ie~l~ek~eeLq~eieelkekL~~~e~ei 254 (559)
++.+...+..|+..+..++.+|.....-|
T Consensus 60 ~e~~Kr~~~~L~~~~~~lk~~L~qRD~LI 88 (103)
T 4h22_A 60 FEREKHAHSILQFQFAEVKEALKQREEML 88 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444433
No 118
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=53.13 E-value=1.7e+02 Score=28.54 Aligned_cols=63 Identities=19% Similarity=0.199 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 177 QEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEF---EKEKQLLLDKVRGLEEKANELKKN 239 (559)
Q Consensus 177 qekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~EL---EkE~~el~kkie~l~ek~eeLq~e 239 (559)
.-.+...+.+|..++..++..+.+|..+...+..++..+ |.++..+..++.++..++......
T Consensus 76 DViL~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~ 141 (242)
T 3c9i_A 76 DVELADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENN 141 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccc
Confidence 334566677777777777777777777777777777554 444444444444444444444333
No 119
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=52.85 E-value=83 Score=24.87 Aligned_cols=49 Identities=18% Similarity=0.223 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 143 LDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGR 191 (559)
Q Consensus 143 ~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr 191 (559)
.++.+++..|...|..+++++..-..+.+++.-+|..|..+..+-+-+|
T Consensus 13 qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 13 QEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 5677888999999999999998888888889888888888776655544
No 120
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=51.31 E-value=60 Score=26.89 Aligned_cols=44 Identities=18% Similarity=0.062 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Q 008630 171 ENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQE 214 (559)
Q Consensus 171 eEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~E 214 (559)
.++..++..|..++.++..++..++...++++.+-+-..++..|
T Consensus 28 ~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~E 71 (86)
T 1x8y_A 28 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDME 71 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34555666666667777777766666666666555555555533
No 121
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=50.69 E-value=1.5e+02 Score=27.16 Aligned_cols=77 Identities=18% Similarity=0.183 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 216 EKEKQLLLDKVRG----LEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNY 291 (559)
Q Consensus 216 EkE~~el~kkie~----l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~ 291 (559)
..+...+...++. +.+-...|.++++....=+..++.-+....+++......|-+-++++..+..-.+.|++.+.+
T Consensus 67 k~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~s 146 (152)
T 4fla_A 67 KEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQS 146 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3334444444433 344444555555555554555555556666666666444555566666555555566665554
Q ss_pred H
Q 008630 292 I 292 (559)
Q Consensus 292 L 292 (559)
|
T Consensus 147 L 147 (152)
T 4fla_A 147 L 147 (152)
T ss_dssp C
T ss_pred C
Confidence 3
No 122
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=50.19 E-value=73 Score=26.31 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=17.6
Q ss_pred HhHHHHHHHHHHHHHHHHhhHHHHHH
Q 008630 86 CDQLEEHEEKTKTLIAELNSHKKIVD 111 (559)
Q Consensus 86 Qk~L~Ele~kI~~le~e~k~leerL~ 111 (559)
|++|..++..|..++.++..++..|.
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666777777777777666666664
No 123
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=49.39 E-value=44 Score=28.62 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=39.6
Q ss_pred HHHhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 008630 39 KLESQRCEINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQ 114 (559)
Q Consensus 39 ~~~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Le 114 (559)
|-+.|+.+|++|++++.+.+..-+..+-|..-..+.=+ ...-.+...+|.+...+|..+..++.-++.-|..++
T Consensus 16 RkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~--~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 16 QRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQ--MGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGG--GCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777888888887776666553333333222222100 001223344566666666666666666666555554
No 124
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=49.27 E-value=1.1e+02 Score=25.24 Aligned_cols=11 Identities=18% Similarity=0.129 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 008630 148 YKQLLADEKKE 158 (559)
Q Consensus 148 ~e~eLee~EkE 158 (559)
++.+|......
T Consensus 49 l~~El~s~~~~ 59 (77)
T 2w83_C 49 LQGELEAVKQA 59 (77)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 125
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=48.76 E-value=27 Score=26.73 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008630 220 QLLLDKVRGLEEKANELKKNFCEKSSKQG 248 (559)
Q Consensus 220 ~el~kkie~l~ek~eeLq~eieelkekL~ 248 (559)
..+...+++++.+++.|.+++.+++.++.
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344555555555555555555555443
No 126
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=48.76 E-value=32 Score=36.18 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 008630 225 KVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFGLT 299 (559)
Q Consensus 225 kie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~~~ 299 (559)
+++.+.+++..|+++...+..++..++.+++.+.+++... ...++.+.|++..|+.-|.-+|+-=.+.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~rr~l~n~~~elkgnIrV~vRvRP~~ 71 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKE-------ETVRRTLHNELQELRGNIRVYLRIRPAL 71 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHCSEEEEEEECCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 3455555555555555555555555555555555555555 8888888888888887777777665544
No 127
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=48.16 E-value=46 Score=27.34 Aligned_cols=46 Identities=24% Similarity=0.325 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 008630 93 EEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKI 138 (559)
Q Consensus 93 e~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eI 138 (559)
+.+|..++.++-+.+.-|..|..-..+...+|+.++.++..|..++
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444443333
No 128
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=47.64 E-value=37 Score=30.64 Aligned_cols=44 Identities=11% Similarity=0.085 Sum_probs=0.4
Q ss_pred HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHH
Q 008630 86 CDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKE 129 (559)
Q Consensus 86 Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~ke 129 (559)
-.+|.+-..++...+.+++.++.+...+.++...+..|++..+.
T Consensus 8 ~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kq 51 (130)
T 3cl3_D 8 LGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQ 51 (130)
T ss_dssp -------------------------------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34455566666677777788888888888777777777766444
No 129
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=47.48 E-value=2.8e+02 Score=30.19 Aligned_cols=60 Identities=10% Similarity=0.079 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 176 LQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNKQEFEKEKQLLLDKVRGLEEKANE 235 (559)
Q Consensus 176 Lqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle~ELEkE~~el~kkie~l~ek~ee 235 (559)
.|.+|...+.++++.+..-+.++...+..-.++.+...+|+.+...+.++-+..+..++.
T Consensus 7 yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~ 66 (497)
T 3iox_A 7 YQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEA 66 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666666666666666666665555544444454444444444433
No 130
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=47.18 E-value=1.1e+02 Score=24.99 Aligned_cols=44 Identities=18% Similarity=0.187 Sum_probs=28.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHH
Q 008630 81 EIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEV 124 (559)
Q Consensus 81 eL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEI 124 (559)
-+...+..|.+.+.+|+.+...+++..+....|.+.+-.+.=|=
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIEN 62 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIEN 62 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHH
Confidence 34446666777777777777777777777777775555544443
No 131
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=46.99 E-value=95 Score=27.09 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 132 ENLFKKIEKLSLDISHYKQLLADEKKEKKCFL-----TKFEVFEENVSRLQEELTKKTEEVEEGR 191 (559)
Q Consensus 132 eeL~~eIe~Le~eie~~e~eLee~EkEkeel~-----ek~e~leeEv~eLqekl~q~ekEIselr 191 (559)
++|..+|...++.+....++|.+.++..+.== .-+..-+..|..|+.+|.++...+++..
T Consensus 38 eeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 38 QELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555444433211 1112225566666666666655555543
No 132
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=46.86 E-value=26 Score=27.21 Aligned_cols=56 Identities=21% Similarity=0.261 Sum_probs=31.6
Q ss_pred HhhHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 008630 103 LNSHKKIVDELQRQLGAKT--EEVAREKELTENLFKKIEKL--SLDISHYKQLLADEKKE 158 (559)
Q Consensus 103 ~k~leerL~~Leek~~kl~--EEIee~kekleeL~~eIe~L--e~eie~~e~eLee~EkE 158 (559)
++.+++.+..|+++...+- ..|++++.+-++|.+.|+.+ .++....+.+...++++
T Consensus 4 vkaleekvkaleekvkalggggrieelkkkweelkkkieelggggevkkveeevkkleee 63 (67)
T 1lq7_A 4 VKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEE 63 (67)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 3445555555555544442 46777777777888888877 34444444444444443
No 133
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=46.25 E-value=1.1e+02 Score=32.26 Aligned_cols=72 Identities=7% Similarity=0.094 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCcc
Q 008630 224 DKVRGLEEKANELKKNFCEKSSKQGW-GMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFGLTTDK 302 (559)
Q Consensus 224 kkie~l~ek~eeLq~eieelkekL~~-~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~~~~~~ 302 (559)
.+...+..+++.|+++.+.+..+|.. ..+..+.+..+...+ +.++.++..+...+...+..+.-.++ |
T Consensus 35 ~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ip----N 103 (421)
T 1ses_A 35 REVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKAL-------GEEAKRLEEALREKEARLEALLLQVP----L 103 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTTCC----C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhCC----C
Confidence 44455666667777777777777664 123345566666666 77777777777788888887776665 6
Q ss_pred cccc
Q 008630 303 MTSE 306 (559)
Q Consensus 303 ~~~~ 306 (559)
++++
T Consensus 104 ~~~~ 107 (421)
T 1ses_A 104 PPWP 107 (421)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 6655
No 134
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=45.60 E-value=1e+02 Score=32.85 Aligned_cols=70 Identities=17% Similarity=0.289 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCc
Q 008630 222 LLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFGLTTD 301 (559)
Q Consensus 222 l~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~~~~~ 301 (559)
+..+++.++.+.+.+.+++-.+... .+..+.+..+...+ +.++.++..+...+...+..+.-.++
T Consensus 43 ~~~~~~~l~~~~n~~sk~i~~~~~~----~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ip---- 107 (455)
T 2dq0_A 43 KLKEINRLRHERNKIAVEIGKRRKK----GEPVDELLAKSREI-------VKRIGELENEVEELKKKIDYYLWRLP---- 107 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTS----CCCTHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTTSC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc----cccHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhCC----
Confidence 3344444444444444444332211 13456677777777 77788888888888888888887776
Q ss_pred ccccc
Q 008630 302 KMTSE 306 (559)
Q Consensus 302 ~~~~~ 306 (559)
|++++
T Consensus 108 N~~~~ 112 (455)
T 2dq0_A 108 NITHP 112 (455)
T ss_dssp CCCCT
T ss_pred CCCCc
Confidence 55555
No 135
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=44.97 E-value=1.6e+02 Score=25.73 Aligned_cols=34 Identities=15% Similarity=0.312 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008630 171 ENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFK 204 (559)
Q Consensus 171 eEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~ 204 (559)
..+.+|+.++...+.++...+-.+.......+..
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~D 68 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAVEVD 68 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3455666666666666666665555555544443
No 136
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=44.24 E-value=1.2e+02 Score=33.00 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCcccccc
Q 008630 253 SNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFGLTTDKMTSE 306 (559)
Q Consensus 253 eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~~~~~~~~~~ 306 (559)
..+.|..+...+ +.++.++..+...++..+..+.-.++ |++++
T Consensus 117 ~~~~l~~~~~~l-------~~~i~~l~~~~~~~~~~l~~~l~~iP----N~~~~ 159 (501)
T 1wle_A 117 QYQSLRARGREI-------RKQLTLLYPKEAQLEEQFYLRALRLP----NQTHP 159 (501)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTTSC----CCCCT
T ss_pred cHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhCC----CCCCC
Confidence 344556666666 66666777777777777777766665 66655
No 137
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=44.13 E-value=1.7e+02 Score=26.30 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcch
Q 008630 227 RGLEEKANELKKNFCEKSSKQGWGM 251 (559)
Q Consensus 227 e~l~ek~eeLq~eieelkekL~~~e 251 (559)
+.++..+..|+..+-.+..++..++
T Consensus 64 eeL~~ki~eL~~kvA~le~e~~~~e 88 (125)
T 2pms_C 64 EELSDKIDELDAEIAKLEDQLKAAE 88 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 138
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=43.78 E-value=1.9e+02 Score=26.35 Aligned_cols=30 Identities=17% Similarity=0.316 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008630 258 LQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICA 294 (559)
Q Consensus 258 ~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~ 294 (559)
..+...+ .+++.++-.+|..+++.|..=|+
T Consensus 125 ~~q~~~L-------~~kf~~~m~~yq~~q~~y~~~~K 154 (180)
T 1s94_A 125 KTQYSTI-------SRKFVEVMSDYNTTQIDYRDRCK 154 (180)
T ss_dssp HHHHHHH-------HHHHHHHHHHHHHHHHSCTTCCC
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666 78888888888887776665443
No 139
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=43.41 E-value=2.6e+02 Score=27.76 Aligned_cols=13 Identities=31% Similarity=0.421 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhhC
Q 008630 285 LKSQYNYICAKFG 297 (559)
Q Consensus 285 LKSqi~~L~~k~~ 297 (559)
|-.+++.+..++|
T Consensus 236 l~~~~e~l~~~l~ 248 (273)
T 3s84_A 236 LVQQMEQLRQKLG 248 (273)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhC
Confidence 4444555666666
No 140
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=42.86 E-value=50 Score=24.33 Aligned_cols=31 Identities=26% Similarity=0.202 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008630 70 GLIQLAQSKACEIKKKCDQLEEHEEKTKTLI 100 (559)
Q Consensus 70 ~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le 100 (559)
-|+|.|..-.++|......++++..+...++
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777777765555555555544444
No 141
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=42.50 E-value=2.6e+02 Score=27.63 Aligned_cols=16 Identities=31% Similarity=0.266 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 008630 122 EEVAREKELTENLFKK 137 (559)
Q Consensus 122 EEIee~kekleeL~~e 137 (559)
.||.++..++++|...
T Consensus 177 sEI~EID~KI~~L~~m 192 (242)
T 3uux_B 177 SEIRDIEVEVENLRQK 192 (242)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 142
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=42.14 E-value=86 Score=28.12 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 170 EENVSRLQEELTKKTEEVEEGRKLQE 195 (559)
Q Consensus 170 eeEv~eLqekl~q~ekEIselr~~iq 195 (559)
...+..+...+..+...+......++
T Consensus 111 ~~~l~~l~~~l~~l~~~i~~~~~~l~ 136 (151)
T 2zdi_C 111 DEAIKKTQGALAELEKRIGEVARKAQ 136 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 143
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=40.91 E-value=2.5e+02 Score=26.93 Aligned_cols=38 Identities=21% Similarity=0.244 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 008630 67 MQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELN 104 (559)
Q Consensus 67 l~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k 104 (559)
+++.-|+.+-..-.-+...++.|..++.+-..+=..|.
T Consensus 20 ~y~~~leka~~~Ek~~~~~qkkL~~LEkk~q~LY~qI~ 57 (199)
T 2ap3_A 20 AYLKQVDKIKDDEEPIKTVGKKIAELDEKKKKLTEDVN 57 (199)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTGGG
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555555555555555544444433
No 144
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=40.40 E-value=14 Score=33.39 Aligned_cols=45 Identities=11% Similarity=0.203 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHH
Q 008630 216 EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQE 260 (559)
Q Consensus 216 EkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eq 260 (559)
+.-...+..+++.+...++.+...+..+..++...+..++.+.++
T Consensus 97 ~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 97 DEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777888888888888888888888888888877777766654
No 145
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=39.67 E-value=1.4e+02 Score=24.00 Aligned_cols=37 Identities=27% Similarity=0.165 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 008630 64 VKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNS 105 (559)
Q Consensus 64 ~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~ 105 (559)
++-.||+.-|. ..=..+...+.+++.++..++.....
T Consensus 11 kR~~qNR~AQR-----afReRK~~~i~~LE~~v~~le~~~~~ 47 (70)
T 1gd2_E 11 KRKAQNRAAQR-----AFRKRKEDHLKALETQVVTLKELHSS 47 (70)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456665555 22233444444455444444443333
No 146
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=39.17 E-value=60 Score=24.80 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008630 272 KKKRRDVIDAYKRLKSQYNYICAKFG 297 (559)
Q Consensus 272 ~rKl~~l~~eyk~LKSqi~~L~~k~~ 297 (559)
+..+.+++.+|..|+.++..+|.++.
T Consensus 25 k~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 25 RLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555566666666666655
No 147
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=39.05 E-value=2.2e+02 Score=28.23 Aligned_cols=42 Identities=5% Similarity=0.100 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHH
Q 008630 88 QLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKE 129 (559)
Q Consensus 88 ~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~ke 129 (559)
++.++..+|..+....+.+-++|..|+.....|..+|...+.
T Consensus 178 EI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~ 219 (242)
T 3uux_B 178 EIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDD 219 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444443333
No 148
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=38.75 E-value=2.7e+02 Score=26.68 Aligned_cols=13 Identities=23% Similarity=0.250 Sum_probs=7.1
Q ss_pred CCCCCCCCCCCCc
Q 008630 319 RRNPIPFPDKHSD 331 (559)
Q Consensus 319 ~~~~~~~~~~~~~ 331 (559)
.|.|++|++-...
T Consensus 283 ~p~~~~fe~~~~~ 295 (305)
T 2efl_A 283 PPGDIEFEDYTQP 295 (305)
T ss_dssp CCCCCCCCCCC--
T ss_pred CCCCCCCcCCCCC
Confidence 3566678776543
No 149
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=38.72 E-value=1.7e+02 Score=24.26 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 132 ENLFKKIEKLSLDISHYKQLLADEKKEKKCF-----LTKFEVFEENVSRLQEELTKKTEEVEEG 190 (559)
Q Consensus 132 eeL~~eIe~Le~eie~~e~eLee~EkEkeel-----~ek~e~leeEv~eLqekl~q~ekEIsel 190 (559)
++|..+|...++.+....++|...+...+.= +.-+..-+..|..|+.+|.++...+++.
T Consensus 8 ~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~ 71 (78)
T 2ic6_A 8 KEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADL 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555544443321 1111222556666666666665555554
No 150
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=38.48 E-value=48 Score=25.55 Aligned_cols=32 Identities=22% Similarity=0.139 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcchhhhHHHH
Q 008630 227 RGLEEKANELKKNFCEKSSKQGWGMDSNDKLL 258 (559)
Q Consensus 227 e~l~ek~eeLq~eieelkekL~~~e~eieeL~ 258 (559)
..++.++..|..+-..+..++..+..++..|+
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444344433333
No 151
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=37.96 E-value=1.5e+02 Score=26.05 Aligned_cols=61 Identities=13% Similarity=0.100 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 131 TENLFKKIEKLSLDISHYKQLLADEKKEKKCFL-----TKFEVFEENVSRLQEELTKKTEEVEEGR 191 (559)
Q Consensus 131 leeL~~eIe~Le~eie~~e~eLee~EkEkeel~-----ek~e~leeEv~eLqekl~q~ekEIselr 191 (559)
+++|..+|...++.+....++|...++.++.== .-+..-+..|..|+.+|.++...+++..
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~v 89 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRI 89 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556666666666666555543211 1112225666666666666665555543
No 152
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=37.60 E-value=1.3e+02 Score=24.47 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 145 ISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQI 201 (559)
Q Consensus 145 ie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeL 201 (559)
.+.+...|..++.++.+++......-.++..|-.--..++.||+-+|..++.-..++
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLEGEe~Rl 63 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEERL 63 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 334444455555555555555544445555555555666667777776665554443
No 153
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=37.34 E-value=1.4e+02 Score=22.87 Aligned_cols=43 Identities=7% Similarity=0.097 Sum_probs=16.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 008630 96 TKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKI 138 (559)
Q Consensus 96 I~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eI 138 (559)
+..+.+++..|..++..|......+..++...+.....+.++|
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333344444444444444333333334443333333333333
No 154
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=37.19 E-value=1.4e+02 Score=31.40 Aligned_cols=90 Identities=9% Similarity=0.159 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcch---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCc
Q 008630 225 KVRGLEEKANELKKNFCEKSSKQGWGM---DSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFGLTTD 301 (559)
Q Consensus 225 kie~l~ek~eeLq~eieelkekL~~~e---~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~~~~~ 301 (559)
+...+..+++.|+++.+.+..+|.... +..+.+..+...+ +.++.++..+...+...+..+.-.++
T Consensus 38 ~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ip---- 106 (425)
T 2dq3_A 38 RRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKEL-------KEEIDRLEEELRKVEEELKNTLLWIP---- 106 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTSC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhCC----
Confidence 334444455555555555555555432 2344555666666 66777777777788888888877776
Q ss_pred ccccc----ccccccccccccCCCCCCC
Q 008630 302 KMTSE----HKVEEESDSLTHRRNPIPF 325 (559)
Q Consensus 302 ~~~~~----~~~~~~~~~~~~~~~~~~~ 325 (559)
|++++ .+-|+.|-.+.....|..|
T Consensus 107 N~~~~~vp~g~~e~~n~~~~~~g~~~~~ 134 (425)
T 2dq3_A 107 NLPHPSVPVGEDEKDNVEVRRWGEPRKF 134 (425)
T ss_dssp CCCCTTSCCCSSGGGCEEEEEESCCCCC
T ss_pred CCCCCCCCCCCCccCcEEEEEeCCCCCC
Confidence 55554 2334444444443333333
No 155
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=36.87 E-value=3.5e+02 Score=27.35 Aligned_cols=36 Identities=22% Similarity=0.117 Sum_probs=22.6
Q ss_pred HHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 008630 54 LEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQL 89 (559)
Q Consensus 54 ~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L 89 (559)
+-.||.+-+---+-++++.|.||.|-.++..-....
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~af~~~~ 62 (302)
T 2y3a_B 27 YQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETI 62 (302)
T ss_dssp CHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666667777777777776666665544433
No 156
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=36.76 E-value=2.5e+02 Score=25.68 Aligned_cols=7 Identities=43% Similarity=0.406 Sum_probs=3.1
Q ss_pred hHHHHHH
Q 008630 21 DKAKLLQ 27 (559)
Q Consensus 21 ~~~~l~~ 27 (559)
+++.+|+
T Consensus 26 elik~L~ 32 (152)
T 4fla_A 26 ELIKALQ 32 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 157
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=36.76 E-value=70 Score=32.89 Aligned_cols=28 Identities=21% Similarity=0.198 Sum_probs=13.6
Q ss_pred chhhhhhccCCCCCCCcccccCChhhhhh
Q 008630 397 SWRETRSRQYEGGPDPHDDFLDTPFENIR 425 (559)
Q Consensus 397 ~~~~~r~~~~~~~~d~~d~~~d~~~~~~~ 425 (559)
.|.+-|.-=...+.|...+|.-- +++|-
T Consensus 129 ~W~~Yk~GFG~~~~~~~gEfWLG-le~ih 156 (323)
T 1lwu_C 129 DWVSYREGFGYLAPTLTTEFWLG-NEKIH 156 (323)
T ss_dssp CHHHHHHCEEEECSSSCSCEECC-HHHHH
T ss_pred CHHHHhhhhCCcccCCCccEEec-cccee
Confidence 67777654333222224455432 55554
No 158
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=36.75 E-value=1.8e+02 Score=25.01 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 132 ENLFKKIEKLSLDISHYKQLLADEKKEKKCFL-----TKFEVFEENVSRLQEELTKKTEEVEEGR 191 (559)
Q Consensus 132 eeL~~eIe~Le~eie~~e~eLee~EkEkeel~-----ek~e~leeEv~eLqekl~q~ekEIselr 191 (559)
+.|..+|...++.+....++|...+..++.== .-+..-+..|..|+.+|.++...+++..
T Consensus 8 ~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v 72 (96)
T 2ic9_A 8 KEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLI 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555444433211 1112225566666666666665555544
No 159
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=36.56 E-value=2.5e+02 Score=30.32 Aligned_cols=67 Identities=15% Similarity=0.262 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhcch---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccc
Q 008630 229 LEEKANELKKNFCEKSSKQGWGM---DSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFGLTTDKMTS 305 (559)
Q Consensus 229 l~ek~eeLq~eieelkekL~~~e---~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~~~~~~~~~ 305 (559)
+..+++.|+++.+.+..+|.... +..+.+..+...+ +.++.++..+...+...+..+.-.++ |+++
T Consensus 45 ~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l-------~~~i~~le~~~~~~~~~~~~~l~~iP----N~~~ 113 (485)
T 3qne_A 45 LRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKL-------SNEKKEIIEKEAEADKNLRSKINQVG----NIVH 113 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTTSC----CCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhCC----CCCC
Confidence 33334444444444444333321 2355677777777 77777888888888888888777765 5555
Q ss_pred c
Q 008630 306 E 306 (559)
Q Consensus 306 ~ 306 (559)
+
T Consensus 114 ~ 114 (485)
T 3qne_A 114 E 114 (485)
T ss_dssp T
T ss_pred c
Confidence 5
No 160
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=34.99 E-value=2.1e+02 Score=24.34 Aligned_cols=34 Identities=26% Similarity=0.321 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008630 108 KIVDELQRQLGAKTEEVAREKELTENLFKKIEKL 141 (559)
Q Consensus 108 erL~~Leek~~kl~EEIee~kekleeL~~eIe~L 141 (559)
.|...|+.++..+..+|++.....+.|.+-+..+
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY 48 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREALKKMKDVY 48 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566666666666666665555
No 161
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=34.71 E-value=75 Score=32.66 Aligned_cols=6 Identities=17% Similarity=0.396 Sum_probs=3.2
Q ss_pred hhHHHH
Q 008630 502 QCKKFY 507 (559)
Q Consensus 502 ~C~~~Y 507 (559)
-|...|
T Consensus 245 nCA~~~ 250 (323)
T 1lwu_C 245 SCAEQD 250 (323)
T ss_dssp CHHHHH
T ss_pred CccccC
Confidence 455555
No 162
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=34.17 E-value=4.5e+02 Score=27.87 Aligned_cols=57 Identities=12% Similarity=0.040 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 109 IVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKKCFLTK 165 (559)
Q Consensus 109 rL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEkeel~ek 165 (559)
++.-+.++..+..+|+.+....+......|..|+..+......|..++..+..+..+
T Consensus 78 n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~ 134 (411)
T 3ghg_C 78 MIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 134 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566667777777777777777777777776666666666666666555443
No 163
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=33.80 E-value=2e+02 Score=28.28 Aligned_cols=12 Identities=17% Similarity=0.426 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 008630 280 DAYKRLKSQYNY 291 (559)
Q Consensus 280 ~eyk~LKSqi~~ 291 (559)
..+..++..+.+
T Consensus 142 a~l~~a~~~l~~ 153 (341)
T 3fpp_A 142 ASLDTAKTNLDY 153 (341)
T ss_dssp HHHTTTTTTTTS
T ss_pred HHHHHHHHhhhC
Confidence 333344444443
No 164
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=33.40 E-value=1.9e+02 Score=31.34 Aligned_cols=34 Identities=9% Similarity=-0.001 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008630 108 KIVDELQRQLGAKTEEVAREKELTENLFKKIEKL 141 (559)
Q Consensus 108 erL~~Leek~~kl~EEIee~kekleeL~~eIe~L 141 (559)
.++-.|.++.+++..+++.++.+.+.+.++|-.+
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~ 66 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKR 66 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666666665443
No 165
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=33.27 E-value=2.3e+02 Score=24.16 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 008630 216 EKEKQLLLDKVRGL 229 (559)
Q Consensus 216 EkE~~el~kkie~l 229 (559)
++.+.-++-++.+.
T Consensus 80 EKDkAiLELkLaE~ 93 (101)
T 1d7m_A 80 EKDRAILELKLAEA 93 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHh
Confidence 44444444444433
No 166
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=32.99 E-value=1.2e+02 Score=27.44 Aligned_cols=75 Identities=23% Similarity=0.188 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 008630 219 KQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMA-------EKKKRRDVIDAYKRLKSQYNY 291 (559)
Q Consensus 219 ~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~-------e~rKl~~l~~eyk~LKSqi~~ 291 (559)
+.-+..+...+.+++..+..+.++++.+ .-..+..|+=+.....++|.| |++++..|+..|..|=..|++
T Consensus 25 k~~Leek~~~~e~~~~~~~~Elee~kqq---~~~~~d~L~lQ~esmeaalkmEr~~~~eEKrkLAqLQ~AY~~LfqeYd~ 101 (130)
T 3cl3_D 25 CQALEGRARAASEQARQLESEREALQQQ---HSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQLFQEYDN 101 (130)
T ss_dssp --------------------------CT---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555554444443221 122233344444444444433 578888888899999999998
Q ss_pred HHhhh
Q 008630 292 ICAKF 296 (559)
Q Consensus 292 L~~k~ 296 (559)
..+-+
T Consensus 102 ~lK~~ 106 (130)
T 3cl3_D 102 HIKSS 106 (130)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 167
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=32.66 E-value=3.4e+02 Score=26.08 Aligned_cols=32 Identities=9% Similarity=0.086 Sum_probs=13.9
Q ss_pred HhHHHhHHHHHHHHHHHhHhhhhHHHHHHHHH
Q 008630 41 ESQRCEINELKQELEFKSKEVEGVKEMQKGLI 72 (559)
Q Consensus 41 ~sl~~~~~~l~~~~~~k~~~v~~~~el~~~l~ 72 (559)
+.+-.+-..++.+|......|.........|+
T Consensus 40 ~~ll~kh~~~~~el~~~~~~v~~l~~~~~~L~ 71 (326)
T 3kbt_A 40 IVMLKRHLRQQRAVEDYGRNIKQLASRAQGLL 71 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333444444444444444444444444443
No 168
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=32.49 E-value=2.4e+02 Score=24.27 Aligned_cols=11 Identities=9% Similarity=0.009 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 008630 152 LADEKKEKKCF 162 (559)
Q Consensus 152 Lee~EkEkeel 162 (559)
++.+..+.+.+
T Consensus 77 ~e~Lq~E~erL 87 (100)
T 1go4_E 77 HSQLQAECERL 87 (100)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 169
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=32.48 E-value=99 Score=26.20 Aligned_cols=41 Identities=20% Similarity=0.093 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhH
Q 008630 172 NVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNK 212 (559)
Q Consensus 172 Ev~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle 212 (559)
++..++..|..++.++...+..++...+++..+-+-..++.
T Consensus 38 e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le 78 (95)
T 3mov_A 38 EKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALD 78 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555544444444444
No 170
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=32.10 E-value=4.7e+02 Score=27.54 Aligned_cols=39 Identities=18% Similarity=0.069 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHH
Q 008630 224 DKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQK 264 (559)
Q Consensus 224 kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k 264 (559)
.++.-+..-+..+-..+.... .......++.+++.|+..
T Consensus 239 eRi~~lK~~L~~y~~~l~~~~--~~~~~~~~e~l~~~i~~i 277 (486)
T 3haj_A 239 KRLRFFREVLLEVQKHLDLSN--VAGYKAIYHDLEQSIRAA 277 (486)
T ss_dssp HHHHHHHHHHHHHHHHHCCSS--CHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhc--chhHHHHHHHHHHHHHhC
Confidence 345555555554433331111 112334455566555555
No 171
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=31.92 E-value=3.8e+02 Score=28.44 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008630 108 KIVDELQRQLGAKTEEVAREKELTENLFKKIEKL 141 (559)
Q Consensus 108 erL~~Leek~~kl~EEIee~kekleeL~~eIe~L 141 (559)
.++-.|.++.+++..+++.++...+.+.++|-.+
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~ 64 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKR 64 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666667777777777777777777766544
No 172
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=31.85 E-value=2.1e+02 Score=23.41 Aligned_cols=21 Identities=10% Similarity=0.147 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008630 222 LLDKVRGLEEKANELKKNFCE 242 (559)
Q Consensus 222 l~kkie~l~ek~eeLq~eiee 242 (559)
+..++..++..++.+..+=++
T Consensus 61 l~~~l~~~e~eLe~~~erWee 81 (89)
T 2lw1_A 61 VLADMAAAEQELEQAFERWEY 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333333
No 173
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=31.11 E-value=2.8e+02 Score=24.57 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=19.0
Q ss_pred hHHHHHHHhHHHhHHHHHHHHHHHhHh
Q 008630 34 GQLLVKLESQRCEINELKQELEFKSKE 60 (559)
Q Consensus 34 ~~~~~~~~sl~~~~~~l~~~~~~k~~~ 60 (559)
..|..++.+|+....-|.++-..+..+
T Consensus 5 ~~i~~~l~~Leae~q~L~~~E~qry~~ 31 (119)
T 3etw_A 5 ASLVGELQALDAEYQNLANQEEARFNE 31 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888887765555443
No 174
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=30.72 E-value=1.4e+02 Score=22.05 Aligned_cols=30 Identities=23% Similarity=0.234 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 008630 88 QLEEHEEKTKTLIAELNSHKKIVDELQRQL 117 (559)
Q Consensus 88 ~L~Ele~kI~~le~e~k~leerL~~Leek~ 117 (559)
.+.+++.+-+.++....-|++++..|+...
T Consensus 4 Yl~eLE~r~k~le~~naeLEervstLq~EN 33 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERLSTLQNEN 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 456666666666666666666666666543
No 175
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=30.59 E-value=2.5e+02 Score=30.33 Aligned_cols=31 Identities=16% Similarity=-0.012 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 008630 107 KKIVDELQRQLGAKTEEVAREKELTENLFKK 137 (559)
Q Consensus 107 eerL~~Leek~~kl~EEIee~kekleeL~~e 137 (559)
..++..|.+++..+.+++......+..+...
T Consensus 122 ~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~ 152 (501)
T 1wle_A 122 RARGREIRKQLTLLYPKEAQLEEQFYLRALR 152 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444445555555555544443
No 176
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=29.85 E-value=2.9e+02 Score=24.33 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008630 173 VSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKS 205 (559)
Q Consensus 173 v~eLqekl~q~ekEIselr~~iq~LeQeLE~~~ 205 (559)
+.+|+.+|...+.++...+-.+.......+..-
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DP 56 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDP 56 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666666666666666655555555544443
No 177
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=29.32 E-value=2.2e+02 Score=23.10 Aligned_cols=45 Identities=27% Similarity=0.050 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHH
Q 008630 220 QLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQK 264 (559)
Q Consensus 220 ~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k 264 (559)
.++..++.+.++++.+|..-+..+..++..+.+--..|..+..-.
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~ 50 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNL 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666666666555555554444444444444
No 178
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=29.29 E-value=4.6e+02 Score=26.45 Aligned_cols=62 Identities=11% Similarity=0.152 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHH
Q 008630 46 EINELKQELEFKSKEVEGVKEMQKGLIQLAQSKACEIKKKCDQLEEHEEKTKTLIAELNSHK 107 (559)
Q Consensus 46 ~~~~l~~~~~~k~~~v~~~~el~~~l~~~~~~~~keL~~~Qk~L~Ele~kI~~le~e~k~le 107 (559)
.|+.+=+.++.-.++.-++.--+..|+...-..+++|+-+...+..+.+.|..++..+...+
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~af~~~~~~f~~q~~~qe 73 (302)
T 2y3a_B 12 SVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQE 73 (302)
T ss_dssp ---------CCCSSCCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777777777887788888888888888888877777777777777766665544
No 179
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=29.16 E-value=1.3e+02 Score=31.64 Aligned_cols=21 Identities=10% Similarity=0.338 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008630 146 SHYKQLLADEKKEKKCFLTKF 166 (559)
Q Consensus 146 e~~e~eLee~EkEkeel~ek~ 166 (559)
..+.+.+...+..-..+-.++
T Consensus 34 ~~~~~~~~~~~~~rr~l~n~~ 54 (403)
T 4etp_A 34 KELNEILIKEETVRRTLHNEL 54 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 180
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=27.96 E-value=3.8e+02 Score=25.12 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 147 HYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEE 186 (559)
Q Consensus 147 ~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekE 186 (559)
-+...+...+..+.+....+..-++.+...++.+..+.++
T Consensus 82 llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke 121 (169)
T 3k29_A 82 VVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKE 121 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555444444444444444444444443333
No 181
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=27.67 E-value=1e+02 Score=32.60 Aligned_cols=64 Identities=11% Similarity=0.115 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008630 227 RGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKFG 297 (559)
Q Consensus 227 e~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~~ 297 (559)
..|+.++.++.+..+.+..++.....++..+.++|... ...++.+.|+...|+.-|.-.|+-=-
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~-------~~~rr~l~n~~~~l~gnIrV~vRvRP 69 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQS-------NMERKELHNTVMDLRDNIRVFCRIRP 69 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 34555555555555555555555555555666665555 77777777777676665555555433
No 182
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=27.19 E-value=2.7e+02 Score=23.16 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008630 218 EKQLLLDKVRGLEEKANELKK 238 (559)
Q Consensus 218 E~~el~kkie~l~ek~eeLq~ 238 (559)
++.+.+.+..++...+..|..
T Consensus 46 kL~eae~rn~eL~~e~~~l~~ 66 (81)
T 1wt6_A 46 QLREAEARNRDLEAHVRQLQE 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 183
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=27.16 E-value=4.2e+02 Score=25.34 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=7.4
Q ss_pred cCCCCCCCCCCCCc
Q 008630 318 HRRNPIPFPDKHSD 331 (559)
Q Consensus 318 ~~~~~~~~~~~~~~ 331 (559)
.+|.|+.|++-...
T Consensus 275 ~~P~~~~Fe~~~~~ 288 (301)
T 2efk_A 275 ARPGDVEFEDFSQP 288 (301)
T ss_dssp CCCCCCCCCCCC--
T ss_pred CCCCCCCcccCCCc
Confidence 33566677766543
No 184
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=26.88 E-value=2e+02 Score=28.56 Aligned_cols=17 Identities=6% Similarity=0.094 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008630 275 RRDVIDAYKRLKSQYNY 291 (559)
Q Consensus 275 l~~l~~eyk~LKSqi~~ 291 (559)
+...+..+..++..+.+
T Consensus 138 l~~~~~~l~~a~~~l~~ 154 (369)
T 4dk0_A 138 IKQAEIEVNTAETNLGY 154 (369)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 33333444444444443
No 185
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=26.54 E-value=2.2e+02 Score=21.85 Aligned_cols=46 Identities=15% Similarity=0.082 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 150 QLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQE 195 (559)
Q Consensus 150 ~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq 195 (559)
..+..++.++.+++......-.++..|-.-=..++.+|+-.|..++
T Consensus 7 ~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 7 DKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 3344444444444444444444444444444555556665555544
No 186
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=25.67 E-value=3.9e+02 Score=24.43 Aligned_cols=106 Identities=15% Similarity=0.090 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhH
Q 008630 133 NLFKKIEKLSLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDFKSSEITKNK 212 (559)
Q Consensus 133 eL~~eIe~Le~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~~~~Ei~kle 212 (559)
++...+.-....|..+...+.++-.++..+.-.+..+-..|..-+..|.+=...|..-.+.+..|-|+..+..++|.-+.
T Consensus 44 en~~~iakNqadI~~L~~dI~dLd~~v~l~~RdIgsL~ddVa~NqaDIakNqADIdNNinnIYELAQQQDQHSSDIKTLk 123 (157)
T 2qih_A 44 ENKDGIAKNQADIQLHDKKITNLGILHSMVARAVGNNTQGVATNKADIAKNQADIANNIKNIYELAQQQDQHSSDIKTLA 123 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhhcchhhHHHhhHHHHHHhHHHHHhhHHHHHHHHHHHHHhHHHHHHHH
Confidence 33333333344444444444444444444444455555556666666666666777777777788888888888887776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 213 QEFEKEKQLLLDKVRGLEEKANELKK 238 (559)
Q Consensus 213 ~ELEkE~~el~kkie~l~ek~eeLq~ 238 (559)
.---..-.-+.+...+...-++.|..
T Consensus 124 KnS~~NTdnI~knka~~~a~~~~~~~ 149 (157)
T 2qih_A 124 KVSAANTDRIAKNKAEADASFETLTK 149 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhccchhhhhhHHHHhHHHHHhh
Confidence 44322223333444445555555543
No 187
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=25.27 E-value=5.6e+02 Score=26.12 Aligned_cols=53 Identities=11% Similarity=0.025 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008630 151 LLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQLLQQIDF 203 (559)
Q Consensus 151 eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~LeQeLE~ 203 (559)
.+++++..+.+..++...++....+|+.+|.+++...-.=...+..+..-.+.
T Consensus 4 ~~~~l~~~~~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~rL~eq 56 (302)
T 3ibp_A 4 MIASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQ 56 (302)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHH
Confidence 35566667777777777777778888888887777776666666666655444
No 188
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=24.78 E-value=4.5e+02 Score=28.34 Aligned_cols=31 Identities=10% Similarity=0.227 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCcccccc
Q 008630 272 KKKRRDVIDAYKRLKSQYNYICAKFGLTTDKMTSE 306 (559)
Q Consensus 272 ~rKl~~l~~eyk~LKSqi~~L~~k~~~~~~~~~~~ 306 (559)
+.++.++..+...+...+..+.-.++ |++++
T Consensus 117 ~~~i~~le~~~~~~~~~~~~~l~~iP----N~~~~ 147 (484)
T 3lss_A 117 SDQVAGLAKEAQQLEEERDKLMLNVG----NILHE 147 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC----CCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC----CCCCc
Confidence 55566666666677777777776665 66655
No 189
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=24.70 E-value=1.1e+02 Score=26.54 Aligned_cols=18 Identities=6% Similarity=-0.095 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhhhhhc
Q 008630 232 KANELKKNFCEKSSKQGW 249 (559)
Q Consensus 232 k~eeLq~eieelkekL~~ 249 (559)
.++.|+++++.++..+..
T Consensus 76 ~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 76 DHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 190
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=24.68 E-value=2.6e+02 Score=22.43 Aligned_cols=18 Identities=22% Similarity=0.130 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008630 219 KQLLLDKVRGLEEKANEL 236 (559)
Q Consensus 219 ~~el~kkie~l~ek~eeL 236 (559)
+.+|+.++..++.....+
T Consensus 31 i~~LE~~v~~le~~~~~l 48 (70)
T 1gd2_E 31 LKALETQVVTLKELHSST 48 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444333333
No 191
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=24.67 E-value=2.7e+02 Score=29.19 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=17.1
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHhHhhhh
Q 008630 36 LLVKLESQRCEINELKQELEFKSKEVEG 63 (559)
Q Consensus 36 ~~~~~~sl~~~~~~l~~~~~~k~~~v~~ 63 (559)
+-.+.++++.+++.|+.+-..-|++|..
T Consensus 33 ~~~~~r~~~~~~~~l~~~~n~~sk~i~~ 60 (421)
T 1ses_A 33 LDREVQELKKRLQEVQTERNQVAKRVPK 60 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345666666666666666666666653
No 192
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=24.61 E-value=3.7e+02 Score=23.84 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=19.2
Q ss_pred hHHHHHHHhHHHhHHHHHHHHHHH
Q 008630 34 GQLLVKLESQRCEINELKQELEFK 57 (559)
Q Consensus 34 ~~~~~~~~sl~~~~~~l~~~~~~k 57 (559)
..|..+|.+|+.+..-|.++-..+
T Consensus 5 ~~V~s~l~~LEaeyq~L~~kE~qr 28 (119)
T 2avr_X 5 ASLVGELQALDAEYQNLANQEEAR 28 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999888775554
No 193
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=23.91 E-value=4.2e+02 Score=24.27 Aligned_cols=46 Identities=9% Similarity=0.027 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHH
Q 008630 216 EKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEI 261 (559)
Q Consensus 216 EkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL 261 (559)
...+..+...+..+......|.++...+.++..-.+.....|+..|
T Consensus 79 r~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDL 124 (146)
T 2xnx_M 79 RNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDL 124 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC-----------
T ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4444455566666666666666666655555554444444444433
No 194
>3tkl_B LIDA protein, substrate of the DOT/ICM system; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Legionella pneumophila}
Probab=23.85 E-value=1.9e+02 Score=28.41 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=30.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Q 008630 84 KKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKL-----------SLDISHYKQLL 152 (559)
Q Consensus 84 ~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~L-----------e~eie~~e~eL 152 (559)
..|+.+-+++.-|+.+...+.-. +.|..++.++..+..-++.+-+....+++.+ .+.+.+.-..+
T Consensus 15 e~q~~~~~ye~ai~~~qen~~k~----e~L~~rl~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~yeal~~e~ine~i~~~ 90 (267)
T 3tkl_B 15 EIQKMLDEYEQAIKRAQENIKKG----EELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMKAF 90 (267)
T ss_dssp ----------------------------------------------------------------CCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcCHHHHHHHHHHH
Confidence 34555666676666665533211 3344333333344444444444444444444 22222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 153 ADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQL 197 (559)
Q Consensus 153 ee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~L 197 (559)
..--+.+.+|++..-.=+++...|+.+-..+...+..++..++.+
T Consensus 91 ~~~se~~T~imEs~p~DeeEa~kLlhKh~~~~~KlaNLQdl~dvh 135 (267)
T 3tkl_B 91 SKDSEKLTQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAH 135 (267)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHhcCcccHHHHHHHHHHhcccchhhhhHHHHHHHH
Confidence 222222455554442228888888888888887777776644443
No 195
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=23.83 E-value=3.8e+02 Score=28.91 Aligned_cols=34 Identities=12% Similarity=0.016 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008630 108 KIVDELQRQLGAKTEEVAREKELTENLFKKIEKL 141 (559)
Q Consensus 108 erL~~Leek~~kl~EEIee~kekleeL~~eIe~L 141 (559)
.++-.|..+.+++..+++.++...+.+.++|-.+
T Consensus 37 d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~ 70 (484)
T 3lss_A 37 DAIIEADKKWRRTQFLTEASKKLINICSKAVGAK 70 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666666666655443
No 196
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=23.22 E-value=3.2e+02 Score=22.56 Aligned_cols=66 Identities=14% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHH
Q 008630 188 EEGRKLQEQLLQQIDFKSSEITKNKQEFEKEKQLLLDKVRGLEEKANELKKNFCEKSSKQGWGMDSNDKLLQEIEQK 264 (559)
Q Consensus 188 selr~~iq~LeQeLE~~~~Ei~kle~ELEkE~~el~kkie~l~ek~eeLq~eieelkekL~~~e~eieeL~eqL~~k 264 (559)
++-+...-++...+...+.++..++ ..-++|..--..|..-++.++.+-..++.+|+-++....++
T Consensus 7 AVeDKLRrrl~E~~~q~qaEl~sLr-----------rT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 7 AVSDKLRWRMKEEMDRAQAELNALK-----------RTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH-----------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 197
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=23.05 E-value=3.4e+02 Score=22.87 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008630 253 SNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKSQYNYICAKF 296 (559)
Q Consensus 253 eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKSqi~~L~~k~ 296 (559)
.|-...+.+..- +++-.-++..+..+.+.+|.+|-.+.+-+
T Consensus 48 ~L~~~l~~~h~~---FiaLAa~l~~lH~~V~~~Ke~Yl~~rr~~ 88 (93)
T 3t98_B 48 DLSMAMQKIYQT---FVALAAQLQSIHENVKVLKEQYLSYRKMF 88 (93)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444433 67778888889999999999998887754
No 198
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=22.59 E-value=2.3e+02 Score=28.15 Aligned_cols=8 Identities=13% Similarity=-0.105 Sum_probs=3.7
Q ss_pred CCCCcccc
Q 008630 476 GKQGFKYV 483 (559)
Q Consensus 476 ~g~~fay~ 483 (559)
+|..|.|.
T Consensus 309 ~~~~~V~v 316 (369)
T 4dk0_A 309 QDKYVVNV 316 (369)
T ss_dssp CCCCCCCS
T ss_pred CCceEEEE
Confidence 34445553
No 199
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=22.44 E-value=1.8e+02 Score=28.47 Aligned_cols=46 Identities=15% Similarity=0.308 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 232 KANELKKNFCEKSSKQGWGMDSNDKLLQEIEQKTAELMAEKKKRRDVIDAYKR 284 (559)
Q Consensus 232 k~eeLq~eieelkekL~~~e~eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~ 284 (559)
+++.++++...+..++..++.+..+..-+|++- ++.+..++..|..
T Consensus 172 R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~-------~~~~~~~~~~~~~ 217 (228)
T 3q0x_A 172 RLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQC-------RQQLAQLREQYDK 217 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhh
Confidence 455555555555555555555556666666655 6666666665554
No 200
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=22.13 E-value=3.7e+02 Score=22.89 Aligned_cols=19 Identities=16% Similarity=0.060 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008630 176 LQEELTKKTEEVEEGRKLQ 194 (559)
Q Consensus 176 Lqekl~q~ekEIselr~~i 194 (559)
|+..+.+.+++-+.+...+
T Consensus 72 LE~RLsKtEKDkAiLELkL 90 (101)
T 1d7m_A 72 LEARLAKTEKDRAILELKL 90 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHH
Confidence 3344444444444444333
No 201
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=21.95 E-value=3.2e+02 Score=22.22 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 149 KQLLADEKKEKKCFLTKFEVFEENVSRLQ 177 (559)
Q Consensus 149 e~eLee~EkEkeel~ek~e~leeEv~eLq 177 (559)
+..|...+.++..+.+.+...-++...|-
T Consensus 24 r~eL~~Ke~eI~~L~e~i~lk~kd~ErLN 52 (75)
T 3a7o_A 24 QKELKSKEQEIRRLKEVIALKNKNTERLN 52 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHhh
Confidence 33333334443333333333333333333
No 202
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=21.93 E-value=2e+02 Score=23.07 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=12.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 008630 80 CEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDEL 113 (559)
Q Consensus 80 keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~L 113 (559)
..|...-.++..+...+..++.++..+..+...|
T Consensus 40 ~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L 73 (83)
T 1nkp_B 40 QILDKATEYIQYMRRKNHTHQQDIDDLKRQNALL 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334433333333333333333333
No 203
>3tnf_B LIDA, RAS-related protein RAB-8A; protein transport, vesicular trafficking, GTPase, vesicle recuitment, LCV, DRRA, SIDM; HET: GNP; 2.50A {Legionella pneumophila subsp}
Probab=21.84 E-value=4e+02 Score=27.21 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 160 KCFLTKFEVFEENVSRLQEELTKKTEEVEEGRKLQEQL 197 (559)
Q Consensus 160 eel~ek~e~leeEv~eLqekl~q~ekEIselr~~iq~L 197 (559)
.+|++..-.=+++...|+.+-..+...+..++..++.+
T Consensus 81 T~imEs~p~DeeEa~kLlhKh~~~~~KlaNLQdl~dvh 118 (384)
T 3tnf_B 81 TQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAH 118 (384)
T ss_dssp HHHHTTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcccHHHHHHHHHhhcccchhhhhHHHHHHHH
Confidence 44444442228888999998888888887777655444
No 204
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=21.71 E-value=3.3e+02 Score=22.26 Aligned_cols=26 Identities=8% Similarity=0.051 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008630 219 KQLLLDKVRGLEEKANELKKNFCEKS 244 (559)
Q Consensus 219 ~~el~kkie~l~ek~eeLq~eieelk 244 (559)
+..++..++.|+-++..|.++++..+
T Consensus 9 v~~LE~sld~LQTrfARLLaEy~ssQ 34 (74)
T 3swf_A 9 VTRMESSVDLLQTRFARILAEYESMQ 34 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 205
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=21.51 E-value=3.3e+02 Score=26.63 Aligned_cols=26 Identities=0% Similarity=0.103 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcch
Q 008630 226 VRGLEEKANELKKNFCEKSSKQGWGM 251 (559)
Q Consensus 226 ie~l~ek~eeLq~eieelkekL~~~e 251 (559)
+..++..+..++..+...+..+..+.
T Consensus 130 l~~~~a~l~~a~a~l~~a~~~l~~~~ 155 (341)
T 3fpp_A 130 IGTIDAQIKRNQASLDTAKTNLDYTR 155 (341)
T ss_dssp HHHHHHHHHHTHHHHTTTTTTTTSSE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCE
Confidence 34444555566666666676766654
No 206
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=21.41 E-value=3.9e+02 Score=22.90 Aligned_cols=32 Identities=9% Similarity=0.263 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008630 173 VSRLQEELTKKTEEVEEGRKLQEQLLQQIDFK 204 (559)
Q Consensus 173 v~eLqekl~q~ekEIselr~~iq~LeQeLE~~ 204 (559)
+.+|+.+|...+.++...+-.+......++..
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~D 38 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELD 38 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45566666666666666655555544444443
No 207
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=21.39 E-value=3.3e+02 Score=22.15 Aligned_cols=60 Identities=18% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 132 ENLFKKIEKL-------SLDISHYKQLLADEKKEKKCFLTKFEVFEENVSRLQEELTKKTEEVEEGR 191 (559)
Q Consensus 132 eeL~~eIe~L-------e~eie~~e~eLee~EkEkeel~ek~e~leeEv~eLqekl~q~ekEIselr 191 (559)
+.+..+++.+ .+++.++..+++++...-+-+..++..++.+-..|+..+..+.++|..+.
T Consensus 3 ~~~~~~Leml~IrKnma~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~q 69 (72)
T 2xu6_A 3 QTLVNSLEFLNIQKNSTMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFLE 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
No 208
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=21.21 E-value=73 Score=25.33 Aligned_cols=47 Identities=15% Similarity=0.156 Sum_probs=28.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 114 QRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEKKEKK 160 (559)
Q Consensus 114 eek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~EkEke 160 (559)
.++...+..++.+.+.....+...++++++--.++..-|..+|++++
T Consensus 11 gekI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~~v~ 57 (64)
T 3t97_C 11 GEKITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEESVK 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777777777777777775555555555555555443
No 209
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=21.12 E-value=1.3e+02 Score=24.17 Aligned_cols=34 Identities=38% Similarity=0.440 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHhHHHhHHHHHHH
Q 008630 20 FDKAKLLQEQEEKTGQLLVKLESQRCEINELKQE 53 (559)
Q Consensus 20 ~~~~~l~~~~e~~~~~~~~~~~sl~~~~~~l~~~ 53 (559)
..+.+.+..|+.++.+|...|..-...|.+|+.+
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~ 47 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEKEEEIQELKRK 47 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777776633
No 210
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=20.98 E-value=4.3e+02 Score=23.27 Aligned_cols=77 Identities=12% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 80 CEIKKKCDQLEEHEEKTKTLIAELNSHKKIVDELQRQLGAKTEEVAREKELTENLFKKIEKLSLDISHYKQLLADEK 156 (559)
Q Consensus 80 keL~~~Qk~L~Ele~kI~~le~e~k~leerL~~Leek~~kl~EEIee~kekleeL~~eIe~Le~eie~~e~eLee~E 156 (559)
..+...+-.|.++..-+......-.........|..+...+.++|..+...+..|...|..+++.+.....++..+.
T Consensus 53 ~~lr~~G~sL~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~~ 129 (142)
T 3gp4_A 53 RQMRRAGLSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDFN 129 (142)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
No 211
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=20.66 E-value=2.1e+02 Score=19.49 Aligned_cols=28 Identities=29% Similarity=0.142 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008630 253 SNDKLLQEIEQKTAELMAEKKKRRDVIDAYKRLKS 287 (559)
Q Consensus 253 eieeL~eqL~~k~~el~~e~rKl~~l~~eyk~LKS 287 (559)
+|..|.++|..+ ++.+.+++.++.-||.
T Consensus 3 eiaalkqeiaal-------kkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAAL-------KKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-------HHHHHHHHHHHHHHHc
Confidence 455666666666 5555555555555543
No 212
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=20.63 E-value=3.6e+02 Score=22.26 Aligned_cols=32 Identities=9% Similarity=0.263 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008630 173 VSRLQEELTKKTEEVEEGRKLQEQLLQQIDFK 204 (559)
Q Consensus 173 v~eLqekl~q~ekEIselr~~iq~LeQeLE~~ 204 (559)
+.+|+.+|...+.++...+-.+.......+..
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~D 38 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELD 38 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45566666666666666555444444444433
No 213
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=20.38 E-value=3.8e+02 Score=22.42 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008630 220 QLLLDKVRGLEEKANELKKNFCEKSSKQGW 249 (559)
Q Consensus 220 ~el~kkie~l~ek~eeLq~eieelkekL~~ 249 (559)
..+..++..+++.+..|.+++..+..++.+
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~ 33 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKN 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345566666666666666666666655543
No 214
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=20.11 E-value=2.6e+02 Score=23.86 Aligned_cols=42 Identities=14% Similarity=0.078 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHH
Q 008630 147 HYKQLLADEKKEKKCFLTKFEVF--EENVS-RLQEELTKKTEEVE 188 (559)
Q Consensus 147 ~~e~eLee~EkEkeel~ek~e~l--eeEv~-eLqekl~q~ekEIs 188 (559)
.+...|..+++....+..+.+.. +..+. +|+-...++.+++.
T Consensus 14 t~s~niq~l~k~~~qlGTkrD~~~LR~~l~~~l~~~~~~L~k~~~ 58 (97)
T 1hs7_A 14 TFAEQSRVLEKECTKIGSKRDSKELRYKIETELIPNCTSVRDKIE 58 (97)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444446677777777777544 88888 88888888888887
Done!