Query 008633
Match_columns 558
No_of_seqs 829 out of 2875
Neff 10.7
Searched_HMMs 46136
Date Thu Mar 28 14:37:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008633.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008633hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 3.5E-62 7.6E-67 523.5 58.6 445 101-551 371-851 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 6.1E-62 1.3E-66 521.6 56.1 416 129-550 374-792 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 2.4E-60 5.3E-65 506.7 48.8 439 97-552 120-568 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 1.6E-57 3.5E-62 496.5 48.4 433 97-547 184-657 (857)
5 PLN03077 Protein ECB2; Provisi 100.0 3.4E-57 7.3E-62 493.9 44.2 440 97-550 83-628 (857)
6 PLN03081 pentatricopeptide (PP 100.0 3.7E-56 7.9E-61 474.6 44.0 404 125-546 119-526 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 8E-24 1.7E-28 235.8 54.2 367 163-539 499-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.8E-23 6.1E-28 231.4 52.9 369 160-539 462-830 (899)
9 PRK11788 tetratricopeptide rep 99.9 7.1E-22 1.5E-26 197.9 36.9 308 243-556 45-362 (389)
10 PRK11788 tetratricopeptide rep 99.9 1.1E-20 2.3E-25 189.4 36.4 301 170-511 42-352 (389)
11 KOG4626 O-linked N-acetylgluco 99.9 5.3E-20 1.1E-24 176.4 32.2 374 160-549 113-491 (966)
12 PRK15174 Vi polysaccharide exp 99.9 2.2E-18 4.7E-23 181.3 45.3 331 167-506 46-381 (656)
13 TIGR00990 3a0801s09 mitochondr 99.9 1.4E-17 3.1E-22 175.8 49.7 367 166-541 130-571 (615)
14 PRK15174 Vi polysaccharide exp 99.9 1.8E-17 3.9E-22 174.5 44.5 336 197-541 41-381 (656)
15 PRK11447 cellulose synthase su 99.9 1.5E-16 3.3E-21 178.9 54.7 383 144-539 286-738 (1157)
16 PRK11447 cellulose synthase su 99.9 1.1E-16 2.4E-21 180.0 51.9 367 169-542 275-701 (1157)
17 PRK10049 pgaA outer membrane p 99.8 2E-16 4.3E-21 170.2 44.0 372 160-541 46-456 (765)
18 TIGR00990 3a0801s09 mitochondr 99.8 3.7E-16 7.9E-21 165.1 44.3 347 200-554 129-548 (615)
19 KOG4626 O-linked N-acetylgluco 99.8 6.6E-17 1.4E-21 155.4 31.6 357 171-540 90-450 (966)
20 PRK10049 pgaA outer membrane p 99.8 1.7E-15 3.7E-20 163.0 43.1 381 160-551 12-430 (765)
21 PRK14574 hmsH outer membrane p 99.8 6.8E-14 1.5E-18 148.0 47.5 385 144-539 51-511 (822)
22 KOG4422 Uncharacterized conser 99.8 2E-13 4.3E-18 126.3 42.1 238 161-402 205-463 (625)
23 KOG4422 Uncharacterized conser 99.7 8.8E-14 1.9E-18 128.6 36.5 405 130-543 120-592 (625)
24 PRK14574 hmsH outer membrane p 99.7 1.1E-12 2.3E-17 139.0 49.9 350 164-520 103-525 (822)
25 PRK09782 bacteriophage N4 rece 99.7 5.6E-12 1.2E-16 136.4 51.0 383 158-553 242-716 (987)
26 PRK09782 bacteriophage N4 rece 99.7 2.6E-12 5.6E-17 138.9 44.8 352 176-540 355-739 (987)
27 PRK10747 putative protoheme IX 99.6 1.9E-12 4.1E-17 128.7 35.6 283 246-539 97-388 (398)
28 KOG2076 RNA polymerase III tra 99.6 1E-11 2.2E-16 125.6 40.1 373 164-539 140-553 (895)
29 TIGR00540 hemY_coli hemY prote 99.6 2.5E-12 5.4E-17 128.6 34.9 291 246-539 97-397 (409)
30 KOG2002 TPR-containing nuclear 99.6 4.8E-12 1E-16 128.7 35.9 377 160-540 267-744 (1018)
31 COG2956 Predicted N-acetylgluc 99.6 5.3E-12 1.2E-16 113.1 31.2 302 246-556 48-362 (389)
32 PRK10747 putative protoheme IX 99.6 1.6E-11 3.4E-16 122.2 36.2 291 176-505 97-389 (398)
33 KOG2076 RNA polymerase III tra 99.6 2.9E-11 6.2E-16 122.4 37.4 332 203-539 144-510 (895)
34 TIGR00540 hemY_coli hemY prote 99.6 1.5E-11 3.3E-16 123.0 35.9 301 166-504 85-397 (409)
35 PF13429 TPR_15: Tetratricopep 99.6 1.1E-14 2.4E-19 138.2 12.6 261 272-539 13-275 (280)
36 KOG2002 TPR-containing nuclear 99.6 9.4E-11 2E-15 119.6 40.9 407 139-557 142-574 (1018)
37 PF13429 TPR_15: Tetratricopep 99.6 2.4E-14 5.2E-19 136.0 12.0 17 170-186 15-31 (280)
38 KOG1155 Anaphase-promoting com 99.5 1.7E-10 3.6E-15 108.5 35.8 362 160-539 161-534 (559)
39 KOG2003 TPR repeat-containing 99.5 6.2E-11 1.3E-15 110.7 31.3 374 144-527 254-709 (840)
40 COG2956 Predicted N-acetylgluc 99.5 8E-11 1.7E-15 105.7 30.6 289 175-469 47-345 (389)
41 COG3071 HemY Uncharacterized e 99.5 1.8E-10 3.9E-15 106.6 33.7 289 247-545 98-394 (400)
42 KOG2003 TPR repeat-containing 99.5 8.3E-11 1.8E-15 109.9 31.5 217 279-503 502-719 (840)
43 COG3071 HemY Uncharacterized e 99.5 6.9E-10 1.5E-14 102.9 36.1 303 167-506 86-390 (400)
44 KOG0495 HAT repeat protein [RN 99.5 4.2E-09 9E-14 103.2 43.0 305 157-468 434-779 (913)
45 KOG0495 HAT repeat protein [RN 99.5 2E-09 4.4E-14 105.3 40.5 337 199-551 551-888 (913)
46 KOG1126 DNA-binding cell divis 99.5 8.5E-12 1.8E-16 122.4 24.5 282 248-540 334-619 (638)
47 KOG1155 Anaphase-promoting com 99.5 1.7E-09 3.6E-14 101.9 36.9 312 204-541 233-553 (559)
48 KOG1126 DNA-binding cell divis 99.5 4.5E-11 9.7E-16 117.4 25.8 284 213-507 334-621 (638)
49 KOG1915 Cell cycle control pro 99.4 3.4E-08 7.3E-13 93.4 41.2 372 161-542 105-537 (677)
50 KOG0547 Translocase of outer m 99.4 4E-09 8.6E-14 100.0 35.3 219 314-539 338-564 (606)
51 KOG1915 Cell cycle control pro 99.4 2.6E-08 5.7E-13 94.1 40.2 388 139-539 154-583 (677)
52 KOG4318 Bicoid mRNA stability 99.4 3.2E-11 7E-16 121.4 20.0 273 184-492 11-286 (1088)
53 KOG4318 Bicoid mRNA stability 99.4 4.7E-11 1E-15 120.3 21.0 338 154-539 16-368 (1088)
54 TIGR02521 type_IV_pilW type IV 99.4 8.2E-10 1.8E-14 101.8 27.1 200 337-540 31-231 (234)
55 PRK12370 invasion protein regu 99.4 1.7E-09 3.8E-14 112.4 31.5 147 249-398 320-467 (553)
56 TIGR02521 type_IV_pilW type IV 99.3 1.3E-09 2.9E-14 100.4 26.8 94 163-258 31-124 (234)
57 PF13041 PPR_2: PPR repeat fam 99.3 3.7E-12 8E-17 85.2 6.6 50 265-314 1-50 (50)
58 PRK12370 invasion protein regu 99.3 1.5E-09 3.2E-14 112.9 28.4 181 318-505 320-501 (553)
59 PF13041 PPR_2: PPR repeat fam 99.3 5.2E-12 1.1E-16 84.5 6.2 50 161-210 1-50 (50)
60 KOG0547 Translocase of outer m 99.3 6.2E-08 1.3E-12 92.1 35.0 364 143-522 131-577 (606)
61 KOG1156 N-terminal acetyltrans 99.3 1.4E-07 3.1E-12 92.8 37.8 369 161-543 73-470 (700)
62 KOG1840 Kinesin light chain [C 99.3 5.4E-09 1.2E-13 103.9 28.1 237 303-539 200-477 (508)
63 PF12569 NARP1: NMDA receptor- 99.2 1.1E-07 2.4E-12 95.8 36.1 292 169-469 10-332 (517)
64 KOG1129 TPR repeat-containing 99.2 1.5E-09 3.4E-14 97.6 19.9 234 267-506 223-458 (478)
65 PF12569 NARP1: NMDA receptor- 99.2 3.9E-08 8.5E-13 99.1 32.4 127 411-539 198-332 (517)
66 KOG1129 TPR repeat-containing 99.2 1.3E-09 2.8E-14 98.0 18.9 226 169-399 229-456 (478)
67 KOG1173 Anaphase-promoting com 99.2 7.8E-08 1.7E-12 93.2 30.6 272 266-546 243-521 (611)
68 KOG1173 Anaphase-promoting com 99.2 8.8E-08 1.9E-12 92.8 29.0 282 232-520 243-530 (611)
69 KOG1174 Anaphase-promoting com 99.2 2.1E-07 4.6E-12 86.7 30.2 309 194-511 190-503 (564)
70 KOG2047 mRNA splicing factor [ 99.1 3.2E-06 7E-11 83.3 38.8 202 338-541 388-615 (835)
71 KOG1840 Kinesin light chain [C 99.1 3.2E-08 6.8E-13 98.5 25.9 97 198-294 199-310 (508)
72 KOG1174 Anaphase-promoting com 99.1 2.8E-06 6.1E-11 79.4 34.9 309 230-550 191-507 (564)
73 cd05804 StaR_like StaR_like; a 99.1 8.5E-07 1.8E-11 87.6 34.7 92 307-399 119-213 (355)
74 KOG1156 N-terminal acetyltrans 99.1 4.5E-06 9.8E-11 82.6 36.4 385 145-542 25-435 (700)
75 PRK11189 lipoprotein NlpI; Pro 99.1 2.7E-07 5.8E-12 88.0 27.9 217 282-507 41-266 (296)
76 cd05804 StaR_like StaR_like; a 99.0 2.1E-06 4.6E-11 84.8 34.8 302 235-541 8-336 (355)
77 PRK11189 lipoprotein NlpI; Pro 99.0 4.8E-07 1E-11 86.2 27.6 218 177-402 40-266 (296)
78 KOG4162 Predicted calmodulin-b 99.0 6.7E-06 1.5E-10 83.0 35.9 375 159-541 319-783 (799)
79 KOG2376 Signal recognition par 99.0 1E-05 2.2E-10 79.3 36.0 121 412-536 381-515 (652)
80 PRK04841 transcriptional regul 99.0 3.2E-06 7E-11 94.6 38.3 338 207-544 383-763 (903)
81 KOG3785 Uncharacterized conser 99.0 2.7E-06 5.9E-11 77.9 29.7 391 132-546 29-495 (557)
82 COG3063 PilF Tfp pilus assembl 99.0 7.2E-07 1.6E-11 77.1 24.6 124 170-295 42-167 (250)
83 COG3063 PilF Tfp pilus assembl 99.0 9.1E-07 2E-11 76.5 24.9 193 308-504 41-234 (250)
84 KOG2047 mRNA splicing factor [ 99.0 2.1E-05 4.5E-10 77.9 37.2 371 167-548 142-585 (835)
85 KOG4162 Predicted calmodulin-b 98.9 8.3E-06 1.8E-10 82.4 33.6 355 193-555 318-761 (799)
86 KOG4340 Uncharacterized conser 98.9 7.5E-07 1.6E-11 79.6 21.9 336 192-539 4-373 (459)
87 KOG0548 Molecular co-chaperone 98.9 8E-06 1.7E-10 79.2 29.3 219 306-540 228-454 (539)
88 KOG4340 Uncharacterized conser 98.9 2.2E-06 4.8E-11 76.7 23.5 327 166-504 13-373 (459)
89 KOG0624 dsRNA-activated protei 98.9 2.5E-05 5.4E-10 71.5 30.3 314 162-506 37-370 (504)
90 KOG0985 Vesicle coat protein c 98.8 9.4E-05 2E-09 76.9 36.0 333 161-537 982-1337(1666)
91 PRK04841 transcriptional regul 98.8 3E-05 6.4E-10 86.9 36.1 334 174-507 385-761 (903)
92 PF04733 Coatomer_E: Coatomer 98.8 5E-07 1.1E-11 84.9 17.4 248 243-506 11-265 (290)
93 PLN02789 farnesyltranstransfer 98.8 1.5E-05 3.2E-10 76.1 27.3 247 269-552 39-311 (320)
94 PF04733 Coatomer_E: Coatomer 98.7 5.8E-07 1.3E-11 84.5 17.1 246 174-435 12-264 (290)
95 KOG2376 Signal recognition par 98.7 0.00027 5.9E-09 69.6 35.1 366 165-541 14-487 (652)
96 KOG0624 dsRNA-activated protei 98.7 9.1E-05 2E-09 68.0 29.8 364 130-544 43-424 (504)
97 PF12854 PPR_1: PPR repeat 98.7 2.1E-08 4.6E-13 60.1 4.0 32 367-398 2-33 (34)
98 PF12854 PPR_1: PPR repeat 98.7 4.2E-08 9.1E-13 58.8 4.4 32 332-363 2-33 (34)
99 PLN02789 farnesyltranstransfer 98.7 4.2E-05 9E-10 73.0 26.8 215 165-384 39-267 (320)
100 KOG0985 Vesicle coat protein c 98.6 0.00077 1.7E-08 70.5 36.4 262 234-532 1105-1374(1666)
101 KOG3785 Uncharacterized conser 98.6 0.00036 7.9E-09 64.4 30.8 294 211-514 164-496 (557)
102 KOG1070 rRNA processing protei 98.6 3.8E-05 8.2E-10 82.4 27.5 233 301-537 1457-1696(1710)
103 KOG1128 Uncharacterized conser 98.6 6E-05 1.3E-09 75.9 27.4 238 196-453 396-634 (777)
104 KOG1914 mRNA cleavage and poly 98.6 0.0008 1.7E-08 65.7 36.3 151 388-540 347-500 (656)
105 KOG1070 rRNA processing protei 98.6 4.2E-05 9.1E-10 82.1 27.2 187 236-425 1500-1689(1710)
106 KOG1125 TPR repeat-containing 98.6 1.1E-05 2.4E-10 79.0 21.1 221 312-539 295-525 (579)
107 KOG1125 TPR repeat-containing 98.6 8.4E-06 1.8E-10 79.8 20.2 251 243-499 295-564 (579)
108 KOG1128 Uncharacterized conser 98.5 2.2E-05 4.7E-10 79.0 22.3 238 230-488 395-634 (777)
109 KOG3616 Selective LIM binding 98.5 5.4E-05 1.2E-09 76.0 24.5 318 165-536 591-932 (1636)
110 KOG3616 Selective LIM binding 98.5 0.00027 5.8E-09 71.2 28.5 52 452-506 973-1024(1636)
111 TIGR03302 OM_YfiO outer membra 98.5 2.5E-05 5.5E-10 72.1 20.7 184 197-400 32-231 (235)
112 PRK10370 formate-dependent nit 98.5 3.4E-05 7.5E-10 68.4 20.3 156 205-375 23-181 (198)
113 KOG3617 WD40 and TPR repeat-co 98.5 0.00013 2.9E-09 74.2 26.1 240 162-434 725-994 (1416)
114 PRK14720 transcript cleavage f 98.5 9.1E-05 2E-09 78.8 26.2 236 197-488 30-268 (906)
115 COG5010 TadD Flp pilus assembl 98.4 6.7E-05 1.4E-09 66.6 20.4 160 202-364 70-229 (257)
116 TIGR03302 OM_YfiO outer membra 98.4 3.7E-05 8E-10 71.0 20.2 189 159-366 29-232 (235)
117 COG5010 TadD Flp pilus assembl 98.4 7.8E-05 1.7E-09 66.2 20.6 164 232-399 66-229 (257)
118 KOG0548 Molecular co-chaperone 98.4 0.00024 5.2E-09 69.3 25.5 353 171-541 10-421 (539)
119 PRK10370 formate-dependent nit 98.4 6.3E-05 1.4E-09 66.8 20.1 119 385-506 52-173 (198)
120 PRK14720 transcript cleavage f 98.4 0.00025 5.4E-09 75.6 27.5 240 160-453 28-268 (906)
121 KOG3081 Vesicle coat complex C 98.4 0.0009 1.9E-08 59.6 26.3 118 309-436 115-236 (299)
122 KOG3617 WD40 and TPR repeat-co 98.4 0.0011 2.5E-08 67.8 30.2 331 161-535 755-1168(1416)
123 PRK15179 Vi polysaccharide bio 98.4 0.00017 3.7E-09 76.0 25.4 163 229-400 82-244 (694)
124 PRK15359 type III secretion sy 98.4 6.8E-06 1.5E-10 68.9 12.0 90 448-539 30-119 (144)
125 KOG1914 mRNA cleavage and poly 98.4 0.0034 7.3E-08 61.6 31.2 353 195-552 17-476 (656)
126 KOG1127 TPR repeat-containing 98.4 0.00024 5.2E-09 74.1 24.5 161 165-329 494-657 (1238)
127 COG4783 Putative Zn-dependent 98.3 0.00064 1.4E-08 65.8 25.6 138 243-401 316-454 (484)
128 PRK15179 Vi polysaccharide bio 98.3 0.00039 8.4E-09 73.4 26.2 198 178-385 67-268 (694)
129 KOG3081 Vesicle coat complex C 98.2 0.00094 2E-08 59.5 22.6 174 322-506 93-271 (299)
130 KOG2053 Mitochondrial inherita 98.2 0.0072 1.6E-07 62.9 31.7 223 209-437 20-256 (932)
131 COG4783 Putative Zn-dependent 98.2 0.00094 2E-08 64.7 24.1 137 312-470 316-453 (484)
132 KOG1127 TPR repeat-containing 98.2 0.0012 2.6E-08 69.2 26.0 373 161-538 524-949 (1238)
133 KOG3060 Uncharacterized conser 98.2 0.0016 3.4E-08 57.7 22.8 163 236-401 55-220 (289)
134 KOG2053 Mitochondrial inherita 98.2 0.014 3E-07 60.9 40.6 195 166-367 44-256 (932)
135 PRK15359 type III secretion sy 98.2 9.8E-05 2.1E-09 61.9 14.8 50 245-294 36-85 (144)
136 KOG3060 Uncharacterized conser 98.1 0.0035 7.6E-08 55.6 23.2 188 177-367 26-221 (289)
137 TIGR00756 PPR pentatricopeptid 98.1 5.4E-06 1.2E-10 50.4 4.4 33 269-301 2-34 (35)
138 TIGR00756 PPR pentatricopeptid 98.1 6.2E-06 1.3E-10 50.1 4.3 33 165-197 2-34 (35)
139 TIGR02552 LcrH_SycD type III s 98.1 0.00027 5.9E-09 58.7 15.3 92 271-364 21-112 (135)
140 PF13812 PPR_3: Pentatricopept 98.0 6.6E-06 1.4E-10 49.6 3.9 33 164-196 2-34 (34)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00013 2.8E-09 71.1 14.6 123 168-295 174-296 (395)
142 KOG2041 WD40 repeat protein [G 98.0 0.018 4E-07 58.2 29.1 122 160-292 689-821 (1189)
143 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.5E-10 48.5 4.4 33 268-300 2-34 (34)
144 TIGR02552 LcrH_SycD type III s 98.0 0.00035 7.6E-09 58.0 14.8 97 199-296 18-114 (135)
145 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00049 1.1E-08 67.2 16.4 120 240-364 176-295 (395)
146 PF09976 TPR_21: Tetratricopep 97.9 0.00086 1.9E-08 56.4 16.1 22 275-296 56-77 (145)
147 PF10037 MRP-S27: Mitochondria 97.9 0.0002 4.4E-09 70.1 13.5 124 262-385 61-186 (429)
148 PF10037 MRP-S27: Mitochondria 97.9 0.00022 4.7E-09 69.9 13.3 120 370-489 64-185 (429)
149 KOG0553 TPR repeat-containing 97.9 6.8E-05 1.5E-09 67.9 8.9 100 452-556 91-191 (304)
150 PF09976 TPR_21: Tetratricopep 97.8 0.0012 2.7E-08 55.4 15.3 126 164-292 13-143 (145)
151 PF08579 RPM2: Mitochondrial r 97.8 0.00043 9.3E-09 53.1 10.1 75 344-418 32-115 (120)
152 PF01535 PPR: PPR repeat; Int 97.8 3.7E-05 7.9E-10 45.1 3.6 29 269-297 2-30 (31)
153 PF08579 RPM2: Mitochondrial r 97.7 0.00061 1.3E-08 52.3 10.7 74 311-384 34-116 (120)
154 PF01535 PPR: PPR repeat; Int 97.7 3.5E-05 7.5E-10 45.2 3.1 30 165-194 2-31 (31)
155 KOG0550 Molecular chaperone (D 97.7 0.0091 2E-07 56.8 19.5 87 417-506 259-350 (486)
156 cd00189 TPR Tetratricopeptide 97.6 0.00096 2.1E-08 50.8 11.3 94 445-540 3-96 (100)
157 PRK10866 outer membrane biogen 97.6 0.041 8.8E-07 50.6 23.3 176 343-539 38-239 (243)
158 cd00189 TPR Tetratricopeptide 97.6 0.0014 3.1E-08 49.8 11.5 54 239-292 40-93 (100)
159 PF06239 ECSIT: Evolutionarily 97.6 0.0017 3.7E-08 56.5 12.5 102 266-386 46-152 (228)
160 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0027 5.9E-08 51.1 13.1 99 166-264 5-107 (119)
161 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0035 7.5E-08 50.5 13.6 21 344-364 83-103 (119)
162 PRK10153 DNA-binding transcrip 97.5 0.0071 1.5E-07 62.0 18.4 63 477-541 420-482 (517)
163 PF05843 Suf: Suppressor of fo 97.5 0.0023 5E-08 60.4 13.4 129 165-295 3-135 (280)
164 PF06239 ECSIT: Evolutionarily 97.5 0.0011 2.4E-08 57.6 10.0 89 212-318 66-154 (228)
165 PF14938 SNAP: Soluble NSF att 97.5 0.012 2.7E-07 55.7 18.3 143 380-538 102-263 (282)
166 PF05843 Suf: Suppressor of fo 97.5 0.0026 5.7E-08 60.0 13.6 131 199-331 2-136 (280)
167 KOG2280 Vacuolar assembly/sort 97.5 0.18 3.8E-06 52.0 27.6 340 174-537 400-795 (829)
168 PF04840 Vps16_C: Vps16, C-ter 97.5 0.11 2.4E-06 49.7 27.6 105 376-500 181-285 (319)
169 PLN03088 SGT1, suppressor of 97.5 0.0029 6.2E-08 62.0 14.1 101 414-518 9-109 (356)
170 COG3898 Uncharacterized membra 97.5 0.11 2.4E-06 49.3 31.1 288 246-547 97-398 (531)
171 PRK15363 pathogenicity island 97.5 0.0045 9.8E-08 51.4 12.9 93 447-541 40-132 (157)
172 PF12895 Apc3: Anaphase-promot 97.4 0.00027 5.8E-09 53.0 5.1 81 455-537 2-83 (84)
173 CHL00033 ycf3 photosystem I as 97.4 0.0028 6.1E-08 54.8 12.2 81 198-278 35-117 (168)
174 PRK02603 photosystem I assembl 97.4 0.01 2.2E-07 51.6 15.7 86 200-285 37-124 (172)
175 PLN03088 SGT1, suppressor of 97.4 0.0056 1.2E-07 60.0 15.0 92 273-366 8-99 (356)
176 PRK02603 photosystem I assembl 97.3 0.011 2.4E-07 51.3 14.9 90 266-356 34-125 (172)
177 PRK10866 outer membrane biogen 97.3 0.054 1.2E-06 49.8 19.7 53 244-296 43-98 (243)
178 PF12895 Apc3: Anaphase-promot 97.3 0.00056 1.2E-08 51.3 5.4 14 276-289 67-80 (84)
179 COG4700 Uncharacterized protei 97.2 0.076 1.6E-06 45.0 17.6 128 369-498 86-214 (251)
180 PRK15363 pathogenicity island 97.2 0.013 2.9E-07 48.7 13.1 91 308-400 41-131 (157)
181 KOG1538 Uncharacterized conser 97.2 0.094 2E-06 52.9 20.5 104 196-327 554-657 (1081)
182 CHL00033 ycf3 photosystem I as 97.2 0.011 2.3E-07 51.2 13.0 62 304-365 37-100 (168)
183 COG4700 Uncharacterized protei 97.2 0.13 2.7E-06 43.7 18.4 131 333-467 85-218 (251)
184 PF14938 SNAP: Soluble NSF att 97.1 0.051 1.1E-06 51.5 18.2 113 274-401 101-225 (282)
185 PF12688 TPR_5: Tetratrico pep 97.1 0.02 4.4E-07 45.7 12.9 89 206-294 9-102 (120)
186 PRK10153 DNA-binding transcrip 97.1 0.042 9.1E-07 56.4 18.2 64 336-401 419-482 (517)
187 KOG0553 TPR repeat-containing 97.1 0.0079 1.7E-07 54.9 11.1 100 312-415 91-190 (304)
188 PF13525 YfiO: Outer membrane 97.0 0.14 3E-06 45.8 18.9 170 343-533 11-199 (203)
189 PF14559 TPR_19: Tetratricopep 97.0 0.0023 5E-08 45.6 5.7 50 246-295 4-53 (68)
190 PF13414 TPR_11: TPR repeat; P 97.0 0.0043 9.3E-08 44.3 7.2 64 476-540 2-66 (69)
191 PF14559 TPR_19: Tetratricopep 96.9 0.0042 9.2E-08 44.2 7.0 52 314-366 3-54 (68)
192 KOG1130 Predicted G-alpha GTPa 96.9 0.011 2.4E-07 56.0 11.1 131 410-540 198-343 (639)
193 PF12688 TPR_5: Tetratrico pep 96.9 0.062 1.3E-06 43.0 13.9 90 275-364 9-102 (120)
194 PRK10803 tol-pal system protei 96.9 0.025 5.4E-07 52.5 13.4 95 444-542 145-247 (263)
195 PF13432 TPR_16: Tetratricopep 96.9 0.0055 1.2E-07 43.2 7.1 55 241-295 5-59 (65)
196 KOG2796 Uncharacterized conser 96.9 0.033 7.2E-07 49.8 13.0 129 167-295 181-314 (366)
197 KOG1130 Predicted G-alpha GTPa 96.8 0.017 3.6E-07 54.9 11.4 262 172-435 26-343 (639)
198 COG4235 Cytochrome c biogenesi 96.8 0.073 1.6E-06 49.0 15.3 103 439-543 153-258 (287)
199 PF13432 TPR_16: Tetratricopep 96.8 0.0059 1.3E-07 43.0 6.5 54 484-539 4-58 (65)
200 PF12921 ATP13: Mitochondrial 96.7 0.027 5.9E-07 45.5 10.5 102 406-527 1-103 (126)
201 COG4235 Cytochrome c biogenesi 96.7 0.11 2.4E-06 47.9 15.2 116 261-380 150-268 (287)
202 PF13525 YfiO: Outer membrane 96.6 0.24 5.3E-06 44.2 17.2 58 169-226 11-70 (203)
203 PF04840 Vps16_C: Vps16, C-ter 96.6 0.77 1.7E-05 44.0 26.9 109 409-537 179-287 (319)
204 PF13414 TPR_11: TPR repeat; P 96.6 0.0095 2.1E-07 42.5 6.4 59 269-328 5-64 (69)
205 KOG0550 Molecular chaperone (D 96.5 0.85 1.8E-05 44.0 23.3 53 172-225 58-110 (486)
206 COG3898 Uncharacterized membra 96.5 0.87 1.9E-05 43.6 32.4 307 142-471 68-392 (531)
207 KOG2796 Uncharacterized conser 96.4 0.69 1.5E-05 41.7 22.9 131 270-401 180-315 (366)
208 PF13371 TPR_9: Tetratricopept 96.4 0.017 3.6E-07 41.7 7.1 55 451-506 4-58 (73)
209 PF13281 DUF4071: Domain of un 96.4 1.1 2.3E-05 43.6 20.5 32 475-506 303-334 (374)
210 PF03704 BTAD: Bacterial trans 96.3 0.02 4.4E-07 48.1 8.2 57 238-294 67-123 (146)
211 PF13424 TPR_12: Tetratricopep 96.3 0.022 4.7E-07 41.8 7.1 63 478-540 6-74 (78)
212 PF07079 DUF1347: Protein of u 96.3 1.3 2.8E-05 43.4 37.1 217 317-539 274-522 (549)
213 PF03704 BTAD: Bacterial trans 96.2 0.046 9.9E-07 45.9 9.9 71 444-515 64-139 (146)
214 KOG1538 Uncharacterized conser 96.2 0.42 9.1E-06 48.5 17.0 213 166-401 601-846 (1081)
215 PF13371 TPR_9: Tetratricopept 96.2 0.036 7.7E-07 40.0 7.7 62 485-547 3-64 (73)
216 PRK10803 tol-pal system protei 96.1 0.12 2.6E-06 48.0 12.8 15 349-363 229-243 (263)
217 KOG2280 Vacuolar assembly/sort 96.0 1.2 2.6E-05 46.3 19.4 318 144-501 454-794 (829)
218 PF12921 ATP13: Mitochondrial 95.9 0.12 2.7E-06 41.7 10.3 25 373-397 3-27 (126)
219 PF09205 DUF1955: Domain of un 95.9 0.41 8.9E-06 38.2 12.6 68 476-544 85-152 (161)
220 PRK15331 chaperone protein Sic 95.9 0.4 8.6E-06 40.3 13.2 88 311-400 46-133 (165)
221 KOG3941 Intermediate in Toll s 95.8 0.091 2E-06 47.6 9.6 98 266-363 66-185 (406)
222 PRK15331 chaperone protein Sic 95.8 0.33 7.1E-06 40.8 12.3 86 418-505 48-133 (165)
223 PF09205 DUF1955: Domain of un 95.8 0.8 1.7E-05 36.7 15.5 139 175-334 14-152 (161)
224 PF13281 DUF4071: Domain of un 95.7 2.2 4.9E-05 41.4 21.5 76 237-312 145-227 (374)
225 PF10300 DUF3808: Protein of u 95.6 0.73 1.6E-05 47.0 17.0 160 237-399 192-374 (468)
226 COG5107 RNA14 Pre-mRNA 3'-end 95.6 2.5 5.5E-05 41.3 27.9 144 184-331 30-190 (660)
227 PF13424 TPR_12: Tetratricopep 95.5 0.055 1.2E-06 39.6 6.5 26 269-294 7-32 (78)
228 PF08631 SPO22: Meiosis protei 95.5 2.3 4.9E-05 40.2 26.1 123 174-296 4-150 (278)
229 KOG0543 FKBP-type peptidyl-pro 95.3 0.52 1.1E-05 45.4 13.5 139 378-540 214-354 (397)
230 smart00299 CLH Clathrin heavy 95.3 1.4 3E-05 36.5 15.1 41 343-384 13-53 (140)
231 KOG3941 Intermediate in Toll s 95.3 0.17 3.6E-06 46.0 9.4 102 158-259 62-185 (406)
232 PF04053 Coatomer_WDAD: Coatom 95.1 0.86 1.9E-05 45.9 15.1 57 336-401 346-402 (443)
233 PLN03098 LPA1 LOW PSII ACCUMUL 95.1 0.79 1.7E-05 45.2 14.2 65 232-296 74-141 (453)
234 smart00299 CLH Clathrin heavy 95.0 1.5 3.3E-05 36.3 14.5 41 204-245 13-53 (140)
235 COG0457 NrfG FOG: TPR repeat [ 95.0 2.6 5.5E-05 37.8 30.6 223 281-506 37-265 (291)
236 PF08631 SPO22: Meiosis protei 95.0 3.3 7.2E-05 39.0 26.4 62 339-401 86-150 (278)
237 KOG2610 Uncharacterized conser 94.9 0.87 1.9E-05 42.6 13.2 155 174-329 114-274 (491)
238 COG4105 ComL DNA uptake lipopr 94.9 2.9 6.2E-05 38.0 23.0 177 347-541 44-233 (254)
239 PLN03098 LPA1 LOW PSII ACCUMUL 94.9 0.34 7.5E-06 47.7 11.3 66 195-262 72-141 (453)
240 KOG2610 Uncharacterized conser 94.9 0.83 1.8E-05 42.7 13.0 153 349-504 115-274 (491)
241 PF04053 Coatomer_WDAD: Coatom 94.8 0.69 1.5E-05 46.5 13.5 134 198-363 295-428 (443)
242 COG1729 Uncharacterized protei 94.8 0.87 1.9E-05 41.6 12.8 88 419-506 153-244 (262)
243 PF13170 DUF4003: Protein of u 94.7 3.9 8.5E-05 38.8 20.7 129 283-413 78-223 (297)
244 KOG2041 WD40 repeat protein [G 94.7 6.2 0.00014 40.9 23.9 189 176-400 747-951 (1189)
245 COG3118 Thioredoxin domain-con 94.5 3.9 8.5E-05 37.9 17.0 56 206-262 142-197 (304)
246 KOG2114 Vacuolar assembly/sort 94.5 7.5 0.00016 41.3 19.9 110 172-291 377-487 (933)
247 KOG0543 FKBP-type peptidyl-pro 94.4 0.7 1.5E-05 44.5 11.8 62 269-331 259-320 (397)
248 PF13512 TPR_18: Tetratricopep 94.4 1.6 3.4E-05 35.9 12.2 78 169-246 16-95 (142)
249 KOG2114 Vacuolar assembly/sort 94.4 1.8 3.9E-05 45.6 15.3 49 313-362 408-456 (933)
250 KOG1941 Acetylcholine receptor 94.2 3 6.6E-05 39.6 15.2 227 278-504 17-273 (518)
251 PF04184 ST7: ST7 protein; In 94.2 1.6 3.5E-05 43.4 13.9 84 442-526 259-345 (539)
252 COG4105 ComL DNA uptake lipopr 94.1 4.4 9.6E-05 36.8 20.6 81 163-244 35-117 (254)
253 KOG4555 TPR repeat-containing 93.9 1.2 2.7E-05 35.5 10.3 90 242-332 52-145 (175)
254 COG0457 NrfG FOG: TPR repeat [ 93.9 4.5 9.8E-05 36.1 30.1 166 233-400 59-230 (291)
255 PF13428 TPR_14: Tetratricopep 93.9 0.096 2.1E-06 33.3 3.6 28 479-506 3-30 (44)
256 PF02259 FAT: FAT domain; Int 93.8 7.2 0.00016 38.1 21.3 55 273-331 4-58 (352)
257 COG1729 Uncharacterized protei 93.7 1.7 3.7E-05 39.8 12.3 99 443-543 143-246 (262)
258 PRK11906 transcriptional regul 93.3 7.8 0.00017 38.6 17.0 108 424-536 321-431 (458)
259 KOG4555 TPR repeat-containing 93.1 2.4 5.1E-05 34.0 10.6 90 417-507 53-145 (175)
260 COG3629 DnrI DNA-binding trans 93.0 1.1 2.4E-05 41.6 10.4 78 234-311 154-236 (280)
261 KOG1550 Extracellular protein 93.0 14 0.0003 38.9 24.3 15 458-472 525-539 (552)
262 COG3629 DnrI DNA-binding trans 92.8 1.4 3.1E-05 40.8 10.8 78 338-416 154-236 (280)
263 PF13929 mRNA_stabil: mRNA sta 92.7 3.8 8.3E-05 38.0 13.2 64 194-257 198-262 (292)
264 PF07035 Mic1: Colon cancer-as 92.6 5.8 0.00013 33.8 15.5 51 357-411 14-64 (167)
265 COG5107 RNA14 Pre-mRNA 3'-end 92.6 11 0.00024 37.1 33.0 79 160-241 39-117 (660)
266 PF07035 Mic1: Colon cancer-as 92.6 5.9 0.00013 33.7 14.9 132 393-540 15-148 (167)
267 KOG1550 Extracellular protein 92.5 16 0.00034 38.4 25.5 47 458-507 455-505 (552)
268 PF13170 DUF4003: Protein of u 92.4 10 0.00022 36.0 20.0 131 353-485 78-225 (297)
269 KOG1941 Acetylcholine receptor 92.4 3.3 7.1E-05 39.4 12.4 166 269-434 85-273 (518)
270 KOG1585 Protein required for f 92.4 8 0.00017 34.8 17.6 208 162-395 30-250 (308)
271 PF09613 HrpB1_HrpK: Bacterial 92.3 6 0.00013 33.3 13.0 52 245-296 22-73 (160)
272 PF13428 TPR_14: Tetratricopep 92.3 0.36 7.8E-06 30.6 4.5 19 206-224 9-27 (44)
273 COG3118 Thioredoxin domain-con 92.2 10 0.00022 35.4 18.5 53 312-365 144-196 (304)
274 PF13176 TPR_7: Tetratricopept 92.1 0.26 5.6E-06 29.7 3.5 24 515-538 2-25 (36)
275 PF04184 ST7: ST7 protein; In 92.0 15 0.00031 37.0 18.4 159 309-484 175-338 (539)
276 PF04097 Nic96: Nup93/Nic96; 91.2 11 0.00025 40.0 16.8 61 168-229 116-183 (613)
277 KOG1920 IkappaB kinase complex 91.1 30 0.00065 38.7 23.3 79 344-433 972-1052(1265)
278 PF10602 RPN7: 26S proteasome 90.9 5.1 0.00011 34.7 11.6 60 269-328 38-99 (177)
279 PF10602 RPN7: 26S proteasome 90.7 5.2 0.00011 34.7 11.5 63 164-226 37-101 (177)
280 PRK11906 transcriptional regul 90.7 19 0.00042 35.9 18.4 132 268-401 252-401 (458)
281 PF13929 mRNA_stabil: mRNA sta 90.6 15 0.00032 34.3 17.6 147 141-291 110-262 (292)
282 PF10300 DUF3808: Protein of u 90.3 23 0.00051 36.2 24.5 162 202-364 192-374 (468)
283 PF13176 TPR_7: Tetratricopept 90.2 0.72 1.6E-05 27.7 4.1 26 479-504 1-26 (36)
284 PF13512 TPR_18: Tetratricopep 89.9 10 0.00022 31.3 11.8 55 243-297 20-77 (142)
285 COG1747 Uncharacterized N-term 89.5 25 0.00055 35.4 19.9 179 161-347 64-249 (711)
286 PF11207 DUF2989: Protein of u 89.3 7.4 0.00016 34.1 11.0 73 180-253 123-198 (203)
287 PF09613 HrpB1_HrpK: Bacterial 89.3 12 0.00026 31.5 14.1 19 347-365 54-72 (160)
288 KOG1258 mRNA processing protei 88.8 31 0.00067 35.5 25.6 345 161-532 43-420 (577)
289 cd00923 Cyt_c_Oxidase_Va Cytoc 88.5 3 6.6E-05 31.4 6.9 46 180-225 24-69 (103)
290 PF02284 COX5A: Cytochrome c o 88.3 2.9 6.2E-05 31.9 6.8 43 183-225 30-72 (108)
291 KOG4570 Uncharacterized conser 88.2 9.5 0.0002 35.7 11.3 100 264-365 61-163 (418)
292 COG4649 Uncharacterized protei 88.0 16 0.00034 31.2 14.5 139 161-300 57-200 (221)
293 PF07079 DUF1347: Protein of u 87.8 31 0.00067 34.3 34.6 364 143-517 96-530 (549)
294 KOG1258 mRNA processing protei 87.5 37 0.00081 34.9 34.5 350 166-527 82-490 (577)
295 KOG0890 Protein kinase of the 87.4 78 0.0017 38.5 26.4 311 171-506 1391-1731(2382)
296 KOG4570 Uncharacterized conser 87.2 3.1 6.7E-05 38.7 7.7 103 157-261 58-163 (418)
297 PF02259 FAT: FAT domain; Int 87.0 31 0.00068 33.6 25.1 65 336-400 145-212 (352)
298 COG4649 Uncharacterized protei 87.0 18 0.00039 30.8 15.6 19 384-402 70-88 (221)
299 PF13431 TPR_17: Tetratricopep 87.0 0.65 1.4E-05 27.5 2.3 25 263-287 9-33 (34)
300 PF13431 TPR_17: Tetratricopep 86.6 1.2 2.7E-05 26.3 3.4 21 512-532 13-33 (34)
301 PHA02875 ankyrin repeat protei 86.4 20 0.00043 36.1 14.3 209 174-407 10-230 (413)
302 KOG2066 Vacuolar assembly/sort 86.2 51 0.0011 35.2 25.1 24 341-364 509-532 (846)
303 KOG1920 IkappaB kinase complex 85.9 66 0.0014 36.2 27.1 53 449-504 972-1026(1265)
304 PF14669 Asp_Glu_race_2: Putat 85.1 24 0.00053 30.5 13.9 181 158-361 3-205 (233)
305 PF02284 COX5A: Cytochrome c o 84.8 12 0.00027 28.6 8.5 47 460-506 28-74 (108)
306 PRK09687 putative lyase; Provi 84.6 36 0.00078 32.1 29.6 74 441-523 205-278 (280)
307 KOG0276 Vesicle coat complex C 84.4 22 0.00047 36.6 12.5 131 305-468 617-747 (794)
308 PF00515 TPR_1: Tetratricopept 84.3 2.7 5.9E-05 24.5 4.2 25 480-504 4-28 (34)
309 COG3947 Response regulator con 83.7 38 0.00082 31.6 16.3 58 305-363 282-339 (361)
310 PF07719 TPR_2: Tetratricopept 83.7 3 6.4E-05 24.2 4.2 25 515-539 4-28 (34)
311 COG2909 MalT ATP-dependent tra 83.6 72 0.0016 34.7 29.4 205 348-552 426-658 (894)
312 PF00515 TPR_1: Tetratricopept 83.5 4.4 9.4E-05 23.6 4.9 29 513-541 2-30 (34)
313 PF00637 Clathrin: Region in C 83.4 0.42 9.1E-06 39.8 0.5 83 413-502 13-95 (143)
314 PF07719 TPR_2: Tetratricopept 83.3 4.4 9.6E-05 23.4 4.9 29 478-506 2-30 (34)
315 PF11207 DUF2989: Protein of u 83.1 13 0.00029 32.5 9.4 73 459-532 123-198 (203)
316 PF13374 TPR_10: Tetratricopep 83.1 3.4 7.4E-05 25.3 4.6 28 513-540 3-30 (42)
317 PF13374 TPR_10: Tetratricopep 83.0 3.3 7.1E-05 25.4 4.5 28 478-505 3-30 (42)
318 cd00923 Cyt_c_Oxidase_Va Cytoc 82.8 12 0.00026 28.3 7.7 45 285-329 25-69 (103)
319 PRK15180 Vi polysaccharide bio 82.6 33 0.00072 34.2 12.7 121 244-366 300-420 (831)
320 KOG1585 Protein required for f 82.6 38 0.00082 30.8 19.0 205 304-535 33-250 (308)
321 TIGR02561 HrpB1_HrpK type III 82.4 27 0.00059 29.0 11.9 51 246-296 23-73 (153)
322 KOG4234 TPR repeat-containing 82.3 18 0.00039 31.6 9.6 94 416-512 104-201 (271)
323 COG2976 Uncharacterized protei 81.9 34 0.00074 29.8 14.2 94 449-547 96-194 (207)
324 COG4455 ImpE Protein of avirul 81.7 11 0.00023 33.4 8.2 46 243-288 11-56 (273)
325 PF04097 Nic96: Nup93/Nic96; 81.7 78 0.0017 33.8 16.9 45 201-246 114-158 (613)
326 COG4455 ImpE Protein of avirul 79.8 13 0.00028 33.0 8.1 77 409-486 3-81 (273)
327 PF13762 MNE1: Mitochondrial s 78.8 36 0.00079 28.2 10.7 81 166-246 42-128 (145)
328 KOG0276 Vesicle coat complex C 78.5 37 0.0008 35.0 11.8 99 244-362 648-746 (794)
329 PF00637 Clathrin: Region in C 78.3 1.2 2.5E-05 37.1 1.4 129 377-527 12-140 (143)
330 PHA02875 ankyrin repeat protei 78.1 66 0.0014 32.3 14.4 14 244-257 10-23 (413)
331 PRK09687 putative lyase; Provi 78.0 63 0.0014 30.5 29.6 121 336-470 141-262 (280)
332 COG5159 RPN6 26S proteasome re 77.4 49 0.0011 30.7 11.2 136 273-408 9-165 (421)
333 PF07721 TPR_4: Tetratricopept 77.0 3.7 8E-05 22.4 2.8 22 515-536 4-25 (26)
334 KOG0890 Protein kinase of the 76.5 2E+02 0.0043 35.5 26.0 317 203-543 1388-1733(2382)
335 PF13181 TPR_8: Tetratricopept 76.0 8.2 0.00018 22.3 4.4 25 480-504 4-28 (34)
336 PF13181 TPR_8: Tetratricopept 75.9 8.7 0.00019 22.1 4.5 29 513-541 2-30 (34)
337 KOG1464 COP9 signalosome, subu 75.6 67 0.0014 29.6 15.2 54 478-532 192-251 (440)
338 COG2909 MalT ATP-dependent tra 75.1 1.3E+02 0.0029 32.8 27.9 265 273-537 366-684 (894)
339 PF06552 TOM20_plant: Plant sp 74.4 7.7 0.00017 33.3 5.2 111 424-543 8-138 (186)
340 PRK11619 lytic murein transgly 74.4 1.3E+02 0.0028 32.3 31.1 136 174-318 44-179 (644)
341 PF13174 TPR_6: Tetratricopept 74.1 6.5 0.00014 22.4 3.6 27 515-541 3-29 (33)
342 KOG4507 Uncharacterized conser 73.5 16 0.00034 37.4 7.8 57 343-400 648-704 (886)
343 PF07163 Pex26: Pex26 protein; 73.4 48 0.001 30.7 10.2 87 309-395 90-181 (309)
344 PF13174 TPR_6: Tetratricopept 73.2 5.6 0.00012 22.7 3.1 25 482-506 5-29 (33)
345 COG1747 Uncharacterized N-term 72.6 1.2E+02 0.0025 31.0 25.6 164 336-506 65-234 (711)
346 TIGR03504 FimV_Cterm FimV C-te 72.6 7 0.00015 24.8 3.5 27 517-543 4-30 (44)
347 PF10579 Rapsyn_N: Rapsyn N-te 72.5 13 0.00028 27.0 5.1 46 454-499 18-65 (80)
348 KOG4648 Uncharacterized conser 72.3 12 0.00026 35.4 6.4 93 415-511 105-197 (536)
349 PF10579 Rapsyn_N: Rapsyn N-te 72.3 12 0.00025 27.2 4.9 48 488-535 17-66 (80)
350 KOG2063 Vacuolar assembly/sort 72.2 1.6E+02 0.0035 32.5 16.5 116 269-384 506-638 (877)
351 COG5159 RPN6 26S proteasome re 72.1 85 0.0018 29.2 14.1 52 169-220 9-67 (421)
352 PF07163 Pex26: Pex26 protein; 71.7 52 0.0011 30.5 10.0 89 168-256 88-181 (309)
353 TIGR02561 HrpB1_HrpK type III 71.6 58 0.0013 27.1 12.7 50 315-366 23-73 (153)
354 COG4785 NlpI Lipoprotein NlpI, 71.4 76 0.0016 28.3 16.7 82 249-331 81-162 (297)
355 PRK13342 recombination factor 71.1 1.2E+02 0.0026 30.5 18.7 42 270-311 230-274 (413)
356 PF07575 Nucleopor_Nup85: Nup8 71.1 1.3E+02 0.0027 31.9 14.6 27 162-189 148-174 (566)
357 COG4785 NlpI Lipoprotein NlpI, 70.8 78 0.0017 28.3 17.2 159 336-507 98-267 (297)
358 PF10345 Cohesin_load: Cohesin 69.8 1.6E+02 0.0035 31.5 33.5 89 452-540 371-481 (608)
359 PF11846 DUF3366: Domain of un 69.1 25 0.00053 31.0 7.7 32 509-540 141-172 (193)
360 TIGR03504 FimV_Cterm FimV C-te 68.1 13 0.00028 23.6 4.0 20 380-399 7-26 (44)
361 PRK12798 chemotaxis protein; R 67.7 1.3E+02 0.0029 29.8 21.9 73 478-550 258-333 (421)
362 COG3947 Response regulator con 67.3 1.1E+02 0.0024 28.7 15.7 71 269-340 281-356 (361)
363 KOG1464 COP9 signalosome, subu 66.8 1.1E+02 0.0023 28.3 18.9 207 263-469 22-259 (440)
364 PF10345 Cohesin_load: Cohesin 65.4 2E+02 0.0043 30.8 32.0 185 214-399 37-252 (608)
365 PF09986 DUF2225: Uncharacteri 65.4 1E+02 0.0023 27.6 11.0 34 513-546 166-199 (214)
366 KOG2063 Vacuolar assembly/sort 64.7 2.3E+02 0.005 31.4 16.9 61 165-225 506-571 (877)
367 KOG4077 Cytochrome c oxidase, 64.7 43 0.00093 26.8 7.0 45 182-226 68-112 (149)
368 TIGR02508 type_III_yscG type I 64.7 62 0.0013 24.8 9.1 85 318-410 21-105 (115)
369 PF13762 MNE1: Mitochondrial s 64.4 83 0.0018 26.1 10.6 50 266-315 78-128 (145)
370 KOG4234 TPR repeat-containing 64.2 1E+02 0.0022 27.2 12.6 90 380-471 103-197 (271)
371 KOG4077 Cytochrome c oxidase, 63.9 50 0.0011 26.5 7.2 58 461-519 68-125 (149)
372 TIGR02508 type_III_yscG type I 63.7 65 0.0014 24.7 8.3 60 309-375 46-105 (115)
373 PF10366 Vps39_1: Vacuolar sor 63.4 54 0.0012 25.7 7.6 26 375-400 42-67 (108)
374 PF08311 Mad3_BUB1_I: Mad3/BUB 62.9 55 0.0012 26.5 7.9 43 495-537 81-124 (126)
375 PF14689 SPOB_a: Sensor_kinase 62.4 20 0.00044 24.7 4.5 28 373-400 24-51 (62)
376 PF14689 SPOB_a: Sensor_kinase 62.3 18 0.00038 25.0 4.2 25 480-504 26-50 (62)
377 KOG4648 Uncharacterized conser 62.3 35 0.00075 32.5 7.2 52 206-259 105-157 (536)
378 KOG2659 LisH motif-containing 61.7 1.1E+02 0.0024 27.6 9.9 65 159-225 22-91 (228)
379 PRK10564 maltose regulon perip 61.3 20 0.00044 33.6 5.6 43 160-202 253-296 (303)
380 PF04190 DUF410: Protein of un 59.4 1.5E+02 0.0033 27.5 16.8 26 336-361 89-114 (260)
381 PRK11619 lytic murein transgly 58.8 2.6E+02 0.0057 30.1 36.1 192 339-548 314-512 (644)
382 PF11848 DUF3368: Domain of un 58.7 39 0.00085 21.8 5.1 32 175-206 14-45 (48)
383 PF11848 DUF3368: Domain of un 57.2 46 0.00099 21.5 5.2 33 488-520 13-45 (48)
384 COG2976 Uncharacterized protei 54.7 1.5E+02 0.0033 26.1 16.1 127 163-297 54-189 (207)
385 KOG0687 26S proteasome regulat 54.6 2E+02 0.0044 27.5 14.3 96 338-435 105-209 (393)
386 smart00028 TPR Tetratricopepti 54.5 20 0.00044 19.3 3.2 25 480-504 4-28 (34)
387 KOG2297 Predicted translation 54.2 2E+02 0.0043 27.3 18.8 19 443-461 322-340 (412)
388 PF11846 DUF3366: Domain of un 53.8 41 0.00089 29.5 6.3 32 195-226 141-172 (193)
389 KOG2908 26S proteasome regulat 53.4 1.7E+02 0.0038 28.1 10.1 58 273-330 81-143 (380)
390 KOG2659 LisH motif-containing 53.3 1.4E+02 0.003 26.9 9.1 22 448-469 70-91 (228)
391 KOG0687 26S proteasome regulat 53.0 2.2E+02 0.0047 27.3 15.2 14 386-399 195-208 (393)
392 PF09670 Cas_Cas02710: CRISPR- 53.0 2.4E+02 0.0053 28.0 12.1 57 344-401 138-198 (379)
393 KOG0991 Replication factor C, 51.6 1.9E+02 0.0041 26.3 15.3 83 343-433 136-218 (333)
394 PRK10564 maltose regulon perip 51.0 31 0.00068 32.4 5.0 30 480-509 260-289 (303)
395 KOG3807 Predicted membrane pro 50.8 2.3E+02 0.005 27.1 11.9 110 385-507 229-341 (556)
396 COG0735 Fur Fe2+/Zn2+ uptake r 50.1 1.1E+02 0.0024 25.4 7.9 60 466-526 10-69 (145)
397 PF06855 DUF1250: Protein of u 49.6 21 0.00045 22.9 2.7 42 149-190 1-42 (46)
398 KOG4507 Uncharacterized conser 48.2 1.2E+02 0.0026 31.4 8.8 104 209-313 618-721 (886)
399 smart00386 HAT HAT (Half-A-TPR 47.3 33 0.00071 19.1 3.2 25 249-273 3-27 (33)
400 PF12862 Apc5: Anaphase-promot 47.2 1.2E+02 0.0026 22.8 7.2 20 520-539 49-68 (94)
401 COG0735 Fur Fe2+/Zn2+ uptake r 46.5 95 0.0021 25.8 6.9 64 184-248 7-70 (145)
402 cd08819 CARD_MDA5_2 Caspase ac 46.2 1.2E+02 0.0027 22.6 7.7 35 314-353 48-82 (88)
403 PF14669 Asp_Glu_race_2: Putat 46.1 2.1E+02 0.0045 25.1 14.0 56 447-502 137-206 (233)
404 cd08819 CARD_MDA5_2 Caspase ac 46.1 1.2E+02 0.0027 22.6 7.3 64 183-252 22-85 (88)
405 PF15297 CKAP2_C: Cytoskeleton 46.0 2.5E+02 0.0055 27.2 10.2 64 458-523 119-186 (353)
406 KOG2396 HAT (Half-A-TPR) repea 45.6 3.5E+02 0.0076 27.7 36.7 92 446-540 464-558 (568)
407 PF06552 TOM20_plant: Plant sp 45.5 2E+02 0.0044 24.9 10.8 42 388-437 96-137 (186)
408 PF09477 Type_III_YscG: Bacter 45.2 1.5E+02 0.0032 23.2 9.6 80 212-297 20-99 (116)
409 PF13934 ELYS: Nuclear pore co 45.0 1.8E+02 0.0039 26.4 9.0 128 409-550 78-207 (226)
410 PF09454 Vps23_core: Vps23 cor 44.6 43 0.00093 23.4 3.8 51 474-525 5-55 (65)
411 cd00280 TRFH Telomeric Repeat 44.4 1.7E+02 0.0037 25.4 7.9 22 344-365 118-139 (200)
412 KOG0292 Vesicle coat complex C 44.2 4.8E+02 0.01 28.9 20.1 97 452-548 1001-1120(1202)
413 PF07678 A2M_comp: A-macroglob 43.9 1.7E+02 0.0037 26.9 8.9 14 351-364 206-219 (246)
414 PF11663 Toxin_YhaV: Toxin wit 43.8 29 0.00062 28.2 3.2 23 489-511 107-129 (140)
415 COG0790 FOG: TPR repeat, SEL1 43.7 2.8E+02 0.0061 26.0 22.9 16 352-367 128-143 (292)
416 KOG0686 COP9 signalosome, subu 43.7 3.4E+02 0.0074 26.9 14.8 62 304-365 152-215 (466)
417 PHA03100 ankyrin repeat protei 43.4 3.4E+02 0.0073 27.8 12.1 11 527-537 431-441 (480)
418 PF11663 Toxin_YhaV: Toxin wit 42.8 24 0.00053 28.6 2.6 34 452-487 105-138 (140)
419 PF04090 RNA_pol_I_TF: RNA pol 42.7 2.4E+02 0.0052 24.9 10.6 50 408-458 42-92 (199)
420 PF08424 NRDE-2: NRDE-2, neces 42.4 3.2E+02 0.007 26.3 17.8 118 424-543 48-185 (321)
421 COG5108 RPO41 Mitochondrial DN 42.2 2E+02 0.0043 30.4 9.4 75 377-454 33-115 (1117)
422 KOG2297 Predicted translation 42.0 3.1E+02 0.0068 26.0 18.7 75 342-426 260-340 (412)
423 COG5187 RPN7 26S proteasome re 41.9 3E+02 0.0066 25.9 13.6 25 338-362 116-140 (412)
424 PF02847 MA3: MA3 domain; Int 41.4 1.2E+02 0.0027 23.6 6.7 21 273-293 8-28 (113)
425 PF09670 Cas_Cas02710: CRISPR- 41.2 3.7E+02 0.008 26.7 12.6 55 172-227 140-198 (379)
426 PF09454 Vps23_core: Vps23 cor 41.1 45 0.00098 23.2 3.5 51 160-211 5-55 (65)
427 COG4259 Uncharacterized protei 40.6 1.1E+02 0.0023 23.4 5.4 32 482-515 77-108 (121)
428 cd00280 TRFH Telomeric Repeat 40.3 2.2E+02 0.0048 24.8 8.0 22 484-505 118-139 (200)
429 KOG2471 TPR repeat-containing 39.7 4.3E+02 0.0093 27.0 15.7 105 418-524 251-381 (696)
430 PF11838 ERAP1_C: ERAP1-like C 39.7 3.4E+02 0.0075 25.9 18.2 59 304-365 171-229 (324)
431 PF11838 ERAP1_C: ERAP1-like C 39.6 3.5E+02 0.0075 25.9 18.5 147 388-539 146-302 (324)
432 PF07575 Nucleopor_Nup85: Nup8 39.2 1.6E+02 0.0035 31.1 8.9 22 456-477 509-530 (566)
433 KOG4567 GTPase-activating prot 39.0 3.5E+02 0.0076 25.8 9.7 70 218-291 263-342 (370)
434 KOG4642 Chaperone-dependent E3 38.9 3.1E+02 0.0067 25.1 11.2 19 485-503 86-104 (284)
435 PRK09857 putative transposase; 38.4 2.4E+02 0.0052 26.8 9.1 61 239-299 212-272 (292)
436 smart00777 Mad3_BUB1_I Mad3/BU 38.3 2.1E+02 0.0046 23.1 9.4 43 494-536 80-123 (125)
437 PF12862 Apc5: Anaphase-promot 38.2 1.7E+02 0.0037 22.0 7.0 24 483-506 47-70 (94)
438 KOG2034 Vacuolar sorting prote 38.1 5.9E+02 0.013 28.2 25.9 257 170-459 365-645 (911)
439 PF11768 DUF3312: Protein of u 38.0 4.2E+02 0.0091 27.5 10.9 23 203-225 413-435 (545)
440 PRK09857 putative transposase; 37.8 3.1E+02 0.0067 26.0 9.7 65 481-546 210-274 (292)
441 KOG4642 Chaperone-dependent E3 37.3 3.3E+02 0.0072 25.0 10.1 21 273-293 84-104 (284)
442 PRK08691 DNA polymerase III su 36.6 5.9E+02 0.013 27.7 13.0 87 143-232 180-279 (709)
443 KOG0686 COP9 signalosome, subu 36.2 4.5E+02 0.0097 26.2 15.0 62 234-295 151-215 (466)
444 PF10255 Paf67: RNA polymerase 35.6 2.1E+02 0.0046 28.5 8.4 100 300-399 70-191 (404)
445 PF03745 DUF309: Domain of unk 35.6 1.5E+02 0.0032 20.4 6.0 49 487-535 9-62 (62)
446 COG2178 Predicted RNA-binding 35.5 3.1E+02 0.0067 24.1 9.9 17 523-539 132-148 (204)
447 PRK10941 hypothetical protein; 34.9 3.9E+02 0.0084 25.1 11.0 78 445-523 184-262 (269)
448 PF10366 Vps39_1: Vacuolar sor 34.9 2.2E+02 0.0048 22.2 7.2 27 479-505 41-67 (108)
449 COG0790 FOG: TPR repeat, SEL1 34.8 3.9E+02 0.0084 25.1 23.3 83 282-367 128-221 (292)
450 PF00244 14-3-3: 14-3-3 protei 34.7 3.6E+02 0.0078 24.6 9.4 166 378-543 7-200 (236)
451 PF11817 Foie-gras_1: Foie gra 34.6 2.1E+02 0.0045 26.4 7.9 57 272-328 183-244 (247)
452 COG2256 MGS1 ATPase related to 34.2 4.9E+02 0.011 26.0 15.2 21 316-336 263-283 (436)
453 PF04762 IKI3: IKI3 family; I 33.4 6.8E+02 0.015 28.5 12.8 28 304-331 814-843 (928)
454 PF03745 DUF309: Domain of unk 33.3 1.6E+02 0.0035 20.2 5.6 14 315-328 12-25 (62)
455 COG5187 RPN7 26S proteasome re 33.0 4.3E+02 0.0092 25.0 12.7 38 197-234 114-155 (412)
456 PF09868 DUF2095: Uncharacteri 32.6 1.8E+02 0.004 22.8 5.7 26 168-193 66-91 (128)
457 KOG4567 GTPase-activating prot 32.6 2.4E+02 0.0052 26.8 7.6 58 357-419 263-320 (370)
458 PF08424 NRDE-2: NRDE-2, neces 32.3 4.7E+02 0.01 25.2 18.3 79 215-294 48-129 (321)
459 KOG0403 Neoplastic transformat 32.0 5.5E+02 0.012 25.9 20.0 56 481-539 513-570 (645)
460 PF04762 IKI3: IKI3 family; I 32.0 6.3E+02 0.014 28.8 12.3 30 337-366 812-843 (928)
461 KOG0292 Vesicle coat complex C 31.7 5.7E+02 0.012 28.4 10.9 177 175-400 605-781 (1202)
462 PRK13342 recombination factor 31.6 5.5E+02 0.012 25.8 20.0 20 421-440 244-263 (413)
463 KOG1308 Hsp70-interacting prot 31.5 64 0.0014 30.9 3.9 89 420-511 127-216 (377)
464 PRK11639 zinc uptake transcrip 31.4 2.3E+02 0.005 24.3 7.1 60 189-249 17-76 (169)
465 KOG0376 Serine-threonine phosp 30.9 68 0.0015 32.2 4.1 98 449-552 11-110 (476)
466 PRK11639 zinc uptake transcrip 30.9 3.3E+02 0.0071 23.3 8.0 61 433-494 17-77 (169)
467 cd07153 Fur_like Ferric uptake 30.4 1.3E+02 0.0029 23.5 5.2 44 169-212 6-49 (116)
468 PF12926 MOZART2: Mitotic-spin 30.4 2.3E+02 0.005 21.1 8.2 42 219-260 29-70 (88)
469 COG5108 RPO41 Mitochondrial DN 30.2 7.1E+02 0.015 26.7 11.5 75 203-279 33-115 (1117)
470 PF15297 CKAP2_C: Cytoskeleton 30.1 2.9E+02 0.0062 26.8 7.9 42 166-207 143-184 (353)
471 PF10155 DUF2363: Uncharacteri 29.9 3E+02 0.0065 22.3 11.2 54 172-225 72-125 (126)
472 PRK09462 fur ferric uptake reg 29.9 3.2E+02 0.007 22.6 7.9 60 433-493 8-68 (148)
473 KOG1586 Protein required for f 29.8 4.4E+02 0.0095 24.1 19.4 254 216-484 3-272 (288)
474 PF10475 DUF2450: Protein of u 29.5 4.9E+02 0.011 24.6 13.7 25 439-463 194-218 (291)
475 TIGR02710 CRISPR-associated pr 29.4 5.7E+02 0.012 25.3 11.7 52 172-223 139-196 (380)
476 cd07153 Fur_like Ferric uptake 29.3 1.5E+02 0.0033 23.2 5.4 47 448-494 6-52 (116)
477 KOG1308 Hsp70-interacting prot 29.2 39 0.00084 32.3 2.1 96 453-551 125-221 (377)
478 COG4003 Uncharacterized protei 28.7 2.3E+02 0.0051 20.7 5.4 24 205-228 38-61 (98)
479 COG2178 Predicted RNA-binding 28.7 4.1E+02 0.0088 23.4 10.7 19 207-225 38-56 (204)
480 COG2231 Uncharacterized protei 28.6 2.4E+02 0.0052 25.0 6.5 55 134-188 116-171 (215)
481 PF08311 Mad3_BUB1_I: Mad3/BUB 28.4 3.2E+02 0.0069 22.0 10.2 44 460-503 81-125 (126)
482 KOG1114 Tripeptidyl peptidase 28.4 8.9E+02 0.019 27.2 14.1 81 388-469 1212-1293(1304)
483 KOG2908 26S proteasome regulat 28.3 5.6E+02 0.012 24.8 12.2 62 165-226 77-143 (380)
484 PRK09462 fur ferric uptake reg 27.8 2.5E+02 0.0054 23.3 6.7 61 188-249 7-68 (148)
485 KOG3364 Membrane protein invol 27.8 3.5E+02 0.0076 22.3 8.7 68 299-366 29-100 (149)
486 PRK06645 DNA polymerase III su 27.8 7E+02 0.015 26.0 11.0 85 144-231 190-290 (507)
487 PRK06645 DNA polymerase III su 27.7 7.2E+02 0.016 25.9 11.3 32 270-302 261-292 (507)
488 PF12926 MOZART2: Mitotic-spin 27.7 2.6E+02 0.0057 20.8 8.0 41 428-468 29-69 (88)
489 PRK10941 hypothetical protein; 27.4 5.2E+02 0.011 24.2 10.5 59 237-295 185-243 (269)
490 PF11817 Foie-gras_1: Foie gra 27.2 3.1E+02 0.0068 25.2 7.8 57 482-538 183-244 (247)
491 PRK14958 DNA polymerase III su 27.1 7.3E+02 0.016 25.8 13.3 86 144-232 181-279 (509)
492 PRK13800 putative oxidoreducta 26.8 9.7E+02 0.021 27.2 30.5 245 266-539 634-879 (897)
493 PHA03100 ankyrin repeat protei 26.8 6.2E+02 0.013 25.8 10.9 217 169-407 38-278 (480)
494 PF02847 MA3: MA3 domain; Int 26.7 3E+02 0.0066 21.3 7.2 21 204-224 8-28 (113)
495 KOG3636 Uncharacterized conser 26.5 6.7E+02 0.015 25.2 15.4 88 435-523 176-271 (669)
496 PF09868 DUF2095: Uncharacteri 26.3 2.7E+02 0.006 21.9 5.7 39 483-522 67-105 (128)
497 PF11123 DNA_Packaging_2: DNA 26.2 2.5E+02 0.0054 20.1 5.1 32 248-279 12-43 (82)
498 PF01475 FUR: Ferric uptake re 26.2 1.3E+02 0.0029 23.8 4.6 45 168-212 12-56 (120)
499 PF14853 Fis1_TPR_C: Fis1 C-te 26.1 2E+02 0.0044 19.0 6.1 30 482-513 6-35 (53)
500 PF11768 DUF3312: Protein of u 26.0 7.7E+02 0.017 25.7 11.7 23 342-364 413-435 (545)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.5e-62 Score=523.47 Aligned_cols=445 Identities=16% Similarity=0.216 Sum_probs=401.5
Q ss_pred hHHHHHHhcccCcchHHHHHh------hCCCCCCHH----HHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 008633 101 RLRGVFLQKLKGKGVIEDALW------NVNVDLSLD----VVGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIV 170 (558)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~~l~------~~~~~~~~~----~v~~~l~~~~~~~~~~~~ff~~~~~~~~~~~~~~~~~~li 170 (558)
..+..+..++...+.++++++ ..|+..... .+...+.+.+.. +.|..||+.+. .||..+||.+|
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~-~eAl~lf~~M~-----~pd~~Tyn~LL 444 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAV-KEAFRFAKLIR-----NPTLSTFNMLM 444 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCH-HHHHHHHHHcC-----CCCHHHHHHHH
Confidence 334444455544455555543 334332222 222334433333 55667776543 39999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHh
Q 008633 171 KALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVG 250 (558)
Q Consensus 171 ~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~ 250 (558)
.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 251 AASSLFNSMKG-KVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVA--EGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDT 327 (558)
Q Consensus 251 ~A~~~~~~m~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 327 (558)
+|.++|+.|.. ++.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999974 5889999999999999999999999999999986 68999999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 008633 328 MKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPST 407 (558)
Q Consensus 328 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 407 (558)
|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.|+.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008633 408 GTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGL 487 (558)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 487 (558)
.+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHHhcCC
Q 008633 488 CNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLA----S-------------------NKLESAYNLFRKIKIARQN 544 (558)
Q Consensus 488 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~~~~ 544 (558)
++.|++++|.+++++|.+.|+.||..+|+.|+..|.+ + +..++|..+|++|.+.|+.
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~ 844 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTL 844 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999876432 1 2347899999999999999
Q ss_pred chhhhhh
Q 008633 545 DYARRLW 551 (558)
Q Consensus 545 ~~~~~~~ 551 (558)
|+..++-
T Consensus 845 Pd~~T~~ 851 (1060)
T PLN03218 845 PTMEVLS 851 (1060)
T ss_pred CCHHHHH
Confidence 9977653
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.1e-62 Score=521.62 Aligned_cols=416 Identities=21% Similarity=0.312 Sum_probs=396.8
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008633 129 LDVVGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSF 208 (558)
Q Consensus 129 ~~~v~~~l~~~~~~~~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~ 208 (558)
..++..+++.+.. +.|..+|+++.+...+.++...++.++.+|.+.|.+++|+.+++.|.. ||..+|+.++.+|
T Consensus 374 ~~~y~~l~r~G~l--~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 374 IDAYNRLLRDGRI--KDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVC 447 (1060)
T ss_pred HHHHHHHHHCcCH--HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHH
Confidence 3455555554443 567788888877766788999999999999999999999999999974 8999999999999
Q ss_pred HHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhc-CCCCChhhHHHHHHHHHhcCCHHHHH
Q 008633 209 IRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKG-KVLFNVMTYNIVISGWSKLGQVVEME 287 (558)
Q Consensus 209 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-~~~~~~~~~~~li~~~~~~g~~~~A~ 287 (558)
++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. ++.||..+|+.||.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999975 57899999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 288 RVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKE--KGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 288 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++|.++|++|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999986 68999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 008633 366 YNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAY 445 (558)
Q Consensus 366 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 445 (558)
.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008633 446 KLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLAS 525 (558)
Q Consensus 446 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 525 (558)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCchhhhh
Q 008633 526 NKLESAYNLFRKIKIARQNDYARRL 550 (558)
Q Consensus 526 g~~~~A~~~~~~m~~~~~~~~~~~~ 550 (558)
|++++|.+++++|.+.|+.|+...+
T Consensus 768 G~le~A~~l~~~M~k~Gi~pd~~ty 792 (1060)
T PLN03218 768 DDADVGLDLLSQAKEDGIKPNLVMC 792 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999999999999999999987544
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.4e-60 Score=506.72 Aligned_cols=439 Identities=15% Similarity=0.176 Sum_probs=402.7
Q ss_pred CchhhHHHHHHhcccCcchH------HHHHhhCCCCCCHHHHHHHHHcCCC--chHHHHHHHHHHhcCCCCCCCHHHHHH
Q 008633 97 LPEERLRGVFLQKLKGKGVI------EDALWNVNVDLSLDVVGKVVNRGNL--SGEAMVLFFNWAIKHPNVAKDVKSYNV 168 (558)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~------~~~l~~~~~~~~~~~v~~~l~~~~~--~~~~~~~ff~~~~~~~~~~~~~~~~~~ 168 (558)
.++...+..+++.+...+.+ ...+...|+..+..+.+.++..... ..+.|..+|+. ...||..+||.
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~-----m~~~~~~t~n~ 194 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE-----MPERNLASWGT 194 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhc-----CCCCCeeeHHH
Confidence 46777888888888655543 3445567888777666665553222 22556666653 34689999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 169 IVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLH 248 (558)
Q Consensus 169 li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~ 248 (558)
+|.+|++.|++++|+++|++|.+.|+.||..||..++.+|++.|..+.+.+++..+.+.|+.+|..+||+|+++|++.|+
T Consensus 195 li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~ 274 (697)
T PLN03081 195 IIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD 274 (697)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 249 VGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTM 328 (558)
Q Consensus 249 ~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 328 (558)
+++|.++|+.|... |+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|++++|.++++.|
T Consensus 275 ~~~A~~vf~~m~~~---~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m 351 (697)
T PLN03081 275 IEDARCVFDGMPEK---TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL 351 (697)
T ss_pred HHHHHHHHHhCCCC---ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 99999999999764 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 008633 329 KEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTG 408 (558)
Q Consensus 329 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 408 (558)
.+.|+.||..+|++|+++|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|.+.|+.||..
T Consensus 352 ~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~ 427 (697)
T PLN03081 352 IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV 427 (697)
T ss_pred HHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH
Confidence 999999999999999999999999999999999997 5899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008633 409 TITSFLEPLCSYGPPHAAMMMYKKARK-VGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGL 487 (558)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 487 (558)
||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++++.+|
T Consensus 428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~ 504 (697)
T PLN03081 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTAC 504 (697)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHH
Confidence 999999999999999999999999986 699999999999999999999999999998876 6789999999999999
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchhhhhhc
Q 008633 488 CNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIKIARQNDYARRLWR 552 (558)
Q Consensus 488 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 552 (558)
+..|+++.|..+++++.+. .|+ ..+|..|++.|++.|++++|.+++++|++.|+.+..+..|-
T Consensus 505 ~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i 568 (697)
T PLN03081 505 RIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWI 568 (697)
T ss_pred HHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEE
Confidence 9999999999999999744 564 67999999999999999999999999999999988887773
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.6e-57 Score=496.49 Aligned_cols=433 Identities=19% Similarity=0.281 Sum_probs=369.2
Q ss_pred CchhhHHHHHHhcccCcch------HHHHHhhCCCCCCHHHHHHHHH----cCCCchHHHHHHHHHHhcCCCCCCCHHHH
Q 008633 97 LPEERLRGVFLQKLKGKGV------IEDALWNVNVDLSLDVVGKVVN----RGNLSGEAMVLFFNWAIKHPNVAKDVKSY 166 (558)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~------~~~~l~~~~~~~~~~~v~~~l~----~~~~~~~~~~~ff~~~~~~~~~~~~~~~~ 166 (558)
.|+...|..+++.+.+.+. +...+...|+..+..+.+.++. .+.. +.|..+|+. ...||..+|
T Consensus 184 ~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~--~~A~~lf~~-----m~~~d~~s~ 256 (857)
T PLN03077 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDV--VSARLVFDR-----MPRRDCISW 256 (857)
T ss_pred CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCH--HHHHHHHhc-----CCCCCcchh
Confidence 4555566666666544332 2333344565555444444433 3322 456666654 346899999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008633 167 NVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQR 246 (558)
Q Consensus 167 ~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 246 (558)
|.||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+||+|+.+|++.
T Consensus 257 n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 336 (857)
T PLN03077 257 NAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 247 LHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFD 326 (558)
Q Consensus 247 ~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 326 (558)
|++++|.++|++|.. ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++
T Consensus 337 g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~ 413 (857)
T PLN03077 337 GSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413 (857)
T ss_pred CCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHH
Confidence 999999999999975 59999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 008633 327 TMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPS 406 (558)
Q Consensus 327 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 406 (558)
.|.+.|+.|+..+|+.|+++|++.|++++|.++|++|. .+|..+|+++|.+|++.|+.++|.++|++|.. ++.||
T Consensus 414 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd 488 (857)
T PLN03077 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPN 488 (857)
T ss_pred HHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCC
Confidence 99999999999999999999999999999999999998 57889999999999999999999999999986 58999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC------------------------------CCCHHHHHHHHHHHHcCC
Q 008633 407 TGTITSFLEPLCSYGPPHAAMMMYKKARKVGC------------------------------KLSLTAYKLLLRRLSGFG 456 (558)
Q Consensus 407 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------------------------------~~~~~~~~~li~~~~~~g 456 (558)
..||+.++.+|++.|..+.+.+++..+.+.|+ .+|..+|+.+|.+|++.|
T Consensus 489 ~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G 568 (857)
T PLN03077 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHG 568 (857)
T ss_pred HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcC
Confidence 99999999888888888888877777776665 456667777777777888
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008633 457 KCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESL-RKGFCPSRLVYSKLSNKLLASNKLESAYNLF 535 (558)
Q Consensus 457 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 535 (558)
+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.++++|.+.|++++|.+++
T Consensus 569 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~ 648 (857)
T PLN03077 569 KGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFI 648 (857)
T ss_pred CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Confidence 888888888888888888888888888888888888888888888887 5678888888888888888888888888888
Q ss_pred HHHHHhcCCchh
Q 008633 536 RKIKIARQNDYA 547 (558)
Q Consensus 536 ~~m~~~~~~~~~ 547 (558)
++|. +.|+.
T Consensus 649 ~~m~---~~pd~ 657 (857)
T PLN03077 649 NKMP---ITPDP 657 (857)
T ss_pred HHCC---CCCCH
Confidence 8774 45553
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.4e-57 Score=493.94 Aligned_cols=440 Identities=19% Similarity=0.272 Sum_probs=384.2
Q ss_pred CchhhHHHHHHhcccCcchHHHH------HhhCCCCCCH----HHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCHHHH
Q 008633 97 LPEERLRGVFLQKLKGKGVIEDA------LWNVNVDLSL----DVVGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSY 166 (558)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~~------l~~~~~~~~~----~~v~~~l~~~~~~~~~~~~ff~~~~~~~~~~~~~~~~ 166 (558)
.++...+..+++.+.....+..+ +...+...+. .++..+.+.+.. +.|..+|+. ..+||+.+|
T Consensus 83 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~--~~A~~~f~~-----m~~~d~~~~ 155 (857)
T PLN03077 83 PVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGEL--VHAWYVFGK-----MPERDLFSW 155 (857)
T ss_pred CCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCCh--HHHHHHHhc-----CCCCCeeEH
Confidence 45666677777776554433332 2334444443 334333344433 455666653 346899999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008633 167 NVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQR 246 (558)
Q Consensus 167 ~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 246 (558)
|.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..++++.+.+++..|.+.|+.||..++|.||.+|++.
T Consensus 156 n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~ 235 (857)
T PLN03077 156 NVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC 235 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 247 LHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFD 326 (558)
Q Consensus 247 ~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 326 (558)
|++++|.++|++|.. +|..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++.
T Consensus 236 g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~ 312 (857)
T PLN03077 236 GDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHG 312 (857)
T ss_pred CCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Confidence 999999999999976 49999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 008633 327 TMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPS 406 (558)
Q Consensus 327 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 406 (558)
.|.+.|+.||..+|++|+.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|+++|++|.+.|+.||
T Consensus 313 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd 388 (857)
T PLN03077 313 YVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388 (857)
T ss_pred HHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999997 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC--------------
Q 008633 407 TGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESG-------------- 472 (558)
Q Consensus 407 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------- 472 (558)
..||+.++.+|++.|+++.|.++++.+.+.|+.++..+|+.|+++|++.|++++|.++|++|.+.+
T Consensus 389 ~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~ 468 (857)
T PLN03077 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLN 468 (857)
T ss_pred ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999888888887775321
Q ss_pred ----------------C---------------------------------------------------------------
Q 008633 473 ----------------Y--------------------------------------------------------------- 473 (558)
Q Consensus 473 ----------------~--------------------------------------------------------------- 473 (558)
+
T Consensus 469 g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~ 548 (857)
T PLN03077 469 NRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN 548 (857)
T ss_pred CCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHH
Confidence 2
Q ss_pred --CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhcCCchhhhh
Q 008633 474 --PSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIK-IARQNDYARRL 550 (558)
Q Consensus 474 --~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~ 550 (558)
.||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|. +.++.|+...|
T Consensus 549 ~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y 628 (857)
T PLN03077 549 SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628 (857)
T ss_pred hcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH
Confidence 345566777888888888888888888888888888888888888888888888888888888887 67777776544
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.7e-56 Score=474.65 Aligned_cols=404 Identities=14% Similarity=0.169 Sum_probs=348.7
Q ss_pred CCCCHHHHHHHHHcCC--CchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 008633 125 VDLSLDVVGKVVNRGN--LSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLS 202 (558)
Q Consensus 125 ~~~~~~~v~~~l~~~~--~~~~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~ 202 (558)
+.++......++.... ...+.+..++..+. ..|+.||..+||.++..|++.|++++|.++|++|.+ ||..+|+
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~-~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n 193 (697)
T PLN03081 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVE-SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWG 193 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHH
Confidence 4455555444444211 12345566665544 457888999999999999999999999999998853 7888999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhc-CCCCChhhHHHHHHHHHhcC
Q 008633 203 IVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKG-KVLFNVMTYNIVISGWSKLG 281 (558)
Q Consensus 203 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-~~~~~~~~~~~li~~~~~~g 281 (558)
.+|.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++++.|..+.+.+++..+.. +..+|..+||+||.+|++.|
T Consensus 194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 99999999999999999999999888889999999999999999999988888887754 57789999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 282 QVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYK 361 (558)
Q Consensus 282 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 361 (558)
++++|.++|++|. .+|..+|++++.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|++++|.+++.
T Consensus 274 ~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 274 DIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred CHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 9999999999885 468899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 008633 362 GMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLS 441 (558)
Q Consensus 362 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 441 (558)
.|.+.|+.||..+|++||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||
T Consensus 350 ~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999885 47888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008633 442 LTAYKLLLRRLSGFGKCGMLLDLWHEMQE-SGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSN 520 (558)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 520 (558)
..||+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|+.|+.
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~ 502 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLT 502 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHH
Confidence 99999999999999999999999999975 689999999999999999999999999998765 57899999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCch
Q 008633 521 KLLASNKLESAYNLFRKIKIARQNDY 546 (558)
Q Consensus 521 ~~~~~g~~~~A~~~~~~m~~~~~~~~ 546 (558)
+|...|+++.|.++++++. ++.|+
T Consensus 503 a~~~~g~~~~a~~~~~~l~--~~~p~ 526 (697)
T PLN03081 503 ACRIHKNLELGRLAAEKLY--GMGPE 526 (697)
T ss_pred HHHHcCCcHHHHHHHHHHh--CCCCC
Confidence 9999999999999999887 44444
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=8e-24 Score=235.78 Aligned_cols=367 Identities=13% Similarity=0.089 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008633 163 VKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWC 242 (558)
Q Consensus 163 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 242 (558)
...+..+...+...|++++|...++++...+ +.+..++..+...+.+.|+.++|..+++++.+.+ +.+...+..++..
T Consensus 499 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 576 (899)
T TIGR02917 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQY 576 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHH
Confidence 3444445555555555555555555554432 2244445555555555555555555555544432 2233444444555
Q ss_pred HHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 243 LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAI 322 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 322 (558)
|.+.|++++|..+++.+....+.+..+|..++.++.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.
T Consensus 577 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 577 YLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555555544444444455555555555555555555555544432 123334444444444555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH-------------------------
Q 008633 323 EVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTR------------------------- 377 (558)
Q Consensus 323 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~------------------------- 377 (558)
.+++++.+.... +..++..++..+...|++++|.++++.+.+.+ +.+...+..
T Consensus 656 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 656 TSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 555544443221 33444444444444444444444444444432 233344444
Q ss_pred --------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008633 378 --------LISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLL 449 (558)
Q Consensus 378 --------li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 449 (558)
++.++.+.|++++|.+.++++.+.. +.+...+..+...|...|+.++|..+|+++.+.. +.+..+++.+.
T Consensus 734 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~ 811 (899)
T TIGR02917 734 PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLA 811 (899)
T ss_pred CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4444444555555555544444432 2233444444444444555555555555554433 23444445555
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008633 450 RRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLE 529 (558)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 529 (558)
..+...|+ .+|+..++++.+.. +-+..++..+...+...|++++|..+++++++.+. .+..++..++.++.+.|+++
T Consensus 812 ~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~ 888 (899)
T TIGR02917 812 WLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKA 888 (899)
T ss_pred HHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHH
Confidence 55555555 44555555444432 22333444455555555555555555555555432 24555555555555555555
Q ss_pred HHHHHHHHHH
Q 008633 530 SAYNLFRKIK 539 (558)
Q Consensus 530 ~A~~~~~~m~ 539 (558)
+|.+++++|.
T Consensus 889 ~A~~~~~~~~ 898 (899)
T TIGR02917 889 EARKELDKLL 898 (899)
T ss_pred HHHHHHHHHh
Confidence 5555555543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=2.8e-23 Score=231.40 Aligned_cols=369 Identities=12% Similarity=0.054 Sum_probs=255.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVV 239 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 239 (558)
+.+..+|+.+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+.+ +.+..++..+
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 539 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILAL 539 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 3466677777888888888888888888777653 3355667777777777888888888888877654 3366777777
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 008633 240 LWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRID 319 (558)
Q Consensus 240 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 319 (558)
...+.+.|+.++|...++++....+.+...+..++..+.+.|++++|..+++.+.+.. +.+..+|..+..++...|+++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 618 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLN 618 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 8888888888888888887766666677777788888888888888888888877643 446677888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 320 DAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEML 399 (558)
Q Consensus 320 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (558)
+|...++.+.+.... +...+..+..+|.+.|++++|..+|+++.+.. +.+..++..++..+...|++++|.++++.+.
T Consensus 619 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 619 KAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888888766432 56677778888888888888888888887653 4456777888888888888888888888877
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHH
Q 008633 400 DRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEI 479 (558)
Q Consensus 400 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 479 (558)
+.+ +.+...+..+...+...|++++|...++.+.+.+ |+..++..+..++.+.|++++|.+.++.+.+.. +.+...
T Consensus 697 ~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~ 772 (899)
T TIGR02917 697 KQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVL 772 (899)
T ss_pred hhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 664 3455566666677777777777777777776653 333455556666666666666666666665543 345555
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 480 YEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
+..+...|...|+.++|...|+++++.. +.+..++..+...+...|+ ++|...++++.
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~ 830 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKAL 830 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 6666666666666666666666665543 2334455555555444444 44444444444
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=7.1e-22 Score=197.87 Aligned_cols=308 Identities=16% Similarity=0.138 Sum_probs=211.8
Q ss_pred HHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHH
Q 008633 243 LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD---SLTFSFLIEGLGRAGRID 319 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~ 319 (558)
+...|++++|...|+++....|.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34455666666666666554444555666666666666666666666666665422111 234556666666667777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 008633 320 DAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPN----MDTYTRLISGLLKSRKVADALEVF 395 (558)
Q Consensus 320 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~ 395 (558)
+|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...|..+...+.+.|++++|...+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 7777777666542 23455666677777777777777777777665432221 123445666667777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC
Q 008633 396 EEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPS 475 (558)
Q Consensus 396 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 475 (558)
+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+. .|
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 7776643 22344556666777777777777777777776542222456777888888889999999999988875 46
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhcCCchhhhhhc
Q 008633 476 DGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLA---SNKLESAYNLFRKIKIARQNDYARRLWR 552 (558)
Q Consensus 476 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 552 (558)
+...+..++..+.+.|++++|..+++++++. .|+..++..++..+.. .|+.+++..++++|.+.++.+++...+.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c~ 358 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRCR 358 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEECC
Confidence 6667788888999999999999999998876 5888888888877765 5688999999999999899988888888
Q ss_pred ccCC
Q 008633 553 SKGW 556 (558)
Q Consensus 553 ~~gw 556 (558)
.||.
T Consensus 359 ~cg~ 362 (389)
T PRK11788 359 NCGF 362 (389)
T ss_pred CCCC
Confidence 7774
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=1.1e-20 Score=189.36 Aligned_cols=301 Identities=12% Similarity=0.022 Sum_probs=162.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc
Q 008633 170 VKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFD---AESLNVVLWCLCQR 246 (558)
Q Consensus 170 i~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~ll~~~~~~ 246 (558)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|.++++.+.+.+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334556677888888888887764 23556777777777788888888888877776432211 24456666667777
Q ss_pred CCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 008633 247 LHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDS----LTFSFLIEGLGRAGRIDDAI 322 (558)
Q Consensus 247 ~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~ 322 (558)
|++++|..+|+++....+.+..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|.
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 77777777777766555556666666777777777777777777666654322211 12333444444555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008633 323 EVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRG 402 (558)
Q Consensus 323 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 402 (558)
+.++++.+.... +...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|+..|++++|...++++
T Consensus 201 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~---- 275 (389)
T PRK11788 201 ALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA---- 275 (389)
T ss_pred HHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH----
Confidence 555555443211 233444444555555555555555555543321111233444444444444444444444444
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 008633 403 IVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEY 482 (558)
Q Consensus 403 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 482 (558)
.+.. |+...+..++..+.+.|++++|..+++++.+. .|+...++.
T Consensus 276 -------------------------------~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~ 320 (389)
T PRK11788 276 -------------------------------LEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHR 320 (389)
T ss_pred -------------------------------HHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHH
Confidence 4432 23333344445555555555555555554443 345445555
Q ss_pred HHHHHHh---cCCHhHHHHHHHHHHhCCCCCC
Q 008633 483 VIAGLCN---IGQLENAVLVMEESLRKGFCPS 511 (558)
Q Consensus 483 li~~~~~---~g~~~~A~~~~~~m~~~g~~p~ 511 (558)
++..++. .|+.++++.++++|.++++.|+
T Consensus 321 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 321 LLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred HHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 4544443 3355555555555555444444
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=5.3e-20 Score=176.38 Aligned_cols=374 Identities=13% Similarity=0.097 Sum_probs=319.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHH-HH
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESL-NV 238 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~ 238 (558)
+.-..+|..+.+++-..|++++|+.+++.|.+.. +-.+..|..+..++...|+.+.|.+.|.+..+. .|+.... ..
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~ 189 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSD 189 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcc
Confidence 3456889999999999999999999999999874 236789999999999999999999999999885 4555443 44
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 008633 239 VLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD-SLTFSFLIEGLGRAGR 317 (558)
Q Consensus 239 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~ 317 (558)
+...+...|++++|...|.+..+..+-=.+.|+.|...+-..|+...|+..|++.++. .|+ ...|..|.+.|...+.
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhc
Confidence 5556667899999999998887766666788999999999999999999999999874 465 4678899999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 318 IDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPN-MDTYTRLISGLLKSRKVADALEVFE 396 (558)
Q Consensus 318 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 396 (558)
+++|...+.+....... ....+..|...|...|.+|-|+..|++..+. .|+ ...|+.|..++-..|++.+|.+.+.
T Consensus 268 ~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred chHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 99999999988776433 5678888999999999999999999999986 454 6789999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC
Q 008633 397 EMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSD 476 (558)
Q Consensus 397 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 476 (558)
+..... .-.....+.|...+...|.++.|..+|....+.. +--....+.|...|-++|++++|+..|++..+. .|+
T Consensus 345 kaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~ 420 (966)
T KOG4626|consen 345 KALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPT 420 (966)
T ss_pred HHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--Cch
Confidence 998863 2345677888999999999999999999988753 223567888999999999999999999999875 666
Q ss_pred H-HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchhhh
Q 008633 477 G-EIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIKIARQNDYARR 549 (558)
Q Consensus 477 ~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 549 (558)
. ..|+.+...|...|+.+.|+..+.+++.. .|. ...++.|...|-.+|+..+|++-++... .++||...
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL--klkPDfpd 491 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL--KLKPDFPD 491 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH--ccCCCCch
Confidence 4 48999999999999999999999999954 576 6889999999999999999999999987 46665543
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=2.2e-18 Score=181.35 Aligned_cols=331 Identities=12% Similarity=0.076 Sum_probs=267.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008633 167 NVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQR 246 (558)
Q Consensus 167 ~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 246 (558)
-.++..+.+.|++++|..+++....... -+...+..++.++...|++++|++.++++.+.. +.+...+..+...+...
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 3456677889999999999999988743 345667777777888999999999999998864 33667888888999999
Q ss_pred CCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 247 LHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFD 326 (558)
Q Consensus 247 ~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 326 (558)
|++++|...+++.....|.+...+..++..+...|++++|...++.+...... +...+..+ ..+...|++++|...++
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 99999999999998777778889999999999999999999999988765432 23333333 34788899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCC
Q 008633 327 TMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVAD----ALEVFEEMLDRG 402 (558)
Q Consensus 327 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~ 402 (558)
.+.+....++...+..+..++.+.|++++|+..++++.+.. +.+...+..+...+...|++++ |...+++..+..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 98877544455556666788899999999999999998764 4567788889999999999986 799999988763
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH-HHHH
Q 008633 403 IVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDG-EIYE 481 (558)
Q Consensus 403 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~ 481 (558)
+.+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|+..++.+.+. .|+. ..+.
T Consensus 281 -P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~ 356 (656)
T PRK15174 281 -SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNR 356 (656)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHH
Confidence 3356678888888999999999999999998864 445667778889999999999999999999875 3443 3344
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 482 YVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 482 ~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
.+..++...|+.++|...|+++.+.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4567789999999999999999876
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=1.4e-17 Score=175.75 Aligned_cols=367 Identities=13% Similarity=0.044 Sum_probs=270.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008633 166 YNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQ 245 (558)
Q Consensus 166 ~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 245 (558)
+......+.+.|++++|+..|++.... .|+...|..+..+|.+.|++++|++.+....+.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445566666777777777777776653 4566667777777777777777777777777653 2245566677777777
Q ss_pred cCCHhHHHHHHHHhh------------------------------cCCCCChhhHHHHHHH-------------------
Q 008633 246 RLHVGAASSLFNSMK------------------------------GKVLFNVMTYNIVISG------------------- 276 (558)
Q Consensus 246 ~~~~~~A~~~~~~m~------------------------------~~~~~~~~~~~~li~~------------------- 276 (558)
.|++++|...|.... ...+.+...+..+...
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 777777765443221 0111111111111000
Q ss_pred -----------H------HhcCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 008633 277 -----------W------SKLGQVVEMERVLKEIVAEG-FSP-DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDT 337 (558)
Q Consensus 277 -----------~------~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 337 (558)
. ...+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...+++..+.... +.
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cH
Confidence 0 12357899999999998764 233 3466788888889999999999999999887433 46
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008633 338 NAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPL 417 (558)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 417 (558)
..|..+...+...|++++|...|+++.+.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+...+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence 688889999999999999999999998764 4567889999999999999999999999998864 33456677778888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcC
Q 008633 418 CSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGE------IYEYVIAGLCNIG 491 (558)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g 491 (558)
.+.|++++|+..+++..+.. +.+...|+.+...+...|++++|++.|++..+..-..+.. .++..+..+...|
T Consensus 444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 89999999999999998753 4567889999999999999999999999988753111111 1222223344579
Q ss_pred CHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 492 QLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 492 ~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
++++|..+++++++.. |+ ...+..+...+.+.|++++|.+++++..+.
T Consensus 523 ~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 523 DFIEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999998764 44 567889999999999999999999998754
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=1.8e-17 Score=174.49 Aligned_cols=336 Identities=13% Similarity=0.069 Sum_probs=277.0
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHH
Q 008633 197 DLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISG 276 (558)
Q Consensus 197 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~ 276 (558)
+..-...++..+.+.|++++|..+++........ +...+..++.+....|+++.|...|+++....|.+...+..+...
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3344566778888999999999999999876544 455666667777889999999999999998888889999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008633 277 WSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDEC 356 (558)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 356 (558)
+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHH
Confidence 999999999999999998853 335677888999999999999999999988777544 33344333 347889999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH----HHHHHHH
Q 008633 357 MKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHA----AMMMYKK 432 (558)
Q Consensus 357 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~----a~~~~~~ 432 (558)
...++.+.+..-.++...+..+..++...|++++|+..++++.+.. +.+...+..+...+...|++++ |...+++
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 9999998876433445555666788999999999999999999864 3456677788888999999986 8999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 008633 433 ARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSR 512 (558)
Q Consensus 433 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 512 (558)
+.+.. +.+...+..+...+...|++++|+..+++..+.. +.+...+..+..++.+.|++++|+..++++.+. .|+.
T Consensus 276 Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~ 351 (656)
T PRK15174 276 ALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVT 351 (656)
T ss_pred HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccc
Confidence 98864 4467889999999999999999999999999864 445667888899999999999999999999976 4554
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 513 -LVYSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 513 -~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
..+..+..++...|+.++|.+.+++..+.
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34445677899999999999999998654
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=1.5e-16 Score=178.90 Aligned_cols=383 Identities=11% Similarity=0.031 Sum_probs=250.1
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHH------------HHHHHHHHH
Q 008633 144 EAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNP-DLETL------------SIVMDSFIR 210 (558)
Q Consensus 144 ~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~-~~~t~------------~~li~~~~~ 210 (558)
+.|...|+-+.+.. +.+...+..+..++.+.|++++|...|++..+..... +...+ ......+.+
T Consensus 286 ~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~ 363 (1157)
T PRK11447 286 GKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALK 363 (1157)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 56666666666542 3477888999999999999999999999988764221 11111 122445678
Q ss_pred hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 008633 211 AGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVL 290 (558)
Q Consensus 211 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 290 (558)
.|++++|++.|+++.+.. +.+...+..+..++...|++++|++.|++.....|.+...+..+...|. .++.++|..++
T Consensus 364 ~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l 441 (1157)
T PRK11447 364 ANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFI 441 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHH
Confidence 899999999999998764 3356777888899999999999999999887665666666665555543 23445555444
Q ss_pred HHHHHcCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 291 KEIVAEGFS--------PDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKG 362 (558)
Q Consensus 291 ~~m~~~g~~--------p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 362 (558)
+.+...... .....+..+...+...|++++|.+.+++..+.... +...+..+...|.+.|++++|...+++
T Consensus 442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~ 520 (1157)
T PRK11447 442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRR 520 (1157)
T ss_pred HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 433211000 00112233334444555555555555555544322 334444455555555555555555555
Q ss_pred hhhCCCCCCHHHHH--------------------------------------------HHHHHHHhcCCHHHHHHHHHHH
Q 008633 363 MSSYNCEPNMDTYT--------------------------------------------RLISGLLKSRKVADALEVFEEM 398 (558)
Q Consensus 363 m~~~~~~p~~~~~~--------------------------------------------~li~~~~~~g~~~~A~~~~~~m 398 (558)
+.+.. +.+...+. .+...+...|+.++|..+++.
T Consensus 521 al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~- 598 (1157)
T PRK11447 521 LAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ- 598 (1157)
T ss_pred HHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-
Confidence 54321 11222221 233445566666666666551
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHH
Q 008633 399 LDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGE 478 (558)
Q Consensus 399 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 478 (558)
.+.+...+..+...+...|++++|+..|+++.+.. +.+...+..++..|...|++++|++.++...+.. +.+..
T Consensus 599 ----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~ 672 (1157)
T PRK11447 599 ----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLN 672 (1157)
T ss_pred ----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChH
Confidence 23444556667777888899999999999888864 4467888888889999999999999999877642 33455
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 479 IYEYVIAGLCNIGQLENAVLVMEESLRKGF--CP---SRLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
.+..+..++...|++++|..++++++.... .| +...+..+...+...|++++|.+.+++..
T Consensus 673 ~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 673 TQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 677778888889999999999998886521 12 23466667888889999999999988875
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=1.1e-16 Score=180.00 Aligned_cols=367 Identities=9% Similarity=-0.002 Sum_probs=277.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC-CHHHH-----------
Q 008633 169 IVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKF-DAESL----------- 236 (558)
Q Consensus 169 li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~----------- 236 (558)
....+...|++++|+..|++..+.. +.+..++..+...+.+.|++++|++.|++..+..... ....+
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 3556778999999999999998864 3478899999999999999999999999998754322 11111
Q ss_pred -HHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008633 237 -NVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRA 315 (558)
Q Consensus 237 -~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 315 (558)
......+.+.|++++|...|+++....|.+...+..+...+...|++++|++.|++..+.. +.+...+..+...+. .
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-h
Confidence 1234567789999999999999988777788899999999999999999999999999763 234556666666664 5
Q ss_pred CCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 316 GRIDDAIEVFDTMKEKGCG--------PDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRK 387 (558)
Q Consensus 316 g~~~~a~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 387 (558)
++.++|..+++.+...... .....+..+...+...|++++|++.|++..+.. +-+...+..+...|.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 6789999888765432100 012345667788999999999999999998864 3456778889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-------------------------------
Q 008633 388 VADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKV------------------------------- 436 (558)
Q Consensus 388 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------------------------------- 436 (558)
+++|...++++.+... .+...+..+...+...++.++|+..++.+...
T Consensus 511 ~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 9999999999887532 22222222222233344444444443322100
Q ss_pred --------CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 008633 437 --------GCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGF 508 (558)
Q Consensus 437 --------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 508 (558)
..+.+...+..+...+.+.|++++|++.|++..+.. +.+...+..++..+...|++++|...++.+.+..
T Consensus 590 ~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~- 667 (1157)
T PRK11447 590 AEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA- 667 (1157)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-
Confidence 124455667778888999999999999999999864 5567889999999999999999999999887652
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 008633 509 CPSRLVYSKLSNKLLASNKLESAYNLFRKIKIAR 542 (558)
Q Consensus 509 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 542 (558)
+.+..++..+..++...|++++|.++++++....
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 2346677888899999999999999999988643
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=2e-16 Score=170.20 Aligned_cols=372 Identities=11% Similarity=0.019 Sum_probs=287.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVV 239 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 239 (558)
+.+...+..+...+...|++++|..+|++..+.. +.+...+..+...+...|+.++|+..++++.+.. +.+.. +..+
T Consensus 46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~l 122 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLAL 122 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHH
Confidence 4566779999999999999999999999988763 3457778888899999999999999999998763 34566 8888
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH
Q 008633 240 LWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDS------LTFSFLIEGLG 313 (558)
Q Consensus 240 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~~~~ 313 (558)
..++...|+.++|+..++++....|.+...+..+...+...|..++|++.++.... .|+. .....++....
T Consensus 123 a~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~ 199 (765)
T PRK10049 123 AYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSF 199 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999988888888888899999999999999998876653 2332 11122222222
Q ss_pred -----hcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CCHHHHHHH
Q 008633 314 -----RAGRI---DDAIEVFDTMKEK-GCGPDTN-AY----NAVISNYISVGDFDECMKYYKGMSSYNCE-PNMDTYTRL 378 (558)
Q Consensus 314 -----~~g~~---~~a~~~~~~m~~~-g~~p~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l 378 (558)
..+++ ++|++.++.+.+. ...|+.. .+ ...+.++...|++++|+..|+++.+.+-. |+. .-..+
T Consensus 200 ~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~l 278 (765)
T PRK10049 200 MPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWV 278 (765)
T ss_pred ccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHH
Confidence 22234 7788888888865 2222221 11 11133456779999999999999987522 332 22335
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-----------CCC---
Q 008633 379 ISGLLKSRKVADALEVFEEMLDRGIVP---STGTITSFLEPLCSYGPPHAAMMMYKKARKVGC-----------KLS--- 441 (558)
Q Consensus 379 i~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~--- 441 (558)
...|...|++++|+..|+++.+..... .......+..++...|++++|.++++.+.+... .|+
T Consensus 279 a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~ 358 (765)
T PRK10049 279 ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW 358 (765)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence 778999999999999999987653211 124455666678899999999999999887531 123
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 008633 442 LTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSN 520 (558)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~ 520 (558)
...+..+...+...|+.++|+++++++.... +.+...+..+...+...|++++|++.++++++. .|+ ...+..++.
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~ 435 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAW 435 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHH
Confidence 2355677788999999999999999998764 567788999999999999999999999999976 466 677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHh
Q 008633 521 KLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 521 ~~~~~g~~~~A~~~~~~m~~~ 541 (558)
.+.+.|++++|..+++++.+.
T Consensus 436 ~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 436 TALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999863
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=3.7e-16 Score=165.09 Aligned_cols=347 Identities=13% Similarity=0.019 Sum_probs=266.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHh
Q 008633 200 TLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSK 279 (558)
Q Consensus 200 t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~ 279 (558)
.+......+.+.|++++|++.|++..+. .|+...|..+..+|.+.|++++|++.++......|.+...|..+..+|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4556677888999999999999999874 56788899999999999999999999999988777788899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCC----------------------------CC----CHHHHHHH-------------------
Q 008633 280 LGQVVEMERVLKEIVAEGF----------------------------SP----DSLTFSFL------------------- 308 (558)
Q Consensus 280 ~g~~~~A~~~~~~m~~~g~----------------------------~p----~~~t~~~l------------------- 308 (558)
.|++++|+..|......+- .| ........
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 9999999876654432110 00 00000000
Q ss_pred --------HHH------HHhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH
Q 008633 309 --------IEG------LGRAGRIDDAIEVFDTMKEKG-CGP-DTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNM 372 (558)
Q Consensus 309 --------l~~------~~~~g~~~~a~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 372 (558)
+.. ....+++++|.+.|+...+.+ ..| ....+..+...+...|++++|+..|++..+.. +-+.
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 000 012357889999999998765 223 45678888899999999999999999998763 3346
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008633 373 DTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRL 452 (558)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 452 (558)
..|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+...+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence 688889999999999999999999998864 3456778888888999999999999999998865 44677788888999
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcC
Q 008633 453 SGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSR------LVYSKLSNKLLASN 526 (558)
Q Consensus 453 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~l~~~~~~~g 526 (558)
.+.|++++|+..+++..+.. +.+...|+.+...+...|++++|+..|++.++.....+. ..+...+..+...|
T Consensus 444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 99999999999999998753 446788999999999999999999999999875311111 11222223344579
Q ss_pred CHHHHHHHHHHHHHhcCCchhhhhhccc
Q 008633 527 KLESAYNLFRKIKIARQNDYARRLWRSK 554 (558)
Q Consensus 527 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 554 (558)
++++|.+++++..+. .|+....|...
T Consensus 523 ~~~eA~~~~~kAl~l--~p~~~~a~~~l 548 (615)
T TIGR00990 523 DFIEAENLCEKALII--DPECDIAVATM 548 (615)
T ss_pred hHHHHHHHHHHHHhc--CCCcHHHHHHH
Confidence 999999999998754 45444444333
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=6.6e-17 Score=155.44 Aligned_cols=357 Identities=14% Similarity=0.079 Sum_probs=296.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHh
Q 008633 171 KALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVG 250 (558)
Q Consensus 171 ~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~ 250 (558)
.++.+..+.+....--....+. .+.-.++|..+.+.+-..|+++.|+..++.+.+... -....|..+..++...|+.+
T Consensus 90 ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~ 167 (966)
T KOG4626|consen 90 AIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLE 167 (966)
T ss_pred hhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCc
Confidence 3455555555544433333333 233568999999999999999999999999998642 26788999999999999999
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 251 AASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD-SLTFSFLIEGLGRAGRIDDAIEVFDTMK 329 (558)
Q Consensus 251 ~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 329 (558)
.|.+.|.+...-.|......+.+...+-..|+.++|...|.+..+. .|. .+.|+.|.-.+-..|+...|+.-|++..
T Consensus 168 ~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv 245 (966)
T KOG4626|consen 168 LAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV 245 (966)
T ss_pred ccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhh
Confidence 9999998887765545555666777777789999999999988875 344 3568888888899999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HH
Q 008633 330 EKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPS-TG 408 (558)
Q Consensus 330 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~ 408 (558)
+.... -...|-.|...|...+.++.|+..|.+..... +-....|..|...|...|..+-|+..+++.++. .|+ ..
T Consensus 246 kldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~ 321 (966)
T KOG4626|consen 246 KLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPD 321 (966)
T ss_pred cCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchH
Confidence 87543 35578889999999999999999999887653 334677888888899999999999999999885 455 57
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 008633 409 TITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSD-GEIYEYVIAGL 487 (558)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~ 487 (558)
.|+.+..++-..|++.+|++.|.+..... +....+.+.|...|...|.+++|..+|....+. .|. ...++.|...|
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~ 398 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIY 398 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHH
Confidence 89999999999999999999999998864 445678888999999999999999999998875 344 45789999999
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 488 CNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 488 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
-++|++++|+..+++++ .+.|+ ...|+.+.+.|-..|+.++|.+.+.+...
T Consensus 399 kqqgnl~~Ai~~Ykeal--rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 399 KQQGNLDDAIMCYKEAL--RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred HhcccHHHHHHHHHHHH--hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 99999999999999999 45788 68999999999999999999999988874
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=1.7e-15 Score=162.97 Aligned_cols=381 Identities=10% Similarity=0.027 Sum_probs=287.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVV 239 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 239 (558)
+-+...-.-.+.+....|+.++|++++.+..... +.+...+..+...+...|++++|.+++++..+.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3444555566778889999999999999998632 4566789999999999999999999999988763 3356778888
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 008633 240 LWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRID 319 (558)
Q Consensus 240 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 319 (558)
..++...|+.++|...+++.....|.+.. +..+...+...|+.++|+..++++.+.. +-+...+..+..++...+..+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Confidence 99999999999999999999888777888 9999999999999999999999999864 224556667788888899999
Q ss_pred HHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHhhhC-CCCCCHH-HHH----HHH
Q 008633 320 DAIEVFDTMKEKGCGPDT------NAYNAVISNYI-----SVGDF---DECMKYYKGMSSY-NCEPNMD-TYT----RLI 379 (558)
Q Consensus 320 ~a~~~~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-~~~p~~~-~~~----~li 379 (558)
+|.+.++.... .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .+. ..+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 99998886654 2221 11222233322 22234 7889899988854 1223321 111 113
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHcC
Q 008633 380 SGLLKSRKVADALEVFEEMLDRGIV-PSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKL---SLTAYKLLLRRLSGF 455 (558)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~ 455 (558)
.++...|++++|+..|+.+.+.+.. |+... ..+..+|...|++++|+..|+++.+..... .......+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~-~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPWAQ-RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHHHH-HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 4556789999999999999987632 43322 224667899999999999999987643211 235566677788999
Q ss_pred CChhHHHHHHHHHHHCC-----------CCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008633 456 GKCGMLLDLWHEMQESG-----------YPSD---GEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNK 521 (558)
Q Consensus 456 g~~~~A~~~~~~m~~~~-----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 521 (558)
|++++|..+++.+.+.. -.|+ ...+..+...+...|+.++|++.++++.... +-+...+..+...
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l 402 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASV 402 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 99999999999998652 1123 2345667788899999999999999998763 3457899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCchhhhhh
Q 008633 522 LLASNKLESAYNLFRKIKIARQNDYARRLW 551 (558)
Q Consensus 522 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 551 (558)
+...|++++|++.+++..+ ..|+...++
T Consensus 403 ~~~~g~~~~A~~~l~~al~--l~Pd~~~l~ 430 (765)
T PRK10049 403 LQARGWPRAAENELKKAEV--LEPRNINLE 430 (765)
T ss_pred HHhcCCHHHHHHHHHHHHh--hCCCChHHH
Confidence 9999999999999999885 446654444
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=6.8e-14 Score=147.98 Aligned_cols=385 Identities=8% Similarity=0.010 Sum_probs=235.4
Q ss_pred HHHHHHHHHHhcCCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 008633 144 EAMVLFFNWAIKHPNVAKDV--KSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQML 221 (558)
Q Consensus 144 ~~~~~ff~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~ 221 (558)
+.|...|+-+.+.. |+. ..+ .++..++..|+.++|+..+++.... ..........+...+...|++++|+++|
T Consensus 51 ~~Al~~L~qaL~~~---P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely 125 (822)
T PRK14574 51 APVLDYLQEESKAG---PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALALW 125 (822)
T ss_pred HHHHHHHHHHHhhC---ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35555555555432 332 233 8888888889999999999988722 1223444444566888889999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 008633 222 GRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD 301 (558)
Q Consensus 222 ~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 301 (558)
+++.+.... +...+..++..+...++.++|++.++++....+ +...+-.++..+...++..+|++.++++.+.. +-+
T Consensus 126 ~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp-~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n 202 (822)
T PRK14574 126 QSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDP-TVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTS 202 (822)
T ss_pred HHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc-chHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCC
Confidence 999887533 567777888888999999999999998876544 44455555555555666766999999998874 335
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------------------C-----------------------------
Q 008633 302 SLTFSFLIEGLGRAGRIDDAIEVFDTMKEK--------------------G----------------------------- 332 (558)
Q Consensus 302 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--------------------g----------------------------- 332 (558)
...+..++.++.+.|-...|.++..+-... +
T Consensus 203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~ 282 (822)
T PRK14574 203 EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWG 282 (822)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhcc
Confidence 667788888889999888888775532100 0
Q ss_pred CCCCH-HH----HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----
Q 008633 333 CGPDT-NA----YNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRG----- 402 (558)
Q Consensus 333 ~~p~~-~~----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----- 402 (558)
-.|.. .. .--.+-++...|++.++++.|+.+...+.+.-..+-.++.++|...+++++|+.++.++....
T Consensus 283 ~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~ 362 (822)
T PRK14574 283 KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFR 362 (822)
T ss_pred CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccC
Confidence 00110 01 111233445556666666666666655543333455566666666666666666666664432
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-----------CC--C-HHHHHHHHHHHHcCCChhHHHHHHHHH
Q 008633 403 IVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGC-----------KL--S-LTAYKLLLRRLSGFGKCGMLLDLWHEM 468 (558)
Q Consensus 403 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----------~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m 468 (558)
..++......|.-++...+++++|..+++.+.+... .| | ...+..++..+...|+..+|++.++++
T Consensus 363 ~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l 442 (822)
T PRK14574 363 NSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDL 442 (822)
T ss_pred CCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111222234555556666666666666666655211 01 1 122333455556666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 469 QESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 469 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
.... +-|......+...+...|++.+|...++.+... .|+ ..+....+.++...|++++|..+.+.+.
T Consensus 443 ~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 443 SSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5543 445666666666666666666666666555433 333 4555556666666666666666666655
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=2e-13 Score=126.32 Aligned_cols=238 Identities=13% Similarity=0.211 Sum_probs=113.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVL 240 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 240 (558)
.+..+|.+||.++|+--..+.|.+++++......+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHH
Confidence 344555555555555555555555555555544455555555555443222 1144555555555555555555555
Q ss_pred HHHHhcCCHhHHH----HHHHHhhc-CCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHH----cCCCC----CHHHHH
Q 008633 241 WCLCQRLHVGAAS----SLFNSMKG-KVLFNVMTYNIVISGWSKLGQVVE-MERVLKEIVA----EGFSP----DSLTFS 306 (558)
Q Consensus 241 ~~~~~~~~~~~A~----~~~~~m~~-~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~p----~~~t~~ 306 (558)
.+..+.|+++.|. +++.+|++ ++.|...+|..+|..+++.++..+ |..++.++.. ..++| |..-|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 5555555544433 23333433 355555555555555555554432 2233333322 11111 223344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 008633 307 FLIEGLGRAGRIDDAIEVFDTMKEKG----CGPD---TNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLI 379 (558)
Q Consensus 307 ~ll~~~~~~g~~~~a~~~~~~m~~~g----~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 379 (558)
..|..|.+..+.+-|.++..-+.... +.|+ ..-|..+..+.|.....+.-...|+.|.-.-+-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 45555555555555555544433221 1111 1223344445555555555555555555444445555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC
Q 008633 380 SGLLKSRKVADALEVFEEMLDRG 402 (558)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~m~~~~ 402 (558)
++.--.|.++-.-+++.+++..|
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhh
Confidence 55555555555555555555544
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=8.8e-14 Score=128.63 Aligned_cols=405 Identities=15% Similarity=0.184 Sum_probs=261.8
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH---hcCChHHHHHHHHHHHHCC-------------
Q 008633 130 DVVGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALG---RRKFFDFMCNVLSDMAKEG------------- 193 (558)
Q Consensus 130 ~~v~~~l~~~~~~~~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~---~~~~~~~a~~l~~~m~~~g------------- 193 (558)
.-+.+++..+... ++...+-. +++.++..+...--.+++.-+ ..+-.-.-|+.|-.|.+.|
T Consensus 120 ~nL~kmIS~~EvK-Ds~ilY~~--m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 120 NNLLKMISSREVK-DSCILYER--MRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred hHHHHHHhhcccc-hhHHHHHH--HHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 3344555555443 44444433 334455555555444444332 2233334455666665443
Q ss_pred ------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhc-CCCCC
Q 008633 194 ------VNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKG-KVLFN 266 (558)
Q Consensus 194 ------~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-~~~~~ 266 (558)
.+-+..||..+|.++|+--..+.|.+++++......+.+..+||.+|.+-.-..+ .+++.+|.. +..||
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPN 272 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCc
Confidence 1234567888888888888888888888888777677788888888766433322 556666653 47788
Q ss_pred hhhHHHHHHHHHhcCCHHHH----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHH----HCCCCC--
Q 008633 267 VMTYNIVISGWSKLGQVVEM----ERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDD-AIEVFDTMK----EKGCGP-- 335 (558)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-a~~~~~~m~----~~g~~p-- 335 (558)
..|+|+++.+..+.|+++.| .+++.+|++-|+.|...+|..+|..+++.++..+ +..+..++. .+.++|
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 88888888888888877654 4677788888888888888888888887777644 333333332 222222
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 008633 336 --DTNAYNAVISNYISVGDFDECMKYYKGMSSYN----CEPN---MDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPS 406 (558)
Q Consensus 336 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 406 (558)
|...|...+..|....+.+-|.++-.-+.... +.|+ ..-|..+....|+....+.-...|+.|+-.-.-|+
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~ 432 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH 432 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC
Confidence 44566667777778888888877766554321 2233 23456677777888888888888888887777788
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-Ch--------hH-----HHHHH-------
Q 008633 407 TGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFG-KC--------GM-----LLDLW------- 465 (558)
Q Consensus 407 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~--------~~-----A~~~~------- 465 (558)
..+...++++.-..|.++-.-+++..++..|.......-.-++..+++.. +. .. |..++
T Consensus 433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~ 512 (625)
T KOG4422|consen 433 SQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQP 512 (625)
T ss_pred chhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 88888888888888888888888888888776666555555666666554 21 11 11111
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 466 HEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGF----CPSRLVYSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 466 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
.+|..... .....+...-.+.+.|+.++|.+++....+++- .|.......+++.-........|...++-|...
T Consensus 513 ~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 513 IRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred HHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 12222323 334566666777888888888888888765532 244455556677777888888888888888654
Q ss_pred cC
Q 008633 542 RQ 543 (558)
Q Consensus 542 ~~ 543 (558)
+.
T Consensus 591 n~ 592 (625)
T KOG4422|consen 591 NL 592 (625)
T ss_pred Cc
Confidence 44
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=1.1e-12 Score=139.02 Aligned_cols=350 Identities=10% Similarity=0.016 Sum_probs=258.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008633 164 KSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCL 243 (558)
Q Consensus 164 ~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~ 243 (558)
.....+...+...|++++|+++|+++.+.. +-+...+..++..+...++.++|++.++++.+. .|+...+..++..+
T Consensus 103 ~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~ 179 (822)
T PRK14574 103 RGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLN 179 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHH
Confidence 333444667888899999999999998874 335677778888889999999999999998875 45555555555555
Q ss_pred HhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH--------------------HcC------
Q 008633 244 CQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIV--------------------AEG------ 297 (558)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------------------~~g------ 297 (558)
...++..+|++.++++....|.+...+..+..++.+.|-...|.++..+-. +.+
T Consensus 180 ~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred HhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccccccc
Confidence 556666669999999988888888888999999999999888887654221 001
Q ss_pred -----------------------CCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008633 298 -----------------------FSPDSL-----TFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYIS 349 (558)
Q Consensus 298 -----------------------~~p~~~-----t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 349 (558)
-.|... ...-.+-++...|++.++++.++.+...|.+....+-..+.++|..
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~ 339 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID 339 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Confidence 112111 1112344567788899999999999988866555677888999999
Q ss_pred cCCHHHHHHHHHHhhhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCCH---HHH
Q 008633 350 VGDFDECMKYYKGMSSYN-----CEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGI-----------VPST---GTI 410 (558)
Q Consensus 350 ~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~~---~~~ 410 (558)
.++.++|+.+|+++.... ..++......|..+|...+++++|..+++++.+... .|+. ..+
T Consensus 340 ~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~ 419 (822)
T PRK14574 340 RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQ 419 (822)
T ss_pred cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHH
Confidence 999999999999986542 123444467888999999999999999999987311 1222 233
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008633 411 TSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNI 490 (558)
Q Consensus 411 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 490 (558)
..++..+...|+..+|++.++.+.... +-|......+.+.+...|.+.+|+..++...... +-+..+....+.++...
T Consensus 420 ~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 420 TLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMAL 497 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhh
Confidence 445666778899999999999987754 6678888888999999999999999997776652 44556777788888889
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008633 491 GQLENAVLVMEESLRKGFCPSRLVYSKLSN 520 (558)
Q Consensus 491 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 520 (558)
|++++|..+.+.+.+. .|+......|-+
T Consensus 498 ~e~~~A~~~~~~l~~~--~Pe~~~~~~l~r 525 (822)
T PRK14574 498 QEWHQMELLTDDVISR--SPEDIPSQELDR 525 (822)
T ss_pred hhHHHHHHHHHHHHhh--CCCchhHHHHHH
Confidence 9999999999888865 576554444443
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.71 E-value=5.6e-12 Score=136.41 Aligned_cols=383 Identities=13% Similarity=0.057 Sum_probs=267.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHH------------------------------HH
Q 008633 158 NVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVN-PDLETLSIV------------------------------MD 206 (558)
Q Consensus 158 ~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~-~~~~t~~~l------------------------------i~ 206 (558)
..+.+...+..++..|.+.|+.++|..+++++...-.. |...++.-+ +.
T Consensus 242 ~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (987)
T PRK09782 242 GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLP 321 (987)
T ss_pred hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHH
Confidence 44467788888899999999999999888888644211 222222221 33
Q ss_pred HHHHhCCHHHHHHHHH-----------------------------HHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 008633 207 SFIRAGQVYKAIQMLG-----------------------------RLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFN 257 (558)
Q Consensus 207 ~~~~~g~~~~A~~~~~-----------------------------~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~ 257 (558)
.+.+.++++.++++.. .|.+. .+-+....--+.-...+.|+.++|..+|+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~ 400 (987)
T PRK09782 322 VLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLL 400 (987)
T ss_pred HHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 4445555554444421 11110 01133333334444567788999999998
Q ss_pred HhhcC---CCCChhhHHHHHHHHHhcCC---HHHHHHH----------------------HHHHHHc-CC-CC--CHHHH
Q 008633 258 SMKGK---VLFNVMTYNIVISGWSKLGQ---VVEMERV----------------------LKEIVAE-GF-SP--DSLTF 305 (558)
Q Consensus 258 ~m~~~---~~~~~~~~~~li~~~~~~g~---~~~A~~~----------------------~~~m~~~-g~-~p--~~~t~ 305 (558)
..... ...+....+-++..|.+.+. ..++..+ .+..... +. ++ +...|
T Consensus 401 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~ 480 (987)
T PRK09782 401 QRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAW 480 (987)
T ss_pred HhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHH
Confidence 87542 22234455567777777655 3333222 1111111 11 23 56677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc
Q 008633 306 SFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKS 385 (558)
Q Consensus 306 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 385 (558)
..+..++.. ++.++|...+.+..... |+......+...+...|++++|...|+++... +|+...+..+..++.+.
T Consensus 481 ~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~ 555 (987)
T PRK09782 481 NRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAA 555 (987)
T ss_pred HHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHC
Confidence 777777766 88889999888877663 45444444556667999999999999998654 45556677778889999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 008633 386 RKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLW 465 (558)
Q Consensus 386 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 465 (558)
|+.++|...+++..+.+ +.+...+..+.......|++++|...+++..+.. |+...|..+...+.+.|+.++|+..+
T Consensus 556 Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l 632 (987)
T PRK09782 556 GNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDL 632 (987)
T ss_pred CCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999998864 2233333334444456699999999999998865 56888999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc
Q 008633 466 HEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQND 545 (558)
Q Consensus 466 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 545 (558)
++..+.. +.+...++.+...+...|+.++|+..++++++.. +-+...+..+..++...|++++|...+++..+ ..|
T Consensus 633 ~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P 708 (987)
T PRK09782 633 RAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID--DID 708 (987)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCC
Confidence 9999875 5567788899999999999999999999999763 23478899999999999999999999999984 445
Q ss_pred hhhhhhcc
Q 008633 546 YARRLWRS 553 (558)
Q Consensus 546 ~~~~~~~~ 553 (558)
+...+-..
T Consensus 709 ~~a~i~~~ 716 (987)
T PRK09782 709 NQALITPL 716 (987)
T ss_pred CCchhhhh
Confidence 54444333
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.68 E-value=2.6e-12 Score=138.93 Aligned_cols=352 Identities=9% Similarity=0.004 Sum_probs=269.9
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC---Hh
Q 008633 176 RKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDF--GLKFDAESLNVVLWCLCQRLH---VG 250 (558)
Q Consensus 176 ~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~ll~~~~~~~~---~~ 250 (558)
.+...++...++.|.+.. +-+......+--...+.|+.++|.++++..... ...++....+.++..|.+.+. ..
T Consensus 355 ~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 355 TRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred cCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 466667777777776652 236666666666677899999999999998762 123355566688888887766 33
Q ss_pred HHHHH-------------------------HHHhhcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 008633 251 AASSL-------------------------FNSMKGKVLF--NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSL 303 (558)
Q Consensus 251 ~A~~~-------------------------~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 303 (558)
++..+ +.......|+ +...|..+..++.. ++.++|...+.+.... .|+..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~ 510 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAW 510 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchH
Confidence 33222 1112222355 77888999988887 8999999988887765 36765
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 008633 304 TFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLL 383 (558)
Q Consensus 304 t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 383 (558)
....+...+...|++++|...++++... +|+...+..+...+.+.|+.++|...+++..+.+ +.+...+..+.....
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~ 587 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHH
Confidence 5545556667899999999999998665 3444556677888999999999999999998764 333344444444555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 008633 384 KSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLD 463 (558)
Q Consensus 384 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 463 (558)
..|++++|...+++..+. .|+...+..+..++.+.|+.++|+..+++..+.. +.+...++.+...+...|+.++|+.
T Consensus 588 ~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 588 IPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred hCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 669999999999999886 4678888888899999999999999999999875 5567888888889999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 464 LWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 464 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
.+++..+.. +-+...+..+..++...|++++|...+++.++. .|+ ..+.........+..+++.|.+-+++...
T Consensus 665 ~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 665 MLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999998864 456778999999999999999999999999976 466 46666777788888888888888777653
No 27
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=1.9e-12 Score=128.74 Aligned_cols=283 Identities=12% Similarity=0.066 Sum_probs=165.9
Q ss_pred cCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHH
Q 008633 246 RLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFS--FLIEGLGRAGRIDDAIE 323 (558)
Q Consensus 246 ~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~ 323 (558)
.|+++.|.+.+.......+.....|........+.|+++.|.+.+.++.+. .|+...+. .....+...|++++|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 456666665555443321111222333344446666666666666666553 33432222 22445566666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 324 VFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNM-------DTYTRLISGLLKSRKVADALEVFE 396 (558)
Q Consensus 324 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~ 396 (558)
.++.+.+.... +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 66666666533 5556666666666667777777666666665433211 122222333333334444444444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC
Q 008633 397 EMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSD 476 (558)
Q Consensus 397 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 476 (558)
.+.+. .+.+......+...+...|+.++|.+++++..+. .++.... ++.+....++.+++++..+...+.. +-|
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCC
Confidence 44322 2335555666666777777777777777766663 3343221 2223334577777777777777653 445
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 477 GEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
...+.++...+.+.|++++|.+.|+.+.+. .|+..++..+..++.+.|+.++|.+++++-.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 556777778888888888888888888765 5777777788888888888888888877654
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.64 E-value=1e-11 Score=125.55 Aligned_cols=373 Identities=11% Similarity=0.066 Sum_probs=285.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008633 164 KSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCL 243 (558)
Q Consensus 164 ~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~ 243 (558)
...-...+.+...|++++|..++.+..+.. +-+...|.+|...|-..|+.+++...+-.+-... +-|...|..+....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls 217 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 333334444455699999999999999885 4578899999999999999999998876665544 44778999999999
Q ss_pred HhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCCHH
Q 008633 244 CQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTF----SFLIEGLGRAGRID 319 (558)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~~~~~~g~~~ 319 (558)
.+.|.++.|.-.|.+.....|++...+---+..|-+.|+...|.+.|.++.....+.|..-+ -.+++.+...++-+
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999888889888888899999999999999999999986432232222 33456677778889
Q ss_pred HHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH----------------------H
Q 008633 320 DAIEVFDTMKEKG-CGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTY----------------------T 376 (558)
Q Consensus 320 ~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----------------------~ 376 (558)
.|.+.++.....+ -..+...++.++..|.+...++.|......+......+|..-| .
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 9999998887632 2235557889999999999999999988887762222222111 1
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008633 377 ----RLISGLLKSRKVADALEVFEEMLDRGI--VPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLR 450 (558)
Q Consensus 377 ----~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 450 (558)
.+.-++...+..+....+.....+..+ .-+...|.-+..++...|++..|+.++..+......-+...|-.+..
T Consensus 378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 378 LRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred chhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 122233444444444445555555553 33456788899999999999999999999998766667889999999
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH--------hCCCCCCHHHHHHHHHHH
Q 008633 451 RLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESL--------RKGFCPSRLVYSKLSNKL 522 (558)
Q Consensus 451 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~l~~~~ 522 (558)
+|...|.+++|.+.|+...... +-+...--.|-..+.+.|+.++|.+.+..+. ..+..|+..........+
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 9999999999999999998763 3345566667778899999999999999854 234566677777888899
Q ss_pred HhcCCHHHHHHHHHHHH
Q 008633 523 LASNKLESAYNLFRKIK 539 (558)
Q Consensus 523 ~~~g~~~~A~~~~~~m~ 539 (558)
.+.|+.++-......|.
T Consensus 537 ~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 537 FQVGKREEFINTASTLV 553 (895)
T ss_pred HHhhhHHHHHHHHHHHH
Confidence 99999988766665554
No 29
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=2.5e-12 Score=128.60 Aligned_cols=291 Identities=10% Similarity=-0.031 Sum_probs=167.0
Q ss_pred cCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008633 246 RLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVF 325 (558)
Q Consensus 246 ~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 325 (558)
.|+++.|.+.+.+.....+-....+-.......+.|+++.|.+.+.+..+....+...........+...|+++.|...+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56666666666555443332333344445556666666666666666654321111122223355555666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH-HHHH---HHHhcCCHHHHHHHHHHHHHC
Q 008633 326 DTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYT-RLIS---GLLKSRKVADALEVFEEMLDR 401 (558)
Q Consensus 326 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~---~~~~~g~~~~A~~~~~~m~~~ 401 (558)
+.+.+..+. +..+...+...|...|++++|.+++..+.+.+.. +...+. .-.. ++...+..+++.+.+..+.+.
T Consensus 177 ~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 177 DKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 666666433 4555666666666666666666666666665432 222221 1111 112222233333344444433
Q ss_pred CC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH
Q 008633 402 GI---VPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAY-KLLLRRLSGFGKCGMLLDLWHEMQESGYPSDG 477 (558)
Q Consensus 402 ~~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 477 (558)
.. +.+...+..+...+...|+.++|.+++++..+.........+ ....-.....++.+.+.+.++...+.. +-|.
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~ 333 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKP 333 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCCh
Confidence 21 125556666666667777777777777776664321111111 111111233466677777777776542 3344
Q ss_pred --HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 478 --EIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 478 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-.
T Consensus 334 ~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 334 KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56778888999999999999999954433446888888899999999999999999998754
No 30
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.62 E-value=4.8e-12 Score=128.74 Aligned_cols=377 Identities=15% Similarity=0.108 Sum_probs=230.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVN--PDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLN 237 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~--~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 237 (558)
..|....+.|.+.|.-.|++..++.+...+...... .-...|-.+.++|-..|++++|...|.+..+..-.--+..+-
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 356677788888888888888888888888765311 123457778888888888888888887777643222234455
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC----CHHHHHHHHHHHHHc-----------------
Q 008633 238 VVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLG----QVVEMERVLKEIVAE----------------- 296 (558)
Q Consensus 238 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~----------------- 296 (558)
.|...|.+.|+++.+...|+.+....|.+..+..+|...|...+ ..+.|..++.+..+.
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 67777888888888888888877666666777777766666554 334444444443332
Q ss_pred --------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHH
Q 008633 297 --------------------GFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEK---GCGPDT------NAYNAVISNY 347 (558)
Q Consensus 297 --------------------g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---g~~p~~------~~~~~li~~~ 347 (558)
+..+.....|.+.......|++++|...|...... ...++. .+--.+...+
T Consensus 427 ~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 427 TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 22233333344444444445555555544444332 011111 1111122233
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------------------
Q 008633 348 ISVGDFDECMKYYKGMSSYNCEPNM-DTYTRLISGLLKSRKVADALEVFEEMLDR------------------------- 401 (558)
Q Consensus 348 ~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------- 401 (558)
-..++.+.|.+.|..+.+. .|+- ..|..+....-..+...+|...+++....
T Consensus 507 E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccc
Confidence 3333334444443333322 1111 11111111111113444555554443221
Q ss_pred ----------CCCCCHHHHHHHHHHHHh------------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChh
Q 008633 402 ----------GIVPSTGTITSFLEPLCS------------YGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCG 459 (558)
Q Consensus 402 ----------~~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 459 (558)
...+|.....+|...|.. .+..+.|+++|.++.+.. +-|..+-|.+.-.++..|++.
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~ 663 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFS 663 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCch
Confidence 112344444444443332 234567888888888765 557778888888899999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 460 MLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK-GFCPSRLVYSKLSNKLLASNKLESAYNLFRKI 538 (558)
Q Consensus 460 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 538 (558)
+|..+|.+..+... -+..+|-.+.++|..+|++..|++.|+...++ ...-+..+...|.+++.+.|++.+|.+.+...
T Consensus 664 ~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 664 EARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKA 742 (1018)
T ss_pred HHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999998643 24558999999999999999999999998876 33446888999999999999999999988776
Q ss_pred HH
Q 008633 539 KI 540 (558)
Q Consensus 539 ~~ 540 (558)
..
T Consensus 743 ~~ 744 (1018)
T KOG2002|consen 743 RH 744 (1018)
T ss_pred HH
Confidence 64
No 31
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=5.3e-12 Score=113.07 Aligned_cols=302 Identities=15% Similarity=0.162 Sum_probs=210.9
Q ss_pred cCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHH
Q 008633 246 RLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDS------LTFSFLIEGLGRAGRID 319 (558)
Q Consensus 246 ~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~~~~~~g~~~ 319 (558)
..+.++|.++|-+|....+.+..+--+|.+.|.+.|..+.|+++...+.+. ||. .....|..-|...|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 455667777777776655555566667777777777777777777777654 321 22344556677778888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHH
Q 008633 320 DAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNM----DTYTRLISGLLKSRKVADALEVF 395 (558)
Q Consensus 320 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~ 395 (558)
.|+++|..+.+.|.- -......|+..|-...+|++|+++-+++.+.+-.+.. ..|--+...+....+++.|..++
T Consensus 125 RAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 888888777765422 3445667778888888888888888877765533322 23445555556667888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC
Q 008633 396 EEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPS 475 (558)
Q Consensus 396 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 475 (558)
.+..+.+. -....-..+.+.....|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+.. +
T Consensus 204 ~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~ 280 (389)
T COG2956 204 KKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--T 280 (389)
T ss_pred HHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--C
Confidence 88777531 12222234555667788888888888888887766667778888889999999999999998888753 3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhcCCchhhhhhc
Q 008633 476 DGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLL---ASNKLESAYNLFRKIKIARQNDYARRLWR 552 (558)
Q Consensus 476 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 552 (558)
+...-..+-..-....-.+.|..++.+-+.+ .|+...+..|+..-. ..|...+-...++.|....++.....-++
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~ 358 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQ 358 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceec
Confidence 4444444544444555567777777766655 599999999988764 45678888999999999888888888888
Q ss_pred ccCC
Q 008633 553 SKGW 556 (558)
Q Consensus 553 ~~gw 556 (558)
.||+
T Consensus 359 ~CGF 362 (389)
T COG2956 359 NCGF 362 (389)
T ss_pred ccCC
Confidence 8885
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=1.6e-11 Score=122.18 Aligned_cols=291 Identities=11% Similarity=0.091 Sum_probs=153.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHhHHH
Q 008633 176 RKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESL--NVVLWCLCQRLHVGAAS 253 (558)
Q Consensus 176 ~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~--~~ll~~~~~~~~~~~A~ 253 (558)
.|+++.|.+.+....+.+-. ....|.....+..+.|+++.|.+.+.++.+. .|+.... ......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 35555555555544332111 1122222233335555566666665555543 2222211 12234455555555555
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008633 254 SLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGC 333 (558)
Q Consensus 254 ~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 333 (558)
..++++.+..|-+......+...|.+.|++++|.+++..+.+.+..++. .+..+-
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------ 228 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------ 228 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH------------------------
Confidence 5555555544545555555555555555555555555555554332111 111000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008633 334 GPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSF 413 (558)
Q Consensus 334 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 413 (558)
..+|..++.......+.+...++++.+.+. .+.+......+..++...|+.++|.+++++..+. .++.... +
T Consensus 229 ---~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~ 300 (398)
T PRK10747 229 ---QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--L 300 (398)
T ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--H
Confidence 012223333333334455555555555432 1345556666666677777777777777666653 3344221 2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008633 414 LEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQL 493 (558)
Q Consensus 414 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 493 (558)
+.+.+..++.+++.+..+...+.. +-|...+..+...+.+.+++++|.+.|+...+. .|+...|..+...+.+.|+.
T Consensus 301 l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 301 LIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKP 377 (398)
T ss_pred HHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCH
Confidence 223334466667777666666543 345556666677777777777777777777764 56777777777777777777
Q ss_pred hHHHHHHHHHHh
Q 008633 494 ENAVLVMEESLR 505 (558)
Q Consensus 494 ~~A~~~~~~m~~ 505 (558)
++|..++++...
T Consensus 378 ~~A~~~~~~~l~ 389 (398)
T PRK10747 378 EEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHh
Confidence 777777776653
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.59 E-value=2.9e-11 Score=122.41 Aligned_cols=332 Identities=13% Similarity=0.079 Sum_probs=261.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCC
Q 008633 203 IVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQ 282 (558)
Q Consensus 203 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~ 282 (558)
...+.....|+.++|.+++.++++.. +.....|-+|...|-..|+.+++...+-....-.|-|...|..+.....+.|+
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc
Confidence 33344444599999999999999875 44778999999999999999999988776666677788999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHHHHHH
Q 008633 283 VVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAY----NAVISNYISVGDFDECMK 358 (558)
Q Consensus 283 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~~~~A~~ 358 (558)
+++|.-.|.+..+.. +++...+---+..|-+.|+...|..-|.++.....+.|..-+ -..++.+...++-+.|.+
T Consensus 223 i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999874 345555556677888999999999999999888553333322 234566777888899999
Q ss_pred HHHHhhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------------------CCCCCHHHH
Q 008633 359 YYKGMSSYN-CEPNMDTYTRLISGLLKSRKVADALEVFEEMLDR---------------------------GIVPSTGTI 410 (558)
Q Consensus 359 ~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------------------~~~p~~~~~ 410 (558)
.++.....+ -..+...++.++..|.+...++.|......+... ++.++...+
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 999887622 2455667889999999999999999988888761 122222221
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008633 411 TSFLEPLCSYGPPHAAMMMYKKARKVG--CKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLC 488 (558)
Q Consensus 411 ~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 488 (558)
.. .-++......+....+.....+.+ ..-+...|.-+..+|...|++.+|+.++..+.....--+...|..+..+|.
T Consensus 382 rl-~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 382 RL-MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred hH-hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 22 223445555566666666666665 344577899999999999999999999999998765667789999999999
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 489 NIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
..|.+++|++.++..+.. .|+ ...-.+|...+.+.|++++|.+.++.|.
T Consensus 461 ~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999999999965 454 5677788888999999999999999876
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=1.5e-11 Score=122.96 Aligned_cols=301 Identities=12% Similarity=0.059 Sum_probs=149.6
Q ss_pred HHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008633 166 YNVIVKALG--RRKFFDFMCNVLSDMAKEGVNPD-LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWC 242 (558)
Q Consensus 166 ~~~li~~~~--~~~~~~~a~~l~~~m~~~g~~~~-~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 242 (558)
+..+.+++. ..|+++.|.+.+.+..+.. |+ ...+-....+..+.|+.+.|.+.+.+..+....+...+.-.....
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 344444442 4566666666666555442 33 233334455555666666666666666543222222233334555
Q ss_pred HHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---HhcCCH
Q 008633 243 LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFS-FLIEGL---GRAGRI 318 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~---~~~g~~ 318 (558)
+...|+++.|.+.++.+.+..|-+...+..+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666665555555566666666666666666666666666665432 221111 001110 111111
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 319 DDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEM 398 (558)
Q Consensus 319 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (558)
+++.+.+..+ ++...+. .+.+...+..+...+...|+.++|.+++++.
T Consensus 242 ~~~~~~L~~~-------------------------------~~~~p~~-~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~ 289 (409)
T TIGR00540 242 DEGIDGLLNW-------------------------------WKNQPRH-RRHNIALKIALAEHLIDCDDHDSAQEIIFDG 289 (409)
T ss_pred hcCHHHHHHH-------------------------------HHHCCHH-HhCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 1111122222 2221110 0124455555555555555555555555555
Q ss_pred HHCCCCCCHHH--H-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHcCCChhHHHHHHHHHHHCCC
Q 008633 399 LDRGIVPSTGT--I-TSFLEPLCSYGPPHAAMMMYKKARKVGCKLSL--TAYKLLLRRLSGFGKCGMLLDLWHEMQESGY 473 (558)
Q Consensus 399 ~~~~~~p~~~~--~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 473 (558)
.+.. |+... + ....-.....++.+.+.+.++...+.. +-+. ....++...+.+.|++++|.+.|+.......
T Consensus 290 l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~ 366 (409)
T TIGR00540 290 LKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE 366 (409)
T ss_pred HhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc
Confidence 5542 22221 0 111111222345555666665555432 2233 4455666666777777777777774333333
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008633 474 PSDGEIYEYVIAGLCNIGQLENAVLVMEESL 504 (558)
Q Consensus 474 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (558)
.|+...+..+...+.+.|+.++|.+++++..
T Consensus 367 ~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 367 QLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666666677777777777777777777654
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=1.1e-14 Score=138.25 Aligned_cols=261 Identities=18% Similarity=0.211 Sum_probs=101.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008633 272 IVISGWSKLGQVVEMERVLKEIVAEGFSPDS-LTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISV 350 (558)
Q Consensus 272 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 350 (558)
.+...+.+.|++++|++++++.......|+. .-|..+...+...++.+.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4466666777777777777554433212333 33334444555667777777777777766544 45566666666 677
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 008633 351 GDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRG-IVPSTGTITSFLEPLCSYGPPHAAMMM 429 (558)
Q Consensus 351 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~ 429 (558)
+++++|.+++....+. .++...+..++..+...++++++.++++++.... ...+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7888888877766554 3455666777777788888888888888776532 234556667777777788888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 008633 430 YKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFC 509 (558)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 509 (558)
++++.+.. +-+......++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|+.++++..+.. +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 88887764 3356777778888888888888888887776543 4556678888888889999999999999888753 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 510 PSRLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 510 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
.|+.+...+.+++...|+.++|.++..+..
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 468888888899999999999988887654
No 36
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.59 E-value=9.4e-11 Score=119.57 Aligned_cols=407 Identities=13% Similarity=0.062 Sum_probs=278.0
Q ss_pred CCCchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHhCCHHH
Q 008633 139 GNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKE--GVNPDLETLSIVMDSFIRAGQVYK 216 (558)
Q Consensus 139 ~~~~~~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~--g~~~~~~t~~~li~~~~~~g~~~~ 216 (558)
+..+-+.|..-|.++.++. ++|+-..--=....-..+++..|+.+|...... ...||+.. .+...+.+.|+.+.
T Consensus 142 ~~~~~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~ 217 (1018)
T KOG2002|consen 142 GDKSMDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEK 217 (1018)
T ss_pred CCccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhh
Confidence 3333356666777777764 355444333333345678999999999997654 34555432 23356678999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 217 AIQMLGRLEDFGLKFDAESLNVVLWCLCQR---LHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEI 293 (558)
Q Consensus 217 A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~---~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 293 (558)
|+..|.+..+.+. -++.++..|...-... ..+..+..++...-...+-|++..+.|...|.-.|++..++.+...+
T Consensus 218 a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~a 296 (1018)
T KOG2002|consen 218 ALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHA 296 (1018)
T ss_pred HHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 9999999998643 2333333333322222 34566777777665556668899999999999999999999999998
Q ss_pred HHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 008633 294 VAEGFS--PDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPN 371 (558)
Q Consensus 294 ~~~g~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 371 (558)
...... .-...|-.+.++|-..|++++|...|.+..+....--+..+-.|..+|.+.|+++.+...|+.+.+.. +-+
T Consensus 297 i~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~ 375 (1018)
T KOG2002|consen 297 IKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNN 375 (1018)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cch
Confidence 875311 12345778999999999999999999887766433224455678899999999999999999998763 445
Q ss_pred HHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH----HcCCCCCHH
Q 008633 372 MDTYTRLISGLLKSR----KVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKAR----KVGCKLSLT 443 (558)
Q Consensus 372 ~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ 443 (558)
..+...|...|...+ ..+.|..++.+..+.- +.|...|-.+...+. .++...++..|..+. ..+..+.+.
T Consensus 376 ~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E 453 (1018)
T KOG2002|consen 376 YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPE 453 (1018)
T ss_pred HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 566667777776664 5677777777776653 445566666655444 455555577776554 345568889
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HH
Q 008633 444 AYKLLLRRLSGFGKCGMLLDLWHEMQES---GYPSDG------EIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RL 513 (558)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 513 (558)
..|.+.......|.+++|...|+..... ...+|. .+-..+...+-..++.+.|.+.|+..++. .|. ..
T Consensus 454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId 531 (1018)
T KOG2002|consen 454 VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYID 531 (1018)
T ss_pred HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHH
Confidence 9999999999999999999999887654 122232 12233445556678899999999998876 466 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchhhhhhcccC-CC
Q 008633 514 VYSKLSNKLLASNKLESAYNLFRKIKIARQNDYARRLWRSKG-WH 557 (558)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~g-w~ 557 (558)
.|..++......+...+|...++.... +.......|.-.| ||
T Consensus 532 ~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 532 AYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLH 574 (1018)
T ss_pred HHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHH
Confidence 565665444456788888888888764 3333334444444 44
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.56 E-value=2.4e-14 Score=135.99 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHH
Q 008633 170 VKALGRRKFFDFMCNVL 186 (558)
Q Consensus 170 i~~~~~~~~~~~a~~l~ 186 (558)
...+.+.|++++|++++
T Consensus 15 A~~~~~~~~~~~Al~~L 31 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVL 31 (280)
T ss_dssp -----------------
T ss_pred ccccccccccccccccc
Confidence 33333444444444444
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.7e-10 Score=108.47 Aligned_cols=362 Identities=10% Similarity=0.042 Sum_probs=242.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHH--H
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESL--N 237 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~--~ 237 (558)
..|...+-...-++.+.|....|.+.|...... .+-.-.+|..|...+. +.+ +...... |...|.... -
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit---~~e----~~~~l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELIT---DIE----ILSILVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhc---hHH----HHHHHHh-cCcccchHHHHH
Confidence 344444444444455556666666666555543 2233344444433331 111 1111111 112111111 1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHh
Q 008633 238 VVLWCLCQRLHVGAASSLFNSMKGK-VLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFS--PDSLTFSFLIEGLGR 314 (558)
Q Consensus 238 ~ll~~~~~~~~~~~A~~~~~~m~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~ 314 (558)
.+..++-...+.+++.+-.+...+. .+.+...-+....+.-...++++|+.+|+++.+...- -|..+|+.++-.--.
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 2334455555666776666666554 4434444444455556677888888888888876311 256677766644322
Q ss_pred cCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 315 AGRIDD-AIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALE 393 (558)
Q Consensus 315 ~g~~~~-a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 393 (558)
..++.- |..+++ -... -+.|+.++.+-|.-.++.++|..+|++..+.+ +.....|+.|..-|....+...|++
T Consensus 312 ~skLs~LA~~v~~---idKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 312 KSKLSYLAQNVSN---IDKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hHHHHHHHHHHHH---hccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHH
Confidence 222111 222211 1112 34577788889999999999999999999876 5567889999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCC
Q 008633 394 VFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGY 473 (558)
Q Consensus 394 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 473 (558)
-++..++-+ +-|-..|-.+.++|...+...-|+-.|+++.+.. +.|...|.+|..+|.+.++.++|++.|+.....|
T Consensus 386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~- 462 (559)
T KOG1155|consen 386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG- 462 (559)
T ss_pred HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence 999999864 5677889999999999999999999999998854 5688999999999999999999999999999876
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 474 PSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK----GFCPS--RLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 474 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
..+...+..+...|-+.++.++|...+++.++. |...+ .....-|..-+.+.+++++|.....+..
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 346689999999999999999999999988762 33222 2233336666788899988887665554
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=6.2e-11 Score=110.73 Aligned_cols=374 Identities=13% Similarity=0.114 Sum_probs=210.7
Q ss_pred HHHHHHHHHHhcCC-CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 008633 144 EAMVLFFNWAIKHP-NVAKD--VKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQM 220 (558)
Q Consensus 144 ~~~~~ff~~~~~~~-~~~~~--~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~ 220 (558)
..|..|++.+..+- .+..+ ....|.+.-.+.+.|+++.|+.-|+...+. .|+..+-..|+-.+...|+.++..+.
T Consensus 254 skaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkea 331 (840)
T KOG2003|consen 254 SKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEA 331 (840)
T ss_pred HHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHH
Confidence 35667777666431 11111 122344444456778888888888777665 46666544455555556777777777
Q ss_pred HHHHHhCCCCCC------------HHHHHHHH-----HHHHhcCCHhHHHHHHH---HhhcC-CCCChhh---H------
Q 008633 221 LGRLEDFGLKFD------------AESLNVVL-----WCLCQRLHVGAASSLFN---SMKGK-VLFNVMT---Y------ 270 (558)
Q Consensus 221 ~~~~~~~g~~~~------------~~~~~~ll-----~~~~~~~~~~~A~~~~~---~m~~~-~~~~~~~---~------ 270 (558)
|.+|......+| ....+--| .-.-+... ..|.+..- ++... +.|+... |
T Consensus 332 f~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~k-a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk 410 (840)
T KOG2003|consen 332 FQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENK-ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLK 410 (840)
T ss_pred HHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhh-hhHHHHHHHHHHHhccccccchhcccHHHHHHHH
Confidence 777765433222 22222211 11111111 11111111 11110 1111110 0
Q ss_pred ------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHH-------------------------
Q 008633 271 ------------NIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFL--IEG------------------------- 311 (558)
Q Consensus 271 ------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--l~~------------------------- 311 (558)
-.-...+.+.|+++.|+++++-+.+..-+.-...-+.| +..
T Consensus 411 ~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~ 490 (840)
T KOG2003|consen 411 ASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA 490 (840)
T ss_pred HhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH
Confidence 01123466788888888887766654322111111111 110
Q ss_pred ---------HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 008633 312 ---------LGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGL 382 (558)
Q Consensus 312 ---------~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 382 (558)
....|++++|.+.+.+.....-.-....|| +.-.+-..|++++|++.|-++..- +.-++.+.-.+...|
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiy 568 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIY 568 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence 012466777777777766552221122222 223355667777777777665432 123555566666777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHH
Q 008633 383 LKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLL 462 (558)
Q Consensus 383 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 462 (558)
-...+...|++++.+.... ++.|......|...|-+.|+..+|.+.+-.--+. ++-+..+...|...|....-+++++
T Consensus 569 e~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai 646 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAI 646 (840)
T ss_pred HHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHH
Confidence 7777777777777665443 3445666777777777778877777766544332 3556777777777777777788888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 463 DLWHEMQESGYPSDGEIYEYVIAGL-CNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNK 527 (558)
Q Consensus 463 ~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 527 (558)
.+|++..- +.|+..-|..||..| .+.|++..|..+++...++ ++-|.....-|++.+...|.
T Consensus 647 ~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 647 NYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 88877654 377888888777644 4668888888888877664 56667777777777777665
No 40
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=8e-11 Score=105.66 Aligned_cols=289 Identities=14% Similarity=0.079 Sum_probs=188.5
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHhH
Q 008633 175 RRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFD---AESLNVVLWCLCQRLHVGA 251 (558)
Q Consensus 175 ~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~ll~~~~~~~~~~~ 251 (558)
-.++.++|+++|-+|.+.. +-+.++..+|.+.|-+.|..+.|+.+++.+.+..--+. ....-.|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3578899999999998853 33556777888999999999999999999886421111 2334456666788888888
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 252 ASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDS----LTFSFLIEGLGRAGRIDDAIEVFDT 327 (558)
Q Consensus 252 A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~ 327 (558)
|+.+|..+......-......|+..|-+..+|++|+++-+++.+.|-++.. .-|.-+...+....+.+.|..++.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 888888887643334556777888888888888888888888876544432 2244455555556777888888887
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 008633 328 MKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPST 407 (558)
Q Consensus 328 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 407 (558)
..+.+.. ++..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|...|+.++....+..+.+....++.
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 7766443 444555667777788888888888888877653333455667777888888888888888777765433333
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC---CChhHHHHHHHHHH
Q 008633 408 GTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGF---GKCGMLLDLWHEMQ 469 (558)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~ 469 (558)
. ..+-+......-.+.|...+.+-... +|+...+..+|..-... |...+-+.+++.|.
T Consensus 285 ~--l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 285 E--LMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred H--HHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 2 22222222333334444444433332 46666666666654332 33444455555554
No 41
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.53 E-value=1.8e-10 Score=106.63 Aligned_cols=289 Identities=13% Similarity=0.062 Sum_probs=140.6
Q ss_pred CCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 247 LHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFD 326 (558)
Q Consensus 247 ~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 326 (558)
|++..|+++..+-.+..+.....|..-+.+--..|+.+.+..++.+..+.--.++...+-+..+.....|+.+.|..-++
T Consensus 98 G~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~ 177 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD 177 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 44444444444433333333334444444444445555555555544443222333344444444444555555555444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 327 TMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNM-------DTYTRLISGLLKSRKVADALEVFEEML 399 (558)
Q Consensus 327 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (558)
++.+.+.. +.........+|.+.|++.....++.+|.+.|.-.+. .+|..+++-....+..+.-...+++.-
T Consensus 178 ~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 178 QLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 44444333 3344444455555555555555555555544433222 223333333333333333333333332
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH-CCCCCCHH
Q 008633 400 DRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQE-SGYPSDGE 478 (558)
Q Consensus 400 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~ 478 (558)
.+ .+-+...-.+++.-+...|+.++|.++.++..+.+..+.... .-.+.+-++...-++..+.-.. .+ .++.
T Consensus 257 r~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~--~~p~ 329 (400)
T COG3071 257 RK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHP--EDPL 329 (400)
T ss_pred HH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhCC--CChh
Confidence 22 222333334444445555555555555555555444333111 1123344444444444443332 32 2335
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc
Q 008633 479 IYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQND 545 (558)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 545 (558)
.+.+|...|.+.+.+.+|...|+..++. .|+..+|..+..++.+.|+.++|.+..++....-..|
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 6677777777777777777777766654 5777777777777777777777777777665444433
No 42
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=8.3e-11 Score=109.92 Aligned_cols=217 Identities=12% Similarity=0.160 Sum_probs=163.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 279 KLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMK 358 (558)
Q Consensus 279 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 358 (558)
.+|++++|.+.|++.....-.-....||+= -.+-..|++++|++.|-++...-.. ++.+...+.+.|....+...|++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~il~n-n~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAILLN-NAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhhCHHHHHH
Confidence 368899999999998876433333334432 3456789999999998776543222 66777788899999999999999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 008633 359 YYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGC 438 (558)
Q Consensus 359 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 438 (558)
++.+.... ++.|.....-|...|-+.|+-..|.+.+.+-.+. ++.+..+...|...|....-+++++.+|++..- +
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--i 655 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I 655 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence 99877653 4567788888999999999999999988776554 456778888888888888888999999987755 4
Q ss_pred CCCHHHHHHHHHHH-HcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 008633 439 KLSLTAYKLLLRRL-SGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEES 503 (558)
Q Consensus 439 ~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 503 (558)
.|+..-|..++..| .+.|++++|.++|+.+... ++.|..+...|++.+...|- .+|.++-+++
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~~kl 719 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYADKL 719 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHHHHH
Confidence 68999998877654 5579999999999998764 57788888888888877763 3344444433
No 43
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=6.9e-10 Score=102.85 Aligned_cols=303 Identities=14% Similarity=0.114 Sum_probs=189.6
Q ss_pred HHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008633 167 NVIVKALGR--RKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLC 244 (558)
Q Consensus 167 ~~li~~~~~--~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~ 244 (558)
..+.+++.+ .|+|.+|.++..+-.+.+-. ....|..-+.+.-..|+.+.+-.++.++.+..-.++...+-+......
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 344445433 57888888888777666533 345566666777777888888888887777544556666777777777
Q ss_pred hcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008633 245 QRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEV 324 (558)
Q Consensus 245 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 324 (558)
..|+.+.|..-.++..+..|-+........++|.+.|++.+...++..|.+.|.--+... ..+
T Consensus 165 ~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~l 227 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARL 227 (400)
T ss_pred hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHH
Confidence 777777777777777666666777777777788888888888777777777765433211 000
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 008633 325 FDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIV 404 (558)
Q Consensus 325 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 404 (558)
...+|+.+++-....+..+.-...++.....- +-+...-.+++.-+.+.|+.++|.++.++..+.+..
T Consensus 228 -----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l-r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D 295 (400)
T COG3071 228 -----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL-RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD 295 (400)
T ss_pred -----------HHHHHHHHHHHHhccccchHHHHHHHhccHHh-hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 11244555554444444444444555544321 233444455666666667777777777666666554
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008633 405 PSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVI 484 (558)
Q Consensus 405 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 484 (558)
|.. ..++ .+.+.++.+.-++..+.-.+.. +-++..+..|...|.+.+.+.+|...|+...+. .|+..+|+.+.
T Consensus 296 ~~L---~~~~-~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la 368 (400)
T COG3071 296 PRL---CRLI-PRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELA 368 (400)
T ss_pred hhH---HHHH-hhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHH
Confidence 441 1222 3445566666555555544422 233466666777777777777777777765544 56777777777
Q ss_pred HHHHhcCCHhHHHHHHHHHHhC
Q 008633 485 AGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
+++.+.|+..+|....++....
T Consensus 369 ~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 369 DALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHcCChHHHHHHHHHHHHH
Confidence 7777777777777777776543
No 44
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.51 E-value=4.2e-09 Score=103.19 Aligned_cols=305 Identities=12% Similarity=0.056 Sum_probs=166.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 008633 157 PNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDM----AKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFD 232 (558)
Q Consensus 157 ~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m----~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~ 232 (558)
..++.+...|-+-...=-.+|+.+....++++- ...|+..+...|..=...|-..|..-.+..+.......|++-.
T Consensus 434 e~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee 513 (913)
T KOG0495|consen 434 EIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE 513 (913)
T ss_pred hhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc
Confidence 345666777776666666778877777776654 4457777777777777777777777777777766666665432
Q ss_pred --HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008633 233 --AESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIE 310 (558)
Q Consensus 233 --~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 310 (558)
..+|+.-...|.+.+.++-|..+|.....-.|-+...|...+..=-..|..++...+|.+.... ++-....|.....
T Consensus 514 d~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ak 592 (913)
T KOG0495|consen 514 DRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAK 592 (913)
T ss_pred hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHH
Confidence 2455556666666666666666666555555555555555555555555555555555555543 1223333444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 311 GLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVAD 390 (558)
Q Consensus 311 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 390 (558)
.+-..|+...|..++....+.... +...|-.-+..-....+++.|..+|.+.... .|+...|.--+...--.++.++
T Consensus 593 e~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHH
Confidence 444555555555555555554333 4445555555555555555555555555443 3444444443333334445555
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHh----------------------------------cCChhHHHHHHHHHHH
Q 008633 391 ALEVFEEMLDRGIVPS-TGTITSFLEPLCS----------------------------------YGPPHAAMMMYKKARK 435 (558)
Q Consensus 391 A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~----------------------------------~g~~~~a~~~~~~~~~ 435 (558)
|.+++++..+. .|+ ...|..+.+.+-+ .|.+-.|..++++..-
T Consensus 670 A~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 670 ALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 55555444442 222 1223333333333 4445555555555444
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 008633 436 VGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEM 468 (558)
Q Consensus 436 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 468 (558)
.+ +-+...|-..|++-.+.|+.+.|..+..+.
T Consensus 748 kN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 748 KN-PKNALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred cC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33 334455555555555556655555544443
No 45
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.50 E-value=2e-09 Score=105.33 Aligned_cols=337 Identities=9% Similarity=-0.013 Sum_probs=243.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 008633 199 ETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWS 278 (558)
Q Consensus 199 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~ 278 (558)
..|......=-..|..+....+++++...- +-....|-.....+-..|++..|..++.+.-+..|.+...|-.-+..-.
T Consensus 551 slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~ 629 (913)
T KOG0495|consen 551 SLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEF 629 (913)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhh
Confidence 334433333334455555555555555432 2233344444555556677777777777776666667777777777778
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 279 KLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMK 358 (558)
Q Consensus 279 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 358 (558)
.+.+++.|..+|.+.... .|+...|..-++..--.+..++|.+++++..+. ++.-...|-.+...+-+.++++.|.+
T Consensus 630 en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~ 706 (913)
T KOG0495|consen 630 ENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMARE 706 (913)
T ss_pred ccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHH
Confidence 888888888888777654 466666666666666677888888888777765 23234567777778888888888888
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 008633 359 YYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGC 438 (558)
Q Consensus 359 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 438 (558)
.|..-.+. |+-.+-.|-.|...--+.|.+-.|..+++...-++ +-+...|-..|+.-.+.|..+.|..+..++.+. +
T Consensus 707 aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-c 783 (913)
T KOG0495|consen 707 AYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-C 783 (913)
T ss_pred HHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-C
Confidence 87765543 34455667777777778889999999999988775 456788899999999999999999999888774 5
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHH
Q 008633 439 KLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSK 517 (558)
Q Consensus 439 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ 517 (558)
+.+...|..-|....+.++-....+.+++- .-|.+..-.+...+....+++.|.+.|.+.++.+ || -.+|.-
T Consensus 784 p~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~wa~ 856 (913)
T KOG0495|consen 784 PSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAWAW 856 (913)
T ss_pred CccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchHHHH
Confidence 667778888887777777755554444432 4577888888889999999999999999999764 55 578888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCchhhhhh
Q 008633 518 LSNKLLASNKLESAYNLFRKIKIARQNDYARRLW 551 (558)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 551 (558)
+...+.+.|.-+.-.+++.+.. ...|.-+..|
T Consensus 857 fykfel~hG~eed~kev~~~c~--~~EP~hG~~W 888 (913)
T KOG0495|consen 857 FYKFELRHGTEEDQKEVLKKCE--TAEPTHGELW 888 (913)
T ss_pred HHHHHHHhCCHHHHHHHHHHHh--ccCCCCCcHH
Confidence 8899999999999999999887 3455556666
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=8.5e-12 Score=122.38 Aligned_cols=282 Identities=13% Similarity=0.070 Sum_probs=177.2
Q ss_pred CHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008633 248 HVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEG--FSPDSLTFSFLIEGLGRAGRIDDAIEVF 325 (558)
Q Consensus 248 ~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 325 (558)
+..+|...|+.+...+.-.......+..+|...+++++|.++|+...+.. ..-+..+|.+.+--+-+.-. --.+-
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~---Ls~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVA---LSYLA 410 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHH---HHHHH
Confidence 34667777777655555455555667777777777777777777776642 11245566666544332111 11112
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 008633 326 DTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVP 405 (558)
Q Consensus 326 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 405 (558)
+.+.+.. +-.+.+|.++.++|.-+++.+.|++.|++..+.+ +-...+|+.+..-+.....+|.|...|+..+.. .|
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~ 486 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DP 486 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cc
Confidence 2222222 2255677777777777777777777777777653 225667777777777777777777777766542 22
Q ss_pred C-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008633 406 S-TGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVI 484 (558)
Q Consensus 406 ~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 484 (558)
. -..|-.+...|.++++++.|+-.|+++.+.+ +-+.+....+...+.+.|+.++|++++++....+ +-|+..--..+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHH
Confidence 2 2233445556777777777777777777655 3445555666666777777777777777777654 23444444455
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 485 AGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
..+...+++++|+..++++.+. .|+ ..++..++..|.+.|+.+.|..-|.-+.+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 5666777777777777777754 444 56677777777777777777777766654
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.7e-09 Score=101.86 Aligned_cols=312 Identities=14% Similarity=0.098 Sum_probs=237.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCC---CChhhHHHHHHHHHhc
Q 008633 204 VMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVL---FNVMTYNIVISGWSKL 280 (558)
Q Consensus 204 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~---~~~~~~~~li~~~~~~ 280 (558)
+..++-.....+++.+-.+.....|++.+...-+....+.-...+++.|+.+|+++....| .|..+|..++..--..
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 4456667778899999999999999887777777777778888999999999999987633 2677888777654332
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008633 281 GQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYY 360 (558)
Q Consensus 281 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 360 (558)
.+ +.++.+-.-.--+--..|..++.+-|.-.++.++|...|+...+.+.. ....|+.+.+-|....+...|.+-+
T Consensus 313 sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 313 SK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHH
Confidence 22 222222221111223457778888999999999999999999998655 6678999999999999999999999
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 008633 361 KGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKL 440 (558)
Q Consensus 361 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 440 (558)
+...+-+ +.|-..|-.|.++|.-.+...-|+-.|++...-. +-|...+.+|.++|.+.++.++|++.|.+....| ..
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 9999875 7788999999999999999999999999988853 4567899999999999999999999999999876 33
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHH
Q 008633 441 SLTAYKLLLRRLSGFGKCGMLLDLWHEMQE----SGYPSD--GEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLV 514 (558)
Q Consensus 441 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 514 (558)
+...|..|.+.|-+.++.++|...|..-.+ .|...+ .....-|..-+.+.+++++|..+.......
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~-------- 536 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG-------- 536 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--------
Confidence 668899999999999999999988876654 332222 112222445566777777776655544321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 515 YSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
....++|..+++++.+.
T Consensus 537 ----------~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 537 ----------ETECEEAKALLREIRKI 553 (559)
T ss_pred ----------CchHHHHHHHHHHHHHh
Confidence 23346677777766643
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=4.5e-11 Score=117.43 Aligned_cols=284 Identities=14% Similarity=0.126 Sum_probs=175.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCC---CChhhHHHHHHHHHhcCCHHHHHHH
Q 008633 213 QVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVL---FNVMTYNIVISGWSKLGQVVEMERV 289 (558)
Q Consensus 213 ~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 289 (558)
+..+|+..|+.+... +.-+..+...+..+|...+++++|+++|+.+....| -+...|.+.+--+-+. -++.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 456666666664433 222335566666777777777777777776654311 2555666665544221 11222
Q ss_pred H-HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 008633 290 L-KEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNC 368 (558)
Q Consensus 290 ~-~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 368 (558)
+ +++.+. -+-...+|.++.++|.-.++.+.|++.|++.++.... ...+|+.+.+-+....++|+|...|+......
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 2 122221 1234567777777777777777777777777666332 56677777777777777777777777776321
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 008633 369 EPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLL 448 (558)
Q Consensus 369 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 448 (558)
+.+-..|--+...|.+.++++.|+-.|+...+-+ +-+.+....+...+.+.|+.++|+++++++...+.+ |+..--..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 1122333445666777777777777777776643 233445555566666777778888888777765533 22222233
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 008633 449 LRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKG 507 (558)
Q Consensus 449 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 507 (558)
+..+...++.++|+..++++++. ++-+...|..+...|.+.|+.+.|+.-|--|.+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 44566678888888888888875 24455577777788888888888888888777553
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=3.4e-08 Score=93.45 Aligned_cols=372 Identities=14% Similarity=0.099 Sum_probs=246.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLE-TLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVV 239 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~-t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 239 (558)
.+...|-..+..=.+++++..|..+++..... -|-+. .|-.-+-.=-..|++..|.++|++-.+ ..|+...|++.
T Consensus 105 r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sf 180 (677)
T KOG1915|consen 105 RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSF 180 (677)
T ss_pred ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHH
Confidence 45556666667777777777777777777664 23322 222233333345777777777777665 46777777777
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHHhcCC
Q 008633 240 LWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE-GF-SPDSLTFSFLIEGLGRAGR 317 (558)
Q Consensus 240 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~-~p~~~t~~~ll~~~~~~g~ 317 (558)
|+.=.+.+.++.|..++++..- +.|++.+|--....=.+.|+...|..+|+...+. |- ..+...+.++..--.+...
T Consensus 181 I~fElRykeieraR~IYerfV~-~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE 259 (677)
T KOG1915|consen 181 IKFELRYKEIERARSIYERFVL-VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKE 259 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhe-ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777654 3367777777777777777777777777766543 10 0112223333332233334
Q ss_pred HHHHHHHHHHHHHC------------------------C-------------------CCCCHHHHHHHHHHHHhcCCHH
Q 008633 318 IDDAIEVFDTMKEK------------------------G-------------------CGPDTNAYNAVISNYISVGDFD 354 (558)
Q Consensus 318 ~~~a~~~~~~m~~~------------------------g-------------------~~p~~~~~~~li~~~~~~g~~~ 354 (558)
++.|.-+|.-.+.. | -+.|-.+|--.++.-...|+.+
T Consensus 260 ~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~ 339 (677)
T KOG1915|consen 260 YERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKD 339 (677)
T ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHH
Confidence 44444444332221 0 1224456666667777778888
Q ss_pred HHHHHHHHhhhCCCCCCH-------HHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hc
Q 008633 355 ECMKYYKGMSSYNCEPNM-------DTYTRLISGL---LKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLC----SY 420 (558)
Q Consensus 355 ~A~~~~~~m~~~~~~p~~-------~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~ 420 (558)
...++|++.+.. ++|-. ..|..+--++ ....+++.+.++++..++. ++....||.-+--.|+ ++
T Consensus 340 ~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq 417 (677)
T KOG1915|consen 340 RIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQ 417 (677)
T ss_pred HHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHH
Confidence 888888888754 34422 1222222222 2467888888888888873 4444556654433333 46
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 008633 421 GPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVM 500 (558)
Q Consensus 421 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 500 (558)
.++..|.+++..++ |..|...++...|..-.+.++++.+..+++...+.+ +-|..+|......=...|+.+.|..+|
T Consensus 418 ~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 418 LNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIF 494 (677)
T ss_pred cccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 77888888887665 556888889999998899999999999999999876 557888888888888899999999999
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 008633 501 EESLRKG-FCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIAR 542 (558)
Q Consensus 501 ~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 542 (558)
+-++... +.-....|.+.++-=...|.++.|..+++++.+..
T Consensus 495 elAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 495 ELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 9988762 22225677777777788999999999999987643
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=4e-09 Score=100.02 Aligned_cols=219 Identities=15% Similarity=0.151 Sum_probs=169.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 314 RAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALE 393 (558)
Q Consensus 314 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 393 (558)
-.|+.-.|.+-|+..++....++ ..|--+..+|....+.++..+.|++..+.+ +-|..+|..-.+.+.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 45788889999999988865533 337778888999999999999999998875 5567778888888888899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC-
Q 008633 394 VFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESG- 472 (558)
Q Consensus 394 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~- 472 (558)
=|++.+... +-+...|..+.-+..+.+.+++++..|++.++. ++..+..|+.....+...++++.|.+.|+..++..
T Consensus 416 DF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 416 DFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 999988753 223445555555566788999999999998874 46678899999999999999999999999887642
Q ss_pred ----CCCCHHHH--HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 473 ----YPSDGEIY--EYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 473 ----~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
+..+...+ -.++. +.-.+++..|.+++.++++.+ |. ...|..|...-.+.|+.++|+++|++-.
T Consensus 494 ~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11122211 12222 223489999999999999764 44 5789999999999999999999998754
No 51
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=2.6e-08 Score=94.15 Aligned_cols=388 Identities=11% Similarity=0.085 Sum_probs=282.7
Q ss_pred CCCchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHH
Q 008633 139 GNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAI 218 (558)
Q Consensus 139 ~~~~~~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~ 218 (558)
.++..-+...|.+|+. ..|+..+|++.|+.=.+-+.++.|..+++..+- +.|++.+|..-.+-=.+.|.+..|.
T Consensus 154 LgNi~gaRqiferW~~----w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 154 LGNIAGARQIFERWME----WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred hcccHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHH
Confidence 3344457888999985 568999999999999999999999999999976 4699999999998888999999999
Q ss_pred HHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHH-----
Q 008633 219 QMLGRLEDF-GLK-FDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFN--VMTYNIVISGWSKLGQVVEMERV----- 289 (558)
Q Consensus 219 ~~~~~~~~~-g~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~----- 289 (558)
.+|+.+.+. |-. .+...+++....=.++..++.|.-+|.-.....|.+ ...|......=-+.|+.....+.
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 999998753 211 112234444444445678889999998877766655 45566666555556665544432
Q ss_pred ---HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHH--------HHHHHHhcCCHHHHH
Q 008633 290 ---LKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTN-AYNA--------VISNYISVGDFDECM 357 (558)
Q Consensus 290 ---~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~--------li~~~~~~g~~~~A~ 357 (558)
++.+++.+ +-|-.+|--.++.....|+.+...++|+..+..-.+.... .|.- .+-.=....+.+.+.
T Consensus 308 k~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44455443 4577788888888888899999999999998773332211 1211 111223577899999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008633 358 KYYKGMSSYNCEPNMDTYTRLISG----LLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKA 433 (558)
Q Consensus 358 ~~~~~m~~~~~~p~~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 433 (558)
++|+...+. ++-...|+.-+=-. ..+..++..|.+++...+ |..|...+|...|..-.+.++++.+..+|++.
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999998873 34445555544333 346788999999988765 45789999999999889999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 008633 434 RKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESG-YPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSR 512 (558)
Q Consensus 434 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 512 (558)
.+.+ +-+..+|......-...|+.+.|..+|.-..+.. +.--...|-+.|+.=...|.++.|..+++++++. .+..
T Consensus 464 le~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~ 540 (677)
T KOG1915|consen 464 LEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHV 540 (677)
T ss_pred HhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccc
Confidence 9976 4567788888777788899999999999888643 2223447888888888899999999999999976 3444
Q ss_pred HHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHH
Q 008633 513 LVYSKLSNKLL-----ASN-----------KLESAYNLFRKIK 539 (558)
Q Consensus 513 ~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~ 539 (558)
.+|.....--. +.| ....|..+|++..
T Consensus 541 kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 541 KVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred hHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 46655544332 334 5567777777653
No 52
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.39 E-value=3.2e-11 Score=121.43 Aligned_cols=273 Identities=13% Similarity=0.140 Sum_probs=197.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCC
Q 008633 184 NVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKV 263 (558)
Q Consensus 184 ~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 263 (558)
+++-.|...|+.|+..||..+|..||..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 56777888899999999999999999999999888 8888887777778888888888888888877665
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHH
Q 008633 264 LFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMK-EKGCGPDTNAYNA 342 (558)
Q Consensus 264 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~ 342 (558)
.|...+|..|..+|...|++.. |+...+ -...+...+...|.-.....++..+. ..+.-||.. .
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n 144 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---N 144 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---H
Confidence 4678899999999999998776 333222 12234445556666555555555432 234445543 3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCC-CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008633 343 VISNYISVGDFDECMKYYKGMSSYNC-EPNMDTYTRLISGLLKS-RKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSY 420 (558)
Q Consensus 343 li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 420 (558)
.+....-.|-++.+++++..+.-... .|..+ .++-.... ..+++-..+.+...+ .|+..+|.+++++-...
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaa 217 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAA 217 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhc
Confidence 45555667888888888877754321 12222 23333322 334433333333332 58999999999998999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008633 421 GPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQ 492 (558)
Q Consensus 421 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 492 (558)
|+.+.|..++.+|.+.|++.+..-|-.|+-+ .+....++.+++.|.+.|+.|+..|+...+..+..+|.
T Consensus 218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999999999999999999988877777654 88888899999999999999999999988888888665
No 53
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.39 E-value=4.7e-11 Score=120.27 Aligned_cols=338 Identities=12% Similarity=0.079 Sum_probs=234.4
Q ss_pred hcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 008633 154 IKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDA 233 (558)
Q Consensus 154 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 233 (558)
++..|+.|+-+||..+|.-||..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+. .|..
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 446789999999999999999999999998 9999988888888999999999999999888776 6788
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Q 008633 234 ESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVA-EGFSPDSLTFSFLIEGL 312 (558)
Q Consensus 234 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~ 312 (558)
.+|..|..+|...||+.. |+.... -.-.++..+...|.-..-..++..+.- .+.-||..+ .+.-.
T Consensus 84 Dtyt~Ll~ayr~hGDli~----fe~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illl 149 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL----FEVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLL 149 (1088)
T ss_pred hHHHHHHHHHHhccchHH----HHHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHH
Confidence 899999999999999876 332222 122345566667776666666665432 244566554 34444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 313 GRAGRIDDAIEVFDTMKEKGCG-PDTNAYNAVISNYISVG-DFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVAD 390 (558)
Q Consensus 313 ~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 390 (558)
...|-++.+.+++..+...... |... +++-+.... .+++-..+.....+ .|+..+|..++.+-..+|+.+.
T Consensus 150 v~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~ 222 (1088)
T KOG4318|consen 150 VLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDG 222 (1088)
T ss_pred HHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhh
Confidence 5667778888877666433211 1111 233333322 34444444444443 5999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 008633 391 ALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQE 470 (558)
Q Consensus 391 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 470 (558)
|..++.+|.+.|++.+...|..++-+ .++...+..+++-|.+.|+.|+..|+...+..+...|....+ +
T Consensus 223 Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~ 291 (1088)
T KOG4318|consen 223 AKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------E 291 (1088)
T ss_pred HHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------c
Confidence 99999999999999999888888754 788888999999999999999999999887777775552221 2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH------------HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 471 SGYPSDGEIYEYVIAGLCNIGQLENAVLVMEE------------SLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKI 538 (558)
Q Consensus 471 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~------------m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 538 (558)
.| .+....+.+-+..-.-.| ..|.+.++. ..-.|+.....+|... .-....|+-++..++...|
T Consensus 292 e~-sq~~hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c-~~l~hQgk~e~veqlvg~l 367 (1088)
T KOG4318|consen 292 EG-SQLAHGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMC-EKLRHQGKGEEVEQLVGQL 367 (1088)
T ss_pred cc-cchhhhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHH-HHHHHcCCCchHHHHHhhh
Confidence 23 223333333222222223 333333332 2223655555444433 3345579999999988887
Q ss_pred H
Q 008633 539 K 539 (558)
Q Consensus 539 ~ 539 (558)
.
T Consensus 368 ~ 368 (1088)
T KOG4318|consen 368 L 368 (1088)
T ss_pred c
Confidence 5
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=8.2e-10 Score=101.80 Aligned_cols=200 Identities=12% Similarity=0.039 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008633 337 TNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEP 416 (558)
Q Consensus 337 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 416 (558)
...+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3455556666666666666666666665442 3334555666666666666666666666665543 2233445555556
Q ss_pred HHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 008633 417 LCSYGPPHAAMMMYKKARKVGC-KLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLEN 495 (558)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 495 (558)
+...|++++|.+.++++.+... ......+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 6666677777766666655321 2234455666777788888888888888877653 3345677788888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 496 AVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 496 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
|...++++.+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888888776 234566677777888888888888888877764
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=99.36 E-value=1.7e-09 Score=112.44 Aligned_cols=147 Identities=10% Similarity=-0.080 Sum_probs=63.9
Q ss_pred HhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 249 VGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTM 328 (558)
Q Consensus 249 ~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 328 (558)
+++|...+++.....|.+..++..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++.
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4444444444444444444444444444444555555555555544432 112333444444444455555555555554
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 329 KEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEP-NMDTYTRLISGLLKSRKVADALEVFEEM 398 (558)
Q Consensus 329 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (558)
.+.... +...+..++..+...|++++|...++++.+.. .| +...+..+..++...|++++|...+.++
T Consensus 399 l~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 399 LKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 444322 11112222223333445555555554444322 12 2223344444444455555555555444
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=1.3e-09 Score=100.36 Aligned_cols=94 Identities=15% Similarity=0.082 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008633 163 VKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWC 242 (558)
Q Consensus 163 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 242 (558)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3444444444555555555555555444332 1223344444444444444444444444444332 1122333333333
Q ss_pred HHhcCCHhHHHHHHHH
Q 008633 243 LCQRLHVGAASSLFNS 258 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~ 258 (558)
+...|++++|.+.+++
T Consensus 109 ~~~~g~~~~A~~~~~~ 124 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQ 124 (234)
T ss_pred HHHcccHHHHHHHHHH
Confidence 3344444444444433
No 57
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=3.7e-12 Score=85.18 Aligned_cols=50 Identities=42% Similarity=0.734 Sum_probs=38.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008633 265 FNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGR 314 (558)
Q Consensus 265 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 314 (558)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57777777777777777777777777777777777777777777777764
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=1.5e-09 Score=112.92 Aligned_cols=181 Identities=14% Similarity=0.014 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 318 IDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEE 397 (558)
Q Consensus 318 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 397 (558)
+++|...+++..+.... +...+..+...+...|++++|...|++..+.+ +.+...|..+...+...|++++|...+++
T Consensus 320 ~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45555555555554333 44455555555555555555555555555443 23344455555555555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-
Q 008633 398 MLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSD- 476 (558)
Q Consensus 398 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~- 476 (558)
..+.+.. +...+..++..+...|++++|...++++.+...+-+...+..+..++...|+.++|...++++... .|+
T Consensus 398 Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~ 474 (553)
T PRK12370 398 CLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITG 474 (553)
T ss_pred HHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchh
Confidence 5554211 111112222234445555555555555544322223334444555555566666666665555433 222
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008633 477 GEIYEYVIAGLCNIGQLENAVLVMEESLR 505 (558)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 505 (558)
....+.+...|+..| ++|...++++.+
T Consensus 475 ~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 475 LIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 223333334444444 355555555443
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=5.2e-12 Score=84.47 Aligned_cols=50 Identities=24% Similarity=0.504 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIR 210 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~ 210 (558)
||+.+||++|++|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888887763
No 60
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=6.2e-08 Score=92.12 Aligned_cols=364 Identities=14% Similarity=0.100 Sum_probs=248.6
Q ss_pred hHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHhCCHHHHHH-
Q 008633 143 GEAMVLFFNWAIKHPNVAKD-VKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPD-LETLSIVMDSFIRAGQVYKAIQ- 219 (558)
Q Consensus 143 ~~~~~~ff~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~-~~t~~~li~~~~~~g~~~~A~~- 219 (558)
.+.|..++.|+..- .|| .+-|......|...|+|++..+...+..+. .|+ +..+..-.+++-..|++++|+.
T Consensus 131 Y~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~eal~D 205 (606)
T KOG0547|consen 131 YDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFDEALFD 205 (606)
T ss_pred HHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHHHHHHh
Confidence 47889999999864 467 777888888999999999998887777664 344 2345555566666677776652
Q ss_pred ---------------------HHHH---------HHhCC--CCCCHHHHHHHHHHHHhc---------------------
Q 008633 220 ---------------------MLGR---------LEDFG--LKFDAESLNVVLWCLCQR--------------------- 246 (558)
Q Consensus 220 ---------------------~~~~---------~~~~g--~~~~~~~~~~ll~~~~~~--------------------- 246 (558)
++.. +.+.+ +-|+....++....+...
T Consensus 206 ~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~ 285 (606)
T KOG0547|consen 206 VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALE 285 (606)
T ss_pred hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHH
Confidence 1111 11111 223433333333222110
Q ss_pred ----C---CHhHHHHHHHHhhcC--CCC--C---------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008633 247 ----L---HVGAASSLFNSMKGK--VLF--N---------VMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFS 306 (558)
Q Consensus 247 ----~---~~~~A~~~~~~m~~~--~~~--~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 306 (558)
+ .+..|...+.+-... ..+ + ..+.+.-...+.-.|+...|..-|+...+....++. .|.
T Consensus 286 ~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI 364 (606)
T KOG0547|consen 286 ALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYI 364 (606)
T ss_pred HHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHH
Confidence 0 122222222211100 001 1 112222222234468888999999998886533332 377
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC
Q 008633 307 FLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSR 386 (558)
Q Consensus 307 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 386 (558)
.+...|....+.++..+.|++....+.. +..+|..-..++.-.+++++|..=|++.+... +-++..|..+--+..+.+
T Consensus 365 ~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~ 442 (606)
T KOG0547|consen 365 KRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQH 442 (606)
T ss_pred HHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHH
Confidence 7888899999999999999999988765 67788888888888999999999999998764 456677878888888899
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-------CCHHHHHHHHHHHHcCCChh
Q 008633 387 KVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCK-------LSLTAYKLLLRRLSGFGKCG 459 (558)
Q Consensus 387 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~ 459 (558)
++++++..|++.+++ .+.....|+.+...+...++++.|.+.|+..++.... +.+.+-..++..- -.+++.
T Consensus 443 k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~ 520 (606)
T KOG0547|consen 443 KIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDIN 520 (606)
T ss_pred HHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHH
Confidence 999999999999886 4556788999999999999999999999988874322 1122222333222 338899
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008633 460 MLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKL 522 (558)
Q Consensus 460 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 522 (558)
.|..++.+..+.+ +-....|..|...-.+.|+.++|+++|++.... ..|-.-++.+|
T Consensus 521 ~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l-----Art~~E~~~a~ 577 (606)
T KOG0547|consen 521 QAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL-----ARTESEMVHAY 577 (606)
T ss_pred HHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----HHhHHHHHHHH
Confidence 9999999999864 223458999999999999999999999998754 34444455554
No 61
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.29 E-value=1.4e-07 Score=92.78 Aligned_cols=369 Identities=15% Similarity=0.119 Sum_probs=184.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVL 240 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 240 (558)
.+.++|..+.-.+...+++++|+..|......+ +-|...+.-+.-.-++.|+++.....-..+.+.. +.....|..+.
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~A 150 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFA 150 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHH
Confidence 344555555555555555555555555555443 2344444444444445555555544444444321 11233444444
Q ss_pred HHHHhcCCHhHHHHHHHHhhcCC--CCChhhHHHHHHHH------HhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHH
Q 008633 241 WCLCQRLHVGAASSLFNSMKGKV--LFNVMTYNIVISGW------SKLGQVVEMERVLKEIVAEGFSPDSLTF-SFLIEG 311 (558)
Q Consensus 241 ~~~~~~~~~~~A~~~~~~m~~~~--~~~~~~~~~li~~~------~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~ 311 (558)
.++.-.|+...|..+.+...... .|+...|.-....+ .+.|..++|.+.+..-... ..|...+ .+-...
T Consensus 151 vs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l 228 (700)
T KOG1156|consen 151 VAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADL 228 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHH
Confidence 44445555555555555544321 23444443333222 1233444444433322211 1122221 222333
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHH-HHHHHhhhCCCCCCHHHHHHH-HHHHHhcCCH
Q 008633 312 LGRAGRIDDAIEVFDTMKEKGCGPDTN-AYNAVISNYISVGDFDECM-KYYKGMSSYNCEPNMDTYTRL-ISGLLKSRKV 388 (558)
Q Consensus 312 ~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~ 388 (558)
+.+.+++++|..++..+.... ||.. .|..+..++.+..+.-+++ .+|....+. .|....-..+ +....-..-.
T Consensus 229 ~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~ 304 (700)
T KOG1156|consen 229 LMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELK 304 (700)
T ss_pred HHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhH
Confidence 445555555555555555542 2222 2222333333222222332 333333321 1111110000 1111111122
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----cC----------CCCCHH--HHHHHHHHH
Q 008633 389 ADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARK----VG----------CKLSLT--AYKLLLRRL 452 (558)
Q Consensus 389 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~----------~~~~~~--~~~~li~~~ 452 (558)
+..-.++..+.+.|+++--..+.++ |-.....+-..++.-.+.. .| -+|... ++-.++..+
T Consensus 305 ~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~ 381 (700)
T KOG1156|consen 305 EIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHY 381 (700)
T ss_pred HHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHH
Confidence 2333445555666655433332222 2111111111111111111 11 134443 455678889
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008633 453 SGFGKCGMLLDLWHEMQESGYPSDG-EIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESA 531 (558)
Q Consensus 453 ~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 531 (558)
-+.|+++.|..+++...++ .|+. ..|..-.+.+.+.|.+++|..++++..+.+ .+|..+-..-+.-..++++.++|
T Consensus 382 D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA 458 (700)
T KOG1156|consen 382 DKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEA 458 (700)
T ss_pred HHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHH
Confidence 9999999999999999987 5654 356666788999999999999999999876 57877776788888999999999
Q ss_pred HHHHHHHHHhcC
Q 008633 532 YNLFRKIKIARQ 543 (558)
Q Consensus 532 ~~~~~~m~~~~~ 543 (558)
.++..+..+.|.
T Consensus 459 ~~~~skFTr~~~ 470 (700)
T KOG1156|consen 459 EEVLSKFTREGF 470 (700)
T ss_pred HHHHHHhhhccc
Confidence 999999988775
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.28 E-value=5.4e-09 Score=103.88 Aligned_cols=237 Identities=22% Similarity=0.215 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhh-----CC-CC
Q 008633 303 LTFSFLIEGLGRAGRIDDAIEVFDTMKEK-----GC-GPDTN-AYNAVISNYISVGDFDECMKYYKGMSS-----YN-CE 369 (558)
Q Consensus 303 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~-~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-~~ 369 (558)
.+...+...|...|++++|..+++...+. |. .|.+. ..+.+...|...+++++|..+|+++.. .| ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445666666667777766666665443 21 12222 233466677788888888888877753 12 11
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---C--CC-CCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHc---CC
Q 008633 370 P-NMDTYTRLISGLLKSRKVADALEVFEEMLD---R--GI-VPST-GTITSFLEPLCSYGPPHAAMMMYKKARKV---GC 438 (558)
Q Consensus 370 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~--~~-~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~ 438 (558)
| -..+++.|..+|++.|++++|...+++..+ . |. .|.. ..++.+...|+..+++++|..+++...+. -.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2 234566677778888888887777766532 1 21 1222 23556666778888888888888866542 11
Q ss_pred CC----CHHHHHHHHHHHHcCCChhHHHHHHHHHHHC----CC--CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHh--
Q 008633 439 KL----SLTAYKLLLRRLSGFGKCGMLLDLWHEMQES----GY--PS-DGEIYEYVIAGLCNIGQLENAVLVMEESLR-- 505 (558)
Q Consensus 439 ~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 505 (558)
.+ -..+++.|...|.+.|++++|.++++++... +- .+ ....++.|...|.+.+++++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 11 2467888999999999999999999887631 11 11 244678888899999999999988888653
Q ss_pred --CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 506 --KGF-CPS-RLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 506 --~g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
.|. .|+ ..+|..|...|.+.|+++.|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 221 233 5789999999999999999999988876
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.25 E-value=1.1e-07 Score=95.80 Aligned_cols=292 Identities=13% Similarity=0.110 Sum_probs=201.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--
Q 008633 169 IVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQR-- 246 (558)
Q Consensus 169 li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~-- 246 (558)
...++...|++++|++.+++-... +......+......+.+.|+.++|..++..+.+.+. .+..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcc
Confidence 345678899999999999876554 333455667778899999999999999999999863 3555566666665332
Q ss_pred ---CCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 247 ---LHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVV-EMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAI 322 (558)
Q Consensus 247 ---~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 322 (558)
.+.+...++|+++....| ...+...+.-.+.....+. .+..++..+...|+++ +|+.+-..|....+..-..
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp-~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYP-RSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccccHHHHHHHHHHHHHhCc-cccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 357778888998876653 2222222222222222333 3456677777788653 4444555555455555555
Q ss_pred HHHHHHHHC----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhc
Q 008633 323 EVFDTMKEK----G----------CGPDTN--AYNAVISNYISVGDFDECMKYYKGMSSYNCEPN-MDTYTRLISGLLKS 385 (558)
Q Consensus 323 ~~~~~m~~~----g----------~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~ 385 (558)
+++...... | -+|+.. ++..+...|...|++++|++++++.++. .|+ +..|..-.+.|-..
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHC
Confidence 555554432 1 133443 4466678889999999999999999987 455 67888889999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH------HH--HHHHHHHHcCCC
Q 008633 386 RKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLT------AY--KLLLRRLSGFGK 457 (558)
Q Consensus 386 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~--~~li~~~~~~g~ 457 (558)
|++.+|.+.++...... .-|...=+-.+..+.+.|+.++|.+++....+.+..|... .| .....+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999998864 2344555566777788999999999999887766433221 12 334677889999
Q ss_pred hhHHHHHHHHHH
Q 008633 458 CGMLLDLWHEMQ 469 (558)
Q Consensus 458 ~~~A~~~~~~m~ 469 (558)
+..|++.|..+.
T Consensus 321 ~~~ALk~~~~v~ 332 (517)
T PF12569_consen 321 YGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHHH
Confidence 999987766654
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=1.5e-09 Score=97.56 Aligned_cols=234 Identities=12% Similarity=0.082 Sum_probs=161.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008633 267 VMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISN 346 (558)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 346 (558)
-.--+.|..+|.+.|.+.+|.+.++.-.+. .|-+.||..|-++|.+..+.+.|+.++.+-.+. ++-|+.....+.+.
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHH
Confidence 333456777888888888888877777664 456667777778888888888888887776665 33355455556677
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 008633 347 YISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAA 426 (558)
Q Consensus 347 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 426 (558)
+...++.++|.++|+...+.. +.++.....+..+|.-.++.+.|+..++++.+.|+. +...|+.+.-+|...++++-+
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhh
Confidence 777788888888888777654 456666666777777778888888888888877753 445555555556666777777
Q ss_pred HHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008633 427 MMMYKKARKVGCKLS--LTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESL 504 (558)
Q Consensus 427 ~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (558)
+.-|.+....-..|+ ...|..+-......|++..|.+.|+-...++ ..+...++.|.-.-.+.|++++|..++..+.
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 777777665433333 3455556666666777777777777777654 3356677777777777777777777777766
Q ss_pred hC
Q 008633 505 RK 506 (558)
Q Consensus 505 ~~ 506 (558)
..
T Consensus 457 s~ 458 (478)
T KOG1129|consen 457 SV 458 (478)
T ss_pred hh
Confidence 43
No 65
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.24 E-value=3.9e-08 Score=99.05 Aligned_cols=127 Identities=17% Similarity=0.075 Sum_probs=70.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008633 411 TSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNI 490 (558)
Q Consensus 411 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 490 (558)
..+...|-..|++++|+.++++.++.. +-.+..|..-.+.|-+.|++.+|.+.++.....+ .-|...-+-.+..+.+.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHC
Confidence 333444555666666666666666543 2224555556666666666666666666666554 22444555555566666
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHH------H--HHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 491 GQLENAVLVMEESLRKGFCPSRL------V--YSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 491 g~~~~A~~~~~~m~~~g~~p~~~------~--~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
|++++|.+.+....+.+..|-.. . ......+|.+.|++..|++-|..+.
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666666555544322211 1 1234556666666666666555543
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=1.3e-09 Score=98.01 Aligned_cols=226 Identities=15% Similarity=0.101 Sum_probs=103.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 169 IVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLH 248 (558)
Q Consensus 169 li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~ 248 (558)
|.+.|.+.|.+.+|...|+.-.+. .|-+.||..+-+.|.+..+...|+.++.+-.+. ++-|+.......+.+-..++
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 444444555555555555444443 234445555555555555555555555444432 12222223333344444455
Q ss_pred HhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 249 VGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTM 328 (558)
Q Consensus 249 ~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 328 (558)
.++|.++++......+.|+.+...+..+|.-.++.+-|+++|+++.+.|+. +...|+.+.-+|.-.++++-++.-|+..
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 555555555444444444444444444455555555555555555555433 4444444444444445555555444444
Q ss_pred HHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 329 KEKGCGPD--TNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEML 399 (558)
Q Consensus 329 ~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (558)
...-..|+ ..+|-.+.......||+.-|.+.|+-....+ .-+...++.|.-.-.+.|++++|..++....
T Consensus 385 lstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 385 LSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 43322222 2234444444444455555555554444332 2233444444444444555555555544443
No 67
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=7.8e-08 Score=93.19 Aligned_cols=272 Identities=10% Similarity=0.026 Sum_probs=179.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008633 266 NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVIS 345 (558)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 345 (558)
+........+-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=.++.+.-+. .+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHH
Confidence 44555555666667778888888888777652 344555555566777777777777776777666333 5667777777
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChh
Q 008633 346 NYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVP-STGTITSFLEPLCSYGPPH 424 (558)
Q Consensus 346 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~ 424 (558)
.|...|+..+|.+.|.+....+ +.=...|-.....|.-.|..++|+..+...-+.=..- -+..|..+ -|.+.+..+
T Consensus 321 YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgm--ey~~t~n~k 397 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGM--EYMRTNNLK 397 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHH--HHHHhccHH
Confidence 7777788888888888766432 2224567777777777888888887777665531101 11222222 366677788
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHHhcCCHhHHHH
Q 008633 425 AAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQES--GYP----SDGEIYEYVIAGLCNIGQLENAVL 498 (558)
Q Consensus 425 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~----p~~~~~~~li~~~~~~g~~~~A~~ 498 (558)
.|.+.|..+.... +.|+..++-+.-.....+.+.+|..+|+..... .+. --..+++.|.++|.+.+++++|+.
T Consensus 398 LAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 8888887776542 445666666666666677788888777766521 001 122357777778888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCch
Q 008633 499 VMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQNDY 546 (558)
Q Consensus 499 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 546 (558)
.+++.+... +-+..++.++.-.|...|+++.|.+.|.+.. .+.|+
T Consensus 477 ~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~ 521 (611)
T KOG1173|consen 477 YYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPD 521 (611)
T ss_pred HHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCc
Confidence 888877653 4567788888888888888888888887765 44444
No 68
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=8.8e-08 Score=92.83 Aligned_cols=282 Identities=14% Similarity=0.082 Sum_probs=120.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008633 232 DAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEG 311 (558)
Q Consensus 232 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 311 (558)
+......-.+-+...+++.+..++++.+-+..|++...+..-|.++...|+..+-..+=.+|++.- +-...+|-++.--
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHH
Confidence 333333344444444444444444444444444444444444444444444444444444444331 1223444444444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008633 312 LGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADA 391 (558)
Q Consensus 312 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 391 (558)
|...|+..+|.+.|.+....... =...|-...+.|+-.|.-|+|...+....+.= +-..-.+--+.--|.+.++.+-|
T Consensus 322 Yl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHH
Confidence 44444444444444444332211 12234444444444444444444444333210 00011111122233344444444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc----C--CCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 008633 392 LEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKV----G--CKLSLTAYKLLLRRLSGFGKCGMLLDLW 465 (558)
Q Consensus 392 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 465 (558)
.+.|.+..... +.|+..++-+.-.....+.+.+|..+|+..... + ...-..+++.|..+|.+.+++++|+..+
T Consensus 400 e~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 44444443321 122233333332233344444444444433310 0 0012334555555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008633 466 HEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSN 520 (558)
Q Consensus 466 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 520 (558)
+...... +.|..++..+.-.|...|+++.|+..|.+.+ .+.|+..+-..++.
T Consensus 479 q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 479 QKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLK 530 (611)
T ss_pred HHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHH
Confidence 5555432 3355555555555555566666666665555 33455444443333
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.1e-07 Score=86.68 Aligned_cols=309 Identities=13% Similarity=0.062 Sum_probs=217.0
Q ss_pred CCCCHHHHHHHHHHHH--HhCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhH
Q 008633 194 VNPDLETLSIVMDSFI--RAGQVYKAIQMLGRLEDF-GLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTY 270 (558)
Q Consensus 194 ~~~~~~t~~~li~~~~--~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~ 270 (558)
+.|+..+...-+.+++ ..++...|.+.+-.+... -++-++.....+..++...|+.++|...|++...-.|-++...
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 4444444444444443 345555555555444432 3556778888999999999999999999998876655555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008633 271 NIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISV 350 (558)
Q Consensus 271 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 350 (558)
......+.+.|+.+....+...+.... .-+..-|..-.......++++.|+.+-++.++.... +...|-.-...+...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhc
Confidence 555666778899998888888876542 112223333334445667888999988888776443 555666666788889
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCChhHHHH
Q 008633 351 GDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFL-EPLC-SYGPPHAAMM 428 (558)
Q Consensus 351 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll-~~~~-~~g~~~~a~~ 428 (558)
++.++|.--|+...... +-+..+|.-|+.+|...|++.+|..+-+...+. +..+..+.+.+. ..|. ....-++|.+
T Consensus 348 ~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred cchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHH
Confidence 99999999999887653 457889999999999999999998877766553 233445554442 2222 2233477888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 008633 429 MYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGF 508 (558)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 508 (558)
+++...+.. +.-....+.+...+...|+.++++.+++..... .||....+.|.+.+...+.+.+|...|..+++.
T Consensus 426 f~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~-- 500 (564)
T KOG1174|consen 426 FAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ-- 500 (564)
T ss_pred HHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--
Confidence 887776643 222456677778888899999999999888764 678889999999999999999999999988865
Q ss_pred CCC
Q 008633 509 CPS 511 (558)
Q Consensus 509 ~p~ 511 (558)
.|+
T Consensus 501 dP~ 503 (564)
T KOG1174|consen 501 DPK 503 (564)
T ss_pred Ccc
Confidence 455
No 70
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.14 E-value=3.2e-06 Score=83.33 Aligned_cols=202 Identities=11% Similarity=0.094 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------C
Q 008633 338 NAYNAVISNYISVGDFDECMKYYKGMSSYNCEPN---MDTYTRLISGLLKSRKVADALEVFEEMLDRG-----------I 403 (558)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~ 403 (558)
..|..+.+.|-..|+++.|..+|++..+...+-- ..+|..-...-.+..+++.|.++.+.....- .
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 3567778888888999999999988876542211 3455555566667778888888877664321 1
Q ss_pred CCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH
Q 008633 404 VPS------TGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDG 477 (558)
Q Consensus 404 ~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 477 (558)
++. ...|...++.--..|-++....+|+++.+..+.-.....| ....+-...-++++.++|++-+..--.|+.
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 111 1234444444445677777788888887754322211111 111234455577788887766553334554
Q ss_pred -HHHHHHHHHHHhc---CCHhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 478 -EIYEYVIAGLCNI---GQLENAVLVMEESLRKGFCPSRL--VYSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 478 -~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
..|+..+.-+.+. -+.+.|..+|+++++ |.+|... .|......=.+.|....|+.++++....
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3777777666542 368999999999998 6665532 2322223334578888999999887644
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.14 E-value=3.2e-08 Score=98.52 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhC-----CC-CCCHH-HHHHHHHHHHhcCCHhHHHHHHHHhhc-------C-
Q 008633 198 LETLSIVMDSFIRAGQVYKAIQMLGRLEDF-----GL-KFDAE-SLNVVLWCLCQRLHVGAASSLFNSMKG-------K- 262 (558)
Q Consensus 198 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~-----g~-~~~~~-~~~~ll~~~~~~~~~~~A~~~~~~m~~-------~- 262 (558)
..+...+...|...|++++|+.+++...+. |. .|.+. ..+.+...|...+++++|..+|+++.. .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666777777888888888777776543 21 11221 122344455556666666655555421 1
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 263 VLFNVMTYNIVISGWSKLGQVVEMERVLKEIV 294 (558)
Q Consensus 263 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 294 (558)
.+.-..+++.|...|.+.|++++|...+++..
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al 310 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERAL 310 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 22223345555556666666666655555443
No 72
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.8e-06 Score=79.45 Aligned_cols=309 Identities=12% Similarity=0.049 Sum_probs=217.0
Q ss_pred CCCHHHHHHHHHHHHh--cCCHhHHHH--HHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 008633 230 KFDAESLNVVLWCLCQ--RLHVGAASS--LFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTF 305 (558)
Q Consensus 230 ~~~~~~~~~ll~~~~~--~~~~~~A~~--~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 305 (558)
++...+...-+.+++. .++...|.. ++-+.....+-|+.....+...+...|+.++|+..|++.... .|+..+-
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~ 268 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEA 268 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhhh
Confidence 3333344444444443 344334433 444445567889999999999999999999999999988764 2433221
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 008633 306 -SFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLK 384 (558)
Q Consensus 306 -~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 384 (558)
..-.-.+.+.|+.+....+...+....-. ....|-.-........+++.|+.+-++.++.+ +.++..|-.-...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHh
Confidence 11122345778888888887777655211 33344444555667789999999999988764 4556666666678888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-cCCChhHHH
Q 008633 385 SRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLL-RRLS-GFGKCGMLL 462 (558)
Q Consensus 385 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~~A~ 462 (558)
.|+.++|.-.|+..+... +-+...|..++.+|...|...+|..+-+...+. ...+..+...+. ..+. .-.--++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 999999999999987752 346689999999999999999998877665542 233444544442 2222 122347788
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 463 DLWHEMQESGYPSDG-EIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 463 ~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
++++.-.+. .|+. ...+.+...+...|+.++++.++++.+.. .||......|.+.+...+.+++|.+.|....
T Consensus 425 kf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL-- 498 (564)
T KOG1174|consen 425 KFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL-- 498 (564)
T ss_pred HHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHH--
Confidence 888877654 5553 35667777888999999999999999864 7999999999999999999999999998876
Q ss_pred cCCchhhhh
Q 008633 542 RQNDYARRL 550 (558)
Q Consensus 542 ~~~~~~~~~ 550 (558)
++.|+....
T Consensus 499 r~dP~~~~s 507 (564)
T KOG1174|consen 499 RQDPKSKRT 507 (564)
T ss_pred hcCccchHH
Confidence 455554433
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.11 E-value=8.5e-07 Score=87.65 Aligned_cols=92 Identities=22% Similarity=0.215 Sum_probs=51.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCH--HHHHHHHHHHH
Q 008633 307 FLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNC-EPNM--DTYTRLISGLL 383 (558)
Q Consensus 307 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~--~~~~~li~~~~ 383 (558)
.+...+...|++++|.+.+++..+.... +...+..+..+|...|++++|..++++..+..- .++. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 4444555666666666666666655422 344555666666666666666666666554321 1221 23445556666
Q ss_pred hcCCHHHHHHHHHHHH
Q 008633 384 KSRKVADALEVFEEML 399 (558)
Q Consensus 384 ~~g~~~~A~~~~~~m~ 399 (558)
..|++++|..++++..
T Consensus 198 ~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 198 ERGDYEAALAIYDTHI 213 (355)
T ss_pred HCCCHHHHHHHHHHHh
Confidence 6666666666666654
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.07 E-value=4.5e-06 Score=82.56 Aligned_cols=385 Identities=12% Similarity=0.049 Sum_probs=232.8
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 008633 145 AMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRL 224 (558)
Q Consensus 145 ~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~ 224 (558)
..+.+.+-+.+..+-.+ .|.....-.+...|+-++|.+.+....+..+. +.+.|+.+.-.+-...++++|++.|..+
T Consensus 25 kgLK~~~~iL~k~~eHg--eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nA 101 (700)
T KOG1156|consen 25 KGLKLIKQILKKFPEHG--ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNA 101 (700)
T ss_pred hHHHHHHHHHHhCCccc--hhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 44455555555333223 33333334455667888888777776665432 5567777777777777888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHH
Q 008633 225 EDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEG-FSPDSL 303 (558)
Q Consensus 225 ~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~ 303 (558)
.+.+ +-|..++.-+.-.-++.++++.....-.+.-+..+.....|...+.++.-.|+...|..++++..+.. ..|+..
T Consensus 102 l~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~ 180 (700)
T KOG1156|consen 102 LKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKE 180 (700)
T ss_pred HhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHH
Confidence 8765 33667777666666677777776666665555555577788888888888888888888888887754 346666
Q ss_pred HHHHHHH------HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 008633 304 TFSFLIE------GLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTR 377 (558)
Q Consensus 304 t~~~ll~------~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 377 (558)
.|..... ...+.|..++|.+.+..-... +.-....-.+-...+.+.+++++|..++..+... .||..-|..
T Consensus 181 ~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~ 257 (700)
T KOG1156|consen 181 DYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYE 257 (700)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHH
Confidence 6544332 234567777777766654443 2212333345567788888888888888888876 466665555
Q ss_pred HHH-HHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 008633 378 LIS-GLLKSRKVADAL-EVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGF 455 (558)
Q Consensus 378 li~-~~~~~g~~~~A~-~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 455 (558)
... ++.+-.+.-++. .+|....+. .+-....-..-+.......-.+..-.++....+.|+++-- ..+...|-.-
T Consensus 258 ~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf---~dl~SLyk~p 333 (700)
T KOG1156|consen 258 GLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVF---KDLRSLYKDP 333 (700)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchh---hhhHHHHhch
Confidence 444 443344444444 555554443 1111111111111111122233344455566667765433 3333323222
Q ss_pred CChhHHHHHHHHHH----HCC----------CCCCHHHH--HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHH
Q 008633 456 GKCGMLLDLWHEMQ----ESG----------YPSDGEIY--EYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKL 518 (558)
Q Consensus 456 g~~~~A~~~~~~m~----~~~----------~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 518 (558)
.+.+-..++.-.+. ..| -+|....| ..++..+-+.|+++.|..+++.++.+ .|+ ...|..=
T Consensus 334 ~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~K 411 (700)
T KOG1156|consen 334 EKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVK 411 (700)
T ss_pred hHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHH
Confidence 22221112211111 111 14555444 45677788999999999999999955 788 5677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhc
Q 008633 519 SNKLLASNKLESAYNLFRKIKIAR 542 (558)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~m~~~~ 542 (558)
.+.+...|..++|..++++..+..
T Consensus 412 aRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 412 ARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcc
Confidence 788999999999999999988543
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.06 E-value=2.7e-07 Score=87.97 Aligned_cols=217 Identities=15% Similarity=0.064 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 282 QVVEMERVLKEIVAEG-FSPD--SLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMK 358 (558)
Q Consensus 282 ~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 358 (558)
..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|++..+.... +...|+.+...+...|++++|.+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 4445555555555321 1111 233555555566666666666666666655433 45566666666666666666666
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 008633 359 YYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGC 438 (558)
Q Consensus 359 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 438 (558)
.|++..+.. +-+..+|..+..++...|++++|.+.++...+.. |+..........+...++.++|...+.+.....
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 666666542 2234555556666666666666666666666542 322211111111233455666666665443321
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHC---CC---CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 008633 439 KLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQES---GY---PSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKG 507 (558)
Q Consensus 439 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 507 (558)
.++...+ .+ .....|+..++ ..+..+.+. .. +.....|..+...+.+.|++++|+..|++.++.+
T Consensus 196 ~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1221111 11 12223444333 233333321 00 1123567888888888888888888888888764
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.05 E-value=2.1e-06 Score=84.80 Aligned_cols=302 Identities=11% Similarity=-0.008 Sum_probs=182.5
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008633 235 SLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNV---MTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEG 311 (558)
Q Consensus 235 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 311 (558)
.|..+...+...|+.+.+.+.+.......+.+. .........+...|++++|.+.+++..+.. +.|...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence 344444455555666665555554433222221 122233445667788888888888887753 223334332 222
Q ss_pred HHh----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC
Q 008633 312 LGR----AGRIDDAIEVFDTMKEKGCGPD-TNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSR 386 (558)
Q Consensus 312 ~~~----~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 386 (558)
+.. .+..+.+.+.++. .....|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 222 3445555555544 1222333 3455567788899999999999999999875 455678888999999999
Q ss_pred CHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHcCCChh
Q 008633 387 KVADALEVFEEMLDRGI-VPST--GTITSFLEPLCSYGPPHAAMMMYKKARKVGC-KLSLTAY-K--LLLRRLSGFGKCG 459 (558)
Q Consensus 387 ~~~~A~~~~~~m~~~~~-~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~~~ 459 (558)
++++|...+++...... .++. ..+..+...+...|++++|..+++++..... .+..... + .++..+...|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 99999999999877532 2232 2345677788899999999999999865332 1222211 1 3344445555444
Q ss_pred HHHHH--HHHH-HHCCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC------C--CHHHHHHHHHHHHhcCC
Q 008633 460 MLLDL--WHEM-QESGY-PSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFC------P--SRLVYSKLSNKLLASNK 527 (558)
Q Consensus 460 ~A~~~--~~~m-~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~------p--~~~~~~~l~~~~~~~g~ 527 (558)
.+.+. +... ..... ............++...|+.++|...++.+...... . ..........++...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 33333 1111 11100 111122235667788899999999999998763211 1 12333334445678999
Q ss_pred HHHHHHHHHHHHHh
Q 008633 528 LESAYNLFRKIKIA 541 (558)
Q Consensus 528 ~~~A~~~~~~m~~~ 541 (558)
+++|.+.+......
T Consensus 323 ~~~A~~~L~~al~~ 336 (355)
T cd05804 323 YATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887643
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.02 E-value=4.8e-07 Score=86.24 Aligned_cols=218 Identities=14% Similarity=0.009 Sum_probs=130.8
Q ss_pred CChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 008633 177 KFFDFMCNVLSDMAKEG-VNPD--LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAAS 253 (558)
Q Consensus 177 ~~~~~a~~l~~~m~~~g-~~~~--~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~ 253 (558)
+..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|++..+... .+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566666666666432 1121 34566666777777888888888877776542 35677777777788888888888
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008633 254 SLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGC 333 (558)
Q Consensus 254 ~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 333 (558)
+.|++..+..|.+..+|..+...+...|++++|.+.|+...+.. |+..........+...++.++|...+++.....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 88877766556567777777777777888888888887777653 332212222222334567777777776654332
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008633 334 GPDTNAYNAVISNYISVGDFDECMKYYKGMSSY---NC---EPNMDTYTRLISGLLKSRKVADALEVFEEMLDRG 402 (558)
Q Consensus 334 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 402 (558)
.++...+ .+ .....|+...+ +.+..+.+. .. +.....|..+...+.+.|++++|...|++..+.+
T Consensus 196 ~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2222111 22 22234444333 233333321 10 1123467777777777788888888887777654
No 78
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.02 E-value=6.7e-06 Score=83.00 Aligned_cols=375 Identities=13% Similarity=0.044 Sum_probs=244.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCH-HHHH
Q 008633 159 VAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDA-ESLN 237 (558)
Q Consensus 159 ~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~ 237 (558)
+.-|...|..+.-++.+.|+++.+.+.|++.... .....+.|..+...+...|.-..|+.+++........|+. ..+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3457888999999999999999999999988664 3346678888888999999999999999887654433433 3333
Q ss_pred HHHHHHHh-cCCHhHHHHHHHHhhc-----CCCCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcC-CC
Q 008633 238 VVLWCLCQ-RLHVGAASSLFNSMKG-----KVLFNVMTYNIVISGWSKL-----------GQVVEMERVLKEIVAEG-FS 299 (558)
Q Consensus 238 ~ll~~~~~-~~~~~~A~~~~~~m~~-----~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g-~~ 299 (558)
..-..|.+ .+.+++++.+-.+... ........|..+.-+|... ....++++.+++..+.+ -.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33333332 3566666655554432 1112334455555555421 23456777888877654 33
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHH
Q 008633 300 PDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPN-MDTYTRL 378 (558)
Q Consensus 300 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l 378 (558)
|++.-|. .--|+..++++.|.+...+..+.+-..+...|..|.-.+...+++.+|+.+.+...+. .++ ......-
T Consensus 478 p~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~ 553 (799)
T KOG4162|consen 478 PLVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGK 553 (799)
T ss_pred chHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhh
Confidence 4444443 3345667889999999999988866668889999999999999999999998876543 111 0000000
Q ss_pred HHHHHhcCCHHHHHHHHHHH---------------------------------------------------HHCC-----
Q 008633 379 ISGLLKSRKVADALEVFEEM---------------------------------------------------LDRG----- 402 (558)
Q Consensus 379 i~~~~~~g~~~~A~~~~~~m---------------------------------------------------~~~~----- 402 (558)
|..-..-++.++|......+ ...|
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 01111112222221111111 0000
Q ss_pred ----CC--CC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 008633 403 ----IV--PS------TGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQE 470 (558)
Q Consensus 403 ----~~--p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 470 (558)
+. |+ ...+......+.+.+..++|...+.++.+.. +.....|......+...|+.++|.+.|.....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 00 11 1122233444555667777776666666543 45566777777778888999999999988886
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 471 SGYPSDGEIYEYVIAGLCNIGQLENAVL--VMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 471 ~~~~p~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
.+ +-++.+..++...+.+.|+..-|.. ++.++++.+ +.+...|..+...+.+.|+.++|.+.|.-..+.
T Consensus 713 ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 713 LD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred cC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 54 3355688889999999998887777 999999775 356899999999999999999999999877654
No 79
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1e-05 Score=79.34 Aligned_cols=121 Identities=11% Similarity=-0.019 Sum_probs=60.8
Q ss_pred HHHHHHHhcCChhHHHHHHH--------HHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHC--CCCCCHH---
Q 008633 412 SFLEPLCSYGPPHAAMMMYK--------KARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQES--GYPSDGE--- 478 (558)
Q Consensus 412 ~ll~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~--- 478 (558)
..+......|+++.|.+++. .+.+.+.. +.+...+...+.+.++-+.|..++.+.... .-.+...
T Consensus 381 ~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~ 458 (652)
T KOG2376|consen 381 LRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALL 458 (652)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHH
Confidence 34444455666666666666 33333322 334444555566665555555555544320 0011111
Q ss_pred -HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 479 -IYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFR 536 (558)
Q Consensus 479 -~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 536 (558)
++.-+...-.+.|+.++|..+++++++.. ++|..+...++.+|++. +.+.|..+-+
T Consensus 459 ~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 459 SLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred hHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 22223333345577777777777777643 45566666666666654 3445554443
No 80
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.01 E-value=3.2e-06 Score=94.59 Aligned_cols=338 Identities=11% Similarity=0.030 Sum_probs=214.1
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCC-------CC--hhhHHHHHHHH
Q 008633 207 SFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVL-------FN--VMTYNIVISGW 277 (558)
Q Consensus 207 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-------~~--~~~~~~li~~~ 277 (558)
.....|+.+.+..++..+.......+..........+...|++++|...++....... +. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777776653211112222334455566778999999998887643211 11 11223344556
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHH
Q 008633 278 SKLGQVVEMERVLKEIVAEGFSPDS----LTFSFLIEGLGRAGRIDDAIEVFDTMKEK----GCG-PDTNAYNAVISNYI 348 (558)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~~~~~li~~~~ 348 (558)
...|++++|...+++....-...+. ...+.+...+...|++++|...+++.... |.. ....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6899999999999988763111121 23455666677899999999999887643 211 11234566677888
Q ss_pred hcCCHHHHHHHHHHhhh----CCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHH
Q 008633 349 SVGDFDECMKYYKGMSS----YNCE--P-NMDTYTRLISGLLKSRKVADALEVFEEMLDR--GIVPS--TGTITSFLEPL 417 (558)
Q Consensus 349 ~~g~~~~A~~~~~~m~~----~~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~--~~~~~~ll~~~ 417 (558)
..|++++|...+++..+ .+.. + ....+..+...+...|++++|...+.+.... ...+. ...+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 99999999999887654 2211 1 2234455666677789999999999887543 11122 23344455566
Q ss_pred HhcCChhHHHHHHHHHHHcC--CCCCHH--H--HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 008633 418 CSYGPPHAAMMMYKKARKVG--CKLSLT--A--YKLLLRRLSGFGKCGMLLDLWHEMQESGYPSD---GEIYEYVIAGLC 488 (558)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~--~~~~~~--~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~ 488 (558)
...|+.+.|.+.+..+.... ...... . ....+..+...|+.+.|...+........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 77899999999988875421 111111 0 01122445567899999988877654221111 112345667788
Q ss_pred hcCCHhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 008633 489 NIGQLENAVLVMEESLRK----GFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIKIARQN 544 (558)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 544 (558)
..|+.++|...++++... |..++ ..+...+..++.+.|+.++|.+.+.+..+....
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 899999999999988753 33332 356777888899999999999999988765543
No 81
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=2.7e-06 Score=77.90 Aligned_cols=391 Identities=11% Similarity=0.045 Sum_probs=222.7
Q ss_pred HHHHHHcCCCchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Q 008633 132 VGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRA 211 (558)
Q Consensus 132 v~~~l~~~~~~~~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~ 211 (558)
+..++.+.+. ..|..|.++......-+- ..+--.+...+-+.|++++|...+.-+.... .++...+..+...+.-.
T Consensus 29 Ledfls~rDy--tGAislLefk~~~~~EEE-~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyL 104 (557)
T KOG3785|consen 29 LEDFLSNRDY--TGAISLLEFKLNLDREEE-DSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYL 104 (557)
T ss_pred HHHHHhcccc--hhHHHHHHHhhccchhhh-HHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHH
Confidence 4455554444 445566655543221111 1222234445568899999999998887753 56677777777777778
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 008633 212 GQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLK 291 (558)
Q Consensus 212 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 291 (558)
|.+.+|.++-....+ ++-.-..|+..-.+.++-++-..+-+.+... ..---+|.......-.+.+|++++.
T Consensus 105 g~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~----~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 105 GQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT----LEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred HHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh----HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 889998888765443 3333444555666677776666665555432 2223334444444557899999999
Q ss_pred HHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH---------
Q 008633 292 EIVAEGFSPDSLTFSFL-IEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYK--------- 361 (558)
Q Consensus 292 ~m~~~g~~p~~~t~~~l-l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------- 361 (558)
.....+ |+-...|.- .-+|.+..-++-+.++++-..+.- +-+...-|.......+.=+-..|+.-..
T Consensus 176 rvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 176 RVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE 252 (557)
T ss_pred HHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence 998763 555555543 446678888888999988877762 2244444444333322211111111111
Q ss_pred -----HhhhCC------------CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008633 362 -----GMSSYN------------CEPN-----MDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCS 419 (558)
Q Consensus 362 -----~m~~~~------------~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 419 (558)
.+.+.+ +-|. ...--.|+--|.+.+++.+|..+.+++.- ..|.......++. +.
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~--aa 328 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF--AA 328 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH--HH
Confidence 111111 0111 11223345557788999999988776532 2344443333332 22
Q ss_pred cC-------ChhHHHHHHHHHHHcCCCC-----------------------------------CHHHHHHHHHHHHcCCC
Q 008633 420 YG-------PPHAAMMMYKKARKVGCKL-----------------------------------SLTAYKLLLRRLSGFGK 457 (558)
Q Consensus 420 ~g-------~~~~a~~~~~~~~~~~~~~-----------------------------------~~~~~~~li~~~~~~g~ 457 (558)
.| ...-|.+.|+..-+++..- |....-.+.++++..|+
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgn 408 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGN 408 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcC
Confidence 22 2233444444333322111 11111234567778888
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 008633 458 CGMLLDLWHEMQESGYPSDGEIY-EYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLF 535 (558)
Q Consensus 458 ~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 535 (558)
+.+|+++|-.+....++ |..+| ..|.++|.+.++.+.|..++-++ +-+.+ ......+.+-|.+.+.+--|-+.|
T Consensus 409 y~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAF 484 (557)
T KOG3785|consen 409 YVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAF 484 (557)
T ss_pred hHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888887765555 44455 45567788888888887766443 22222 234445567788888888888888
Q ss_pred HHHHHhcCCch
Q 008633 536 RKIKIARQNDY 546 (558)
Q Consensus 536 ~~m~~~~~~~~ 546 (558)
+++......|.
T Consensus 485 d~lE~lDP~pE 495 (557)
T KOG3785|consen 485 DELEILDPTPE 495 (557)
T ss_pred hHHHccCCCcc
Confidence 88886555444
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.00 E-value=7.2e-07 Score=77.13 Aligned_cols=124 Identities=13% Similarity=-0.015 Sum_probs=51.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008633 170 VKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHV 249 (558)
Q Consensus 170 i~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~ 249 (558)
.-.|.+.|++..|..-+++..+.. +-+..+|..+...|-+.|..+.|.+.|++..+... -+-.+.|.....+|..|++
T Consensus 42 al~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHHhCCCh
Confidence 334444444444444444444432 11233444444444444444444444444444321 1333444444444444444
Q ss_pred hHHHHHHHHhhcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 250 GAASSLFNSMKGK--VLFNVMTYNIVISGWSKLGQVVEMERVLKEIVA 295 (558)
Q Consensus 250 ~~A~~~~~~m~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (558)
++|...|++.... .+.-..+|..+.-+..+.|+.+.|...|++..+
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 4444444443321 222233344444444444444444444444433
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.99 E-value=9.1e-07 Score=76.51 Aligned_cols=193 Identities=17% Similarity=0.050 Sum_probs=86.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 308 LIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRK 387 (558)
Q Consensus 308 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 387 (558)
+.-+|...|+...|.+-+++.++.... +..+|..+...|.+.|+.+.|.+-|++..+.. +-+..+.|....-+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCC
Confidence 344445555555555555555544322 33445555555555555555555555544432 2233444444444455555
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 008633 388 VADALEVFEEMLDRGIVP-STGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWH 466 (558)
Q Consensus 388 ~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 466 (558)
+++|...|++....-..+ -..+|..+.-+..+.|+.+.|...|++..+.. +-...+...+.+...+.|++..|..+++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 555555555544431111 11233333333334455555555554444432 1122333334444444455555555444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008633 467 EMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESL 504 (558)
Q Consensus 467 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (558)
.....+. ++..+....|..-...|+.+.|-++=.++.
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4444332 444444444444444555544444444433
No 84
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.99 E-value=2.1e-05 Score=77.88 Aligned_cols=371 Identities=11% Similarity=0.089 Sum_probs=204.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhC------CCCCCHHHHHHHH
Q 008633 167 NVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDF------GLKFDAESLNVVL 240 (558)
Q Consensus 167 ~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~------g~~~~~~~~~~ll 240 (558)
...+......+-++-++.++++..+. ++..-.--|..+++.+++++|.+.+..+... ..+.+-..|.-+.
T Consensus 142 ~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elc 217 (835)
T KOG2047|consen 142 DLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELC 217 (835)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHH
Confidence 33333334444455555555555442 3333455566666667777776666665432 1123444555555
Q ss_pred HHHHhcCCHh---HHHHHHHHhhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008633 241 WCLCQRLHVG---AASSLFNSMKGKVLF-NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAG 316 (558)
Q Consensus 241 ~~~~~~~~~~---~A~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 316 (558)
+..++.-+.- ....+++.+..+.+. =...|+.|.+.|.+.|.+++|.++|++.... ..++.-|+.+.++|+.-.
T Consensus 218 dlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FE 295 (835)
T KOG2047|consen 218 DLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFE 295 (835)
T ss_pred HHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHH
Confidence 5555443322 233344444433221 1235778888888888888888888877664 335555666666665321
Q ss_pred C----------------------HHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 008633 317 R----------------------IDDAIEVFDTMKEKGC-----------GPDTNAYNAVISNYISVGDFDECMKYYKGM 363 (558)
Q Consensus 317 ~----------------------~~~a~~~~~~m~~~g~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 363 (558)
. ++-.+.-|+.+...+. +-++..|..-+ -+..|+..+-...|.+.
T Consensus 296 E~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteA 373 (835)
T KOG2047|consen 296 ESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEA 373 (835)
T ss_pred HHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHH
Confidence 1 1112222333333211 01122222211 12245566666667766
Q ss_pred hhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008633 364 SSYNCEPN------MDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPS---TGTITSFLEPLCSYGPPHAAMMMYKKAR 434 (558)
Q Consensus 364 ~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (558)
.+. +.|. ...|..+...|-..|+.+.|..+|++..+...+-- ..+|..-...-.+..+++.|+++.+++.
T Consensus 374 v~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 374 VKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred HHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 653 2332 23466777778888888888888888776543221 1222222223334566777777777665
Q ss_pred HcCCCC-----------------CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 008633 435 KVGCKL-----------------SLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAV 497 (558)
Q Consensus 435 ~~~~~~-----------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 497 (558)
...-.| +...|...++..-..|-++....+|+.+.+..+- ++.........+-.+.-++++.
T Consensus 453 ~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesF 531 (835)
T KOG2047|consen 453 HVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESF 531 (835)
T ss_pred cCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHH
Confidence 532221 2345666666666778888888888888876543 3333333333445566788888
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhcCCchhh
Q 008633 498 LVMEESLRKGFCPS-RLVYSKLSNKLLA---SNKLESAYNLFRKIKIARQNDYAR 548 (558)
Q Consensus 498 ~~~~~m~~~g~~p~-~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 548 (558)
+++++-+..=-.|+ ...|+..+..+.+ .-+.+.|+.+|++..+ +.+|...
T Consensus 532 k~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 532 KAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHA 585 (835)
T ss_pred HHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHH
Confidence 88887665422344 3567666666643 4478999999999998 6666544
No 85
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.95 E-value=8.3e-06 Score=82.36 Aligned_cols=355 Identities=15% Similarity=0.107 Sum_probs=236.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCC--CCChhhH
Q 008633 193 GVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKV--LFNVMTY 270 (558)
Q Consensus 193 g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~--~~~~~~~ 270 (558)
.+.-|...|..+.-+..+.|+++.+.+.|++....-+ -..+.|..+-..|...|.-..|..+++.-.... +++...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 3556788888888889999999999999999886533 367789999999999999999999988765432 4444444
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCC-
Q 008633 271 NIVISGWS-KLGQVVEMERVLKEIVAE--GF--SPDSLTFSFLIEGLGRA-----------GRIDDAIEVFDTMKEKGC- 333 (558)
Q Consensus 271 ~~li~~~~-~~g~~~~A~~~~~~m~~~--g~--~p~~~t~~~ll~~~~~~-----------g~~~~a~~~~~~m~~~g~- 333 (558)
-..-..|. +.+.+++++++-.+.... |. ......|..+.-+|... ....++.+.+++..+.+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44444443 356777777776666652 11 12233444444444321 234567788888877654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC--------
Q 008633 334 GPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDR-GIV-------- 404 (558)
Q Consensus 334 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~-------- 404 (558)
.|++..| +.--|+..++++.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+...+. |..
T Consensus 477 dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKI 554 (799)
T ss_pred CchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence 4444444 44457788999999999999998866778899999999999999999999998876543 210
Q ss_pred ----------CCHHHHHHHHHHHHh-----------------------cCChhHHHHHHHHHH--------HcCC-----
Q 008633 405 ----------PSTGTITSFLEPLCS-----------------------YGPPHAAMMMYKKAR--------KVGC----- 438 (558)
Q Consensus 405 ----------p~~~~~~~ll~~~~~-----------------------~g~~~~a~~~~~~~~--------~~~~----- 438 (558)
-...|...++..+-. .++..+|......+. ..+.
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 001222222222220 011111111111110 0110
Q ss_pred ----C--CC------HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 439 ----K--LS------LTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 439 ----~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
. |+ ...|......+.+.+..++|...+.+..... +-....|......+...|+.++|.+.|..+...
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 0 11 2234455667778888888888888777643 334556777777788899999999999998855
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHHhcCCchhhhhhcccC
Q 008633 507 GFCPS-RLVYSKLSNKLLASNKLESAYN--LFRKIKIARQNDYARRLWRSKG 555 (558)
Q Consensus 507 g~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~~~~~~g 555 (558)
.|+ +....++..++.+.|+...|.. ++..+. ++.|.....|...|
T Consensus 714 --dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dal--r~dp~n~eaW~~LG 761 (799)
T KOG4162|consen 714 --DPDHVPSMTALAELLLELGSPRLAEKRSLLSDAL--RLDPLNHEAWYYLG 761 (799)
T ss_pred --CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHH--hhCCCCHHHHHHHH
Confidence 566 6788999999999999888888 887777 56777777776544
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=7.5e-07 Score=79.62 Aligned_cols=336 Identities=13% Similarity=0.154 Sum_probs=220.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHH
Q 008633 192 EGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYN 271 (558)
Q Consensus 192 ~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~ 271 (558)
.|+....--+..++..+.+..+++.|++++..-.+.. +.+......|..+|....++..|-..++++-...| ...-|.
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P-~~~qYr 81 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP-ELEQYR 81 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh-HHHHHH
Confidence 3444444457788888889999999999998877664 22777888899999999999999999999976544 333332
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008633 272 -IVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIE--GLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYI 348 (558)
Q Consensus 272 -~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 348 (558)
--...+.+.+.+..|+++...|... ++...-..-+. .....+++..+..++++....| +..+.+.......
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gClly 155 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLY 155 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheee
Confidence 3456777889999999999888653 33322222222 2345688888888888876433 4455555666677
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-------------CHH-------
Q 008633 349 SVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVP-------------STG------- 408 (558)
Q Consensus 349 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-------------~~~------- 408 (558)
+.|+++.|.+-|+...+.+---....|+..+. ..+.|+++.|++...++++.|++- |..
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~ 234 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLV 234 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHH
Confidence 99999999999999988654445566776554 456789999999999999887632 211
Q ss_pred -HHHHHHH-------HHHhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHH
Q 008633 409 -TITSFLE-------PLCSYGPPHAAMMMYKKARK-VGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEI 479 (558)
Q Consensus 409 -~~~~ll~-------~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 479 (558)
.-+.++. .+.+.|+.+.|.+.+..|-- .....|+.|...+.-. -..+++.+..+-+.-+.+.. +--..|
T Consensus 235 lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ET 312 (459)
T KOG4340|consen 235 LHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPET 312 (459)
T ss_pred HHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHH
Confidence 1122222 23456777777777766632 2334466665544221 22355555555555555443 233568
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 008633 480 YEYVIAGLCNIGQLENAVLVMEESLRKGF-CPSRLVYSKLSNKLL-ASNKLESAYNLFRKIK 539 (558)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~ 539 (558)
|..++-.||+..-++.|..++.+-...-+ ..+...|+ |++++. ..-..++|.+-++.+.
T Consensus 313 FANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 88888889999888888888765322211 12233343 445544 4557788877776664
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=8e-06 Score=79.23 Aligned_cols=219 Identities=14% Similarity=0.168 Sum_probs=118.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH-------H
Q 008633 306 SFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTR-------L 378 (558)
Q Consensus 306 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-------l 378 (558)
..+.++..+..+++.|.+-++...+.. -+..-++....+|...|.+.++....+...+.|. -...-|+. +
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHh
Confidence 344555555566666666666665554 2444555555666666666666655555554441 11111221 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh
Q 008633 379 ISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKC 458 (558)
Q Consensus 379 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 458 (558)
..+|.+.++++.|+..|.+.......|+... +....+++........-.+... ..--..-...+.+.|++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCH
Confidence 2344455566666666665444332322211 1111122222222221111111 01111113456677888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 459 GMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRK 537 (558)
Q Consensus 459 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 537 (558)
..|+..|.+++... +-|...|....-+|.+.|.+..|+.-.+..++. .|+ ...|..=..++....++++|.+.|.+
T Consensus 375 ~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877765 556677777787888888888888877777765 344 45555555566666677777777777
Q ss_pred HHH
Q 008633 538 IKI 540 (558)
Q Consensus 538 m~~ 540 (558)
-.+
T Consensus 452 ale 454 (539)
T KOG0548|consen 452 ALE 454 (539)
T ss_pred HHh
Confidence 664
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=2.2e-06 Score=76.69 Aligned_cols=327 Identities=13% Similarity=0.084 Sum_probs=221.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHH
Q 008633 166 YNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNV-VLWCLC 244 (558)
Q Consensus 166 ~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-ll~~~~ 244 (558)
+.+.+..+.+..++..|++++..-.++. +-+......+..+|.+..++..|-..++++-.. -|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 5667777788999999999999888774 237778888889999999999999999998875 344444432 245677
Q ss_pred hcCCHhHHHHHHHHhhcCCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 245 QRLHVGAASSLFNSMKGKVLFNVMTYNIVISG--WSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAI 322 (558)
Q Consensus 245 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 322 (558)
+.+.+.+|+.+...|... ++...-..-+.+ ....+++..+..++++....| +..+.+...-...+.|+++.|.
T Consensus 90 ~A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HhcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 889999999999988753 222222222222 234678888888888776443 4445444444557899999999
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-------------CHH--------HHHHHHH
Q 008633 323 EVFDTMKEK-GCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEP-------------NMD--------TYTRLIS 380 (558)
Q Consensus 323 ~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-------------~~~--------~~~~li~ 380 (558)
+-|+...+- |.. ....|+..+. ..+.|+++.|++...+++++|++- |+. .-+.++.
T Consensus 165 qkFqaAlqvsGyq-pllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 165 QKFQAALQVSGYQ-PLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHhhcCCC-chhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 999998776 555 4567876554 457789999999999999987532 211 1123333
Q ss_pred H-------HHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008633 381 G-------LLKSRKVADALEVFEEMLDR-GIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRL 452 (558)
Q Consensus 381 ~-------~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 452 (558)
+ +.+.|+++.|.+.+.+|--. ....|.+|...+.- --..+++....+-+.-+...+ +....|+..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al-~n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL-MNMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH-hcccCCccccHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 3 45678999999988888532 23456677655432 123456666666666666654 34568888899999
Q ss_pred HcCCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008633 453 SGFGKCGMLLDLWHEMQESGY-PSDGEIYEYVIAGLCNIGQLENAVLVMEESL 504 (558)
Q Consensus 453 ~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (558)
|+..-++-|.+++.+-...-. -.+...|+.+=......-..++|.+-++.+.
T Consensus 321 CKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred hhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999998876443211 1133334433222334456788877777654
No 89
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.86 E-value=2.5e-05 Score=71.53 Aligned_cols=314 Identities=16% Similarity=0.123 Sum_probs=180.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHHhCCHHHHHHHHHHHHhCCCCCCHHH-HH
Q 008633 162 DVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIV---MDSFIRAGQVYKAIQMLGRLEDFGLKFDAES-LN 237 (558)
Q Consensus 162 ~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~l---i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~ 237 (558)
++.-.--+.+.+..+|++..|+.-|....+. |+..|.++ ...|...|+-..|+.=+.++.+. +||-.. -.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 4444555666666777777777777666543 34444444 34566677777777777776653 455322 11
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008633 238 VVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGR 317 (558)
Q Consensus 238 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 317 (558)
.-...+.+.|.++.|..-|+.+....+.+. ....++.+.-..++-.. ....+..+...|+
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~----~~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNG----LVLEAQSKLALIQEHWV----------------LVQQLKSASGSGD 170 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcc----hhHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCc
Confidence 223345666777777777766655433111 11111111111111111 1223334455677
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 318 IDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEE 397 (558)
Q Consensus 318 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 397 (558)
...|++....+.+..+ -|+..|..-..+|...|++..|+.=++...+.. .-+..++--+-..+...|+.+.++...++
T Consensus 171 ~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred hhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 7777777777777633 377777777777888888777776666655433 34455555666667777777777777777
Q ss_pred HHHCCCCCCHHH----HHHH---H------HHHHhcCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHcCCChhHH
Q 008633 398 MLDRGIVPSTGT----ITSF---L------EPLCSYGPPHAAMMMYKKARKVGCKLSLT---AYKLLLRRLSGFGKCGML 461 (558)
Q Consensus 398 m~~~~~~p~~~~----~~~l---l------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A 461 (558)
..+. .||... |..+ . ......+++.+++.-.+...+........ .+..+-.++...+++.+|
T Consensus 249 CLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eA 326 (504)
T KOG0624|consen 249 CLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEA 326 (504)
T ss_pred HHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHH
Confidence 7664 355422 1111 1 11223455556666666655544332222 233444556667778888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 462 LDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 462 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
++...+..+.. +.|+.++---..+|.-...++.|+.-|+.+.+.
T Consensus 327 iqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 327 IQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 88888877653 334667777777777777888888888877765
No 90
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=9.4e-05 Score=76.89 Aligned_cols=333 Identities=16% Similarity=0.207 Sum_probs=152.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGV--NPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNV 238 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~--~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 238 (558)
.|...-..-+.++...+-..+.++++++..-... .-+...-+.+|-...+ -+.....+..+++..... |+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~------ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PD------ 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hh------
Confidence 3444555566666677777777777766653321 1111122222222222 233444444444443321 11
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 008633 239 VLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRI 318 (558)
Q Consensus 239 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 318 (558)
+.......+-+++|..+|+...- +..+.+.||.- .+..+.|.++-++.. ....|..+..+-.+.|..
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~----n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDM----NVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcc----cHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence 12223334445555555554422 22333333322 133333333322221 223444555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 319 DDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEM 398 (558)
Q Consensus 319 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (558)
.+|.+-|-+. -|+..|.-+++...+.|.+++-.+++....+..-+|.+. +.||-+|++.++..+.++.+
T Consensus 1121 ~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi--- 1189 (1666)
T KOG0985|consen 1121 KDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI--- 1189 (1666)
T ss_pred HHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh---
Confidence 5554433221 144445555555555555555555555444443334333 34555555555554443332
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc--------------------CCCCCHHHHHHHHHHHHcCCCh
Q 008633 399 LDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKV--------------------GCKLSLTAYKLLLRRLSGFGKC 458 (558)
Q Consensus 399 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------------------~~~~~~~~~~~li~~~~~~g~~ 458 (558)
.-|+......+.+-|...|.++.|.-+|...... .-..+..+|..+-.+|...+.+
T Consensus 1190 ----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EF 1265 (1666)
T KOG0985|consen 1190 ----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEF 1265 (1666)
T ss_pred ----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhh
Confidence 1244444444444444555554444444321110 0012334444444444443333
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 459 GMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFC-PSRLVYSKLSNKLLASNKLESAYNLFRK 537 (558)
Q Consensus 459 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 537 (558)
.- .+|....+-....-..-++..|-..|-+++-+.+++..+ |+. .....|+.|.-.|.+- ++++..+.++-
T Consensus 1266 rl-----AQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYsky-kp~km~EHl~L 1337 (1666)
T KOG0985|consen 1266 RL-----AQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILYSKY-KPEKMMEHLKL 1337 (1666)
T ss_pred hH-----HHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 21 223333333344556778888888888888888887765 432 2346677776666653 34444444443
No 91
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.80 E-value=3e-05 Score=86.91 Aligned_cols=334 Identities=12% Similarity=-0.017 Sum_probs=210.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC------CCC--HHHHHHHHHHHHh
Q 008633 174 GRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGL------KFD--AESLNVVLWCLCQ 245 (558)
Q Consensus 174 ~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~------~~~--~~~~~~ll~~~~~ 245 (558)
...|+++.+...++.+.......+..........+...|++++|..++......-- .+. ......+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 34456665555555542111111222233344555678999999999987754211 111 1222233445667
Q ss_pred cCCHhHHHHHHHHhhcCCCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhc
Q 008633 246 RLHVGAASSLFNSMKGKVLF-N----VMTYNIVISGWSKLGQVVEMERVLKEIVAE----GF-SPDSLTFSFLIEGLGRA 315 (558)
Q Consensus 246 ~~~~~~A~~~~~~m~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~~ll~~~~~~ 315 (558)
.|+++.|...+++.....+. + ....+.+...+...|++++|...+++.... |- .....++..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 89999999999886542221 1 234566777788899999999999888753 11 11123455667778899
Q ss_pred CCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC--CHHHHHHHHHHHHh
Q 008633 316 GRIDDAIEVFDTMKEK----GCG--P-DTNAYNAVISNYISVGDFDECMKYYKGMSSYN--CEP--NMDTYTRLISGLLK 384 (558)
Q Consensus 316 g~~~~a~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p--~~~~~~~li~~~~~ 384 (558)
|++++|...+++.... |.. + ....+..+...+...|++++|...+++..... ..+ ....+..+...+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 9999999998876543 221 1 23345566677888899999999999875421 112 23345556667888
Q ss_pred cCCHHHHHHHHHHHHHCC--CCCCH---HHH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcC
Q 008633 385 SRKVADALEVFEEMLDRG--IVPST---GTI-TSFLEPLCSYGPPHAAMMMYKKARKVGCKLS---LTAYKLLLRRLSGF 455 (558)
Q Consensus 385 ~g~~~~A~~~~~~m~~~~--~~p~~---~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~ 455 (558)
.|++++|.+.+.+..... ..... ... ...+..+...|+.+.|..++........... ...+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 999999999998875421 11111 111 1122334557899999888766544221111 11234567778899
Q ss_pred CChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 008633 456 GKCGMLLDLWHEMQE----SGYPSD-GEIYEYVIAGLCNIGQLENAVLVMEESLRKG 507 (558)
Q Consensus 456 g~~~~A~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 507 (558)
|+.++|...+++... .|...+ ..+...+..++...|+.++|...+.++.+..
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999988764 232222 2356667778899999999999999998763
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.76 E-value=5e-07 Score=84.92 Aligned_cols=248 Identities=15% Similarity=0.119 Sum_probs=139.8
Q ss_pred HHhcCCHhHHHHHHHHhhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008633 243 LCQRLHVGAASSLFNSMKGKV-LFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDA 321 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 321 (558)
+.-.|++..++.-.+ ..... ..+......+.+++...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344677777775555 22221 123444556677777788766543 3333332 55555554444444333444445
Q ss_pred HHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 322 IEVFDTMKEKGCG-PDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 322 ~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
..-+++....+.. .+.........++...|++++|++++... .+.......+..|++.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444443333322 22333333335566678888888777643 3566667777888888888888888888876
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC
Q 008633 401 RGIVPSTGTITSFLEPLCS----YGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSD 476 (558)
Q Consensus 401 ~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 476 (558)
.+ .| .+...+..++.. .+.+..|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..+.+ +-|
T Consensus 160 ~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~ 234 (290)
T PF04733_consen 160 ID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PND 234 (290)
T ss_dssp CS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCH
T ss_pred cC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCC
Confidence 42 33 333344444443 23577777777776553 45667777777777777777777777777766544 335
Q ss_pred HHHHHHHHHHHHhcCCH-hHHHHHHHHHHhC
Q 008633 477 GEIYEYVIAGLCNIGQL-ENAVLVMEESLRK 506 (558)
Q Consensus 477 ~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 506 (558)
..+...+|.+....|+. +.+.+++.++...
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 55666667666677766 5566677666643
No 93
>PLN02789 farnesyltranstransferase
Probab=98.76 E-value=1.5e-05 Score=76.07 Aligned_cols=247 Identities=11% Similarity=0.078 Sum_probs=128.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD-SLTFSFLIEGLGRAG-RIDDAIEVFDTMKEKGCGPDTNAYNAVISN 346 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 346 (558)
++..+-..+...++.++|+.+..++++.. |+ ...|+..-.++...| ++++++..++++.+.... +..+|+.....
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHH
Confidence 34444444555556666666666665532 32 233444334444444 355666666666555433 44445544444
Q ss_pred HHhcCCH--HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 008633 347 YISVGDF--DECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPH 424 (558)
Q Consensus 347 ~~~~g~~--~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 424 (558)
+.+.|+. ++++.+++++.+.. +.|..+|+....++...|+++++++.++++++.+. -+...|+.....+.+.+...
T Consensus 116 l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccc
Confidence 4444432 45555555555443 34555555555555555666666666666655432 22233332222222111000
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHhHHHHHH
Q 008633 425 AAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNI----GQLENAVLVM 500 (558)
Q Consensus 425 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~ 500 (558)
+ .....++.+++..+++... +-|...|+.+...+... ++..+|.+++
T Consensus 194 ------------~----------------~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 194 ------------G----------------LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred ------------c----------------ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 0 0001234555555555543 34556677766666663 3445677777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcC------------------CHHHHHHHHHHHHHhcCCchhhhhhc
Q 008633 501 EESLRKGFCPSRLVYSKLSNKLLASN------------------KLESAYNLFRKIKIARQNDYARRLWR 552 (558)
Q Consensus 501 ~~m~~~g~~p~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~~~~~~~~~~~~~~ 552 (558)
.+....+ ..+......|++.|+... ..++|.++++.+. ...|-...||.
T Consensus 245 ~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~--~~d~ir~~yw~ 311 (320)
T PLN02789 245 LEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE--VADPMRRNYWA 311 (320)
T ss_pred HHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH--hhCcHHHHHHH
Confidence 7766543 234566777777776532 3477999999883 67787788884
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.74 E-value=5.8e-07 Score=84.49 Aligned_cols=246 Identities=13% Similarity=0.109 Sum_probs=105.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 008633 174 GRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAAS 253 (558)
Q Consensus 174 ~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~ 253 (558)
--.|++..++.-.+ .....-..+......+.+++...|+.+.++ .++.+.. .|.......+...+...++-+.+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 34566666654444 222111122334455566666666655432 3332222 344444433333332223333444
Q ss_pred HHHHHhhcC-CC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 254 SLFNSMKGK-VL-FNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEK 331 (558)
Q Consensus 254 ~~~~~m~~~-~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 331 (558)
.-++..... .. .+..........+...|++++|++++..- .+.......+..+.+.++++.|.+.++.|.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 333332211 11 12222222233444556666666655432 23444445555666666666666666666544
Q ss_pred CCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 008633 332 GCGPDTNAYNAVISNY----ISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPST 407 (558)
Q Consensus 332 g~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 407 (558)
+ .|.. ...+..++ .-.+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+ +-+.
T Consensus 161 ~--eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~ 235 (290)
T PF04733_consen 161 D--EDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDP 235 (290)
T ss_dssp S--CCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHH
T ss_pred C--CcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCH
Confidence 2 2222 22222222 2223456666666665443 23455555555555666666666666655554432 1223
Q ss_pred HHHHHHHHHHHhcCCh-hHHHHHHHHHHH
Q 008633 408 GTITSFLEPLCSYGPP-HAAMMMYKKARK 435 (558)
Q Consensus 408 ~~~~~ll~~~~~~g~~-~~a~~~~~~~~~ 435 (558)
.+...++......|+. +.+.+++..+..
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 3333444444444444 334444444443
No 95
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=0.00027 Score=69.63 Aligned_cols=366 Identities=11% Similarity=0.076 Sum_probs=220.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHH
Q 008633 165 SYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGL-KFDAESLNVVLWCL 243 (558)
Q Consensus 165 ~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~ll~~~ 243 (558)
..-+=++.+..++++++|.....++...+ +-|...+..-+-++.+.+++++|+.+.+. .+. ..+...+--=..+.
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGALLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cchhhhcchhhHHHHHHH
Confidence 44445677889999999999999998876 55677888888889999999999865543 221 11111111123344
Q ss_pred HhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------------------
Q 008633 244 CQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSP----------------------- 300 (558)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----------------------- 300 (558)
.+.+..++|+..++..... +..+...-...+.+.|++++|+++|+.+.+++..-
T Consensus 90 Yrlnk~Dealk~~~~~~~~---~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~ 166 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRL---DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQS 166 (652)
T ss_pred HHcccHHHHHHHHhccccc---chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHh
Confidence 5678999999999844332 55566777788899999999999999997654221
Q ss_pred ----CHHHHHHHHH---HHHhcCCHHHHHHHHHHHHHCCC-------CCCH-------HHHHHHHHHHHhcCCHHHHHHH
Q 008633 301 ----DSLTFSFLIE---GLGRAGRIDDAIEVFDTMKEKGC-------GPDT-------NAYNAVISNYISVGDFDECMKY 359 (558)
Q Consensus 301 ----~~~t~~~ll~---~~~~~g~~~~a~~~~~~m~~~g~-------~p~~-------~~~~~li~~~~~~g~~~~A~~~ 359 (558)
...+|..+.+ .+...|++.+|+++++...+.+. .-+. .+-..|..++-..|+.++|..+
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 1123333332 24467888899988888733221 1011 1223345567788889999998
Q ss_pred HHHhhhCCCCCCHHHH----HHHHHHHHhcCCHH----------------HHHHHH------------------------
Q 008633 360 YKGMSSYNCEPNMDTY----TRLISGLLKSRKVA----------------DALEVF------------------------ 395 (558)
Q Consensus 360 ~~~m~~~~~~p~~~~~----~~li~~~~~~g~~~----------------~A~~~~------------------------ 395 (558)
+...++.+ .+|...- |.|+..-....-++ .+..-|
T Consensus 247 y~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q 325 (652)
T KOG2376|consen 247 YVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQ 325 (652)
T ss_pred HHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 88888776 4454322 22222110000000 000000
Q ss_pred -HHHHHC--CCCCCHHHHHHHHHHHHhc--CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHH----
Q 008633 396 -EEMLDR--GIVPSTGTITSFLEPLCSY--GPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWH---- 466 (558)
Q Consensus 396 -~~m~~~--~~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~---- 466 (558)
++.... +..| ...+..++..+.+. .....+..++...-+....-+..+.-.++......|+++.|++++.
T Consensus 326 ~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 326 VRELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 000000 1112 22333343333221 2345555555555554323335566677788889999999999998
Q ss_pred ----HHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 467 ----EMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK--GFCPS----RLVYSKLSNKLLASNKLESAYNLFR 536 (558)
Q Consensus 467 ----~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~ 536 (558)
.+.+.+..| .+..++...+.+.++.+.|..++.+++.- .-.+. ..++..+...-.+.|+-++|..+++
T Consensus 405 ~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le 482 (652)
T KOG2376|consen 405 SWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE 482 (652)
T ss_pred hhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH
Confidence 666655555 35556666778888877788887777642 11122 2334444444467899999999999
Q ss_pred HHHHh
Q 008633 537 KIKIA 541 (558)
Q Consensus 537 ~m~~~ 541 (558)
++.+.
T Consensus 483 el~k~ 487 (652)
T KOG2376|consen 483 ELVKF 487 (652)
T ss_pred HHHHh
Confidence 99863
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.73 E-value=9.1e-05 Score=67.95 Aligned_cols=364 Identities=12% Similarity=0.061 Sum_probs=195.5
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHH
Q 008633 130 DVVGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETL-SIVMDSF 208 (558)
Q Consensus 130 ~~v~~~l~~~~~~~~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~-~~li~~~ 208 (558)
++-..++.++... ++...| .-+.. +-+.+-.++-.-...|...|+...|+.=+....+. +||...- ..-...+
T Consensus 43 ElGk~lla~~Q~s-DALt~y-HaAve--~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLS-DALTHY-HAAVE--GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHH-HHHHHH-HHHHc--CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 4555666666654 343333 22221 11223344444456788899999999888888875 6775432 2234567
Q ss_pred HHhCCHHHHHHHHHHHHhCCCCCC--HHHHH------------HHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHH
Q 008633 209 IRAGQVYKAIQMLGRLEDFGLKFD--AESLN------------VVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVI 274 (558)
Q Consensus 209 ~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~------------~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li 274 (558)
.+.|.++.|..=|+.+.+....-. ...+. ..+..+...|+...|++....+.+-.+.|+..|..-.
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Ra 196 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARA 196 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHH
Confidence 899999999999999997643211 11111 1122233344555555555555444444555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 008633 275 SGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFD 354 (558)
Q Consensus 275 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 354 (558)
.+|...|++..|+.-++...+.. .-+..++-.+-..+...|+.+.++...++..+. .||-..+- -.| ..+.
T Consensus 197 kc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf---~~Y---Kklk 267 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCF---PFY---KKLK 267 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHH---HHH---HHHH
Confidence 55555555555544444433321 112333333444444445555444444444433 12211110 001 1111
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCChhHHHHHHH
Q 008633 355 ECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTIT---SFLEPLCSYGPPHAAMMMYK 431 (558)
Q Consensus 355 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~---~ll~~~~~~g~~~~a~~~~~ 431 (558)
+..+.++.|. .....+++.++++-.+...+....-....|+ .+-.++...|++.+|++...
T Consensus 268 Kv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 268 KVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred HHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 2222222222 2344667777777777777664332233333 33344445688999999988
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC
Q 008633 432 KARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS 511 (558)
Q Consensus 432 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 511 (558)
++.+.. +.|+.++.--..+|.-...+++|+.-|+...+.+ +.|... +.| .+.|.++.++.-++
T Consensus 332 evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n-~sn~~~---------reG-le~Akrlkkqs~kR----- 394 (504)
T KOG0624|consen 332 EVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN-ESNTRA---------REG-LERAKRLKKQSGKR----- 394 (504)
T ss_pred HHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-cccHHH---------HHH-HHHHHHHHHHhccc-----
Confidence 888754 3458888888889999999999999999998764 222211 111 23444444332221
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 008633 512 RLVYSKLSNKLLASNKLESAYNLFRKIKIARQN 544 (558)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 544 (558)
.-|..|. --++-.-.+..+.+++|-+.-.+
T Consensus 395 -DYYKILG--VkRnAsKqEI~KAYRKlAqkWHP 424 (504)
T KOG0624|consen 395 -DYYKILG--VKRNASKQEITKAYRKLAQKWHP 424 (504)
T ss_pred -hHHHHhh--hcccccHHHHHHHHHHHHHhcCC
Confidence 2333332 33555667788888888765443
No 97
>PF12854 PPR_1: PPR repeat
Probab=98.71 E-value=2.1e-08 Score=60.09 Aligned_cols=32 Identities=47% Similarity=0.910 Sum_probs=17.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 367 NCEPNMDTYTRLISGLLKSRKVADALEVFEEM 398 (558)
Q Consensus 367 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (558)
|+.||..||++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 98
>PF12854 PPR_1: PPR repeat
Probab=98.66 E-value=4.2e-08 Score=58.77 Aligned_cols=32 Identities=38% Similarity=0.842 Sum_probs=18.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 008633 332 GCGPDTNAYNAVISNYISVGDFDECMKYYKGM 363 (558)
Q Consensus 332 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 363 (558)
|+.||..+|++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555555
No 99
>PLN02789 farnesyltranstransferase
Probab=98.65 E-value=4.2e-05 Score=73.03 Aligned_cols=215 Identities=7% Similarity=-0.021 Sum_probs=149.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008633 165 SYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAG-QVYKAIQMLGRLEDFGLKFDAESLNVVLWCL 243 (558)
Q Consensus 165 ~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~ 243 (558)
+++.+-.++...++.++|+.+.+++.+.. +-+..+|+.--..+...| +++++++.++++.+...+ +..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 45556666777889999999999998763 224456666656666667 578999999998876543 556677666666
Q ss_pred HhcCCH--hHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCH
Q 008633 244 CQRLHV--GAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRA---GRI 318 (558)
Q Consensus 244 ~~~~~~--~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---g~~ 318 (558)
.+.|.. +++..+++.+.+..+-|..+|+...-++.+.|+++++++.++++.+.+.. |...|+.....+.+. |..
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 666653 67788888887776778889998888888889999999999999887643 556666655555443 222
Q ss_pred ----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 008633 319 ----DDAIEVFDTMKEKGCGPDTNAYNAVISNYISV----GDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLK 384 (558)
Q Consensus 319 ----~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 384 (558)
++..+...+++...+. |...|+.+...+... +...+|.+++.+..+.+ +.+......|+..|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 4566666666666444 667777777777663 34456777777766543 4456666677777764
No 100
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=0.00077 Score=70.46 Aligned_cols=262 Identities=13% Similarity=0.083 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008633 234 ESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLG 313 (558)
Q Consensus 234 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 313 (558)
.+|..+..+-.+.|.+.+|.+-|-+.. |...|.-+++...+.|.+++..+++...++..-+|...+ .|+-+|+
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyikad-----Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyA 1177 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKAD-----DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYA 1177 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhcC-----CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHH
Confidence 344444444444444444444432221 344445555555555555555554444444433333332 3444455
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 314 RAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALE 393 (558)
Q Consensus 314 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 393 (558)
+.+++.+..++. .-||......+.+-|...|.++.|.-+|.. +..|..|...+...|++..|.+
T Consensus 1178 kt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1178 KTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHH
Confidence 544444433322 123444444444444445555544444432 2335555566666666666655
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCC
Q 008633 394 VFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGY 473 (558)
Q Consensus 394 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 473 (558)
.-++. .+..||..+-.+|...+.+.-| +|...++.....-...++..|-..|.+++.+.+++......
T Consensus 1242 ~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE- 1309 (1666)
T KOG0985|consen 1242 AARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE- 1309 (1666)
T ss_pred Hhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-
Confidence 43332 2445666666666555444333 22223344456667788999999999999999888765321
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCCCC-------HHHHHHHHHHHHhcCCHHHHH
Q 008633 474 PSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK-GFCPS-------RLVYSKLSNKLLASNKLESAY 532 (558)
Q Consensus 474 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-------~~~~~~l~~~~~~~g~~~~A~ 532 (558)
+.....|+-|.-.|.+- ++++..+.++-...+ ++ |. ...|..|+-.|.+-..++.|.
T Consensus 1310 RAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNi-pKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1310 RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNI-PKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 22344666666666554 355555555544332 11 21 345666666666666555553
No 101
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=0.00036 Score=64.38 Aligned_cols=294 Identities=13% Similarity=0.035 Sum_probs=173.7
Q ss_pred hCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 008633 211 AGQVYKAIQMLGRLEDFGLKFDAESLNVV-LWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERV 289 (558)
Q Consensus 211 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 289 (558)
.-.+++|++++.++...+ |+-...|.- .-+|.+..-++.+.+++.--....|.+...-|..+....+.=+-..|.+-
T Consensus 164 R~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E 241 (557)
T KOG3785|consen 164 RMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDE 241 (557)
T ss_pred HHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHH
Confidence 345778888888877643 344444433 34566777777777777766666666666666665555443222222222
Q ss_pred HHHHHHcCC--------------------------CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 008633 290 LKEIVAEGF--------------------------SPD-----SLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTN 338 (558)
Q Consensus 290 ~~~m~~~g~--------------------------~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 338 (558)
..++...+- -|. ...-..++-.|.+.+++.+|..+.+++.-. .|-..
T Consensus 242 ~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~Ey 319 (557)
T KOG3785|consen 242 KKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEY 319 (557)
T ss_pred HHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHH
Confidence 222222110 011 011223344466778888887776554211 11111
Q ss_pred HHHHHH-----HHHHhcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 008633 339 AYNAVI-----SNYISVGDFDECMKYYKGMSSYNCEPNMD-TYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITS 412 (558)
Q Consensus 339 ~~~~li-----~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 412 (558)
....+. .-......+.-|.+.|+-.-+++..-|.. --.++...+.-..++++++-.++.....-..-|...+|
T Consensus 320 ilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N- 398 (557)
T KOG3785|consen 320 ILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN- 398 (557)
T ss_pred HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-
Confidence 111111 11222234667777777766665444432 24456666677778888888888877664444444444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcC
Q 008633 413 FLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYV-IAGLCNIG 491 (558)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g 491 (558)
+..+++..|.+.+|+++|-++....++.+..-...|.++|.+.++++.|.+++-.+.. +.+..+.-.+ ..-|.+.+
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~ 475 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKAN 475 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHH
Confidence 6778999999999999998776655554444455677889999999998776655543 3344444444 45688889
Q ss_pred CHhHHHHHHHHHHhCCCCCCHHH
Q 008633 492 QLENAVLVMEESLRKGFCPSRLV 514 (558)
Q Consensus 492 ~~~~A~~~~~~m~~~g~~p~~~~ 514 (558)
.+--|-+.|+++... .|++..
T Consensus 476 eFyyaaKAFd~lE~l--DP~pEn 496 (557)
T KOG3785|consen 476 EFYYAAKAFDELEIL--DPTPEN 496 (557)
T ss_pred HHHHHHHhhhHHHcc--CCCccc
Confidence 988888888877654 455443
No 102
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.62 E-value=3.8e-05 Score=82.43 Aligned_cols=233 Identities=13% Similarity=0.092 Sum_probs=174.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 008633 301 DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEK-GCG---PDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYT 376 (558)
Q Consensus 301 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 376 (558)
+...|..-|......++.++|.++.+++... ++. --...|.++++.-..-|.-+...++|+++.+.. -....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3456777777788888899999988887654 111 123467778887777888888889999888752 2345678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcC
Q 008633 377 RLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCK-LSLTAYKLLLRRLSGF 455 (558)
Q Consensus 377 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 455 (558)
.|...|.+.+++++|.++++.|.++ ..-....|...+..+.++.+.+.|..++.++.+.-.+ -........++.-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8888899999999999999999876 2345667888888888888888898898888774211 1344555566667788
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 008633 456 GKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS--RLVYSKLSNKLLASNKLESAYN 533 (558)
Q Consensus 456 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~ 533 (558)
|+.+.+..+|+...... +--...|+.+|+.=.++|+.+.+..+|++.+..++.|- ...|...+..=-+.|+-+.++.
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 99999999999888653 44566899999999999999999999999999988776 4667777766666677655554
Q ss_pred HHHH
Q 008633 534 LFRK 537 (558)
Q Consensus 534 ~~~~ 537 (558)
+=.+
T Consensus 1693 VKar 1696 (1710)
T KOG1070|consen 1693 VKAR 1696 (1710)
T ss_pred HHHH
Confidence 4333
No 103
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=6e-05 Score=75.92 Aligned_cols=238 Identities=11% Similarity=0.079 Sum_probs=173.9
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHH
Q 008633 196 PDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVIS 275 (558)
Q Consensus 196 ~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~ 275 (558)
|--..-..+...+...|-...|..+++++. .|..+|.+|+..|+..+|..+..+-.+ .+|+...|..+.+
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD 465 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence 333344556677888899999999998754 566788899999999999998887776 6778899999998
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 276 GWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDE 355 (558)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 355 (558)
......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+...- -..+|-.+..+..+.+++..
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHH
Confidence 888777788888888765432 1112222234478899999998887766432 55678888888889999999
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008633 356 CMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARK 435 (558)
Q Consensus 356 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (558)
|.+.|....... +-+...||.+-.+|.+.++-.+|...+.+..+.+..+. ..+-..+....+.|.+++|.+.+.++..
T Consensus 538 av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w-~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 538 AVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHW-QIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCC-eeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 999999887652 34567899999999999999999999999988774433 3343344456788999999999988765
Q ss_pred cC-CCCCHHHHHHHHHHHH
Q 008633 436 VG-CKLSLTAYKLLLRRLS 453 (558)
Q Consensus 436 ~~-~~~~~~~~~~li~~~~ 453 (558)
.. ...|..+...++....
T Consensus 616 ~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 616 LRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred hhhhcccchhhHHHHHHHH
Confidence 31 1224444444444433
No 104
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.60 E-value=0.0008 Score=65.74 Aligned_cols=151 Identities=13% Similarity=0.104 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhHHHHHHH
Q 008633 388 VADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKL-SLTAYKLLLRRLSGFGKCGMLLDLWH 466 (558)
Q Consensus 388 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 466 (558)
.+.....++++...-..--..+|..+++...+..-+..|..+|.++.+.+..+ ++..+++++.-+|. ++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 45555666666554222223456667777777778889999999998877666 77888888886664 66678888887
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 467 EMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS--RLVYSKLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 467 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
-=... ..-+..--...+..+.+.|+-..|..+|++.+..++.|+ ..+|..+++-=..-|+...+.++-+++..
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 65442 133444556778888888999999999999988876666 57899999888889999988888877654
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.60 E-value=4.2e-05 Score=82.10 Aligned_cols=187 Identities=12% Similarity=0.070 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008633 236 LNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRA 315 (558)
Q Consensus 236 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 315 (558)
|.++++.-...|.-+...++|++.-+-.. ....|..|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+.
T Consensus 1500 WiA~lNlEn~yG~eesl~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1500 WIAYLNLENAYGTEESLKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQ 1577 (1710)
T ss_pred HHHHHhHHHhhCcHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcc
Confidence 33444444444444444444444432211 1223444444455555555555555554443 112333444444444444
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008633 316 GRIDDAIEVFDTMKEKGCGP-DTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEV 394 (558)
Q Consensus 316 g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 394 (558)
++-+.|..++.+..+.-..- .+....-.+..-.+.|+.+.+..+|+...... +.-...|+..|+.-.+.|+.+.+..+
T Consensus 1578 ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~l 1656 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDL 1656 (1710)
T ss_pred cHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHH
Confidence 44444555544444331110 11122223333344555555555555554332 33344555555555555555555555
Q ss_pred HHHHHHCCCCCCH--HHHHHHHHHHHhcCChhH
Q 008633 395 FEEMLDRGIVPST--GTITSFLEPLCSYGPPHA 425 (558)
Q Consensus 395 ~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~ 425 (558)
|++....++.|.. ..|.-.+..--..|+-+.
T Consensus 1657 feRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1657 FERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred HHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 5555555544432 334444432223344333
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.59 E-value=1.1e-05 Score=78.96 Aligned_cols=221 Identities=12% Similarity=0.115 Sum_probs=149.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008633 312 LGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADA 391 (558)
Q Consensus 312 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 391 (558)
+.+.|++.+|.-.|+..++..+. +...|.-|.......++-..|+.-+++..+.. +-|......|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 34667777777777777776544 66677777777777777777777777777654 44566666677777777777777
Q ss_pred HHHHHHHHHCCCC-----C---CHHHHHHHHHHHHhcCChhHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHcCCChhHHH
Q 008633 392 LEVFEEMLDRGIV-----P---STGTITSFLEPLCSYGPPHAAMMMYKKA-RKVGCKLSLTAYKLLLRRLSGFGKCGMLL 462 (558)
Q Consensus 392 ~~~~~~m~~~~~~-----p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 462 (558)
..+++.-+....+ + +...-.. .............++|-++ ...+..+|+.++..|.-.|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 7777776543210 0 0000000 0001111122333444443 44555678888888888888889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 463 DLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 463 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
+.|+...... +-|...||-|...+....+.++|+..|.++++. .|+ +.+...|...|...|.+++|.+.|-...
T Consensus 451 Dcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9998888753 446678899998999989999999999998865 677 5677778888999999999888776544
No 107
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.59 E-value=8.4e-06 Score=79.77 Aligned_cols=251 Identities=10% Similarity=0.040 Sum_probs=112.2
Q ss_pred HHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 243 LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAI 322 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 322 (558)
+.+.|++.+|.-.|+......|-+...|-.|.......++-..|+..+++..+.. +-|......|.-.|...|.-..|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 3445555555555555554445555555555555555555555555555555432 113344444445555555555555
Q ss_pred HHHHHHHHCCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHhh-hCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 323 EVFDTMKEKGCGP--------DTNAYNAVISNYISVGDFDECMKYYKGMS-SYNCEPNMDTYTRLISGLLKSRKVADALE 393 (558)
Q Consensus 323 ~~~~~m~~~g~~p--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 393 (558)
+.++..+...++- +...-+. ..+.....+....++|-++. +.+..+|...+..|.-.|-..|++++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 5555543321100 0000000 01111112222333333332 22222444445555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHH--
Q 008633 394 VFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLS-LTAYKLLLRRLSGFGKCGMLLDLWHEMQE-- 470 (558)
Q Consensus 394 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 470 (558)
.|+..+... +-|..+||-|...++...+.++|+..|.++.+.. |+ +.+...|.-.|...|.+++|.+.|-..+.
T Consensus 452 cf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 452 CFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 555555432 2233445555555555555555555555555532 22 12222233335555555555554443321
Q ss_pred -C------CCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 008633 471 -S------GYPSDGEIYEYVIAGLCNIGQLENAVLV 499 (558)
Q Consensus 471 -~------~~~p~~~~~~~li~~~~~~g~~~~A~~~ 499 (558)
. +..++..+|.+|=.++.-.++.|.+.+.
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 1 1122344566655556666665544443
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=2.2e-05 Score=78.98 Aligned_cols=238 Identities=16% Similarity=0.146 Sum_probs=185.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008633 230 KFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLI 309 (558)
Q Consensus 230 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 309 (558)
+|--..-..+...+.+.|-...|..+|++.. .|.-+|.+|+..|+..+|..+..+..++ +||...|..+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 3444445567788899999999999998764 5778899999999999999999888873 68999999998
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008633 310 EGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVA 389 (558)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 389 (558)
+......-+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+.+ +--..+|-.+..+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence 8888877888888888775443 22233333445789999999999877654 456778888888899999999
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 008633 390 DALEVFEEMLDRGIVPST-GTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEM 468 (558)
Q Consensus 390 ~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 468 (558)
.|.+.|...... .||. ..||.+-.+|.+.++..+|...+++..+.+ .-+...|...+-...+.|.+++|++.+.++
T Consensus 537 ~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 537 AAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 999999988774 5554 679999999999999999999999999987 556667777777788999999999999988
Q ss_pred HHCC-CCCCHHHHHHHHHHHH
Q 008633 469 QESG-YPSDGEIYEYVIAGLC 488 (558)
Q Consensus 469 ~~~~-~~p~~~~~~~li~~~~ 488 (558)
.+.. ...|......++....
T Consensus 614 l~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 614 LDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHhhhhcccchhhHHHHHHHH
Confidence 7421 1225455555555444
No 109
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.54 E-value=5.4e-05 Score=75.97 Aligned_cols=318 Identities=18% Similarity=0.148 Sum_probs=180.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008633 165 SYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLC 244 (558)
Q Consensus 165 ~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~ 244 (558)
.-.+.+.++...|+-+.|-++- .. +-.+ ...|..|.+.|...+|......-.. +..|......+..++.
T Consensus 591 lk~sy~q~l~dt~qd~ka~elk----~s----dgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~ali 659 (1636)
T KOG3616|consen 591 LKRSYLQALMDTGQDEKAAELK----ES----DGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALI 659 (1636)
T ss_pred HHHHHHHHHHhcCchhhhhhhc----cc----cCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHH
Confidence 3455566777777777765432 11 1112 2457778888888777655422111 2235555555555555
Q ss_pred hcCCHhHHHHHHHHhhcC-----------------------CCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008633 245 QRLHVGAASSLFNSMKGK-----------------------VLFNVMTY-NIVISGWSKLGQVVEMERVLKEIVAEGFSP 300 (558)
Q Consensus 245 ~~~~~~~A~~~~~~m~~~-----------------------~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 300 (558)
+..-+++|-.+|+++..- .|..+++. ......+...|+++.|..-|-+.
T Consensus 660 k~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea------- 732 (1636)
T KOG3616|consen 660 KGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA------- 732 (1636)
T ss_pred hhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh-------
Confidence 555555555555544321 11111110 01112222233333333333221
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 008633 301 DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLIS 380 (558)
Q Consensus 301 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 380 (558)
......+.+...+..+.+|+.+++.+...... ..-|..+.+.|...|+++.|+++|.+.- .++-.|.
T Consensus 733 --~~~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~ 799 (1636)
T KOG3616|consen 733 --NCLIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAID 799 (1636)
T ss_pred --hhHHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHH
Confidence 11223455566778888888888887766432 3356777888899999999998887543 2456678
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhH
Q 008633 381 GLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGM 460 (558)
Q Consensus 381 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 460 (558)
.|.++|++++|.++-.+.. |.......|.+-..-+-..|++.+|.++|-.+- .|+ ..|.+|-+.|..+.
T Consensus 800 my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~dd 868 (1636)
T KOG3616|consen 800 MYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDD 868 (1636)
T ss_pred HHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchH
Confidence 8889999999888876653 223344555555555666788877777764332 232 23566777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 461 LLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFR 536 (558)
Q Consensus 461 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 536 (558)
.+++..+-...- -..|.-.+..-+-..|++..|...|-++- -|.+-++.|..++.|++|.++-+
T Consensus 869 mirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 869 MIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 766665443211 12245555666667777777776665432 34455566677777777766654
No 110
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.51 E-value=0.00027 Score=71.19 Aligned_cols=52 Identities=13% Similarity=0.069 Sum_probs=28.1
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 452 LSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 452 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
.+..+.++-|.++-+-..+.. .|. ....+...+-..|++++|-+.+-+.++.
T Consensus 973 a~d~~afd~afdlari~~k~k-~~~--vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 973 AADNCAFDFAFDLARIAAKDK-MGE--VHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred hhcccchhhHHHHHHHhhhcc-Ccc--chhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 334444455554444433322 222 2333444456778899988888777754
No 111
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.50 E-value=2.5e-05 Score=72.05 Aligned_cols=184 Identities=11% Similarity=0.031 Sum_probs=100.5
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChh---hHH
Q 008633 197 DLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLK-F-DAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVM---TYN 271 (558)
Q Consensus 197 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~---~~~ 271 (558)
....+......+...|++++|...++++.+.... + ...++..+..++.+.|++++|...++++....|.+.. ++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4566677777777788888888888777664321 1 1235566677777777777777777777654443332 344
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 008633 272 IVISGWSKL--------GQVVEMERVLKEIVAEGFSPDS-LTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNA 342 (558)
Q Consensus 272 ~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 342 (558)
.+..++.+. |+.++|.+.|+.+.... |+. ..+..+... .. ... .. ......
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~-~~---~~~------~~--------~~~~~~ 171 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM-DY---LRN------RL--------AGKELY 171 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH-HH---HHH------HH--------HHHHHH
Confidence 444555443 55666666666666542 222 111111100 00 000 00 001123
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 343 VISNYISVGDFDECMKYYKGMSSYN--CEPNMDTYTRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 343 li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
+...|.+.|++++|...+++..+.. .+.....+..+..++.+.|++++|...++.+..
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455666677777776666665542 011234566666666666666666666666554
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.49 E-value=3.4e-05 Score=68.45 Aligned_cols=156 Identities=11% Similarity=0.089 Sum_probs=111.8
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHH
Q 008633 205 MDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVV 284 (558)
Q Consensus 205 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~ 284 (558)
+-.|...|+++.+....+.+.... .-+...++.+++...++......|.|...|..+...|...|+++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~------------~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL------------HQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc------------ccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence 456777788777655543332110 01122556677777777777767778888999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 285 EMERVLKEIVAEGFSPDSLTFSFLIEGL-GRAGR--IDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYK 361 (558)
Q Consensus 285 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 361 (558)
+|...|++..+.. +-+...+..+..++ ...|+ .++|.+++++..+.+.. +..++..+...+.+.|++++|+..|+
T Consensus 91 ~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 91 NALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999998888764 23566677777664 56666 48889999888888665 77788888888888999999999999
Q ss_pred HhhhCCCCCCHHHH
Q 008633 362 GMSSYNCEPNMDTY 375 (558)
Q Consensus 362 ~m~~~~~~p~~~~~ 375 (558)
++.+.. +|+..-+
T Consensus 169 ~aL~l~-~~~~~r~ 181 (198)
T PRK10370 169 KVLDLN-SPRVNRT 181 (198)
T ss_pred HHHhhC-CCCccHH
Confidence 888764 4555443
No 113
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=0.00013 Score=74.23 Aligned_cols=240 Identities=14% Similarity=0.117 Sum_probs=133.0
Q ss_pred CHHHHHHHHH--HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhC-CC--------C
Q 008633 162 DVKSYNVIVK--ALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDF-GL--------K 230 (558)
Q Consensus 162 ~~~~~~~li~--~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~-g~--------~ 230 (558)
|..|-..|++ .|...|+.+.|.+-.+-.+ +...|..+.+.|.+..+++-|.-.+..|... |. .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 3444444443 3456677777766555443 2356667777777766666666555544421 10 1
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008633 231 FDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIE 310 (558)
Q Consensus 231 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 310 (558)
++ ..-..+.-.....|.+++|+.+|.+-+. |..|=..|...|.+++|.++-+.=-.-.+ ..||..-..
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~ 866 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAK 866 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHH
Confidence 11 1111222223455666777777666543 33444555566777777665443211111 134444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 008633 311 GLGRAGRIDDAIEVFDTMKEK----------G---------CGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPN 371 (558)
Q Consensus 311 ~~~~~g~~~~a~~~~~~m~~~----------g---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 371 (558)
-+-..++.+.|++.|++.... . -..|...|.-....+-..|+++.|+.+|....+
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------ 940 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------ 940 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------
Confidence 444455666666655532111 0 011344455555566677788888888776653
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008633 372 MDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKAR 434 (558)
Q Consensus 372 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (558)
|-++++..|-.|+.++|-++-++- -|....-.+.+.|-..|++.+|...|.++.
T Consensus 941 ---~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ---YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ---hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 566777777788888887775542 244445556777778888888888777654
No 114
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.48 E-value=9.1e-05 Score=78.81 Aligned_cols=236 Identities=11% Similarity=0.116 Sum_probs=154.2
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHH
Q 008633 197 DLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFD-AESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVIS 275 (558)
Q Consensus 197 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~ 275 (558)
+...+..|+..+...+++++|.++.+...+.. |+ ...|-.+...+.+.++.+++..+ .++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh----------------hhhh
Confidence 56678888888888888888888888666542 22 22333333355555554444333 3333
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 276 GWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDE 355 (558)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 355 (558)
......++.-...+...|...+ -+...+..+..+|-+.|+.++|..+++++.+.... |+.+.|.+...|... ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHH
Confidence 3444445544444445555432 24457778888888889999999999998888744 788888888888888 8888
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHH
Q 008633 356 CMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTG-TITSFLEPLCSYGPPHAAMMMYKKAR 434 (558)
Q Consensus 356 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (558)
|++++.+.... +...+++.++.+++.++.... |+.. .+-.++ +.+.
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d~f~~i~----------------~ki~ 214 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFDFFLRIE----------------RKVL 214 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccchHHHHHH----------------HHHH
Confidence 88888877642 666778888888888888763 3322 222222 2222
Q ss_pred Hc-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008633 435 KV-GCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLC 488 (558)
Q Consensus 435 ~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 488 (558)
.. +..--..++-.+-..|-..++++++..+++.+.+.. +-|.....-++.+|.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 21 222334555666677888888999999999998875 335556666666665
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.45 E-value=6.7e-05 Score=66.62 Aligned_cols=160 Identities=14% Similarity=0.079 Sum_probs=98.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC
Q 008633 202 SIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLG 281 (558)
Q Consensus 202 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g 281 (558)
...-..+.-.|+-+.+..+....... ...|....+.++....+.|++..|...|++.....|+|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 44455555566666666555554322 23355555566666777777777777777776666667777777777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 282 QVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYK 361 (558)
Q Consensus 282 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 361 (558)
++++|..-|.+..+.. .-+...++.+.-.+.-.|+.+.|..++......+.. |..+-..+.......|++++|.++-.
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 7777777776666542 123345555666666666777777766666655443 44555556666666677776666655
Q ss_pred Hhh
Q 008633 362 GMS 364 (558)
Q Consensus 362 ~m~ 364 (558)
.-.
T Consensus 227 ~e~ 229 (257)
T COG5010 227 QEL 229 (257)
T ss_pred ccc
Confidence 443
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.45 E-value=3.7e-05 Score=70.95 Aligned_cols=189 Identities=9% Similarity=-0.029 Sum_probs=135.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCH--
Q 008633 159 VAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPD---LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDA-- 233 (558)
Q Consensus 159 ~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~---~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-- 233 (558)
.......+-.+...+...|++++|...|++...... .+ ..++..+..++...|++++|+..++++.+.......
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 356778888899999999999999999999987632 12 246778889999999999999999999875432111
Q ss_pred HHHHHHHHHHHhc--------CCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 008633 234 ESLNVVLWCLCQR--------LHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTF 305 (558)
Q Consensus 234 ~~~~~ll~~~~~~--------~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 305 (558)
.++..+..++... |+.+.|.+.|+.+....|-+...+..+..... .... .. ...
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~~------~~--------~~~ 169 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRNR------LA--------GKE 169 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHHH------HH--------HHH
Confidence 2455555666554 77899999999998766655555433322211 0000 00 111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 008633 306 SFLIEGLGRAGRIDDAIEVFDTMKEKGC--GPDTNAYNAVISNYISVGDFDECMKYYKGMSSY 366 (558)
Q Consensus 306 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 366 (558)
..+...+.+.|++.+|...++...+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2455678899999999999999887632 223567888999999999999999999888754
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.44 E-value=7.8e-05 Score=66.22 Aligned_cols=164 Identities=13% Similarity=0.059 Sum_probs=135.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008633 232 DAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEG 311 (558)
Q Consensus 232 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 311 (558)
|..+ ..+-..+...|+-+.+..+........+.|....+..+....+.|++.+|...+++..... ++|..+|+.+.-+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHH
Confidence 4444 5566677778888888888887766666677788889999999999999999999988753 6788999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008633 312 LGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADA 391 (558)
Q Consensus 312 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 391 (558)
|.+.|+.++|..-|.+..+.-.. +...++.|.-.|.-.|+.+.|..++......+ .-|...-..+.......|++++|
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHH
Confidence 99999999999999999887544 56678888888999999999999999988764 44777778888888999999999
Q ss_pred HHHHHHHH
Q 008633 392 LEVFEEML 399 (558)
Q Consensus 392 ~~~~~~m~ 399 (558)
.++...-.
T Consensus 222 ~~i~~~e~ 229 (257)
T COG5010 222 EDIAVQEL 229 (257)
T ss_pred Hhhccccc
Confidence 98865543
No 118
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=0.00024 Score=69.27 Aligned_cols=353 Identities=13% Similarity=0.057 Sum_probs=223.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCH
Q 008633 171 KALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFD-AESLNVVLWCLCQRLHV 249 (558)
Q Consensus 171 ~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~~~~ 249 (558)
++....|+++.|+..|.+..... ++|..-|..-..+|+..|++++|++=-.+-++. .|+ ...|+....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 56678899999999999998875 458888999999999999999998877776664 444 46799999999999999
Q ss_pred hHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHH---HHHHHHHHc---CCCCCHHHHHHHHHHHHhc--------
Q 008633 250 GAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEME---RVLKEIVAE---GFSPDSLTFSFLIEGLGRA-------- 315 (558)
Q Consensus 250 ~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~m~~~---g~~p~~~t~~~ll~~~~~~-------- 315 (558)
++|+.-|.+-.+..+.|...++.+..++.......+.. .++..+... ........|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 99999999988888888999999998882111110000 111111110 0001112233333332221
Q ss_pred --CCHHHHHHHHHHH-----HHCC-------CCC----------------------CHHHHHHHHHHHHhcCCHHHHHHH
Q 008633 316 --GRIDDAIEVFDTM-----KEKG-------CGP----------------------DTNAYNAVISNYISVGDFDECMKY 359 (558)
Q Consensus 316 --g~~~~a~~~~~~m-----~~~g-------~~p----------------------~~~~~~~li~~~~~~g~~~~A~~~ 359 (558)
.++..+...+... ...| ..| -..-...+.++..+..+++.|.+-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 1111222111110 0001 111 012345567777788888888888
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHhcCChhHHHHHHHH
Q 008633 360 YKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTIT-------SFLEPLCSYGPPHAAMMMYKK 432 (558)
Q Consensus 360 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-------~ll~~~~~~g~~~~a~~~~~~ 432 (558)
+....+.. -+..-++....+|...|.+.+....-....+.|... ..-|+ .+..++.+.++++.|+..|.+
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-RADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 88887653 444555666677888887777776666655554211 11122 233355566778888888887
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC
Q 008633 433 ARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDG-EIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS 511 (558)
Q Consensus 433 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 511 (558)
.......|+. ..+....++++.......-. .|.. .-...-...+.+.|++..|+..|.+++.+. +-|
T Consensus 324 aLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~D 391 (539)
T KOG0548|consen 324 ALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PED 391 (539)
T ss_pred HhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cch
Confidence 6665444332 22223344444444444332 2222 122233667889999999999999999885 455
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 512 RLVYSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
...|....-+|.+.|.+.+|..-.+...+.
T Consensus 392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 392 ARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 889999999999999999999987777654
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.42 E-value=6.3e-05 Score=66.77 Aligned_cols=119 Identities=9% Similarity=0.071 Sum_probs=72.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HcCCC--hhHH
Q 008633 385 SRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRL-SGFGK--CGML 461 (558)
Q Consensus 385 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A 461 (558)
.++.+++...++...+.+ +.+...|..+...|...|+++.|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666655543 3455566666666666677777777776666654 33555555555543 45555 3666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 462 LDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 462 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
.+++++..+.+ +-+...+..+...+...|++++|+..|+++++.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66776666654 335556666666666667777777777766654
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.42 E-value=0.00025 Score=75.61 Aligned_cols=240 Identities=13% Similarity=0.153 Sum_probs=155.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDL-ETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNV 238 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~-~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 238 (558)
+.+...|..|+..+...+++++|.++++...+. .|+. ..|-.+...+.+.++.+.+..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 446678899999998999999999999876665 3433 3333333366666665555444 2
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 008633 239 VLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRI 318 (558)
Q Consensus 239 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 318 (558)
++.......++..+..+...|.. .+-+..++-.+..+|-+.|+.++|..+|+++.+.. +-|....|.+...|... ++
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 22333333444333333333332 33356678888999999999999999999998876 44678888888888888 89
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 319 DDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEM 398 (558)
Q Consensus 319 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (558)
++|.+++.+.... |...+++.++.++|.++.... +-+...+-.+.+.....-
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~~------------ 217 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGHR------------ 217 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhhh------------
Confidence 9998888776554 666778889999999888753 222223333332222221
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008633 399 LDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLS 453 (558)
Q Consensus 399 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 453 (558)
|..--..++-.+-..|-..++++++..+++.+.+... -|.....-++.+|.
T Consensus 218 ---~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 ---EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred ---ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC-cchhhHHHHHHHHH
Confidence 1112233444555567777889999999999888653 34455555665554
No 121
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.0009 Score=59.63 Aligned_cols=118 Identities=19% Similarity=0.204 Sum_probs=57.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----
Q 008633 309 IEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLK---- 384 (558)
Q Consensus 309 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---- 384 (558)
...|++.|++++|++..+... +......=+..+.+..+++-|.+.+++|.+- -+..|.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhcc
Confidence 344555555665555554411 1122222233344555555566666655542 234444545544443
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 008633 385 SRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKV 436 (558)
Q Consensus 385 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (558)
.+.+.+|.-+|++|-++ ..|+..+.+....++...|++++|..+++.+...
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 23455555555555443 3455555555555555555555555555555543
No 122
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=0.0011 Score=67.77 Aligned_cols=331 Identities=15% Similarity=0.117 Sum_probs=200.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CC--------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKE-GV--------NPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKF 231 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~-g~--------~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~ 231 (558)
.+-..|..|.+.|.+.++.+-|.-.+-.|... |. .++ .+=..+.-.....|.+++|..+|.+.++.
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---- 829 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---- 829 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH----
Confidence 35578999999999999988887777777532 21 122 33334444456789999999999988764
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH----------HHcC----
Q 008633 232 DAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEI----------VAEG---- 297 (558)
Q Consensus 232 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----------~~~g---- 297 (558)
..|=..|-..|.+++|.++-+.-.. +. =..||..-..-+-..++.+.|++.|++. ....
T Consensus 830 -----DLlNKlyQs~g~w~eA~eiAE~~DR-iH-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 830 -----DLLNKLYQSQGMWSEAFEIAETKDR-IH-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred -----HHHHHHHHhcccHHHHHHHHhhccc-ee-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 3344567778999999998765432 11 2346666667777778888888877643 2211
Q ss_pred -----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH
Q 008633 298 -----FSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNM 372 (558)
Q Consensus 298 -----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 372 (558)
-..|...|.--...+-..|+++.|+.+|..... |-++++..|-.|+.++|-++-++-. |.
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~ 967 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DK 967 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cH
Confidence 011333334444444556777777777766543 4567777788899999988877643 55
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------------cCChhHHHHHHHHHHHcC
Q 008633 373 DTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCS---------------YGPPHAAMMMYKKARKVG 437 (558)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~---------------~g~~~~a~~~~~~~~~~~ 437 (558)
...-.|.+.|-..|++.+|...|.+... |...|+.|-. ..+.-.|-++|++. |
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g 1035 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---G 1035 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---c
Confidence 5666788888888999999888876542 2222322111 11222233333322 2
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHH--------HHH--CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh--
Q 008633 438 CKLSLTAYKLLLRRLSGFGKCGMLLDLWHE--------MQE--SGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLR-- 505 (558)
Q Consensus 438 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------m~~--~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 505 (558)
.. ....+..|.++|.+.+|+++--+ ++. ..-..|+...+.-...++...++++|..++-...+
T Consensus 1036 ~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~ 1110 (1416)
T KOG3617|consen 1036 GY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFS 1110 (1416)
T ss_pred hh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 11 12233457778888777654311 122 22234556666666666666666666655543321
Q ss_pred --------CC----------------CCCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 008633 506 --------KG----------------FCPS----RLVYSKLSNKLLASNKLESAYNLF 535 (558)
Q Consensus 506 --------~g----------------~~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 535 (558)
+| -.|+ ..+...+.+.|.+.|.+..|.+-|
T Consensus 1111 ~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1111 GALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKF 1168 (1416)
T ss_pred HHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 11 1233 345667778888999887776544
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.38 E-value=0.00017 Score=76.00 Aligned_cols=163 Identities=9% Similarity=0.061 Sum_probs=128.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008633 229 LKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFL 308 (558)
Q Consensus 229 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 308 (558)
+..++..+-.|.....+.|..++|..+++...+..|.+......++..+.+.+++++|+...++..... +-+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 455788888999999999999999999999988888888899999999999999999999999998864 2245667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCH
Q 008633 309 IEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKV 388 (558)
Q Consensus 309 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 388 (558)
..++.+.|++++|..+|+++...+.. +..++..+..++.+.|+.++|...|++..+.. .+....|+..+. +.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HH
Confidence 78888999999999999999985433 57788889999999999999999999988653 344555554443 33
Q ss_pred HHHHHHHHHHHH
Q 008633 389 ADALEVFEEMLD 400 (558)
Q Consensus 389 ~~A~~~~~~m~~ 400 (558)
..-...++++.-
T Consensus 233 ~~~~~~~~~~~~ 244 (694)
T PRK15179 233 NADLAALRRLGV 244 (694)
T ss_pred HHHHHHHHHcCc
Confidence 334445555543
No 124
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.37 E-value=6.8e-06 Score=68.94 Aligned_cols=90 Identities=8% Similarity=-0.129 Sum_probs=47.3
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 448 LLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNK 527 (558)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 527 (558)
+...+...|++++|...|+...... +.+...|..+..++...|++++|+..|+++.+.. +.+...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3444555555555555555555443 3344455555555555555555555555555432 2234555555555555555
Q ss_pred HHHHHHHHHHHH
Q 008633 528 LESAYNLFRKIK 539 (558)
Q Consensus 528 ~~~A~~~~~~m~ 539 (558)
+++|...+++..
T Consensus 108 ~~eAi~~~~~Al 119 (144)
T PRK15359 108 PGLAREAFQTAI 119 (144)
T ss_pred HHHHHHHHHHHH
Confidence 555555555554
No 125
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.36 E-value=0.0034 Score=61.57 Aligned_cols=353 Identities=14% Similarity=0.124 Sum_probs=209.4
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHH
Q 008633 195 NPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVI 274 (558)
Q Consensus 195 ~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li 274 (558)
+-|..+|..||+-+... ..+++.+.++++... ++-....|..-|..-.+.++++..+.+|.+-..++- +...|..-+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhHHHHHH
Confidence 55899999999987665 999999999999864 345678899999999999999999999998754432 677887777
Q ss_pred HHHHhc-CCHHH----HHHHHHHH-HHcCCCCCH-HHHHHHH---HH------HHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 008633 275 SGWSKL-GQVVE----MERVLKEI-VAEGFSPDS-LTFSFLI---EG------LGRAGRIDDAIEVFDTMKEKGCGPDTN 338 (558)
Q Consensus 275 ~~~~~~-g~~~~----A~~~~~~m-~~~g~~p~~-~t~~~ll---~~------~~~~g~~~~a~~~~~~m~~~g~~p~~~ 338 (558)
.--.+. |+... ..+.|+-. .+.|+.+-. ..|+..+ .. +....+++...+++.++...-+.-=..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 655443 22222 23334433 334544332 2233333 32 334446677888888888763321111
Q ss_pred H------HHHHHHHH-------HhcCCHHHHHHHHHHhhh--CCCCCCHH---------------HHHHHHH--------
Q 008633 339 A------YNAVISNY-------ISVGDFDECMKYYKGMSS--YNCEPNMD---------------TYTRLIS-------- 380 (558)
Q Consensus 339 ~------~~~li~~~-------~~~g~~~~A~~~~~~m~~--~~~~p~~~---------------~~~~li~-------- 380 (558)
. |..=|+.. -+...+..|.++++++.. .|...+.. .|-.+|.
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 2 21111111 122245556666665532 22111111 1211111
Q ss_pred -----------------------------------------HHHhcCC-------HHHHHHHHHHHHHCCCCCCHHHHHH
Q 008633 381 -----------------------------------------GLLKSRK-------VADALEVFEEMLDRGIVPSTGTITS 412 (558)
Q Consensus 381 -----------------------------------------~~~~~g~-------~~~A~~~~~~m~~~~~~p~~~~~~~ 412 (558)
.+...|+ -+++..+++..+..-..-+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111122 2333344443333222222233333
Q ss_pred HHHHHHhcC---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 008633 413 FLEPLCSYG---PPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPS-DGEIYEYVIAGLC 488 (558)
Q Consensus 413 ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~ 488 (558)
+.+---..- ..+.....++++......--.-+|..+|+...+...+..|..+|.+..+.+..+ ++.++++++..+|
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC 413 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh
Confidence 222111111 234444555555543222233567778888888888999999999999887777 6777888888666
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchh-hhhhc
Q 008633 489 NIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQNDYA-RRLWR 552 (558)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~ 552 (558)
.++.+-|.++|+--+++ +.-++.--...++-+...|+-..|..+|++....++.++. ..+|+
T Consensus 414 -skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~ 476 (656)
T KOG1914|consen 414 -SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWD 476 (656)
T ss_pred -cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHH
Confidence 46788999999987765 2233455567788888999999999999999988666443 46664
No 126
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.35 E-value=0.00024 Score=74.10 Aligned_cols=161 Identities=9% Similarity=0.014 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHH
Q 008633 165 SYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGL-KFDAESLNVVLWCL 243 (558)
Q Consensus 165 ~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~ll~~~ 243 (558)
.|..|...|+...+...|...|+..-+.. ..|......+.+.|++..+++.|..+.-..-+... ..-..-|..+.-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 34444444444444445555555544432 12444555555555555555555555222111100 00011122223334
Q ss_pred HhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHhcCCHHHH
Q 008633 244 CQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFL--IEGLGRAGRIDDA 321 (558)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--l~~~~~~g~~~~a 321 (558)
.+.++...|..-|+......|-|...|..++.+|...|++..|.++|.+.... .|+. +|... .-..+..|++.+|
T Consensus 573 Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHH
Confidence 44555555555555554444456666666666666666666666666655442 2322 22211 1223445666666
Q ss_pred HHHHHHHH
Q 008633 322 IEVFDTMK 329 (558)
Q Consensus 322 ~~~~~~m~ 329 (558)
...+....
T Consensus 650 ld~l~~ii 657 (1238)
T KOG1127|consen 650 LDALGLII 657 (1238)
T ss_pred HHHHHHHH
Confidence 66655544
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=0.00064 Score=65.84 Aligned_cols=138 Identities=15% Similarity=0.153 Sum_probs=83.0
Q ss_pred HHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 008633 243 LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD-SLTFSFLIEGLGRAGRIDDA 321 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a 321 (558)
+...|+.+.|+..++.+....|-|...+......+.+.++.++|.+.++++... .|+ ......+..++.+.|+..+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 334566666666666666656666666666666666666666666666666654 344 33444555666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 322 IEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDR 401 (558)
Q Consensus 322 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (558)
..+++........ |+..|..|..+|...|+..+|..-.- .+|...|++++|+..+....+.
T Consensus 394 i~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 394 IRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 6666666555333 56666666666666666665544333 2334456666666666655543
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.32 E-value=0.00039 Score=73.36 Aligned_cols=198 Identities=9% Similarity=0.049 Sum_probs=151.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 008633 178 FFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFN 257 (558)
Q Consensus 178 ~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~ 257 (558)
...+++.-+....+. ...++..+..|.....+.|..++|..+++.+.+.. +-+......+...+.+.+++++|+..++
T Consensus 67 ~~~~~~~~~~~~~~~-~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~ 144 (694)
T PRK15179 67 KPAAALPELLDYVRR-YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIE 144 (694)
T ss_pred chHhhHHHHHHHHHh-ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 333333333333333 45578999999999999999999999999999864 2256778889999999999999999999
Q ss_pred HhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 008633 258 SMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDT 337 (558)
Q Consensus 258 ~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 337 (558)
+.....|-+....+.+..++.+.|++++|..+|++....+ .-+..++..+..++...|+.++|...|+...+.- .+..
T Consensus 145 ~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~ 222 (694)
T PRK15179 145 LYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGA 222 (694)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-Ccch
Confidence 9998888899999999999999999999999999999843 3347889999999999999999999999998763 2344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCC----CCCCHHHHHHHHHHHHhc
Q 008633 338 NAYNAVISNYISVGDFDECMKYYKGMSSYN----CEPNMDTYTRLISGLLKS 385 (558)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~~~~~li~~~~~~ 385 (558)
..|+..+ +++..-..+++++.-.+ ....+.+...+|.-|.+.
T Consensus 223 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 223 RKLTRRL------VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHH------HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 5555443 33444556666665433 333445556666666554
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00094 Score=59.51 Aligned_cols=174 Identities=14% Similarity=0.116 Sum_probs=123.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 322 IEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDR 401 (558)
Q Consensus 322 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (558)
.++.+.+.......+......-...|+..|++++|++...... +......=+..+.+..+++-|...+++|.+-
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3444555544444344444445567889999999999988732 3444555566778888999999999999874
Q ss_pred CCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH
Q 008633 402 GIVPSTGTITSFLEPLCS----YGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDG 477 (558)
Q Consensus 402 ~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 477 (558)
-+..|.+.|..++.+ .+.+..|.-+|+++.+. ..|+..+.+....++...|++++|..++++..... .-+.
T Consensus 167 ---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dp 241 (299)
T KOG3081|consen 167 ---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDP 241 (299)
T ss_pred ---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCH
Confidence 356777777777765 34677888888888763 46888888888888888999999999999888765 3467
Q ss_pred HHHHHHHHHHHhcCCHhHH-HHHHHHHHhC
Q 008633 478 EIYEYVIAGLCNIGQLENA-VLVMEESLRK 506 (558)
Q Consensus 478 ~~~~~li~~~~~~g~~~~A-~~~~~~m~~~ 506 (558)
.+...+|..-...|...++ .+.+.++...
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 7777777776667765443 4555555543
No 130
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.23 E-value=0.0072 Score=62.91 Aligned_cols=223 Identities=14% Similarity=0.065 Sum_probs=112.5
Q ss_pred HHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 008633 209 IRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWC--LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEM 286 (558)
Q Consensus 209 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~--~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A 286 (558)
...+++.+|.+....+.+.- |+. .|..++.+ +.+.|+.++|..+++......+.|..|...+-.+|...|+.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 35567777777777666432 232 12222222 34567777777777766554444667777777777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------CHHHH
Q 008633 287 ERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVG----------DFDEC 356 (558)
Q Consensus 287 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----------~~~~A 356 (558)
..+|++.... -|+......+..+|.+.+.+.+-.++--+|-+. .+-+...+=++++.+...- -..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 7777776654 355666666666677666665544333333332 2223333334444443321 12334
Q ss_pred HHHHHHhhhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008633 357 MKYYKGMSSYNCE-PNMDTYTRLISGLLKSRKVADALEVFE-EMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKAR 434 (558)
Q Consensus 357 ~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (558)
.+.++.+.+.+.+ -+..-...-...+-..|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 4455555443211 111111111222334556666666662 23232222233333344444555566666666666655
Q ss_pred HcC
Q 008633 435 KVG 437 (558)
Q Consensus 435 ~~~ 437 (558)
..+
T Consensus 254 ~k~ 256 (932)
T KOG2053|consen 254 EKG 256 (932)
T ss_pred HhC
Confidence 544
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.23 E-value=0.00094 Score=64.71 Aligned_cols=137 Identities=13% Similarity=0.144 Sum_probs=76.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 008633 312 LGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPN-MDTYTRLISGLLKSRKVAD 390 (558)
Q Consensus 312 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~ 390 (558)
+...|++++|+..++.+.+.-. -|+.......+.+.+.++.++|.+.++++... .|+ ...+-.+..+|.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 3345666666666666555422 24445555556666666666666666666554 343 3444455566666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 008633 391 ALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQE 470 (558)
Q Consensus 391 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 470 (558)
|+.++++..... +-|...|..|..+|...|+..++.....+. |...|+++.|...+....+
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHH
Confidence 666666655542 445556666666666666655554443322 3344556666655555554
No 132
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.22 E-value=0.0012 Score=69.15 Aligned_cols=373 Identities=11% Similarity=0.002 Sum_probs=213.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEG-VNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVV 239 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g-~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 239 (558)
-+..++....+.|++..++++|..+.-..-+.. ...-...|....-.|.+.++...|+.-|+...+..+ -|...|..+
T Consensus 524 tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gL 602 (1238)
T KOG1127|consen 524 TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGL 602 (1238)
T ss_pred hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHH
Confidence 467889999999999999999999843332221 011122344455567788999999999999988753 388899999
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHH
Q 008633 240 LWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE------GFSPDSLTFSFLIEGLG 313 (558)
Q Consensus 240 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~ 313 (558)
..+|.++|++..|.++|.+...-.|.+...---..-.-+..|++.+|+..+...... +..--..++..+...+.
T Consensus 603 GeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~ 682 (1238)
T KOG1127|consen 603 GEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSA 682 (1238)
T ss_pred HHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 999999999999999999887654444444444555667889999999988877653 11122334444444444
Q ss_pred hcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcCCHH------HHHHHHH-HhhhCCC-----------
Q 008633 314 RAGRIDDAIEVFDTMKE-------KGCGPDTNAYNAVISNYISVGDFD------ECMKYYK-GMSSYNC----------- 368 (558)
Q Consensus 314 ~~g~~~~a~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g~~~------~A~~~~~-~m~~~~~----------- 368 (558)
-.|-..++..+++.-++ .....+...|-.+-++|.-.-..+ ....++. +....+.
T Consensus 683 ~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~ 762 (1238)
T KOG1127|consen 683 ITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGY 762 (1238)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHH
Confidence 44444444444443322 221223333332222221110000 0000010 1111111
Q ss_pred ---------CCCHHHHHHHHHHHHh----c----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 008633 369 ---------EPNMDTYTRLISGLLK----S----RKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYK 431 (558)
Q Consensus 369 ---------~p~~~~~~~li~~~~~----~----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 431 (558)
..+..+|..++..|.+ . .+...|+..+++.++.. .-+..+++.|. .....|.+.-|...|-
T Consensus 763 ~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLG-Vlsg~gnva~aQHCfI 840 (1238)
T KOG1127|consen 763 ECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALG-VLSGIGNVACAQHCFI 840 (1238)
T ss_pred HHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHH-Hhhccchhhhhhhhhh
Confidence 1123334444444333 1 12345667776666542 23444555544 3444466666655554
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh----CC
Q 008633 432 KARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLR----KG 507 (558)
Q Consensus 432 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g 507 (558)
+-.... +....+|..+.-.+.+..+++.|...|...+... +.|...|--........|+.-++..+|..-.+ .|
T Consensus 841 ks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~g 918 (1238)
T KOG1127|consen 841 KSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEG 918 (1238)
T ss_pred hhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhcccc
Confidence 444332 3455667777667778888888888888877654 44555665555555566777777777765221 23
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 508 FCPSRLVYSKLSNKLLASNKLESAYNLFRKI 538 (558)
Q Consensus 508 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 538 (558)
-.|+..-|......-...|+.++-+.-.+++
T Consensus 919 ka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 919 KAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred ccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 3455444555555555666666555544444
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=0.0016 Score=57.69 Aligned_cols=163 Identities=15% Similarity=0.140 Sum_probs=81.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008633 236 LNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRA 315 (558)
Q Consensus 236 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 315 (558)
|..++-+....|+.+.|...++++..+.|-+...-..-.-.+-..|++++|+++++.+.+.. +.|.++|.--+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 34444455555556666666655555443333222222222334466666666666666554 33445555444444445
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC---CHHHHH
Q 008633 316 GRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSR---KVADAL 392 (558)
Q Consensus 316 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~ 392 (558)
|+--+|++-+.+..+. +.-|...|.-+...|...|++++|.-.++++.-.. +-+...+..+...+...| +.+-|.
T Consensus 134 GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5555555555555544 33366666666666666666666666666665432 222333333333333222 344455
Q ss_pred HHHHHHHHC
Q 008633 393 EVFEEMLDR 401 (558)
Q Consensus 393 ~~~~~m~~~ 401 (558)
+.|.+..+.
T Consensus 212 kyy~~alkl 220 (289)
T KOG3060|consen 212 KYYERALKL 220 (289)
T ss_pred HHHHHHHHh
Confidence 555555543
No 134
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.17 E-value=0.014 Score=60.91 Aligned_cols=195 Identities=15% Similarity=0.114 Sum_probs=130.8
Q ss_pred HHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008633 166 YNVIVKAL--GRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCL 243 (558)
Q Consensus 166 ~~~li~~~--~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~ 243 (558)
|...+.++ .+.|+.++|..+++.....+.. |..|...+-..|-..|+.++|..+|++.... .|+..-...+..+|
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmay 120 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAY 120 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHH
Confidence 44555554 5789999999888888776644 8889999999999999999999999998865 45677788888888
Q ss_pred HhcCCHhH----HHHHHHHhhcCCCCChhhHHHHHHHHHhcC----------CHHHHHHHHHHHHHcC-CCCCHHHHHHH
Q 008633 244 CQRLHVGA----ASSLFNSMKGKVLFNVMTYNIVISGWSKLG----------QVVEMERVLKEIVAEG-FSPDSLTFSFL 308 (558)
Q Consensus 244 ~~~~~~~~----A~~~~~~m~~~~~~~~~~~~~li~~~~~~g----------~~~~A~~~~~~m~~~g-~~p~~~t~~~l 308 (558)
++.+.+.+ |.+++... |-+...+=.+++.+...- -..-|.+.++.+.+.+ ..-+..-...-
T Consensus 121 vR~~~yk~qQkaa~~LyK~~----pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Ly 196 (932)
T KOG2053|consen 121 VREKSYKKQQKAALQLYKNF----PKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILY 196 (932)
T ss_pred HHHHHHHHHHHHHHHHHHhC----CcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHH
Confidence 88887765 44555433 334444444444443321 1234556666666554 21122222223
Q ss_pred HHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 008633 309 IEGLGRAGRIDDAIEVF-DTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYN 367 (558)
Q Consensus 309 l~~~~~~g~~~~a~~~~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 367 (558)
...+-..|++++|.+++ ....+.-..-+...-+--++.+...+++.+..++-.++...|
T Consensus 197 l~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 197 LLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 34455678899999888 344444344455555667788888899999888888888775
No 135
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.17 E-value=9.8e-05 Score=61.93 Aligned_cols=50 Identities=10% Similarity=-0.005 Sum_probs=18.6
Q ss_pred hcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 245 QRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIV 294 (558)
Q Consensus 245 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 294 (558)
..|++++|...|+......|.+...|..+..++.+.|++++|...|+...
T Consensus 36 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 36 QEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.0035 Score=55.57 Aligned_cols=188 Identities=13% Similarity=0.085 Sum_probs=136.4
Q ss_pred CChHHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhH
Q 008633 177 KFFDFMCNVLSDMAKE---G-VNPDLE-TLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGA 251 (558)
Q Consensus 177 ~~~~~a~~l~~~m~~~---g-~~~~~~-t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~ 251 (558)
.+.++.++++.+|... | ..++.. .|..++-+....|+.+.|...++.+...- +-+..+-..-...+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 4566777777776532 3 445544 45667777778899999999998887542 3333333333334556788999
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 252 ASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEK 331 (558)
Q Consensus 252 A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 331 (558)
|.++++.+.+..|.|.++|---+...-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-.
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 999999998888888888887777777788888888888887765 5668899999999999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCC
Q 008633 332 GCGPDTNAYNAVISNYISVG---DFDECMKYYKGMSSYN 367 (558)
Q Consensus 332 g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~ 367 (558)
.+. +...+..+.+.+.-.| +++-|.++|.+..+..
T Consensus 184 ~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 184 QPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred CCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 332 5555566666554444 5777888888888653
No 137
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=5.4e-06 Score=50.35 Aligned_cols=33 Identities=42% Similarity=0.740 Sum_probs=23.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD 301 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 301 (558)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777665
No 138
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.08 E-value=6.2e-06 Score=50.06 Aligned_cols=33 Identities=21% Similarity=0.522 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 008633 165 SYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPD 197 (558)
Q Consensus 165 ~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~ 197 (558)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888876
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.06 E-value=0.00027 Score=58.70 Aligned_cols=92 Identities=12% Similarity=0.096 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008633 271 NIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISV 350 (558)
Q Consensus 271 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 350 (558)
..+...+...|++++|...++.....+ +.+...+..+...+.+.|++++|..+++...+.+.. +...+..+...|...
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHc
Confidence 333333444444444444444433322 112333333333344444444444444433333211 233333333444444
Q ss_pred CCHHHHHHHHHHhh
Q 008633 351 GDFDECMKYYKGMS 364 (558)
Q Consensus 351 g~~~~A~~~~~~m~ 364 (558)
|++++|.+.|+...
T Consensus 99 g~~~~A~~~~~~al 112 (135)
T TIGR02552 99 GEPESALKALDLAI 112 (135)
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444433
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.05 E-value=6.6e-06 Score=49.60 Aligned_cols=33 Identities=24% Similarity=0.489 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 008633 164 KSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNP 196 (558)
Q Consensus 164 ~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~ 196 (558)
.+||.+|.+|++.|+++.|+++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.04 E-value=0.00013 Score=71.09 Aligned_cols=123 Identities=15% Similarity=0.150 Sum_probs=92.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008633 168 VIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRL 247 (558)
Q Consensus 168 ~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~ 247 (558)
.|+..+...++++.|..+|+++.+.. |+ ....+++.+...++-.+|++++++..+.. +.+...+..-...|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34445556788888888888888764 44 34457777777888888888888887543 336666777777788888
Q ss_pred CHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 248 HVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVA 295 (558)
Q Consensus 248 ~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (558)
+.+.|+++.+++....|.+..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 888888888888877777777888888888888888888887776643
No 142
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.03 E-value=0.018 Score=58.21 Aligned_cols=122 Identities=7% Similarity=-0.060 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC--------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKE-GVNP--------DLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLK 230 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~-g~~~--------~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 230 (558)
.|....|..+.......-.++-|...|-+...- |++. +...-.+=+. +--|++++|.++|-+|.++.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhhh-
Confidence 367788999988888777777777777665432 3321 0111111122 234889999999987776532
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 231 FDAESLNVVLWCLCQRLHVGAASSLFNSMKGK--VLFNVMTYNIVISGWSKLGQVVEMERVLKE 292 (558)
Q Consensus 231 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 292 (558)
.|..+.+.|++-.+.++++.-... ...-...|+.+...++....|++|.+.|..
T Consensus 766 --------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666777777776666543221 111234566666666666666666665543
No 143
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.00 E-value=1.1e-05 Score=48.51 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008633 268 MTYNIVISGWSKLGQVVEMERVLKEIVAEGFSP 300 (558)
Q Consensus 268 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 300 (558)
.+||+++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456666666666666666666666666666555
No 144
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.00 E-value=0.00035 Score=58.01 Aligned_cols=97 Identities=10% Similarity=0.072 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 008633 199 ETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWS 278 (558)
Q Consensus 199 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~ 278 (558)
.....+...+...|+.++|.+.++.+...+ +.+...+..+..++.+.|++++|...+++.....+.+...+..+...+.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 334444555555566666666666555543 2244555555555555666666666665554444445555555666666
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 008633 279 KLGQVVEMERVLKEIVAE 296 (558)
Q Consensus 279 ~~g~~~~A~~~~~~m~~~ 296 (558)
..|++++|...|+...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666655553
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.93 E-value=0.00049 Score=67.16 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=54.3
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 008633 240 LWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRID 319 (558)
Q Consensus 240 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 319 (558)
+..+...++++.|.++|+++.... ......++..+...++-.+|.+++.+..+.. +-+...+..-...+.+.++.+
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~---pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERD---PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcC---CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHH
Confidence 333334445555555555554432 1223334444444455555555555544331 123333333444444555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 008633 320 DAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMS 364 (558)
Q Consensus 320 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 364 (558)
.|.++.+++.+..+. +-.+|..|..+|.+.|+++.|+..++.+.
T Consensus 252 lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 252 LALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 555555555444221 33345555555555555555555554443
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.93 E-value=0.00086 Score=56.42 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=10.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 008633 275 SGWSKLGQVVEMERVLKEIVAE 296 (558)
Q Consensus 275 ~~~~~~g~~~~A~~~~~~m~~~ 296 (558)
..+...|++++|...|+.....
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~ 77 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALAN 77 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhh
Confidence 4444444444444444444443
No 147
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.92 E-value=0.0002 Score=70.11 Aligned_cols=124 Identities=17% Similarity=0.166 Sum_probs=81.0
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 008633 262 KVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE--GFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNA 339 (558)
Q Consensus 262 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 339 (558)
..+.+......+++.+....+++++..++.+.... ....-..|..++++.|.+.|..+++++++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556666666777776666777777777766654 2212233445777777777777777777777777777777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc
Q 008633 340 YNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKS 385 (558)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 385 (558)
+|.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777776665555556665555555544
No 148
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.90 E-value=0.00022 Score=69.91 Aligned_cols=120 Identities=8% Similarity=0.042 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 008633 370 PNMDTYTRLISGLLKSRKVADALEVFEEMLDR--GIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKL 447 (558)
Q Consensus 370 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 447 (558)
.+......+++.+....+++++..++.+.... ....-..|..++++.|...|..+.++.+++.=...|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34444444444444444455555555444433 1111122333455555555555555555554444555555555555
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008633 448 LLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCN 489 (558)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 489 (558)
||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 555555555555555555444443333344444444444333
No 149
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.89 E-value=6.8e-05 Score=67.92 Aligned_cols=100 Identities=22% Similarity=0.220 Sum_probs=62.6
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 008633 452 LSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLES 530 (558)
Q Consensus 452 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 530 (558)
+.+.+++++|+..|.+.++.. +-|.+.|..-..+|++.|.++.|++-.+..+.. .|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 445566666666666666653 335555556666666777777776666666643 344 4666667777777777777
Q ss_pred HHHHHHHHHHhcCCchhhhhhcccCC
Q 008633 531 AYNLFRKIKIARQNDYARRLWRSKGW 556 (558)
Q Consensus 531 A~~~~~~m~~~~~~~~~~~~~~~~gw 556 (558)
|.+.|++.. .+.|+...||.+++|
T Consensus 168 A~~aykKaL--eldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 168 AIEAYKKAL--ELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHhhh--ccCCCcHHHHHHHHH
Confidence 776666665 466666666655543
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.82 E-value=0.0012 Score=55.43 Aligned_cols=126 Identities=11% Similarity=0.009 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCH--HHHHH
Q 008633 164 KSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPD---LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDA--ESLNV 238 (558)
Q Consensus 164 ~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~---~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~ 238 (558)
..|..++..+ ..++...+...++.+..... .+ ....-.+...+...|++++|...|+.+......++. .....
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 3455666665 37777777777777776532 12 223334556677778888888888887776522221 23444
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 239 VLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKE 292 (558)
Q Consensus 239 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 292 (558)
|...+...|++++|+..++.... .+.....+....+.+.+.|++++|...|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 56667777777777777766432 223444566677777777777777777764
No 151
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.77 E-value=0.00043 Score=53.14 Aligned_cols=75 Identities=19% Similarity=0.419 Sum_probs=39.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008633 344 ISNYISVGDFDECMKYYKGMSSYNC-EPNMDTYTRLISGLLKSR--------KVADALEVFEEMLDRGIVPSTGTITSFL 414 (558)
Q Consensus 344 i~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~~ll 414 (558)
|.-+...+++.....+|+.++..|+ .|++.+|+.++.+.++.. +.-+.+.+|++|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555555 555555555555544431 2334455566666666666666666666
Q ss_pred HHHH
Q 008633 415 EPLC 418 (558)
Q Consensus 415 ~~~~ 418 (558)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5443
No 152
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.76 E-value=3.7e-05 Score=45.08 Aligned_cols=29 Identities=45% Similarity=0.714 Sum_probs=18.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKEIVAEG 297 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 297 (558)
+||+++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
No 153
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.75 E-value=0.00061 Score=52.32 Aligned_cols=74 Identities=20% Similarity=0.347 Sum_probs=38.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 008633 311 GLGRAGRIDDAIEVFDTMKEKGC-GPDTNAYNAVISNYISVG--------DFDECMKYYKGMSSYNCEPNMDTYTRLISG 381 (558)
Q Consensus 311 ~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 381 (558)
.+...+++...-.+|+.+++.|+ .|++.+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.++..
T Consensus 34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~ 113 (120)
T PF08579_consen 34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGS 113 (120)
T ss_pred HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 33333444444444444444444 444444444444444332 233455566666666666666666666666
Q ss_pred HHh
Q 008633 382 LLK 384 (558)
Q Consensus 382 ~~~ 384 (558)
+.+
T Consensus 114 Llk 116 (120)
T PF08579_consen 114 LLK 116 (120)
T ss_pred HHH
Confidence 544
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.73 E-value=3.5e-05 Score=45.18 Aligned_cols=30 Identities=20% Similarity=0.468 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 008633 165 SYNVIVKALGRRKFFDFMCNVLSDMAKEGV 194 (558)
Q Consensus 165 ~~~~li~~~~~~~~~~~a~~l~~~m~~~g~ 194 (558)
+||.+|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777777653
No 155
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.0091 Score=56.76 Aligned_cols=87 Identities=15% Similarity=0.060 Sum_probs=54.6
Q ss_pred HHhcCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcC
Q 008633 417 LCSYGPPHAAMMMYKKARKV---GCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVI--AGLCNIG 491 (558)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li--~~~~~~g 491 (558)
..+.|.+..|.+.|.+.+.. +..++...|........+.|+.++|+.-.++....+ ...+...+. .++...+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---SSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---HHHHHHHHHHHHHHHHHH
Confidence 34567777777777777653 345566667666667777778777777777766542 112222222 3344457
Q ss_pred CHhHHHHHHHHHHhC
Q 008633 492 QLENAVLVMEESLRK 506 (558)
Q Consensus 492 ~~~~A~~~~~~m~~~ 506 (558)
++++|.+-++++.+.
T Consensus 336 ~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777777777777665
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.65 E-value=0.00096 Score=50.79 Aligned_cols=94 Identities=19% Similarity=0.221 Sum_probs=66.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008633 445 YKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLA 524 (558)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 524 (558)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3445556667777888888887776643 3344567777777777888888888888777653 2334577777778888
Q ss_pred cCCHHHHHHHHHHHHH
Q 008633 525 SNKLESAYNLFRKIKI 540 (558)
Q Consensus 525 ~g~~~~A~~~~~~m~~ 540 (558)
.|++++|.+.+.+..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 8888888888777653
No 157
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.63 E-value=0.041 Score=50.62 Aligned_cols=176 Identities=13% Similarity=0.069 Sum_probs=103.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-HH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008633 343 VISNYISVGDFDECMKYYKGMSSYNCEPNM-DT---YTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLC 418 (558)
Q Consensus 343 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 418 (558)
....+.+.|++++|.+.|+++.... |+. .. .-.++.++.+.+++++|...+++..+........-+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 4445566778888888888777642 332 11 13455667777888888888887776532222233333333333
Q ss_pred h--c---------------CCh---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHH
Q 008633 419 S--Y---------------GPP---HAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGE 478 (558)
Q Consensus 419 ~--~---------------g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 478 (558)
. . .+. ..|...++.++ +.|-...-..+|...+..+.+. =..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~~~----la~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLKDR----LAK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHHHH----HHH
Confidence 1 1 111 12333333333 3333333345555444444321 001
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 479 IYEYVIAGLCNIGQLENAVLVMEESLRK--GFCPSRLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
.--.+...|.+.|.+..|+.-++.+++. +.+........++.+|.+.|..++|.+....+.
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1124566688999999999999999986 322336777788899999999999998877664
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.59 E-value=0.0014 Score=49.78 Aligned_cols=54 Identities=13% Similarity=-0.012 Sum_probs=20.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 239 VLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKE 292 (558)
Q Consensus 239 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 292 (558)
+..++...+++++|.+.|+......+.+..++..+...+...|++++|...+..
T Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 40 LAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333333333444444433333322222333333444444444444444444433
No 159
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.59 E-value=0.0017 Score=56.47 Aligned_cols=102 Identities=16% Similarity=0.237 Sum_probs=62.2
Q ss_pred ChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 008633 266 NVMTYNIVISGWSK-----LGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAY 340 (558)
Q Consensus 266 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 340 (558)
+..+|..+++.|.+ .|..+-....+..|.+-|+.-|..+|+.|++.+=+ |.+- |... +
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~-f 108 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNF-F 108 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccH-H
Confidence 66677777777764 36677777777888888888888888888877654 2211 1111 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC
Q 008633 341 NAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSR 386 (558)
Q Consensus 341 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 386 (558)
.++-.-| -.+-+-|++++++|...|+-||..++..+++.+.+.+
T Consensus 109 Q~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 109 QAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 1111111 1234556677777777777777777777777765554
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.55 E-value=0.0027 Score=51.09 Aligned_cols=99 Identities=8% Similarity=-0.057 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHH
Q 008633 166 YNVIVKALGRRKFFDFMCNVLSDMAKEGVN--PDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLK--FDAESLNVVLW 241 (558)
Q Consensus 166 ~~~li~~~~~~~~~~~a~~l~~~m~~~g~~--~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~ll~ 241 (558)
+......+.+.|++++|...|+.+...... .....+..+...+.+.|+++.|.+.++.+...... ....++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444445555555555555555443210 01233444455555555555555555554432111 11233444444
Q ss_pred HHHhcCCHhHHHHHHHHhhcCCC
Q 008633 242 CLCQRLHVGAASSLFNSMKGKVL 264 (558)
Q Consensus 242 ~~~~~~~~~~A~~~~~~m~~~~~ 264 (558)
++.+.|+.++|...++++....|
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCc
Confidence 44444455555554444444333
No 161
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.55 E-value=0.0035 Score=50.46 Aligned_cols=21 Identities=10% Similarity=0.067 Sum_probs=8.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhh
Q 008633 344 ISNYISVGDFDECMKYYKGMS 364 (558)
Q Consensus 344 i~~~~~~g~~~~A~~~~~~m~ 364 (558)
..++.+.|+.++|.+.++++.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHH
Confidence 333333344444444444333
No 162
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.53 E-value=0.0071 Score=61.97 Aligned_cols=63 Identities=16% Similarity=0.112 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 477 GEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
...|..+.-.....|++++|...++++++.+ |+...|..+...+...|+.++|.+.+++....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445444444444555555555555555442 45555555555555555555555555555533
No 163
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.49 E-value=0.0023 Score=60.38 Aligned_cols=129 Identities=13% Similarity=0.032 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008633 165 SYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIR-AGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCL 243 (558)
Q Consensus 165 ~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~ 243 (558)
+|-.+++..-+.+..+.|..+|.+..+.+ ..+...|......-.+ .++.+.|..+|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34445555555555555555555554332 1122222222222112 23444455555555443 233444555555555
Q ss_pred HhcCCHhHHHHHHHHhhcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 244 CQRLHVGAASSLFNSMKGKVLFNV---MTYNIVISGWSKLGQVVEMERVLKEIVA 295 (558)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (558)
.+.++.+.|..+|++.....+++. ..|...+..=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555544433222 2444455544455555555555444444
No 164
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.48 E-value=0.0011 Score=57.61 Aligned_cols=89 Identities=20% Similarity=0.235 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 008633 212 GQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLK 291 (558)
Q Consensus 212 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 291 (558)
|.++-....+..|.+.|+.-|..+|+.|++++=+ |.+- -..+|+.+-.+. -.+-+-|+++++
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~hy----------------p~Qq~c~i~lL~ 127 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMHY----------------PRQQECAIDLLE 127 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhccC----------------cHHHHHHHHHHH
Confidence 5666666677778888888888888888877654 2221 122333322221 135677899999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 008633 292 EIVAEGFSPDSLTFSFLIEGLGRAGRI 318 (558)
Q Consensus 292 ~m~~~g~~p~~~t~~~ll~~~~~~g~~ 318 (558)
+|...|+-||..|+..+++.+++.+..
T Consensus 128 qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 128 QMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 999999999999999999999887653
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.48 E-value=0.012 Score=55.66 Aligned_cols=143 Identities=13% Similarity=0.175 Sum_probs=67.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHc----CCCC--CHHHHHHHHHHH
Q 008633 380 SGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSY-GPPHAAMMMYKKARKV----GCKL--SLTAYKLLLRRL 452 (558)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~ 452 (558)
..|...|++..|-.++.++-+ .|... |+++.|++.|+++.+. + .+ -..++..+...+
T Consensus 102 ~~y~~~G~~~~aA~~~~~lA~---------------~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKELAE---------------IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHHHH---------------HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHH
Confidence 445555555555554444322 23333 5556666655554431 1 11 123444555666
Q ss_pred HcCCChhHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhC--CCCCC--HHHHHHHHHHH
Q 008633 453 SGFGKCGMLLDLWHEMQESGYPS-----DGE-IYEYVIAGLCNIGQLENAVLVMEESLRK--GFCPS--RLVYSKLSNKL 522 (558)
Q Consensus 453 ~~~g~~~~A~~~~~~m~~~~~~p-----~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~~~~~l~~~~ 522 (558)
.+.|++++|.++|+++...-... +.. .|-..+-++...|+.-.|.+.+++.... ++..+ ......|+.+|
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 77777777777777665432211 111 2222333455567777777777776643 22222 34455555655
Q ss_pred Hh--cCCHHHHHHHHHHH
Q 008633 523 LA--SNKLESAYNLFRKI 538 (558)
Q Consensus 523 ~~--~g~~~~A~~~~~~m 538 (558)
-. ...+++|..-|+.+
T Consensus 246 ~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 246 EEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HTT-CCCHHHHCHHHTTS
T ss_pred HhCCHHHHHHHHHHHccc
Confidence 43 23455555544444
No 166
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.48 E-value=0.0026 Score=59.97 Aligned_cols=131 Identities=11% Similarity=0.021 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 008633 199 ETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWC-LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGW 277 (558)
Q Consensus 199 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~-~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~ 277 (558)
.+|..+++..-+.+..+.|.++|.+..+.+. .+..+|...... |...++.+.|.++|+......+.+...|..-++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3577777777777778888888888875432 233334333333 22345566688888877766666777787778888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 278 SKLGQVVEMERVLKEIVAEGFSPDS---LTFSFLIEGLGRAGRIDDAIEVFDTMKEK 331 (558)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 331 (558)
.+.++.+.|..+|++.... +.++. ..|...+..-.+.|+++.+.++.+.+.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888877754 22222 36777777777777777777777766654
No 167
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.18 Score=52.04 Aligned_cols=340 Identities=14% Similarity=0.075 Sum_probs=196.0
Q ss_pred HhcCChHHHHHHHHHHH--------HCCCCCCHHHHHH-----HHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008633 174 GRRKFFDFMCNVLSDMA--------KEGVNPDLETLSI-----VMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVL 240 (558)
Q Consensus 174 ~~~~~~~~a~~l~~~m~--------~~g~~~~~~t~~~-----li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 240 (558)
.+..++++-..+.++.. +-|++.+..-|.. +|+.+...+.+..|+++-..+...-..- ..+|....
T Consensus 400 l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa 478 (829)
T KOG2280|consen 400 LRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWA 478 (829)
T ss_pred cccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHH
Confidence 34556666655555543 3467766665544 5777788899999999988776432222 45666666
Q ss_pred HHHHhcCC---HhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHH
Q 008633 241 WCLCQRLH---VGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFS----PDSLTFSFLIEGLG 313 (558)
Q Consensus 241 ~~~~~~~~---~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~~~~ 313 (558)
.-+.+..+ -+.+..+-+++.... ....+|..+..-....|+.+-|..+++.=...+.. .+..-+...+.-+.
T Consensus 479 ~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kai 557 (829)
T KOG2280|consen 479 RRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAI 557 (829)
T ss_pred HHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHH
Confidence 66666532 233344444444432 35678888888888899999998887643322211 11222445556666
Q ss_pred hcCCHHHHHHHHHHHHHCC-----------CCCCHHHHHHHHH--------HHHhcCCHHHHHHHH--HHhh----hCCC
Q 008633 314 RAGRIDDAIEVFDTMKEKG-----------CGPDTNAYNAVIS--------NYISVGDFDECMKYY--KGMS----SYNC 368 (558)
Q Consensus 314 ~~g~~~~a~~~~~~m~~~g-----------~~p~~~~~~~li~--------~~~~~g~~~~A~~~~--~~m~----~~~~ 368 (558)
..|+.+-...++-.+...- .+.....|.-+++ .+...++-.++..-| +... ..|.
T Consensus 558 es~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r 637 (829)
T KOG2280|consen 558 ESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGR 637 (829)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhccc
Confidence 7777777666665554331 1111222222222 011111111111111 1100 0122
Q ss_pred CCCHHHHHHHHHHHHhcCCHH---HH-------HHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 008633 369 EPNMDTYTRLISGLLKSRKVA---DA-------LEVFEEMLD-RGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVG 437 (558)
Q Consensus 369 ~p~~~~~~~li~~~~~~g~~~---~A-------~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 437 (558)
.|+. .....++.+..... +| +.+.+.+.. .|......+.+--+.-+...|+-.+|.++-.+.+
T Consensus 638 ~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk--- 711 (829)
T KOG2280|consen 638 IPAL---KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK--- 711 (829)
T ss_pred chhH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC---
Confidence 2222 23334444443311 11 122222222 2333444455555556777888888877765543
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHH
Q 008633 438 CKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSK 517 (558)
Q Consensus 438 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 517 (558)
-||...|-.-+.+++..+++++.+++-+.+.. +.-|...+.+|.+.|+.++|.+++-+.- | .. -
T Consensus 712 -ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~--~---l~----e 775 (829)
T KOG2280|consen 712 -IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVG--G---LQ----E 775 (829)
T ss_pred -CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccC--C---hH----H
Confidence 47788888889999999999987777665542 3457778999999999999999987542 2 11 5
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 008633 518 LSNKLLASNKLESAYNLFRK 537 (558)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~ 537 (558)
.+.+|.+.|++.+|.++--+
T Consensus 776 kv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 776 KVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHHhccHHHHHHHHHH
Confidence 67889999999999876543
No 168
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.47 E-value=0.11 Score=49.69 Aligned_cols=105 Identities=15% Similarity=0.092 Sum_probs=54.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 008633 376 TRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGF 455 (558)
Q Consensus 376 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 455 (558)
+..|.-+...|+...|.++-.+. -.|+...|..-+.+++..+++++-.++-.. +-++.-|..++.+|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 33344445555555555554433 135555566666666666666555443221 12234555566666666
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 008633 456 GKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVM 500 (558)
Q Consensus 456 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 500 (558)
|+..+|..+...+ + +..-+..|.+.|++.+|.+..
T Consensus 251 ~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 251 GNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHH
Confidence 6666665555541 1 233455556666666665543
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.46 E-value=0.0029 Score=62.00 Aligned_cols=101 Identities=14% Similarity=0.079 Sum_probs=81.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008633 414 LEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQL 493 (558)
Q Consensus 414 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 493 (558)
...+...|+++.|+..|+++++.. +-+...|..+..+|.+.|++++|+..++++.+.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 345667899999999999998865 4467788888889999999999999999998864 44677888889999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHH
Q 008633 494 ENAVLVMEESLRKGFCPSRLVYSKL 518 (558)
Q Consensus 494 ~~A~~~~~~m~~~g~~p~~~~~~~l 518 (558)
++|+..|+++++. .|+......+
T Consensus 87 ~eA~~~~~~al~l--~P~~~~~~~~ 109 (356)
T PLN03088 87 QTAKAALEKGASL--APGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHH
Confidence 9999999999875 4654333333
No 170
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.46 E-value=0.11 Score=49.35 Aligned_cols=288 Identities=13% Similarity=0.071 Sum_probs=179.3
Q ss_pred cCCHhHHHHHHHHhhcCCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHH
Q 008633 246 RLHVGAASSLFNSMKGKVLFNVMTYNIVISG--WSKLGQVVEMERVLKEIVAEGFSPDSL--TFSFLIEGLGRAGRIDDA 321 (558)
Q Consensus 246 ~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a 321 (558)
.|+-..|.++-.+..+.+..|....-.++.+ -.-.|+++.|.+-|+.|... |... -...|.-...+.|..+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 4566666666555543333344444444433 33468888888888888752 2221 122333333467888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCHHH--HHHHHHHHHh---cCCHHHHHHHH
Q 008633 322 IEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYN-CEPNMDT--YTRLISGLLK---SRKVADALEVF 395 (558)
Q Consensus 322 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~--~~~li~~~~~---~g~~~~A~~~~ 395 (558)
...-+..-+.-.. -...+...+...|..|+++.|+++.+.-.+.. +.+++.- -..|+.+-.. .-+...|...-
T Consensus 174 r~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 8877776655333 34567788888899999999999988765533 3444432 2233333221 23455566555
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH-CCC
Q 008633 396 EEMLDRGIVPSTG-TITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQE-SGY 473 (558)
Q Consensus 396 ~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~ 473 (558)
.+..+ +.||.. .-.....++.+.|+..++-.+++.+.+....|+. +. .|.+..--+.++.-+++... ..+
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~----lY~~ar~gdta~dRlkRa~~L~sl 324 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL----LYVRARSGDTALDRLKRAKKLESL 324 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH----HHHHhcCCCcHHHHHHHHHHHHhc
Confidence 55444 345532 2223446788899999999999999887655543 22 23333333344444443332 112
Q ss_pred CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCchh
Q 008633 474 PS-DGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLA-SNKLESAYNLFRKIKIARQNDYA 547 (558)
Q Consensus 474 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~~~~~~~ 547 (558)
+| |....-.+..+....|++..|..--+...+. .|....|..|.+.-.. .|+-.++.+.+.+..+....|.|
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW 398 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcc
Confidence 33 5667778888888999999998888777644 6888999888888765 49999999999888876666654
No 171
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.45 E-value=0.0045 Score=51.40 Aligned_cols=93 Identities=6% Similarity=-0.072 Sum_probs=65.7
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008633 447 LLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASN 526 (558)
Q Consensus 447 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 526 (558)
.+...+...|++++|.++|+-+...+ +-+..-|-.|.-++-..|++++|+..|..+.... +-|+..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 34444667788888888887777654 3355566667777777788888888888777664 244677777888888888
Q ss_pred CHHHHHHHHHHHHHh
Q 008633 527 KLESAYNLFRKIKIA 541 (558)
Q Consensus 527 ~~~~A~~~~~~m~~~ 541 (558)
+.+.|.+.|+.....
T Consensus 118 ~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 118 NVCYAIKALKAVVRI 132 (157)
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888887766543
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.43 E-value=0.00027 Score=53.04 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=51.8
Q ss_pred CCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 455 FGKCGMLLDLWHEMQESGY-PSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYN 533 (558)
Q Consensus 455 ~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 533 (558)
.|+++.|+.+++++.+... .++...+..+..++.+.|++++|+.++++ .+.+ ..+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4677778888877776432 12344555577788888888888888877 3222 1223444456777888888888888
Q ss_pred HHHH
Q 008633 534 LFRK 537 (558)
Q Consensus 534 ~~~~ 537 (558)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.42 E-value=0.0028 Score=54.82 Aligned_cols=81 Identities=11% Similarity=-0.139 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHH
Q 008633 198 LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKF--DAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVIS 275 (558)
Q Consensus 198 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~ 275 (558)
...|..+...+...|++++|+..+++.......+ ...++..+..++...|+.++|...+++.....+....+++.+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 3445555556666667777777666665442221 12355566666666666666666666655444444445555555
Q ss_pred HHH
Q 008633 276 GWS 278 (558)
Q Consensus 276 ~~~ 278 (558)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 554
No 174
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.42 E-value=0.01 Score=51.60 Aligned_cols=86 Identities=10% Similarity=-0.081 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 008633 200 TLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFD--AESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGW 277 (558)
Q Consensus 200 t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~ 277 (558)
.+..+...+...|++++|...|++..+.+..+. ...+..+..++.+.|++++|...+++.....+.+...+..+...+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344444444455555555555555443321111 234444444455555555555555444433333444444444455
Q ss_pred HhcCCHHH
Q 008633 278 SKLGQVVE 285 (558)
Q Consensus 278 ~~~g~~~~ 285 (558)
...|+...
T Consensus 117 ~~~g~~~~ 124 (172)
T PRK02603 117 HKRGEKAE 124 (172)
T ss_pred HHcCChHh
Confidence 44444333
No 175
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.38 E-value=0.0056 Score=59.97 Aligned_cols=92 Identities=7% Similarity=-0.022 Sum_probs=66.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008633 273 VISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGD 352 (558)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 352 (558)
-...+...|++++|+..|++.++.. +-+...|..+..+|.+.|++++|...++.+.+.... +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence 3455666778888888888877754 235566777777777888888888888887776433 56677777778888888
Q ss_pred HHHHHHHHHHhhhC
Q 008633 353 FDECMKYYKGMSSY 366 (558)
Q Consensus 353 ~~~A~~~~~~m~~~ 366 (558)
+++|...|++..+.
T Consensus 86 ~~eA~~~~~~al~l 99 (356)
T PLN03088 86 YQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888877765
No 176
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.34 E-value=0.011 Score=51.33 Aligned_cols=90 Identities=18% Similarity=0.107 Sum_probs=49.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008633 266 NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD--SLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAV 343 (558)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 343 (558)
....+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+++..+.... +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 344455566666666666666666666654322221 244555566666666666666666666554322 34455555
Q ss_pred HHHHHhcCCHHHH
Q 008633 344 ISNYISVGDFDEC 356 (558)
Q Consensus 344 i~~~~~~g~~~~A 356 (558)
..+|...|+...+
T Consensus 113 g~~~~~~g~~~~a 125 (172)
T PRK02603 113 AVIYHKRGEKAEE 125 (172)
T ss_pred HHHHHHcCChHhH
Confidence 5555555554333
No 177
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.31 E-value=0.054 Score=49.80 Aligned_cols=53 Identities=9% Similarity=0.065 Sum_probs=25.6
Q ss_pred HhcCCHhHHHHHHHHhhcCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008633 244 CQRLHVGAASSLFNSMKGKVLFNVMTY---NIVISGWSKLGQVVEMERVLKEIVAE 296 (558)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~ 296 (558)
.+.|++++|.+.|+.+....|-+.... -.++.++.+.+++++|...+++..+.
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344555555555555544333332222 23344555555555555555555543
No 178
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.29 E-value=0.00056 Score=51.28 Aligned_cols=14 Identities=29% Similarity=0.252 Sum_probs=4.8
Q ss_pred HHHhcCCHHHHHHH
Q 008633 276 GWSKLGQVVEMERV 289 (558)
Q Consensus 276 ~~~~~g~~~~A~~~ 289 (558)
++.+.|++++|+++
T Consensus 67 ~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 67 CLLKLGKYEEAIKA 80 (84)
T ss_dssp HHHHTT-HHHHHHH
T ss_pred HHHHhCCHHHHHHH
Confidence 33333333333333
No 179
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.24 E-value=0.076 Score=45.01 Aligned_cols=128 Identities=15% Similarity=0.103 Sum_probs=64.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHH
Q 008633 369 EPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGC-KLSLTAYKL 447 (558)
Q Consensus 369 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ 447 (558)
.|++..--.|..++...|+..+|...|.+....-..-|....-.+.++....+++..|...++++.+.+. .-++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4555555556666666666666666666655433344445555555555555666666666655554320 011222333
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 008633 448 LLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVL 498 (558)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 498 (558)
+.+.|...|+...|..-|+..... -|+...-......+.++|+.++|..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 444555555555555555555543 3333333333333445555444443
No 180
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.22 E-value=0.013 Score=48.66 Aligned_cols=91 Identities=9% Similarity=0.032 Sum_probs=52.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 308 LIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRK 387 (558)
Q Consensus 308 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 387 (558)
+...+...|++++|.++|+.+....+. +..-|-.|.-++-..|++++|+..|....... +-|...+-.+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 334445566666666666666555443 44455556666666666666666666665544 3445555566666666666
Q ss_pred HHHHHHHHHHHHH
Q 008633 388 VADALEVFEEMLD 400 (558)
Q Consensus 388 ~~~A~~~~~~m~~ 400 (558)
.+.|.+.|+..+.
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665544
No 181
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.18 E-value=0.094 Score=52.90 Aligned_cols=104 Identities=18% Similarity=0.223 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHH
Q 008633 196 PDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVIS 275 (558)
Q Consensus 196 ~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~ 275 (558)
+.+..+.+-+-.|...|.+++|.++-. +-.....|.-|..-....-+++-|.+.|.+.+..
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iac------lgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl------------- 614 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIAC------LGVTDTDWRELAMEALEALDFETARKAYIRVRDL------------- 614 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccc------cceecchHHHHHHHHHhhhhhHHHHHHHHHHhcc-------------
Confidence 334445555566677777777765421 1112223333433333333444444444333321
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 276 GWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDT 327 (558)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 327 (558)
.+-+...-+++|++.|-.|+... +...++-.|++.+|-++|.+
T Consensus 615 ------~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 615 ------RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred ------HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 23344445677777787777654 33455667777777777754
No 182
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.17 E-value=0.011 Score=51.24 Aligned_cols=62 Identities=13% Similarity=0.106 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 304 TFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGP--DTNAYNAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 304 t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
.|..+...+...|++++|...++........+ ...++..+..+|...|++++|++.+++...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444445555555555555554432221 123455555556666666666666655554
No 183
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.15 E-value=0.13 Score=43.74 Aligned_cols=131 Identities=14% Similarity=0.121 Sum_probs=76.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHH
Q 008633 333 CGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRG---IVPSTGT 409 (558)
Q Consensus 333 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~ 409 (558)
..|++..--.|..++.+.|+..+|...|++...--..-|....-.+.++....+++.+|...++++-+.. -.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~-- 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG-- 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--
Confidence 3455555556667777777777777777776644344556666666666666777777777777666542 23333
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 008633 410 ITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHE 467 (558)
Q Consensus 410 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 467 (558)
.-.+.+.+...|.+.+|+..|+..... .|+...-......+.++|+.+++..-+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 234555666677777777777766653 23333322233345566666655443333
No 184
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.13 E-value=0.051 Score=51.45 Aligned_cols=113 Identities=19% Similarity=0.294 Sum_probs=57.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHH
Q 008633 274 ISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRA-GRIDDAIEVFDTMKEK----GCG-PDTNAYNAVISNY 347 (558)
Q Consensus 274 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~m~~~----g~~-p~~~~~~~li~~~ 347 (558)
+..|...|++..|-+.+.++ ...|-.. |++++|.+.|++..+. |-. --..++..+...+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 34455555555555444443 2334444 6666666666665432 210 0123445566777
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCC-----CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 348 ISVGDFDECMKYYKGMSSYNCEP-----NMD-TYTRLISGLLKSRKVADALEVFEEMLDR 401 (558)
Q Consensus 348 ~~~g~~~~A~~~~~~m~~~~~~p-----~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (558)
.+.|++++|.++|+++....... ++. .|-..+-++...|+...|.+.+++....
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777777777766532211 121 2223334555667777777777776543
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.12 E-value=0.02 Score=45.74 Aligned_cols=89 Identities=18% Similarity=0.034 Sum_probs=43.3
Q ss_pred HHHHHhCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCC---ChhhHHHHHHHHHhc
Q 008633 206 DSFIRAGQVYKAIQMLGRLEDFGLKFD--AESLNVVLWCLCQRLHVGAASSLFNSMKGKVLF---NVMTYNIVISGWSKL 280 (558)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~---~~~~~~~li~~~~~~ 280 (558)
.++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+|++.....|. +......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 334445556666666666555554432 223334444555555555555555555433222 222223333445555
Q ss_pred CCHHHHHHHHHHHH
Q 008633 281 GQVVEMERVLKEIV 294 (558)
Q Consensus 281 g~~~~A~~~~~~m~ 294 (558)
|+.++|+..+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 66666665555443
No 186
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.09 E-value=0.042 Score=56.42 Aligned_cols=64 Identities=11% Similarity=0.039 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 336 DTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDR 401 (558)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (558)
+...|..+.-.+...|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++....
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34455555555555566666666666666553 45666666666666666666666666666553
No 187
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.06 E-value=0.0079 Score=54.91 Aligned_cols=100 Identities=19% Similarity=0.306 Sum_probs=73.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008633 312 LGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADA 391 (558)
Q Consensus 312 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 391 (558)
+.+.+++.+|+..|.+.++.... |.+.|..-..+|++.|.++.|++=.+..+..+ +-...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 45677888888888888877544 77777777888888888888888877777643 23356788888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHH
Q 008633 392 LEVFEEMLDRGIVPSTGTITSFLE 415 (558)
Q Consensus 392 ~~~~~~m~~~~~~p~~~~~~~ll~ 415 (558)
++.|++.++ +.|+..+|..=++
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHH
Confidence 888887766 4677777655554
No 188
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.01 E-value=0.14 Score=45.78 Aligned_cols=170 Identities=12% Similarity=0.168 Sum_probs=90.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008633 343 VISNYISVGDFDECMKYYKGMSSYNC--EPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSY 420 (558)
Q Consensus 343 li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 420 (558)
....+...|++++|.+.|+.+....- +--....-.++.++.+.|++++|...+++..+.-......-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 34445566777777777777665310 1112334455666677777777777777766542111111222222222211
Q ss_pred C-------------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008633 421 G-------------PPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGL 487 (558)
Q Consensus 421 g-------------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 487 (558)
. ...+|. ..+..++..|-......+|...+..+.+. =...--.+...|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~---------------~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAI---------------EEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFY 151 (203)
T ss_dssp HHHHHHH-TT---HHHHHHH---------------HHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHH---------------HHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 1 111222 23444555555555666666555555431 001122356678
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHH
Q 008633 488 CNIGQLENAVLVMEESLRKGFCPS----RLVYSKLSNKLLASNKLESAYN 533 (558)
Q Consensus 488 ~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~ 533 (558)
.+.|.+..|..-++.+++. -|+ ......++.+|.+.|..+.|..
T Consensus 152 ~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 8999999999999999886 354 4566778889999998885543
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.96 E-value=0.0023 Score=45.59 Aligned_cols=50 Identities=18% Similarity=0.131 Sum_probs=22.0
Q ss_pred cCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 246 RLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVA 295 (558)
Q Consensus 246 ~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (558)
.|++++|.++|+++....|-+...+..++.+|.+.|++++|.++++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444433333444444444444444444444444444443
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.96 E-value=0.0043 Score=44.32 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 008633 476 DGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASN-KLESAYNLFRKIKI 540 (558)
Q Consensus 476 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 540 (558)
+..+|..+...+...|++++|+..|++.++.. +-+...|..+..+|.+.| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45677778888888888888888888888763 223677888888888888 68888888877764
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.94 E-value=0.0042 Score=44.19 Aligned_cols=52 Identities=19% Similarity=0.381 Sum_probs=24.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 008633 314 RAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSY 366 (558)
Q Consensus 314 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 366 (558)
..|++++|.++|+.+.+.... +...+..+..+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555555555555444322 4444444555555555555555555555443
No 192
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.91 E-value=0.011 Score=56.02 Aligned_cols=131 Identities=11% Similarity=-0.007 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHH----HCCC-CCCHHH
Q 008633 410 ITSFLEPLCSYGPPHAAMMMYKKAR----KVGCK-LSLTAYKLLLRRLSGFGKCGMLLDLWHEMQ----ESGY-PSDGEI 479 (558)
Q Consensus 410 ~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~-~p~~~~ 479 (558)
|..+...|.-.|+++.|+...+.-. +.|-+ .....+..+..++.-.|+++.|.+.|+... +.|- .....+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4444444555566666665554321 22211 123455566666666677777766665432 2221 112334
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 480 YEYVIAGLCNIGQLENAVLVMEESLR----K-GFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
...|...|.-...++.|+.++.+=+. . ...-....+-+|.++|...|..++|..+.+.-.+
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45566666666666777666554321 1 1112245666677777777777777766665443
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.91 E-value=0.062 Score=42.99 Aligned_cols=90 Identities=17% Similarity=0.180 Sum_probs=41.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhc
Q 008633 275 SGWSKLGQVVEMERVLKEIVAEGFSPD--SLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCG--PDTNAYNAVISNYISV 350 (558)
Q Consensus 275 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~ 350 (558)
.++-..|+.++|+.+|++....|...+ ...+..+...+...|++++|..++++....... -+......+.-++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 334445555555555555555554433 123334444555555555555555555443111 0111112222344455
Q ss_pred CCHHHHHHHHHHhh
Q 008633 351 GDFDECMKYYKGMS 364 (558)
Q Consensus 351 g~~~~A~~~~~~m~ 364 (558)
|+.++|++.+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555554433
No 194
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.90 E-value=0.025 Score=52.45 Aligned_cols=95 Identities=8% Similarity=0.097 Sum_probs=56.3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC----HHHH
Q 008633 444 AYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDG----EIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS----RLVY 515 (558)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~ 515 (558)
.|...+..+.+.|++++|...|+.+.+. .|+. ..+..+...|...|++++|...|+.+++. .|+ ...+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl 220 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHH
Confidence 3444444444556667777666666654 2322 35556666667777777777777776654 122 4455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 008633 516 SKLSNKLLASNKLESAYNLFRKIKIAR 542 (558)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 542 (558)
..++..+...|+.++|.+.++++.+..
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 555666666777777777777666543
No 195
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.89 E-value=0.0055 Score=43.17 Aligned_cols=55 Identities=13% Similarity=-0.002 Sum_probs=32.3
Q ss_pred HHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 241 WCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVA 295 (558)
Q Consensus 241 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (558)
..+.+.|++++|.+.|+++....|-+...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455556666666666666555555556666666666666666666666666554
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.033 Score=49.78 Aligned_cols=129 Identities=14% Similarity=0.105 Sum_probs=60.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-----H
Q 008633 167 NVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVL-----W 241 (558)
Q Consensus 167 ~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll-----~ 241 (558)
+.++..+.-.|.+.-..+++.+..+...+.++.....+.+.-.+.|+.+.|...|++..+..-..|....+.++ .
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 44444555555555555555555554434444455555555555555555555555544332222222222222 2
Q ss_pred HHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 242 CLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVA 295 (558)
Q Consensus 242 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (558)
.|.-.+++..|...|.++....+.|+..-|.-.-+..-.|+...|++.++.|++
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 233344444555555544444444444444444444444555555555555554
No 197
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.83 E-value=0.017 Score=54.93 Aligned_cols=262 Identities=15% Similarity=0.072 Sum_probs=157.3
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHhCCHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHH
Q 008633 172 ALGRRKFFDFMCNVLSDMAKEGVNPDLE----TLSIVMDSFIRAGQVYKAIQMLGRLE----DFGLK-FDAESLNVVLWC 242 (558)
Q Consensus 172 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~----t~~~li~~~~~~g~~~~A~~~~~~~~----~~g~~-~~~~~~~~ll~~ 242 (558)
-+|+.|+....+.+|+...+.|.. |.. +|..|.++|.-.+++++|++.+..=. ..|-+ -.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 478889999999999999888743 444 45666677777888888888764311 11100 012223334444
Q ss_pred HHhcCCHhHHHHHHHH-h------hcCCCCChhhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHH
Q 008633 243 LCQRLHVGAASSLFNS-M------KGKVLFNVMTYNIVISGWSKLGQ--------------------VVEMERVLKEIVA 295 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~-m------~~~~~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~ 295 (558)
+--.|.+++|...-.+ + -.++. ....+..+...|...|+ ++.|.++|.+-.+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~-e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVL-ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHh-hhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 4445666665543221 1 11111 22334445555554432 3344455543222
Q ss_pred ----cCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 296 ----EGFS-PDSLTFSFLIEGLGRAGRIDDAIEVFDTMK----EKGCG-PDTNAYNAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 296 ----~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~----~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
.|-. .-...|..|-+.|.-.|+++.|+..++.-. +.|-. .....+..+.+++.-.|+++.|.+.|+....
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 1100 112346666666777889999988776533 22321 1234678888999999999999998886532
Q ss_pred ----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008633 366 ----YN-CEPNMDTYTRLISGLLKSRKVADALEVFEEMLD----R-GIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARK 435 (558)
Q Consensus 366 ----~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (558)
.| -.....+.-+|...|.-..++++|+..+.+-.. . ...-....+.++..++...|.-++|+.+.+...+
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 22 123445666788888888899999888765332 1 1223456788888889889988888877765544
No 198
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.073 Score=49.01 Aligned_cols=103 Identities=13% Similarity=0.059 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHhHHHHHHHHHHhCCCCCCHHHH
Q 008633 439 KLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIG---QLENAVLVMEESLRKGFCPSRLVY 515 (558)
Q Consensus 439 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~ 515 (558)
+-|...|-.|...|...|+++.|..-|.+..+.. ++|...+..+..++.... ...++..+|++++... +-|....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 3455556666666666666666666666655532 334455555555443321 2445566666666542 2234555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 008633 516 SKLSNKLLASNKLESAYNLFRKIKIARQ 543 (558)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 543 (558)
..|...+...|++.+|...|+.|.+...
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 5555566666666666666666655433
No 199
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.78 E-value=0.0059 Score=43.00 Aligned_cols=54 Identities=17% Similarity=0.361 Sum_probs=30.5
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 484 IAGLCNIGQLENAVLVMEESLRKGFCP-SRLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 484 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
...+...|++++|...|+++++.. | +...+..+..++...|++++|...++++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555666666666666666542 3 34555556666666666666666666554
No 200
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.70 E-value=0.027 Score=45.51 Aligned_cols=102 Identities=10% Similarity=0.049 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008633 406 STGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIA 485 (558)
Q Consensus 406 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 485 (558)
|..++..++.++++.|+.+....+++..-.. ..+.. ...+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI--~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGI--DVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCC--CCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 3456666777777777777666666544321 11100 00000 1123457888999999999
Q ss_pred HHHhcCCHhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC
Q 008633 486 GLCNIGQLENAVLVMEESLRK-GFCPSRLVYSKLSNKLLASNK 527 (558)
Q Consensus 486 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~ 527 (558)
+|+..|++..|+++++...+. +++.+..+|..|++-....-+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999988765 777778899988887654433
No 201
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.11 Score=47.87 Aligned_cols=116 Identities=12% Similarity=0.096 Sum_probs=78.8
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCH
Q 008633 261 GKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRA---GRIDDAIEVFDTMKEKGCGPDT 337 (558)
Q Consensus 261 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---g~~~~a~~~~~~m~~~g~~p~~ 337 (558)
...|-|...|-.|...|...|+++.|..-|.+..+.- .++...+..+..++... ....++.++|+++.+.... |+
T Consensus 150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~i 227 (287)
T COG4235 150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NI 227 (287)
T ss_pred HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cH
Confidence 3466688888888888888888888888888877642 23444555555444332 2445678888888777544 66
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 008633 338 NAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLIS 380 (558)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 380 (558)
.+...|...+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 228 ral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 228 RALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 677777778888888888888888888763 33344555544
No 202
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.61 E-value=0.24 Score=44.19 Aligned_cols=58 Identities=7% Similarity=0.043 Sum_probs=29.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 008633 169 IVKALGRRKFFDFMCNVLSDMAKEGV--NPDLETLSIVMDSFIRAGQVYKAIQMLGRLED 226 (558)
Q Consensus 169 li~~~~~~~~~~~a~~l~~~m~~~g~--~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~ 226 (558)
....+.+.|++.+|...|+.+..... +--....-.++.++-+.|+++.|...+++..+
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444556666666666666655421 11233444555566666666666666666554
No 203
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.56 E-value=0.77 Score=44.02 Aligned_cols=109 Identities=14% Similarity=0.099 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008633 409 TITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLC 488 (558)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 488 (558)
+.+.-|.-|...|+...|.++-.+. . .|+..-|-..+.+|+..++|++..++-.. . -.+.-|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 4455566677788888887765443 2 47888999999999999999987766432 1 13367999999999
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 489 NIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRK 537 (558)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 537 (558)
+.|+..+|..+..+ + ++ ..-+..|.+.|++.+|.+.--+
T Consensus 249 ~~~~~~eA~~yI~k-----~-~~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPK-----I-PD----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHh-----C-Ch----HHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999886 2 22 4466888999999999776433
No 204
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.55 E-value=0.0095 Score=42.49 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAG-RIDDAIEVFDTM 328 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m 328 (558)
+|..+...+...|++++|+..|++..+.. +-+...|..+..++.+.| ++++|.+.+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 33444444444444444444444443332 112233333333444444 344444444433
No 205
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.85 Score=43.96 Aligned_cols=53 Identities=9% Similarity=-0.019 Sum_probs=30.6
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 008633 172 ALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLE 225 (558)
Q Consensus 172 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~ 225 (558)
.+-+..++.+|+..+....+.+ +-+..-|..-...+...|++++|.--.+.-.
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~ 110 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSV 110 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhhe
Confidence 3445556666777776666654 2245555555556666677776665554433
No 206
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.47 E-value=0.87 Score=43.55 Aligned_cols=307 Identities=14% Similarity=0.056 Sum_probs=171.1
Q ss_pred chHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHhCCHHHH
Q 008633 142 SGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALG--RRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDS--FIRAGQVYKA 217 (558)
Q Consensus 142 ~~~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~--~~~~g~~~~A 217 (558)
.+..+.++|+-..++. .|..|-.++. -.|+-..|.++-.+-.+. +.-|...+..++.+ -.-.|+.+.|
T Consensus 68 sP~t~~Ryfr~rKRdr-------gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~A 139 (531)
T COG3898 68 SPYTARRYFRERKRDR-------GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDA 139 (531)
T ss_pred CcHHHHHHHHHHHhhh-------HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHH
Confidence 3456666776655554 3666666664 456777777766655433 34455555555544 3456999999
Q ss_pred HHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 218 IQMLGRLEDFGLKFDAESLN----VVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEI 293 (558)
Q Consensus 218 ~~~~~~~~~~g~~~~~~~~~----~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 293 (558)
.+-|+.|.. |+++-. .|.-.--+.|..+.|.++-+...+.-+.-...+...+...|..|+++.|+++++.-
T Consensus 140 r~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 140 RKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred HHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 999999986 333322 23233345788888888888887766667788889999999999999999999877
Q ss_pred HHc-CCCCCHHH--HHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 008633 294 VAE-GFSPDSLT--FSFLIEGLGR---AGRIDDAIEVFDTMKEKGCGPDTN-AYNAVISNYISVGDFDECMKYYKGMSSY 366 (558)
Q Consensus 294 ~~~-g~~p~~~t--~~~ll~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 366 (558)
+.. -+.+++.- -..|+.+-.. .-+...|...-.+..+ +.||.. .-..-..++.+.|++.++-.+++.+-+.
T Consensus 215 ~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 215 RAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence 654 23444422 1222222111 1233334443333332 233322 1222346677777777777777777665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 008633 367 NCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDR-GIVPST-GTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTA 444 (558)
Q Consensus 367 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 444 (558)
. |....+. +..+.+.| +.+..-++...+. .++|+. ...-.+..+-...|++..|..--+...+ ..|....
T Consensus 293 e--PHP~ia~--lY~~ar~g--dta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~ 364 (531)
T COG3898 293 E--PHPDIAL--LYVRARSG--DTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESA 364 (531)
T ss_pred C--CChHHHH--HHHHhcCC--CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhH
Confidence 3 3333222 12223333 3333333333221 233432 3344455555556666655544444333 2455555
Q ss_pred HHHHHHHHHcC-CChhHHHHHHHHHHHC
Q 008633 445 YKLLLRRLSGF-GKCGMLLDLWHEMQES 471 (558)
Q Consensus 445 ~~~li~~~~~~-g~~~~A~~~~~~m~~~ 471 (558)
|..|.+.-... |+-+++...+.+....
T Consensus 365 ~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 365 YLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 65555544333 6666666666665543
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.69 Score=41.74 Aligned_cols=131 Identities=15% Similarity=0.073 Sum_probs=73.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-----HHHH
Q 008633 270 YNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAY-----NAVI 344 (558)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-----~~li 344 (558)
.+.++..+.-.|.+.-...++.+..+...+.+......+++.-.+.|+.+.|...|+..++..-..|..+. ....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34555555556666666666666666554555666666666666677777777777655543222222222 2223
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 345 SNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDR 401 (558)
Q Consensus 345 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (558)
..|.-.+++..|...|+++...+ ..|...-|.-.-+..-.|+..+|++.++.|.+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455566666666666666543 334444444333444456667777777776664
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.41 E-value=0.017 Score=41.73 Aligned_cols=55 Identities=20% Similarity=0.213 Sum_probs=27.6
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 451 RLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 451 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
.|.+.+++++|.++++.+...+ +.+...|.....++.+.|++++|...+++..+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445555555555555555442 223444444555555555555555555555543
No 209
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.35 E-value=1.1 Score=43.64 Aligned_cols=32 Identities=16% Similarity=0.134 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 475 SDGEIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 475 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
.|...+.+++.++.-.|+.++|.+..++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 45556677888888899999999999999866
No 210
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.35 E-value=0.02 Score=48.10 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 238 VVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIV 294 (558)
Q Consensus 238 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 294 (558)
.++..+...|+++.|..+.+.+....|.|...|..+|.+|...|+..+|.+.|+++.
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344444455555555555555555455555555555555555555555555555543
No 211
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.27 E-value=0.022 Score=41.82 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 478 EIYEYVIAGLCNIGQLENAVLVMEESLRK--GFC---PS-RLVYSKLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 478 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
.+|+.+...|...|++++|+..++++++. ... |+ ..++..+..+|...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 36677777777778888887777777643 111 22 45677777778888888888888777653
No 212
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.27 E-value=1.3 Score=43.37 Aligned_cols=217 Identities=15% Similarity=0.202 Sum_probs=118.4
Q ss_pred CHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH-------HHHHHHhc
Q 008633 317 RIDDAIEVFDTMKEKGCGP----DTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTR-------LISGLLKS 385 (558)
Q Consensus 317 ~~~~a~~~~~~m~~~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-------li~~~~~~ 385 (558)
+.+++..+-+.+....+.+ -+.++..++....+.++...|.+.+.-+.-. .|+...-.- +-+..|.-
T Consensus 274 ~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~D 351 (549)
T PF07079_consen 274 DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCED 351 (549)
T ss_pred ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcc
Confidence 4455555544444332211 1245566666667777777777777666543 344432211 22222211
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCC-hhHHHHHHHHHHHcCCCCCHHHHHHHH----HHHH
Q 008633 386 ----RKVADALEVFEEMLDRGIVPSTGTITSFLEP---LCSYGP-PHAAMMMYKKARKVGCKLSLTAYKLLL----RRLS 453 (558)
Q Consensus 386 ----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~---~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li----~~~~ 453 (558)
-+..+-+.++++....++.. ......++.+ +-+.|. -++|+++++.+.+.. .-|...-|.+. ..|.
T Consensus 352 D~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~ 429 (549)
T PF07079_consen 352 DESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYK 429 (549)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHH
Confidence 12233344444444433211 1122222222 223344 677888888777642 22333322221 2222
Q ss_pred cC---CChhHHHHHHHHHHHCCCCCCH----HHHHHHHHH--HHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008633 454 GF---GKCGMLLDLWHEMQESGYPSDG----EIYEYVIAG--LCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLA 524 (558)
Q Consensus 454 ~~---g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 524 (558)
.+ ..+.....+-+-+.+.|++|-. ..-|.+.++ +..+|++.++.-.-.-+. .+.|++.+|..++-++..
T Consensus 430 qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e 507 (549)
T PF07079_consen 430 QALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLME 507 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHH
Confidence 22 2334444444555677877643 344555544 557899999887766555 467999999999999999
Q ss_pred cCCHHHHHHHHHHHH
Q 008633 525 SNKLESAYNLFRKIK 539 (558)
Q Consensus 525 ~g~~~~A~~~~~~m~ 539 (558)
..++++|..++.++.
T Consensus 508 ~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 508 NKRYQEAWEYLQKLP 522 (549)
T ss_pred HhhHHHHHHHHHhCC
Confidence 999999999998775
No 213
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.25 E-value=0.046 Score=45.93 Aligned_cols=71 Identities=27% Similarity=0.284 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh-----CCCCCCHHHH
Q 008633 444 AYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLR-----KGFCPSRLVY 515 (558)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 515 (558)
+...++..+...|++++|..+++.+.... +-|...|..+|.+|...|+..+|.++|+++.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 44556666777788888888888877654 55667888888888888888888888877653 3777776543
No 214
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.16 E-value=0.42 Score=48.49 Aligned_cols=213 Identities=15% Similarity=0.163 Sum_probs=124.9
Q ss_pred HHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008633 166 YNVIVKALGRRK--FFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCL 243 (558)
Q Consensus 166 ~~~li~~~~~~~--~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~ 243 (558)
++.-=++|.+-+ .+-+.+.-+++|+++|-.|+... +...|+-.|++.+|-++|.+ .|.+ |..+.+|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmy 668 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRALEMY 668 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHHHHH
Confidence 344444554433 34455666788888888788654 34556677888888888765 3322 2233444
Q ss_pred HhcCCHhHHHHHHHHhh---------cC--CCCChhhHHHHHHHHHhcCCHHHHHHHHH------HHHHcCCCC---CHH
Q 008633 244 CQRLHVGAASSLFNSMK---------GK--VLFNVMTYNIVISGWSKLGQVVEMERVLK------EIVAEGFSP---DSL 303 (558)
Q Consensus 244 ~~~~~~~~A~~~~~~m~---------~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~------~m~~~g~~p---~~~ 303 (558)
.....++.|.+++..-. .+ ...|+.--.+....+...|+.++|..+.- -+.+-+.+. +..
T Consensus 669 TDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere 748 (1081)
T KOG1538|consen 669 TDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAERE 748 (1081)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhh
Confidence 44444444444432110 00 00011111234555666777777765432 122222222 334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH---------
Q 008633 304 TFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDT--------- 374 (558)
Q Consensus 304 t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--------- 374 (558)
+...+...+.+...+.-|-++|..|-.. ..++......++|++|..+-+...+. .||+..
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhh
Confidence 5555555556667777888888877533 45778888999999999999887764 444421
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 375 --YTRLISGLLKSRKVADALEVFEEMLDR 401 (558)
Q Consensus 375 --~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (558)
|.-.-.+|.++|+-.+|..+++++...
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 233446788889999999999887654
No 215
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.16 E-value=0.036 Score=39.98 Aligned_cols=62 Identities=15% Similarity=0.101 Sum_probs=46.4
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchh
Q 008633 485 AGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQNDYA 547 (558)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 547 (558)
..|.+.+++++|.+++++++..+ +.+...+.....++.+.|++++|.+.+++..+.......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 45778888888888888888764 334677777888888888888888888888765554433
No 216
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.15 E-value=0.12 Score=47.97 Aligned_cols=15 Identities=20% Similarity=0.363 Sum_probs=5.8
Q ss_pred hcCCHHHHHHHHHHh
Q 008633 349 SVGDFDECMKYYKGM 363 (558)
Q Consensus 349 ~~g~~~~A~~~~~~m 363 (558)
..|+.++|.++|+++
T Consensus 229 ~~g~~~~A~~~~~~v 243 (263)
T PRK10803 229 DKGDTAKAKAVYQQV 243 (263)
T ss_pred HcCCHHHHHHHHHHH
Confidence 333333333333333
No 217
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=1.2 Score=46.30 Aligned_cols=318 Identities=8% Similarity=0.023 Sum_probs=144.7
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 008633 144 EAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKF--FDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQML 221 (558)
Q Consensus 144 ~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~ 221 (558)
..|...-.|+....+. ....|......+.+..+ -+++.+.+++=...-.. +-..|..+.+.....|+.+.|..++
T Consensus 454 ~vaIQva~~l~~p~~~--~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~-~~iSy~~iA~~Ay~~GR~~LA~kLl 530 (829)
T KOG2280|consen 454 SVAIQVAKLLNLPESQ--GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT-PGISYAAIARRAYQEGRFELARKLL 530 (829)
T ss_pred HHHHHHHHHhCCcccc--ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC-CceeHHHHHHHHHhcCcHHHHHHHH
Confidence 3455566665433221 14556666666666532 22333333332222233 4467788888777899999999888
Q ss_pred HHHHhCCCC----CCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008633 222 GRLEDFGLK----FDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEG 297 (558)
Q Consensus 222 ~~~~~~g~~----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 297 (558)
+.=...+.. .+..-+..-+.-..+.|+.+-...++-.+..+. +...+...+ .+.-.|..+|.+..+..
T Consensus 531 e~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~--~~s~l~~~l------~~~p~a~~lY~~~~r~~ 602 (829)
T KOG2280|consen 531 ELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL--NRSSLFMTL------RNQPLALSLYRQFMRHQ 602 (829)
T ss_pred hcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH--HHHHHHHHH------HhchhhhHHHHHHHHhh
Confidence 654333211 122233444555566677766666665554320 111111111 23344445555444321
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHH--H----HHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHH
Q 008633 298 FSPDSLTFSFLIEGLGRAGRIDDAIEVFD--T----MKEKGCGPDTNAYNAVISNYISVGD----------FDECMKYYK 361 (558)
Q Consensus 298 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~--~----m~~~g~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~ 361 (558)
|..+ +- .+.+.++-.++..-|. . -...|..|+. ....+.+.+... ..+-+++.+
T Consensus 603 ---~~~~---l~-d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~ 672 (829)
T KOG2280|consen 603 ---DRAT---LY-DFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQMKLLKLQR 672 (829)
T ss_pred ---chhh---hh-hhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 1111 01 1111111111111110 0 0011222222 222233333222 111122222
Q ss_pred Hhhh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 008633 362 GMSS-YNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKL 440 (558)
Q Consensus 362 ~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 440 (558)
.+.. .|..-..-+.+--+.-+...|+-.+|.++-.+.+ .||...|..=+.+++..+++++-+++-+...
T Consensus 673 ~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------ 742 (829)
T KOG2280|consen 673 TLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------ 742 (829)
T ss_pred HHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------
Confidence 2221 1212222233444445555666666666654442 4566666666666666666665554443322
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 008633 441 SLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVME 501 (558)
Q Consensus 441 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 501 (558)
++.-|.-.+.+|.+.|+.++|.+++.+.... . -...+|.+.|++.+|.+..-
T Consensus 743 sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 743 SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred CCCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHH
Confidence 1334555666666777777776666554311 1 34556666666666655443
No 218
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.92 E-value=0.12 Score=41.70 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 373 DTYTRLISGLLKSRKVADALEVFEE 397 (558)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~~~~~ 397 (558)
.++..+|.++++.|+.+....+++.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~ 27 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKS 27 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 4455555555555555555555443
No 219
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.91 E-value=0.41 Score=38.23 Aligned_cols=68 Identities=12% Similarity=0.058 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 008633 476 DGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQN 544 (558)
Q Consensus 476 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 544 (558)
+....+..+..+..+|+-+.-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.+.=+.|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44567777888888999888888888887643 688888889999999999999999999888777764
No 220
>PRK15331 chaperone protein SicA; Provisional
Probab=95.87 E-value=0.4 Score=40.29 Aligned_cols=88 Identities=16% Similarity=0.089 Sum_probs=56.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 311 GLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVAD 390 (558)
Q Consensus 311 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 390 (558)
.+...|++++|..+|.-+...++. +..-+..|..++-..+++++|...|......+ .-|...+-....+|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHH
Confidence 345667777777777777665544 45556666667777777777777776655433 2334444555666777777777
Q ss_pred HHHHHHHHHH
Q 008633 391 ALEVFEEMLD 400 (558)
Q Consensus 391 A~~~~~~m~~ 400 (558)
|...|....+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7777776665
No 221
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.78 E-value=0.091 Score=47.61 Aligned_cols=98 Identities=14% Similarity=0.159 Sum_probs=69.8
Q ss_pred ChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------------CHHHHHHH
Q 008633 266 NVMTYNIVISGWSK-----LGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAG----------------RIDDAIEV 324 (558)
Q Consensus 266 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----------------~~~~a~~~ 324 (558)
|-.+|-+++..+.. .+.++-....++.|.+-|+.-|..+|+.|++.+-+-. +-+-+.++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 66677777766654 3567777778888999999999999999988765432 33457778
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHh
Q 008633 325 FDTMKEKGCGPDTNAYNAVISNYISVGD-FDECMKYYKGM 363 (558)
Q Consensus 325 ~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m 363 (558)
+++|+..|+.||-.+-..|++++.+.+- ..+..++.-.|
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 8888888888888888888888877664 23333443344
No 222
>PRK15331 chaperone protein SicA; Provisional
Probab=95.76 E-value=0.33 Score=40.77 Aligned_cols=86 Identities=9% Similarity=-0.154 Sum_probs=44.8
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 008633 418 CSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAV 497 (558)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 497 (558)
...|++++|..+|.-+...+ ..+..-+..|..++-..+++++|+..|......+ .-|...+-....++...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 34566666666666555433 2233344555555555566666666665544332 123333444555556666666666
Q ss_pred HHHHHHHh
Q 008633 498 LVMEESLR 505 (558)
Q Consensus 498 ~~~~~m~~ 505 (558)
..|+..++
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 66655554
No 223
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.75 E-value=0.8 Score=36.66 Aligned_cols=139 Identities=11% Similarity=0.145 Sum_probs=66.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 008633 175 RRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASS 254 (558)
Q Consensus 175 ~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~ 254 (558)
-.|.+++..+++.+.... .+..-++.+|.-....-+-+-..++++.+-+ -.|.. .+|++.....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis----------~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDIS----------KCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GG----------G-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCch----------hhcchHHHHH
Confidence 345666666666665543 2444555555444444444444444443332 11211 1222222222
Q ss_pred HHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 008633 255 LFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCG 334 (558)
Q Consensus 255 ~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 334 (558)
.+-.+-. +....+..+..+.+.|+-+...+++.++.+.+ +++......+..+|.+.|+..++.+++.+..+.|++
T Consensus 78 C~~~~n~----~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 78 CYAKRNK----LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHTT-------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHhcc----hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 2222211 33445556666677777777777777766532 566666677777777777777777777777777653
No 224
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.70 E-value=2.2 Score=41.43 Aligned_cols=76 Identities=13% Similarity=0.038 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhcC----CCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008633 237 NVVLWCLCQRLHVGAASSLFNSMKGK----VLFNVMTYNIVISGWSK---LGQVVEMERVLKEIVAEGFSPDSLTFSFLI 309 (558)
Q Consensus 237 ~~ll~~~~~~~~~~~A~~~~~~m~~~----~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 309 (558)
..++-.|....+++...++.+.+... +.-....--..+-++-+ .|+.++|++++..+....-.++..||..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34444566666666666666666543 11112222233344444 666677777766655444455666666555
Q ss_pred HHH
Q 008633 310 EGL 312 (558)
Q Consensus 310 ~~~ 312 (558)
+.|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 544
No 225
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.63 E-value=0.73 Score=47.02 Aligned_cols=160 Identities=18% Similarity=0.198 Sum_probs=94.6
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhcC--CCC-----ChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHH
Q 008633 237 NVVLWCLCQRLHVGAASSLFNSMKGK--VLF-----NVMTYNIVISGWSK----LGQVVEMERVLKEIVAEGFSPDSLTF 305 (558)
Q Consensus 237 ~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~-----~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 305 (558)
..++....=.|+-+.+++.+.+.... +.. -...|+..+..++- ....+.|.++++.+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 34455555556666666666554332 110 11234444444443 45677888888888775 4666555
Q ss_pred HHH-HHHHHhcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 008633 306 SFL-IEGLGRAGRIDDAIEVFDTMKEKGC---GPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISG 381 (558)
Q Consensus 306 ~~l-l~~~~~~g~~~~a~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 381 (558)
... .+.+...|++++|.+.|+....... +.....+--+.-.+.-.+++++|.+.|..+.+.+ .-+..+|.-+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 433 3455667888888888886553211 1123344456667888889999999999988754 2334444443333
Q ss_pred -HHhcCCH-------HHHHHHHHHHH
Q 008633 382 -LLKSRKV-------ADALEVFEEML 399 (558)
Q Consensus 382 -~~~~g~~-------~~A~~~~~~m~ 399 (558)
+...|+. ++|.++|.+..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3445666 88888888764
No 226
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.60 E-value=2.5 Score=41.33 Aligned_cols=144 Identities=10% Similarity=0.147 Sum_probs=91.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCC
Q 008633 184 NVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKV 263 (558)
Q Consensus 184 ~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 263 (558)
++=++.++. +.|..+|-.||..+...|..++..+++++|..- ++.-..+|..-+.+=...+++.....+|.+...+.
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 554555443 568899999999999999999999999999853 34445677777877777889999999998875542
Q ss_pred CCChhhHHHHHHHHHhcCCHH------HHHHHHHHHH-HcCCCCCH-HHH---HHHHHHHHhcCCH------HHHHHHHH
Q 008633 264 LFNVMTYNIVISGWSKLGQVV------EMERVLKEIV-AEGFSPDS-LTF---SFLIEGLGRAGRI------DDAIEVFD 326 (558)
Q Consensus 264 ~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~-~~g~~p~~-~t~---~~ll~~~~~~g~~------~~a~~~~~ 326 (558)
.+...|..-+..-.+....- ...+.|+-.. -.++.|-. ..| ...+...-..|.+ +...+.+.
T Consensus 107 -l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 107 -LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred -ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 25777877777655544211 1122333222 24555543 233 3344443344544 44556666
Q ss_pred HHHHC
Q 008633 327 TMKEK 331 (558)
Q Consensus 327 ~m~~~ 331 (558)
+|...
T Consensus 186 ral~t 190 (660)
T COG5107 186 RALQT 190 (660)
T ss_pred HHHcC
Confidence 66665
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.55 E-value=0.055 Score=39.63 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=12.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKEIV 294 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~ 294 (558)
+|+.+...|...|++++|++.|++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555555555555555555444
No 228
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.51 E-value=2.3 Score=40.18 Aligned_cols=123 Identities=13% Similarity=0.042 Sum_probs=63.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHHhC-CHHHHHHHHHHHHhC--------CCCCC-----
Q 008633 174 GRRKFFDFMCNVLSDMAKEGVNPDLETLSIV-------MDSFIRAG-QVYKAIQMLGRLEDF--------GLKFD----- 232 (558)
Q Consensus 174 ~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~l-------i~~~~~~g-~~~~A~~~~~~~~~~--------g~~~~----- 232 (558)
.+.|+++.|..++.+....-...++.....+ .......+ +++.|..++++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4677888888888777654211222222222 22223445 777777666654432 11122
Q ss_pred HHHHHHHHHHHHhcCCHh---HHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008633 233 AESLNVVLWCLCQRLHVG---AASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE 296 (558)
Q Consensus 233 ~~~~~~ll~~~~~~~~~~---~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 296 (558)
..++..++.+|...+..+ +|..+++.+....+-....+-.-+..+.+.++.+++.+.+.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 234455555555555433 3444555554444434455555555555566666666666666654
No 229
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.52 Score=45.39 Aligned_cols=139 Identities=14% Similarity=0.065 Sum_probs=94.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 008633 378 LISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGK 457 (558)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 457 (558)
-.+.|.+.|++..|...|+..+.. +. ++..-+.++..... ..-..+++.+..++.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhh
Confidence 347788889999998888876542 00 11111111111111 1123566778888999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCH-HHHHHHH
Q 008633 458 CGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKL-ESAYNLF 535 (558)
Q Consensus 458 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~-~~A~~~~ 535 (558)
+.+|++......+.+ ++|....-.-..++...|+++.|+..|+++++. .|+ ..+-.-|+.+--+.... +...++|
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999876 678888888889999999999999999999976 565 44444455444444444 3446778
Q ss_pred HHHHH
Q 008633 536 RKIKI 540 (558)
Q Consensus 536 ~~m~~ 540 (558)
..|-.
T Consensus 350 ~~mF~ 354 (397)
T KOG0543|consen 350 ANMFA 354 (397)
T ss_pred HHHhh
Confidence 77753
No 230
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.31 E-value=1.4 Score=36.52 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=18.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 008633 343 VISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLK 384 (558)
Q Consensus 343 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 384 (558)
++..+...+.......+++.+...+ ..+...++.+|..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3444444444444444444444443 2334444444444444
No 231
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.25 E-value=0.17 Score=45.99 Aligned_cols=102 Identities=20% Similarity=0.270 Sum_probs=72.0
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh----------------CCHHH
Q 008633 158 NVAKDVKSYNVIVKALGRR-----KFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRA----------------GQVYK 216 (558)
Q Consensus 158 ~~~~~~~~~~~li~~~~~~-----~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~----------------g~~~~ 216 (558)
+-..|-.+|-.++..+... +.++-.-..++.|.+-|+.-|..+|+.|++.+-+. .+-+-
T Consensus 62 ~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C 141 (406)
T KOG3941|consen 62 PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNC 141 (406)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhH
Confidence 3456777788887777543 45666667788888999999999999998776443 22344
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-hHHHHHHHHh
Q 008633 217 AIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHV-GAASSLFNSM 259 (558)
Q Consensus 217 A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~-~~A~~~~~~m 259 (558)
+++++++|...|+.||-++-..|++++.+.+-. .+..++.-.|
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 678888888888888888888888888776642 3344444444
No 232
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.07 E-value=0.86 Score=45.86 Aligned_cols=57 Identities=9% Similarity=0.165 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 336 DTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDR 401 (558)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (558)
+...|..|.+...+.|+++-|++.|.+..+ |..|+-.|.-.|+.+.-.++.+.....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 334455555555555555555555444432 334444444444444444444443333
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.06 E-value=0.79 Score=45.21 Aligned_cols=65 Identities=12% Similarity=-0.023 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008633 232 DAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNV---MTYNIVISGWSKLGQVVEMERVLKEIVAE 296 (558)
Q Consensus 232 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 296 (558)
+...++.+..+|.+.|++++|+..|++..+..|-+. .+|..+..+|.+.|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455666666666666666666666666554333333 23666666666666666666666666553
No 234
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.01 E-value=1.5 Score=36.26 Aligned_cols=41 Identities=10% Similarity=0.066 Sum_probs=18.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008633 204 VMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQ 245 (558)
Q Consensus 204 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 245 (558)
++..+...+.......+++.+.+.+. .+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 44444444444444444444444432 334444444444443
No 235
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.98 E-value=2.6 Score=37.76 Aligned_cols=223 Identities=19% Similarity=0.178 Sum_probs=108.7
Q ss_pred CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 281 GQVVEMERVLKEIVAEGFSP-DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEK-GCGPDTNAYNAVISNYISVGDFDECMK 358 (558)
Q Consensus 281 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~ 358 (558)
+....+...+.......... ....+......+...+.+..+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 45555555555555432211 2455555666666666666666666665542 222244455555666666666666666
Q ss_pred HHHHhhhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008633 359 YYKGMSSYNCEPNMDTYTRLIS-GLLKSRKVADALEVFEEMLDRGI--VPSTGTITSFLEPLCSYGPPHAAMMMYKKARK 435 (558)
Q Consensus 359 ~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (558)
.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+....+
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666666543222 112222222 55666666666666666644211 01222222233333445555555555555554
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 436 VGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSD-GEIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 436 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
.........+..+...+...+..+.|...+....... |+ ...+..+...+...|..+++...+.+....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3211134445555555555555555555555555431 22 223333333333444555555555555443
No 236
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.97 E-value=3.3 Score=39.04 Aligned_cols=62 Identities=13% Similarity=0.196 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 339 AYNAVISNYISVGDF---DECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDR 401 (558)
Q Consensus 339 ~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (558)
+...++.+|...+.. ++|.++++.+.... .-....+..-+..+.+.++.+++.+++.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 455566666665543 34444555554331 112334444455555566677777777777664
No 237
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=0.87 Score=42.60 Aligned_cols=155 Identities=10% Similarity=-0.006 Sum_probs=106.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHh
Q 008633 174 GRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDF---GLKFDAESLNVVLWCLCQRLHVG 250 (558)
Q Consensus 174 ~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~---g~~~~~~~~~~ll~~~~~~~~~~ 250 (558)
--+|++.+|-..++++.+. .+.|..++...=.+|.-.|+...-...++++... +++...++-..+.-++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3567788888888888776 4567778888888888899988888888888743 23323344445555667789999
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 251 AASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE---GFSPDSLTFSFLIEGLGRAGRIDDAIEVFDT 327 (558)
Q Consensus 251 ~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 327 (558)
+|++.-++.-+-.+.|..+-.++...+--.|++.++.+++.+-... +--.-..-|=...-.+...+.++.|+++|+.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 9998888877767778888888888888899999988876654321 0000111122222334455888888888876
Q ss_pred HH
Q 008633 328 MK 329 (558)
Q Consensus 328 m~ 329 (558)
-+
T Consensus 273 ei 274 (491)
T KOG2610|consen 273 EI 274 (491)
T ss_pred HH
Confidence 43
No 238
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.90 E-value=2.9 Score=37.97 Aligned_cols=177 Identities=14% Similarity=0.155 Sum_probs=99.3
Q ss_pred HHhcCCHHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----
Q 008633 347 YISVGDFDECMKYYKGMSSYN--CEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSY---- 420 (558)
Q Consensus 347 ~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---- 420 (558)
-.+.|++++|.+.|+.+.... -+-...+--.++.++.+.+++++|+..+++....-......-|...|.+++..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 346778888888888777542 11233445556677778888888888888777653322333344444444421
Q ss_pred ---CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 008633 421 ---GPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAV 497 (558)
Q Consensus 421 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 497 (558)
.+...+.+.+..+.+ ++.-|=...-...|......+... =...=..+...|.+.|.+..|.
T Consensus 124 ~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 124 DVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred ccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcChHHHH
Confidence 222223333322222 111111111112222222211110 0001123456788999999999
Q ss_pred HHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 498 LVMEESLRKGFCPS----RLVYSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 498 ~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
.-+++|++. .|+ ...+..+.++|.+.|..++|.+.-+-+...
T Consensus 188 nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 188 NRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 999999987 233 456677888999999999999887777643
No 239
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.89 E-value=0.34 Score=47.65 Aligned_cols=66 Identities=12% Similarity=0.056 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHhhcC
Q 008633 195 NPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDA----ESLNVVLWCLCQRLHVGAASSLFNSMKGK 262 (558)
Q Consensus 195 ~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 262 (558)
+.+...++.+..+|.+.|++++|+..|++..+.. |+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4568899999999999999999999999998864 442 46899999999999999999999998764
No 240
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.87 E-value=0.83 Score=42.72 Aligned_cols=153 Identities=8% Similarity=0.008 Sum_probs=88.3
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHH--HHHHHHHHhcCChh
Q 008633 349 SVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPST--GTI--TSFLEPLCSYGPPH 424 (558)
Q Consensus 349 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~--~~ll~~~~~~g~~~ 424 (558)
-.|+..+|-..++++.+. .+.|...+.--=.+|.-+|+.+.-...++++... ..+|. ..| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 456777777777777654 3566677777777777777777777777776654 12222 222 22222334567777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 008633 425 AAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQES---GYPSDGEIYEYVIAGLCNIGQLENAVLVME 501 (558)
Q Consensus 425 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 501 (558)
+|++.-++..+.+ +.|.-.-.+....+...|+..++.++..+-.+. +--.-..-|....-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 7777776666654 445555555666666777777777766554421 100011223333334445577777777777
Q ss_pred HHH
Q 008633 502 ESL 504 (558)
Q Consensus 502 ~m~ 504 (558)
+=+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 644
No 241
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.76 E-value=0.69 Score=46.55 Aligned_cols=134 Identities=13% Similarity=0.128 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 008633 198 LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGW 277 (558)
Q Consensus 198 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~ 277 (558)
..-...+++.+-+.|..+.|+++...-. .-.+...+.|+++.|.++.++.. +...|..|.+..
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~~-----~~~~W~~Lg~~A 357 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKELD-----DPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCCS-----THHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhcC-----cHHHHHHHHHHH
Confidence 3445566666666666666666543211 12344455666666665543332 455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 278 SKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECM 357 (558)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 357 (558)
.+.|+++-|.+.|.+... +..|+-.|.-.|+.+...++.+.....|- ++....++.-.|+.++..
T Consensus 358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECV 422 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHH
Confidence 666666666666655432 33444455556666666666655555542 344444455556666666
Q ss_pred HHHHHh
Q 008633 358 KYYKGM 363 (558)
Q Consensus 358 ~~~~~m 363 (558)
+++.+.
T Consensus 423 ~lL~~~ 428 (443)
T PF04053_consen 423 DLLIET 428 (443)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 655544
No 242
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.75 E-value=0.87 Score=41.60 Aligned_cols=88 Identities=13% Similarity=0.118 Sum_probs=37.8
Q ss_pred hcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCCHh
Q 008633 419 SYGPPHAAMMMYKKARKVG--CKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQES-GYPSD-GEIYEYVIAGLCNIGQLE 494 (558)
Q Consensus 419 ~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~-~~~~~~li~~~~~~g~~~ 494 (558)
+.|++..|.+.|...++.. -......+-.|..++...|++++|..+|..+.+. +-.|. +..+--|.....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 3344444444444444421 1112333444445555555555555544444431 11111 133444444444555555
Q ss_pred HHHHHHHHHHhC
Q 008633 495 NAVLVMEESLRK 506 (558)
Q Consensus 495 ~A~~~~~~m~~~ 506 (558)
+|+..|++..+.
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 243
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.74 E-value=3.9 Score=38.77 Aligned_cols=129 Identities=17% Similarity=0.287 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC-
Q 008633 283 VVEMERVLKEIVAEGFSPDSLTFSFLIEGLGR--AG----RIDDAIEVFDTMKEKGC---GPDTNAYNAVISNYISVGD- 352 (558)
Q Consensus 283 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~g----~~~~a~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~- 352 (558)
+++...+++.|.+.|+.-+..+|.+..-.... .. ...++..+|+.|++... .++...+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556777888888888777776653333322 22 34557778888877643 2334445545433 2222
Q ss_pred ---HHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008633 353 ---FDECMKYYKGMSSYNCEPNMD-TYTRLISGLLKSR---KVADALEVFEEMLDRGIVPSTGTITSF 413 (558)
Q Consensus 353 ---~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~l 413 (558)
.+.++.+|+.+.+.|...+.. -+.+-|-+++... ....+.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 355666777777766554332 2222222222211 134566677777777776666555544
No 244
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.70 E-value=6.2 Score=40.92 Aligned_cols=189 Identities=13% Similarity=0.184 Sum_probs=105.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHhHHH
Q 008633 176 RKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGL--KFDAESLNVVLWCLCQRLHVGAAS 253 (558)
Q Consensus 176 ~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~~~~~~A~ 253 (558)
-|++++|.+++-+|.++.+ .|..+.+.|++-...++++.--. +. +.-...++.+...++....|++|.
T Consensus 747 ~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~ 816 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAA 816 (1189)
T ss_pred hcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999988876632 45666777888777776643110 10 011346777777777777788887
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008633 254 SLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGC 333 (558)
Q Consensus 254 ~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 333 (558)
+.|..-... ...+.++.+...+++.+.+-+.+. -+....-.+..++.+.|.-++|.+.|-+ .+.
T Consensus 817 ~yY~~~~~~--------e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~ 880 (1189)
T KOG2041|consen 817 KYYSYCGDT--------ENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLR---RSL 880 (1189)
T ss_pred HHHHhccch--------HhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHh---ccC
Confidence 777654321 124455555555555444444332 2344445556666666666666655432 221
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 334 GPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTY--------------TRLISGLLKSRKVADALEVFEEML 399 (558)
Q Consensus 334 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m~ 399 (558)
+ ...+..|...++|.+|.++-+... -|.+.+. .--|..+-++|++-+|.+++.+|.
T Consensus 881 p------kaAv~tCv~LnQW~~avelaq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 881 P------KAAVHTCVELNQWGEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred c------HHHHHHHHHHHHHHHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence 1 123445555566666666555433 2222221 112445566777777777776664
Q ss_pred H
Q 008633 400 D 400 (558)
Q Consensus 400 ~ 400 (558)
+
T Consensus 951 e 951 (1189)
T KOG2041|consen 951 E 951 (1189)
T ss_pred H
Confidence 3
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=3.9 Score=37.91 Aligned_cols=56 Identities=18% Similarity=0.200 Sum_probs=34.7
Q ss_pred HHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcC
Q 008633 206 DSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGK 262 (558)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 262 (558)
......|++.+|..+|......... +...--.+..+|...|+.+.|..++..+...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 3445667777777777766654322 3445556666677777777777777666543
No 246
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.46 E-value=7.5 Score=41.33 Aligned_cols=110 Identities=17% Similarity=0.211 Sum_probs=69.6
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhH
Q 008633 172 ALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGA 251 (558)
Q Consensus 172 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~ 251 (558)
.+-+.|++++|..-|-+-... +.| .-+|.-|....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.+.
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHH
Confidence 344789999998877665432 233 23556666677777777888888888866 55566778888988888887
Q ss_pred HHHHHHHhhcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 008633 252 ASSLFNSMKGK-VLFNVMTYNIVISGWSKLGQVVEMERVLK 291 (558)
Q Consensus 252 A~~~~~~m~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 291 (558)
-.++.+....+ ...| ....+..+.+.+-.++|..+-.
T Consensus 450 L~efI~~~~~g~~~fd---~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 450 LTEFISKCDKGEWFFD---VETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHhcCCCcceeee---HHHHHHHHHHhChHHHHHHHHH
Confidence 77776655432 1111 2344555555555555554433
No 247
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=0.7 Score=44.53 Aligned_cols=62 Identities=13% Similarity=0.010 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEK 331 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 331 (558)
+++.+.-++.+.+++.+|+..-.+.+..+ ++|+...---..++...|+++.|+..|+++.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 44555555555555555555555555443 234444444444555555555555555555544
No 248
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.38 E-value=1.6 Score=35.90 Aligned_cols=78 Identities=8% Similarity=-0.008 Sum_probs=53.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008633 169 IVKALGRRKFFDFMCNVLSDMAKEG--VNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQR 246 (558)
Q Consensus 169 li~~~~~~~~~~~a~~l~~~m~~~g--~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 246 (558)
-.....+.|++++|.+.|+.+..+- .+-...+-..++.++.+.|++++|...+++.++....-....|...+.+++.-
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 3444557889999999999888762 12244567778888889999999999998888765443334455555555443
No 249
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.35 E-value=1.8 Score=45.62 Aligned_cols=49 Identities=16% Similarity=0.369 Sum_probs=23.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 313 GRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKG 362 (558)
Q Consensus 313 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 362 (558)
..+.++.+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 3334444444445555555544 333444455555555555554444443
No 250
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.24 E-value=3 Score=39.59 Aligned_cols=227 Identities=15% Similarity=0.121 Sum_probs=102.2
Q ss_pred HhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhc
Q 008633 278 SKLGQVVEMERVLKEIVAE--GFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEK--GCGPD---TNAYNAVISNYISV 350 (558)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~p~---~~~~~~li~~~~~~ 350 (558)
....+.++|+..+.+-... ...--..+|..+..+.++.|.+++++..--.-+.. ...-. -..|-.+.+++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777666665542 11112345666666667777666654432111110 01101 12334444444444
Q ss_pred CCHHHHHHHHHHhhhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHhcC
Q 008633 351 GDFDECMKYYKGMSSY-NCEP---NMDTYTRLISGLLKSRKVADALEVFEEMLDRGI---VP--STGTITSFLEPLCSYG 421 (558)
Q Consensus 351 g~~~~A~~~~~~m~~~-~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p--~~~~~~~ll~~~~~~g 421 (558)
.++.+++.+-..-... |..| -.....++..++...+.++++++.|+...+.-. .| ....+..+-..+....
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 4555555544433321 1111 112233455555566666666666666544211 11 1234555555556666
Q ss_pred ChhHHHHHHHHHHH----cCCCCCHHHH-----HHHHHHHHcCCChhHHHHHHHHHH----HCCCCCC-HHHHHHHHHHH
Q 008633 422 PPHAAMMMYKKARK----VGCKLSLTAY-----KLLLRRLSGFGKCGMLLDLWHEMQ----ESGYPSD-GEIYEYVIAGL 487 (558)
Q Consensus 422 ~~~~a~~~~~~~~~----~~~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~----~~~~~p~-~~~~~~li~~~ 487 (558)
++++|.-+..++.+ .++..-..-| ..+.-++-..|....|.+..++.. ..|-.+. ......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 66666655544433 1211111111 122334455566655555555443 2331111 11223444555
Q ss_pred HhcCCHhHHHHHHHHHH
Q 008633 488 CNIGQLENAVLVMEESL 504 (558)
Q Consensus 488 ~~~g~~~~A~~~~~~m~ 504 (558)
...|+.+.|..-|+++.
T Consensus 257 R~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAM 273 (518)
T ss_pred HhcccHhHHHHHHHHHH
Confidence 56666666666665554
No 251
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.16 E-value=1.6 Score=43.39 Aligned_cols=84 Identities=13% Similarity=0.168 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--HHHHHHH
Q 008633 442 LTAYKLLLRRLSGFGKCGMLLDLWHEMQES-GYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS--RLVYSKL 518 (558)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l 518 (558)
..+-..+..++.+.|+.++|++.+++|.+. ....+..+...|+.++...+.+.++..++.+.-+... |. ...|+..
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-pkSAti~YTaA 337 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-PKSATICYTAA 337 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-CchHHHHHHHH
Confidence 333345666777889999999999988753 2222445778899999999999999999988754332 33 3455554
Q ss_pred HHHHHhcC
Q 008633 519 SNKLLASN 526 (558)
Q Consensus 519 ~~~~~~~g 526 (558)
+-.+...|
T Consensus 338 LLkaRav~ 345 (539)
T PF04184_consen 338 LLKARAVG 345 (539)
T ss_pred HHHHHhhc
Confidence 44444343
No 252
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.11 E-value=4.4 Score=36.81 Aligned_cols=81 Identities=9% Similarity=0.027 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008633 163 VKSYNVIVKALGRRKFFDFMCNVLSDMAKEG--VNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVL 240 (558)
Q Consensus 163 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g--~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 240 (558)
...|+.-+. -.+.|++++|.+.|+.+..+. -+-...+...++-++-+.++.+.|+..+++..+.-..-....|..-|
T Consensus 35 ~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 344554444 457899999999999998763 22345567777778888899999998888877643333334455555
Q ss_pred HHHH
Q 008633 241 WCLC 244 (558)
Q Consensus 241 ~~~~ 244 (558)
.+++
T Consensus 114 kgLs 117 (254)
T COG4105 114 KGLS 117 (254)
T ss_pred HHHH
Confidence 5554
No 253
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.93 E-value=1.2 Score=35.52 Aligned_cols=90 Identities=18% Similarity=0.059 Sum_probs=53.6
Q ss_pred HHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCH---HHHHHHHHHHHhcCC
Q 008633 242 CLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE-GFSPDS---LTFSFLIEGLGRAGR 317 (558)
Q Consensus 242 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~---~t~~~ll~~~~~~g~ 317 (558)
+++..|+++.|++.|.+...-.|.+...||.-..++.-.|+.++|++-+++..+. |-+ +. ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 3455666666666666665555556667777777777777777777766666653 222 21 223333334555667
Q ss_pred HHHHHHHHHHHHHCC
Q 008633 318 IDDAIEVFDTMKEKG 332 (558)
Q Consensus 318 ~~~a~~~~~~m~~~g 332 (558)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777776666666555
No 254
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.88 E-value=4.5 Score=36.08 Aligned_cols=166 Identities=19% Similarity=0.162 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008633 233 AESLNVVLWCLCQRLHVGAASSLFNSMKG--KVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIE 310 (558)
Q Consensus 233 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 310 (558)
...+......+...+.+..+...+..... ..+.....+......+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 34444455555555555555555554433 223344444555555555555555555555555432222 111111111
Q ss_pred -HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHhcC
Q 008633 311 -GLGRAGRIDDAIEVFDTMKEKGC--GPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEP-NMDTYTRLISGLLKSR 386 (558)
Q Consensus 311 -~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g 386 (558)
.+...|+++.+...+.+...... ......+......+...++.+.|...+....... .. ....+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcc
Confidence 44555555555555555533211 0122222223333444455555555555554432 11 2333444444444444
Q ss_pred CHHHHHHHHHHHHH
Q 008633 387 KVADALEVFEEMLD 400 (558)
Q Consensus 387 ~~~~A~~~~~~m~~ 400 (558)
+++.|...+.....
T Consensus 217 ~~~~a~~~~~~~~~ 230 (291)
T COG0457 217 KYEEALEYYEKALE 230 (291)
T ss_pred cHHHHHHHHHHHHh
Confidence 44444444444443
No 255
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.87 E-value=0.096 Score=33.29 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 479 IYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
+|..+...|...|++++|.++++++++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544
No 256
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.79 E-value=7.2 Score=38.13 Aligned_cols=55 Identities=20% Similarity=0.267 Sum_probs=33.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 273 VISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEK 331 (558)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 331 (558)
.+.+.-+.|+++...+........ .++...|.++... +.++.+++....+.+...
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~ 58 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQL 58 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHH
Confidence 356677788888855555444322 2344444444433 778888888877776543
No 257
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.67 E-value=1.7 Score=39.77 Aligned_cols=99 Identities=14% Similarity=0.158 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCCCC-HHHHHH
Q 008633 443 TAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPS---DGEIYEYVIAGLCNIGQLENAVLVMEESLRK-GFCPS-RLVYSK 517 (558)
Q Consensus 443 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-~~~~~~ 517 (558)
..|+.-+.. .+.|++..|...|...++.. +- ....+-.|..++...|++++|..+|..+.+. +-.|. +..+..
T Consensus 143 ~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 143 KLYNAALDL-YKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 367776664 46677999999999998742 11 1235666899999999999999999999875 11222 588999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcC
Q 008633 518 LSNKLLASNKLESAYNLFRKIKIARQ 543 (558)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~m~~~~~ 543 (558)
|.....+.|+.++|...|+++.+.-.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999986433
No 258
>PRK11906 transcriptional regulator; Provisional
Probab=93.29 E-value=7.8 Score=38.59 Aligned_cols=108 Identities=12% Similarity=0.157 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 008633 424 HAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEES 503 (558)
Q Consensus 424 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 503 (558)
.+|.++-++..+.+ +.|......+..++...++++.|...|++....+ +....+|......+.-.|+.++|.+.+++.
T Consensus 321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555556666654 4566666666666667777888888888877653 223446666666667788888888888887
Q ss_pred HhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 504 LRKGFCPS---RLVYSKLSNKLLASNKLESAYNLFR 536 (558)
Q Consensus 504 ~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~ 536 (558)
++. .|. ..+....++.|+.++ .++|..++-
T Consensus 399 lrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 399 LQL--EPRRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred hcc--CchhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 754 354 233444444565554 355555543
No 259
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.09 E-value=2.4 Score=33.98 Aligned_cols=90 Identities=17% Similarity=0.072 Sum_probs=40.9
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCH
Q 008633 417 LCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDG---EIYEYVIAGLCNIGQL 493 (558)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~ 493 (558)
....|+.+.|++.|.+....- +-....||.-.+++.-+|+.++|++-+++..+..-.-.. ..|..-...|...|+-
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344455555555555544421 233445555555555555555555555554442101111 1222223334445555
Q ss_pred hHHHHHHHHHHhCC
Q 008633 494 ENAVLVMEESLRKG 507 (558)
Q Consensus 494 ~~A~~~~~~m~~~g 507 (558)
+.|..-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 55555555555444
No 260
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.05 E-value=1.1 Score=41.56 Aligned_cols=78 Identities=12% Similarity=0.082 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 008633 234 ESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVA-----EGFSPDSLTFSFL 308 (558)
Q Consensus 234 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~l 308 (558)
.++..++..+...|+.+.+.+.++++....|-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 35556677777788888888888888777777888888888888888888888888887765 3666766655544
Q ss_pred HHH
Q 008633 309 IEG 311 (558)
Q Consensus 309 l~~ 311 (558)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 261
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.97 E-value=14 Score=38.88 Aligned_cols=15 Identities=7% Similarity=0.133 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHCC
Q 008633 458 CGMLLDLWHEMQESG 472 (558)
Q Consensus 458 ~~~A~~~~~~m~~~~ 472 (558)
+..|.++++...+.+
T Consensus 525 ~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 525 LHLAKRYYDQASEED 539 (552)
T ss_pred hHHHHHHHHHHHhcC
Confidence 567777777776643
No 262
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.82 E-value=1.4 Score=40.82 Aligned_cols=78 Identities=17% Similarity=0.292 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 008633 338 NAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLD-----RGIVPSTGTITS 412 (558)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~ 412 (558)
.++..++..+...|+.+.+.+.++++.... +-+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 356667777777888888888888777664 55777788888888888888888887777654 466666655554
Q ss_pred HHHH
Q 008633 413 FLEP 416 (558)
Q Consensus 413 ll~~ 416 (558)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
No 263
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.74 E-value=3.8 Score=37.96 Aligned_cols=64 Identities=5% Similarity=-0.030 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 008633 194 VNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDF-GLKFDAESLNVVLWCLCQRLHVGAASSLFN 257 (558)
Q Consensus 194 ~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~ 257 (558)
-.++..+...++..+++.+++.+-.++++..... +..-|...|...|+...+.|+..-...+.+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 3455555555666666666666666665555433 444455556666666666666555555554
No 264
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.65 E-value=5.8 Score=33.77 Aligned_cols=51 Identities=16% Similarity=0.420 Sum_probs=27.5
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 008633 357 MKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTIT 411 (558)
Q Consensus 357 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 411 (558)
.++++.+.+.+++|+...|..+|+.+.+.|++. .+.++...++-+|.....
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA 64 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLA 64 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHH
Confidence 445555555566666666666666666666544 333444445555544433
No 265
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.63 E-value=11 Score=37.07 Aligned_cols=79 Identities=11% Similarity=0.114 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVV 239 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 239 (558)
+-|..+|-.||.-+...+.+++..+++++|..- .+--..+|..-+++=....++.....+|.+..+..+. ...|...
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHHHH
Confidence 457788888888888888888888888888654 2223456666676666667778888888777765433 3344443
Q ss_pred HH
Q 008633 240 LW 241 (558)
Q Consensus 240 l~ 241 (558)
+.
T Consensus 116 l~ 117 (660)
T COG5107 116 LE 117 (660)
T ss_pred HH
Confidence 33
No 266
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.61 E-value=5.9 Score=33.75 Aligned_cols=132 Identities=16% Similarity=0.103 Sum_probs=66.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC--ChhHHHHHHHHHHH
Q 008633 393 EVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFG--KCGMLLDLWHEMQE 470 (558)
Q Consensus 393 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~ 470 (558)
+.++.+.+.++.|+...+..+++.+.+.|++....+ +...++-+|.......+-.+.... -.+-|++++.++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh
Confidence 344445566677777777777777777766544433 333444444433333322121111 02223333333321
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 471 SGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 471 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
.+..++..+...|++-+|+++.+..... +......++++..+.++...-..+++-..+
T Consensus 91 --------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 --------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred --------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3555666677777777777777654221 111223455666666666555555554443
No 267
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.48 E-value=16 Score=38.40 Aligned_cols=47 Identities=11% Similarity=0.049 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHhHHHHHHHHHHhCC
Q 008633 458 CGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNI----GQLENAVLVMEESLRKG 507 (558)
Q Consensus 458 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g 507 (558)
...+...+......| +......+...|... .+.+.|...+.....++
T Consensus 455 ~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred hhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 344444555444433 333344444433322 23555666665555443
No 268
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.43 E-value=10 Score=36.03 Aligned_cols=131 Identities=15% Similarity=0.197 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCh
Q 008633 353 FDECMKYYKGMSSYNCEPNMDTYTRLISGLLK--SR----KVADALEVFEEMLDRGI---VPSTGTITSFLEPLCSYGPP 423 (558)
Q Consensus 353 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~g~~ 423 (558)
+++...+++.|.+.|...+..+|-+....... .. ....|..+++.|++... .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44556677777777777666655543222222 12 34456777777776532 2344455555432 22222
Q ss_pred ----hHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHcCCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008633 424 ----HAAMMMYKKARKVGCKLSL--TAYKLLLRRLSGFGK--CGMLLDLWHEMQESGYPSDGEIYEYVIA 485 (558)
Q Consensus 424 ----~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~li~ 485 (558)
+.++.+|+.+.+.|+..+- .....++........ +..+.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 3455566666665554432 233333322222211 3355666677777776666655554443
No 269
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.42 E-value=3.3 Score=39.39 Aligned_cols=166 Identities=15% Similarity=0.125 Sum_probs=88.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHH
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKEIVAE-GFSP---DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGC-----GPDTNA 339 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-----~p~~~~ 339 (558)
+|-.+.+++-+..++.+++.+-..-... |..| ......++..++...+.++++++.|+...+-.. .....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4555555555555555555554443321 2222 112233455666666777777777776654311 112346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHH----CCCCCC
Q 008633 340 YNAVISNYISVGDFDECMKYYKGMSS----YNCEPNMDTYTR-----LISGLLKSRKVADALEVFEEMLD----RGIVPS 406 (558)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~----~~~~p~ 406 (558)
|..|...|.+..|+++|.-+..+..+ .++.--..-|.. |.-++-..|...+|.+.-++..+ .|-.+.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 77777788888888877766655432 221111122322 33345566777666666665433 232221
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008633 407 -TGTITSFLEPLCSYGPPHAAMMMYKKAR 434 (558)
Q Consensus 407 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (558)
......+.+.|...|+.+.|+.-|+.+.
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2334556666777788887777776543
No 270
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.42 E-value=8 Score=34.84 Aligned_cols=208 Identities=13% Similarity=0.070 Sum_probs=107.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008633 162 DVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLW 241 (558)
Q Consensus 162 ~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 241 (558)
-...|..-..+|...+++++|...+.+..+- ..-+..-|+ . ....+.|.-+.+++.+. .--+..|+--..
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-A------AKayEqaamLake~~kl--sEvvdl~eKAs~ 99 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-A------AKAYEQAAMLAKELSKL--SEVVDLYEKASE 99 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-H------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHH
Confidence 3455777777788888888888877766532 122222222 1 22335555555555542 112344566667
Q ss_pred HHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---C--CCCCHHHHHHHHHHHHhcC
Q 008633 242 CLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE---G--FSPDSLTFSFLIEGLGRAG 316 (558)
Q Consensus 242 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g--~~p~~~t~~~ll~~~~~~g 316 (558)
+|..+|..+.|-..+++.-.- .+..++++|+++|.+...- + .+.-...|...-+.+.+..
T Consensus 100 lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 778888877776666654321 1223455555555544321 1 0111223444455566666
Q ss_pred CHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CCCCHHHHHHHHHHHHhcCCH
Q 008633 317 RIDDAIEVFDTMKEK----GCGPDT-NAYNAVISNYISVGDFDECMKYYKGMSSYN---CEPNMDTYTRLISGLLKSRKV 388 (558)
Q Consensus 317 ~~~~a~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~ 388 (558)
++++|-..+.+-... .--++. ..|...|-.|.-..++..|.+.++.--+.+ -.-+..+...|+.+| ..|+.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCH
Confidence 666655444332111 111111 234445555666677778888877744322 223455666666665 45666
Q ss_pred HHHHHHH
Q 008633 389 ADALEVF 395 (558)
Q Consensus 389 ~~A~~~~ 395 (558)
+++..++
T Consensus 244 E~~~kvl 250 (308)
T KOG1585|consen 244 EEIKKVL 250 (308)
T ss_pred HHHHHHH
Confidence 6655543
No 271
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.35 E-value=6 Score=33.25 Aligned_cols=52 Identities=12% Similarity=-0.107 Sum_probs=24.1
Q ss_pred hcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008633 245 QRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE 296 (558)
Q Consensus 245 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 296 (558)
+.++.+++..+++.+.---|-....-..-...+.+.|++.+|..+|+++...
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3445555555555554322222222222233344556666666666665443
No 272
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.31 E-value=0.36 Score=30.60 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=6.9
Q ss_pred HHHHHhCCHHHHHHHHHHH
Q 008633 206 DSFIRAGQVYKAIQMLGRL 224 (558)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~~ 224 (558)
..|.+.|++++|+++|+++
T Consensus 9 ~~~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 9 RAYRRLGQPDEAERLLRRA 27 (44)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 3333333333333333333
No 273
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.16 E-value=10 Score=35.35 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=28.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 312 LGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 312 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
....|++.+|..+|+........ +...--.+..+|...|+.+.|..++..+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 34455555666655555544333 233444455666666666666666665543
No 274
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.12 E-value=0.26 Score=29.65 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 515 YSKLSNKLLASNKLESAYNLFRKI 538 (558)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~m 538 (558)
|..|.+.|.+.|++++|++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555666666666666666553
No 275
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.04 E-value=15 Score=36.98 Aligned_cols=159 Identities=12% Similarity=0.059 Sum_probs=87.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 309 IEGLGRAGRIDDAIEVFDTMKEKGCGPD-TNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRK 387 (558)
Q Consensus 309 l~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 387 (558)
|.-.-+..+...-.+.-.+..+. .|+ ...|.. -+--.+..+.+|+++|++..+.| ...+ +...
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei--~pdCAdAYIL--LAEEeA~Ti~Eae~l~rqAvkAg----E~~l--------g~s~ 238 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEI--NPDCADAYIL--LAEEEASTIVEAEELLRQAVKAG----EASL--------GKSQ 238 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhh--cccccccCHHHHHHHHHHHHHHH----HHhh--------chhh
Confidence 33334455555555555555554 222 122222 22223556888888888877643 1111 0000
Q ss_pred HHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 008633 388 VADAL-EVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVG-CKLSLTAYKLLLRRLSGFGKCGMLLDLW 465 (558)
Q Consensus 388 ~~~A~-~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~ 465 (558)
..+.. ..++.+......+-...-..+..++-+.|+.++|++.++++.+.. ..........|+.++...+.+.++..++
T Consensus 239 ~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 239 FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred hhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 00000 111112222222222233445556667899999999999998753 2234567788999999999999999999
Q ss_pred HHHHHCCCCCCHH--HHHHHH
Q 008633 466 HEMQESGYPSDGE--IYEYVI 484 (558)
Q Consensus 466 ~~m~~~~~~p~~~--~~~~li 484 (558)
.+-.+... |... +|+..+
T Consensus 319 ~kYdDi~l-pkSAti~YTaAL 338 (539)
T PF04184_consen 319 AKYDDISL-PKSATICYTAAL 338 (539)
T ss_pred HHhccccC-CchHHHHHHHHH
Confidence 98765433 3333 455544
No 276
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.20 E-value=11 Score=39.97 Aligned_cols=61 Identities=7% Similarity=-0.040 Sum_probs=38.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHhCCC
Q 008633 168 VIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQ-------VYKAIQMLGRLEDFGL 229 (558)
Q Consensus 168 ~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~-------~~~A~~~~~~~~~~g~ 229 (558)
.+|-.|.|.|.+++|.++..+.... .......+...+..++...+ -++...-|.+..+...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 5677888999999999999666554 34445667777777766432 2345555666555433
No 277
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.06 E-value=30 Score=38.67 Aligned_cols=79 Identities=24% Similarity=0.333 Sum_probs=40.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008633 344 ISNYISVGDFDECMKYYKGMSSYNCEPNMD--TYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYG 421 (558)
Q Consensus 344 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 421 (558)
+.+|..+|+|.+|+.+-.++.. ..+.. +-..|+.-+...++.-+|-++..+.... |. -.+..+|+..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~-----~av~ll~ka~ 1040 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PE-----EAVALLCKAK 1040 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HH-----HHHHHHhhHh
Confidence 4455555555555555555542 11211 1245556666666666666666655432 11 2233455666
Q ss_pred ChhHHHHHHHHH
Q 008633 422 PPHAAMMMYKKA 433 (558)
Q Consensus 422 ~~~~a~~~~~~~ 433 (558)
.+++|.++....
T Consensus 1041 ~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1041 EWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHHhc
Confidence 666666655443
No 278
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.90 E-value=5.1 Score=34.74 Aligned_cols=60 Identities=12% Similarity=0.034 Sum_probs=30.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDS--LTFSFLIEGLGRAGRIDDAIEVFDTM 328 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m 328 (558)
.+..+...|++.|+.++|.+.|.++.+....+.. ..+-.+|+...-.+++..+.....+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4455555566666666666666655554322221 23444555555555555555554444
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.69 E-value=5.2 Score=34.69 Aligned_cols=63 Identities=10% Similarity=0.038 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 008633 164 KSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPD--LETLSIVMDSFIRAGQVYKAIQMLGRLED 226 (558)
Q Consensus 164 ~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~--~~t~~~li~~~~~~g~~~~A~~~~~~~~~ 226 (558)
..+..+.+.|.+.|+.+.|++.|.++......+. ...+-.+|+.....+++..+...+.++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4577777888888888888888888777643332 34566777777788888887777766653
No 280
>PRK11906 transcriptional regulator; Provisional
Probab=90.69 E-value=19 Score=35.91 Aligned_cols=132 Identities=11% Similarity=0.063 Sum_probs=72.9
Q ss_pred hhH--HHHHHHHHhcC-----CHHHHHHHHHHHHHc-CCCCCH-HHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 008633 268 MTY--NIVISGWSKLG-----QVVEMERVLKEIVAE-GFSPDS-LTFSFLIEGLGR---------AGRIDDAIEVFDTMK 329 (558)
Q Consensus 268 ~~~--~~li~~~~~~g-----~~~~A~~~~~~m~~~-g~~p~~-~t~~~ll~~~~~---------~g~~~~a~~~~~~m~ 329 (558)
..| ..++.+..... ..+.|+.+|.+.... .+.|+- ..|..+..++.. .....+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 55555554421 345667777777621 234442 333333222211 223445666666666
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 330 EKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDR 401 (558)
Q Consensus 330 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (558)
+.+.. |......+..+..-.++++.|...|++....+ +-...+|......+.-+|+.++|.+.+++..+.
T Consensus 332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 66544 66666666666666677777777777776653 222344444444555577777777777775553
No 281
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.55 E-value=15 Score=34.26 Aligned_cols=147 Identities=15% Similarity=0.184 Sum_probs=85.5
Q ss_pred CchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHH-hC-CHHHH
Q 008633 141 LSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAK-EGVNPDLETLSIVMDSFIR-AG-QVYKA 217 (558)
Q Consensus 141 ~~~~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~g~~~~~~t~~~li~~~~~-~g-~~~~A 217 (558)
...+....|++-+..+....+... |..|+. ++..+.+|+.+|+.... ..+--|..+...+++.... .+ ....-
T Consensus 110 Lt~~Dli~FL~~~i~~~~~~k~~~-Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~al 185 (292)
T PF13929_consen 110 LTKEDLISFLKLVIINLSSNKSFN-YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNAL 185 (292)
T ss_pred CcHHHHHHHHHHHHhccccccchH-HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhH
Confidence 334455566666554443333322 555443 34456677777774322 2344577777777777765 22 12222
Q ss_pred HHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 008633 218 IQMLGRLE-DFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGK--VLFNVMTYNIVISGWSKLGQVVEMERVLK 291 (558)
Q Consensus 218 ~~~~~~~~-~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 291 (558)
-++.+.+. ..|-.++..+...++..+++.+++..-.++.+..... ...|...|...|......|+..-+.++.+
T Consensus 186 YEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 186 YEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 23333333 3345667777777788888888888777777766443 33466778888888888887765555544
No 282
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.31 E-value=23 Score=36.23 Aligned_cols=162 Identities=10% Similarity=0.015 Sum_probs=89.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHh----cCCHhHHHHHHHHhhcCCCCChhhHH
Q 008633 202 SIVMDSFIRAGQVYKAIQMLGRLEDFG-LKFD-----AESLNVVLWCLCQ----RLHVGAASSLFNSMKGKVLFNVMTYN 271 (558)
Q Consensus 202 ~~li~~~~~~g~~~~A~~~~~~~~~~g-~~~~-----~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~ 271 (558)
..++...+=.|+-+.+++.+.+..+.+ +.-. .-.|+..+..++. ....+.|.++++.+..+.|-+....-
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 334445555677777777777665432 2111 1233344443333 34566777777777776664444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHH
Q 008633 272 IVISGWSKLGQVVEMERVLKEIVAEG---FSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAV-ISNY 347 (558)
Q Consensus 272 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-i~~~ 347 (558)
.-.+.+...|++++|++.|++..... .+.....+--+.-.+.-..++++|.+.|..+.+..-- +..+|.-+ ..++
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHH
Confidence 55566677777888888777655311 0112233344455566677788887777777765322 33333333 2334
Q ss_pred HhcCCH-------HHHHHHHHHhh
Q 008633 348 ISVGDF-------DECMKYYKGMS 364 (558)
Q Consensus 348 ~~~g~~-------~~A~~~~~~m~ 364 (558)
...|+. ++|.++|.+..
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHH
Confidence 455665 66666666554
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.21 E-value=0.72 Score=27.66 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008633 479 IYEYVIAGLCNIGQLENAVLVMEESL 504 (558)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (558)
+|..|...|.+.|++++|+.++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888899999999999998854
No 284
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.88 E-value=10 Score=31.30 Aligned_cols=55 Identities=11% Similarity=0.042 Sum_probs=34.7
Q ss_pred HHhcCCHhHHHHHHHHhhcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008633 243 LCQRLHVGAASSLFNSMKGKVLFNV---MTYNIVISGWSKLGQVVEMERVLKEIVAEG 297 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 297 (558)
..+.|++++|.+.|+.+..+.|.+. .+--.++.+|.+.+++++|...+++.++..
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3456667777777777666544433 334456677777777777777777776653
No 285
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.48 E-value=25 Score=35.39 Aligned_cols=179 Identities=12% Similarity=0.085 Sum_probs=124.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVL 240 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 240 (558)
.|-...-+++..++.+..+.-...+..+|..-| -+-..|..++..|... .-+.-..+++++.+..+. |++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 455667788999999999999999999999876 4677889999999888 556778889988886543 444444455
Q ss_pred HHHHhcCCHhHHHHHHHHhhcCCCC------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 008633 241 WCLCQRLHVGAASSLFNSMKGKVLF------NVMTYNIVISGWSKLGQVVEMERVLKEIVA-EGFSPDSLTFSFLIEGLG 313 (558)
Q Consensus 241 ~~~~~~~~~~~A~~~~~~m~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~ 313 (558)
..|- .++...+...|..+..++-| -...|..++..- ..+.+..+.+..+... .|...-.+.+.-+-.-|.
T Consensus 140 ~~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 5554 48888888888877544222 122465555532 2466777777666654 344455566677777788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008633 314 RAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNY 347 (558)
Q Consensus 314 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 347 (558)
...++++|.+++..+.+..-. |..+-..++..+
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred cccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 889999999999988776543 544444444433
No 286
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.35 E-value=7.4 Score=34.07 Aligned_cols=73 Identities=14% Similarity=-0.002 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 008633 180 DFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLED---FGLKFDAESLNVVLWCLCQRLHVGAAS 253 (558)
Q Consensus 180 ~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~---~g~~~~~~~~~~ll~~~~~~~~~~~A~ 253 (558)
++|.+.|-.+...+.--++.....+...|. ..+.+++++++....+ .+-.+|+..+.+|+..+.+.|+.+.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 566777777776665556666655555554 6678888888877664 233567777778888777777777664
No 287
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.25 E-value=12 Score=31.45 Aligned_cols=19 Identities=21% Similarity=0.566 Sum_probs=9.7
Q ss_pred HHhcCCHHHHHHHHHHhhh
Q 008633 347 YISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 347 ~~~~g~~~~A~~~~~~m~~ 365 (558)
+...|++.+|..+|+++.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3445555555555555443
No 288
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.77 E-value=31 Score=35.48 Aligned_cols=345 Identities=12% Similarity=0.088 Sum_probs=198.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLET-LSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVV 239 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t-~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 239 (558)
-+...|..+|.---.....+.+..+++.+... .|...- |......=.+.|..+.+.++|++.+. |++.+...|...
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 45666777777766666777888888888765 455553 44445555678999999999999885 466677777777
Q ss_pred HHHHHh-cCCHhHHHHHHHHhhcC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--
Q 008633 240 LWCLCQ-RLHVGAASSLFNSMKGK---VLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLG-- 313 (558)
Q Consensus 240 l~~~~~-~~~~~~A~~~~~~m~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-- 313 (558)
+..++. .|+.+.....|+....- .-.+...|...|.--...+++.....++++.++. ....|+..-.-|.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQL 195 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHH
Confidence 665554 46777788888877542 2235667888888888889999999999998874 2223333222221
Q ss_pred -hc------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH--HH-------HH
Q 008633 314 -RA------GRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMD--TY-------TR 377 (558)
Q Consensus 314 -~~------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~-------~~ 377 (558)
+. ...+++.++-....+. ..-...++ .+..+=..+...+.+-+.. .- ..
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~--~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~ 260 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAER-------------SKITHSQE--PLEELEIGVKDSTDPSKSLTEEKTILKRIVSI 260 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccC--hhHHHHHHHhhccCccchhhHHHHHHHHHHHH
Confidence 11 1222222222211111 00000011 1111111111111111110 11 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008633 378 LISGLLKSRKVADALEVFEEMLDR---GIVP----STGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLR 450 (558)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~m~~~---~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 450 (558)
.-..+-......+....+++-+.. .++| +..+|...+.--...|+.+.+.-+++++.-- +..-...|-..+.
T Consensus 261 ~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~ 339 (577)
T KOG1258|consen 261 HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYAR 339 (577)
T ss_pred HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHH
Confidence 112222333334444444444332 1222 3467888887777889999999988877541 1222344444555
Q ss_pred HHHcCCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 008633 451 RLSGFGKCGMLLDLWHEMQESGY--PSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNK 527 (558)
Q Consensus 451 ~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 527 (558)
-....|+.+-|..++....+.-+ .|......+.+ .-..|+++.|..+++...+. + |+ ...-..-+....+.|.
T Consensus 340 ~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~ 415 (577)
T KOG1258|consen 340 WMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGN 415 (577)
T ss_pred HHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcc
Confidence 55556888888888877765332 33333333333 33568999999999998876 3 66 3344444556677888
Q ss_pred HHHHH
Q 008633 528 LESAY 532 (558)
Q Consensus 528 ~~~A~ 532 (558)
.+.+.
T Consensus 416 ~~~~~ 420 (577)
T KOG1258|consen 416 LEDAN 420 (577)
T ss_pred hhhhh
Confidence 88877
No 289
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.54 E-value=3 Score=31.37 Aligned_cols=46 Identities=11% Similarity=0.161 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 008633 180 DFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLE 225 (558)
Q Consensus 180 ~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~ 225 (558)
-++.+-+..+....+.|++....+.+++|-+.+++..|+.+++-++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444445555555566666666666666666666666666666555
No 290
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.29 E-value=2.9 Score=31.87 Aligned_cols=43 Identities=12% Similarity=0.213 Sum_probs=19.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 008633 183 CNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLE 225 (558)
Q Consensus 183 ~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~ 225 (558)
.+-+..+....+.|++....+.+++|-+.+++..|+.+++-++
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333333344444555555555555555555555555555544
No 291
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.21 E-value=9.5 Score=35.71 Aligned_cols=100 Identities=11% Similarity=0.087 Sum_probs=47.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 008633 264 LFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEG---FSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAY 340 (558)
Q Consensus 264 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 340 (558)
+....+...++..-....+++.++..+-+++..- ..|+... .+.++.+. .-+.++++.++..=+.-|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchhhH
Confidence 3344444445554444555556655555554321 1111111 11222222 22344555555555555555566666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 341 NAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 341 ~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
+.+|+.+.+.+++.+|..+...|..
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6666666666665555555555443
No 292
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.00 E-value=16 Score=31.16 Aligned_cols=139 Identities=13% Similarity=0.107 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHH-HHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPD-LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAE-SLNV 238 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~-~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~ 238 (558)
.+...|..-++ +.+.+..++|+.-|.++.+.|...= +-..-.+.......|+...|+..|.++-+....|-.. -...
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 34455555444 3566778888888888888764321 1222333455667788888888888887654333332 1111
Q ss_pred H--HHHHHhcCCHhHHHHHHHHhhcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008633 239 V--LWCLCQRLHVGAASSLFNSMKGK-VLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSP 300 (558)
Q Consensus 239 l--l~~~~~~~~~~~A~~~~~~m~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 300 (558)
| ...+...|.++......+-+... .+.-...-..|.-+-.+.|++..|..+|..+......|
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 1 22355667777777766666443 33333445566667777788888888887777644333
No 293
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=87.81 E-value=31 Score=34.30 Aligned_cols=364 Identities=9% Similarity=0.030 Sum_probs=191.9
Q ss_pred hHHHHHHHHHHhcCCCCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCCHHHHHHHHH
Q 008633 143 GEAMVLFFNWAIKHPNVAK------------DVKSYNVIVKALGRRKFFDFMCNVLSDMAKEG----VNPDLETLSIVMD 206 (558)
Q Consensus 143 ~~~~~~ff~~~~~~~~~~~------------~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g----~~~~~~t~~~li~ 206 (558)
..+...+-.|..+..+..+ |...=+..++.+...|++.++..++++|...= ..-+..+|+.++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 3566677777665333322 22333566777889999999999999987653 3478889988666
Q ss_pred HHHHhC--------CHHHHHHHH-------HHHHhC------CCCCCHHHHHHHHHHHHhc--CCHhHHHHHHHHhhcC-
Q 008633 207 SFIRAG--------QVYKAIQML-------GRLEDF------GLKFDAESLNVVLWCLCQR--LHVGAASSLFNSMKGK- 262 (558)
Q Consensus 207 ~~~~~g--------~~~~A~~~~-------~~~~~~------g~~~~~~~~~~ll~~~~~~--~~~~~A~~~~~~m~~~- 262 (558)
.+.+.= ..+-+.+.| ++|... .+.|.......++....-. .+..--.++++.-...
T Consensus 176 mlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~y 255 (549)
T PF07079_consen 176 MLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFY 255 (549)
T ss_pred HHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhc
Confidence 555431 111111111 112111 1122222222232222211 1111111222222111
Q ss_pred CCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 008633 263 VLFNV-MTYNIVISGWSKLGQVVEMERVLKEIVAEGFS----PDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDT 337 (558)
Q Consensus 263 ~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 337 (558)
+.|+- -....|+..+.+ +.+++..+-+.+....+. -=..++..++....+.++..+|.+.+.-+.........
T Consensus 256 v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~sv 333 (549)
T PF07079_consen 256 VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISV 333 (549)
T ss_pred cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchh
Confidence 22222 122333333333 455555554444332211 12457888888889999999999988877665322111
Q ss_pred H-----HHHHHHHHHHhc----CCHHHHHHHHHHhhhCCCCCCHHHHHHHHH---HHHhcCC-HHHHHHHHHHHHHCCCC
Q 008633 338 N-----AYNAVISNYISV----GDFDECMKYYKGMSSYNCEPNMDTYTRLIS---GLLKSRK-VADALEVFEEMLDRGIV 404 (558)
Q Consensus 338 ~-----~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~---~~~~~g~-~~~A~~~~~~m~~~~~~ 404 (558)
. +-..+-+..+.. -+..+-+.+|+.....++.. ...-.-|+. -+-+.|. -++|+++++...+-. .
T Consensus 334 s~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~ 411 (549)
T PF07079_consen 334 SEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-N 411 (549)
T ss_pred hhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-c
Confidence 0 111222333311 13444556666665543211 111122222 2334454 788999999887742 1
Q ss_pred CCHHHHHH----HHHHHHh---cCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHH--HHcCCChhHHHHHHHHHHHC
Q 008633 405 PSTGTITS----FLEPLCS---YGPPHAAMMMYKKARKVGCKLS----LTAYKLLLRR--LSGFGKCGMLLDLWHEMQES 471 (558)
Q Consensus 405 p~~~~~~~----ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~ 471 (558)
-|...-|. +=.+|.. ......-..+-+-+.+.|+.|- ...-|.|.++ +...|++.++.-.-.-+.+
T Consensus 412 yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~- 490 (549)
T PF07079_consen 412 YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK- 490 (549)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-
Confidence 22222222 2222322 2333444445555566787764 3344555443 5567888888765555554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHH
Q 008633 472 GYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSK 517 (558)
Q Consensus 472 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 517 (558)
+.|++.+|..+.-++....++++|..++.. ++|+..++..
T Consensus 491 -iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ds 530 (549)
T PF07079_consen 491 -IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDS 530 (549)
T ss_pred -hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHH
Confidence 478999999999999999999999999984 4677666654
No 294
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=87.46 E-value=37 Score=34.91 Aligned_cols=350 Identities=9% Similarity=0.068 Sum_probs=199.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhC-CCC-CCHHHHHHHHHH
Q 008633 166 YNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFI-RAGQVYKAIQMLGRLEDF-GLK-FDAESLNVVLWC 242 (558)
Q Consensus 166 ~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~-~~g~~~~A~~~~~~~~~~-g~~-~~~~~~~~ll~~ 242 (558)
|-.....=.+.|..+.+..+|++.... ++.+...|...+.-++ ..|+.+.....|+.++.. |.. .+...|...|..
T Consensus 82 W~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~ 160 (577)
T KOG1258|consen 82 WKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEF 160 (577)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHH
Confidence 444444446789999999999998764 6666777766655444 457888888899888753 322 244567778888
Q ss_pred HHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHh---c------CCHHHHHHHHHHHHHc----CCCCCHHHHHHHH
Q 008633 243 LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSK---L------GQVVEMERVLKEIVAE----GFSPDSLTFSFLI 309 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~---~------g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll 309 (558)
-..++++.....+++++.+- ....|+..-.-|.+ . ...+++.++-....+. -..+.......-+
T Consensus 161 en~qks~k~v~~iyeRilei---P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v 237 (577)
T KOG1258|consen 161 ENGQKSWKRVANIYERILEI---PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGV 237 (577)
T ss_pred HhccccHHHHHHHHHHHHhh---hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHH
Confidence 88889999999999999874 33344444333332 2 2334444333222210 0001111111111
Q ss_pred HH-------------------------HHhcCCHHHHHHHHHHHHHCC---C----CCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 310 EG-------------------------LGRAGRIDDAIEVFDTMKEKG---C----GPDTNAYNAVISNYISVGDFDECM 357 (558)
Q Consensus 310 ~~-------------------------~~~~g~~~~a~~~~~~m~~~g---~----~p~~~~~~~li~~~~~~g~~~~A~ 357 (558)
.. +-......+....++.-++.- + .++..+|..-+..-.+.|+.+.+.
T Consensus 238 ~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~ 317 (577)
T KOG1258|consen 238 KDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVF 317 (577)
T ss_pred hhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHH
Confidence 11 111111111222222222211 1 123456777777778888888888
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008633 358 KYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIV--PSTGTITSFLEPLCSYGPPHAAMMMYKKARK 435 (558)
Q Consensus 358 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (558)
-+|+...-- |..=...|-..+.-....|+.+-|..++....+--++ |....+.+.+ +-..|+...|..+++.+..
T Consensus 318 ~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~ 394 (577)
T KOG1258|consen 318 ILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIES 394 (577)
T ss_pred HHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 888877631 1111233444444444458888888777665554322 2233333332 2346799999999998877
Q ss_pred cCCCCCH-HHHHHHHHHHHcCCChhHHH---HHHHHHHHCCCCCCHHHHHHHHHHH-----HhcCCHhHHHHHHHHHHhC
Q 008633 436 VGCKLSL-TAYKLLLRRLSGFGKCGMLL---DLWHEMQESGYPSDGEIYEYVIAGL-----CNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 436 ~~~~~~~-~~~~~li~~~~~~g~~~~A~---~~~~~m~~~~~~p~~~~~~~li~~~-----~~~g~~~~A~~~~~~m~~~ 506 (558)
.- |+. ..-..-+....+.|+.+.+. +++....+. .-+..+...+.--+ .-.++.+.|..++.++.+.
T Consensus 395 e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~ 470 (577)
T KOG1258|consen 395 EY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI 470 (577)
T ss_pred hC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 53 442 22223344566778887777 444444332 22333333333333 2357889999999998875
Q ss_pred CCCCCHHHHHHHHHHHHhcCC
Q 008633 507 GFCPSRLVYSKLSNKLLASNK 527 (558)
Q Consensus 507 g~~p~~~~~~~l~~~~~~~g~ 527 (558)
++++...|..+++.....+.
T Consensus 471 -~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 471 -LPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred -CCccHHHHHHHHHHHHhCCc
Confidence 45667888888888777663
No 295
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.43 E-value=78 Score=38.54 Aligned_cols=311 Identities=12% Similarity=0.000 Sum_probs=160.2
Q ss_pred HHHHhcCChHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008633 171 KALGRRKFFDFMCNVLSDM----AKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQR 246 (558)
Q Consensus 171 ~~~~~~~~~~~a~~l~~~m----~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 246 (558)
.+=-+.+.+.+|+..++.- .+.. ....-|..+...|+..++++...-+...-.. .|+ ...-|-.....
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEAS 1462 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHhh
Confidence 3445677888888888873 2211 1122334444488888888888777764221 122 22344556778
Q ss_pred CCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHH
Q 008633 247 LHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFS-FLIEGLGRAGRIDDAIEVF 325 (558)
Q Consensus 247 ~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~a~~~~ 325 (558)
|++..|...|+.+.+..++...+++-++......|.++.+.-..+-.... ..+....++ .=+.+--+.++++.....+
T Consensus 1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 99999999999998888877888888888888888888887766555443 222333333 3344446677777766665
Q ss_pred HHHHHCCCCCCHHHHHHH--HHHHHhcC--CHHHHHHHHHHhhhC--------CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 008633 326 DTMKEKGCGPDTNAYNAV--ISNYISVG--DFDECMKYYKGMSSY--------NCEP-NMDTYTRLISGLLKSRKVADAL 392 (558)
Q Consensus 326 ~~m~~~g~~p~~~~~~~l--i~~~~~~g--~~~~A~~~~~~m~~~--------~~~p-~~~~~~~li~~~~~~g~~~~A~ 392 (558)
. .. +..+|... .....+.. +.-.-.+..+.+.+. ++.- -...|..++....-..--...
T Consensus 1542 ~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~- 1613 (2382)
T KOG0890|consen 1542 S---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSI- 1613 (2382)
T ss_pred h---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHH-
Confidence 5 12 22222222 22222211 111111222222211 1110 012333333333222111111
Q ss_pred HHHHHHHHCCCCCCHH------HHHHHHHHHHhcCChhHHHHHHHH-HHHc----CC-CCCHHHHHHHHHHHHcCCChhH
Q 008633 393 EVFEEMLDRGIVPSTG------TITSFLEPLCSYGPPHAAMMMYKK-ARKV----GC-KLSLTAYKLLLRRLSGFGKCGM 460 (558)
Q Consensus 393 ~~~~~m~~~~~~p~~~------~~~~ll~~~~~~g~~~~a~~~~~~-~~~~----~~-~~~~~~~~~li~~~~~~g~~~~ 460 (558)
+... ++.++.. -|..-+.--....+..+-+-.+++ +... +. .--..+|-...+...++|+++.
T Consensus 1614 ---~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1614 ---EELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred ---HHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 1111 1122211 111111111111111111111111 1111 11 1124667777777777899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 461 LLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 461 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
|...+-...+.+ .| ..+--...-+.+.|+...|+.++++-++.
T Consensus 1689 A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1689 AQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 887776666654 33 35556667778889999999999988865
No 296
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.16 E-value=3.1 Score=38.75 Aligned_cols=103 Identities=13% Similarity=0.096 Sum_probs=68.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 008633 157 PNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEG---VNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDA 233 (558)
Q Consensus 157 ~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g---~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 233 (558)
.|.+.++.+-..++.......+++.+...+-+++..- ..++. +-.++++.|.+ -+.++++.++..=+..|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence 3555666666677777777777888877777765431 12221 22223333333 3566888887777788888888
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhc
Q 008633 234 ESLNVVLWCLCQRLHVGAASSLFNSMKG 261 (558)
Q Consensus 234 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 261 (558)
.+++.+|+.+.+.+++.+|.++...|..
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 8888888888888888888777766644
No 297
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.03 E-value=31 Score=33.58 Aligned_cols=65 Identities=11% Similarity=0.123 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 336 DTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEP---NMDTYTRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
...+|..+...+.+.|.++.|...+..+.+.+... .....-.-...+-..|+..+|+..+++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777888888888888888888877643111 223333445556667888888888877766
No 298
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.01 E-value=18 Score=30.81 Aligned_cols=19 Identities=32% Similarity=0.573 Sum_probs=9.9
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 008633 384 KSRKVADALEVFEEMLDRG 402 (558)
Q Consensus 384 ~~g~~~~A~~~~~~m~~~~ 402 (558)
+.+..++|+.-|.++.+.|
T Consensus 70 ~~~k~d~Alaaf~~lektg 88 (221)
T COG4649 70 QENKTDDALAAFTDLEKTG 88 (221)
T ss_pred HcCCchHHHHHHHHHHhcC
Confidence 3445555555555555544
No 299
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.01 E-value=0.65 Score=27.49 Aligned_cols=25 Identities=20% Similarity=0.097 Sum_probs=14.5
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHH
Q 008633 263 VLFNVMTYNIVISGWSKLGQVVEME 287 (558)
Q Consensus 263 ~~~~~~~~~~li~~~~~~g~~~~A~ 287 (558)
.|-|..+|+.+...|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3445566666666666666665553
No 300
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.55 E-value=1.2 Score=26.29 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHH
Q 008633 512 RLVYSKLSNKLLASNKLESAY 532 (558)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~ 532 (558)
...|..|...|...|++++|+
T Consensus 13 ~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhhc
Confidence 566666666666666666654
No 301
>PHA02875 ankyrin repeat protein; Provisional
Probab=86.38 E-value=20 Score=36.08 Aligned_cols=209 Identities=14% Similarity=0.086 Sum_probs=96.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCH
Q 008633 174 GRRKFFDFMCNVLSDMAKEGVNPDLET--LSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAE--SLNVVLWCLCQRLHV 249 (558)
Q Consensus 174 ~~~~~~~~a~~l~~~m~~~g~~~~~~t--~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~~~ll~~~~~~~~~ 249 (558)
++.|+.+.+ +.+.+.|..|+... ..+.+..++..|+.+- .+.+.+.|..++.. ...+.+...+..|+.
T Consensus 10 ~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 445555443 33334565554332 2334455556676653 34444455544432 122345566677888
Q ss_pred hHHHHHHHHhhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHH
Q 008633 250 GAASSLFNSMKGKV-LFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLT--FSFLIEGLGRAGRIDDAIEVFD 326 (558)
Q Consensus 250 ~~A~~~~~~m~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~ 326 (558)
+.+..+++.-.... ..+..- .+.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+-+..+
T Consensus 82 ~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L-- 154 (413)
T PHA02875 82 KAVEELLDLGKFADDVFYKDG-MTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL-- 154 (413)
T ss_pred HHHHHHHHcCCcccccccCCC-CCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH--
Confidence 77776665432110 001111 1233334455655 34455555666554322 12344555566776544443
Q ss_pred HHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 327 TMKEKGCGPDTN--AYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDT---YTRLISGLLKSRKVADALEVFEEMLDR 401 (558)
Q Consensus 327 ~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (558)
.+.|..++.. .-.+.+...+..|+.+-+ +.+.+.|..++... ..+++...+..|+.+ +.+-+.+.
T Consensus 155 --l~~g~~~~~~d~~g~TpL~~A~~~g~~eiv----~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~ 224 (413)
T PHA02875 155 --IDHKACLDIEDCCGCTPLIIAMAKGDIAIC----KMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKR 224 (413)
T ss_pred --HhcCCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHC
Confidence 3444433221 111233344555665443 34445554444322 123444344556654 44445556
Q ss_pred CCCCCH
Q 008633 402 GIVPST 407 (558)
Q Consensus 402 ~~~p~~ 407 (558)
|..++.
T Consensus 225 gad~n~ 230 (413)
T PHA02875 225 GADCNI 230 (413)
T ss_pred CcCcch
Confidence 665553
No 302
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.17 E-value=51 Score=35.16 Aligned_cols=24 Identities=8% Similarity=0.336 Sum_probs=18.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhh
Q 008633 341 NAVISNYISVGDFDECMKYYKGMS 364 (558)
Q Consensus 341 ~~li~~~~~~g~~~~A~~~~~~m~ 364 (558)
..|+..|...+++.+|..++-...
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhcc
Confidence 347788888888888888777665
No 303
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=85.86 E-value=66 Score=36.17 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=27.1
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008633 449 LRRLSGFGKCGMLLDLWHEMQESGYPSDGE--IYEYVIAGLCNIGQLENAVLVMEESL 504 (558)
Q Consensus 449 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (558)
+.+|..+|++.+|+.+-.++... -|.. +-..|+.-+...++.-+|-+++.+..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 44555556666666655555321 1111 11445555566666666666665554
No 304
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=85.14 E-value=24 Score=30.54 Aligned_cols=181 Identities=14% Similarity=0.121 Sum_probs=94.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----HHCCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Q 008633 158 NVAKDVKSYNVIVKALGRRKFFDFMCNVLSDM----AKEGVNPD----LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGL 229 (558)
Q Consensus 158 ~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m----~~~g~~~~----~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 229 (558)
|...+...+|.++..+.+..-...-++.+-.| ...+...+ ......-+..|-+.|++.+--.+|-.+.. |.
T Consensus 3 Gm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~-gc 81 (233)
T PF14669_consen 3 GMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKM-GC 81 (233)
T ss_pred cccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHh-hc
Confidence 45567788888888876654333333333333 33344333 22333334566666666665555544332 11
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008633 230 KFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLI 309 (558)
Q Consensus 230 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 309 (558)
+ +..-+..+- + --|..+.++.+++ ..+.|......-++.-..+++.+.+- ..+-.+++
T Consensus 82 e-~~~dlq~~~-~-------~va~~Ltkd~Kdk---~~vPFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m 139 (233)
T PF14669_consen 82 E-KFADLQRFC-A-------CVAEALTKDSKDK---PGVPFCEFAETVCKDPQNDEVDKTLL----------GRIGISLM 139 (233)
T ss_pred C-CHHHHHHHH-H-------HHHHHHHhccccc---CCCCHHHHHHHHhcCCccchhhhhhh----------hHHHHHHH
Confidence 1 111111000 0 0122233333332 34456666666666655555444332 12234567
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC--------------CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 310 EGLGRAGRIDDAIEVFDTMKEKGCG--------------PDTNAYNAVISNYISVGDFDECMKYYK 361 (558)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~m~~~g~~--------------p~~~~~~~li~~~~~~g~~~~A~~~~~ 361 (558)
..|.+.-++.++.++++.|-+..+. +--...|.....+.+.|.+|.|..+++
T Consensus 140 ~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 140 YSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 7788888899999999888765322 122344555666666666666666665
No 305
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.76 E-value=12 Score=28.58 Aligned_cols=47 Identities=15% Similarity=0.100 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 460 MLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 460 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
+..+-++.+...++.|++.+..+.+.+|.+.+++..|+++++-...+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444445555566666666666666666666666666666655443
No 306
>PRK09687 putative lyase; Provisional
Probab=84.60 E-value=36 Score=32.07 Aligned_cols=74 Identities=15% Similarity=0.119 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008633 441 SLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSN 520 (558)
Q Consensus 441 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 520 (558)
+..+-...+.++.+.|.. .|+..+-...+.+ + .....+.++...|.. +|+..+.++.+. .||..+-...+.
T Consensus 205 ~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~ 275 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAID 275 (280)
T ss_pred ChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHH
Confidence 444444555555555553 3333333333322 1 123455666666664 566666666653 345555555555
Q ss_pred HHH
Q 008633 521 KLL 523 (558)
Q Consensus 521 ~~~ 523 (558)
+|.
T Consensus 276 a~~ 278 (280)
T PRK09687 276 KLK 278 (280)
T ss_pred HHh
Confidence 543
No 307
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.36 E-value=22 Score=36.57 Aligned_cols=131 Identities=20% Similarity=0.176 Sum_probs=70.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 008633 305 FSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLK 384 (558)
Q Consensus 305 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 384 (558)
.+.+.+.+-+.|..++|+++ .+|.. .-.....+.|+++.|.++..+.. +..-|..|.++..+
T Consensus 617 rt~va~Fle~~g~~e~AL~~---------s~D~d---~rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALEL---------STDPD---QRFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALS 678 (794)
T ss_pred hhhHHhHhhhccchHhhhhc---------CCChh---hhhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhh
Confidence 34455555566666555543 12221 12234456677777776665543 45567777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 008633 385 SRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDL 464 (558)
Q Consensus 385 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 464 (558)
.+++..|.+.|......+ .|+-.+...|+.+....+-....+.| +. |...-+|...|+++++.++
T Consensus 679 ~~~l~lA~EC~~~a~d~~---------~LlLl~t~~g~~~~l~~la~~~~~~g-~~-----N~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 679 AGELPLASECFLRARDLG---------SLLLLYTSSGNAEGLAVLASLAKKQG-KN-----NLAFLAYFLSGDYEECLEL 743 (794)
T ss_pred cccchhHHHHHHhhcchh---------hhhhhhhhcCChhHHHHHHHHHHhhc-cc-----chHHHHHHHcCCHHHHHHH
Confidence 777777777776654422 34444555566554444444444444 11 2222345556666666666
Q ss_pred HHHH
Q 008633 465 WHEM 468 (558)
Q Consensus 465 ~~~m 468 (558)
+.+-
T Consensus 744 Li~t 747 (794)
T KOG0276|consen 744 LIST 747 (794)
T ss_pred HHhc
Confidence 5443
No 308
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.27 E-value=2.7 Score=24.47 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=10.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHH
Q 008633 480 YEYVIAGLCNIGQLENAVLVMEESL 504 (558)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~~~m~ 504 (558)
|..+...+...|++++|+..+++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 3444444444444444444444444
No 309
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.70 E-value=38 Score=31.59 Aligned_cols=58 Identities=14% Similarity=0.219 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 008633 305 FSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGM 363 (558)
Q Consensus 305 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 363 (558)
++.....|..+|.+.+|.++.+...... +.+...+-.|+..+...|+--.|.+-++++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3344556666677777777666666553 225556666677777777655555555555
No 310
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.66 E-value=3 Score=24.18 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 515 YSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
+..+...+.+.|++++|++.+++..
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 311
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=83.64 E-value=72 Score=34.72 Aligned_cols=205 Identities=13% Similarity=0.056 Sum_probs=98.5
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHH-------HHHHHHH-HHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 008633 348 ISVGDFDECMKYYKGMSSYNCEPNMD-------TYTRLIS-GLLKSRKVADALEVFEEMLDR----GIVPSTGTITSFLE 415 (558)
Q Consensus 348 ~~~g~~~~A~~~~~~m~~~~~~p~~~-------~~~~li~-~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~ll~ 415 (558)
....++++|..+..++...-..|+.. .++.+-. .....|++++|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45667788877777765432122211 2232221 123457778887777766543 11223344455555
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHH---HH--HHHHHcCCCh--hHHHHHHHHHHHC--CCCC----CHHHHHH
Q 008633 416 PLCSYGPPHAAMMMYKKARKVGCKLSLTAYK---LL--LRRLSGFGKC--GMLLDLWHEMQES--GYPS----DGEIYEY 482 (558)
Q Consensus 416 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~l--i~~~~~~g~~--~~A~~~~~~m~~~--~~~p----~~~~~~~ 482 (558)
+..-.|++++|..+.+...+..-.-+...+. .+ ...+...|+. .+.+..+...... +-.| -.-++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 5556788888887777665542222322222 22 1224455632 2223333333211 0011 1223444
Q ss_pred HHHHHHhc-CCHhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchhhhhhc
Q 008633 483 VIAGLCNI-GQLENAVLVMEESLRKGFCPSRL--VYSKLSNKLLASNKLESAYNLFRKIKIARQNDYARRLWR 552 (558)
Q Consensus 483 li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 552 (558)
+..++.+. +...+|..-++-.......|-.. .+..|+..+...|+.++|...++++......+.+..+|.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~ 658 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL 658 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
Confidence 44444441 22222222222222221111112 223567777788888888888888877666665555553
No 312
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=83.49 E-value=4.4 Score=23.56 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 513 LVYSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
.+|..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 57889999999999999999999998854
No 313
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.43 E-value=0.42 Score=39.85 Aligned_cols=83 Identities=13% Similarity=0.104 Sum_probs=39.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008633 413 FLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQ 492 (558)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 492 (558)
++..+.+.+.+.....+++.+...+...+....+.++..|++.+..++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34444445555555555555555444444555555555555555555555554411 11122334444455555
Q ss_pred HhHHHHHHHH
Q 008633 493 LENAVLVMEE 502 (558)
Q Consensus 493 ~~~A~~~~~~ 502 (558)
+++|..++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 314
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.26 E-value=4.4 Score=23.38 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 478 EIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 478 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
..|..+...+...|++++|++.+++.++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788899999999999999999999865
No 315
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.13 E-value=13 Score=32.53 Aligned_cols=73 Identities=11% Similarity=0.050 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 459 GMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK---GFCPSRLVYSKLSNKLLASNKLESAY 532 (558)
Q Consensus 459 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~l~~~~~~~g~~~~A~ 532 (558)
++|.+.|-.+...+.--++.....+...|. ..+.++|+.++-++++. +-.+|+..+..|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 566777777766654445555554444444 56777788877777764 33567788888888888888887775
No 316
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.12 E-value=3.4 Score=25.28 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 513 LVYSKLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
.+++.|...|...|++++|.+++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667777777777888888777777654
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.02 E-value=3.3 Score=25.37 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008633 478 EIYEYVIAGLCNIGQLENAVLVMEESLR 505 (558)
Q Consensus 478 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 505 (558)
.+++.+...|...|++++|..++++.++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4778888888999999999998888764
No 318
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.84 E-value=12 Score=28.31 Aligned_cols=45 Identities=16% Similarity=0.333 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 285 EMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMK 329 (558)
Q Consensus 285 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 329 (558)
++.+-+..+....+.|+.....+.+++|.+.+++..|..+++..+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444444444555555555555555555555555554443
No 319
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.59 E-value=33 Score=34.23 Aligned_cols=121 Identities=13% Similarity=0.104 Sum_probs=71.6
Q ss_pred HhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 244 CQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIE 323 (558)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 323 (558)
...|++-.|-+-+.......+.+..........+...|+++.+...+....+. +.....+..++++...+.|++++|..
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34566555544333333333333333333344455668888887777665442 23455677778888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 008633 324 VFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSY 366 (558)
Q Consensus 324 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 366 (558)
.-+.|....++ +........-..-..|-++++.-.|+++...
T Consensus 379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 88877777665 4444433333344556677777777777543
No 320
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.57 E-value=38 Score=30.76 Aligned_cols=205 Identities=11% Similarity=0.119 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 008633 304 TFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLL 383 (558)
Q Consensus 304 t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 383 (558)
.|.....+|..+.++++|...+.+..+. .+-+...|. ....++.|.-+.++|.+. .--+..|+--...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3455556677777777777766665432 111221121 122234444444444431 111233445555666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---C--CCCCHHHHHHHHHHHHcCCCh
Q 008633 384 KSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKV---G--CKLSLTAYKLLLRRLSGFGKC 458 (558)
Q Consensus 384 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~--~~~~~~~~~~li~~~~~~g~~ 458 (558)
.+|..+.|-..+++.-+. ....+++.|+++|++.... + ...-...|...-+.+.+..++
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 666666655555443221 1122233333333332211 0 000112233334445555666
Q ss_pred hHHHHHHHHHH----HCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC-C--CCCHHHHHHHHHHHHhcCCHHH
Q 008633 459 GMLLDLWHEMQ----ESGYPSD-GEIYEYVIAGLCNIGQLENAVLVMEESLRKG-F--CPSRLVYSKLSNKLLASNKLES 530 (558)
Q Consensus 459 ~~A~~~~~~m~----~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~--~p~~~~~~~l~~~~~~~g~~~~ 530 (558)
++|-..+.+-. +..--++ ...|-..|-.+....++..|.+.++...+-+ + .-+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 65544333221 1111112 1234444555555667777777777644331 1 12245566666555 3566666
Q ss_pred HHHHH
Q 008633 531 AYNLF 535 (558)
Q Consensus 531 A~~~~ 535 (558)
+.+++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 65554
No 321
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.44 E-value=27 Score=28.99 Aligned_cols=51 Identities=12% Similarity=-0.027 Sum_probs=24.5
Q ss_pred cCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008633 246 RLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE 296 (558)
Q Consensus 246 ~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 296 (558)
.++.+++..+++.|.---|-....-..-...+...|++++|.++|++..+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 455555666655554322212222222223344556666666666666554
No 322
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.31 E-value=18 Score=31.61 Aligned_cols=94 Identities=19% Similarity=0.117 Sum_probs=64.0
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008633 416 PLCSYGPPHAAMMMYKKARKVGCKLS----LTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIG 491 (558)
Q Consensus 416 ~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 491 (558)
-+...|++++|..-|..+++.-.... ...|..-..++.+.+.++.|+.-....++.+ +........-..+|-+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhh
Confidence 46778999999998888887532222 2345555567788888888888887777764 212223333345677888
Q ss_pred CHhHHHHHHHHHHhCCCCCCH
Q 008633 492 QLENAVLVMEESLRKGFCPSR 512 (558)
Q Consensus 492 ~~~~A~~~~~~m~~~g~~p~~ 512 (558)
++++|+.-|+++.+. .|..
T Consensus 183 k~eealeDyKki~E~--dPs~ 201 (271)
T KOG4234|consen 183 KYEEALEDYKKILES--DPSR 201 (271)
T ss_pred hHHHHHHHHHHHHHh--Ccch
Confidence 899999999888876 3553
No 323
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.95 E-value=34 Score=29.85 Aligned_cols=94 Identities=11% Similarity=0.024 Sum_probs=57.7
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCHHHH-----HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008633 449 LRRLSGFGKCGMLLDLWHEMQESGYPSDGEIY-----EYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLL 523 (558)
Q Consensus 449 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 523 (558)
...+...|++++|+.-++..... +-| ..+ -.|.......|.+|+|+..++.....+. .......-.+.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~--t~D-e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ--TKD-ENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc--chh-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 44566777777777777766543 112 122 2234556677888888887776554432 2333445567777
Q ss_pred hcCCHHHHHHHHHHHHHhcCCchh
Q 008633 524 ASNKLESAYNLFRKIKIARQNDYA 547 (558)
Q Consensus 524 ~~g~~~~A~~~~~~m~~~~~~~~~ 547 (558)
..|+-++|+.-|++..+....+..
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 171 AKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred HcCchHHHHHHHHHHHHccCChHH
Confidence 888888888888877776544433
No 324
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.74 E-value=11 Score=33.45 Aligned_cols=46 Identities=9% Similarity=-0.093 Sum_probs=18.3
Q ss_pred HHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 008633 243 LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMER 288 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 288 (558)
+.+.+.+.+|+...++-....|.|...-..++..+|-.|++++|..
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~ 56 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALA 56 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHH
Confidence 3333344444443333332233333444444444444444444443
No 325
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.66 E-value=78 Score=33.79 Aligned_cols=45 Identities=11% Similarity=0.120 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008633 201 LSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQR 246 (558)
Q Consensus 201 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 246 (558)
.-.+|=.|.++|+.++|.++..+..+. .......+...+..|+..
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 344566677888888888877554432 333445556666666554
No 326
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.82 E-value=13 Score=32.96 Aligned_cols=77 Identities=13% Similarity=0.087 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHH
Q 008633 409 TITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQES--GYPSDGEIYEYVIAG 486 (558)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~ 486 (558)
|.+.-++.+.+.+...+|+...+.-++.. +-+...-..+++.||-.|++++|..-++-.-+. ...+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34555667778889999999888777754 445666777889999999999998777766543 224445677777764
No 327
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=78.78 E-value=36 Score=28.19 Aligned_cols=81 Identities=12% Similarity=0.211 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008633 166 YNVIVKALGRRKFFDFMCNVLSDMAKEGV-----NPDLETLSIVMDSFIRAGQ-VYKAIQMLGRLEDFGLKFDAESLNVV 239 (558)
Q Consensus 166 ~~~li~~~~~~~~~~~a~~l~~~m~~~g~-----~~~~~t~~~li~~~~~~g~-~~~A~~~~~~~~~~g~~~~~~~~~~l 239 (558)
.|.++.-....+++...+.+++.+..... ..+-..|++++++...... .-.+..+|..+++.+.+.+..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 67777777777777777777777743210 2344567777777765555 44566677777776677777777777
Q ss_pred HHHHHhc
Q 008633 240 LWCLCQR 246 (558)
Q Consensus 240 l~~~~~~ 246 (558)
+.++.+-
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7766544
No 328
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.46 E-value=37 Score=35.03 Aligned_cols=99 Identities=13% Similarity=0.163 Sum_probs=48.5
Q ss_pred HhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 244 CQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIE 323 (558)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 323 (558)
.+.|+++.|.++..+.. +..-|..|.++....|++..|.+.|..... |..|+-.+...|+-+....
T Consensus 648 l~lgrl~iA~~la~e~~-----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN-----SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhcCcHHHHHHHHHhhc-----chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 44555555555544433 344456666666666666666655554432 2334444444555444444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 324 VFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKG 362 (558)
Q Consensus 324 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 362 (558)
+-....+.|.. |....+|...|+++++.+++.+
T Consensus 714 la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 714 LASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 44444444332 2223344455566555555543
No 329
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=78.31 E-value=1.2 Score=37.14 Aligned_cols=129 Identities=16% Similarity=0.180 Sum_probs=79.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 008633 377 RLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFG 456 (558)
Q Consensus 377 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 456 (558)
.+|..+.+.+..+....+++.+...+...+....+.++..|++.++.+....+++ .. +..-...+++.|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~---~~----~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK---TS----NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT---SS----SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc---cc----cccCHHHHHHHHHhcc
Confidence 3567777788888888899998877666677888899999999887778777775 11 1122334556666667
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 457 KCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNK 527 (558)
Q Consensus 457 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 527 (558)
.+++|.-++.++.... ..+..+...++++.|.+++.+ .++..+|..++..|...+.
T Consensus 85 l~~~a~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp SHHHHHHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred hHHHHHHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 7766666665543211 111112344555555533332 2456788888887766554
No 330
>PHA02875 ankyrin repeat protein; Provisional
Probab=78.05 E-value=66 Score=32.28 Aligned_cols=14 Identities=14% Similarity=0.036 Sum_probs=6.8
Q ss_pred HhcCCHhHHHHHHH
Q 008633 244 CQRLHVGAASSLFN 257 (558)
Q Consensus 244 ~~~~~~~~A~~~~~ 257 (558)
++.|+.+.+..+++
T Consensus 10 ~~~g~~~iv~~Ll~ 23 (413)
T PHA02875 10 ILFGELDIARRLLD 23 (413)
T ss_pred HHhCCHHHHHHHHH
Confidence 34455555544443
No 331
>PRK09687 putative lyase; Provisional
Probab=77.97 E-value=63 Score=30.48 Aligned_cols=121 Identities=18% Similarity=0.163 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008633 336 DTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSR-KVADALEVFEEMLDRGIVPSTGTITSFL 414 (558)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll 414 (558)
+..+-...+.++++.++ ++|...+-.+.+ .+|...-...+.++...+ ....+...+..+.. .++...-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 33344444455555444 234444444433 233333333444444332 12334444444442 22333344444
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 008633 415 EPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQE 470 (558)
Q Consensus 415 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 470 (558)
.++.+.|+. .++..+-...+.+. .....+.++...|.. +|...+..+.+
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 445555442 33333333333221 122344445555543 34444444443
No 332
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.42 E-value=49 Score=30.74 Aligned_cols=136 Identities=15% Similarity=0.129 Sum_probs=78.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-------HHHHHHHHhcCCHHHHHHHHHH----HHHCCCCCCHHHHH
Q 008633 273 VISGWSKLGQVVEMERVLKEIVAEGFSPDSLTF-------SFLIEGLGRAGRIDDAIEVFDT----MKEKGCGPDTNAYN 341 (558)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-------~~ll~~~~~~g~~~~a~~~~~~----m~~~g~~p~~~~~~ 341 (558)
+.+-..+.+++++|+..+.+....|+..|..+. ..+...|...|+.....+.... |....-+-.+....
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 445566677888888888888888877665543 4556667777776554433322 22222222344555
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHhhhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCCCCHH
Q 008633 342 AVISNYISV-GDFDECMKYYKGMSSYNCEPN-----MDTYTRLISGLLKSRKVADALEVFEEM----LDRGIVPSTG 408 (558)
Q Consensus 342 ~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~ 408 (558)
+|+..+... ..++.-+++.....+....-. ...-.-+|..+.+.|.+.+|+.+...+ .+..-+|+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li 165 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI 165 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence 666655433 345666666655544221111 112245788899999999998876544 4444445443
No 333
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.03 E-value=3.7 Score=22.38 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 008633 515 YSKLSNKLLASNKLESAYNLFR 536 (558)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~ 536 (558)
...+..++...|++++|.++++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445566666666666666554
No 334
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=76.52 E-value=2e+02 Score=35.45 Aligned_cols=317 Identities=10% Similarity=0.037 Sum_probs=170.7
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhc
Q 008633 203 IVMDSFIRAGQVYKAIQMLGRLEDFGL--KFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKL 280 (558)
Q Consensus 203 ~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~ 280 (558)
.+..+-.+.+.+.+|...++.-..... ......|-.+...|..-++.|....+...-.. + .....-|......
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~-~sl~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----D-PSLYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----C-ccHHHHHHHHHhh
Confidence 444556678889999888887311111 11233445555589999999888777764211 1 1233445566778
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHH
Q 008633 281 GQVVEMERVLKEIVAEGFSPD-SLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAY-NAVISNYISVGDFDECMK 358 (558)
Q Consensus 281 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~ 358 (558)
|++..|...|+.+.+.+ |+ ..+++-+++.....|.+..+....+...... .+....+ +.=+.+--+.++++....
T Consensus 1463 g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred ccHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 99999999999998764 44 6788888888888888888777655554432 2222223 333444567777777766
Q ss_pred HHHHhhhCCCCCCHHHHHHH--HHHHHhcC--CHHHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHHhcCChhH
Q 008633 359 YYKGMSSYNCEPNMDTYTRL--ISGLLKSR--KVADALEVFEEMLDRGIVP---------STGTITSFLEPLCSYGPPHA 425 (558)
Q Consensus 359 ~~~~m~~~~~~p~~~~~~~l--i~~~~~~g--~~~~A~~~~~~m~~~~~~p---------~~~~~~~ll~~~~~~g~~~~ 425 (558)
... + .+..+|... ...+.+.. +.-.-.+.++.+.+.-+.| -...|..+++...-. +
T Consensus 1540 ~l~---~----~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~----e 1608 (2382)
T KOG0890|consen 1540 YLS---D----RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL----E 1608 (2382)
T ss_pred hhh---c----ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----H
Confidence 655 1 123334333 33333322 2222222333333221111 112233332211110 0
Q ss_pred HHHHHHHHHHcCCCCC------HHHHHHHHHHHHcCCChhHHH-HHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCH
Q 008633 426 AMMMYKKARKVGCKLS------LTAYKLLLRRLSGFGKCGMLL-DLWHEMQESGYPS-----DGEIYEYVIAGLCNIGQL 493 (558)
Q Consensus 426 a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~p-----~~~~~~~li~~~~~~g~~ 493 (558)
-....+.. .+..++ ..-|..-+..-....+..+-+ .+-+.+......| -..+|-...+...+.|++
T Consensus 1609 l~~~~~~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1609 LENSIEEL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred HHHHHHHh--hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence 00000111 111111 111222211111111111111 1111222211121 245888889989999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 008633 494 ENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQ 543 (558)
Q Consensus 494 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 543 (558)
+.|...+-.+.+.+ . +..+...+..+...|+...|+.++++..+...
T Consensus 1687 q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 99999888887765 2 35666677888999999999999999875444
No 335
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=75.97 E-value=8.2 Score=22.27 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHH
Q 008633 480 YEYVIAGLCNIGQLENAVLVMEESL 504 (558)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~~~m~ 504 (558)
|..+...+...|++++|...|++.+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444455555554444444
No 336
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=75.90 E-value=8.7 Score=22.15 Aligned_cols=29 Identities=21% Similarity=0.161 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 513 LVYSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
.+|..+...|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46788999999999999999999998754
No 337
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.63 E-value=67 Score=29.60 Aligned_cols=54 Identities=20% Similarity=0.220 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCCCCHHHHHHHHHH-----HHhcCCHHHHH
Q 008633 478 EIYEYVIAGLCNIGQLENAVLVMEESLRK-GFCPSRLVYSKLSNK-----LLASNKLESAY 532 (558)
Q Consensus 478 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~-----~~~~g~~~~A~ 532 (558)
.+|..=|..|..+.+-..-..++++.+.- .-.|.+.+... ++- ..+.|.+++|.
T Consensus 192 EiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 192 EIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAH 251 (440)
T ss_pred hhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHH
Confidence 35555566666666655555666655432 22344433332 222 24556666554
No 338
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=75.08 E-value=1.3e+02 Score=32.80 Aligned_cols=265 Identities=14% Similarity=0.040 Sum_probs=137.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH---cC-----------CCCCHHHHH----HHHHH--HHhcCCHHHHHHHHHHHHHCC
Q 008633 273 VISGWSKLGQVVEMERVLKEIVA---EG-----------FSPDSLTFS----FLIEG--LGRAGRIDDAIEVFDTMKEKG 332 (558)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~~---~g-----------~~p~~~t~~----~ll~~--~~~~g~~~~a~~~~~~m~~~g 332 (558)
.|.-.++.|+++.|..++++... .+ --|+...++ .++.+ .....++++|..+.+++...-
T Consensus 366 AI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l 445 (894)
T COG2909 366 AIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFL 445 (894)
T ss_pred HHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHh
Confidence 34555667788777777766511 11 112222211 22233 345688999999988876553
Q ss_pred CCCCH-------HHHHHHH-HHHHhcCCHHHHHHHHHHhhhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 333 CGPDT-------NAYNAVI-SNYISVGDFDECMKYYKGMSSY----NCEPNMDTYTRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 333 ~~p~~-------~~~~~li-~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
..|+. ..++.|- ......|++++|.++-+..... -..+....+..+..+..-.|++++|..+..+..+
T Consensus 446 ~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 446 KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 22222 1233322 2234568888988888776542 2334566777788888889999999988877655
Q ss_pred CCCCCCHHHHH---HHH--HHHHhcCChhHH--HHHHHHHHHcC---C---CCCHHHHHHHHHHHHcCC-ChhHHHHHHH
Q 008633 401 RGIVPSTGTIT---SFL--EPLCSYGPPHAA--MMMYKKARKVG---C---KLSLTAYKLLLRRLSGFG-KCGMLLDLWH 466 (558)
Q Consensus 401 ~~~~p~~~~~~---~ll--~~~~~~g~~~~a--~~~~~~~~~~~---~---~~~~~~~~~li~~~~~~g-~~~~A~~~~~ 466 (558)
..-.-+...+. .+. ..+...|+...+ +..+....... . .+-..++..++.++.+.. ...++..-+.
T Consensus 526 ~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~ 605 (894)
T COG2909 526 MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIE 605 (894)
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcch
Confidence 32222333222 221 224456633333 23333332221 1 122344455555555421 1111111122
Q ss_pred HHHHCCCCCCHHH--HHHHHHHHHhcCCHhHHHHHHHHHHhCCC----CCCHHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 008633 467 EMQESGYPSDGEI--YEYVIAGLCNIGQLENAVLVMEESLRKGF----CPSRLVYSKLSNK--LLASNKLESAYNLFRK 537 (558)
Q Consensus 467 ~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 537 (558)
--......|-... +..|+......|+.++|...++++..... .++...-...+.. -...|+.++|.....+
T Consensus 606 ~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 606 VGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 1112211221112 23566777788999999999998876422 2232222233332 2457888777776655
No 339
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=74.42 E-value=7.7 Score=33.26 Aligned_cols=111 Identities=13% Similarity=0.071 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHcCCChhHHHHHHHHHHH-----CCCCCCH-HHHHHHHHHHHhcC---
Q 008633 424 HAAMMMYKKARKVGCKLSLTA---YKLLLRRLSGFGKCGMLLDLWHEMQE-----SGYPSDG-EIYEYVIAGLCNIG--- 491 (558)
Q Consensus 424 ~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~-~~~~~li~~~~~~g--- 491 (558)
+.|.+.++.....+ +.|... |...+.-+.+.....++.+++++..+ ..+.|+. .++..+..+|...+
T Consensus 8 E~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 8 EHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 44555555433332 333333 33344445555555666666666542 2345554 46666666665543
Q ss_pred -C-------HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 008633 492 -Q-------LENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQ 543 (558)
Q Consensus 492 -~-------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 543 (558)
+ +++|...|+++... .|+..+|..- ....++|-++..++.+.+.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ks------Le~~~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKS------LEMAAKAPELHMEIHKQGL 138 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHH------HHHHHTHHHHHHHHHHSSS
T ss_pred CChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHH------HHHHHhhHHHHHHHHHHHh
Confidence 2 34444455555433 5666665432 2444556666666655544
No 340
>PRK11619 lytic murein transglycosylase; Provisional
Probab=74.37 E-value=1.3e+02 Score=32.34 Aligned_cols=136 Identities=10% Similarity=-0.039 Sum_probs=70.2
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 008633 174 GRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAAS 253 (558)
Q Consensus 174 ~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~ 253 (558)
.+.|++..+..+...+...-+ ..-..|..+...+. ....++...++++-.. .+.....-..-+..+.+.+++....
T Consensus 44 ~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~~--~P~~~~Lr~~~l~~La~~~~w~~~~ 119 (644)
T PRK11619 44 WDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAVQVTNFIRANPT--LPPARSLQSRFVNELARREDWRGLL 119 (644)
T ss_pred HHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHHHHHHHHHHCCC--CchHHHHHHHHHHHHHHccCHHHHH
Confidence 466777777776666643211 12223333332221 2234444444333211 1222333344455566677777666
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 008633 254 SLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRI 318 (558)
Q Consensus 254 ~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 318 (558)
..+ ...+.+...-.....+....|+.++|....+.+-..|. .....+..++..+.+.|.+
T Consensus 120 ~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 120 AFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred Hhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCC
Confidence 522 12244566666777777788887777776666655542 2344556666666655543
No 341
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.15 E-value=6.5 Score=22.42 Aligned_cols=27 Identities=11% Similarity=0.205 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 515 YSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
+..+..++.+.|++++|.+.++++.+.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345667777788888888888887753
No 342
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=73.48 E-value=16 Score=37.38 Aligned_cols=57 Identities=21% Similarity=0.227 Sum_probs=25.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 343 VISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 343 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
|.....+.|...+|..++.+..... ....-++-.+.+++....+++.|++.|++..+
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~ 704 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALK 704 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHh
Confidence 3333344444444444444443322 12223344444455555555555555555444
No 343
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=73.44 E-value=48 Score=30.75 Aligned_cols=87 Identities=11% Similarity=0.066 Sum_probs=39.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----
Q 008633 309 IEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLK---- 384 (558)
Q Consensus 309 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---- 384 (558)
|.+++..+++.++....-+.-+.--+.-..+...-|-.|.|.++...+.++-......--.-+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4555555555555444333222211111223333344456666666666655555432112223335555544443
Q ss_pred -cCCHHHHHHHH
Q 008633 385 -SRKVADALEVF 395 (558)
Q Consensus 385 -~g~~~~A~~~~ 395 (558)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666666654
No 344
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=73.21 E-value=5.6 Score=22.69 Aligned_cols=25 Identities=8% Similarity=0.298 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 482 YVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 482 ~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
.+..++.+.|++++|.+.|+++++.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4555666677777777777777654
No 345
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=72.60 E-value=1.2e+02 Score=30.99 Aligned_cols=164 Identities=9% Similarity=0.033 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008633 336 DTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLE 415 (558)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 415 (558)
|....-+++..+.....+.-.+-+..+|...| -+-..|..++++|..+ ..++-..+++++.+..+ -|.+.-..+..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 33444556666666666666666666666543 3455566666666666 44555566666655432 12222233333
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHcCCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh
Q 008633 416 PLCSYGPPHAAMMMYKKARKVGCKL-----SLTAYKLLLRRLSGFGKCGMLLDLWHEMQE-SGYPSDGEIYEYVIAGLCN 489 (558)
Q Consensus 416 ~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~ 489 (558)
+...++.+.+..+|.++...-++. -...|..+... -..+.+..+.+...+.+ .|..--...+.-+-.-|..
T Consensus 141 -~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 -KYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred -HHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 333355566666666554432110 01233333221 12334445555555543 3333333444555555666
Q ss_pred cCCHhHHHHHHHHHHhC
Q 008633 490 IGQLENAVLVMEESLRK 506 (558)
Q Consensus 490 ~g~~~~A~~~~~~m~~~ 506 (558)
..++++|++++....+.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 66777777777766554
No 346
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.59 E-value=7 Score=24.75 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=20.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 008633 517 KLSNKLLASNKLESAYNLFRKIKIARQ 543 (558)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~m~~~~~ 543 (558)
.|..+|...|+.+.|.++++++...+-
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 467788888888888888888875443
No 347
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.51 E-value=13 Score=26.98 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=21.2
Q ss_pred cCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhHHHHH
Q 008633 454 GFGKCGMLLDLWHEMQESGYPSD--GEIYEYVIAGLCNIGQLENAVLV 499 (558)
Q Consensus 454 ~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~ 499 (558)
...+.++|+..|....+.-..+. ..++..++.+++..|++++++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544321111 12444455555555555555444
No 348
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=72.27 E-value=12 Score=35.41 Aligned_cols=93 Identities=12% Similarity=-0.086 Sum_probs=56.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh
Q 008633 415 EPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLE 494 (558)
Q Consensus 415 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 494 (558)
.-|.++|.+++|+..|....... +-+.+++..-..+|.+..++..|+.-.......+ ..-...|..-+.+-...|+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 56778888888888887766543 2266777777777888888777776666555432 111223444444444445666
Q ss_pred HHHHHHHHHHhCCCCCC
Q 008633 495 NAVLVMEESLRKGFCPS 511 (558)
Q Consensus 495 ~A~~~~~~m~~~g~~p~ 511 (558)
+|.+-++..++. .|+
T Consensus 183 EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 183 EAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHhHHHHHhh--Ccc
Confidence 666666666643 565
No 349
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.27 E-value=12 Score=27.17 Aligned_cols=48 Identities=13% Similarity=0.009 Sum_probs=38.9
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 008633 488 CNIGQLENAVLVMEESLRKGFCPS--RLVYSKLSNKLLASNKLESAYNLF 535 (558)
Q Consensus 488 ~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~ 535 (558)
....+.++|+..|+..+++-..+. -.++..|+.+|+..|++++++++-
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred hccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377889999999999998743333 467888899999999999988864
No 350
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.23 E-value=1.6e+02 Score=32.55 Aligned_cols=116 Identities=20% Similarity=0.188 Sum_probs=63.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCCHHHH---
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD---SLTFSFLIEGLGRAGRI--DDAIEVFDTMKEKGCGPDTNAY--- 340 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~--~~a~~~~~~m~~~g~~p~~~~~--- 340 (558)
-|..|+..|...|+.++|+++|.+....--.-| ...+-.++..+.+.+.. +-..+.-+........-...++
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 478889999999999999999988876320011 12233344444444433 3333333333322111000011
Q ss_pred ---------HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 008633 341 ---------NAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLK 384 (558)
Q Consensus 341 ---------~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 384 (558)
...+-.|.+....+-+..+++.+....-.++..-.+.++..|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 11223455666677777777777665545566666666666654
No 351
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=72.14 E-value=85 Score=29.25 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=30.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHHhCCHHHHHHH
Q 008633 169 IVKALGRRKFFDFMCNVLSDMAKEGVNPDLETL-------SIVMDSFIRAGQVYKAIQM 220 (558)
Q Consensus 169 li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~-------~~li~~~~~~g~~~~A~~~ 220 (558)
+.+-..+.+++++|+..+.+....|+..|..+. ..+...|...|+...--+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 344556667777777777777777766665433 3344455555554443333
No 352
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=71.73 E-value=52 Score=30.54 Aligned_cols=89 Identities=9% Similarity=-0.029 Sum_probs=48.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 008633 168 VIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQ-- 245 (558)
Q Consensus 168 ~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~-- 245 (558)
.=|.+++..+++.+++...-+--+.--+........-|-.|.+.|.+..+.++-..-.+..-.-+..-|.+++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 346677777777777666554433211223344555556677777777777766655542212223335555555433
Q ss_pred ---cCCHhHHHHHH
Q 008633 246 ---RLHVGAASSLF 256 (558)
Q Consensus 246 ---~~~~~~A~~~~ 256 (558)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 36666665554
No 353
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=71.60 E-value=58 Score=27.11 Aligned_cols=50 Identities=16% Similarity=0.279 Sum_probs=25.1
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 008633 315 AGRIDDAIEVFDTMKEKGCG-PDTNAYNAVISNYISVGDFDECMKYYKGMSSY 366 (558)
Q Consensus 315 ~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 366 (558)
.++.+++..+++.|.-..+. +...++.. -.+...|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhcc
Confidence 55566666666655544221 12223322 2345566666666666666554
No 354
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=71.37 E-value=76 Score=28.35 Aligned_cols=82 Identities=11% Similarity=-0.029 Sum_probs=43.5
Q ss_pred HhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 249 VGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTM 328 (558)
Q Consensus 249 ~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 328 (558)
+.-|.--|.+...-.|.-...||.|.--+...|+++.|.+.|+...+....-+-...|.-| ++.-.|++.-|.+=+-..
T Consensus 81 ~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~f 159 (297)
T COG4785 81 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAF 159 (297)
T ss_pred HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHH
Confidence 3334434444333334445667777777777788888887777777653222212222222 223346666666555554
Q ss_pred HHC
Q 008633 329 KEK 331 (558)
Q Consensus 329 ~~~ 331 (558)
-+.
T Consensus 160 YQ~ 162 (297)
T COG4785 160 YQD 162 (297)
T ss_pred Hhc
Confidence 444
No 355
>PRK13342 recombination factor protein RarA; Reviewed
Probab=71.11 E-value=1.2e+02 Score=30.54 Aligned_cols=42 Identities=17% Similarity=0.059 Sum_probs=24.1
Q ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008633 270 YNIVISGWSK---LGQVVEMERVLKEIVAEGFSPDSLTFSFLIEG 311 (558)
Q Consensus 270 ~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 311 (558)
+..++.++.+ .++.+.|+.++..|.+.|..|....-..++.+
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3344444443 46777777777777777766654444433333
No 356
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=71.09 E-value=1.3e+02 Score=31.93 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008633 162 DVKSYNVIVKALGRRKFFDFMCNVLSDM 189 (558)
Q Consensus 162 ~~~~~~~li~~~~~~~~~~~a~~l~~~m 189 (558)
+..-|+ .+..+.-.|.++.|..++...
T Consensus 148 ~p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 148 DPDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp SHHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred chhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 355566 788888899999999998544
No 357
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=70.77 E-value=78 Score=28.26 Aligned_cols=159 Identities=15% Similarity=0.197 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHH
Q 008633 336 DTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISG--LLKSRKVADALEVFEEMLDRGI-VPSTGTITS 412 (558)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ 412 (558)
-+.+||-|.-.+...|+++.|.+.|+...+.. |. .-|..+-++ +.-.|++.-|.+-+....+.+. .|-...|--
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY 174 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY 174 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccC--Cc-chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHH
Confidence 35678888888889999999999999888753 22 123333332 3346888888877777666532 222222222
Q ss_pred HHHHHHhcCChhHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-------HHHHHHHH
Q 008633 413 FLEPLCSYGPPHAAMMMY-KKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSD-------GEIYEYVI 484 (558)
Q Consensus 413 ll~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-------~~~~~~li 484 (558)
++ -..-++.+|..-+ ++... .|..-|...|-.|. .|++.+ ..+++.+.... ..+ ..||-.+.
T Consensus 175 l~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~y-LgkiS~-e~l~~~~~a~a-~~n~~~Ae~LTEtyFYL~ 244 (297)
T COG4785 175 LN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFY-LGKISE-ETLMERLKADA-TDNTSLAEHLTETYFYLG 244 (297)
T ss_pred HH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHH-HhhccH-HHHHHHHHhhc-cchHHHHHHHHHHHHHHH
Confidence 22 1223445554333 33332 23333433332222 122211 22333333211 111 34777788
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCC
Q 008633 485 AGLCNIGQLENAVLVMEESLRKG 507 (558)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~m~~~g 507 (558)
.-+...|+.++|..+|+-.+...
T Consensus 245 K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 245 KYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHhccccHHHHHHHHHHHHHHh
Confidence 88889999999999999887653
No 358
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=69.77 E-value=1.6e+02 Score=31.47 Aligned_cols=89 Identities=16% Similarity=0.048 Sum_probs=49.4
Q ss_pred HHcCCChhHHHHHHHHHHHCC--CC----CCHHHHHHHHHH--HHhcCCHhHHHHHHH--------HHHhCCCCCCHHHH
Q 008633 452 LSGFGKCGMLLDLWHEMQESG--YP----SDGEIYEYVIAG--LCNIGQLENAVLVME--------ESLRKGFCPSRLVY 515 (558)
Q Consensus 452 ~~~~g~~~~A~~~~~~m~~~~--~~----p~~~~~~~li~~--~~~~g~~~~A~~~~~--------~m~~~g~~p~~~~~ 515 (558)
.+-.+++..|......|.+.. .+ .....+..++.| +...|+.+.|...|. .....+...+..++
T Consensus 371 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~il 450 (608)
T PF10345_consen 371 NFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYIL 450 (608)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHH
Confidence 345688888999888887521 11 112233333333 445689999999997 44445544444444
Q ss_pred HHH--HHHHHhcCC--HHH--HHHHHHHHHH
Q 008633 516 SKL--SNKLLASNK--LES--AYNLFRKIKI 540 (558)
Q Consensus 516 ~~l--~~~~~~~g~--~~~--A~~~~~~m~~ 540 (558)
..| +..+...+. .++ +.++++.+..
T Consensus 451 a~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p 481 (608)
T PF10345_consen 451 AALNLAIILQYESSRDDSESELNELLEQIEP 481 (608)
T ss_pred HHHHHHHHhHhhcccchhhhHHHHHHHhcCc
Confidence 442 222222332 223 6677766653
No 359
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=69.09 E-value=25 Score=30.99 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 509 CPSRLVYSKLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 509 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
.|++.+|..++.++...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666677777777666666653
No 360
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.10 E-value=13 Score=23.56 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=9.0
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 008633 380 SGLLKSRKVADALEVFEEML 399 (558)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~m~ 399 (558)
.+|...|+.+.|.+++++..
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 34444444444444444444
No 361
>PRK12798 chemotaxis protein; Reviewed
Probab=67.71 E-value=1.3e+02 Score=29.77 Aligned_cols=73 Identities=23% Similarity=0.211 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHH--HhcCCHHHHHHHHHHHHHhcCCchhhhh
Q 008633 478 EIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKL--LASNKLESAYNLFRKIKIARQNDYARRL 550 (558)
Q Consensus 478 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 550 (558)
..|..+...-.-.|+.+-|...-++.....-..+ ...-..|-.+. .-..++++|.+.+..+....+.+....+
T Consensus 258 ~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~Dr~L 333 (421)
T PRK12798 258 ELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERDRAL 333 (421)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhhHHH
Confidence 3566666666666776666666666654421111 11111111111 2244566666666666655555554443
No 362
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.33 E-value=1.1e+02 Score=28.69 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=47.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHH
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMK-----EKGCGPDTNAY 340 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~~~ 340 (558)
+.+.....|..+|.+.+|..+.+....-. +.+...+-.++..+...|+--.+.+-++.+. +.|+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 34556677778888888888877777653 4566777778888888888666666666553 23665554443
No 363
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.76 E-value=1.1e+02 Score=28.31 Aligned_cols=207 Identities=9% Similarity=0.032 Sum_probs=124.5
Q ss_pred CCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--C
Q 008633 263 VLFNVMTYNIVISG-WSKLGQVVEMERVLKEIVAEGFSPDSL---TFSFLIEGLGRAGRIDDAIEVFDTMKEK---G--C 333 (558)
Q Consensus 263 ~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~m~~~---g--~ 333 (558)
..||+..-|..-.. -.+..+.++|+.-|.+..+..-+.... ....++....+.+++++..+.+.++..- . -
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr 101 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR 101 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence 44555543332211 124558899999999988753233333 4456788889999999999998887532 1 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----C
Q 008633 334 GPDTNAYNAVISNYISVGDFDECMKYYKGMSSY-NCEPNM----DTYTRLISGLLKSRKVADALEVFEEMLDRGI----V 404 (558)
Q Consensus 334 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~ 404 (558)
.-+..+.|++++.-....+.+-..++|+.-.+. .-..|. .|-+-|...|...+.+.+...+++++...-- .
T Consensus 102 NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe 181 (440)
T KOG1464|consen 102 NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE 181 (440)
T ss_pred cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence 224556788888777777777777777654321 001122 2335677778888888888888888875411 1
Q ss_pred CC-------HHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHH----HHHcCCChhHHHH-HHHHHH
Q 008633 405 PS-------TGTITSFLEPLCSYGPPHAAMMMYKKARKV-GCKLSLTAYKLLLR----RLSGFGKCGMLLD-LWHEMQ 469 (558)
Q Consensus 405 p~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~----~~~~~g~~~~A~~-~~~~m~ 469 (558)
-| ...|..-|..|..+.+-.....+|++.... .--|.+.....+-. +..+.|++++|.. +|+...
T Consensus 182 dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 182 DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 11 235666666677777767777777766542 23344444433322 2345577777753 444443
No 364
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=65.36 E-value=2e+02 Score=30.83 Aligned_cols=185 Identities=12% Similarity=0.114 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHH-hCCCCCCH--HHHHHHHHHHH-hcCCHhHHHHHHHHhhcCCC-CChh-----hHHHHHHHHHhcCCH
Q 008633 214 VYKAIQMLGRLE-DFGLKFDA--ESLNVVLWCLC-QRLHVGAASSLFNSMKGKVL-FNVM-----TYNIVISGWSKLGQV 283 (558)
Q Consensus 214 ~~~A~~~~~~~~-~~g~~~~~--~~~~~ll~~~~-~~~~~~~A~~~~~~m~~~~~-~~~~-----~~~~li~~~~~~g~~ 283 (558)
+..|++.++.+. +..+.|.. .++-.+...|. ...+++.|+..+++...... ++.. .-..++..+.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 556666666666 33333332 33444555554 45677777777776532211 1111 223455666666555
Q ss_pred HHHHHHHHHHHHc----CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHH--HhcCCH
Q 008633 284 VEMERVLKEIVAE----GFSPDSLTFSFL-IEGLGRAGRIDDAIEVFDTMKEKG---CGPDTNAYNAVISNY--ISVGDF 353 (558)
Q Consensus 284 ~~A~~~~~~m~~~----g~~p~~~t~~~l-l~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~--~~~g~~ 353 (558)
. |...+++..+. +..+-...+..+ +..+...++...|.+.++.+...- ..|-..++-.++.+. ...+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 5 77777665543 111122222222 222222367777777776665432 222333333333332 234555
Q ss_pred HHHHHHHHHhhhCCC---------CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 008633 354 DECMKYYKGMSSYNC---------EPNMDTYTRLISGLL--KSRKVADALEVFEEML 399 (558)
Q Consensus 354 ~~A~~~~~~m~~~~~---------~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~ 399 (558)
+++.+..+++..... .|-..+|..+++.++ ..|+++.+...++++.
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666666643211 234455555555443 4566666666665553
No 365
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=65.35 E-value=1e+02 Score=27.63 Aligned_cols=34 Identities=6% Similarity=0.042 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCch
Q 008633 513 LVYSKLSNKLLASNKLESAYNLFRKIKIARQNDY 546 (558)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 546 (558)
.+.-.++....+.|+.++|.+.|.++...+-...
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 3444555666677777777777777765544433
No 366
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.73 E-value=2.3e+02 Score=31.44 Aligned_cols=61 Identities=11% Similarity=0.236 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHhCCH--HHHHHHHHHHH
Q 008633 165 SYNVIVKALGRRKFFDFMCNVLSDMAKEGV---NPDLETLSIVMDSFIRAGQV--YKAIQMLGRLE 225 (558)
Q Consensus 165 ~~~~li~~~~~~~~~~~a~~l~~~m~~~g~---~~~~~t~~~li~~~~~~g~~--~~A~~~~~~~~ 225 (558)
-|..|+..|...|+.++|+++|.+....-- .--..-+..++..+.+.+.. +...+.-.+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl 571 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVL 571 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhh
Confidence 388999999999999999999999876320 01112333355555554444 44444444443
No 367
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=64.73 E-value=43 Score=26.84 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=30.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 008633 182 MCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLED 226 (558)
Q Consensus 182 a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~ 226 (558)
..+-+..+..-.+.|++......+++|-+.+++..|+.+|+-++.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444445556667777777777777777777777777776663
No 368
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=64.72 E-value=62 Score=24.83 Aligned_cols=85 Identities=14% Similarity=0.225 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 318 IDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEE 397 (558)
Q Consensus 318 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 397 (558)
.++|..+-+.+...+.. ...+--+-+..+...|++++|..+.+.+. .||...|.+|-. .+.|..+++..-+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 45555555555544322 22222223345667777777777766652 677777765543 356666666666666
Q ss_pred HHHCCCCCCHHHH
Q 008633 398 MLDRGIVPSTGTI 410 (558)
Q Consensus 398 m~~~~~~p~~~~~ 410 (558)
|..+| .|....|
T Consensus 94 la~sg-~p~lq~F 105 (115)
T TIGR02508 94 LAASG-DPRLQTF 105 (115)
T ss_pred HHhCC-CHHHHHH
Confidence 66665 3443333
No 369
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=64.35 E-value=83 Score=26.14 Aligned_cols=50 Identities=12% Similarity=0.171 Sum_probs=27.1
Q ss_pred ChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008633 266 NVMTYNIVISGWSKLGQ-VVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRA 315 (558)
Q Consensus 266 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 315 (558)
+..+|++++.+..+..- ---+..+|.-|++.+.+++..-|..+|.++.+-
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 34455666666544444 233455555555555566666666666655443
No 370
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=64.21 E-value=1e+02 Score=27.17 Aligned_cols=90 Identities=16% Similarity=0.093 Sum_probs=59.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 008633 380 SGLLKSRKVADALEVFEEMLDRGIVPST-----GTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSG 454 (558)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 454 (558)
.-+.++|++++|..-|.+.+.. +++.. ..|..-..++.+.+.++.|+.-..+.++.+. ........-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHh
Confidence 4577889999999999888875 22222 2333334456667788888877777776551 112222223456778
Q ss_pred CCChhHHHHHHHHHHHC
Q 008633 455 FGKCGMLLDLWHEMQES 471 (558)
Q Consensus 455 ~g~~~~A~~~~~~m~~~ 471 (558)
..++++|++=|+.+.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 88888898888888876
No 371
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=63.94 E-value=50 Score=26.49 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=39.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008633 461 LLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLS 519 (558)
Q Consensus 461 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 519 (558)
..+-+......++.|+......-+.+|.+.+++..|.++|+-...+ ..+...+|..++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 3445556666777888888888888888888888888888866654 222233454444
No 372
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=63.73 E-value=65 Score=24.72 Aligned_cols=60 Identities=17% Similarity=0.340 Sum_probs=35.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH
Q 008633 309 IEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTY 375 (558)
Q Consensus 309 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 375 (558)
+..+.+.|++++|..+.+.+ +.||...|-+|.. .+.|.-+++..-+.+|..+| .|....|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34456677777777665544 4566666655443 45666666666666666665 4444433
No 373
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=63.36 E-value=54 Score=25.67 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 375 YTRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 375 ~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
|..|+.-|...|..++|.+++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 67778888888888888888877766
No 374
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=62.91 E-value=55 Score=26.46 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 495 NAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRK 537 (558)
Q Consensus 495 ~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 537 (558)
++..+|+.|..+|+--. +..|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66777777766655444 56666666667777777777777654
No 375
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=62.45 E-value=20 Score=24.66 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 373 DTYTRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
.-.-.+|.+|...|++++|.+.++++.+
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344556666666666666666665543
No 376
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=62.34 E-value=18 Score=24.97 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHH
Q 008633 480 YEYVIAGLCNIGQLENAVLVMEESL 504 (558)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~~~m~ 504 (558)
.-.+|.+|...|++++|.++++++.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445555555555555555555544
No 377
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=62.28 E-value=35 Score=32.53 Aligned_cols=52 Identities=8% Similarity=0.013 Sum_probs=30.9
Q ss_pred HHHHHhCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHh
Q 008633 206 DSFIRAGQVYKAIQMLGRLEDFGLKF-DAESLNVVLWCLCQRLHVGAASSLFNSM 259 (558)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m 259 (558)
+-|.+.|.+++|++.|...... .| +.+++..-..+|.+...+..|..-.+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 5566667777777777665543 33 5566666666666666666555544433
No 378
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=61.66 E-value=1.1e+02 Score=27.55 Aligned_cols=65 Identities=20% Similarity=0.327 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHHHhCCHHHHHHHHHHHH
Q 008633 159 VAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNP---DLETL--SIVMDSFIRAGQVYKAIQMLGRLE 225 (558)
Q Consensus 159 ~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~---~~~t~--~~li~~~~~~g~~~~A~~~~~~~~ 225 (558)
+.+...-+|.||--|.-...+.+|-+.|.. ..|+.| |..++ ..-|+.....|+.+.|++....+-
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 344444455554444444444444444432 223333 33332 233455566666666666665554
No 379
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=61.31 E-value=20 Score=33.57 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=27.6
Q ss_pred CCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 008633 160 AKDVKS-YNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLS 202 (558)
Q Consensus 160 ~~~~~~-~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~ 202 (558)
.|+..+ ||.-|....+.|++++|+.++++.++.|+.--..+|.
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 345544 5577777777777777777777777777654444443
No 380
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=59.36 E-value=1.5e+02 Score=27.54 Aligned_cols=26 Identities=12% Similarity=0.225 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 336 DTNAYNAVISNYISVGDFDECMKYYK 361 (558)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~~~~ 361 (558)
++.....+...|.+.|++.+|+..|-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 56677777788888888877776664
No 381
>PRK11619 lytic murein transglycosylase; Provisional
Probab=58.76 E-value=2.6e+02 Score=30.09 Aligned_cols=192 Identities=10% Similarity=0.047 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008633 339 AYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLC 418 (558)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 418 (558)
...--+......++++.+...+..|.... .-...-.-.+.+++...|+.++|...|+++... . +|-.++. ..
T Consensus 314 ~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~---~fYG~LA-a~ 385 (644)
T PRK11619 314 LLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---R---GFYPMVA-AQ 385 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---CcHHHHH-HH
Confidence 33444444456666666666666664432 123333445556655567777777766665321 1 1222221 12
Q ss_pred hcCChhHH-HHHHH-HHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 008633 419 SYGPPHAA-MMMYK-KARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENA 496 (558)
Q Consensus 419 ~~g~~~~a-~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 496 (558)
+.|..-.- ..... .... +... .-..-+..+...|....|...|..+.+. .+......+.......|..+.+
T Consensus 386 ~Lg~~~~~~~~~~~~~~~~--~~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~a 458 (644)
T PRK11619 386 RLGEEYPLKIDKAPKPDSA--LTQG--PEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLS 458 (644)
T ss_pred HcCCCCCCCCCCCCchhhh--hccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHH
Confidence 22221000 00000 0000 0000 0111234456678888888888777764 2444555566666677777777
Q ss_pred HHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchhh
Q 008633 497 VLVMEESLRK-----GFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQNDYAR 548 (558)
Q Consensus 497 ~~~~~~m~~~-----g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 548 (558)
+......... ++ |. .|...+..+.+.-.++.+.-.----++++..|++.
T Consensus 459 i~~~~~~~~~~~~~~rf-p~--~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~ 512 (644)
T PRK11619 459 VQATIAGKLWDHLEERF-PL--AWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKAR 512 (644)
T ss_pred HHHHhhchhHHHHHHhC-Cc--chHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCc
Confidence 7665433211 11 21 24445555544444444443322333455555543
No 382
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=58.72 E-value=39 Score=21.79 Aligned_cols=32 Identities=13% Similarity=0.255 Sum_probs=16.9
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008633 175 RRKFFDFMCNVLSDMAKEGVNPDLETLSIVMD 206 (558)
Q Consensus 175 ~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~ 206 (558)
+.|-..++..++++|.+.|+..+...|..+++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 44555555555555555555555555544443
No 383
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=57.23 E-value=46 Score=21.47 Aligned_cols=33 Identities=12% Similarity=0.171 Sum_probs=19.7
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008633 488 CNIGQLENAVLVMEESLRKGFCPSRLVYSKLSN 520 (558)
Q Consensus 488 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 520 (558)
.+.|-..++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345556666666666666666666655555443
No 384
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.68 E-value=1.5e+02 Score=26.06 Aligned_cols=127 Identities=13% Similarity=0.033 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHH----
Q 008633 163 VKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETL--SIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESL---- 236 (558)
Q Consensus 163 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~--~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~---- 236 (558)
...|..++...- .+.. +.....+.+........--++ ..+...+...|++++|+.-++..... +....+
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~ 128 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHH
Confidence 345666666664 2333 455555666554211111112 22345566778888888777776643 122222
Q ss_pred -HHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008633 237 -NVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMT--YNIVISGWSKLGQVVEMERVLKEIVAEG 297 (558)
Q Consensus 237 -~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g 297 (558)
-.|.......|.+++|+.+++...+. +-.. ...-.+.+...|+-++|..-|.+..+.+
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~---~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEE---SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccc---cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 23444556667777777777666543 1111 2233455666677777777776666654
No 385
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=54.60 E-value=2e+02 Score=27.50 Aligned_cols=96 Identities=11% Similarity=0.114 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCH----H
Q 008633 338 NAYNAVISNYISVGDFDECMKYYKGMSS----YNCEPNMDTYTRLISG-LLKSRKVADALEVFEEMLDRGIVPST----G 408 (558)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~----~ 408 (558)
..+-.....||+.|+.+.|++.+++..+ .|.+.|+..+..-+.. |....-+.+-++..+.+.+.|..-+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 3455566778888888888777765543 4556666555443322 33333344555555666666643332 2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008633 409 TITSFLEPLCSYGPPHAAMMMYKKARK 435 (558)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (558)
+|..+- |....++.+|-.+|-+...
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 333332 2334566777776665543
No 386
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=54.50 E-value=20 Score=19.27 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHH
Q 008633 480 YEYVIAGLCNIGQLENAVLVMEESL 504 (558)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~~~m~ 504 (558)
|..+...+...|++++|...+++.+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444555555555555555555554
No 387
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=54.19 E-value=2e+02 Score=27.27 Aligned_cols=19 Identities=21% Similarity=0.336 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHcCCChhHH
Q 008633 443 TAYKLLLRRLSGFGKCGML 461 (558)
Q Consensus 443 ~~~~~li~~~~~~g~~~~A 461 (558)
.+|..|+.+++..|+.+-.
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 4566666666666665543
No 388
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.84 E-value=41 Score=29.55 Aligned_cols=32 Identities=22% Similarity=0.170 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 008633 195 NPDLETLSIVMDSFIRAGQVYKAIQMLGRLED 226 (558)
Q Consensus 195 ~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~ 226 (558)
.|+..+|..++.++...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666666666666666666666666655554
No 389
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=53.36 E-value=1.7e+02 Score=28.08 Aligned_cols=58 Identities=12% Similarity=0.178 Sum_probs=28.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 273 VISGWSKLGQVVEMERVLKEIVAE---GFSPDSLTFS--FLIEGLGRAGRIDDAIEVFDTMKE 330 (558)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~--~ll~~~~~~g~~~~a~~~~~~m~~ 330 (558)
++...-+.++.++|+++++++.+. --.|+.+.|. .+.+.+...|+..++.+++++..+
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 333444445666666666666542 1234444443 223334445555566655555554
No 390
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=53.33 E-value=1.4e+02 Score=26.91 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=12.2
Q ss_pred HHHHHHcCCChhHHHHHHHHHH
Q 008633 448 LLRRLSGFGKCGMLLDLWHEMQ 469 (558)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~ 469 (558)
-|......|+.++|++....+.
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHhC
Confidence 3445555666666665555543
No 391
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=52.99 E-value=2.2e+02 Score=27.33 Aligned_cols=14 Identities=21% Similarity=0.499 Sum_probs=7.6
Q ss_pred CCHHHHHHHHHHHH
Q 008633 386 RKVADALEVFEEML 399 (558)
Q Consensus 386 g~~~~A~~~~~~m~ 399 (558)
.++.+|-.+|-+..
T Consensus 195 R~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 195 RNFKEAADLFLDSV 208 (393)
T ss_pred HhHHHHHHHHHHHc
Confidence 45556655555543
No 392
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=52.98 E-value=2.4e+02 Score=27.96 Aligned_cols=57 Identities=18% Similarity=0.248 Sum_probs=40.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHHC
Q 008633 344 ISNYISVGDFDECMKYYKGMSSYNCEPNMD--TYTRLISGLLK--SRKVADALEVFEEMLDR 401 (558)
Q Consensus 344 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~--~g~~~~A~~~~~~m~~~ 401 (558)
+..+.+.+++..|.++|+++.+. ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33455889999999999999886 444444 45555555543 56788899988887664
No 393
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=51.56 E-value=1.9e+02 Score=26.31 Aligned_cols=83 Identities=10% Similarity=0.074 Sum_probs=35.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008633 343 VISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGP 422 (558)
Q Consensus 343 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 422 (558)
-+..|.+.-++.-|-...+++.+ |= .+ ...|--|.+..+.+--.++.+-....++.-+..-..+++ +...|+
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiE----PI-QS-RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GD 207 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIE----PI-QS-RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGD 207 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhh----hH-Hh-hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccch
Confidence 34455555555555444444442 21 11 111222333333333333333333444444444444444 455666
Q ss_pred hhHHHHHHHHH
Q 008633 423 PHAAMMMYKKA 433 (558)
Q Consensus 423 ~~~a~~~~~~~ 433 (558)
..+|+..++.-
T Consensus 208 MRQalNnLQst 218 (333)
T KOG0991|consen 208 MRQALNNLQST 218 (333)
T ss_pred HHHHHHHHHHH
Confidence 66666655543
No 394
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.97 E-value=31 Score=32.37 Aligned_cols=30 Identities=20% Similarity=0.385 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 008633 480 YEYVIAGLCNIGQLENAVLVMEESLRKGFC 509 (558)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 509 (558)
|+..|....+.|++++|+.+++|+.+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345555555555555555555555555543
No 395
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=50.79 E-value=2.3e+02 Score=27.08 Aligned_cols=110 Identities=13% Similarity=0.178 Sum_probs=58.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHcCCChhHHH
Q 008633 385 SRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAY--KLLLRRLSGFGKCGMLL 462 (558)
Q Consensus 385 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~ 462 (558)
..-+.+|+++|++..+.+ ..+|+.- +.+...|...+ .+.+.+ .++.+| ..|.-+..+.|+..+|.
T Consensus 229 a~Ti~~AE~l~k~ALka~----e~~yr~s-qq~qh~~~~~d------a~~rRD--tnvl~YIKRRLAMCARklGrlrEA~ 295 (556)
T KOG3807|consen 229 ATTIVDAERLFKQALKAG----ETIYRQS-QQCQHQSPQHE------AQLRRD--TNVLVYIKRRLAMCARKLGRLREAV 295 (556)
T ss_pred hhhHHHHHHHHHHHHHHH----HHHHhhH-HHHhhhccchh------hhhhcc--cchhhHHHHHHHHHHHHhhhHHHHH
Confidence 345667777887776643 2233311 11222222222 223332 223333 34445555678888888
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 008633 463 DLWHEMQES-GYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKG 507 (558)
Q Consensus 463 ~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 507 (558)
+.++.+.+. .+..-..+...+|.++....-+.+...++-+.-+..
T Consensus 296 K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 296 KIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred HHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 888877653 111112244567888887777777777766655443
No 396
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=50.11 E-value=1.1e+02 Score=25.41 Aligned_cols=60 Identities=17% Similarity=0.010 Sum_probs=27.9
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008633 466 HEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASN 526 (558)
Q Consensus 466 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 526 (558)
+.+.+.|++++. --..++..+...++.-.|.++++++.+.+...+..|...-++.+...|
T Consensus 10 ~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334444544433 223344445555444556666666655544444333333334444444
No 397
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=49.58 E-value=21 Score=22.85 Aligned_cols=42 Identities=10% Similarity=0.028 Sum_probs=31.3
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008633 149 FFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMA 190 (558)
Q Consensus 149 ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~ 190 (558)
|.+|+..+..++.+...+..+.+-+-.++....++++++++.
T Consensus 1 lA~~i~~D~~FPK~~~~~~eI~~Yle~~~~~~~~~~~fd~aw 42 (46)
T PF06855_consen 1 LANDIFQDHSFPKQETDFDEISSYLESNYDYLESMEIFDRAW 42 (46)
T ss_dssp HHHHHHTSTTS-TT-SSHHHHHHHHHCHCCHHCCHHHHHHHH
T ss_pred ChhhhhhCcCCCCCCCCHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 346777788888999999999888888888777777777653
No 398
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=48.17 E-value=1.2e+02 Score=31.39 Aligned_cols=104 Identities=12% Similarity=-0.094 Sum_probs=60.4
Q ss_pred HHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 008633 209 IRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMER 288 (558)
Q Consensus 209 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 288 (558)
-..|+...|...+............+....|.+.+.+.|...+|..++.+...-......++..+.+++....+++.|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 34577777777766655433222333444556666666777777777665544333345566677777777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHH
Q 008633 289 VLKEIVAEGFSPDSLTFSFLIEGLG 313 (558)
Q Consensus 289 ~~~~m~~~g~~p~~~t~~~ll~~~~ 313 (558)
.|++..+... -+.+.-+.|...-|
T Consensus 698 ~~~~a~~~~~-~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 698 AFRQALKLTT-KCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHhcCC-CChhhHHHHHHHHH
Confidence 7777766531 23344444444333
No 399
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=47.35 E-value=33 Score=19.09 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=10.9
Q ss_pred HhHHHHHHHHhhcCCCCChhhHHHH
Q 008633 249 VGAASSLFNSMKGKVLFNVMTYNIV 273 (558)
Q Consensus 249 ~~~A~~~~~~m~~~~~~~~~~~~~l 273 (558)
.+.|..+|+++....+-+...|...
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHH
Confidence 4444445554444333344444433
No 400
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=47.23 E-value=1.2e+02 Score=22.80 Aligned_cols=20 Identities=10% Similarity=-0.019 Sum_probs=9.9
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 008633 520 NKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~m~ 539 (558)
......|++++|.+.+++..
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 33444555555555555543
No 401
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=46.49 E-value=95 Score=25.83 Aligned_cols=64 Identities=13% Similarity=0.138 Sum_probs=41.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 184 NVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLH 248 (558)
Q Consensus 184 ~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~ 248 (558)
++.+.+.+.|++++.. -..+++.+...++.-.|.++|+++.+.+...+..|.-..++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3445566677766543 345677777777778888888888887776666554444555555553
No 402
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=46.17 E-value=1.2e+02 Score=22.56 Aligned_cols=35 Identities=9% Similarity=0.123 Sum_probs=15.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008633 314 RAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDF 353 (558)
Q Consensus 314 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 353 (558)
..|+.+.|.+++..+. .|. ..|..++.++...|.-
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 48 NHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHH 82 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCch
Confidence 3344555555555544 322 1344444444444443
No 403
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=46.09 E-value=2.1e+02 Score=25.14 Aligned_cols=56 Identities=14% Similarity=0.123 Sum_probs=33.8
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCC--------------CCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 008633 447 LLLRRLSGFGKCGMLLDLWHEMQESGY--------------PSDGEIYEYVIAGLCNIGQLENAVLVMEE 502 (558)
Q Consensus 447 ~li~~~~~~g~~~~A~~~~~~m~~~~~--------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 502 (558)
+++-.|.+..++.+..++++.|.+..+ .+.-...|.....+.+.|.+|.|+.++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 344456666677777777776654322 22334556666667777777777776663
No 404
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=46.05 E-value=1.2e+02 Score=22.55 Aligned_cols=64 Identities=17% Similarity=0.083 Sum_probs=29.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 008633 183 CNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAA 252 (558)
Q Consensus 183 ~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A 252 (558)
.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. .|. ..|...+.++...|.-+-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchhhh
Confidence 3445555555532 22222222222223455666666666555 332 2455555555555544433
No 405
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=46.04 E-value=2.5e+02 Score=27.18 Aligned_cols=64 Identities=16% Similarity=0.186 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008633 458 CGMLLDLWHEMQESGYPSDG----EIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLL 523 (558)
Q Consensus 458 ~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 523 (558)
.+++..++..++.. -|+. ..|-++.......|.+++++.+|++++..|..|-...-..+++.+-
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34667777777664 4553 3677888888889999999999999999998888777777777665
No 406
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=45.59 E-value=3.5e+02 Score=27.67 Aligned_cols=92 Identities=14% Similarity=0.139 Sum_probs=65.0
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHhHHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 008633 446 KLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCN--IGQLENAVLVMEESLRK-GFCPSRLVYSKLSNKL 522 (558)
Q Consensus 446 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~ 522 (558)
+.+++-+...|-..+|...+..+.... +|....|..+|..=.. .-+...+..+++.|... | .|+..|...+.-=
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e 540 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEE 540 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhh
Confidence 456666777788888888888888764 6677778777764322 22377788888888764 5 6667777766666
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 008633 523 LASNKLESAYNLFRKIKI 540 (558)
Q Consensus 523 ~~~g~~~~A~~~~~~m~~ 540 (558)
...|..+.+-.++-+..+
T Consensus 541 ~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 541 LPLGRPENCGQIYWRAMK 558 (568)
T ss_pred ccCCCcccccHHHHHHHH
Confidence 678888887777665543
No 407
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=45.52 E-value=2e+02 Score=24.91 Aligned_cols=42 Identities=24% Similarity=0.240 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 008633 388 VADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVG 437 (558)
Q Consensus 388 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 437 (558)
+++|.+.|+...+. .|+..+|+.-+... .+|-.++.++.+.+
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 34444455554443 56666666665543 23555555555543
No 408
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=45.20 E-value=1.5e+02 Score=23.19 Aligned_cols=80 Identities=18% Similarity=0.130 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 008633 212 GQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLK 291 (558)
Q Consensus 212 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 291 (558)
...++|..+.+.+...+. ....+--.-+..+...|++++| +..-.....||...|-+|-. .+.|--+++...+.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 345666666666665542 1222222334445666666666 22222334456666655433 35566666666666
Q ss_pred HHHHcC
Q 008633 292 EIVAEG 297 (558)
Q Consensus 292 ~m~~~g 297 (558)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 665544
No 409
>PF13934 ELYS: Nuclear pore complex assembly
Probab=45.01 E-value=1.8e+02 Score=26.38 Aligned_cols=128 Identities=11% Similarity=0.062 Sum_probs=76.4
Q ss_pred HHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008633 409 TITSFLEPLCS--YGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAG 486 (558)
Q Consensus 409 ~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 486 (558)
.|..+++++.. .+++++|.+.+..- .+.| ..-..++.++...|+.+.|+.+++.+.-.. .+......++..
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~--~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~ 150 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIP--WFPDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCc--ccHHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH
Confidence 34456666655 46777777666221 1122 223357888888999999999998875321 223334444444
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchhhhh
Q 008633 487 LCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQNDYARRL 550 (558)
Q Consensus 487 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 550 (558)
..++.+.+|..+.+...+. -....+..++..+..... + ...++++......+.-..+
T Consensus 151 -La~~~v~EAf~~~R~~~~~---~~~~l~e~l~~~~~~~~~--~-~~~~~~Ll~LPl~~~EE~~ 207 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDE---LRRRLFEQLLEHCLEECA--R-SGRLDELLSLPLDEEEEQW 207 (226)
T ss_pred -HHcCCHHHHHHHHHhCchh---hhHHHHHHHHHHHHHHhh--h-hhHHHHHHhCCCChHHHHH
Confidence 6678999999888765542 114577778887775543 1 2225555555555544433
No 410
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=44.63 E-value=43 Score=23.36 Aligned_cols=51 Identities=10% Similarity=0.162 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008633 474 PSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLAS 525 (558)
Q Consensus 474 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 525 (558)
.|....++.++...+...-.++++.++.++...|. .+..+|..-++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 34556778888888888888888888888888874 5667777776666653
No 411
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=44.41 E-value=1.7e+02 Score=25.43 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=13.5
Q ss_pred HHHHHhcCCHHHHHHHHHHhhh
Q 008633 344 ISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 344 i~~~~~~g~~~~A~~~~~~m~~ 365 (558)
+-.|.+.|.+++|.+++++..+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3456666666666666666654
No 412
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.21 E-value=4.8e+02 Score=28.87 Aligned_cols=97 Identities=14% Similarity=0.103 Sum_probs=62.3
Q ss_pred HHcCCChhHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHh---------------cCCHhHHHHHHHHHHhCCCCC
Q 008633 452 LSGFGKCGMLLDLWHEMQES------GYPSDGEIYEYVIAGLCN---------------IGQLENAVLVMEESLRKGFCP 510 (558)
Q Consensus 452 ~~~~g~~~~A~~~~~~m~~~------~~~p~~~~~~~li~~~~~---------------~g~~~~A~~~~~~m~~~g~~p 510 (558)
+...|++.+|.+.|+.+.-. +-..+..--..+|..++. .+..+.+.++-.-.....+.|
T Consensus 1001 ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp 1080 (1202)
T KOG0292|consen 1001 LTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQP 1080 (1202)
T ss_pred hhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCc
Confidence 34579999999999987621 112233334444444421 234555544444444456666
Q ss_pred CH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchhh
Q 008633 511 SR--LVYSKLSNKLLASNKLESAYNLFRKIKIARQNDYAR 548 (558)
Q Consensus 511 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 548 (558)
-. .+....++.+.+.+++..|-.+-.++.+.+..|+.+
T Consensus 1081 ~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1081 MHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHH
Confidence 53 456677888999999999999999998887766554
No 413
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=43.94 E-value=1.7e+02 Score=26.92 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=6.3
Q ss_pred CCHHHHHHHHHHhh
Q 008633 351 GDFDECMKYYKGMS 364 (558)
Q Consensus 351 g~~~~A~~~~~~m~ 364 (558)
++.+.+..+.+.+.
T Consensus 206 ~~~~~~~~iv~WL~ 219 (246)
T PF07678_consen 206 GDLEEASPIVRWLI 219 (246)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 44444444444443
No 414
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.80 E-value=29 Score=28.18 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=12.9
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCC
Q 008633 489 NIGQLENAVLVMEESLRKGFCPS 511 (558)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~g~~p~ 511 (558)
..|.-.+|..+|++|++.|-+||
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc
Confidence 34445556666666666665554
No 415
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=43.69 E-value=2.8e+02 Score=26.03 Aligned_cols=16 Identities=25% Similarity=0.586 Sum_probs=9.1
Q ss_pred CHHHHHHHHHHhhhCC
Q 008633 352 DFDECMKYYKGMSSYN 367 (558)
Q Consensus 352 ~~~~A~~~~~~m~~~~ 367 (558)
+..+|.++|++..+.|
T Consensus 128 d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 128 DLVKALKYYEKAAKLG 143 (292)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 5555555555555555
No 416
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.66 E-value=3.4e+02 Score=26.95 Aligned_cols=62 Identities=16% Similarity=0.240 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 304 TFSFLIEGLGRAGRIDDAIEVFDTMKEKGC--GPDTNAYNAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 304 t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
.+.-+..-|...|+++.|++.|.+...--. .-.+..|-.+|..-.-.|+|.....+..+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 455566666667777777777766433210 11223444455555556666666666666554
No 417
>PHA03100 ankyrin repeat protein; Provisional
Probab=43.44 E-value=3.4e+02 Score=27.80 Aligned_cols=11 Identities=0% Similarity=0.072 Sum_probs=4.7
Q ss_pred CHHHHHHHHHH
Q 008633 527 KLESAYNLFRK 537 (558)
Q Consensus 527 ~~~~A~~~~~~ 537 (558)
..+++...++.
T Consensus 431 ~i~~~~~~~~~ 441 (480)
T PHA03100 431 LIKKIIKKLNN 441 (480)
T ss_pred HHHHHHHHHHh
Confidence 34444444443
No 418
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=42.78 E-value=24 Score=28.58 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=24.9
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008633 452 LSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGL 487 (558)
Q Consensus 452 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 487 (558)
+-..|.-.+|-.+|+.|.+.|-+|| .|+.|+...
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 3345666778888999999888887 477777653
No 419
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=42.71 E-value=2.4e+02 Score=24.94 Aligned_cols=50 Identities=12% Similarity=0.061 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCh
Q 008633 408 GTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLT-AYKLLLRRLSGFGKC 458 (558)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~ 458 (558)
...+.++..|...|+++.|.++|.-+.+.. ..|.. .|..=+..+.+.+.-
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~ 92 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQ 92 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCc
Confidence 456677778888888888888888887753 33433 233333344444433
No 420
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=42.42 E-value=3.2e+02 Score=26.33 Aligned_cols=118 Identities=18% Similarity=0.133 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHhHHHHHH
Q 008633 424 HAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCN---IGQLENAVLVM 500 (558)
Q Consensus 424 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~ 500 (558)
+.-+.+++++.+.+ +-+......++..+.+....++..+.|+++.... +-+...|...|..... .-.+++...+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 45556667666653 4566666777777777777777777787777652 2356677777665443 23455666666
Q ss_pred HHHHhC------CC------CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 008633 501 EESLRK------GF------CPS-----RLVYSKLSNKLLASNKLESAYNLFRKIKIARQ 543 (558)
Q Consensus 501 ~~m~~~------g~------~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 543 (558)
.+.++. +. .++ ..++..+...+..+|..+.|..+++-+.+.+.
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 655431 11 011 12333344445678888888888888877665
No 421
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=42.20 E-value=2e+02 Score=30.42 Aligned_cols=75 Identities=15% Similarity=0.177 Sum_probs=47.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhH------HHHHHHHHHHcCCCCCHHHHHHH
Q 008633 377 RLISGLLKSRKVADALEVFEEMLDR--GIVPSTGTITSFLEPLCSYGPPHA------AMMMYKKARKVGCKLSLTAYKLL 448 (558)
Q Consensus 377 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~------a~~~~~~~~~~~~~~~~~~~~~l 448 (558)
+|..+|..+|++..+.++++..... |-+.-...||..|+...+.|.++- |.++++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7888888888888888888887754 223334567777777777776542 223333222 34466777777
Q ss_pred HHHHHc
Q 008633 449 LRRLSG 454 (558)
Q Consensus 449 i~~~~~ 454 (558)
+++-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 655443
No 422
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=41.98 E-value=3.1e+02 Score=26.03 Aligned_cols=75 Identities=17% Similarity=0.267 Sum_probs=38.3
Q ss_pred HHHHHHHhcCCHHHHHHHHH-HhhhCCCCCCH----HHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008633 342 AVISNYISVGDFDECMKYYK-GMSSYNCEPNM----DTYTRLISGLLKSRKVA-DALEVFEEMLDRGIVPSTGTITSFLE 415 (558)
Q Consensus 342 ~li~~~~~~g~~~~A~~~~~-~m~~~~~~p~~----~~~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~p~~~~~~~ll~ 415 (558)
.|..-..+...+++...... +|.+.+ -|+. ..|..++++---+.+-+ -|.+.++.+ .+|..++.
T Consensus 260 ~L~~q~s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnKkeelva~qalrhl---------K~yaPLL~ 329 (412)
T KOG2297|consen 260 ELQEQVSEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNKKEELVAEQALRHL---------KQYAPLLA 329 (412)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHH---------HhhhHHHH
Confidence 34444444445555555444 344444 3443 34666666554442222 133333333 35667788
Q ss_pred HHHhcCChhHH
Q 008633 416 PLCSYGPPHAA 426 (558)
Q Consensus 416 ~~~~~g~~~~a 426 (558)
++|..|+.+..
T Consensus 330 af~s~g~sEL~ 340 (412)
T KOG2297|consen 330 AFCSQGQSELE 340 (412)
T ss_pred HHhcCChHHHH
Confidence 88888876654
No 423
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=41.92 E-value=3e+02 Score=25.88 Aligned_cols=25 Identities=12% Similarity=0.295 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 338 NAYNAVISNYISVGDFDECMKYYKG 362 (558)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~~~~~ 362 (558)
.++..+...|++.++.+.+.++.++
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~ 140 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRR 140 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3444445555555555555444443
No 424
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=41.37 E-value=1.2e+02 Score=23.56 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=10.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 008633 273 VISGWSKLGQVVEMERVLKEI 293 (558)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m 293 (558)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344444555555555555544
No 425
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=41.25 E-value=3.7e+02 Score=26.69 Aligned_cols=55 Identities=13% Similarity=0.118 Sum_probs=38.0
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--HhCCHHHHHHHHHHHHhC
Q 008633 172 ALGRRKFFDFMCNVLSDMAKEGVNPDLE--TLSIVMDSFI--RAGQVYKAIQMLGRLEDF 227 (558)
Q Consensus 172 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~--t~~~li~~~~--~~g~~~~A~~~~~~~~~~ 227 (558)
.+-+.++|..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344788999999999999887 555544 4444545543 446778888888877654
No 426
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=41.12 E-value=45 Score=23.25 Aligned_cols=51 Identities=16% Similarity=0.142 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRA 211 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~ 211 (558)
.|....++-+++..++..-.++++..+.++.+.|. .+..+|..-++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 45566777888888887788888888888888774 5677777777766654
No 427
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.56 E-value=1.1e+02 Score=23.45 Aligned_cols=32 Identities=25% Similarity=0.192 Sum_probs=15.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHH
Q 008633 482 YVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVY 515 (558)
Q Consensus 482 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 515 (558)
.|.-.|.+.|+-+.|.+-|+.=. .+-|...+|
T Consensus 77 hLGlLys~~G~~e~a~~eFetEK--alFPES~~f 108 (121)
T COG4259 77 HLGLLYSNSGKDEQAVREFETEK--ALFPESGVF 108 (121)
T ss_pred HHHHHHhhcCChHHHHHHHHHhh--hhCccchhH
Confidence 34444555666666655555322 234544444
No 428
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.32 E-value=2.2e+02 Score=24.80 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=14.2
Q ss_pred HHHHHhcCCHhHHHHHHHHHHh
Q 008633 484 IAGLCNIGQLENAVLVMEESLR 505 (558)
Q Consensus 484 i~~~~~~g~~~~A~~~~~~m~~ 505 (558)
+-.|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3446666777777777776664
No 429
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=39.75 E-value=4.3e+02 Score=27.01 Aligned_cols=105 Identities=12% Similarity=0.075 Sum_probs=60.4
Q ss_pred HhcCChhHHHHHHHHHH---HcCCCCCH-----HHHHHHHHHHHcCCChhHHHHHHHHHH-------HCCCCCC------
Q 008633 418 CSYGPPHAAMMMYKKAR---KVGCKLSL-----TAYKLLLRRLSGFGKCGMLLDLWHEMQ-------ESGYPSD------ 476 (558)
Q Consensus 418 ~~~g~~~~a~~~~~~~~---~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~~~~p~------ 476 (558)
...|++..|.+++...- ..|...+. ..||.|.....+.|.+..+..+|.... ..|++|.
T Consensus 251 Y~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls 330 (696)
T KOG2471|consen 251 YAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLS 330 (696)
T ss_pred HHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehh
Confidence 34566666666654321 12222221 122333333444555555555554443 2454443
Q ss_pred -----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008633 477 -----GEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLA 524 (558)
Q Consensus 477 -----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 524 (558)
..+||+ .-.|...|+.-.|.+-|.+.+.. +.-++..|..|.++|..
T Consensus 331 ~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 331 QNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred cccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 223443 34577889999999999988764 56778999999999864
No 430
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=39.72 E-value=3.4e+02 Score=25.88 Aligned_cols=59 Identities=10% Similarity=-0.022 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 304 TFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 304 t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
....++....+.|..+....+++..... .+......++.+++...+.+...++++....
T Consensus 171 lr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 171 LRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp HHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 3333444444444433333333333322 1334444455555555555555555555544
No 431
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=39.57 E-value=3.5e+02 Score=25.86 Aligned_cols=147 Identities=18% Similarity=0.155 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 008633 388 VADALEVFEEMLDRGI----VPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLD 463 (558)
Q Consensus 388 ~~~A~~~~~~m~~~~~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 463 (558)
.++|.+.|++....+. ..+...-..++....+.|..+.-..+++.... ..+......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 3456666666665321 22334444444445555554443333333332 2345556666666666666666666
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHhcCCH--hHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 464 LWHEMQESG-YPSDGEIYEYVIAGLCNIGQL--ENAVLVMEESL---RKGFCPSRLVYSKLSNKLLASNKLESAYNLFRK 537 (558)
Q Consensus 464 ~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~m~---~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 537 (558)
+++.....+ +++.. ...++.++...+.. +.+.+++.+=. ...+..+......++..+...-..++-.+-+++
T Consensus 223 ~l~~~l~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 300 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD--IRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELEE 300 (324)
T ss_dssp HHHHHHCTSTS-TTT--HHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHHH
T ss_pred HHHHHcCCcccccHH--HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHHH
Confidence 666666543 33222 23333334323322 45555444321 122333333444454444443333444444444
Q ss_pred HH
Q 008633 538 IK 539 (558)
Q Consensus 538 m~ 539 (558)
+.
T Consensus 301 f~ 302 (324)
T PF11838_consen 301 FF 302 (324)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 432
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=39.15 E-value=1.6e+02 Score=31.12 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHHCCCCCCH
Q 008633 456 GKCGMLLDLWHEMQESGYPSDG 477 (558)
Q Consensus 456 g~~~~A~~~~~~m~~~~~~p~~ 477 (558)
|++.+|.+.+-.+.+.+..|..
T Consensus 509 ~~~~~Aa~~Lv~Ll~~~~~Pk~ 530 (566)
T PF07575_consen 509 GDFREAASLLVSLLKSPIAPKS 530 (566)
T ss_dssp ----------------------
T ss_pred hhHHHHHHHHHHHHCCCCCcHH
Confidence 4555555555555554444443
No 433
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=39.00 E-value=3.5e+02 Score=25.76 Aligned_cols=70 Identities=11% Similarity=0.171 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHh----------cCCHHHHH
Q 008633 218 IQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSK----------LGQVVEME 287 (558)
Q Consensus 218 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~----------~g~~~~A~ 287 (558)
.++++.+...++.|.-+.+.=+.-.+.+.=.+.+++.+++.+.. |..-|..|+..||. .|++..-.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~nm 338 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS----DPQRFDFLLYICCSMLILVRERILEGDFTVNM 338 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 34566666666666666655555556666666666666666544 22224444444432 46666555
Q ss_pred HHHH
Q 008633 288 RVLK 291 (558)
Q Consensus 288 ~~~~ 291 (558)
+++.
T Consensus 339 kLLQ 342 (370)
T KOG4567|consen 339 KLLQ 342 (370)
T ss_pred HHHh
Confidence 5543
No 434
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=38.90 E-value=3.1e+02 Score=25.12 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=9.7
Q ss_pred HHHHhcCCHhHHHHHHHHH
Q 008633 485 AGLCNIGQLENAVLVMEES 503 (558)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~m 503 (558)
.++.....+++|+..+.++
T Consensus 86 ~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 86 QWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHhhccccHHHHHHHHH
Confidence 3444445555555555554
No 435
>PRK09857 putative transposase; Provisional
Probab=38.40 E-value=2.4e+02 Score=26.79 Aligned_cols=61 Identities=7% Similarity=0.060 Sum_probs=23.2
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008633 239 VLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFS 299 (558)
Q Consensus 239 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 299 (558)
++.-..+.++.++..++++.+.+..+......-++..-+.+.|.-+++.++..+|...|+.
T Consensus 212 ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 212 LFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3333334444444444444443322222222223333333334333444444444444433
No 436
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=38.29 E-value=2.1e+02 Score=23.07 Aligned_cols=43 Identities=16% Similarity=0.286 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 494 ENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFR 536 (558)
Q Consensus 494 ~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 536 (558)
++..++|..|.++|+--. +..|......+...|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 446777888888776544 4566677777788888888888875
No 437
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=38.18 E-value=1.7e+02 Score=21.96 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=18.4
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 483 VIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 483 li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
+.......|+.++|...+++.++.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444566779999999999988754
No 438
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.12 E-value=5.9e+02 Score=28.15 Aligned_cols=257 Identities=13% Similarity=0.128 Sum_probs=114.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008633 170 VKALGRRKFFDFMCNVLSDMAKEGVNPDLE--TLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRL 247 (558)
Q Consensus 170 i~~~~~~~~~~~a~~l~~~m~~~g~~~~~~--t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~ 247 (558)
=+.|...|+|+.|+++-+. .|+.. .+..-...|.+.+++..|-++|.++.+ .+..+.--+....
T Consensus 365 Wk~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~ 430 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEIN 430 (911)
T ss_pred HHHHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcC
Confidence 3457778888888765432 23322 333334566677888888888887743 2222222333334
Q ss_pred CHhHHHHHHHHhhcCCCCChhhHHH-----HHHHHH-hcCCH----HHHHHHHHH--------HHH-cCCCCCHHHHHHH
Q 008633 248 HVGAASSLFNSMKGKVLFNVMTYNI-----VISGWS-KLGQV----VEMERVLKE--------IVA-EGFSPDSLTFSFL 308 (558)
Q Consensus 248 ~~~~A~~~~~~m~~~~~~~~~~~~~-----li~~~~-~~g~~----~~A~~~~~~--------m~~-~g~~p~~~t~~~l 308 (558)
+.+.-..++.+=.++.+|.-.+-.. ++..|. +.++. +++..-++. +.. ....-+...+.+.
T Consensus 431 ~~~~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv 510 (911)
T KOG2034|consen 431 QERALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETV 510 (911)
T ss_pred CHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHH
Confidence 4332222222222222222222111 222221 11111 222221111 111 0011122223344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCH
Q 008633 309 IEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKV 388 (558)
Q Consensus 309 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 388 (558)
...+...|+.++...+-.-|. .|..++..+++.+.+++|++++..-. .|... --.--.+ ....+
T Consensus 511 ~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~~----~~el~--yk~ap~L-i~~~p 574 (911)
T KOG2034|consen 511 YQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQR----NPELF--YKYAPEL-ITHSP 574 (911)
T ss_pred HHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhcc----chhhH--HHhhhHH-HhcCc
Confidence 444555666666655444332 35677888888888888888877543 12111 0000000 11222
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChh
Q 008633 389 ADALEVFEEMLDRGIVPSTGTITSFLEPLCSY---GPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCG 459 (558)
Q Consensus 389 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 459 (558)
.+....+..+... -+......++..+.+. .....+...++-....-..-++..+|.++..|++..+-+
T Consensus 575 ~~tV~~wm~~~d~---~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ 645 (911)
T KOG2034|consen 575 KETVSAWMAQKDL---DPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDD 645 (911)
T ss_pred HHHHHHHHHcccc---CchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccc
Confidence 2223333222221 1222223333333333 233444555544444333456777888877776655433
No 439
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=38.04 E-value=4.2e+02 Score=27.52 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=13.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Q 008633 203 IVMDSFIRAGQVYKAIQMLGRLE 225 (558)
Q Consensus 203 ~li~~~~~~g~~~~A~~~~~~~~ 225 (558)
.++.-|.+.+++++|+.++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 34555666666666666665554
No 440
>PRK09857 putative transposase; Provisional
Probab=37.82 E-value=3.1e+02 Score=26.05 Aligned_cols=65 Identities=5% Similarity=-0.033 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCch
Q 008633 481 EYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQNDY 546 (558)
Q Consensus 481 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 546 (558)
..++......|+.++..++++...+. .........++..-+.+.|.-+++.++..+|...|...+
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 33444334445555555555544443 222233444555555555655666666666666555443
No 441
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=37.27 E-value=3.3e+02 Score=24.95 Aligned_cols=21 Identities=14% Similarity=-0.070 Sum_probs=8.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 008633 273 VISGWSKLGQVVEMERVLKEI 293 (558)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m 293 (558)
+..+......+++|+..+.+.
T Consensus 84 lg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 84 LGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHHHhhccccHHHHHHHHH
Confidence 333334444444444444433
No 442
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=36.57 E-value=5.9e+02 Score=27.68 Aligned_cols=87 Identities=10% Similarity=0.109 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---C----------CCCHHHHHHHHHHHH
Q 008633 143 GEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEG---V----------NPDLETLSIVMDSFI 209 (558)
Q Consensus 143 ~~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g---~----------~~~~~t~~~li~~~~ 209 (558)
.+....+........++..+......+++.. .|+...++.+++++...| + ..+......++.++
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL- 256 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGI- 256 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHH-
Confidence 3444445555556667777777777666654 588888888887765532 1 11222333444444
Q ss_pred HhCCHHHHHHHHHHHHhCCCCCC
Q 008633 210 RAGQVYKAIQMLGRLEDFGLKFD 232 (558)
Q Consensus 210 ~~g~~~~A~~~~~~~~~~g~~~~ 232 (558)
..++...++.+++++...|+.+.
T Consensus 257 ~~~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 257 INQDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred HcCCHHHHHHHHHHHHHhCCCHH
Confidence 34778888888888888776543
No 443
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.20 E-value=4.5e+02 Score=26.17 Aligned_cols=62 Identities=6% Similarity=-0.091 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 234 ESLNVVLWCLCQRLHVGAASSLFNSMKGKVL---FNVMTYNIVISGWSKLGQVVEMERVLKEIVA 295 (558)
Q Consensus 234 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (558)
..+.-+.+.|..+|+++.|++.|-+.+.-+. ..+..|-.+|..-.-.|+|.....+..+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3455566666666777766666666443211 1233444455555555666665555555443
No 444
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=35.65 E-value=2.1e+02 Score=28.52 Aligned_cols=100 Identities=18% Similarity=0.199 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---------------HHHHHHHHHHHhcCCHHHHHHHHH---
Q 008633 300 PDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDT---------------NAYNAVISNYISVGDFDECMKYYK--- 361 (558)
Q Consensus 300 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~---------------~~~~~li~~~~~~g~~~~A~~~~~--- 361 (558)
|+......+++.+...-+-.+..+.++...+.+.+.++ .+...|++.++-.||+..|+++++
T Consensus 70 ~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~id 149 (404)
T PF10255_consen 70 PDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENID 149 (404)
T ss_pred cCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccC
Q ss_pred ----HhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 362 ----GMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEML 399 (558)
Q Consensus 362 ----~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (558)
.+...-..-.+.+|--+.-+|...+++.+|.++|....
T Consensus 150 l~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 150 LNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred cccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 445
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=35.59 E-value=1.5e+02 Score=20.43 Aligned_cols=49 Identities=27% Similarity=0.240 Sum_probs=27.4
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----HhcCCHHHHHHHH
Q 008633 487 LCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKL-----LASNKLESAYNLF 535 (558)
Q Consensus 487 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~ 535 (558)
+.+.|++=+|.++++++-...-.+....+..||... .+.|+.+.|..++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 445677777777777766432223455555555543 3566666666543
No 446
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=35.49 E-value=3.1e+02 Score=24.12 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=11.0
Q ss_pred HhcCCHHHHHHHHHHHH
Q 008633 523 LASNKLESAYNLFRKIK 539 (558)
Q Consensus 523 ~~~g~~~~A~~~~~~m~ 539 (558)
.+.|++++|.++++-|.
T Consensus 132 l~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 132 LRKGSFEEAERFLKFME 148 (204)
T ss_pred HHhccHHHHHHHHHHHH
Confidence 35667777777666665
No 447
>PRK10941 hypothetical protein; Provisional
Probab=34.93 E-value=3.9e+02 Score=25.06 Aligned_cols=78 Identities=9% Similarity=-0.093 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHH
Q 008633 445 YKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKG-FCPSRLVYSKLSNKLL 523 (558)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~ 523 (558)
.+.+-.+|.+.++++.|+++.+.+.... +.+..-+.--.-.|.+.|.+..|..-++..++.- -.|+.......+..+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 3445566778888888888888887753 4445556656666788888888888888777652 2234444444444433
No 448
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=34.89 E-value=2.2e+02 Score=22.24 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008633 479 IYEYVIAGLCNIGQLENAVLVMEESLR 505 (558)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 505 (558)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477888888888888888888888776
No 449
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=34.84 E-value=3.9e+02 Score=25.07 Aligned_cols=83 Identities=14% Similarity=0.142 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 008633 282 QVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRA-------GRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYIS----V 350 (558)
Q Consensus 282 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~ 350 (558)
+..+|..+|++..+.|..+...+...+-..|..- -+...|...+.++...| +......+..+|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 5566666666666655433212222222222221 12235666666666665 33334444444432 2
Q ss_pred CCHHHHHHHHHHhhhCC
Q 008633 351 GDFDECMKYYKGMSSYN 367 (558)
Q Consensus 351 g~~~~A~~~~~~m~~~~ 367 (558)
.+.++|...|....+.|
T Consensus 205 ~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 205 RDLKKAFRWYKKAAEQG 221 (292)
T ss_pred cCHHHHHHHHHHHHHCC
Confidence 35667777777776655
No 450
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=34.66 E-value=3.6e+02 Score=24.63 Aligned_cols=166 Identities=11% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-
Q 008633 378 LISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSY-GPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGF- 455 (558)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 455 (558)
++...-+.|+++++...++++...+...+..--+.+-.+|-.. |....+++++..+....-.-.......++..|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki 86 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKI 86 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHH
Q ss_pred -CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-----------------hHHHHHHHHHHhC---CCCCC---
Q 008633 456 -GKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQL-----------------ENAVLVMEESLRK---GFCPS--- 511 (558)
Q Consensus 456 -g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-----------------~~A~~~~~~m~~~---g~~p~--- 511 (558)
..+..-..=.-.+.+..+-|....-...+-.+-..|++ +.|.+.|+++.+. .++|.
T Consensus 87 e~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~ 166 (236)
T PF00244_consen 87 EDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPL 166 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcH
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 008633 512 --RLVYSKLSNKLLASNKLESAYNLFRKIKIARQ 543 (558)
Q Consensus 512 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 543 (558)
....+.-+-.|-..|+.++|.++.++.-...+
T Consensus 167 rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 167 RLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
No 451
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=34.58 E-value=2.1e+02 Score=26.38 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 272 IVISGWSKLGQVVEMERVLKEIVA----EG-FSPDSLTFSFLIEGLGRAGRIDDAIEVFDTM 328 (558)
Q Consensus 272 ~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 328 (558)
.|...|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+--++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455556666666666666666532 22 2233445555666666666666655554433
No 452
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=34.22 E-value=4.9e+02 Score=26.00 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=10.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCC
Q 008633 316 GRIDDAIEVFDTMKEKGCGPD 336 (558)
Q Consensus 316 g~~~~a~~~~~~m~~~g~~p~ 336 (558)
.+.+.|+-++..|++.|..|-
T Consensus 263 SD~dAALyylARmi~~GeDp~ 283 (436)
T COG2256 263 SDPDAALYYLARMIEAGEDPL 283 (436)
T ss_pred CCcCHHHHHHHHHHhcCCCHH
Confidence 344445555555555544433
No 453
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=33.35 E-value=6.8e+02 Score=28.51 Aligned_cols=28 Identities=7% Similarity=0.361 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHHHC
Q 008633 304 TFSFLIEGLGRAG--RIDDAIEVFDTMKEK 331 (558)
Q Consensus 304 t~~~ll~~~~~~g--~~~~a~~~~~~m~~~ 331 (558)
-+..++.+|++.+ ++++|+.+..++.+.
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 3456677777776 777788877777765
No 454
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=33.33 E-value=1.6e+02 Score=20.23 Aligned_cols=14 Identities=36% Similarity=0.536 Sum_probs=5.5
Q ss_pred cCCHHHHHHHHHHH
Q 008633 315 AGRIDDAIEVFDTM 328 (558)
Q Consensus 315 ~g~~~~a~~~~~~m 328 (558)
.|++=+|.++++.+
T Consensus 12 ~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 12 AGDFFEAHEVLEEL 25 (62)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred CCCHHHhHHHHHHH
Confidence 34444444444443
No 455
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=33.04 E-value=4.3e+02 Score=24.97 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHH----hCCCCCCHH
Q 008633 197 DLETLSIVMDSFIRAGQVYKAIQMLGRLE----DFGLKFDAE 234 (558)
Q Consensus 197 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~----~~g~~~~~~ 234 (558)
-..++..+...|++.++.+.+.++..+.. ..|.+.|+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~ 155 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVF 155 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhH
Confidence 34566677777777777777776655543 345555543
No 456
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=32.63 E-value=1.8e+02 Score=22.80 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=14.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC
Q 008633 168 VIVKALGRRKFFDFMCNVLSDMAKEG 193 (558)
Q Consensus 168 ~li~~~~~~~~~~~a~~l~~~m~~~g 193 (558)
++|+.+.++...++|+++++.|.++|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 44555555555555555555555554
No 457
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=32.59 E-value=2.4e+02 Score=26.78 Aligned_cols=58 Identities=12% Similarity=0.281 Sum_probs=36.2
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008633 357 MKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCS 419 (558)
Q Consensus 357 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 419 (558)
.++++.|.+.++.|.-.++..+.-.+.+.=.+.+.+.+++.+.. |..-|..++..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHH
Confidence 45666666666777777666666666666666777777776654 22235556655554
No 458
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=32.34 E-value=4.7e+02 Score=25.23 Aligned_cols=79 Identities=9% Similarity=-0.093 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHh---cCCHHHHHHHHH
Q 008633 215 YKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSK---LGQVVEMERVLK 291 (558)
Q Consensus 215 ~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~ 291 (558)
+.-+.+++++.+.+ +-+......++..+.+..+.+...+.++++....+-+...|...+..... .-.++...++|.
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 44455666666553 23555566666666666666666666666665555566666665555443 223445555544
Q ss_pred HHH
Q 008633 292 EIV 294 (558)
Q Consensus 292 ~m~ 294 (558)
+..
T Consensus 127 ~~l 129 (321)
T PF08424_consen 127 KCL 129 (321)
T ss_pred HHH
Confidence 443
No 459
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=32.00 E-value=5.5e+02 Score=25.94 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 481 EYVIAGLCNIGQLENAVLVMEESLRKGFC--PSRLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 481 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
..|+.-|...|++.+|...++++ |.+ -...++.+++.+..+.|+-...++++++.-
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeL---gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf 570 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKEL---GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECF 570 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHh---CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34445555555555555555443 211 113455555555555555555555544443
No 460
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=31.98 E-value=6.3e+02 Score=28.76 Aligned_cols=30 Identities=13% Similarity=0.401 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhcC--CHHHHHHHHHHhhhC
Q 008633 337 TNAYNAVISNYISVG--DFDECMKYYKGMSSY 366 (558)
Q Consensus 337 ~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~ 366 (558)
..-...++.+|.+.+ ++++|+....++.+.
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 334566888888888 899999999988865
No 461
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.72 E-value=5.7e+02 Score=28.39 Aligned_cols=177 Identities=12% Similarity=0.089 Sum_probs=101.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 008633 175 RRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASS 254 (558)
Q Consensus 175 ~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~ 254 (558)
-++++++.+.+.+.-.--| .++|..+-+.|-.+-|+...+.=.. -......+|+++.|++
T Consensus 605 i~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~t------------RF~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 605 LNKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERT------------RFELALECGNLEVALE 664 (1202)
T ss_pred HhhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcch------------heeeehhcCCHHHHHH
Confidence 3456666655544332222 2345556666766666665543221 1233456788888887
Q ss_pred HHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 008633 255 LFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCG 334 (558)
Q Consensus 255 ~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 334 (558)
.-..+. +..+|..|+....+.|+.+-|+..|++.+. |..|--.|.-.|+.++-.++.+....+.
T Consensus 665 ~akkld-----d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r~-- 728 (1202)
T KOG0292|consen 665 AAKKLD-----DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIRN-- 728 (1202)
T ss_pred HHHhcC-----cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhhh--
Confidence 766554 667888888888888988888888877654 2233334455677777666665554431
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 335 PDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 335 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
|... ......-.|+.++-.++++..-.. +. .|.. -...|.-++|.++.++...
T Consensus 729 -D~~~---~~qnalYl~dv~ervkIl~n~g~~----~l-aylt----a~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 729 -DATG---QFQNALYLGDVKERVKILENGGQL----PL-AYLT----AAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred -hhHH---HHHHHHHhccHHHHHHHHHhcCcc----cH-HHHH----HhhcCcHHHHHHHHHhhcc
Confidence 2211 111112246777777777654321 11 1211 1235777788888777765
No 462
>PRK13342 recombination factor protein RarA; Reviewed
Probab=31.62 E-value=5.5e+02 Score=25.82 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=9.7
Q ss_pred CChhHHHHHHHHHHHcCCCC
Q 008633 421 GPPHAAMMMYKKARKVGCKL 440 (558)
Q Consensus 421 g~~~~a~~~~~~~~~~~~~~ 440 (558)
.+.+.|+.++.+|.+.|..|
T Consensus 244 sd~~aal~~l~~~l~~G~d~ 263 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDP 263 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 44455555555555544433
No 463
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.49 E-value=64 Score=30.91 Aligned_cols=89 Identities=12% Similarity=0.042 Sum_probs=45.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHH
Q 008633 420 YGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGE-IYEYVIAGLCNIGQLENAVL 498 (558)
Q Consensus 420 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~ 498 (558)
.|.++.|++.+...++.+ ++....|..-.+++.+.++...|++=++...+. .||.. -|-.-..+-...|++++|..
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHHH
Confidence 455555555555555543 334444444445556666666666655555543 23321 22222333344566666666
Q ss_pred HHHHHHhCCCCCC
Q 008633 499 VMEESLRKGFCPS 511 (558)
Q Consensus 499 ~~~~m~~~g~~p~ 511 (558)
.+....+.++.+.
T Consensus 204 dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 204 DLALACKLDYDEA 216 (377)
T ss_pred HHHHHHhccccHH
Confidence 6666666655444
No 464
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.37 E-value=2.3e+02 Score=24.29 Aligned_cols=60 Identities=17% Similarity=0.085 Sum_probs=34.3
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008633 189 MAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHV 249 (558)
Q Consensus 189 m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~ 249 (558)
+...|+..+..-. .++..+...++.-.|.++++.+.+.+...+..|.-.-|..+.+.|-+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3445665544332 44455555555666777777777766666655555555566655544
No 465
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=30.93 E-value=68 Score=32.20 Aligned_cols=98 Identities=13% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 008633 449 LRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVI-AGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASN 526 (558)
Q Consensus 449 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g 526 (558)
..-+.+.+.++.|..++.++++. .||...|...= .++.+.+++..|+.=+.++++. .|+ ...|..=..++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHH
Q ss_pred CHHHHHHHHHHHHHhcCCchhhhhhc
Q 008633 527 KLESAYNLFRKIKIARQNDYARRLWR 552 (558)
Q Consensus 527 ~~~~A~~~~~~m~~~~~~~~~~~~~~ 552 (558)
.+.+|...|+... .+.|+...+-+
T Consensus 87 ~~~~A~~~l~~~~--~l~Pnd~~~~r 110 (476)
T KOG0376|consen 87 EFKKALLDLEKVK--KLAPNDPDATR 110 (476)
T ss_pred HHHHHHHHHHHhh--hcCcCcHHHHH
No 466
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=30.86 E-value=3.3e+02 Score=23.34 Aligned_cols=61 Identities=15% Similarity=0.047 Sum_probs=34.4
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh
Q 008633 433 ARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLE 494 (558)
Q Consensus 433 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 494 (558)
+.+.|++.+..-. .++..+...++.-.|.++++.+.+.+...+..|...-+..+...|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 3445665554433 333444444555566777777776665556665555566666666543
No 467
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=30.41 E-value=1.3e+02 Score=23.55 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=22.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhC
Q 008633 169 IVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAG 212 (558)
Q Consensus 169 li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g 212 (558)
+++.+...+..-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 34444444444555566666655554445555444455555544
No 468
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=30.36 E-value=2.3e+02 Score=21.09 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=23.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 008633 219 QMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMK 260 (558)
Q Consensus 219 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~ 260 (558)
++|+-....|+..|..+|..+++.+.-.=..+...++++.|-
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555555555566666666655555555555555555555553
No 469
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=30.18 E-value=7.1e+02 Score=26.66 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=45.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHh------HHHHHHHHhhcCCCCChhhHHHHH
Q 008633 203 IVMDSFIRAGQVYKAIQMLGRLEDF--GLKFDAESLNVVLWCLCQRLHVG------AASSLFNSMKGKVLFNVMTYNIVI 274 (558)
Q Consensus 203 ~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~ll~~~~~~~~~~------~A~~~~~~m~~~~~~~~~~~~~li 274 (558)
.++.+|...|++..+.++++..... |-+.-...+|..|+...+.|.++ .|.+++++.. ..-|..||..|+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~--ln~d~~t~all~ 110 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR--LNGDSLTYALLC 110 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh--cCCcchHHHHHH
Confidence 6778888888888888888777643 33333456777777777777643 2333333332 223566666666
Q ss_pred HHHHh
Q 008633 275 SGWSK 279 (558)
Q Consensus 275 ~~~~~ 279 (558)
.+-..
T Consensus 111 ~~sln 115 (1117)
T COG5108 111 QASLN 115 (1117)
T ss_pred HhhcC
Confidence 55443
No 470
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=30.07 E-value=2.9e+02 Score=26.80 Aligned_cols=42 Identities=12% Similarity=0.164 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008633 166 YNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDS 207 (558)
Q Consensus 166 ~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~ 207 (558)
|-.+++.....|.++.++.+|++....|..|-...-..++..
T Consensus 143 WIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~di 184 (353)
T PF15297_consen 143 WICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDI 184 (353)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 444555555555555555555555555555544444444444
No 471
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=29.87 E-value=3e+02 Score=22.26 Aligned_cols=54 Identities=9% Similarity=0.175 Sum_probs=33.1
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 008633 172 ALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLE 225 (558)
Q Consensus 172 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~ 225 (558)
.+.+.+...-.-.+++.+.+.++.-....+.-+=.-|.+..+..+|.++|+-++
T Consensus 72 ~~~q~R~VRlvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 72 KYMQNRLVRLVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred cccccchhhhHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 334444555555666777777765444455555555666777777777776654
No 472
>PRK09462 fur ferric uptake regulator; Provisional
Probab=29.87 E-value=3.2e+02 Score=22.63 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=28.8
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcC-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008633 433 ARKVGCKLSLTAYKLLLRRLSGF-GKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQL 493 (558)
Q Consensus 433 ~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 493 (558)
+.+.|.+++..-. .++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 8 l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3444555443322 222333332 34455666666666555444555544455555555543
No 473
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.79 E-value=4.4e+02 Score=24.12 Aligned_cols=254 Identities=10% Similarity=0.008 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH------HhhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 008633 216 KAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFN------SMKGKVLFNVMTYNIVISGWSKLGQVVEMERV 289 (558)
Q Consensus 216 ~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~------~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 289 (558)
++.++..+..+.+....... .+.-.+.+++|-++|. +|......--..|--....+.+.|.-++|-..
T Consensus 3 ~a~~l~k~AEkK~~~s~gF~------lfgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~ 76 (288)
T KOG1586|consen 3 DAVQLMKKAEKKLNGSGGFL------LFGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATT 76 (288)
T ss_pred cHHHHHHHHHHhcccCCccc------ccCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHH
Q ss_pred HHHHHHc----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 290 LKEIVAE----GFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 290 ~~~m~~~----g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
|-++-+. ...--+.....-|..|...|++..|-+..-++-+. .+.+..-+..-|..|-..+++=...+.-....+
T Consensus 77 YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEi-yEsdl~d~ekaI~~YE~Aae~yk~ees~ssANK 155 (288)
T KOG1586|consen 77 YVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEI-YESDLQDFEKAIAHYEQAAEYYKGEESVSSANK 155 (288)
T ss_pred HHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHH-HhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHH
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 008633 366 YNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPST------GTITSFLEPLCSYGPPHAAMMMYKKARKVGCK 439 (558)
Q Consensus 366 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 439 (558)
.+--...--...+++.+|+++|++.....+..+. ..+-...-++.-..+.-.+...+++-.+....
T Consensus 156 --------C~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 156 --------CLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008633 440 LSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVI 484 (558)
Q Consensus 440 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 484 (558)
....-=..++.-+...-+-+....+-+...+.+--.....|.+-|
T Consensus 228 F~dsREckflk~L~~aieE~d~e~fte~vkefDsisrLD~W~tti 272 (288)
T KOG1586|consen 228 FTDSRECKFLKDLLDAIEEQDIEKFTEVVKEFDSISRLDQWKTTI 272 (288)
T ss_pred ccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhccchHHHHHHHH
No 474
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=29.47 E-value=4.9e+02 Score=24.63 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHH
Q 008633 439 KLSLTAYKLLLRRLSGFGKCGMLLD 463 (558)
Q Consensus 439 ~~~~~~~~~li~~~~~~g~~~~A~~ 463 (558)
..|+..|..+..+|...|+.+.+.+
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHHH
Confidence 4567777788888777777665543
No 475
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=29.37 E-value=5.7e+02 Score=25.34 Aligned_cols=52 Identities=10% Similarity=0.013 Sum_probs=31.0
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHH--HhCCHHHHHHHHHH
Q 008633 172 ALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIV----MDSFI--RAGQVYKAIQMLGR 223 (558)
Q Consensus 172 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~l----i~~~~--~~g~~~~A~~~~~~ 223 (558)
.+.+.+++..|.++|+++..+...+....+-.. ..+|. ..-++++|.+.++.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 445677888888888888877555444433222 23322 23466677777764
No 476
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=29.26 E-value=1.5e+02 Score=23.17 Aligned_cols=47 Identities=11% Similarity=0.051 Sum_probs=26.7
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh
Q 008633 448 LLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLE 494 (558)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 494 (558)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 34444444555566666666666555555555555555666665443
No 477
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.19 E-value=39 Score=32.29 Aligned_cols=96 Identities=10% Similarity=0.019 Sum_probs=72.7
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 008633 453 SGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESA 531 (558)
Q Consensus 453 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A 531 (558)
...|.+++|++.+...++.. ++....|.--.+++.+.++...|++-++..++. .|| ..-|..-..+-.-.|+|++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHH
Confidence 45688999999999988875 566777877888899999999999999988854 466 23344444455568999999
Q ss_pred HHHHHHHHHhcCCchhhhhh
Q 008633 532 YNLFRKIKIARQNDYARRLW 551 (558)
Q Consensus 532 ~~~~~~m~~~~~~~~~~~~~ 551 (558)
...+....+.+..+......
T Consensus 202 a~dl~~a~kld~dE~~~a~l 221 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSATL 221 (377)
T ss_pred HHHHHHHHhccccHHHHHHH
Confidence 99998888777766554443
No 478
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.75 E-value=2.3e+02 Score=20.66 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=12.8
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhCC
Q 008633 205 MDSFIRAGQVYKAIQMLGRLEDFG 228 (558)
Q Consensus 205 i~~~~~~g~~~~A~~~~~~~~~~g 228 (558)
++.+.++.-.++|+++++.+.+.|
T Consensus 38 ~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 38 IDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 344444555555555555555554
No 479
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=28.70 E-value=4.1e+02 Score=23.41 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=10.5
Q ss_pred HHHHhCCHHHHHHHHHHHH
Q 008633 207 SFIRAGQVYKAIQMLGRLE 225 (558)
Q Consensus 207 ~~~~~g~~~~A~~~~~~~~ 225 (558)
.....|++++|.+-++++.
T Consensus 38 ~~~H~~~~eeA~~~l~~a~ 56 (204)
T COG2178 38 FLLHRGDFEEAEKKLKKAS 56 (204)
T ss_pred HHHHhccHHHHHHHHHHHH
Confidence 3445566666665555543
No 480
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=28.58 E-value=2.4e+02 Score=24.96 Aligned_cols=55 Identities=11% Similarity=0.213 Sum_probs=28.8
Q ss_pred HHHHcCCCchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHH
Q 008633 134 KVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRK-FFDFMCNVLSD 188 (558)
Q Consensus 134 ~~l~~~~~~~~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~l~~~ 188 (558)
.+++--+...+.|-...-++..++.+.+|..|...+=+.....+ ++++..++|++
T Consensus 116 ~LL~iKGIG~ETaDsILlYa~~rp~FVvD~Yt~R~l~rlg~i~~k~ydeik~~fe~ 171 (215)
T COG2231 116 ELLSIKGIGKETADSILLYALDRPVFVVDKYTRRLLSRLGGIEEKKYDEIKELFEE 171 (215)
T ss_pred HHHccCCcchhhHHHHHHHHhcCcccchhHHHHHHHHHhcccccccHHHHHHHHHh
Confidence 34444444445555555556666666666666555544444443 35555555543
No 481
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=28.37 E-value=3.2e+02 Score=22.03 Aligned_cols=44 Identities=14% Similarity=0.111 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 008633 460 MLLDLWHEMQESGYPSD-GEIYEYVIAGLCNIGQLENAVLVMEES 503 (558)
Q Consensus 460 ~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 503 (558)
.+.++|+.|...|+--. ...|......+...|++++|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 78888888887665444 446777777888888888888888754
No 482
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=28.36 E-value=8.9e+02 Score=27.25 Aligned_cols=81 Identities=15% Similarity=0.039 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 008633 388 VADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARK-VGCKLSLTAYKLLLRRLSGFGKCGMLLDLWH 466 (558)
Q Consensus 388 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 466 (558)
.+.-.+.|.++.+.--..|..++..-...+...|++..|.+++.++.+ .+-.++...|..++..+...|-- ....+++
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~~~ 1290 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATFVK 1290 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHHHh
Confidence 344455555555432233444444444555667888888887777765 45566777777766666666543 3344444
Q ss_pred HHH
Q 008633 467 EMQ 469 (558)
Q Consensus 467 ~m~ 469 (558)
.+.
T Consensus 1291 ~~~ 1293 (1304)
T KOG1114|consen 1291 NWM 1293 (1304)
T ss_pred hhe
Confidence 443
No 483
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=28.31 E-value=5.6e+02 Score=24.85 Aligned_cols=62 Identities=10% Similarity=0.068 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHHh
Q 008633 165 SYNVIVKALGRRKFFDFMCNVLSDMAKE---GVNPDLETLS--IVMDSFIRAGQVYKAIQMLGRLED 226 (558)
Q Consensus 165 ~~~~li~~~~~~~~~~~a~~l~~~m~~~---g~~~~~~t~~--~li~~~~~~g~~~~A~~~~~~~~~ 226 (558)
....++.+.-+.++.++|++.++++.+. --.|+...|. .+.+.+...|+.+++.+.+.+..+
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3444455555556777777777777543 1234544443 334455566677777666666655
No 484
>PRK09462 fur ferric uptake regulator; Provisional
Probab=27.79 E-value=2.5e+02 Score=23.32 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=33.5
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008633 188 DMAKEGVNPDLETLSIVMDSFIRA-GQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHV 249 (558)
Q Consensus 188 ~m~~~g~~~~~~t~~~li~~~~~~-g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~ 249 (558)
.+.+.|++.+..- ..++..+... +..-.|.++++.+.+.+...+..|.-.-|+.+...|-+
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3445565544332 3344444443 35667777777777766555655555555555555543
No 485
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=27.79 E-value=3.5e+02 Score=22.32 Aligned_cols=68 Identities=7% Similarity=0.144 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 008633 299 SPDSLTFSFLIEGLGRAG---RIDDAIEVFDTMKEKGC-GPDTNAYNAVISNYISVGDFDECMKYYKGMSSY 366 (558)
Q Consensus 299 ~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 366 (558)
.++..+-..+..++.+.. +..+...+++++.+... .-.....--|.-++.+.++++.++++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 344455555555665554 34456667777765221 112223334556677777777777777777654
No 486
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=27.78 E-value=7e+02 Score=25.96 Aligned_cols=85 Identities=14% Similarity=0.203 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC----------------CCCHHHHHHHHHH
Q 008633 144 EAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGV----------------NPDLETLSIVMDS 207 (558)
Q Consensus 144 ~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~----------------~~~~~t~~~li~~ 207 (558)
+....+.....+..++..+......++.. ..|+...|+.+++++...+- ..+......++.+
T Consensus 190 ~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~a 267 (507)
T PRK06645 190 EEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEY 267 (507)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHH
Confidence 33444444444555666666666665553 35777778777777643211 1122222223333
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCC
Q 008633 208 FIRAGQVYKAIQMLGRLEDFGLKF 231 (558)
Q Consensus 208 ~~~~g~~~~A~~~~~~~~~~g~~~ 231 (558)
. ..|+..+|+.+++++...|..|
T Consensus 268 i-~~~d~~~Al~~l~~L~~~g~~~ 290 (507)
T PRK06645 268 I-IHRETEKAINLINKLYGSSVNL 290 (507)
T ss_pred H-HcCCHHHHHHHHHHHHHcCCCH
Confidence 3 3366666666666666665543
No 487
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=27.66 E-value=7.2e+02 Score=25.90 Aligned_cols=32 Identities=0% Similarity=-0.064 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 008633 270 YNIVISGWSKLGQVVEMERVLKEIVAEGFSPDS 302 (558)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 302 (558)
.-.|+.+.. .|+.++|+.+++++...|..|..
T Consensus 261 if~L~~ai~-~~d~~~Al~~l~~L~~~g~~~~~ 292 (507)
T PRK06645 261 IIEFVEYII-HRETEKAINLINKLYGSSVNLEI 292 (507)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHH
Confidence 334444443 48899999999999998876553
No 488
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=27.66 E-value=2.6e+02 Score=20.82 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=17.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 008633 428 MMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEM 468 (558)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 468 (558)
++|+.....|+..|...|..+++.+...=-.+...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34444444444444444444444433333334444444444
No 489
>PRK10941 hypothetical protein; Provisional
Probab=27.37 E-value=5.2e+02 Score=24.20 Aligned_cols=59 Identities=8% Similarity=-0.151 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 237 NVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVA 295 (558)
Q Consensus 237 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (558)
+.+-.+|.+.++++.|+.+.+.+..-.|.+..-+.--.-.|.+.|.+..|..-++...+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 34444555556666666666555554444454455555555566666666555555544
No 490
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.17 E-value=3.1e+02 Score=25.17 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 482 YVIAGLCNIGQLENAVLVMEESLRK----GF-CPSRLVYSKLSNKLLASNKLESAYNLFRKI 538 (558)
Q Consensus 482 ~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 538 (558)
.+..-|.+.|++++|.++|+.+... |. .+...+...+..++.+.|+.+....+-=++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4455567777777777777776421 21 223455666667777777777766654443
No 491
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.10 E-value=7.3e+02 Score=25.85 Aligned_cols=86 Identities=14% Similarity=0.152 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-------------CCCHHHHHHHHHHHHH
Q 008633 144 EAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGV-------------NPDLETLSIVMDSFIR 210 (558)
Q Consensus 144 ~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~-------------~~~~~t~~~li~~~~~ 210 (558)
+....+..+..+..++..+......++... .|+...|+.++++....|- .++......++.++ .
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al-~ 257 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEAL-A 257 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHH-H
Confidence 333344444445556666666666665543 5788888888877654431 12222333334433 3
Q ss_pred hCCHHHHHHHHHHHHhCCCCCC
Q 008633 211 AGQVYKAIQMLGRLEDFGLKFD 232 (558)
Q Consensus 211 ~g~~~~A~~~~~~~~~~g~~~~ 232 (558)
.|+.+.++++++++...|..+.
T Consensus 258 ~~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 258 AKAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred cCCHHHHHHHHHHHHHcCCCHH
Confidence 4777777777777777776544
No 492
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=26.85 E-value=9.7e+02 Score=27.17 Aligned_cols=245 Identities=11% Similarity=0.023 Sum_probs=121.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008633 266 NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVIS 345 (558)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 345 (558)
+...-...+..+.+.+.. ++...+....+. ++...-...+.++.+.+........+..+... +|..+-...+.
T Consensus 634 d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~~ 706 (897)
T PRK13800 634 DPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAALD 706 (897)
T ss_pred CHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHHH
Confidence 666666666666666653 344444444432 34444444444544433221122233333332 35555555555
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 008633 346 NYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHA 425 (558)
Q Consensus 346 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 425 (558)
++...+.-+ ...+...+. .+|...-...+.++.+.+..+. +..... .++...-.....++...+..+.
T Consensus 707 aL~~~~~~~-~~~l~~~L~----D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~~ 774 (897)
T PRK13800 707 VLRALRAGD-AALFAAALG----DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGGA 774 (897)
T ss_pred HHHhhccCC-HHHHHHHhc----CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccccc
Confidence 555443211 122223222 4555555666666666554332 122222 3444444455556665554332
Q ss_pred -HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008633 426 -AMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESL 504 (558)
Q Consensus 426 -a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (558)
+...+..+.+ .++...-...+.++...|....+...+..+.+ .++..+-...+.++...+. +++...+-.+.
T Consensus 775 ~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L 847 (897)
T PRK13800 775 PAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEAL 847 (897)
T ss_pred hhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHHh
Confidence 2333444433 24566666777777777766555444444443 2354555556666666664 44556665565
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 505 RKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 505 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
+ .|+..+-...+.++.+.+....+...+....
T Consensus 848 ~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 848 T---DPHLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred c---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3 3666666677777766533345555555444
No 493
>PHA03100 ankyrin repeat protein; Provisional
Probab=26.79 E-value=6.2e+02 Score=25.85 Aligned_cols=217 Identities=13% Similarity=0.111 Sum_probs=103.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHH-----HHHhCCHHHHHHHHHHHHhCCCCCCHHH--HHHH
Q 008633 169 IVKALGRRKFFDFMCNVLSDMAKEGVNPDLET--LSIVMDS-----FIRAGQVYKAIQMLGRLEDFGLKFDAES--LNVV 239 (558)
Q Consensus 169 li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t--~~~li~~-----~~~~g~~~~A~~~~~~~~~~g~~~~~~~--~~~l 239 (558)
.+...++.|+.+ +++.+.+.|..++... ....+.. .+..|..+ +.+.+.+.|..++... -.+.
T Consensus 38 ~L~~A~~~~~~~----ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~----iv~~Ll~~ga~i~~~d~~g~tp 109 (480)
T PHA03100 38 PLYLAKEARNID----VVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKE----IVKLLLEYGANVNAPDNNGITP 109 (480)
T ss_pred hhhhhhccCCHH----HHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHH----HHHHHHHCCCCCCCCCCCCCch
Confidence 344455666655 4555556777665432 2233444 44444443 3444455665543321 1233
Q ss_pred HHHHH--hcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhc
Q 008633 240 LWCLC--QRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTF--SFLIEGLGRA 315 (558)
Q Consensus 240 l~~~~--~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~ 315 (558)
+...+ ..|+.+-+..+++.-..-...+...+ +.+...+..|. .-.++++.+.+.|..++.... .+.+...+..
T Consensus 110 L~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~ 186 (480)
T PHA03100 110 LLYAISKKSNSYSIVEYLLDNGANVNIKNSDGE-NLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEK 186 (480)
T ss_pred hhHHHhcccChHHHHHHHHHcCCCCCccCCCCC-cHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHh
Confidence 44444 67777766666653222111222223 34444555552 123445556667766654322 2345556666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHh
Q 008633 316 GRIDDAIEVFDTMKEKGCGPDTNA--------YNAVISNYISVGDFDECMKYYKGMSSYNCEPNM---DTYTRLISGLLK 384 (558)
Q Consensus 316 g~~~~a~~~~~~m~~~g~~p~~~~--------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~ 384 (558)
|+.+ +.+.+.+.|..++... +.+.+...+..|+ ...++.+.+.+.|..++. .-.+.|. ..+.
T Consensus 187 ~~~~----iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~TpL~-~A~~ 259 (480)
T PHA03100 187 GNID----VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTPLH-YAVY 259 (480)
T ss_pred CCHH----HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCHHH-HHHH
Confidence 6554 4445556666554321 1334444555555 112333444455544332 2233333 3345
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH
Q 008633 385 SRKVADALEVFEEMLDRGIVPST 407 (558)
Q Consensus 385 ~g~~~~A~~~~~~m~~~~~~p~~ 407 (558)
.|+.+ +++.+.+.|..++.
T Consensus 260 ~~~~~----iv~~Ll~~gad~n~ 278 (480)
T PHA03100 260 NNNPE----FVKYLLDLGANPNL 278 (480)
T ss_pred cCCHH----HHHHHHHcCCCCCc
Confidence 55544 44555566655543
No 494
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=26.68 E-value=3e+02 Score=21.27 Aligned_cols=21 Identities=24% Similarity=0.525 Sum_probs=10.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHH
Q 008633 204 VMDSFIRAGQVYKAIQMLGRL 224 (558)
Q Consensus 204 li~~~~~~g~~~~A~~~~~~~ 224 (558)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 444445555555555555543
No 495
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=26.46 E-value=6.7e+02 Score=25.20 Aligned_cols=88 Identities=8% Similarity=-0.006 Sum_probs=51.3
Q ss_pred HcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH---H-----HHhcCCHhHHHHHHHHHHhC
Q 008633 435 KVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIA---G-----LCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 435 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~---~-----~~~~g~~~~A~~~~~~m~~~ 506 (558)
...+.||..+.|.+...++..-..+....+|+--.+.+ .|=...+-++|- + -.+...-++++++++.|-..
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~ 254 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQ 254 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchh
Confidence 34577888888888777777777777777787777654 343333333321 1 11234567788888777544
Q ss_pred CCCCCHHHHHHHHHHHH
Q 008633 507 GFCPSRLVYSKLSNKLL 523 (558)
Q Consensus 507 g~~p~~~~~~~l~~~~~ 523 (558)
--.-|..-+..|...|+
T Consensus 255 L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 255 LSVEDVPDFFSLAQYYS 271 (669)
T ss_pred cccccchhHHHHHHHHh
Confidence 21233444555555443
No 496
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=26.33 E-value=2.7e+02 Score=21.89 Aligned_cols=39 Identities=23% Similarity=0.106 Sum_probs=26.9
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008633 483 VIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKL 522 (558)
Q Consensus 483 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 522 (558)
+|+.+.++...++|+++++-|.++| ..+...-+.|-..+
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L 105 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSIL 105 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4666778888899999999888887 45554444443333
No 497
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=26.22 E-value=2.5e+02 Score=20.11 Aligned_cols=32 Identities=9% Similarity=0.106 Sum_probs=16.8
Q ss_pred CHhHHHHHHHHhhcCCCCChhhHHHHHHHHHh
Q 008633 248 HVGAASSLFNSMKGKVLFNVMTYNIVISGWSK 279 (558)
Q Consensus 248 ~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~ 279 (558)
+.+.|..++..++.....++..||++...+.+
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~R 43 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDR 43 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHH
Confidence 34455555555554444455566665555443
No 498
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=26.21 E-value=1.3e+02 Score=23.81 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=21.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhC
Q 008633 168 VIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAG 212 (558)
Q Consensus 168 ~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g 212 (558)
.+++.+...+..-.|.++++.|.+.|...+..|.-..++.+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 444445454445555555555555554445444444444444443
No 499
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=26.10 E-value=2e+02 Score=19.03 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=18.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH
Q 008633 482 YVIAGLCNIGQLENAVLVMEESLRKGFCPSRL 513 (558)
Q Consensus 482 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 513 (558)
.+.-++.+.|++++|.+..+.+++. .|+-.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~ 35 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEI--EPDNR 35 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH--TTS-H
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh--CCCcH
Confidence 3445667777777777777777754 46643
No 500
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=25.97 E-value=7.7e+02 Score=25.70 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=15.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhh
Q 008633 342 AVISNYISVGDFDECMKYYKGMS 364 (558)
Q Consensus 342 ~li~~~~~~g~~~~A~~~~~~m~ 364 (558)
.++.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 45566667777777777766664
Done!