Query 008632
Match_columns 558
No_of_seqs 166 out of 2605
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 08:05:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008632.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008632hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 9E-31 3.1E-35 281.0 23.9 446 33-556 9-477 (491)
2 2xut_A Proton/peptide symporte 100.0 1.8E-29 6.1E-34 273.3 21.7 460 34-556 9-508 (524)
3 1pw4_A Glycerol-3-phosphate tr 100.0 1.8E-27 6.1E-32 251.8 22.8 399 36-552 27-435 (451)
4 3o7q_A L-fucose-proton symport 99.9 8.6E-26 2.9E-30 238.1 29.2 359 34-511 23-408 (438)
5 4gc0_A D-xylose-proton symport 99.9 2.1E-25 7.4E-30 238.9 22.5 406 71-558 53-470 (491)
6 2gfp_A EMRD, multidrug resista 99.9 1.7E-23 5.7E-28 216.3 14.8 344 42-509 5-351 (375)
7 2cfq_A Lactose permease; trans 99.9 5.7E-23 2E-27 216.2 8.8 394 36-555 6-404 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.4 9.2E-13 3.1E-17 138.6 14.2 180 35-242 250-432 (451)
9 3o7q_A L-fucose-proton symport 99.4 4.1E-12 1.4E-16 133.2 14.2 169 36-238 257-427 (438)
10 2cfq_A Lactose permease; trans 99.3 2.8E-12 9.6E-17 134.4 7.1 175 37-242 220-398 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.2 4.1E-11 1.4E-15 127.7 10.0 185 39-246 285-474 (491)
12 4gc0_A D-xylose-proton symport 99.0 4E-10 1.4E-14 119.9 9.3 182 37-245 276-464 (491)
13 2gfp_A EMRD, multidrug resista 98.9 1.3E-10 4.4E-15 119.3 1.0 164 37-230 199-363 (375)
14 2xut_A Proton/peptide symporte 98.2 6E-06 2.1E-10 88.3 12.1 138 364-550 56-198 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=9e-31 Score=280.98 Aligned_cols=446 Identities=18% Similarity=0.246 Sum_probs=294.5
Q ss_pred CCCcchhhHHHHHHHHHHHHhhhhHHHHHHHhccc-----cCCChHHHHHHHHHHHHHHHHHHHHHHHHhHh-hcchhHH
Q 008632 33 SGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQ-----LGESTATAAAAVNVWSGTASLLPLLGAFLADS-FLGRFRT 106 (558)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr-~~Grr~~ 106 (558)
++++|.++.+....++..+++|+....++.|++++ +|.+..+.+++.+.+.++..++.++.|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 34567788888899999999999999999999988 99999999999999999999999999999999 8 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChh
Q 008632 107 IVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQ 186 (558)
Q Consensus 107 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~ 186 (558)
+..+.++..++.+++.++++ .+.++++|+++|+|.+...+...++++|.+|++++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 143 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALPFG------------------------ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR 143 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCCS------------------------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH
T ss_pred HHHHHHHHHHHHHHHHHhhh------------------------HHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc
Confidence 99999999999988877644 778999999999999999999999999999987743
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCC--CCCCChhhHHHH
Q 008632 187 ERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIK--SKQRNPFARIGR 264 (558)
Q Consensus 187 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 264 (558)
|+.++++++.+.++|..++|.+++.+.+..||++.|++.++..+++.+.+....++..+++. +++....++..+
T Consensus 144 ----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (491)
T 4aps_A 144 ----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKP 219 (491)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHH
T ss_pred ----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHH
Confidence 77788889999999999999999999998999999998877766665555443333222111 110011122111
Q ss_pred HHHH--------------HHhhccccccchhhhhcccchh-hHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 008632 265 VFVV--------------AIKTRKATLASEDEAQSSQQFK-FLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWA 329 (558)
Q Consensus 265 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (558)
.... ........ .++..... .......... ....++.... ...++++.......+.
T Consensus 220 ~~~~~g~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~ 290 (491)
T 4aps_A 220 LLVKVSLAVAGFIAIIVVMNLVGWNS------LPAYINLLTIVAIAIPVFY--FAWMISSVKV-TSTEHLRVVSYIPLFI 290 (491)
T ss_dssp HHHHCCCCCHHHHHHHHHHHHHSSCC------TTHHHHHHHHHHHHHHHHH--HHHHC-------------CTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcc------cccchhhhhHHHHHHHHHH--HHHHhhcccc-cHHHHHHHHHHHHHHH
Confidence 1100 00000000 00000000 0000000000 0000000000 0112333333344444
Q ss_pred HHHHHHHHhhcccceeeeeccccCcccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHH
Q 008632 330 TCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAG 409 (558)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g 409 (558)
....++..+.+....+...... ..+ ......+.......+..++..++.+++.++++||. ....+.+..|
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~------~~~~~~~~~~ 360 (491)
T 4aps_A 291 AAVLFWAIEEQGSVVLATFAAE---RVD-SSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ------PSSPTKFAVG 360 (491)
T ss_dssp HHHHHHHHHGGGGTHHHHHHHH---SCC-CSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHH---Hhc-cCccCHHHHhccchHHHHHHHHHHHHHHHHHhccC------CCchHHHHHH
Confidence 4455555555555433222111 110 00134456667777888888888888878777664 2345567788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHH
Q 008632 410 MLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIY 489 (558)
Q Consensus 410 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~ 489 (558)
.++.++++++....... .+ ...+.+.++.++.+++.+++.+...+...+++.|..|++.|+.++|+.
T Consensus 361 ~~~~~~~~~~~~~~~~~-------~~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 427 (491)
T 4aps_A 361 LMFAGLSFLLMAIPGAL-------YG------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMW 427 (491)
T ss_dssp HHHHHHHHTTTHHHHHH-------CC------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHH
T ss_pred HHHHHHHHHHHHHHHHh-------cC------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHH
Confidence 88888888776654210 00 011245667777888889999988777888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008632 490 MSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNR 556 (558)
Q Consensus 490 ~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~ 556 (558)
++...+|..+++.+.+.+.+. ++...|.+++++++++.++.+++.++.++
T Consensus 428 ~~~~~~g~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 428 FLSSSVGSALNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHHHHHHHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877541 22346778888888888888877665543
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=1.8e-29 Score=273.27 Aligned_cols=460 Identities=25% Similarity=0.409 Sum_probs=284.5
Q ss_pred CCcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccC------CChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHH
Q 008632 34 GGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLG------ESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTI 107 (558)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~------~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~ 107 (558)
+++|.++.+....++.++++|+....++.|+++++| ++..+.+++.+.+.++..++.+++|+++||++|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~ 88 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI 88 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 345667778888899999999999999999999999 99999999999999999999999999999955999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChh
Q 008632 108 VVASLIYILGLSMMTLLA-LITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQ 186 (558)
Q Consensus 108 ~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~ 186 (558)
..+.++..++.+++.+++ + .+.++++|+++|++.+...+...++++|.+|+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-- 142 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIFEHS------------------------VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN-- 142 (524)
T ss_dssp HHHHHHHHHHHHHHHHTSSC------------------------HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT--
T ss_pred HHHHHHHHHHHHHHHHhccc------------------------HHHHHHHHHHHHHhccccchhHHHHHHHHcCccc--
Confidence 999999999998888764 3 7889999999999999999999999999999887
Q ss_pred hhhhhhhh---hhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHH
Q 008632 187 ERRAKSSF---FNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIG 263 (558)
Q Consensus 187 ~~~~r~~~---~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (558)
|++. +++++...++|..++|.+++.+.+..||++.|++.+++.+++.+.++..+++.+++++++ ++..+..
T Consensus 143 ----r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 216 (524)
T 2xut_A 143 ----KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEP--KDPHGFL 216 (524)
T ss_dssp ----TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC------------
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCC--ccchhHH
Confidence 7654 445888999999999999999998889999999888776666655554444333222221 1111111
Q ss_pred HHHHHHHhhccccccchh-------------hhhcccch---------hhHHhhhhcCCCCCCCCC-------CCCchhh
Q 008632 264 RVFVVAIKTRKATLASED-------------EAQSSQQF---------KFLNKALLATPDVSLEDG-------KLCTLED 314 (558)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~---------~~~~~~~~~~~~~~~~~~-------~~~~~~~ 314 (558)
+.+....++++....... ......+. .+....+. ...+| ..+....
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 291 (524)
T 2xut_A 217 PVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFV-----GAGASLQLERARKSHPDAA 291 (524)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHH-----HTGGGTHHHHSCCSCCSSS
T ss_pred HHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhccc-----ccchhhHHhhhhccccHhH
Confidence 111111111110000000 00000000 00000000 00000 0000001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCcccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccc
Q 008632 315 VEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFT 394 (558)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 394 (558)
.+++++.......+.....++..+.+....+..+....+.. .+ .+.+.....+.+..++..++.+++..+..+|+.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (524)
T 2xut_A 292 VDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP---QW-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMG 367 (524)
T ss_dssp STTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCC---SS-SCHHHHHTTSGGGHHHHGGGTTTC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCC---ee-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcC
Confidence 11233333344444444455555555554444332222111 00 245566667777788888888887644445542
Q ss_pred cCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 008632 395 QNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFY 474 (558)
Q Consensus 395 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~ 474 (558)
++ .+..+.+..|+++.++++++.+..... .......+.+++++.+++.+++.+...+...+++.
T Consensus 368 ~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 431 (524)
T 2xut_A 368 VK---LTALRKMGAGIAITGLSWIVVGTIQLM-------------MDGGSALSIFWQILPYALLTFGEVLVSATGLEFAY 431 (524)
T ss_dssp ------CCHHHHHTHHHHHHHHHHTTTTTTTT-------------TTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred CC---CChHHHHHHHHHHHHHHHHHHHHHHHH-------------hcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 334556677887777777665542100 00001235566777888999999998888889999
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccc-ccccchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 008632 475 DQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFAD-NLNRAHLDYFYWLLAALSAGGLLAFLYFAKS 553 (558)
Q Consensus 475 ~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~ 553 (558)
+..|++.||.++|+.++..++|+.+++.+.+.+.+..+ .+|.++ +. +.....|++.++++++++++++++.++
T Consensus 432 ~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (524)
T 2xut_A 432 SQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGM--SVTAFQMFFFAGFAILAAIVFALYARS 505 (524)
T ss_dssp HHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHS--CHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----ccccccccc--cccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999865321 123211 00 111233777888888888887777766
Q ss_pred ccc
Q 008632 554 YNR 556 (558)
Q Consensus 554 ~~~ 556 (558)
+++
T Consensus 506 ~~~ 508 (524)
T 2xut_A 506 YQM 508 (524)
T ss_dssp ---
T ss_pred hcc
Confidence 543
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.95 E-value=1.8e-27 Score=251.75 Aligned_cols=399 Identities=11% Similarity=0.005 Sum_probs=255.4
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYI 115 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 115 (558)
++.++.+....+......+.+.+.++.+ .+++ .+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 4455555556666666655565666554 5567 9999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHH----HHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhh
Q 008632 116 LGLSMMTL----LALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAK 191 (558)
Q Consensus 116 i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r 191 (558)
++.+++.+ +++ .+.++++|+++|++.+...+...++++|.+|+++ |
T Consensus 104 ~~~~~~~~~~~~~~~------------------------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r 153 (451)
T 1pw4_A 104 AVMLFMGFVPWATSS------------------------IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------R 153 (451)
T ss_dssp HHHHHHHHCHHHHSS------------------------SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------H
T ss_pred HHHHHHHhhhhcccc------------------------HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------h
Confidence 99999988 544 7789999999999999999999999999999887 9
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhheeccccc-chhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHH
Q 008632 192 SSFFNWWYFGISFGANSTILVVIYIQDNLN-WALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAI 270 (558)
Q Consensus 192 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (558)
++++++.+.+.++|..++|.+++++.+..| ||+.|++.+++.++..+..+...++.+++...++.+..++
T Consensus 154 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 224 (451)
T 1pw4_A 154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN--------- 224 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC---------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc---------
Confidence 999999999999999999999999888888 9999998887765554443333222111110000000000
Q ss_pred hhccccccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHH-HHHHHHHHHHHHHHHhhcccceeeeec
Q 008632 271 KTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALL-RLIPIWATCLVYAIVFAQYTTFFTKQG 349 (558)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (558)
+.+++. +. .. ......+........+.+.+. ..+..+.............+.++.
T Consensus 225 -------------~~~~~~---~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 280 (451)
T 1pw4_A 225 -------------DYPDDY---NE---KA--EQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLK--- 280 (451)
T ss_dssp -------------C---------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBT---
T ss_pred -------------cccccc---hh---hh--hcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 000000 00 00 000001000000000112222 222222222222222222222211
Q ss_pred cccCcccccccccChhhhhhhhHHHHHHHHhhhhhhhhhh--ccccccCCCCCChhhHHHHHHHHHH-HHHHHHHHHHHH
Q 008632 350 ATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPI--TRYFTQNPSGITMLQRIGAGMLLSS-ISMVVAALVEIK 426 (558)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~~~~g~~l~~-~~~~~~~~~~~~ 426 (558)
...+ .-....+.......+..++..++.+++.+++ .+|. .+..+..+.. ++++++...
T Consensus 281 ----~~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~--- 341 (451)
T 1pw4_A 281 ----EVKH-FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG-----------ATGVFFMTLVTIATIVYWMN--- 341 (451)
T ss_dssp ----TBSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH-----------HHHHHHHHHHHHHHHHTTSC---
T ss_pred ----HhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-----------hHHHHHHHHHHHHHHHHHHh---
Confidence 1111 0011223445555566666677777776665 3332 3444444443 444433321
Q ss_pred HHhhhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHH-HHHHHHHHHH
Q 008632 427 RLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGV-GGFLSSILVS 505 (558)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~-g~~ig~~~~~ 505 (558)
...+.+...+..++.+++.....+....+..+..|++.|+.++|+.++...+ |..+++.+.+
T Consensus 342 -----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g 404 (451)
T 1pw4_A 342 -----------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG 404 (451)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1124555666667777777777777778999999999999999999999999 9999999999
Q ss_pred HHhhhccCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 008632 506 IINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAK 552 (558)
Q Consensus 506 ~i~~~~~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~ 552 (558)
.+.+.. ++...|++.+++.+++.++.++..+
T Consensus 405 ~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 405 YTVDFF----------------GWDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHSS----------------CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhc----------------CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 997632 2345677788888877777766544
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.95 E-value=8.6e-26 Score=238.06 Aligned_cols=359 Identities=11% Similarity=0.056 Sum_probs=232.1
Q ss_pred CCcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHH
Q 008632 34 GGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLI 113 (558)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~ 113 (558)
++++.++.+....+...+......+.+ +++++++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~ 100 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILL-PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFL 100 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHH
Confidence 344455555555555555554444444 457789999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhh
Q 008632 114 YILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSS 193 (558)
Q Consensus 114 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 193 (558)
.+++.+++..... ..+.+.++++|+++|++.+...+...++++|.+|+++ |++
T Consensus 101 ~~~~~~~~~~~~~---------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~ 153 (438)
T 3o7q_A 101 YALGAALFWPAAE---------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHF 153 (438)
T ss_dssp HHHHHHHHHHHHH---------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHH
T ss_pred HHHHHHHHHhccc---------------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHH
Confidence 9999998843321 0338899999999999999999999999999999998 999
Q ss_pred hhhHHHHHHHHHHHhhhhhhheec-cccc-------------------------chhhhHHHHHHHHHHHHHHHHcCcce
Q 008632 194 FFNWWYFGISFGANSTILVVIYIQ-DNLN-------------------------WALGFGIPCAFMVAALVLFLLGTKTY 247 (558)
Q Consensus 194 ~~~~~~~~~~~g~~~~~~~~~~l~-~~~g-------------------------~~~~f~~~~~~~~~~~~~~~~~~~~~ 247 (558)
++++.+...++|..++|.+++.+. +..+ ||+.|++.+...++..+.++..+.
T Consensus 154 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-- 231 (438)
T 3o7q_A 154 RLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF-- 231 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--
Confidence 999999999999999999999987 5554 899997666655444444333211
Q ss_pred EEeCCCC-CCChhhHHHHHHHHHHhhccccccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHH
Q 008632 248 RFSIKSK-QRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIP 326 (558)
Q Consensus 248 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (558)
++.++++ +++...+..+.....++ +++.....+.
T Consensus 232 p~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~ 266 (438)
T 3o7q_A 232 PALQSDNHSDAKQGSFSASLSRLAR---------------------------------------------IRHWRWAVLA 266 (438)
T ss_dssp CCCTTTCCCCSSTTSHHHHHHHHTT---------------------------------------------CSHHHHHHHH
T ss_pred CcccccccccccccchhhhHHHHHh---------------------------------------------ChHHHHHHHH
Confidence 1111110 00000000000000000 0111111122
Q ss_pred HHHHHHHHHHHhhcccceeeeeccccCcccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHH
Q 008632 327 IWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRI 406 (558)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 406 (558)
.+...........+.+.++..+..+.+ ....+.......+..++..++.+++.+++.+| +.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~-----------~~~ 328 (438)
T 3o7q_A 267 QFCYVGAQTACWSYLIRYAVEEIPGMT-------AGFAANYLTGTMVCFFIGRFTGTWLISRFAPH-----------KVL 328 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH-----------HHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCcc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----------HHH
Confidence 222222222222222222111110111 11223344445555666666777776655444 346
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHH
Q 008632 407 GAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGL 486 (558)
Q Consensus 407 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~ 486 (558)
..+.++..+++++.... .+.+ .....++.+++.+...+...++..|..|++ ++.+.
T Consensus 329 ~~~~~~~~~~~~~~~~~----------------------~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~ 384 (438)
T 3o7q_A 329 AAYALIAMALCLISAFA----------------------GGHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGS 384 (438)
T ss_dssp HHHHHHHHHHHHHHHHC----------------------CHHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHH
T ss_pred HHHHHHHHHHHHHHHHc----------------------CCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchh
Confidence 66666666666555442 2222 233446677777777777888889999987 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 008632 487 SIYMSVLGVGGFLSSILVSIINEAT 511 (558)
Q Consensus 487 g~~~~~~~~g~~ig~~~~~~i~~~~ 511 (558)
++.. ...+|..++|.+.|.+.|..
T Consensus 385 ~~~~-~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 385 SFIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp HHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 9887 67799999999999998754
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.93 E-value=2.1e-25 Score=238.90 Aligned_cols=406 Identities=13% Similarity=0.090 Sum_probs=227.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchh
Q 008632 71 STATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQ 150 (558)
Q Consensus 71 s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (558)
++...+++.+.+.++..++.++.|+++||+ |||++++.+.+++.++.++++++.......... .........+
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~------~~~~~~~a~~ 125 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPD------NTVPVYLAGY 125 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSS------SSCCGGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcch------hHHHHHHhhh
Confidence 345678889999999999999999999999 999999999999999999998642100000000 0000000145
Q ss_pred HHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheeccc--------ccc
Q 008632 151 IIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN--------LNW 222 (558)
Q Consensus 151 ~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--------~g~ 222 (558)
.+.++++|+++|+|.|+..+..+.+++|..|+++ |++..++.+.+..+|..+++.++..+... .+|
T Consensus 126 ~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4gc0_A 126 VPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGW 199 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhh
Confidence 8899999999999999999999999999999988 99999999999999999988777655432 246
Q ss_pred hhhhHHHHHHHHHHHHHHHH--cCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccchhhhhcccchhhHHhhhhcCC
Q 008632 223 ALGFGIPCAFMVAALVLFLL--GTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATP 300 (558)
Q Consensus 223 ~~~f~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (558)
|..+.+..+..++..+..+. +.|++...+.+ .++..+.+....++.... .+..+..+..+..+....
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~-----~~~a~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 268 (491)
T 4gc0_A 200 RYMFASECIPALLFLMLLYTVPESPRWLMSRGK-----QEQAEGILRKIMGNTLAT------QAVQEIKHSLDHGRKTGG 268 (491)
T ss_dssp HHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTC-----HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHTT
T ss_pred HHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCc-----hhHHHHhHHHhcCCchhH------HHHHHHHHHHHhhhhhhh
Confidence 66665555443333322211 11111111111 112222221111110000 000000000000000000
Q ss_pred CCCCCCCCCCchhhHHHHHHHH-HHHHHHHHHHHHHHHhhcccceeeeeccccCcccccccccChhhhhhhhHHHHHHHH
Q 008632 301 DVSLEDGKLCTLEDVEEAKALL-RLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFI 379 (558)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (558)
......+++.. .....+..+.........+...+. ...+ ..............+..++..
T Consensus 269 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~ 329 (491)
T 4gc0_A 269 -----------RLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVF-------KTLG-ASTDIALLQTIIVGVINLTFT 329 (491)
T ss_dssp -----------HHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHH-------HHSS-CCHHHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHH-------HhcC-CCccchhhHHHHHHHHHHHHH
Confidence 00000011111 111111111110011111111111 0010 001111222333444455555
Q ss_pred hhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHH
Q 008632 380 PIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCG 459 (558)
Q Consensus 380 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 459 (558)
.+...+.++++||+ ....+...+.++++..+.... .....+..++...+..
T Consensus 330 ~~~~~l~dr~Grr~-----------~~~~~~~~~~~~~~~l~~~~~------------------~~~~~~~~~~~~~~~~ 380 (491)
T 4gc0_A 330 VLAIMTVDKFGRKP-----------LQIIGALGMAIGMFSLGTAFY------------------TQAPGIVALLSMLFYV 380 (491)
T ss_dssp HHHHHHHHHHCSHH-----------HHHHHHHHHHHHHHHHHHHHH------------------TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCcc-----------hhccchHHHHHHHHHHHHHHh------------------cccchHHHHHHHHHHH
Confidence 56666666667664 356666666666665554321 0112222233333333
Q ss_pred HHHHHH-hhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccchhHHHHHHHHH
Q 008632 460 IADVFT-IVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAA 538 (558)
Q Consensus 460 ~g~~~~-~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~~~~a~ 538 (558)
.+.... .+..+.+..|.+|++.|++++|+.+..+++++++++.+.+.+.+..... ...+....|+++++
T Consensus 381 ~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~----------~~~~~~~~~~i~~~ 450 (491)
T 4gc0_A 381 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLV----------AHFHNGFSYWIYGC 450 (491)
T ss_dssp HHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHH----------HHHTTCHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhhhhhHHHHHHHH
Confidence 333332 3555678999999999999999999999999999999998885421100 00112346888999
Q ss_pred HHHHHHHHHHHhhcccccCC
Q 008632 539 LSAGGLLAFLYFAKSYNREN 558 (558)
Q Consensus 539 ~~~i~~~~~~~~~~~~~~~~ 558 (558)
+++++.++.+++.||+|+|+
T Consensus 451 ~~~~~~i~~~~~~PETkg~t 470 (491)
T 4gc0_A 451 MGVLAALFMWKFVPETKGKT 470 (491)
T ss_dssp HHHHHHHHHHHHCCCCTTCC
T ss_pred HHHHHHHHHHheecCCCCCC
Confidence 99999999999999999874
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.90 E-value=1.7e-23 Score=216.30 Aligned_cols=344 Identities=10% Similarity=0.040 Sum_probs=226.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHH
Q 008632 42 IIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMM 121 (558)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~ 121 (558)
+....++..+....+.+.++. +.+++|.+..+.+++.+.+.+...++.++.|+++||+ |||++++.+.++..++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHH
Confidence 344455555555555566665 4568999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHH
Q 008632 122 TLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFG 201 (558)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 201 (558)
.++++ .+.+++.|+++|++.+...+...+++.|.+|+++ |++++++.+..
T Consensus 83 ~~~~~------------------------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 132 (375)
T 2gfp_A 83 VTTSS------------------------LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMG 132 (375)
T ss_dssp HHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHH
T ss_pred HHhcc------------------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHH
Confidence 88865 8889999999999999999999999999999888 99999999999
Q ss_pred HHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccchh
Q 008632 202 ISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASED 281 (558)
Q Consensus 202 ~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (558)
.++|..++|.+++.+.+..|||+.|++.++..++..+......| +++++++ +. +
T Consensus 133 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~--------------~-------- 186 (375)
T 2gfp_A 133 ILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMP---ETRPVDA-PR--------------T-------- 186 (375)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSC---CCSTTTC-CC--------------C--------
T ss_pred HHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCc---ccCCCCc-cc--------------c--------
Confidence 99999999999999999889999998777665544432222111 1111110 00 0
Q ss_pred hhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCcccccccc
Q 008632 282 EAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIK 361 (558)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (558)
+ ...++ .+..++++.....+..+.............+.++.+ ..+.+ .
T Consensus 187 -----~---------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~-------~ 234 (375)
T 2gfp_A 187 -----R---------------LLTSY----KTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGA-VLGLS-------S 234 (375)
T ss_dssp -----C---------------TTTCS----THHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHH-HHHHH-------H
T ss_pred -----c---------------HHHHH----HHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCC-------H
Confidence 0 00001 111112222222222222222222222222222211 01100 1
Q ss_pred cChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHH-HHHHHH--HHHHHHHHHHhhhhhhccCC
Q 008632 362 IPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLL-SSISMV--VAALVEIKRLETAKEYGLID 438 (558)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l-~~~~~~--~~~~~~~~~~~~~~~~~~~~ 438 (558)
...+.......+..++..++.+++ .||.. + ....+..+ ...+.. ......
T Consensus 235 ~~~g~~~~~~~~~~~~~~~~~~~l----~~r~~-------~--~~~~~~~~~~~~~~~~~~~~~~~-------------- 287 (375)
T 2gfp_A 235 MTVSILFILPIPAAFFGAWFAGRP----NKRFS-------T--LMWQSVICCLLAGLLMWIPDWFG-------------- 287 (375)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTT----TTHHH-------H--HHHHHHHHHHHTSSSSSHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-------H--HHHHHHHHHHHHHHHHHHHhhhc--------------
Confidence 112333444445555555555554 33321 1 13333333 222222 122111
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008632 439 KPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE 509 (558)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~ 509 (558)
..+.+...+..++.+++.+...+....+..|..| +.|+++.|+.+....+|..+++.+.+.+.+
T Consensus 288 ------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 351 (375)
T 2gfp_A 288 ------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQ 351 (375)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHH
T ss_pred ------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1244556666778888888888888889999998 889999999999999999999988888754
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.87 E-value=5.7e-23 Score=216.15 Aligned_cols=394 Identities=12% Similarity=0.027 Sum_probs=222.2
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYI 115 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 115 (558)
.|..+.+....++...++..+.++++.|+++++|++..+.+++.+.+.++..+++++.|+++||+ |||++++.+.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~ 84 (417)
T 2cfq_A 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGML 84 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 34555555555555566666778999999999999999999999999999999999999999999 99999998887765
Q ss_pred HHHHHH---HHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhh
Q 008632 116 LGLSMM---TLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKS 192 (558)
Q Consensus 116 i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 192 (558)
++.... .+.... ...+..++.+.+++.+...+.......+..++.. +.++
T Consensus 85 ~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~ 137 (417)
T 2cfq_A 85 VMFAPFFIFIFGPLL-----------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSN 137 (417)
T ss_dssp SCHHHHHHHTHHHHH-----------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHT
T ss_pred HHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcc
Confidence 532211 121110 0112344555555555544444444444433211 1267
Q ss_pred hhhhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhh
Q 008632 193 SFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKT 272 (558)
Q Consensus 193 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (558)
..++..+...++|..++|.+++++.+ .+|+..|++.++..++..+......+ +++++.+...+
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------------ 200 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKT----DAPSSATVANA------------ 200 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCC----CCSCSSCSSSS------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCc----ccccccccccc------------
Confidence 77777777788999999999998876 58999988766543333322211111 11110000000
Q ss_pred ccccccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeecccc
Q 008632 273 RKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATM 352 (558)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (558)
. ..+.++.+. .. + .+..++++.....+..+.....+....++.+.++... .
T Consensus 201 ~---------~~~~~~~~~-~~------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 251 (417)
T 2cfq_A 201 V---------GANHSAFSL-KL------------A----LELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF---F 251 (417)
T ss_dssp S---------SSCCCCCCH-HH------------H----HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---S
T ss_pred c---------ccccccccH-HH------------H----HHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 0 000000000 00 0 0000011111111111111111122112222222110 0
Q ss_pred Cc-ccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008632 353 DR-TITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETA 431 (558)
Q Consensus 353 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 431 (558)
.. ..+ ....+.....+.+..++..++.+++.||+++|+ .+..+.++.+++++..+..
T Consensus 252 ~~~~~~---~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----------~l~~~~~~~~~~~~~~~~~-------- 309 (417)
T 2cfq_A 252 ATGEQG---TRVFGYVTTMGELLNASIMFFAPLIINRIGGKN-----------ALLLAGTIMSVRIIGSSFA-------- 309 (417)
T ss_dssp SSHHHH---THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-----------HHHHHHHHHHHHHHHHTTC--------
T ss_pred hccCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH-----------HHHHHHHHHHHHHHHHHHh--------
Confidence 00 000 001123334444455555666667766665553 4556666666655444321
Q ss_pred hhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhh
Q 008632 432 KEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSI-YMSVLGVGGFLSSILVSIINEA 510 (558)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~~g~~ig~~~~~~i~~~ 510 (558)
.+.+.+++...+.+++.....+....++.|..|++.||++.++ +++.+.+|+.++|.+.|.+.+.
T Consensus 310 --------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~ 375 (417)
T 2cfq_A 310 --------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES 375 (417)
T ss_dssp --------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH
T ss_pred --------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh
Confidence 2333444444555666555555556789999999999999999 4888899999999999988652
Q ss_pred ccCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008632 511 TSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYN 555 (558)
Q Consensus 511 ~~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~ 555 (558)
.++...|.+.+++++++.+..++..|+.+
T Consensus 376 ----------------~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 376 ----------------IGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp ----------------SHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred ----------------cCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 12345677888888888877777666544
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.42 E-value=9.2e-13 Score=138.56 Aligned_cols=180 Identities=14% Similarity=0.078 Sum_probs=147.6
Q ss_pred CcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhc-chhHHHHHHHHH
Q 008632 35 GWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFL-GRFRTIVVASLI 113 (558)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grr~~~~~~~~~ 113 (558)
+.|.++......++..+.++++..+++.|+++.+|.+..+.+++.+...++..++.++.|+++||+. |||+.+..+.++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 250 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMT 329 (451)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 3466777777777888888889999999999989999999999999999999999999999999942 788887777665
Q ss_pred HH-HHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhh
Q 008632 114 YI-LGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKS 192 (558)
Q Consensus 114 ~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 192 (558)
.. ++.+++.+..+ .+.+.+.+..++.|++.+...+....++.|.+|++. |+
T Consensus 330 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g 381 (451)
T 1pw4_A 330 LVTIATIVYWMNPA----------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AG 381 (451)
T ss_dssp HHHHHHHHTTSCCT----------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HH
T ss_pred HHHHHHHHHHHhcc----------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hh
Confidence 55 55544443211 235667777888899888888888899999999887 99
Q ss_pred hhhhHHHHHHHH-HHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHH
Q 008632 193 SFFNWWYFGISF-GANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLL 242 (558)
Q Consensus 193 ~~~~~~~~~~~~-g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 242 (558)
++.++++...++ |..++|.+.|.+.+..||+..|++.+++.+++.+..+.
T Consensus 382 ~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 382 TAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999998887776666555443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.36 E-value=4.1e-12 Score=133.17 Aligned_cols=169 Identities=14% Similarity=0.074 Sum_probs=135.5
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHH-hccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITY-LTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIY 114 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 114 (558)
.|.++......++.....+.+..+++.| +++.+|.+..+.+++.+...++..++.++.|+++||+ |||+.+..+.++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIA 335 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 4556666666666777777888999999 8988999999999999999999999999999999998 9999999998888
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhh
Q 008632 115 ILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF 194 (558)
Q Consensus 115 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 194 (558)
.++.++..+.++ .+. .+..++.+++.+...+...++..|.+|++ ++.+
T Consensus 336 ~~~~~~~~~~~~------------------------~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~ 383 (438)
T 3o7q_A 336 MALCLISAFAGG------------------------HVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYG 383 (438)
T ss_dssp HHHHHHHHHCCH------------------------HHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHH
T ss_pred HHHHHHHHHcCC------------------------cHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccch
Confidence 888777766533 333 33447788888888899999989998843 5555
Q ss_pred hhHHHHHHHHHHHhhhhhhheeccccc-chhhhHHHHHHHHHHHH
Q 008632 195 FNWWYFGISFGANSTILVVIYIQDNLN-WALGFGIPCAFMVAALV 238 (558)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~ 238 (558)
.++.. ...+|..++|.+.|.+.+..| ++..|++.+++.++..+
T Consensus 384 ~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 384 SSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 55555 456999999999999999888 99999877655444433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.28 E-value=2.8e-12 Score=134.36 Aligned_cols=175 Identities=6% Similarity=0.048 Sum_probs=125.7
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCC---ChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGE---STATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLI 113 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~ 113 (558)
|.++......+.....++....+++.|+++.++. +....++..+...+...++.++.|+++||+ |||+++..+.++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~ 298 (417)
T 2cfq_A 220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHH
Confidence 3444444333333344555556688888766653 234556677777778888899999999999 999999888877
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhh
Q 008632 114 YILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSS 193 (558)
Q Consensus 114 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 193 (558)
.+++.++..+.++ .+.+++..++.+++.+...+....+.+|.+|++. |++
T Consensus 299 ~~~~~~~~~~~~~------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~ 348 (417)
T 2cfq_A 299 MSVRIIGSSFATS------------------------ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SAT 348 (417)
T ss_dssp HHHHHHHHTTCCS------------------------HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHH
T ss_pred HHHHHHHHHHhcc------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHH
Confidence 7776555543322 4555566666677666666666789999999877 999
Q ss_pred hhhH-HHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHH
Q 008632 194 FFNW-WYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLL 242 (558)
Q Consensus 194 ~~~~-~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 242 (558)
+.++ ++....+|+.++|.++|.+.+..|+...|.+.+++.+++.+..+.
T Consensus 349 ~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 349 IYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 9888 577788999999999999988888888888777776666555433
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.18 E-value=4.1e-11 Score=127.73 Aligned_cols=185 Identities=13% Similarity=0.039 Sum_probs=134.4
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHH-----HHHHH
Q 008632 39 ASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIV-----VASLI 113 (558)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~-----~~~~~ 113 (558)
.+......++....+......++.|+++.++.+..+.+++.....+...++.++.|+++||+ |||+... .+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 34444444555556666778888999988888877778888888888889999999999998 9986654 66667
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhh
Q 008632 114 YILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSS 193 (558)
Q Consensus 114 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 193 (558)
.+++.+++.+..... + ++...+.+.+.+..++.|++.+...+....++.|.+|++. |++
T Consensus 364 ~~~~~~~~~~~~~~~--------~-------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~ 422 (491)
T 4aps_A 364 AGLSFLLMAIPGALY--------G-------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQ 422 (491)
T ss_dssp HHHHHTTTHHHHHHC--------C-------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSS
T ss_pred HHHHHHHHHHHHHhc--------C-------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHH
Confidence 777766666543200 0 0001235667777888999999989999999999999998 999
Q ss_pred hhhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcc
Q 008632 194 FFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKT 246 (558)
Q Consensus 194 ~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 246 (558)
+.++++...++|..+++.+.+.+.+. ++...|.+.+.+.+++.+..+...++
T Consensus 423 ~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 423 MMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp STHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988764 56667776666655555555544443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.03 E-value=4e-10 Score=119.91 Aligned_cols=182 Identities=12% Similarity=0.087 Sum_probs=122.3
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYIL 116 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i 116 (558)
+.........++..+..+........++.+..+.+............+...++.++++++.||+ |||+.++.+.....+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAI 354 (491)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHH
Confidence 4444444444554444444444445556667888888888777888888999999999999999 999999999888888
Q ss_pred HHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHH-HHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhh
Q 008632 117 GLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQII-VFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFF 195 (558)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 195 (558)
+.+.+....... ..... ......+..+.+. +..+....+.+|.+|.+. |+++.
T Consensus 355 ~~~~l~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~------R~~~~ 408 (491)
T 4gc0_A 355 GMFSLGTAFYTQ-------------------APGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI------RGKAL 408 (491)
T ss_dssp HHHHHHHHHHTT-------------------CCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT------HHHHH
T ss_pred HHHHHHHHHhcc-------------------cchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH------HHHHH
Confidence 777766553310 01111 1222222222222 234667788999999999 99999
Q ss_pred hHHHHHHHHHHHhhhhhhheecc------cccchhhhHHHHHHHHHHHHHHHHcCc
Q 008632 196 NWWYFGISFGANSTILVVIYIQD------NLNWALGFGIPCAFMVAALVLFLLGTK 245 (558)
Q Consensus 196 ~~~~~~~~~g~~~~~~~~~~l~~------~~g~~~~f~~~~~~~~~~~~~~~~~~~ 245 (558)
++.+....+|+.+++.+.+.+.+ ..++...|++.+++.+++.+..++..|
T Consensus 409 g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~P 464 (491)
T 4gc0_A 409 AIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 464 (491)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheec
Confidence 99998889999998888776643 234556677766666666555544444
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.93 E-value=1.3e-10 Score=119.26 Aligned_cols=164 Identities=10% Similarity=-0.012 Sum_probs=126.0
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHH-HH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLI-YI 115 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~-~~ 115 (558)
|.++......++.....+.+..++|.|+++.+|.+..+.+++.+...++..++.++.|+++||+ ||+ . ..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~-~-~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL-M-WQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH-H-HHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-H-HHHHHHHHH
Confidence 5566666666777777788888899999988999999999999999999999999999999998 883 2 223322 22
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhh
Q 008632 116 LGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFF 195 (558)
Q Consensus 116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 195 (558)
.+..+....... ..+.+.+++..++.+++.+...+...++..|.+| ++ |+++.
T Consensus 276 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~ 328 (375)
T 2gfp_A 276 AGLLMWIPDWFG--------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAG 328 (375)
T ss_dssp TSSSSSHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHH
T ss_pred HHHHHHHHhhhc--------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHH
Confidence 222221221100 0235667777888899999999999999999988 55 99999
Q ss_pred hHHHHHHHHHHHhhhhhhheecccccchhhhHHHH
Q 008632 196 NWWYFGISFGANSTILVVIYIQDNLNWALGFGIPC 230 (558)
Q Consensus 196 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~ 230 (558)
++.+...++|..++|.+.+.+.+..+++..+.+..
T Consensus 329 g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 329 ALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 99999999999999999999988777877776544
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.21 E-value=6e-06 Score=88.28 Aligned_cols=138 Identities=16% Similarity=0.100 Sum_probs=100.4
Q ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhh-ccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCC
Q 008632 364 AASLQLFIGIGIITFIPIYDCIFVPI-TRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNV 442 (558)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (558)
.+.......+...+..++.+++.|++ +||+ .+..+.++..++.++.+..
T Consensus 56 ~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~-----------~~~~~~~~~~~~~~~~~~~------------------- 105 (524)
T 2xut_A 56 AKDVFHSFVIGVYFFPLLGGWIADRFFGKYN-----------TILWLSLIYCVGHAFLAIF------------------- 105 (524)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH-----------HHHHHHHHHHHHHHHHHHT-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----------HHHHHHHHHHHHHHHHHHh-------------------
Confidence 34455556666667777778877766 5553 4677777777777766653
Q ss_pred Cccc-hhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 008632 443 TIPT-SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSI---YMSVLGVGGFLSSILVSIINEATSRDGGDS 518 (558)
Q Consensus 443 ~~~~-~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~---~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~ 518 (558)
. +.+.+++..++.|++.+...+...+++.|.+|++.|+...+. .+....+|..+++.+.+.+.+. .+
T Consensus 106 ---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~------~g 176 (524)
T 2xut_A 106 ---EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN------FG 176 (524)
T ss_dssp ---SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT------SC
T ss_pred ---cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cc
Confidence 3 566777788889999998888888999999999999877666 8888999999999988888642 12
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHh
Q 008632 519 WFADNLNRAHLDYFYWLLAALSAGGLLAFLYF 550 (558)
Q Consensus 519 w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~ 550 (558)
| ++.|++.+.+.+++.++.++.
T Consensus 177 ~----------~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 177 A----------AVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp H----------HHHHHHHHHHHHHHHHHHHSS
T ss_pred H----------HHHHHHHHHHHHHHHHHHHHh
Confidence 3 456777777766665555443
Done!