Query 008631
Match_columns 558
No_of_seqs 245 out of 901
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 08:04:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008631.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008631hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ati_A MITF, microphthalmia-as 99.6 1.6E-16 5.5E-21 140.9 7.2 88 359-446 14-110 (118)
2 1am9_A Srebp-1A, protein (ster 99.6 2.9E-16 9.9E-21 131.1 5.1 65 373-437 7-71 (82)
3 4h10_B Circadian locomoter out 99.5 1.5E-14 5.2E-19 119.1 4.6 57 373-429 9-65 (71)
4 1an4_A Protein (upstream stimu 99.5 9.9E-15 3.4E-19 116.2 3.3 54 372-425 5-63 (65)
5 1a0a_A BHLH, protein (phosphat 99.5 5.1E-15 1.8E-19 118.7 1.4 53 374-426 4-62 (63)
6 4h10_A ARYL hydrocarbon recept 99.5 9.2E-15 3.2E-19 120.6 1.5 53 370-423 7-63 (73)
7 1hlo_A Protein (transcription 99.4 1.6E-13 5.4E-18 113.6 6.0 61 374-435 14-76 (80)
8 1nkp_B MAX protein, MYC proto- 99.4 2.1E-13 7E-18 113.3 6.3 62 374-436 4-67 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 6.2E-13 2.1E-17 112.7 6.2 59 374-433 8-69 (88)
10 3u5v_A Protein MAX, transcript 99.3 1.1E-12 3.6E-17 109.1 3.8 57 374-430 7-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.2 3.7E-11 1.3E-15 100.4 7.2 60 375-435 4-66 (80)
12 4f3l_A Mclock, circadian locom 98.9 9.8E-10 3.3E-14 109.9 5.7 53 372-425 12-65 (361)
13 1mdy_A Protein (MYOD BHLH doma 98.8 3.2E-09 1.1E-13 86.6 4.7 51 375-426 15-67 (68)
14 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 1.8E-09 6.3E-14 109.4 3.9 54 370-424 11-68 (387)
15 2ql2_B Neurod1, neurogenic dif 98.8 7.2E-09 2.5E-13 82.5 5.4 52 375-426 5-58 (60)
16 4ath_A MITF, microphthalmia-as 98.6 4.3E-08 1.5E-12 83.2 5.1 64 384-447 4-76 (83)
17 2lfh_A DNA-binding protein inh 98.2 4.7E-07 1.6E-11 74.4 1.8 46 377-423 19-67 (68)
18 4aya_A DNA-binding protein inh 97.5 0.00017 5.8E-09 62.8 6.4 48 380-427 33-82 (97)
19 2wt7_A Proto-oncogene protein 42.6 46 0.0016 26.1 5.5 46 380-439 1-46 (63)
20 3coq_A Regulatory protein GAL4 35.8 28 0.00094 27.7 3.3 28 415-442 44-71 (89)
21 2er8_A Regulatory protein Leu3 28.8 36 0.0012 26.2 2.8 21 416-436 49-69 (72)
22 1zme_C Proline utilization tra 28.6 21 0.00071 27.3 1.4 21 416-436 44-64 (70)
23 1p3q_Q VPS9P, vacuolar protein 28.4 61 0.0021 25.5 4.0 27 377-403 2-28 (54)
24 2wuj_A Septum site-determining 25.1 67 0.0023 24.9 3.7 30 409-438 27-56 (57)
25 2oqq_A Transcription factor HY 22.8 25 0.00087 26.6 0.8 25 416-440 3-27 (42)
26 1dh3_A Transcription factor CR 22.6 56 0.0019 25.3 2.8 23 416-438 22-44 (55)
27 1hwt_C Protein (heme activator 22.3 44 0.0015 26.1 2.2 22 415-436 57-78 (81)
28 2jee_A YIIU; FTSZ, septum, coi 22.0 74 0.0025 26.9 3.6 27 411-437 15-41 (81)
29 3muj_A Transcription factor CO 21.3 95 0.0032 28.6 4.4 36 386-421 95-133 (138)
30 1pyi_A Protein (pyrimidine pat 20.2 82 0.0028 25.3 3.5 23 415-437 47-69 (96)
No 1
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.64 E-value=1.6e-16 Score=140.94 Aligned_cols=88 Identities=30% Similarity=0.423 Sum_probs=50.8
Q ss_pred CccchhhhhccccccccccHHHHHHHHHHHHHHHHHhhcCCCCCC---CCCchhhHHHHHHHHHHHHHHHHHHHhh----
Q 008631 359 KEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSK---VTGKAVMLDEIINYVQSLQRQVEFLSMK---- 431 (558)
Q Consensus 359 ke~~i~~RaRR~qat~~HslaERrRReKINer~kaLq~LVP~~~K---~tDKASILdeAI~YIK~LQ~QVe~Le~k---- 431 (558)
.++..+.+++++++..+|+++||+||++||++|.+|++|||+|.+ ..+|++||++||+||++||.+++.|+..
T Consensus 14 t~~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~ 93 (118)
T 4ati_A 14 TESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQ 93 (118)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred CcchHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888888999999999999999999999999999863 2489999999999999999999999854
Q ss_pred --hhhcCCCccchhhhh
Q 008631 432 --LATVNPRLDFNIEEL 446 (558)
Q Consensus 432 --~aavnp~l~~~ie~L 446 (558)
+...+..|...|+.|
T Consensus 94 ~~l~~~n~~L~~riqeL 110 (118)
T 4ati_A 94 KKLEHANRHLLLRVQEL 110 (118)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 344555565555554
No 2
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.61 E-value=2.9e-16 Score=131.13 Aligned_cols=65 Identities=25% Similarity=0.376 Sum_probs=58.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 008631 373 TNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNP 437 (558)
Q Consensus 373 t~~HslaERrRReKINer~kaLq~LVP~~~K~tDKASILdeAI~YIK~LQ~QVe~Le~k~aavnp 437 (558)
...|+++||+||++||++|.+|++|||++....+||+||++||+||++||.+++.|+.+...+..
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~ 71 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRT 71 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999998444599999999999999999999999998876543
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.48 E-value=1.5e-14 Score=119.14 Aligned_cols=57 Identities=21% Similarity=0.416 Sum_probs=51.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 008631 373 TNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLS 429 (558)
Q Consensus 373 t~~HslaERrRReKINer~kaLq~LVP~~~K~tDKASILdeAI~YIK~LQ~QVe~Le 429 (558)
..+|+++||+||++||++|.+|++|||.+....||++||+.||+||+.||.++.-|+
T Consensus 9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 357999999999999999999999999865334999999999999999999987665
No 4
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.48 E-value=9.9e-15 Score=116.23 Aligned_cols=54 Identities=28% Similarity=0.437 Sum_probs=48.5
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhcCCCCCC-----CCCchhhHHHHHHHHHHHHHHH
Q 008631 372 ATNSHSLAERVRREKISERMKFLQDLVPGCSK-----VTGKAVMLDEIINYVQSLQRQV 425 (558)
Q Consensus 372 at~~HslaERrRReKINer~kaLq~LVP~~~K-----~tDKASILdeAI~YIK~LQ~QV 425 (558)
....|+++||+||++||+.|.+|++|||.|.. ..+|++||++||+||+.||.++
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 34579999999999999999999999999872 2499999999999999999875
No 5
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.48 E-value=5.1e-15 Score=118.73 Aligned_cols=53 Identities=28% Similarity=0.452 Sum_probs=47.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcCCCCCC------CCCchhhHHHHHHHHHHHHHHHH
Q 008631 374 NSHSLAERVRREKISERMKFLQDLVPGCSK------VTGKAVMLDEIINYVQSLQRQVE 426 (558)
Q Consensus 374 ~~HslaERrRReKINer~kaLq~LVP~~~K------~tDKASILdeAI~YIK~LQ~QVe 426 (558)
.+|+++||+||++||..|..|+.|||.|.+ ..+||+||+.||+||+.||++|+
T Consensus 4 ~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 4 ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 579999999999999999999999997743 23699999999999999998764
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.46 E-value=9.2e-15 Score=120.65 Aligned_cols=53 Identities=30% Similarity=0.495 Sum_probs=47.6
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHhhcCCCC----CCCCCchhhHHHHHHHHHHHHH
Q 008631 370 GQATNSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQR 423 (558)
Q Consensus 370 ~qat~~HslaERrRReKINer~kaLq~LVP~~----~K~tDKASILdeAI~YIK~LQ~ 423 (558)
.++...|+++||+||++||+.|.+|+.|||.| .|+ |||+||+.||+||+.||.
T Consensus 7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~Kl-dKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCC-CHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccc-cHHHHHHHHHHHHHHHhc
Confidence 34456899999999999999999999999988 565 999999999999999974
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.42 E-value=1.6e-13 Score=113.56 Aligned_cols=61 Identities=28% Similarity=0.476 Sum_probs=56.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008631 374 NSHSLAERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATV 435 (558)
Q Consensus 374 ~~HslaERrRReKINer~kaLq~LVP~~--~K~tDKASILdeAI~YIK~LQ~QVe~Le~k~aav 435 (558)
..|+.+||+||.+||+.|..|++|||.+ .|+ +|++||..||+||+.||.+++.|+.++..+
T Consensus 14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999987 465 999999999999999999999999887654
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.41 E-value=2.1e-13 Score=113.28 Aligned_cols=62 Identities=27% Similarity=0.473 Sum_probs=55.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 008631 374 NSHSLAERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVN 436 (558)
Q Consensus 374 ~~HslaERrRReKINer~kaLq~LVP~~--~K~tDKASILdeAI~YIK~LQ~QVe~Le~k~aavn 436 (558)
..|+.+||+||++||+.|..|+++||.+ .|. +|++||..||+||+.||.+++.|+.+...+.
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~ 67 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDLK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999985 665 9999999999999999999999988766543
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.36 E-value=6.2e-13 Score=112.67 Aligned_cols=59 Identities=27% Similarity=0.404 Sum_probs=53.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 008631 374 NSHSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLA 433 (558)
Q Consensus 374 ~~HslaERrRReKINer~kaLq~LVP~~---~K~tDKASILdeAI~YIK~LQ~QVe~Le~k~a 433 (558)
..|+.+||+||++||+.|..|+++||.+ .|. +|++||..||+||+.|+.+.+.|.....
T Consensus 8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~-sK~~iL~~A~~YI~~L~~~~~~l~~~~~ 69 (88)
T 1nkp_A 8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKA-PKVVILKKATAYILSVQAEEQKLISEED 69 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999986 465 9999999999999999999888776544
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.29 E-value=1.1e-12 Score=109.06 Aligned_cols=57 Identities=25% Similarity=0.355 Sum_probs=49.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHh
Q 008631 374 NSHSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVEFLSM 430 (558)
Q Consensus 374 ~~HslaERrRReKINer~kaLq~LVP~~---~K~tDKASILdeAI~YIK~LQ~QVe~Le~ 430 (558)
..|+..||+||++||+.|..|+++||.+ .|...|+.||..||+||++||++|++++.
T Consensus 7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3599999999999999999999999953 44336889999999999999999998764
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.17 E-value=3.7e-11 Score=100.41 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=53.8
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008631 375 SHSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATV 435 (558)
Q Consensus 375 ~HslaERrRReKINer~kaLq~LVP~~---~K~tDKASILdeAI~YIK~LQ~QVe~Le~k~aav 435 (558)
.|+..||+||..||+.|..|+++||.+ .|. .|+.||..||+||+.||.+.+.|..+...+
T Consensus 4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~-sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L 66 (80)
T 1nlw_A 4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRH-TTLSLLTKAKLHIKKLEDSDRKAVHQIDQL 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999965 454 799999999999999999999888776543
No 12
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.90 E-value=9.8e-10 Score=109.89 Aligned_cols=53 Identities=21% Similarity=0.403 Sum_probs=42.0
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhcCC-CCCCCCCchhhHHHHHHHHHHHHHHH
Q 008631 372 ATNSHSLAERVRREKISERMKFLQDLVP-GCSKVTGKAVMLDEIINYVQSLQRQV 425 (558)
Q Consensus 372 at~~HslaERrRReKINer~kaLq~LVP-~~~K~tDKASILdeAI~YIK~LQ~QV 425 (558)
+..+|+++||+||++||+.|.+|+.||| ...|+ ||++||..||.|||.|+...
T Consensus 12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~-dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKM-DKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCc-CHHHHHHHHHHHHHHHHhhc
Confidence 3457999999999999999999999999 45576 99999999999999998643
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.80 E-value=3.2e-09 Score=86.60 Aligned_cols=51 Identities=24% Similarity=0.398 Sum_probs=46.0
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHH
Q 008631 375 SHSLAERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQVE 426 (558)
Q Consensus 375 ~HslaERrRReKINer~kaLq~LVP~~--~K~tDKASILdeAI~YIK~LQ~QVe 426 (558)
.|+..||+|+..||+.|..|+++||.. .|+ .|..||..||+||+.||..++
T Consensus 15 ~aN~rER~R~~~iN~af~~LR~~iP~~~~~Kl-SKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 15 AATMRERRRLSKVNEAFETLKRSTSSNPNQRL-PKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCC-CHHHHHHHHHHHHHHHHHTTC
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CHHHHHHHHHHHHHHHHHHHc
Confidence 499999999999999999999999964 454 899999999999999998653
No 14
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.80 E-value=1.8e-09 Score=109.42 Aligned_cols=54 Identities=28% Similarity=0.399 Sum_probs=48.0
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHhhcCC----CCCCCCCchhhHHHHHHHHHHHHHH
Q 008631 370 GQATNSHSLAERVRREKISERMKFLQDLVP----GCSKVTGKAVMLDEIINYVQSLQRQ 424 (558)
Q Consensus 370 ~qat~~HslaERrRReKINer~kaLq~LVP----~~~K~tDKASILdeAI~YIK~LQ~Q 424 (558)
+++.++|+.+||+||+|||+.|.+|+.||| ...|+ ||++||..||.|||.|+..
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~-dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCC-CHHHHHHHHHHHHHHHHCC
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHhcCCCCcccccc-CHHHHHHHHHHHHHHhhcc
Confidence 344568999999999999999999999999 55676 9999999999999999843
No 15
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.76 E-value=7.2e-09 Score=82.54 Aligned_cols=52 Identities=23% Similarity=0.280 Sum_probs=46.0
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCCCCC--CCCCchhhHHHHHHHHHHHHHHHH
Q 008631 375 SHSLAERVRREKISERMKFLQDLVPGCS--KVTGKAVMLDEIINYVQSLQRQVE 426 (558)
Q Consensus 375 ~HslaERrRReKINer~kaLq~LVP~~~--K~tDKASILdeAI~YIK~LQ~QVe 426 (558)
.|+..||+|+..||+.|..|+++||... ++..|..+|..||+||+.||..++
T Consensus 5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4889999999999999999999999652 334899999999999999998764
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.58 E-value=4.3e-08 Score=83.23 Aligned_cols=64 Identities=30% Similarity=0.446 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhhcCCCCCC---CCCchhhHHHHHHHHHHHHHHHHHHH------hhhhhcCCCccchhhhhh
Q 008631 384 REKISERMKFLQDLVPGCSK---VTGKAVMLDEIINYVQSLQRQVEFLS------MKLATVNPRLDFNIEELL 447 (558)
Q Consensus 384 ReKINer~kaLq~LVP~~~K---~tDKASILdeAI~YIK~LQ~QVe~Le------~k~aavnp~l~~~ie~L~ 447 (558)
|..||++|++|..|||.++. ..+|++||..||+||+.||..++.+. .+++..|.++.+.+.+|.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqELE 76 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELE 76 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 88999999999999998742 23899999999999999998666554 334556666766666664
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.17 E-value=4.7e-07 Score=74.39 Aligned_cols=46 Identities=22% Similarity=0.421 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHH
Q 008631 377 SLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQR 423 (558)
Q Consensus 377 slaERrRReKINer~kaLq~LVP~~---~K~tDKASILdeAI~YIK~LQ~ 423 (558)
+..||+|+..||+.|..||++||.. .|+ .|..+|..||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKL-SKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQL-SQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCC-CHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCc-cHHHHHHHHHHHHHHHHc
Confidence 3568999999999999999999865 454 899999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.47 E-value=0.00017 Score=62.83 Aligned_cols=48 Identities=23% Similarity=0.346 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHHH
Q 008631 380 ERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQVEF 427 (558)
Q Consensus 380 ERrRReKINer~kaLq~LVP~~--~K~tDKASILdeAI~YIK~LQ~QVe~ 427 (558)
||.|=..||+-|..||.+||.. +|+..|..+|..||+||+.||..++.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 5778888999999999999964 33348999999999999999988765
No 19
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=42.55 E-value=46 Score=26.12 Aligned_cols=46 Identities=13% Similarity=0.188 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcCCCc
Q 008631 380 ERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRL 439 (558)
Q Consensus 380 ERrRReKINer~kaLq~LVP~~~K~tDKASILdeAI~YIK~LQ~QVe~Le~k~aavnp~l 439 (558)
||++|.+...++.+.+. . ..-.+|+..|+.+|+.|+.....+...+
T Consensus 1 Ekr~rrrerNR~AA~rc-----R---------~rKk~~~~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-----R---------NRRRELTDTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-----H---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-----H---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666554 1 2234677777777777777766655443
No 20
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=35.75 E-value=28 Score=27.66 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCccch
Q 008631 415 INYVQSLQRQVEFLSMKLATVNPRLDFN 442 (558)
Q Consensus 415 I~YIK~LQ~QVe~Le~k~aavnp~l~~~ 442 (558)
..||..|+.+|+.||..+..+.+..+++
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~~~~l~ 71 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFPREDLD 71 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchhhH
Confidence 3599999999999999999998877554
No 21
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=28.80 E-value=36 Score=26.18 Aligned_cols=21 Identities=10% Similarity=0.254 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhhhhhcC
Q 008631 416 NYVQSLQRQVEFLSMKLATVN 436 (558)
Q Consensus 416 ~YIK~LQ~QVe~Le~k~aavn 436 (558)
.||..|+.+|+.|+..+..+.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999887653
No 22
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=28.55 E-value=21 Score=27.28 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhhhhhcC
Q 008631 416 NYVQSLQRQVEFLSMKLATVN 436 (558)
Q Consensus 416 ~YIK~LQ~QVe~Le~k~aavn 436 (558)
.||..|+.+|+.|+..+..+.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLK 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 477777777777777766543
No 23
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=28.39 E-value=61 Score=25.50 Aligned_cols=27 Identities=19% Similarity=0.438 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 008631 377 SLAERVRREKISERMKFLQDLVPGCSK 403 (558)
Q Consensus 377 slaERrRReKINer~kaLq~LVP~~~K 403 (558)
.+++|-+|..-++-++.|+.+.|+..+
T Consensus 2 ~~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 2 SLIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 367899999999999999999999876
No 24
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=25.10 E-value=67 Score=24.89 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 008631 409 VMLDEIINYVQSLQRQVEFLSMKLATVNPR 438 (558)
Q Consensus 409 SILdeAI~YIK~LQ~QVe~Le~k~aavnp~ 438 (558)
..|++.++-+..|.++++.|+.++..+..+
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 469999999999999999999998877654
No 25
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=22.75 E-value=25 Score=26.61 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCcc
Q 008631 416 NYVQSLQRQVEFLSMKLATVNPRLD 440 (558)
Q Consensus 416 ~YIK~LQ~QVe~Le~k~aavnp~l~ 440 (558)
-|+-+|+.+++.|+.+.+.++.++.
T Consensus 3 aYl~eLE~r~k~le~~naeLEervs 27 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLS 27 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999998888777763
No 26
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=22.62 E-value=56 Score=25.27 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCC
Q 008631 416 NYVQSLQRQVEFLSMKLATVNPR 438 (558)
Q Consensus 416 ~YIK~LQ~QVe~Le~k~aavnp~ 438 (558)
.||..|+.+|..|+.++..+..+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~ 44 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEE 44 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888988888888877665443
No 27
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=22.27 E-value=44 Score=26.14 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhcC
Q 008631 415 INYVQSLQRQVEFLSMKLATVN 436 (558)
Q Consensus 415 I~YIK~LQ~QVe~Le~k~aavn 436 (558)
-.||..|+.+|+.||..+..+.
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3799999999999998776553
No 28
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=22.04 E-value=74 Score=26.93 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 008631 411 LDEIINYVQSLQRQVEFLSMKLATVNP 437 (558)
Q Consensus 411 LdeAI~YIK~LQ~QVe~Le~k~aavnp 437 (558)
++.||+-|.-||..|++|+.+...++.
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999998876544
No 29
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=21.34 E-value=95 Score=28.63 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHH
Q 008631 386 KISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSL 421 (558)
Q Consensus 386 KINer~kaLq~LVP~~---~K~tDKASILdeAI~YIK~L 421 (558)
.|.-.|..|+.+||.- ....-|-.||..|-+++..|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 4788999999999843 23337999999999998766
No 30
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=20.24 E-value=82 Score=25.33 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCC
Q 008631 415 INYVQSLQRQVEFLSMKLATVNP 437 (558)
Q Consensus 415 I~YIK~LQ~QVe~Le~k~aavnp 437 (558)
-.||+.|+.+|+.||..+..+..
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 35999999999999998877654
Done!