Query 008633
Match_columns 558
No_of_seqs 829 out of 2875
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 08:07:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008633.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008633hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 9.4E-35 3.2E-39 307.0 39.5 395 144-551 134-587 (597)
2 2xpi_A Anaphase-promoting comp 100.0 7.2E-34 2.4E-38 300.3 41.3 394 144-551 101-553 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.6E-32 5.4E-37 279.2 19.0 212 287-524 10-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 5.6E-31 1.9E-35 267.8 25.8 186 269-454 28-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2.3E-27 8E-32 236.4 43.2 374 170-554 6-379 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 2.2E-25 7.5E-30 222.1 48.8 358 160-527 30-388 (388)
7 2gw1_A Mitochondrial precursor 99.9 2.2E-23 7.6E-28 215.4 37.4 278 267-552 186-487 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 2.4E-22 8.2E-27 204.2 40.6 334 160-502 23-405 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 9.8E-22 3.3E-26 199.6 39.0 334 195-538 23-406 (450)
10 2gw1_A Mitochondrial precursor 99.9 1.2E-20 4.1E-25 194.9 38.3 357 144-512 23-482 (514)
11 3fp2_A TPR repeat-containing p 99.9 5.6E-20 1.9E-24 191.1 40.9 369 161-543 57-493 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 1.4E-18 4.7E-23 170.3 40.8 328 163-522 3-350 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 1.7E-18 5.8E-23 169.6 40.1 314 143-487 19-350 (359)
14 3fp2_A TPR repeat-containing p 99.9 6.2E-18 2.1E-22 175.6 40.4 351 144-507 76-492 (537)
15 2xm6_A Protein corresponding t 99.8 5.7E-16 1.9E-20 158.9 52.3 355 161-544 37-435 (490)
16 3hym_B Cell division cycle pro 99.8 2E-18 6.9E-23 167.1 31.6 292 232-529 21-322 (330)
17 3hym_B Cell division cycle pro 99.8 4.4E-18 1.5E-22 164.7 30.9 292 196-493 20-321 (330)
18 1fch_A Peroxisomal targeting s 99.8 6.1E-18 2.1E-22 166.6 27.5 288 246-538 38-356 (368)
19 1fch_A Peroxisomal targeting s 99.8 3.8E-18 1.3E-22 168.1 24.8 289 211-504 38-357 (368)
20 4eqf_A PEX5-related protein; a 99.8 2.9E-18 1E-22 168.9 22.8 266 266-537 64-352 (365)
21 2xm6_A Protein corresponding t 99.8 2.3E-14 8E-19 146.9 48.9 365 142-538 58-464 (490)
22 3spa_A Mtrpol, DNA-directed RN 99.8 4.1E-19 1.4E-23 185.5 11.8 120 266-385 126-249 (1134)
23 4eqf_A PEX5-related protein; a 99.8 9.6E-18 3.3E-22 165.2 20.3 265 234-502 66-352 (365)
24 2ooe_A Cleavage stimulation fa 99.8 7.9E-15 2.7E-19 152.0 43.1 388 144-541 29-492 (530)
25 1b89_A Protein (clathrin heavy 99.8 3.4E-18 1.2E-22 165.9 15.5 287 132-463 9-303 (449)
26 3spa_A Mtrpol, DNA-directed RN 99.8 7.2E-19 2.5E-23 183.7 10.7 153 229-386 123-286 (1134)
27 3cv0_A Peroxisome targeting si 99.8 1.9E-16 6.4E-21 152.9 26.9 265 268-538 22-312 (327)
28 3cv0_A Peroxisome targeting si 99.7 6.6E-16 2.2E-20 149.1 27.7 234 162-400 20-268 (327)
29 4g1t_A Interferon-induced prot 99.7 5.7E-15 1.9E-19 150.7 35.3 375 160-550 48-468 (472)
30 1b89_A Protein (clathrin heavy 99.7 1.8E-17 6.2E-22 160.8 14.6 287 175-506 15-308 (449)
31 3mkr_A Coatomer subunit epsilo 99.7 2.3E-15 7.8E-20 142.7 28.9 270 245-533 11-286 (291)
32 3mkr_A Coatomer subunit epsilo 99.7 1.6E-15 5.3E-20 143.9 27.2 252 207-471 8-264 (291)
33 2ooe_A Cleavage stimulation fa 99.7 4.3E-13 1.5E-17 138.9 40.3 384 160-551 10-466 (530)
34 1xi4_A Clathrin heavy chain; a 99.7 1.6E-12 5.4E-17 140.6 43.1 320 163-538 985-1306(1630)
35 1xi4_A Clathrin heavy chain; a 99.7 2.6E-12 8.9E-17 139.0 43.3 263 198-497 1105-1375(1630)
36 3uq3_A Heat shock protein STI1 99.6 3.8E-14 1.3E-18 131.5 24.6 223 305-541 8-236 (258)
37 4g1t_A Interferon-induced prot 99.6 3.7E-13 1.3E-17 137.2 32.5 332 160-507 91-460 (472)
38 3uq3_A Heat shock protein STI1 99.6 9.5E-14 3.2E-18 128.9 25.7 226 267-506 5-236 (258)
39 2pl2_A Hypothetical conserved 99.6 9.1E-14 3.1E-18 125.7 21.7 209 161-398 3-211 (217)
40 2pl2_A Hypothetical conserved 99.6 9.3E-14 3.2E-18 125.6 21.6 200 231-435 3-213 (217)
41 3u4t_A TPR repeat-containing p 99.6 5.2E-13 1.8E-17 125.1 26.7 198 235-435 5-207 (272)
42 1ouv_A Conserved hypothetical 99.6 4.9E-12 1.7E-16 118.7 32.9 224 266-507 5-252 (273)
43 1ouv_A Conserved hypothetical 99.6 5.6E-12 1.9E-16 118.3 32.9 225 301-543 5-253 (273)
44 2h6f_A Protein farnesyltransfe 99.6 4.2E-13 1.4E-17 131.6 25.2 218 266-490 96-322 (382)
45 2ho1_A Type 4 fimbrial biogene 99.6 7.1E-13 2.4E-17 122.7 25.6 199 163-365 37-237 (252)
46 3u4t_A TPR repeat-containing p 99.6 3.1E-13 1.1E-17 126.7 22.8 198 268-469 4-206 (272)
47 2ho1_A Type 4 fimbrial biogene 99.6 1.8E-12 6.1E-17 119.9 27.3 209 198-411 37-246 (252)
48 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.5E-13 8.4E-18 127.5 21.4 246 280-535 18-269 (275)
49 3e4b_A ALGK; tetratricopeptide 99.6 2.5E-13 8.5E-18 137.3 22.4 368 144-541 20-421 (452)
50 2vq2_A PILW, putative fimbrial 99.6 1.9E-12 6.5E-17 117.2 26.3 163 235-399 44-209 (225)
51 2vq2_A PILW, putative fimbrial 99.6 2E-12 7E-17 117.0 25.5 211 161-376 6-219 (225)
52 2q7f_A YRRB protein; TPR, prot 99.5 4.7E-13 1.6E-17 123.0 20.6 203 160-366 20-222 (243)
53 2q7f_A YRRB protein; TPR, prot 99.5 7.9E-13 2.7E-17 121.5 22.2 157 240-399 30-186 (243)
54 2h6f_A Protein farnesyltransfe 99.5 1.5E-12 5.1E-17 127.7 25.2 198 197-398 96-302 (382)
55 1xnf_A Lipoprotein NLPI; TPR, 99.5 1E-13 3.6E-18 130.0 16.2 244 247-500 19-269 (275)
56 3e4b_A ALGK; tetratricopeptide 99.5 3E-12 1E-16 129.4 24.1 344 168-543 8-389 (452)
57 3sf4_A G-protein-signaling mod 99.5 1.2E-12 3.9E-17 130.4 20.2 301 196-528 7-363 (406)
58 4a1s_A PINS, partner of inscut 99.5 1.2E-12 4E-17 130.8 19.5 133 409-541 225-372 (411)
59 4a1s_A PINS, partner of inscut 99.5 2.1E-12 7.2E-17 129.0 20.4 236 163-399 48-330 (411)
60 3sf4_A G-protein-signaling mod 99.5 1.1E-12 3.9E-17 130.4 18.0 240 160-400 6-295 (406)
61 4e6h_A MRNA 3'-END-processing 99.5 1.6E-09 5.5E-14 113.3 40.9 222 321-545 328-574 (679)
62 3ro2_A PINS homolog, G-protein 99.4 2.4E-12 8.3E-17 124.1 17.4 198 165-363 7-249 (338)
63 3ro2_A PINS homolog, G-protein 99.4 4.4E-12 1.5E-16 122.3 18.6 275 200-506 7-332 (338)
64 2ond_A Cleavage stimulation fa 99.4 2E-10 6.7E-15 109.8 29.8 219 180-401 33-270 (308)
65 3ulq_A Response regulator aspa 99.4 1.5E-11 5.1E-16 121.6 22.2 235 273-541 109-368 (383)
66 2ond_A Cleavage stimulation fa 99.4 3.6E-10 1.2E-14 107.9 29.9 236 266-506 7-270 (308)
67 3vtx_A MAMA; tetratricopeptide 99.4 7.8E-11 2.7E-15 103.1 22.7 165 233-400 5-169 (184)
68 4abn_A Tetratricopeptide repea 99.4 1E-11 3.6E-16 126.2 19.4 196 336-537 101-317 (474)
69 3ulq_A Response regulator aspa 99.4 5.5E-11 1.9E-15 117.5 23.7 227 174-400 23-292 (383)
70 3nf1_A KLC 1, kinesin light ch 99.4 2.1E-12 7.1E-17 123.4 13.0 240 160-400 24-306 (311)
71 3nf1_A KLC 1, kinesin light ch 99.4 3.6E-12 1.2E-16 121.7 14.7 169 266-434 26-222 (311)
72 3vtx_A MAMA; tetratricopeptide 99.4 9.7E-11 3.3E-15 102.5 22.7 167 197-366 4-170 (184)
73 4abn_A Tetratricopeptide repea 99.4 3.3E-11 1.1E-15 122.5 19.7 192 232-428 101-313 (474)
74 3q15_A PSP28, response regulat 99.3 5.4E-10 1.9E-14 110.1 26.8 128 410-540 225-364 (378)
75 3q15_A PSP28, response regulat 99.3 1.9E-10 6.6E-15 113.4 22.3 308 194-505 6-364 (378)
76 3as5_A MAMA; tetratricopeptide 99.3 4.4E-10 1.5E-14 97.9 21.9 163 235-400 10-172 (186)
77 1hz4_A MALT regulatory protein 99.3 9.3E-10 3.2E-14 108.2 26.4 300 236-543 17-351 (373)
78 1hz4_A MALT regulatory protein 99.3 2.9E-09 1E-13 104.6 29.7 269 166-434 17-320 (373)
79 3as5_A MAMA; tetratricopeptide 99.3 7E-10 2.4E-14 96.6 21.0 163 200-365 10-172 (186)
80 4e6h_A MRNA 3'-END-processing 99.2 5.9E-08 2E-12 101.5 36.7 407 138-552 44-545 (679)
81 4gyw_A UDP-N-acetylglucosamine 99.2 7.3E-10 2.5E-14 117.3 20.7 164 198-364 9-172 (723)
82 4gyw_A UDP-N-acetylglucosamine 99.2 1E-09 3.5E-14 116.2 20.7 168 161-331 7-174 (723)
83 3edt_B KLC 2, kinesin light ch 99.2 6.3E-10 2.2E-14 104.2 16.1 156 175-330 13-197 (283)
84 4i17_A Hypothetical protein; T 99.1 6.7E-09 2.3E-13 94.2 21.5 196 161-367 5-210 (228)
85 3edt_B KLC 2, kinesin light ch 99.1 5.7E-10 2E-14 104.5 14.7 137 160-296 40-198 (283)
86 4i17_A Hypothetical protein; T 99.1 1.1E-08 3.7E-13 92.8 22.1 201 196-409 5-215 (228)
87 1qqe_A Vesicular transport pro 99.0 5.7E-09 2E-13 98.7 16.4 130 268-399 118-267 (292)
88 1qqe_A Vesicular transport pro 99.0 8.8E-09 3E-13 97.4 17.4 216 317-551 32-277 (292)
89 3mv2_B Coatomer subunit epsilo 99.0 7.6E-08 2.6E-12 89.6 22.9 10 495-504 271-280 (310)
90 2fo7_A Synthetic consensus TPR 99.0 2.5E-08 8.5E-13 81.4 17.1 129 165-295 3-131 (136)
91 2fo7_A Synthetic consensus TPR 99.0 2.7E-08 9.3E-13 81.1 17.2 127 271-400 5-131 (136)
92 3mv2_B Coatomer subunit epsilo 99.0 2.2E-07 7.4E-12 86.5 24.0 144 252-399 85-238 (310)
93 3qky_A Outer membrane assembly 98.9 5.3E-08 1.8E-12 90.3 19.0 188 160-366 12-224 (261)
94 3dra_A Protein farnesyltransfe 98.9 8.2E-07 2.8E-11 83.4 26.9 228 319-552 50-297 (306)
95 3qky_A Outer membrane assembly 98.9 5.6E-08 1.9E-12 90.1 19.0 182 197-401 14-224 (261)
96 3urz_A Uncharacterized protein 98.9 9.7E-08 3.3E-12 85.1 18.1 57 239-295 60-116 (208)
97 3urz_A Uncharacterized protein 98.9 1.2E-07 4E-12 84.6 18.2 135 270-410 57-193 (208)
98 2ifu_A Gamma-SNAP; membrane fu 98.9 7.5E-08 2.6E-12 91.7 17.4 184 346-534 45-254 (307)
99 3dra_A Protein farnesyltransfe 98.9 2.1E-06 7.3E-11 80.6 26.8 223 174-400 44-286 (306)
100 2pzi_A Probable serine/threoni 98.9 2.5E-08 8.5E-13 106.0 15.0 173 209-387 402-583 (681)
101 3rjv_A Putative SEL1 repeat pr 98.8 9.8E-07 3.3E-11 78.8 22.4 176 356-543 5-199 (212)
102 2pzi_A Probable serine/threoni 98.8 6.3E-08 2.1E-12 102.9 16.8 186 174-364 402-603 (681)
103 2yhc_A BAMD, UPF0169 lipoprote 98.8 6E-07 2E-11 81.0 20.9 188 162-367 3-214 (225)
104 3rjv_A Putative SEL1 repeat pr 98.8 4.5E-07 1.5E-11 81.0 19.7 175 321-507 5-198 (212)
105 2uy1_A Cleavage stimulation fa 98.8 2.6E-05 9E-10 79.0 34.6 343 177-540 28-412 (493)
106 4ga2_A E3 SUMO-protein ligase 98.8 3.4E-08 1.2E-12 82.9 11.2 120 244-365 8-128 (150)
107 2r5s_A Uncharacterized protein 98.8 7.8E-08 2.7E-12 83.2 13.9 156 240-398 13-170 (176)
108 3qou_A Protein YBBN; thioredox 98.8 1.1E-07 3.7E-12 89.5 15.8 164 197-362 116-280 (287)
109 2vsy_A XCC0866; transferase, g 98.8 1.6E-07 5.4E-12 97.8 18.5 155 176-333 2-159 (568)
110 3qou_A Protein YBBN; thioredox 98.8 1.9E-07 6.5E-12 87.9 16.9 167 160-329 114-282 (287)
111 2vsy_A XCC0866; transferase, g 98.8 2.2E-07 7.5E-12 96.7 18.6 154 211-367 2-158 (568)
112 2yhc_A BAMD, UPF0169 lipoprote 98.8 6.7E-07 2.3E-11 80.7 19.4 83 197-279 3-90 (225)
113 2r5s_A Uncharacterized protein 98.8 1.3E-07 4.3E-12 81.8 13.7 156 168-326 11-168 (176)
114 4ga2_A E3 SUMO-protein ligase 98.7 6.7E-08 2.3E-12 81.1 9.9 139 210-351 9-148 (150)
115 3u3w_A Transcriptional activat 98.7 3.4E-06 1.1E-10 79.5 22.4 127 273-399 121-264 (293)
116 3q7a_A Farnesyltransferase alp 98.7 1.1E-05 3.9E-10 76.5 25.6 244 276-552 63-341 (349)
117 2ifu_A Gamma-SNAP; membrane fu 98.7 8.1E-07 2.8E-11 84.5 18.0 124 205-329 43-182 (307)
118 3u3w_A Transcriptional activat 98.7 4.4E-06 1.5E-10 78.7 22.5 163 378-540 81-265 (293)
119 2qfc_A PLCR protein; TPR, HTH, 98.7 4.7E-06 1.6E-10 78.5 22.6 126 239-364 121-264 (293)
120 3q7a_A Farnesyltransferase alp 98.7 3.3E-05 1.1E-09 73.3 28.0 230 167-400 58-330 (349)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.1E-06 7.4E-11 76.4 18.4 124 272-401 11-150 (213)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.4E-06 8.3E-11 76.0 18.6 128 165-297 8-151 (213)
123 2qfc_A PLCR protein; TPR, HTH, 98.6 5.2E-06 1.8E-10 78.2 21.4 166 374-539 77-264 (293)
124 2uy1_A Cleavage stimulation fa 98.6 0.00012 4.2E-09 74.0 32.1 343 144-505 31-412 (493)
125 1a17_A Serine/threonine protei 98.5 3E-06 1E-10 71.8 16.0 129 409-540 15-145 (166)
126 1a17_A Serine/threonine protei 98.5 3.7E-06 1.2E-10 71.3 16.1 94 270-365 16-109 (166)
127 4gco_A Protein STI-1; structur 98.5 1.4E-06 4.9E-11 70.3 12.5 95 444-540 15-109 (126)
128 3gw4_A Uncharacterized protein 98.5 1.4E-06 4.8E-11 76.8 13.4 154 246-399 5-174 (203)
129 1na0_A Designed protein CTPR3; 98.5 4.9E-06 1.7E-10 66.3 15.5 25 339-363 79-103 (125)
130 3gw4_A Uncharacterized protein 98.5 1.3E-06 4.5E-11 77.0 13.0 133 233-365 26-175 (203)
131 2c2l_A CHIP, carboxy terminus 98.5 9.8E-06 3.3E-10 75.8 19.1 193 197-400 3-198 (281)
132 3dss_A Geranylgeranyl transfer 98.5 4.1E-05 1.4E-09 72.3 23.1 245 279-554 41-315 (331)
133 3gyz_A Chaperone protein IPGC; 98.5 4.3E-06 1.5E-10 69.8 14.7 99 442-542 36-134 (151)
134 4gco_A Protein STI-1; structur 98.5 4.8E-06 1.6E-10 67.2 14.6 24 340-363 84-107 (126)
135 2c2l_A CHIP, carboxy terminus 98.5 1.1E-06 3.7E-11 82.3 12.0 197 161-366 2-199 (281)
136 1na0_A Designed protein CTPR3; 98.5 6E-06 2E-10 65.8 14.9 112 163-276 9-120 (125)
137 2lni_A Stress-induced-phosphop 98.4 5.7E-06 2E-10 67.0 14.5 26 339-364 86-111 (133)
138 2lni_A Stress-induced-phosphop 98.4 4E-06 1.4E-10 67.9 13.5 120 160-281 13-132 (133)
139 2vyi_A SGTA protein; chaperone 98.4 5.9E-06 2E-10 66.5 14.4 94 270-365 15-108 (131)
140 2e2e_A Formate-dependent nitri 98.4 2.1E-06 7.2E-11 74.0 12.3 120 245-366 22-144 (177)
141 2vyi_A SGTA protein; chaperone 98.4 8.6E-06 3E-10 65.5 15.0 116 234-351 13-128 (131)
142 4f3v_A ESX-1 secretion system 98.4 8.4E-06 2.9E-10 74.8 16.0 187 175-366 18-237 (282)
143 4f3v_A ESX-1 secretion system 98.4 4E-06 1.4E-10 77.0 13.6 189 210-402 18-238 (282)
144 2vgx_A Chaperone SYCD; alterna 98.4 2E-06 6.9E-11 71.7 10.4 92 412-505 26-117 (148)
145 1p5q_A FKBP52, FK506-binding p 98.4 1E-05 3.4E-10 77.8 16.4 94 303-398 197-291 (336)
146 2e2e_A Formate-dependent nitri 98.4 4.1E-06 1.4E-10 72.1 12.3 122 382-506 20-144 (177)
147 2fbn_A 70 kDa peptidylprolyl i 98.3 1.1E-06 3.6E-11 77.5 8.2 124 267-392 38-176 (198)
148 2vgx_A Chaperone SYCD; alterna 98.3 3.3E-06 1.1E-10 70.4 10.7 98 266-365 20-117 (148)
149 1p5q_A FKBP52, FK506-binding p 98.3 1.2E-05 4.1E-10 77.3 15.7 124 197-321 146-283 (336)
150 3gyz_A Chaperone protein IPGC; 98.3 7E-06 2.4E-10 68.5 12.1 98 198-296 36-133 (151)
151 1elw_A TPR1-domain of HOP; HOP 98.2 5.1E-05 1.7E-09 59.5 15.4 108 163-272 4-111 (118)
152 1elw_A TPR1-domain of HOP; HOP 98.2 4.6E-05 1.6E-09 59.8 15.0 92 271-364 8-99 (118)
153 2xcb_A PCRH, regulatory protei 98.2 1.1E-05 3.8E-10 66.6 11.2 98 266-365 17-114 (142)
154 2xcb_A PCRH, regulatory protei 98.2 2E-05 6.8E-10 65.0 12.7 91 413-505 24-114 (142)
155 3dss_A Geranylgeranyl transfer 98.2 0.0015 5E-08 61.7 26.7 148 251-401 48-222 (331)
156 3upv_A Heat shock protein STI1 98.2 4.4E-05 1.5E-09 61.3 14.4 94 305-400 7-100 (126)
157 3upv_A Heat shock protein STI1 98.2 3.2E-05 1.1E-09 62.1 13.4 16 208-223 14-29 (126)
158 4gcn_A Protein STI-1; structur 98.2 1.9E-05 6.6E-10 63.7 11.8 95 445-540 11-111 (127)
159 2fbn_A 70 kDa peptidylprolyl i 98.2 3.3E-05 1.1E-09 67.8 14.1 95 268-364 89-184 (198)
160 3q49_B STIP1 homology and U bo 98.2 4.5E-05 1.6E-09 62.1 14.0 97 407-505 9-105 (137)
161 2kck_A TPR repeat; tetratricop 98.2 1.7E-05 5.7E-10 61.8 10.9 98 443-542 7-107 (112)
162 3sz7_A HSC70 cochaperone (SGT) 98.1 3.3E-05 1.1E-09 65.4 13.2 98 407-506 11-108 (164)
163 4b4t_Q 26S proteasome regulato 98.1 0.00013 4.5E-09 72.6 19.5 160 310-469 12-202 (434)
164 4b4t_Q 26S proteasome regulato 98.1 0.00018 6.1E-09 71.7 20.2 196 170-365 11-244 (434)
165 3q49_B STIP1 homology and U bo 98.1 5.7E-05 2E-09 61.5 13.5 97 198-295 9-105 (137)
166 2dba_A Smooth muscle cell asso 98.1 0.00013 4.5E-09 60.0 15.4 98 266-366 27-128 (148)
167 3sz7_A HSC70 cochaperone (SGT) 98.1 7.1E-05 2.4E-09 63.3 14.0 96 267-364 11-106 (164)
168 1hxi_A PEX5, peroxisome target 98.1 3.5E-05 1.2E-09 61.5 11.3 93 446-540 21-113 (121)
169 4gcn_A Protein STI-1; structur 98.1 6.6E-05 2.3E-09 60.5 13.0 23 342-364 88-110 (127)
170 2dba_A Smooth muscle cell asso 98.1 0.00012 4E-09 60.3 15.0 113 160-275 25-141 (148)
171 1elr_A TPR2A-domain of HOP; HO 98.1 4E-05 1.4E-09 61.5 11.6 24 269-292 40-63 (131)
172 2kck_A TPR repeat; tetratricop 98.1 3.6E-05 1.2E-09 59.8 10.9 100 266-366 5-106 (112)
173 1elr_A TPR2A-domain of HOP; HO 98.0 3.9E-05 1.3E-09 61.6 11.2 96 200-296 6-108 (131)
174 3ro3_A PINS homolog, G-protein 98.0 6.3E-05 2.1E-09 62.9 11.6 131 269-399 11-156 (164)
175 3ro3_A PINS homolog, G-protein 97.9 5.7E-05 1.9E-09 63.1 10.7 24 340-363 132-155 (164)
176 1hxi_A PEX5, peroxisome target 97.9 7.1E-05 2.4E-09 59.7 10.3 27 267-293 85-111 (121)
177 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00023 7.8E-09 71.5 15.4 125 266-392 267-405 (457)
178 2xev_A YBGF; tetratricopeptide 97.9 0.00062 2.1E-08 54.4 15.1 11 212-222 16-26 (129)
179 1wao_1 Serine/threonine protei 97.9 4.1E-05 1.4E-09 77.4 9.6 117 417-536 16-134 (477)
180 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00024 8.2E-09 71.4 14.8 124 163-287 268-405 (457)
181 1ihg_A Cyclophilin 40; ppiase 97.8 0.00021 7E-09 69.5 13.7 140 372-533 223-362 (370)
182 2xev_A YBGF; tetratricopeptide 97.8 0.00051 1.7E-08 55.0 13.7 56 170-226 9-67 (129)
183 3k9i_A BH0479 protein; putativ 97.8 4.3E-05 1.5E-09 60.5 6.8 85 211-295 3-89 (117)
184 1wao_1 Serine/threonine protei 97.8 5.5E-05 1.9E-09 76.4 9.2 118 242-361 15-134 (477)
185 3k9i_A BH0479 protein; putativ 97.8 4.4E-05 1.5E-09 60.4 6.7 86 420-506 3-90 (117)
186 1ihg_A Cyclophilin 40; ppiase 97.8 0.00026 8.8E-09 68.8 13.1 138 198-356 223-360 (370)
187 1dce_A Protein (RAB geranylger 97.7 0.002 6.9E-08 66.3 20.1 171 249-423 45-242 (567)
188 3rkv_A Putative peptidylprolyl 97.7 0.00038 1.3E-08 58.5 12.4 64 337-401 63-126 (162)
189 3rkv_A Putative peptidylprolyl 97.7 0.00048 1.7E-08 57.9 12.4 97 200-296 13-126 (162)
190 1dce_A Protein (RAB geranylger 97.7 0.0012 4.2E-08 67.9 17.4 172 215-390 46-244 (567)
191 3n71_A Histone lysine methyltr 97.6 0.00041 1.4E-08 69.7 12.5 126 417-542 319-465 (490)
192 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00023 7.8E-09 68.3 10.1 61 304-365 232-292 (338)
193 2hr2_A Hypothetical protein; a 97.6 0.00077 2.6E-08 55.8 11.8 96 200-295 13-130 (159)
194 1klx_A Cysteine rich protein B 97.6 0.00089 3E-08 54.6 12.1 110 282-402 10-127 (138)
195 2hr2_A Hypothetical protein; a 97.6 0.0011 3.7E-08 54.9 12.3 93 308-400 17-130 (159)
196 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00024 8.2E-09 68.2 9.9 148 163-331 179-328 (338)
197 3n71_A Histone lysine methyltr 97.5 0.00046 1.6E-08 69.3 11.6 124 277-400 319-463 (490)
198 2l6j_A TPR repeat-containing p 97.5 6.7E-05 2.3E-09 58.3 4.3 92 442-536 4-102 (111)
199 1klx_A Cysteine rich protein B 97.5 0.003 1E-07 51.4 14.3 89 273-367 31-127 (138)
200 2kat_A Uncharacterized protein 97.5 0.00087 3E-08 52.5 10.2 80 425-506 3-82 (115)
201 2l6j_A TPR repeat-containing p 97.4 0.00033 1.1E-08 54.3 6.7 96 162-259 3-104 (111)
202 2kat_A Uncharacterized protein 97.3 0.0015 5E-08 51.1 10.0 78 252-330 4-81 (115)
203 1na3_A Designed protein CTPR2; 97.3 0.0027 9.2E-08 46.8 11.0 82 442-525 9-90 (91)
204 1zu2_A Mitochondrial import re 97.3 0.00034 1.2E-08 57.8 5.6 86 419-506 14-120 (158)
205 1na3_A Designed protein CTPR2; 97.2 0.0027 9.2E-08 46.8 9.9 60 165-225 11-70 (91)
206 3ma5_A Tetratricopeptide repea 97.1 0.0029 1E-07 48.0 9.0 64 441-505 6-69 (100)
207 3ma5_A Tetratricopeptide repea 97.1 0.0023 7.8E-08 48.6 8.3 64 476-540 6-69 (100)
208 1zu2_A Mitochondrial import re 97.0 0.0022 7.4E-08 52.9 7.6 98 210-310 14-132 (158)
209 3mkq_A Coatomer beta'-subunit; 96.7 0.1 3.6E-06 56.2 20.8 29 336-364 680-708 (814)
210 3ly7_A Transcriptional activat 96.7 0.023 7.9E-07 53.8 13.3 69 474-544 274-342 (372)
211 3qww_A SET and MYND domain-con 96.5 0.016 5.5E-07 57.1 11.6 85 455-539 311-409 (433)
212 3mkq_A Coatomer beta'-subunit; 96.4 0.17 5.9E-06 54.5 20.3 155 171-363 607-762 (814)
213 3ly7_A Transcriptional activat 96.4 0.056 1.9E-06 51.2 13.7 63 301-365 276-338 (372)
214 3qwp_A SET and MYND domain-con 96.3 0.033 1.1E-06 54.9 12.6 88 452-539 297-398 (429)
215 3qww_A SET and MYND domain-con 96.1 0.014 4.9E-07 57.4 8.8 60 339-398 342-408 (433)
216 3qwp_A SET and MYND domain-con 96.1 0.032 1.1E-06 55.0 10.9 61 269-329 331-398 (429)
217 3bee_A Putative YFRE protein; 96.1 0.049 1.7E-06 40.5 9.4 48 458-506 25-72 (93)
218 2kc7_A BFR218_protein; tetratr 96.0 0.018 6E-07 43.2 6.9 26 269-294 37-62 (99)
219 2v5f_A Prolyl 4-hydroxylase su 95.9 0.027 9.3E-07 42.9 7.4 70 440-511 3-78 (104)
220 2kc7_A BFR218_protein; tetratr 95.8 0.042 1.5E-06 41.0 8.5 54 172-226 9-63 (99)
221 1pc2_A Mitochondria fission pr 95.8 0.059 2E-06 43.9 9.4 85 423-511 14-103 (152)
222 3mkq_B Coatomer subunit alpha; 95.2 1.2 3.9E-05 37.3 16.1 45 244-293 16-60 (177)
223 3bee_A Putative YFRE protein; 95.2 0.15 5.3E-06 37.7 9.2 46 319-365 26-71 (93)
224 1wy6_A Hypothetical protein ST 95.1 0.93 3.2E-05 35.6 16.7 139 175-334 19-157 (172)
225 2v5f_A Prolyl 4-hydroxylase su 95.1 0.18 6.1E-06 38.2 9.6 25 201-225 8-32 (104)
226 1pc2_A Mitochondria fission pr 94.8 0.17 5.8E-06 41.1 9.1 79 217-296 17-100 (152)
227 3mkq_B Coatomer subunit alpha; 94.7 1.6 5.3E-05 36.5 16.4 97 313-430 16-112 (177)
228 1wy6_A Hypothetical protein ST 94.7 1.2 4.2E-05 35.0 15.9 63 445-508 94-156 (172)
229 3u64_A Protein TP_0956; tetrat 94.4 0.53 1.8E-05 42.8 12.1 83 320-404 181-272 (301)
230 3u64_A Protein TP_0956; tetrat 94.0 0.34 1.2E-05 44.1 10.1 107 424-540 180-297 (301)
231 4ady_A RPN2, 26S proteasome re 93.4 10 0.00034 40.8 24.1 16 349-364 536-551 (963)
232 4h7y_A Dual specificity protei 93.0 1.7 6E-05 34.9 11.4 53 281-334 74-126 (161)
233 4ady_A RPN2, 26S proteasome re 92.5 13 0.00045 39.9 24.3 241 272-522 416-671 (963)
234 4h7y_A Dual specificity protei 92.0 2.3 7.7E-05 34.2 10.8 51 456-507 74-124 (161)
235 1nzn_A CGI-135 protein, fissio 91.7 2 6.8E-05 33.5 10.2 81 424-506 18-103 (126)
236 1nzn_A CGI-135 protein, fissio 91.5 2 6.8E-05 33.5 10.0 82 214-296 17-103 (126)
237 3lvg_A Clathrin heavy chain 1; 90.9 9.9E-05 3.4E-09 71.3 -17.9 234 233-502 54-287 (624)
238 3lvg_A Clathrin heavy chain 1; 90.7 0.037 1.3E-06 53.8 -0.6 215 162-392 82-324 (624)
239 4b4t_P 26S proteasome regulato 90.5 14 0.00048 36.2 21.1 50 177-226 30-84 (445)
240 4gns_B Protein CSD3, chitin bi 90.2 0.88 3E-05 47.7 9.0 125 167-293 252-397 (754)
241 2ff4_A Probable regulatory pro 90.2 1.1 3.7E-05 43.4 9.2 54 240-293 178-231 (388)
242 4gns_B Protein CSD3, chitin bi 90.0 3.7 0.00013 43.1 13.5 54 484-539 344-398 (754)
243 1v54_E Cytochrome C oxidase po 89.7 1.8 6E-05 32.0 7.5 48 178-225 25-72 (109)
244 2ff4_A Probable regulatory pro 89.5 4.2 0.00014 39.2 12.8 75 445-520 174-253 (388)
245 4b4t_P 26S proteasome regulato 89.3 17 0.0006 35.5 20.9 181 156-364 49-245 (445)
246 4fhn_B Nucleoporin NUP120; pro 88.1 8.4 0.00029 43.1 15.6 191 238-435 817-1049(1139)
247 4fhn_B Nucleoporin NUP120; pro 87.3 13 0.00044 41.6 16.5 146 342-495 817-989 (1139)
248 3lpz_A GET4 (YOR164C homolog); 86.3 21 0.00072 33.1 21.9 164 238-434 40-214 (336)
249 2y69_E Cytochrome C oxidase su 85.5 5.4 0.00018 31.2 8.4 59 216-274 71-129 (152)
250 3lpz_A GET4 (YOR164C homolog); 85.4 23 0.0008 32.8 20.9 111 165-290 37-159 (336)
251 1v54_E Cytochrome C oxidase po 84.4 7.3 0.00025 28.8 8.2 62 457-519 25-86 (109)
252 3o48_A Mitochondria fission 1 83.9 11 0.00038 29.5 9.7 73 437-511 35-110 (134)
253 1qsa_A Protein (soluble lytic 83.2 44 0.0015 34.2 29.1 134 174-316 17-150 (618)
254 3ffl_A Anaphase-promoting comp 82.7 6.4 0.00022 32.2 8.3 35 511-545 121-155 (167)
255 1y8m_A FIS1; mitochondria, unk 82.2 17 0.00059 28.9 11.5 73 437-511 34-109 (144)
256 3o48_A Mitochondria fission 1 81.5 17 0.00059 28.4 10.9 66 474-539 37-105 (134)
257 2wpv_A GET4, UPF0363 protein Y 79.6 38 0.0013 31.2 20.7 168 339-540 35-216 (312)
258 3ffl_A Anaphase-promoting comp 79.3 21 0.00071 29.3 10.2 60 166-225 23-90 (167)
259 3esl_A Checkpoint serine/threo 78.7 17 0.00059 30.8 9.9 57 455-511 92-149 (202)
260 2wpv_A GET4, UPF0363 protein Y 78.5 41 0.0014 30.9 21.4 112 165-291 35-158 (312)
261 1zbp_A Hypothetical protein VP 78.4 23 0.0008 31.6 11.1 56 171-227 5-60 (273)
262 2y69_E Cytochrome C oxidase su 77.5 22 0.00076 27.9 9.2 61 319-380 70-130 (152)
263 2uwj_G Type III export protein 76.1 21 0.00071 26.3 8.2 78 317-402 21-98 (115)
264 2p58_C Putative type III secre 75.6 22 0.00074 26.2 8.9 78 317-402 22-99 (116)
265 1zbp_A Hypothetical protein VP 72.1 9 0.00031 34.2 6.8 53 243-295 7-59 (273)
266 4b4t_R RPN7, 26S proteasome re 71.7 29 0.001 33.7 11.3 61 304-364 133-195 (429)
267 1y8m_A FIS1; mitochondria, unk 68.7 42 0.0014 26.6 13.0 48 424-471 59-106 (144)
268 4a1g_A Mitotic checkpoint seri 68.6 42 0.0014 27.0 9.5 50 461-510 84-134 (152)
269 4b4t_R RPN7, 26S proteasome re 67.6 36 0.0012 33.0 10.9 59 236-294 134-195 (429)
270 3ltm_A Alpha-REP4; protein eng 65.4 61 0.0021 27.3 18.9 49 196-248 31-79 (211)
271 1wdy_A 2-5A-dependent ribonucl 64.6 11 0.00037 33.8 6.2 82 168-257 7-93 (285)
272 2wvi_A Mitotic checkpoint seri 63.3 60 0.0021 26.5 9.7 55 459-513 77-132 (164)
273 3txn_A 26S proteasome regulato 62.5 1.1E+02 0.0037 29.2 21.7 166 198-363 19-207 (394)
274 2uwj_G Type III export protein 62.2 44 0.0015 24.6 8.7 86 212-305 20-105 (115)
275 2d2s_A Exocyst complex compone 61.7 36 0.0012 29.8 8.6 24 168-191 23-46 (235)
276 1k1a_A B-cell lymphoma 3-encod 60.0 23 0.00079 30.6 7.4 86 170-259 13-102 (241)
277 1wdy_A 2-5A-dependent ribonucl 56.7 27 0.00093 31.0 7.5 50 204-257 8-60 (285)
278 3eiq_C Programmed cell death p 56.7 1.3E+02 0.0044 28.2 14.0 69 340-409 220-290 (358)
279 2nsz_A Programmed cell death p 55.3 71 0.0024 24.8 9.4 23 238-260 12-34 (129)
280 1qsa_A Protein (soluble lytic 55.0 1.9E+02 0.0064 29.6 31.9 199 282-501 229-437 (618)
281 4aez_C MAD3, mitotic spindle c 54.5 57 0.0019 28.1 8.3 53 459-511 131-184 (223)
282 2ion_A PDCD4, programmed cell 53.9 59 0.002 26.1 8.0 22 238-259 14-35 (152)
283 2p58_C Putative type III secre 51.8 69 0.0024 23.6 9.8 79 212-297 21-99 (116)
284 3hra_A Ankyrin repeat family p 49.7 14 0.00046 31.1 3.9 19 240-258 76-94 (201)
285 3kea_A K1L; tropism, ANK repea 47.5 23 0.00078 32.0 5.3 19 344-362 165-183 (285)
286 3eu9_A Huntingtin-interacting 45.7 27 0.00092 30.0 5.3 15 242-256 48-62 (240)
287 1k1a_A B-cell lymphoma 3-encod 45.5 61 0.0021 27.8 7.7 53 205-257 13-67 (241)
288 2qx5_A Nucleoporin NIC96; mRNA 44.3 2.8E+02 0.0097 28.5 14.2 343 168-538 157-564 (661)
289 2d2s_A Exocyst complex compone 43.4 82 0.0028 27.5 7.9 23 413-435 24-46 (235)
290 4a1g_A Mitotic checkpoint seri 42.9 1.2E+02 0.004 24.4 8.0 54 180-233 82-136 (152)
291 2wvi_A Mitotic checkpoint seri 41.1 60 0.0021 26.5 6.1 51 425-475 78-129 (164)
292 3ltm_A Alpha-REP4; protein eng 40.9 1.6E+02 0.0054 24.6 19.4 154 231-400 31-184 (211)
293 4g8k_A 2-5A-dependent ribonucl 40.7 91 0.0031 28.6 8.5 290 167-479 26-331 (337)
294 3mv2_A Coatomer subunit alpha; 40.4 2.2E+02 0.0075 26.1 11.4 49 459-507 187-237 (325)
295 3txn_A 26S proteasome regulato 40.1 2.5E+02 0.0086 26.7 24.6 166 163-329 19-208 (394)
296 2fe3_A Peroxide operon regulat 39.7 1.3E+02 0.0045 23.7 8.1 60 467-527 12-71 (145)
297 2nsz_A Programmed cell death p 39.0 1.3E+02 0.0045 23.2 9.1 67 270-337 10-78 (129)
298 2ion_A PDCD4, programmed cell 38.5 1.3E+02 0.0045 24.0 7.8 66 270-336 12-79 (152)
299 1mzb_A Ferric uptake regulatio 35.9 1.4E+02 0.0046 23.3 7.5 35 492-526 33-67 (136)
300 2rfa_A Transient receptor pote 35.4 91 0.0031 26.5 7.1 22 346-367 160-181 (232)
301 4fke_A Aminopeptidase N; zinc 35.3 4.5E+02 0.015 28.3 14.6 91 166-261 689-786 (909)
302 2fe3_A Peroxide operon regulat 35.3 1.2E+02 0.0042 23.9 7.2 62 187-249 11-72 (145)
303 3pvs_A Replication-associated 34.8 3.2E+02 0.011 26.4 12.3 21 351-371 269-289 (447)
304 3kea_A K1L; tropism, ANK repea 34.8 34 0.0012 30.8 4.3 145 171-327 36-183 (285)
305 2xig_A Ferric uptake regulatio 34.6 1.4E+02 0.0047 23.8 7.4 60 467-527 17-76 (150)
306 3l6a_A Eukaryotic translation 34.3 42 0.0014 31.7 4.8 26 374-399 14-39 (364)
307 1n11_A Ankyrin; clathrin, BAND 34.2 73 0.0025 30.6 6.9 21 487-511 351-371 (437)
308 3t8k_A Uncharacterized protein 33.9 89 0.003 25.8 6.5 26 310-335 43-68 (186)
309 1ug3_A EIF4GI, eukaryotic prot 33.2 56 0.0019 30.5 5.5 25 375-399 14-38 (339)
310 2fu4_A Ferric uptake regulatio 32.8 89 0.003 21.6 5.4 59 189-248 8-67 (83)
311 3eyy_A Putative iron uptake re 32.7 1.3E+02 0.0043 23.8 6.9 59 467-527 9-67 (145)
312 2jul_A Calsenilin; EF-hand, ca 32.5 2.5E+02 0.0085 24.4 12.7 131 161-292 109-254 (256)
313 2f6m_A Suppressor protein STP2 32.2 60 0.002 21.7 3.8 47 479-526 4-50 (65)
314 3hra_A Ankyrin repeat family p 32.2 62 0.0021 26.8 5.3 17 346-362 112-128 (201)
315 3esl_A Checkpoint serine/threo 31.8 2.3E+02 0.008 23.9 12.6 56 315-370 92-148 (202)
316 2w57_A Ferric uptake regulatio 31.3 1.5E+02 0.0052 23.5 7.2 59 468-527 8-67 (150)
317 3aji_A 26S proteasome non-ATPa 31.2 71 0.0024 27.2 5.6 19 170-188 10-28 (231)
318 3pvs_A Replication-associated 31.0 3.7E+02 0.013 26.0 12.9 47 317-365 166-220 (447)
319 4aez_C MAD3, mitotic spindle c 31.0 78 0.0027 27.3 5.5 51 425-475 132-183 (223)
320 2keb_A DNA polymerase subunit 30.9 1.6E+02 0.0053 21.5 6.8 56 461-518 28-88 (101)
321 4gq2_M Nucleoporin NUP120; bet 30.7 5.5E+02 0.019 27.8 14.4 48 304-351 899-950 (950)
322 3eu9_A Huntingtin-interacting 30.5 39 0.0013 29.0 3.8 78 172-257 15-97 (240)
323 2xig_A Ferric uptake regulatio 28.8 1.6E+02 0.0055 23.4 6.9 62 187-249 16-77 (150)
324 2r9g_A AAA ATPase, central reg 28.7 2.6E+02 0.009 23.5 9.6 92 308-400 17-116 (204)
325 4fke_A Aminopeptidase N; zinc 28.4 5.8E+02 0.02 27.4 17.6 90 237-331 690-787 (909)
326 3bge_A Predicted ATPase; struc 28.4 2.7E+02 0.0091 23.4 8.4 93 308-400 10-110 (201)
327 1bd8_A P19INK4D CDK4/6 inhibit 28.2 57 0.0019 25.6 4.2 13 210-222 11-23 (156)
328 2fu4_A Ferric uptake regulatio 27.9 1.5E+02 0.0051 20.4 7.0 60 467-527 7-67 (83)
329 3b7b_A Euchromatic histone-lys 27.9 43 0.0015 28.8 3.6 18 240-257 81-98 (237)
330 1s6c_A KV4 potassium channel-i 27.7 2.4E+02 0.0081 22.6 13.9 66 160-225 35-102 (183)
331 3t8k_A Uncharacterized protein 27.5 1.4E+02 0.0049 24.5 6.7 50 495-544 131-183 (186)
332 3aji_A 26S proteasome non-ATPa 27.3 1.7E+02 0.0058 24.6 7.5 52 205-257 10-61 (231)
333 3b7b_A Euchromatic histone-lys 26.8 82 0.0028 26.9 5.3 17 240-256 48-64 (237)
334 4gq2_M Nucleoporin NUP120; bet 26.7 4.8E+02 0.016 28.3 12.2 88 413-506 816-926 (950)
335 3eyy_A Putative iron uptake re 26.6 2.1E+02 0.007 22.5 7.1 33 215-247 34-66 (145)
336 3jxi_A Vanilloid receptor-rela 26.2 19 0.00065 31.8 0.9 25 208-232 12-36 (260)
337 3ctd_A Putative ATPase, AAA fa 26.0 3E+02 0.01 23.3 9.4 92 378-470 38-137 (213)
338 3ltj_A Alpharep-4; protein eng 25.6 2.8E+02 0.0094 22.7 20.3 18 370-387 150-167 (201)
339 2f6m_A Suppressor protein STP2 25.3 1.1E+02 0.0039 20.3 4.2 45 340-385 5-49 (65)
340 2ijq_A Hypothetical protein; s 25.0 2.7E+02 0.0094 22.5 8.3 52 489-540 44-103 (161)
341 3kae_A CDC27, possible protein 25.0 2.9E+02 0.0099 22.7 7.7 26 512-537 114-139 (242)
342 4ets_A Ferric uptake regulatio 24.8 2.1E+02 0.0072 23.0 7.0 56 470-526 26-83 (162)
343 3iol_B Glucagon; receptor-liga 24.3 82 0.0028 17.4 2.9 13 144-156 17-29 (31)
344 3c5t_B Exendin-4, exenatide; l 24.0 81 0.0028 17.4 2.7 12 144-155 9-20 (31)
345 2yru_A Steroid receptor RNA ac 23.1 1.4E+02 0.0047 22.8 5.0 41 186-226 49-89 (118)
346 3kae_A CDC27, possible protein 23.0 3.2E+02 0.011 22.5 8.3 26 479-504 116-141 (242)
347 2zu6_B Programmed cell death p 22.8 3.1E+02 0.011 24.9 8.4 63 237-299 170-234 (307)
348 4b4t_S RPN3, 26S proteasome re 22.5 5.7E+02 0.02 25.3 11.5 123 233-362 231-366 (523)
349 2keb_A DNA polymerase subunit 22.5 2.3E+02 0.0078 20.7 6.9 57 181-239 27-88 (101)
350 2rfa_A Transient receptor pote 22.4 1.3E+02 0.0045 25.4 5.8 24 380-403 159-182 (232)
351 3ljn_A Hypothetical protein; a 22.2 2.2E+02 0.0075 26.2 7.7 19 344-362 177-195 (364)
352 3mwm_A ZUR, putative metal upt 22.1 1.3E+02 0.0044 23.6 5.0 47 166-212 16-62 (139)
353 2ijq_A Hypothetical protein; s 22.1 3.2E+02 0.011 22.1 8.2 54 453-506 43-104 (161)
354 1s1e_A KV channel interacting 21.2 3.7E+02 0.013 22.6 13.6 107 119-225 26-135 (224)
355 1bpo_A Protein (clathrin); cla 20.8 5.9E+02 0.02 24.8 13.2 58 176-237 342-399 (494)
356 2crb_A Nuclear receptor bindin 20.5 1.5E+02 0.005 21.4 4.2 23 514-536 17-39 (97)
357 2o03_A Probable zinc uptake re 20.2 1.4E+02 0.0047 23.0 4.8 45 168-212 15-59 (131)
358 1oyz_A Hypothetical protein YI 20.1 4.3E+02 0.015 23.0 23.7 255 242-524 15-279 (280)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.4e-35 Score=307.02 Aligned_cols=395 Identities=8% Similarity=-0.014 Sum_probs=339.9
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHH
Q 008633 144 EAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKE---------------GVNPDLETLSIVMDSF 208 (558)
Q Consensus 144 ~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~---------------g~~~~~~t~~~li~~~ 208 (558)
+.|..+|+-+.. .+++..+|+.++..|.+.|++++|.++|+++... |...+..+|..++.+|
T Consensus 134 ~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (597)
T 2xpi_A 134 ARAKCLLTKEDL---YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVY 210 (597)
T ss_dssp HHHHHHHHHTCG---GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHH
Confidence 455666654432 3678999999999999999999999999954222 2234688999999999
Q ss_pred HHhCCHHHHHHHHHHHHhCCCCCCHHHHHH--------------------------------------HHHHHHhcCCHh
Q 008633 209 IRAGQVYKAIQMLGRLEDFGLKFDAESLNV--------------------------------------VLWCLCQRLHVG 250 (558)
Q Consensus 209 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~--------------------------------------ll~~~~~~~~~~ 250 (558)
.+.|++++|+++|++|.+.+.. +...+.. ++..|.+.|+++
T Consensus 211 ~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 289 (597)
T 2xpi_A 211 TNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELR 289 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHH
Confidence 9999999999999999876532 3333332 355667889999
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 251 AASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKE 330 (558)
Q Consensus 251 ~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 330 (558)
+|.++|+++... +++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+++.++.++.+.|++++|.++++++.+
T Consensus 290 ~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 367 (597)
T 2xpi_A 290 RAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367 (597)
T ss_dssp HHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999998764 6799999999999999999999999999999875 33778899999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 008633 331 KGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTI 410 (558)
Q Consensus 331 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 410 (558)
.. +.+..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++
T Consensus 368 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 444 (597)
T 2xpi_A 368 RH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPY 444 (597)
T ss_dssp HC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHH
T ss_pred hC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHH
Confidence 64 3478899999999999999999999999998753 4568899999999999999999999999999874 4577899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHC----CCCCC--HHHHHHHH
Q 008633 411 TSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQES----GYPSD--GEIYEYVI 484 (558)
Q Consensus 411 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li 484 (558)
..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++
T Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 523 (597)
T 2xpi_A 445 LFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLG 523 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 999999999999999999999998865 457899999999999999999999999999865 66787 78999999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchhhhhh
Q 008633 485 AGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQNDYARRLW 551 (558)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 551 (558)
.+|.+.|++++|.++++++.+.+ +.+..+|..++.+|.+.|++++|.+.++++.+. .|+....|
T Consensus 524 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~ 587 (597)
T 2xpi_A 524 HAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMAS 587 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHH
Confidence 99999999999999999999875 447899999999999999999999999999864 45544444
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.2e-34 Score=300.28 Aligned_cols=394 Identities=10% Similarity=0.029 Sum_probs=333.4
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 008633 144 EAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGR 223 (558)
Q Consensus 144 ~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~ 223 (558)
+.|...|+.+.. ..|+..+++.++.+|.+.|++++|..+|+.+... .++..++..++.+|.+.|++++|.++|++
T Consensus 101 ~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 175 (597)
T 2xpi_A 101 KCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGE 175 (597)
T ss_dssp HHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCS
T ss_pred hHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 556666665553 3467788999999999999999999999988643 57888999999999999999999999985
Q ss_pred HHh-C--------------CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHH---------------
Q 008633 224 LED-F--------------GLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIV--------------- 273 (558)
Q Consensus 224 ~~~-~--------------g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l--------------- 273 (558)
+.. . |.+.+..+|+.++.+|.+.|++++|.++|++|....+.+...+..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 255 (597)
T 2xpi_A 176 TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLV 255 (597)
T ss_dssp SCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHH
T ss_pred cCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHH
Confidence 332 2 2344678899999999999999999999999876544455544433
Q ss_pred -----------------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 274 -----------------------ISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKE 330 (558)
Q Consensus 274 -----------------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 330 (558)
+..|.+.|++++|.++|+++.+. .++..+++.++.+|.+.|++++|.++|+++.+
T Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 333 (597)
T 2xpi_A 256 LKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILE 333 (597)
T ss_dssp HHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 55566788899999999988765 57899999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 008633 331 KGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTI 410 (558)
Q Consensus 331 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 410 (558)
.+.. +..+++.++.+|.+.|++++|.++++++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|
T Consensus 334 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 410 (597)
T 2xpi_A 334 IDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAW 410 (597)
T ss_dssp HCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred cCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHH
Confidence 7644 77789999999999999999999999998654 5678899999999999999999999999998753 3467899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008633 411 TSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNI 490 (558)
Q Consensus 411 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 490 (558)
+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.
T Consensus 411 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 488 (597)
T 2xpi_A 411 IGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNK 488 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHh
Confidence 999999999999999999999998865 4578899999999999999999999999999764 55788999999999999
Q ss_pred CCHhHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchhhhhh
Q 008633 491 GQLENAVLVMEESLRK----GFCPS--RLVYSKLSNKLLASNKLESAYNLFRKIKIARQNDYARRLW 551 (558)
Q Consensus 491 g~~~~A~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 551 (558)
|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.. |+....|
T Consensus 489 g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~ 553 (597)
T 2xpi_A 489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--TNDANVH 553 (597)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SCCHHHH
T ss_pred CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHH
Confidence 9999999999999876 66787 7899999999999999999999999998754 4444444
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.6e-32 Score=279.19 Aligned_cols=212 Identities=13% Similarity=0.165 Sum_probs=105.9
Q ss_pred HHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 287 ERVLKEIVAEGFSPDS-LTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 287 ~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
..+.+++.+.+..+.. ..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~--------- 80 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES--------- 80 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS---------
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh---------
Confidence 3344444444433322 234455555555555555555555555555555555555555555544321000
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 008633 366 YNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAY 445 (558)
Q Consensus 366 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 445 (558)
.+.+.+++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 81 -----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 143 (501)
T 4g26_A 81 -----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY 143 (501)
T ss_dssp -----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred -----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee
Confidence 001123445555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008633 446 KLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLA 524 (558)
Q Consensus 446 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 524 (558)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|..
T Consensus 144 n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 144 GPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555555555555555555555555555555555555555555555555544
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=5.6e-31 Score=267.75 Aligned_cols=186 Identities=15% Similarity=0.254 Sum_probs=112.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHCCCCCCHHH
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGR---------IDDAIEVFDTMKEKGCGPDTNA 339 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---------~~~a~~~~~~m~~~g~~p~~~~ 339 (558)
.++.+|++|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. +++|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3555556666666666666666666666666666666666666554432 4556666666666666666666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008633 340 YNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCS 419 (558)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 419 (558)
|++||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 008633 420 YGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSG 454 (558)
Q Consensus 420 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 454 (558)
.|+.++|.+++++|.+.+..|+..||+.++..|+.
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666666666666666666555554
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.3e-27 Score=236.40 Aligned_cols=374 Identities=12% Similarity=0.044 Sum_probs=243.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008633 170 VKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHV 249 (558)
Q Consensus 170 i~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~ 249 (558)
...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..+|.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 344556677777777777666542 2345556666666667777777777776666543 34566677777777777777
Q ss_pred hHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 250 GAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMK 329 (558)
Q Consensus 250 ~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 329 (558)
++|.+.|+++....|.+..+|..+..++.+.|++++|.+.|+++.+.. +-+...+..+...+...|++++|.+.|+++.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 777777777665555556667777777777777777777777776643 1133455556666666777777777777776
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 008633 330 EKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGT 409 (558)
Q Consensus 330 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 409 (558)
+.... +..+|..+...|.+.|++++|.+.|+++.+.+ +.+...|..+...+...|++++|...+++..+.. +.+..+
T Consensus 163 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 163 ETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 65332 55667777777777777777777777776643 3345666667777777777777777777666542 223556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008633 410 ITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCN 489 (558)
Q Consensus 410 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 489 (558)
+..+...+...|++++|...++++.+.+ +.+..+|..+...+.+.|++++|.+.++++.+.. +.+..+|..+...+..
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 6666667777777777777777776643 3345667777777777777777777777776643 4566677777777777
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchhhhhhccc
Q 008633 490 IGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQNDYARRLWRSK 554 (558)
Q Consensus 490 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 554 (558)
.|++++|...++++++.. +.+..++..+..+|.+.|++++|.+.++++.+ ..|+....|...
T Consensus 318 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~l 379 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 379 (388)
T ss_dssp TTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhH
Confidence 777777777777776542 23366677777777777777777777777763 445544444433
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.2e-25 Score=222.09 Aligned_cols=358 Identities=14% Similarity=0.062 Sum_probs=316.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVV 239 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 239 (558)
+.+...+..+...+.+.|++++|...++...+.. +.+..+|..+...+.+.|++++|++.|+++.+.. +.+..+|..+
T Consensus 30 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 107 (388)
T 1w3b_A 30 PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINL 107 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHH
Confidence 3567788888899999999999999999988764 5688999999999999999999999999998764 3356789999
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 008633 240 LWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRID 319 (558)
Q Consensus 240 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 319 (558)
..++.+.|++++|.+.|+++....|.+...+..+...+...|++++|.+.|+++.+.. +-+..+|..+...+.+.|+++
T Consensus 108 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 186 (388)
T 1w3b_A 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIW 186 (388)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999987667778889999999999999999999999999864 335788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 320 DAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEML 399 (558)
Q Consensus 320 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (558)
+|...|+++.+.+.. +...|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|.+.|+++.
T Consensus 187 ~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 264 (388)
T 1w3b_A 187 LAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999987654 67889999999999999999999999998763 4467899999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHH
Q 008633 400 DRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEI 479 (558)
Q Consensus 400 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 479 (558)
+.+ +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..+
T Consensus 265 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 341 (388)
T 1w3b_A 265 ELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAA 341 (388)
T ss_dssp HTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHH
T ss_pred hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHH
Confidence 864 3356788899999999999999999999998864 6678999999999999999999999999998763 556789
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 008633 480 YEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNK 527 (558)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 527 (558)
+..+..++.+.|++++|...++++++. .|+ ...|..+...+...|+
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 342 HSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999999975 454 7788888888776653
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.2e-23 Score=215.43 Aligned_cols=278 Identities=9% Similarity=-0.070 Sum_probs=228.5
Q ss_pred hhhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----cCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 267 VMTYNIVISGWSK---LGQVVEMERVLKEIVA-----EGF--------SPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKE 330 (558)
Q Consensus 267 ~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 330 (558)
...+......+.. .|++++|..+|+++.+ ... +.+..++..+...+...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444454554 8999999999999988 311 12356788888999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 008633 331 KGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTI 410 (558)
Q Consensus 331 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 410 (558)
.... ...+..+..+|...|++++|.+.++++.+.. +.+...|..+...+...|++++|...++++.+.. +.+...+
T Consensus 266 ~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 341 (514)
T 2gw1_A 266 LFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPY 341 (514)
T ss_dssp HCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHH
T ss_pred hCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHH
Confidence 7644 8889999999999999999999999998764 4577889999999999999999999999999864 3355678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHH
Q 008633 411 TSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGY-PSD----GEIYEYVIA 485 (558)
Q Consensus 411 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~ 485 (558)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .++ ...|..+..
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 420 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKAT 420 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 888888999999999999999998764 34567888999999999999999999999875321 112 448899999
Q ss_pred HHHh---cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchhhhhhc
Q 008633 486 GLCN---IGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQNDYARRLWR 552 (558)
Q Consensus 486 ~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 552 (558)
.+.. .|++++|...++++.+.. +.+..++..+...|.+.|++++|.+.+++..+. .|+....|.
T Consensus 421 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~ 487 (514)
T 2gw1_A 421 LLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTMEEKLQ 487 (514)
T ss_dssp HHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHHHHH
T ss_pred HHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccHHHHH
Confidence 9999 999999999999998763 345788999999999999999999999999864 445444443
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2.4e-22 Score=204.15 Aligned_cols=334 Identities=12% Similarity=0.069 Sum_probs=268.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVV 239 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 239 (558)
+.+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+...+...|++++|++.++++.+.+ +.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 3567889999999999999999999999998763 4578899999999999999999999999999875 3368899999
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCCh---hhHHHHHH------------HHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 008633 240 LWCLCQRLHVGAASSLFNSMKGKVLFNV---MTYNIVIS------------GWSKLGQVVEMERVLKEIVAEGFSPDSLT 304 (558)
Q Consensus 240 l~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~li~------------~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 304 (558)
..+|.+.|++++|.+.|+++....+.+. ..+..++. .+.+.|++++|...|+++.+.. +.+..+
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 9999999999999999999988766666 77766644 4888999999999999988764 346788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH------
Q 008633 305 FSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRL------ 378 (558)
Q Consensus 305 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l------ 378 (558)
+..+..++.+.|++++|.++++++.+... .+..++..+..+|...|++++|.+.|+++.+.. +.+...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHH
Confidence 88899999999999999999999887643 367888999999999999999999999988653 3344445444
Q ss_pred ------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 008633 379 ------ISGLLKSRKVADALEVFEEMLDRGIVPS-----TGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKL 447 (558)
Q Consensus 379 ------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 447 (558)
...+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|+..++++.+.. +.+...|..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~ 334 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 77888889999999999988874 344 3467777888888899999999998887754 446788888
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH------------HHhcC-----CHhHHHHHHHH
Q 008633 448 LLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAG------------LCNIG-----QLENAVLVMEE 502 (558)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~------------~~~~g-----~~~~A~~~~~~ 502 (558)
+..+|...|++++|...++++.+.. +-+...+..+..+ |...| +.+++.+.+++
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 8888999999999999999888753 3345566655533 22333 45666777765
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=9.8e-22 Score=199.62 Aligned_cols=334 Identities=14% Similarity=0.060 Sum_probs=279.6
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHH
Q 008633 195 NPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVI 274 (558)
Q Consensus 195 ~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li 274 (558)
+.+...+..+...+.+.|++++|+++|+++.+.. +.+..++..+..+|...|++++|...|+++....|.+..+|..++
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 3467789999999999999999999999998764 447889999999999999999999999999877777899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 008633 275 SGWSKLGQVVEMERVLKEIVAEGFSPDS----LTFSFL------------IEGLGRAGRIDDAIEVFDTMKEKGCGPDTN 338 (558)
Q Consensus 275 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 338 (558)
..|.+.|++++|...|+++.+.. |+. ..+..+ ...+...|++++|...++++.+.... +..
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 178 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAE 178 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChH
Confidence 99999999999999999999764 443 455544 44488999999999999999987543 788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-----
Q 008633 339 AYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSF----- 413 (558)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l----- 413 (558)
++..+..+|.+.|++++|.++|+++.+.. +.+..+|..+...|...|++++|...|+++.+.. +.+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 99999999999999999999999998754 5678999999999999999999999999998753 2233444444
Q ss_pred -------HHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 008633 414 -------LEPLCSYGPPHAAMMMYKKARKVGCKLS----LTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEY 482 (558)
Q Consensus 414 -------l~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 482 (558)
...+...|++++|...++++.+.... + ...|..+..++.+.|++++|+..++++.+.. +.+...|..
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~ 334 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 77888999999999999999885421 2 4578889999999999999999999998753 457889999
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHH------------HHhcC-----CHHHHHHHHHHH
Q 008633 483 VIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNK------------LLASN-----KLESAYNLFRKI 538 (558)
Q Consensus 483 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~m 538 (558)
+..+|...|++++|...++++++. .|+ ..++..+..+ |...| ..+++.+.++++
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 999999999999999999999975 454 6666666633 33344 556677777763
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.2e-20 Score=194.85 Aligned_cols=357 Identities=11% Similarity=0.037 Sum_probs=297.5
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 008633 144 EAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGR 223 (558)
Q Consensus 144 ~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~ 223 (558)
+.|...|+.+.... |+..+|..+..++.+.|++++|...++++.+.+ +.+..++..+..++.+.|++++|.+.|++
T Consensus 23 ~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 98 (514)
T 2gw1_A 23 DDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSV 98 (514)
T ss_dssp HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 56666666666543 689999999999999999999999999999875 45778999999999999999999999999
Q ss_pred HHhCCCCC------------------------------------------------------------------------
Q 008633 224 LEDFGLKF------------------------------------------------------------------------ 231 (558)
Q Consensus 224 ~~~~g~~~------------------------------------------------------------------------ 231 (558)
+.+.+...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (514)
T 2gw1_A 99 LSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA 178 (514)
T ss_dssp HHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCS
T ss_pred HHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHH
Confidence 87765210
Q ss_pred ------CHHHHHHHHHHHHh---cCCHhHHHHHHHHhhc-----C--C-------CCChhhHHHHHHHHHhcCCHHHHHH
Q 008633 232 ------DAESLNVVLWCLCQ---RLHVGAASSLFNSMKG-----K--V-------LFNVMTYNIVISGWSKLGQVVEMER 288 (558)
Q Consensus 232 ------~~~~~~~ll~~~~~---~~~~~~A~~~~~~m~~-----~--~-------~~~~~~~~~li~~~~~~g~~~~A~~ 288 (558)
+...+..+...+.. .|++++|...|+++.. . . +.+..+|..+...+...|++++|..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 258 (514)
T 2gw1_A 179 NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHE 258 (514)
T ss_dssp SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 12333333333443 8999999999998865 2 1 3346788999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 008633 289 VLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNC 368 (558)
Q Consensus 289 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 368 (558)
.++++.+.. |+...+..+...+...|++++|.+.++.+.+.... +..++..+...|...|++++|...|+++.+..
T Consensus 259 ~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 334 (514)
T 2gw1_A 259 DIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD- 334 (514)
T ss_dssp HHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-
T ss_pred HHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-
Confidence 999999875 34888999999999999999999999999887544 67789999999999999999999999998865
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HH
Q 008633 369 EPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGC-KLS----LT 443 (558)
Q Consensus 369 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~ 443 (558)
+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .++ ..
T Consensus 335 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 413 (514)
T 2gw1_A 335 PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIA 413 (514)
T ss_dssp SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHH
Confidence 4567889999999999999999999999998763 33457788888899999999999999999876421 122 44
Q ss_pred HHHHHHHHHHc---CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 008633 444 AYKLLLRRLSG---FGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSR 512 (558)
Q Consensus 444 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 512 (558)
.+..+...+.. .|++++|...++.+.+.. +.+..++..+...+.+.|++++|...++++.+. .|+.
T Consensus 414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~ 482 (514)
T 2gw1_A 414 PLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTM 482 (514)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSH
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--cccc
Confidence 88899999999 999999999999998764 456788999999999999999999999999976 4663
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=5.6e-20 Score=191.06 Aligned_cols=369 Identities=11% Similarity=0.023 Sum_probs=258.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVL 240 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 240 (558)
.+..+|..+...+.+.|++++|+..++++.+.. +.+..++..+...+...|++++|++.|+. .... |+ .....+
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~~--~~--~~~~~~ 130 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSV-LSLN--GD--FDGASI 130 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH-HC--------------
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHH-HhcC--CC--CChHHH
Confidence 456666666666666666666666666666553 23556666666666666666666666642 2211 11 111122
Q ss_pred HHHHhcCCHhHHHHHHHHhhcC-------CCCChh------------------------------hHHHHHHHHHh----
Q 008633 241 WCLCQRLHVGAASSLFNSMKGK-------VLFNVM------------------------------TYNIVISGWSK---- 279 (558)
Q Consensus 241 ~~~~~~~~~~~A~~~~~~m~~~-------~~~~~~------------------------------~~~~li~~~~~---- 279 (558)
..+...+....|...++.+... ..|+.. ....+...+..
T Consensus 131 ~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 210 (537)
T 3fp2_A 131 EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEG 210 (537)
T ss_dssp -CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhh
Confidence 3333344444555555554321 011111 12222222211
Q ss_pred ----cCCHHHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008633 280 ----LGQVVEMERVLKEIVAEGFSPD--------SLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNY 347 (558)
Q Consensus 280 ----~g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 347 (558)
.|++++|..+++++.+.. |+ ..++..+...+...|++++|.+.++.+.+.. |+...+..+...|
T Consensus 211 ~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 286 (537)
T 3fp2_A 211 YLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTL 286 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHH
Confidence 247889999999988753 33 2356667778888999999999999998874 4578888899999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 008633 348 ISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAM 427 (558)
Q Consensus 348 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 427 (558)
...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 287 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 287 ADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp CCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998764 4567889999999999999999999999998864 234567788888899999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc----------CC
Q 008633 428 MMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESG-----YPSDGEIYEYVIAGLCNI----------GQ 492 (558)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~----------g~ 492 (558)
..++++.+.. +.+...+..+...+...|++++|...++++.+.. .......+......+... |+
T Consensus 365 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 443 (537)
T 3fp2_A 365 AFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443 (537)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH
Confidence 9999998864 4456788889999999999999999999887532 111223345556677777 99
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 008633 493 LENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQ 543 (558)
Q Consensus 493 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 543 (558)
+++|...++++.+.. +.+..++..+..+|.+.|++++|.+.+++..+...
T Consensus 444 ~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 444 FNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 999999999998763 34578899999999999999999999999886543
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=1.4e-18 Score=170.28 Aligned_cols=328 Identities=11% Similarity=0.002 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008633 163 VKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWC 242 (558)
Q Consensus 163 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 242 (558)
+..|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|++.++++.+.. +.+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4456666666666666666666666666543 2345666666666666666666666666666543 2244556666666
Q ss_pred HHhcCCHhHHHHHHHHhhcCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 008633 243 LCQRLHVGAASSLFNSMKGKVL---FNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRID 319 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 319 (558)
+...|++++|...|++.....+ .+...+..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 6666666666666666655433 33333333321100 001122245566667777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 320 DAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEML 399 (558)
Q Consensus 320 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (558)
+|.+.++++.+.... +...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...+++..
T Consensus 138 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777776665432 55666667777777777777777777776553 4456666777777777777777777777766
Q ss_pred HCCCCCCHHHHH------------HHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCChhHHHH
Q 008633 400 DRGIVPSTGTIT------------SFLEPLCSYGPPHAAMMMYKKARKVGCKLSL----TAYKLLLRRLSGFGKCGMLLD 463 (558)
Q Consensus 400 ~~~~~p~~~~~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~ 463 (558)
+.. +.+...+. .+...+...|++++|...++++.+.... +. ..+..+...+...|++++|..
T Consensus 216 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 542 11222221 1244466677777777777776664321 22 234456667777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 008633 464 LWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKL 522 (558)
Q Consensus 464 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~ 522 (558)
.+++..+.. +.+..+|..+...+...|++++|...++++++. .|+ ...+..+..+.
T Consensus 294 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 294 ICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 777777642 346667777777777777777777777777755 344 44555554443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=1.7e-18 Score=169.64 Aligned_cols=314 Identities=10% Similarity=0.024 Sum_probs=203.6
Q ss_pred hHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 008633 143 GEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLG 222 (558)
Q Consensus 143 ~~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~ 222 (558)
.+.|..+|+.+.... +.+..+|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++
T Consensus 19 ~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 95 (359)
T 3ieg_A 19 LADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFK 95 (359)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHH
Confidence 356676777666532 3578899999999999999999999999998864 3477899999999999999999999999
Q ss_pred HHHhCCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008633 223 RLEDFGLK--FDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSP 300 (558)
Q Consensus 223 ~~~~~g~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 300 (558)
++.+.... .+...+..+...+. ...+..+...+...|++++|...++++.+.. +.
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~~----------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 152 (359)
T 3ieg_A 96 KVLKSNPSEQEEKEAESQLVKADE----------------------MQRLRSQALDAFDGADYTAAITFLDKILEVC-VW 152 (359)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHhcCCcccChHHHHHHHHHHHH----------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC
Confidence 99986420 23344444421110 1123334445555566666666666555542 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH----
Q 008633 301 DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYT---- 376 (558)
Q Consensus 301 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~---- 376 (558)
+...+..+...+...|++++|...++++.+.... +..++..+...|...|++++|.+.|++..+.. +.+...+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~ 230 (359)
T 3ieg_A 153 DAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQ 230 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHH
Confidence 4455555555666666666666666665554322 45556666666666666666666666655432 22222222
Q ss_pred --------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 008633 377 --------RLISGLLKSRKVADALEVFEEMLDRGIVPST----GTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTA 444 (558)
Q Consensus 377 --------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 444 (558)
.+...+.+.|++++|...++++.+.... +. ..+..+...+...|++++|...++++.+.. +.+..+
T Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 308 (359)
T 3ieg_A 231 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNA 308 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHH
Confidence 2355677778888888888877765321 22 223445667777888888888888877753 446777
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008633 445 YKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGL 487 (558)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 487 (558)
+..+...+...|++++|.+.|+++.+.. +-+...+..+..+.
T Consensus 309 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 309 LKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 8888888888888888888888888753 33455555555444
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=6.2e-18 Score=175.62 Aligned_cols=351 Identities=14% Similarity=0.100 Sum_probs=267.1
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 008633 144 EAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGR 223 (558)
Q Consensus 144 ~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~ 223 (558)
+.|...++-+.... +.+..+|..+...+...|++++|...|+.+.. .|+. ....+..+...+....|...++.
T Consensus 76 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~a~~~~~~ 148 (537)
T 3fp2_A 76 EKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFDLSVLSL---NGDF--DGASIEPMLERNLNKQAMKVLNE 148 (537)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---CCCC--ChHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666555432 45788999999999999999999999974422 2222 22234455566667788888888
Q ss_pred HHhCC------CCCCHH------------------------------HHHHHHHHHHh--------cCCHhHHHHHHHHh
Q 008633 224 LEDFG------LKFDAE------------------------------SLNVVLWCLCQ--------RLHVGAASSLFNSM 259 (558)
Q Consensus 224 ~~~~g------~~~~~~------------------------------~~~~ll~~~~~--------~~~~~~A~~~~~~m 259 (558)
+.... ..|+.. ....+...+.. .|++++|..+|+++
T Consensus 149 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~ 228 (537)
T 3fp2_A 149 NLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL 228 (537)
T ss_dssp HCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 76531 112211 12222222211 24789999999999
Q ss_pred hcCCCCChh-------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008633 260 KGKVLFNVM-------TYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKG 332 (558)
Q Consensus 260 ~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 332 (558)
....|.+.. +|..+...+...|++++|...+++..+. .|+...+..+...+...|++++|.+.++++.+..
T Consensus 229 l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 306 (537)
T 3fp2_A 229 LSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN 306 (537)
T ss_dssp HC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC
T ss_pred HHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Confidence 876665543 5777778889999999999999999986 4668888899999999999999999999998875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 008633 333 CGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITS 412 (558)
Q Consensus 333 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 412 (558)
.. +..++..+...|...|++++|.+.|+++.+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..
T Consensus 307 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 383 (537)
T 3fp2_A 307 PE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTF 383 (537)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHH
T ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 44 78899999999999999999999999998764 4457889999999999999999999999998864 344567888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHcC----------CChhHHHHHHHHHHHCCCCCCH
Q 008633 413 FLEPLCSYGPPHAAMMMYKKARKVG-----CKLSLTAYKLLLRRLSGF----------GKCGMLLDLWHEMQESGYPSDG 477 (558)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~ 477 (558)
+...+...|++++|...++++.+.. .......+..+...+... |++++|...++++.+.. +.+.
T Consensus 384 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~ 462 (537)
T 3fp2_A 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSE 462 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCH
Confidence 8899999999999999999987642 112233344555667777 99999999999998764 4577
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 008633 478 EIYEYVIAGLCNIGQLENAVLVMEESLRKG 507 (558)
Q Consensus 478 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 507 (558)
..+..+...+...|++++|...++++++..
T Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 463 QAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 899999999999999999999999999763
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=5.7e-16 Score=158.93 Aligned_cols=355 Identities=11% Similarity=0.052 Sum_probs=291.9
Q ss_pred CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhCCCCCC
Q 008633 161 KDVKSYNVIVKALGR----RKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIR----AGQVYKAIQMLGRLEDFGLKFD 232 (558)
Q Consensus 161 ~~~~~~~~li~~~~~----~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~ 232 (558)
.+..++..+...|.. .+++++|+..|++..+.| +...+..+...|.. .++.++|.+.|++..+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 466777778877877 889999999999988875 67788888888888 899999999999988865 6
Q ss_pred HHHHHHHHHHHHh----cCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 008633 233 AESLNVVLWCLCQ----RLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSK----LGQVVEMERVLKEIVAEGFSPDSLT 304 (558)
Q Consensus 233 ~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t 304 (558)
...+..|...|.. .+++++|...|++.... -+...+..|...|.. .+++++|.+.|++..+.| +...
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 6777788888888 78999999999987543 267788888888887 789999999999988875 6777
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 008633 305 FSFLIEGLGR----AGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYIS----VGDFDECMKYYKGMSSYNCEPNMDTYT 376 (558)
Q Consensus 305 ~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~ 376 (558)
+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .+++++|.++|++..+.| +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 8888888887 889999999999988875 56677888888886 789999999999988754 456677
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHHHHH
Q 008633 377 RLISGLLK----SRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSY-----GPPHAAMMMYKKARKVGCKLSLTAYKL 447 (558)
Q Consensus 377 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~ 447 (558)
.+...|.. .++.++|+..|++..+.| +...+..+...|... ++.++|...+++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 77777777 889999999999988765 445556666667666 89999999999988875 4567777
Q ss_pred HHHHHHcCC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008633 448 LLRRLSGFG---KCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCN----IGQLENAVLVMEESLRKGFCPSRLVYSKLSN 520 (558)
Q Consensus 448 li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 520 (558)
+...|...| +.++|++.|++..+.| +...+..+...|.. .+++++|...+++..+.| +...+..|..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777766 7889999999998864 67788888888888 889999999999998875 4778888999
Q ss_pred HHHh----cCCHHHHHHHHHHHHHhcCC
Q 008633 521 KLLA----SNKLESAYNLFRKIKIARQN 544 (558)
Q Consensus 521 ~~~~----~g~~~~A~~~~~~m~~~~~~ 544 (558)
.|.+ .++.++|.+.+++..+.+..
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 9988 89999999999999887744
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=2e-18 Score=167.09 Aligned_cols=292 Identities=12% Similarity=-0.009 Sum_probs=185.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008633 232 DAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEG 311 (558)
Q Consensus 232 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 311 (558)
+...+..+...+...|++++|.++|+++....|.+...+..++..+...|++++|..+++++.+.. +.+...+..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 344455555555556666666666666554444455555556666666666666666666666542 2244555556666
Q ss_pred HHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 312 LGRAG-RIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVAD 390 (558)
Q Consensus 312 ~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 390 (558)
+...| ++++|.+.++++.+.... +...|..+..++...|++++|.+.|+++.+.. +.+...+..+...|...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 66666 666666666666655332 44556666666666666666666666666543 2334555556666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHcCCChhHHH
Q 008633 391 ALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVG--------CKLSLTAYKLLLRRLSGFGKCGMLL 462 (558)
Q Consensus 391 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~ 462 (558)
|...+++..+.. +.+...+..+...+...|++++|...++++.+.. .+....++..+...+...|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 766666666543 3345556666666666777777777766665531 1333567778888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHH
Q 008633 463 DLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKL-LASNKLE 529 (558)
Q Consensus 463 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~~~ 529 (558)
..+++..+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+..++ ...|+.+
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 8888887653 4466788888888888888888888888887653 23467777777777 4555543
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=4.4e-18 Score=164.74 Aligned_cols=292 Identities=11% Similarity=0.012 Sum_probs=185.7
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHH
Q 008633 196 PDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVIS 275 (558)
Q Consensus 196 ~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~ 275 (558)
.+...+..+...+...|++++|+++++++.+.. +.+...+..++.++...|++++|..+++++....+.+...|..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 344455556666666666666666666666543 2234455555566666666666666666665555556666666666
Q ss_pred HHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 008633 276 GWSKLG-QVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFD 354 (558)
Q Consensus 276 ~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 354 (558)
.+...| ++++|...|++..+.. +.+...|..+...+...|++++|.+.++++.+.... +...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 666666 6667777766666543 223455666666666777777777777766665433 3445555667777777777
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCChhHH
Q 008633 355 ECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRG--------IVPSTGTITSFLEPLCSYGPPHAA 426 (558)
Q Consensus 355 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~ll~~~~~~g~~~~a 426 (558)
+|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.. .......+..+...+...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 7777777776553 4455667777777777777777777777665431 122345666677777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCH
Q 008633 427 MMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGL-CNIGQL 493 (558)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~ 493 (558)
...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++ ...|+.
T Consensus 256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 77777776654 3356677777777888888888888888777653 33566666666666 344543
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=6.1e-18 Score=166.60 Aligned_cols=288 Identities=11% Similarity=-0.007 Sum_probs=207.5
Q ss_pred cCCHhHHHH-HHHHhhcCCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 246 RLHVGAASS-LFNSMKGKVLF----NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDD 320 (558)
Q Consensus 246 ~~~~~~A~~-~~~~m~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 320 (558)
.|++++|.+ .|++.....+. +...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 456666666 66644332111 34556677777777777777777777777653 3356667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH---------------HHHHHHhc
Q 008633 321 AIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTR---------------LISGLLKS 385 (558)
Q Consensus 321 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~---------------li~~~~~~ 385 (558)
|.+.++++.+.... +..++..+..+|...|++++|.+.++++.+.. +.+...+.. .+..+...
T Consensus 117 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 77777777766433 66677777777777777777777777777653 222222211 23334488
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 008633 386 RKVADALEVFEEMLDRGIVP-STGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDL 464 (558)
Q Consensus 386 g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 464 (558)
|++++|...++++.+..... +..++..+...+...|++++|...++++.+.. +.+..+|..+...+...|++++|+..
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999988764221 47788888888999999999999999988764 44678899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC----------CHHHHHHHHHHHHhcCCHHHHHHH
Q 008633 465 WHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCP----------SRLVYSKLSNKLLASNKLESAYNL 534 (558)
Q Consensus 465 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----------~~~~~~~l~~~~~~~g~~~~A~~~ 534 (558)
++++.+.. +.+...+..+...+.+.|++++|...++++++..... ...+|..+..+|...|++++|..+
T Consensus 274 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 274 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 99998754 4567889999999999999999999999998652111 168899999999999999999988
Q ss_pred HHHH
Q 008633 535 FRKI 538 (558)
Q Consensus 535 ~~~m 538 (558)
+++-
T Consensus 353 ~~~~ 356 (368)
T 1fch_A 353 DARD 356 (368)
T ss_dssp HTTC
T ss_pred HHHH
Confidence 7643
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=3.8e-18 Score=168.12 Aligned_cols=289 Identities=11% Similarity=0.011 Sum_probs=203.5
Q ss_pred hCCHHHHHH-HHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 008633 211 AGQVYKAIQ-MLGRLEDFGLK---FDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEM 286 (558)
Q Consensus 211 ~g~~~~A~~-~~~~~~~~g~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A 286 (558)
.|++++|++ .+++..+.... .+...+..+...+.+.|++++|...|+++....|.+..+|..+...+.+.|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 466667766 66655433211 12345666677777777777777777777666666677777777777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHhcC
Q 008633 287 ERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNA---------------VISNYISVG 351 (558)
Q Consensus 287 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~---------------li~~~~~~g 351 (558)
...|+++.+.. +.+..++..+...+...|++++|.+.++++.+.... +...+.. .+..+...|
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 77777777653 335667777777777777777777777777665432 1111110 133333888
Q ss_pred CHHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 008633 352 DFDECMKYYKGMSSYNCEP--NMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMM 429 (558)
Q Consensus 352 ~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 429 (558)
++++|.++|+++.+.. +. +..++..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 196 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 196 LFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999888753 22 47888888999999999999999999888753 34567888888888899999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHHhcCCHhHHHHH
Q 008633 430 YKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYP----------SDGEIYEYVIAGLCNIGQLENAVLV 499 (558)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------p~~~~~~~li~~~~~~g~~~~A~~~ 499 (558)
++++.+.. +.+..++..+..+|.+.|++++|...++++.+.... ....+|..+..++...|+.++|..+
T Consensus 274 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 274 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 99888764 456788888999999999999999999888753211 1267899999999999999999988
Q ss_pred HHHHH
Q 008633 500 MEESL 504 (558)
Q Consensus 500 ~~~m~ 504 (558)
+++.+
T Consensus 353 ~~~~l 357 (368)
T 1fch_A 353 DARDL 357 (368)
T ss_dssp HTTCH
T ss_pred HHHHH
Confidence 87443
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=2.9e-18 Score=168.86 Aligned_cols=266 Identities=14% Similarity=0.022 Sum_probs=209.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008633 266 NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVIS 345 (558)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 345 (558)
+...|..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|.+.|+++.+.... +..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 45568888888888888999988888888764 346778888888888889999999988888877533 6778888888
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHH
Q 008633 346 NYISVGDFDECMKYYKGMSSYNCEPN-----------MDTYTRLISGLLKSRKVADALEVFEEMLDRGIV-PSTGTITSF 413 (558)
Q Consensus 346 ~~~~~g~~~~A~~~~~~m~~~~~~p~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l 413 (558)
+|...|++++|.+.|+++.+.. |+ ...+..+...+...|++++|...++++.+.... .+..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999998887642 22 223344578888899999999999999886422 157788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008633 414 LEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQL 493 (558)
Q Consensus 414 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 493 (558)
...+...|++++|...++++.+.. +.+..+|..+..+|...|++++|+..++++.+.. +.+..+|..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 899999999999999999988864 4568899999999999999999999999998763 44688999999999999999
Q ss_pred hHHHHHHHHHHhCCC---C--------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 494 ENAVLVMEESLRKGF---C--------PSRLVYSKLSNKLLASNKLESAYNLFRK 537 (558)
Q Consensus 494 ~~A~~~~~~m~~~g~---~--------p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 537 (558)
++|...++++++... . .+..+|..+..++...|+.+.+.++.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999986421 0 1257899999999999999998887654
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=2.3e-14 Score=146.86 Aligned_cols=365 Identities=11% Similarity=-0.008 Sum_probs=296.1
Q ss_pred chHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----hCC
Q 008633 142 SGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGR----RKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIR----AGQ 213 (558)
Q Consensus 142 ~~~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~----~g~ 213 (558)
+.+.|..+|+-+... -+..++..|...|.. .+++++|...|++..+.| +...+..+...|.. .++
T Consensus 58 ~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 130 (490)
T 2xm6_A 58 DLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVD 130 (490)
T ss_dssp CHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 345666666666554 367888899999988 899999999999999876 67888888888888 789
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHh----cCCHHH
Q 008633 214 VYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQ----RLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSK----LGQVVE 285 (558)
Q Consensus 214 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~~~ 285 (558)
+++|++.|++..+.| +...+..|...|.. .++.++|.+.|++.... .+..++..+...|.. .++.++
T Consensus 131 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 131 KAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHH
Confidence 999999999999876 67788888888887 78999999999988654 378889999999998 899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 008633 286 MERVLKEIVAEGFSPDSLTFSFLIEGLGR----AGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYIS----VGDFDECM 357 (558)
Q Consensus 286 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~ 357 (558)
|.++|++..+.| +...+..+...|.. .+++++|.++|++..+.| +...+..+..+|.. .++.++|.
T Consensus 206 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~ 279 (490)
T 2xm6_A 206 SAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKAL 279 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHH
Confidence 999999999875 56777778888876 789999999999998875 56677788888888 89999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHH
Q 008633 358 KYYKGMSSYNCEPNMDTYTRLISGLLKS-----RKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYG---PPHAAMMM 429 (558)
Q Consensus 358 ~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~ 429 (558)
++|++..+.| +...+..+...|... +++++|+..+++..+.| +...+..+...|...| +.++|.++
T Consensus 280 ~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~ 353 (490)
T 2xm6_A 280 EWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEW 353 (490)
T ss_dssp HHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence 9999998765 566777888888887 89999999999999875 4455666666666656 78999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHH
Q 008633 430 YKKARKVGCKLSLTAYKLLLRRLSG----FGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCN----IGQLENAVLVME 501 (558)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~ 501 (558)
+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.+ .++.++|...|+
T Consensus 354 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 427 (490)
T 2xm6_A 354 FRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFD 427 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99999875 67888888888988 899999999999999876 57788889999988 899999999999
Q ss_pred HHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 502 ESLRKGFC-P-SRLVYSKLSNKLLASNKLESAYNLFRKI 538 (558)
Q Consensus 502 ~m~~~g~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 538 (558)
++.+.+.. | +......+...+.. +.+.|.+...++
T Consensus 428 ~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~ 464 (490)
T 2xm6_A 428 TASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQY 464 (490)
T ss_dssp HHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHH
T ss_pred HHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHH
Confidence 99988633 2 33444444443332 334444433333
No 22
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=4.1e-19 Score=185.53 Aligned_cols=120 Identities=13% Similarity=0.052 Sum_probs=98.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 008633 266 NVMTYNIVISGWSKLGQVVEMERVLKEIVA---EGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNA 342 (558)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 342 (558)
-..|||+||++||+.|++++|.++|++|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456888888888888888888888877654 47888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCC-HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc
Q 008633 343 VISNYISVGD-FDECMKYYKGMSSYNCEPNMDTYTRLISGLLKS 385 (558)
Q Consensus 343 li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 385 (558)
||+++|+.|+ .++|.++|++|.+.|+.||..+|++++.+..+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 8888888887 467888888888888888888888887665554
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=9.6e-18 Score=165.17 Aligned_cols=265 Identities=9% Similarity=-0.031 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008633 234 ESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLG 313 (558)
Q Consensus 234 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 313 (558)
..+..+...+.+.|++++|...|+++....|.+..+|..+...+.+.|++++|...|+++.+.. +.+..++..+...+.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3455666666666666666666666655555566666666666666666766766666666543 224566666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC--CHHHHHHHHHHH
Q 008633 314 RAGRIDDAIEVFDTMKEKGCG---------PDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEP--NMDTYTRLISGL 382 (558)
Q Consensus 314 ~~g~~~~a~~~~~~m~~~g~~---------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~ 382 (558)
..|++++|.+.++++.+.... .....+..+...+...|++++|.++|+++.+.. +. +..+|..+...|
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHH
Confidence 667777777666666554211 012234445777788888888888888887653 22 577788888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHH
Q 008633 383 LKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLL 462 (558)
Q Consensus 383 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 462 (558)
...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+..+|...|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 88888888888888877753 3456777788888888888888888888887754 345777888888888888888888
Q ss_pred HHHHHHHHCC---C--------CCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 008633 463 DLWHEMQESG---Y--------PSDGEIYEYVIAGLCNIGQLENAVLVMEE 502 (558)
Q Consensus 463 ~~~~~m~~~~---~--------~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 502 (558)
..|+++.+.. . ..+..+|..+..++...|+.+.|..+.++
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8888876521 0 11357899999999999999988877664
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=7.9e-15 Score=151.95 Aligned_cols=388 Identities=11% Similarity=0.055 Sum_probs=259.4
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHhCCHHHHHH---
Q 008633 144 EAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSF-IRAGQVYKAIQ--- 219 (558)
Q Consensus 144 ~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~-~~~g~~~~A~~--- 219 (558)
+.+...|+-+... .+.+...|...+..+.+.|++++|..+|+++.... |+...|...+... ...|+.+.|.+
T Consensus 29 ~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~ 104 (530)
T 2ooe_A 29 DKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMA 104 (530)
T ss_dssp HHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHH
T ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHH
Confidence 4555555555543 24566778888888888888888888888877653 5766666666533 34466555544
Q ss_pred -HHHHHHh-CCCCC-CHHHHHHHHHHHHh---------cCCHhHHHHHHHHhhcCCCCC--hhhHHHHHHHHH-------
Q 008633 220 -MLGRLED-FGLKF-DAESLNVVLWCLCQ---------RLHVGAASSLFNSMKGKVLFN--VMTYNIVISGWS------- 278 (558)
Q Consensus 220 -~~~~~~~-~g~~~-~~~~~~~ll~~~~~---------~~~~~~A~~~~~~m~~~~~~~--~~~~~~li~~~~------- 278 (558)
+|+...+ .|..| +...|...+....+ .|+++.|..+|++... .|.+ ...|........
T Consensus 105 ~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~ 183 (530)
T 2ooe_A 105 QAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLA 183 (530)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHH
Confidence 6665543 34333 45666666666554 5777888888887765 3222 123333222111
Q ss_pred ------hcCCHHHHHHHHHHHHH------cC---CCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHH
Q 008633 279 ------KLGQVVEMERVLKEIVA------EG---FSPD--------SLTFSFLIEGLGRA----GRI----DDAIEVFDT 327 (558)
Q Consensus 279 ------~~g~~~~A~~~~~~m~~------~g---~~p~--------~~t~~~ll~~~~~~----g~~----~~a~~~~~~ 327 (558)
+.+++..|..++.++.. .. +.|+ ...|...+...... ++. .++..+|++
T Consensus 184 ~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~ 263 (530)
T 2ooe_A 184 KKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQ 263 (530)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHH
Confidence 12345566665555321 11 2333 13444444332221 222 367778888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 328 MKEKGCGPDTNAYNAVISNYIS-------VGDFD-------ECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALE 393 (558)
Q Consensus 328 m~~~g~~p~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 393 (558)
..... +-+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.|++++|..
T Consensus 264 al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~ 342 (530)
T 2ooe_A 264 CLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHS 342 (530)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHH
Confidence 87763 3367788888888775 68877 899999998863234568889999999999999999999
Q ss_pred HHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCChhHHHHHHHHHHH
Q 008633 394 VFEEMLDRGIVPS--TGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRR-LSGFGKCGMLLDLWHEMQE 470 (558)
Q Consensus 394 ~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~ 470 (558)
+|+++.+. .|+ ...|..++..+.+.|+.++|..+|++..+.. +.+...|...... +...|+.++|..+|+...+
T Consensus 343 ~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~ 419 (530)
T 2ooe_A 343 IYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK 419 (530)
T ss_dssp HHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 99999885 444 2478888887888899999999999998753 2233333332222 3468999999999998887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 471 SGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKG-FCPS--RLVYSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 471 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
.. +.+...|..++..+.+.|+.++|..+|++++..+ ..|+ ...|...+......|+.+.+..+.+++.+.
T Consensus 420 ~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 420 KY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 53 4467889999999999999999999999998863 2232 458888888888899999999999888754
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=3.4e-18 Score=165.90 Aligned_cols=287 Identities=10% Similarity=0.062 Sum_probs=132.8
Q ss_pred HHHHHHcCCCchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Q 008633 132 VGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRA 211 (558)
Q Consensus 132 v~~~l~~~~~~~~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~ 211 (558)
+..++...+.- +.|..|++-. ++..+|..+..++.+.|++++|++.|.+. +|..+|..++.++...
T Consensus 9 ~~~ll~~~~~l-d~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~ 74 (449)
T 1b89_A 9 VQVLIEHIGNL-DRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTS 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCH-HHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhC
Confidence 33444433322 4566676533 33359999999999999999999999653 5788999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 008633 212 GQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLK 291 (558)
Q Consensus 212 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 291 (558)
|++++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|..+|.
T Consensus 75 g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 75 GNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp ------------------------------------CHHHHTTTTT------CC----------------CTTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999988877764 4567889999999999999999998884 3677899999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 008633 292 EIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPN 371 (558)
Q Consensus 292 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 371 (558)
.+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .+
T Consensus 147 ~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ 206 (449)
T 1b89_A 147 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VH 206 (449)
T ss_dssp HT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TC
T ss_pred Hh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hC
Confidence 77 37899999999999999999999998 278999999999999999999966655433 33
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CChhHHHHHHHHHHHcCCCC------CHH
Q 008633 372 MDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSY--GPPHAAMMMYKKARKVGCKL------SLT 443 (558)
Q Consensus 372 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~ 443 (558)
..-...++..|.+.|++++|+.+++...... .-....|+-+.-.|++. ++..+.++.|.. +.++++ +..
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAH 283 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTT
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHH
Confidence 3445579999999999999999999988665 55567777777667664 333444443321 122222 345
Q ss_pred HHHHHHHHHHcCCChhHHHH
Q 008633 444 AYKLLLRRLSGFGKCGMLLD 463 (558)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~ 463 (558)
.|..+.-.|.+.++++.|..
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhhchHHHHHH
Confidence 68888888999999998865
No 26
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.77 E-value=7.2e-19 Score=183.66 Aligned_cols=153 Identities=19% Similarity=0.263 Sum_probs=126.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhc----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 008633 229 LKFDAESLNVVLWCLCQRLHVGAASSLFNSMKG----KVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLT 304 (558)
Q Consensus 229 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 304 (558)
...-..+||+||++||+.|++++|.++|+.|.+ +..||++|||+||.+||+.|++++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 344567999999999999999999999988753 4889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC------HHHHHH
Q 008633 305 FSFLIEGLGRAGR-IDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPN------MDTYTR 377 (558)
Q Consensus 305 ~~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~ 377 (558)
|+++|+++|+.|+ .++|.++|++|.+.|+.||..+|++++..+.+. .+++..+++ ..+..|+ +.+...
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~L 277 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKL 277 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHH
Confidence 9999999999998 578999999999999999999999999877665 334444444 2333443 344445
Q ss_pred HHHHHHhcC
Q 008633 378 LISGLLKSR 386 (558)
Q Consensus 378 li~~~~~~g 386 (558)
|.+.|.+.+
T Consensus 278 L~dl~s~d~ 286 (1134)
T 3spa_A 278 LRDVYAKDG 286 (1134)
T ss_dssp THHHHCCCS
T ss_pred HHHHHccCC
Confidence 555555544
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=1.9e-16 Score=152.94 Aligned_cols=265 Identities=9% Similarity=-0.021 Sum_probs=189.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008633 268 MTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNY 347 (558)
Q Consensus 268 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 347 (558)
..+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|.+.++++.+.... +..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHH
Confidence 345555666666666666666666666543 224555666666666666666666666666655322 555666666666
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 008633 348 ISVGDFDECMKYYKGMSSYNCEPNMDTYTRL--------------IS-GLLKSRKVADALEVFEEMLDRGIVPSTGTITS 412 (558)
Q Consensus 348 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 412 (558)
...|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|...++++.+.. +.+...+..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 77777777777776666542 1122222222 22 3667788888888888887764 335677788
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008633 413 FLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQ 492 (558)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 492 (558)
+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...|..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcc
Confidence 8888888899999999988887764 4467888899999999999999999999988754 4467889999999999999
Q ss_pred HhHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 493 LENAVLVMEESLRKGFCP-----------SRLVYSKLSNKLLASNKLESAYNLFRKI 538 (558)
Q Consensus 493 ~~~A~~~~~~m~~~g~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 538 (558)
+++|...++++.+..... +..++..+..++.+.|++++|.+++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999998753211 3778999999999999999999998754
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=6.6e-16 Score=149.11 Aligned_cols=234 Identities=9% Similarity=-0.067 Sum_probs=140.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008633 162 DVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLW 241 (558)
Q Consensus 162 ~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 241 (558)
+...|..+...+...|++++|..+|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 33456677778888888888888888887764 3467788888888888888888888888887754 336677777888
Q ss_pred HHHhcCCHhHHHHHHHHhhcCCCCChhhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008633 242 CLCQRLHVGAASSLFNSMKGKVLFNVMTYNIV--------------IS-GWSKLGQVVEMERVLKEIVAEGFSPDSLTFS 306 (558)
Q Consensus 242 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 306 (558)
.+...|++++|.+.++++....+.+...+..+ .. .+...|++++|.+.++++.+.. +.+...+.
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 88888888888888887766544444444443 22 2444555555555555555442 22444555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC
Q 008633 307 FLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSR 386 (558)
Q Consensus 307 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 386 (558)
.+...+...|++++|.+.++++.+.... +..++..+...|...|++++|.+.|+++.+.. +.+..+|..+...+...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 5555555555555555555555544322 34455555555555555555555555554432 223444555555555555
Q ss_pred CHHHHHHHHHHHHH
Q 008633 387 KVADALEVFEEMLD 400 (558)
Q Consensus 387 ~~~~A~~~~~~m~~ 400 (558)
++++|...++++.+
T Consensus 255 ~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 255 QYDLAAKQLVRAIY 268 (327)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 55555555555443
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=5.7e-15 Score=150.67 Aligned_cols=375 Identities=9% Similarity=-0.049 Sum_probs=252.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhC----
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKE-----G---VNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDF---- 227 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~-----g---~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~---- 227 (558)
......||.|..++...|++++|++.|++..+. + -.....+|..+...|...|++++|...++++.+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344678999999999999999999999887542 1 1234678999999999999999999999887642
Q ss_pred -C-C-CCCHHHHHHHHHHHHhc--CCHhHHHHHHHHhhcCCCCChhhHHHHHHHH---HhcCCHHHHHHHHHHHHHcCCC
Q 008633 228 -G-L-KFDAESLNVVLWCLCQR--LHVGAASSLFNSMKGKVLFNVMTYNIVISGW---SKLGQVVEMERVLKEIVAEGFS 299 (558)
Q Consensus 228 -g-~-~~~~~~~~~ll~~~~~~--~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~ 299 (558)
+ . .....+++.+..++... +++++|.+.|++.....|-+...+..+..++ ...++.++|++.+++..+.. +
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 1 12356677666666654 4689999999998776666777777666554 45677888999999888754 2
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH
Q 008633 300 PDSLTFSFLIEGLGR----AGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTY 375 (558)
Q Consensus 300 p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 375 (558)
.+...+..+...+.. .++.++|.+.+++....... +..++..+...|...|++++|.+.+++..+.. +-+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 355666666555544 46788999999998887544 77889999999999999999999999998763 4456667
Q ss_pred HHHHHHHHhc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 008633 376 TRLISGLLKS-------------------RKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKV 436 (558)
Q Consensus 376 ~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (558)
..+..+|... +.+++|...+++..+.. +.+...+..+...+...|++++|+..|+++.+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 7666655432 23567777787777653 233455677788889999999999999998886
Q ss_pred CCCCCHH--HHHHHHH-HHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH
Q 008633 437 GCKLSLT--AYKLLLR-RLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRL 513 (558)
Q Consensus 437 ~~~~~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 513 (558)
...+... .+..+.. .+...|+.++|+..|++..+. .|+....... .+.+.+++++.++.. +.+..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~l~~~~~~~l~~~-p~~~~ 431 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDKLQKIAKMRLSKN-GADSE 431 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHHHHHHHHHHHHHC-C-CTT
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHHHHHHHHHHHHhC-CCCHH
Confidence 5433221 2222222 245678999999999998875 4444332222 234455666666543 34578
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchhhhh
Q 008633 514 VYSKLSNKLLASNKLESAYNLFRKIKIARQNDYARRL 550 (558)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 550 (558)
+|..|..+|...|++++|.+.+++..+.+........
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHHHHHHHHHHHHHCC---------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 9999999999999999999999999876544333333
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=1.8e-17 Score=160.84 Aligned_cols=287 Identities=11% Similarity=0.116 Sum_probs=105.4
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 008633 175 RRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASS 254 (558)
Q Consensus 175 ~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~ 254 (558)
+.|+.++|.+.++++ ++..+|..++.++.+.|++++|++.|.+. +|...|..++..+...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 456677777777766 23357777777777777777777777542 355677777777777777777777
Q ss_pred HHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 008633 255 LFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCG 334 (558)
Q Consensus 255 ~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 334 (558)
.++..... .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...|..+
T Consensus 83 yl~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 83 YLQMARKK-ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 66555443 3345667777777777777777776664 256667777777777777777777777755
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008633 335 PDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFL 414 (558)
Q Consensus 335 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 414 (558)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|+..|+++.|...... +.....-...++
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv 214 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELI 214 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHH
Confidence 25667777777777777777777766 1566777777777777777777544433 222333344566
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH-CCCCC------CHHHHHHHHHHH
Q 008633 415 EPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQE-SGYPS------DGEIYEYVIAGL 487 (558)
Q Consensus 415 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p------~~~~~~~li~~~ 487 (558)
..|.+.|.+++|..+++...... +-....|+.+.-+|++. ++++.++.++.... .+++| +...|.-++..|
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777666544 44566666666666655 23333333332221 22232 344566666666
Q ss_pred HhcCCHhHHHHHHHHHHhC
Q 008633 488 CNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 488 ~~~g~~~~A~~~~~~m~~~ 506 (558)
.+.++++.|.. .|+++
T Consensus 293 ~~~~e~d~A~~---tm~~h 308 (449)
T 1b89_A 293 DKYEEYDNAII---TMMNH 308 (449)
T ss_dssp HHTTCHHHHHH---HHHHS
T ss_pred HhhchHHHHHH---HHHhC
Confidence 66677766654 45554
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=2.3e-15 Score=142.71 Aligned_cols=270 Identities=11% Similarity=0.056 Sum_probs=151.4
Q ss_pred hcCCHhHHHHHHHHhhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 245 QRLHVGAASSLFNSMKGKVLFN-VMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIE 323 (558)
Q Consensus 245 ~~~~~~~A~~~~~~m~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 323 (558)
..|++..|+..++......|.+ ......+.++|...|++++|+..++. .-.|+..++..+...+...++.++|.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 3455555555555443322111 12334445555556666555554433 123444555555555666666666666
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008633 324 VFDTMKEKGCGP-DTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRG 402 (558)
Q Consensus 324 ~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 402 (558)
.++++...+..| +...+..+..+|...|++++|++.+++ +.+...+..++..|.+.|++++|...++++.+..
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 666665554323 344455555666666666666666655 2455566666666666666666666666666542
Q ss_pred CCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHH
Q 008633 403 IVPSTGTI---TSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEI 479 (558)
Q Consensus 403 ~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 479 (558)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...+++..+.. +-+..+
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~ 236 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPET 236 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 332211 11222233346677777777777665 24566777777777777777777777777776643 446667
Q ss_pred HHHHHHHHHhcCCHhH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 480 YEYVIAGLCNIGQLEN-AVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYN 533 (558)
Q Consensus 480 ~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 533 (558)
+..++..+...|+.++ +.++++++++. .|+... +.+...+.+.++++..
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHHH
Confidence 7777777777777765 45777777754 354222 2233444445544443
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=1.6e-15 Score=143.87 Aligned_cols=252 Identities=12% Similarity=0.058 Sum_probs=149.2
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 008633 207 SFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEM 286 (558)
Q Consensus 207 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A 286 (558)
-....|++..|+...+................+..+|...|+++.|...++. ..+|+..++..+...+...|+.++|
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 3445566666666665544322111123344455666666666666654433 2444566666666666666667777
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 287 ERVLKEIVAEGFSPD-SLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 287 ~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
++.++++...+..|+ ...+..+...+...|++++|.+.+++ +.+...+..++..|.+.|++++|.+.|+++.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 777776666554343 34445555666666777777766665 34566666666777777777777777777665
Q ss_pred CCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 008633 366 YNCEPNMDTY---TRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSL 442 (558)
Q Consensus 366 ~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 442 (558)
.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++...|++++|...++++.+.. +-+.
T Consensus 159 ~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~ 234 (291)
T 3mkr_A 159 QD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHP 234 (291)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred hC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 42 332211 11222333346777777777777665 24455666666666777777777777777766654 3456
Q ss_pred HHHHHHHHHHHcCCChhH-HHHHHHHHHHC
Q 008633 443 TAYKLLLRRLSGFGKCGM-LLDLWHEMQES 471 (558)
Q Consensus 443 ~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 471 (558)
.++..++..+...|+.++ +.++++++.+.
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 666667777777777654 45676666654
No 33
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=4.3e-13 Score=138.90 Aligned_cols=384 Identities=10% Similarity=0.054 Sum_probs=280.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVV 239 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 239 (558)
+-|..+|..++. +.+.|++++|..+|+++.+. .+-+...|...+..+.+.|++++|.++|+++.+.. |+...|...
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 358899999998 47899999999999999986 35578899999999999999999999999999864 677788777
Q ss_pred HHHH-HhcCCHhHHHH----HHHHhhcC---CCCChhhHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCH
Q 008633 240 LWCL-CQRLHVGAASS----LFNSMKGK---VLFNVMTYNIVISGWSK---------LGQVVEMERVLKEIVAEGFSPDS 302 (558)
Q Consensus 240 l~~~-~~~~~~~~A~~----~~~~m~~~---~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~ 302 (558)
+... ...|+.+.|.+ +|++.... .+.+...|...+....+ .|++++|..+|++..+.......
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 7533 45677777765 67665432 33467788888887655 68999999999999873111112
Q ss_pred HHHHHHHHHH-------------HhcCCHHHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHHhc--
Q 008633 303 LTFSFLIEGL-------------GRAGRIDDAIEVFDTMK------EKG---CGPD--------TNAYNAVISNYISV-- 350 (558)
Q Consensus 303 ~t~~~ll~~~-------------~~~g~~~~a~~~~~~m~------~~g---~~p~--------~~~~~~li~~~~~~-- 350 (558)
..|....... .+.+++..|..++..+. +.. ++|+ ...|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 3343322211 12456777777776632 221 2443 24555555433322
Q ss_pred --CCH----HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHH
Q 008633 351 --GDF----DECMKYYKGMSSYNCEPNMDTYTRLISGLLK-------SRKVA-------DALEVFEEMLDRGIVPSTGTI 410 (558)
Q Consensus 351 --g~~----~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~~~~p~~~~~ 410 (558)
++. +.|..+|++..... +-+...|...+..+.+ .|+++ +|..++++..+.-.+-+...+
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 232 47788999888753 4567888888888876 68987 899999998863223457788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH
Q 008633 411 TSFLEPLCSYGPPHAAMMMYKKARKVGCKLS-LTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAG-LC 488 (558)
Q Consensus 411 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~ 488 (558)
..++..+...|++++|..+|+++.+.. +.+ ...|..++..+.+.|+.++|.++|++..+.. +.+...|...+.. +.
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHH
Confidence 888888899999999999999999853 223 3588999998999999999999999998753 2233444433322 34
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-Cc-hhhhhh
Q 008633 489 NIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQ-ND-YARRLW 551 (558)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~~-~~~~~~ 551 (558)
..|+.++|..+|+++++.. +-+...|..++..+.+.|+.++|..+|++...... .| ....+|
T Consensus 403 ~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw 466 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 466 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHH
T ss_pred HcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHH
Confidence 6899999999999998763 23588999999999999999999999999987643 33 234466
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.67 E-value=1.6e-12 Score=140.64 Aligned_cols=320 Identities=15% Similarity=0.187 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008633 163 VKSYNVIVKALGRRKFFDFMCNVLSDMAKEGV--NPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVL 240 (558)
Q Consensus 163 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~--~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 240 (558)
..--...+++|...|.+.+|++++++..-.+- .-+...-+.++.+..+. +..+..+...+..+.. ..-+.
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eIA 1056 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APDIA 1056 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHHH
Confidence 33345677888889999999999998874421 11233344455444444 3444444444433211 12244
Q ss_pred HHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 241 WCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDD 320 (558)
Q Consensus 241 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 320 (558)
..+...|.+++|..+|++... .....+.++. ..|++++|.++.++. -+..+|..+..++...|++++
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~~----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFDV----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcCC----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHH
Confidence 455555666666666655421 1222222222 345555555555433 124455555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 321 AIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 321 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
|.+.|.+. -|...|..++.++.+.|++++|.+++....+.. ++....+.++.+|++.+++++..... .
T Consensus 1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 55555432 144455555555555555555555555544432 22222223555555555555322221 1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHH
Q 008633 401 RGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIY 480 (558)
Q Consensus 401 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 480 (558)
.++...+..+...|...|++++|..+|..+ ..|..+..+|++.|++++|.+.+++.. +..+|
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aW 1253 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTW 1253 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHH
Confidence 223344444555555555555555555543 245555555555555555555555441 23444
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 481 EYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKI 538 (558)
Q Consensus 481 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 538 (558)
..+-.+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++..
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444444444444443321 1222333444444444444444444444433
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.66 E-value=2.6e-12 Score=138.97 Aligned_cols=263 Identities=13% Similarity=0.142 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 008633 198 LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGW 277 (558)
Q Consensus 198 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~ 277 (558)
..+|..+..++...|++++|++.|.+. -|...|..++.++.+.|++++|.+.|....... ++....+.++.+|
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~-~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-RESYVETELIFAL 1177 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-ccccccHHHHHHH
Confidence 344444444444444444444444332 133344444444444444444444444333221 1111122244444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 278 SKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECM 357 (558)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 357 (558)
++.+++++...+. + .++...|..+...|...|++++|..+|... ..|..+...|++.|++++|.
T Consensus 1178 AKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1178 AKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred HhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHH
Confidence 4444444322221 1 123333334444444444444444444442 23444444444444444444
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 008633 358 KYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVG 437 (558)
Q Consensus 358 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 437 (558)
+.+++.. +..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++......
T Consensus 1242 EaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1242 DGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred HHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 4444432 234444444444444444444443322 22233444455556666666666666665555433
Q ss_pred CCCCHHHHHHHHHHHHcC--CChhHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHhHHH
Q 008633 438 CKLSLTAYKLLLRRLSGF--GKCGMLLDLWHEMQESGYPS------DGEIYEYVIAGLCNIGQLENAV 497 (558)
Q Consensus 438 ~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~li~~~~~~g~~~~A~ 497 (558)
+-....|.-+...|++. ++..++.++|..-. ++++ +...|.-++..|.+.|+++.|.
T Consensus 1311 -raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1311 -RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred -hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 33344444444444443 22333333333211 1111 3445666666666666666665
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.8e-14 Score=131.53 Aligned_cols=223 Identities=13% Similarity=0.140 Sum_probs=116.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCC----HHHHHHH
Q 008633 305 FSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYN--CEPN----MDTYTRL 378 (558)
Q Consensus 305 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~~~~~l 378 (558)
+..+...+...|++++|...++++.+.. .+..++..+..+|...|++++|.+.+++..+.. ..++ ..+|..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3334444444444444444444444433 234444444444444444444444444443321 0001 2444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh
Q 008633 379 ISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKC 458 (558)
Q Consensus 379 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 458 (558)
...+...|++++|...+++..+. .|+. ..+...|++++|...++.+.+.. +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 45555555555555555554442 2221 12333445555555555555432 22344555666666666666
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 459 GMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKI 538 (558)
Q Consensus 459 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 538 (558)
++|...++++.+.. +.+..+|..+...+...|++++|...++++++.. +.+..++..+..++.+.|++++|.+.+++.
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66666666666543 3355666667777777777777777777766543 233666666777777777777777777666
Q ss_pred HHh
Q 008633 539 KIA 541 (558)
Q Consensus 539 ~~~ 541 (558)
.+.
T Consensus 234 ~~~ 236 (258)
T 3uq3_A 234 RTK 236 (258)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 37
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=3.7e-13 Score=137.16 Aligned_cols=332 Identities=11% Similarity=-0.027 Sum_probs=230.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-C-CCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhCCCC
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKE-----G-V-NPDLETLSIVMDSFIRAG--QVYKAIQMLGRLEDFGLK 230 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~-----g-~-~~~~~t~~~li~~~~~~g--~~~~A~~~~~~~~~~g~~ 230 (558)
+....+|+.+..+|...|++++|...+++..+. + . .....++.....++...| ++++|++.|++..+...
T Consensus 91 ~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p- 169 (472)
T 4g1t_A 91 IRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP- 169 (472)
T ss_dssp TTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-
T ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-
Confidence 445789999999999999999999999887642 1 1 123567777666666654 68999999999987642
Q ss_pred CCHHHHHHHHHH---HHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHH
Q 008633 231 FDAESLNVVLWC---LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSK----LGQVVEMERVLKEIVAEGFSPDSL 303 (558)
Q Consensus 231 ~~~~~~~~ll~~---~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ 303 (558)
-+...+..+..+ +...++.++|++.+++.....|.+..++..+...+.. .|++++|.+.+++..... +.+..
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~ 248 (472)
T 4g1t_A 170 KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTD 248 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHH
T ss_pred CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHH
Confidence 245555555554 4456778889999988776666677888777766655 467789999999988764 34677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHhh
Q 008633 304 TFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISV-------------------GDFDECMKYYKGMS 364 (558)
Q Consensus 304 t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-------------------g~~~~A~~~~~~m~ 364 (558)
.+..+...+...|++++|.+.+++..+.... +..++..+..+|... +..++|...|++..
T Consensus 249 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 327 (472)
T 4g1t_A 249 VLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKAD 327 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 8889999999999999999999999887544 677777777666432 23677888888877
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCChhHHHHHHHHHHHcCCCCC
Q 008633 365 SYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTG--TITSFLE-PLCSYGPPHAAMMMYKKARKVGCKLS 441 (558)
Q Consensus 365 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~ 441 (558)
+.. +.+..++..+...|...|++++|++.|++..+....+... .+..+.. .....|+.++|+..|++..+.. |+
T Consensus 328 ~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~ 404 (472)
T 4g1t_A 328 EAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QK 404 (472)
T ss_dssp HHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CC
T ss_pred hcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cc
Confidence 654 4556778899999999999999999999998865433221 1222222 2346799999999999998854 33
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 008633 442 LTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKG 507 (558)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 507 (558)
....... .+.+.++++...+.. +.+..+|..+...|...|++++|++.|+++++.+
T Consensus 405 ~~~~~~~---------~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 405 SREKEKM---------KDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp CHHHHHH---------HHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred cHHHHHH---------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2222211 234455566555543 5577899999999999999999999999999864
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=9.5e-14 Score=128.86 Aligned_cols=226 Identities=13% Similarity=0.070 Sum_probs=160.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HHHH
Q 008633 267 VMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCG--PD----TNAY 340 (558)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--p~----~~~~ 340 (558)
...|..+...+...|++++|...|++..+.. .+...+..+..++...|++++|.+.++++.+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456666667777777777777777776665 56666667777777777777777777766654221 11 4667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008633 341 NAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSY 420 (558)
Q Consensus 341 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 420 (558)
..+...|...|++++|.+.|+++.+. .|+. ..+...|++++|...++++.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 77777777777777777777777764 3442 34556677788888887777652 22345566677777778
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 008633 421 GPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVM 500 (558)
Q Consensus 421 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 500 (558)
|++++|...++++.+.. +.+...+..+...+...|++++|+..+++..+.. +.+...|..+...+...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 88888888888877754 3467778888888888888888888888888754 446778888888899999999999998
Q ss_pred HHHHhC
Q 008633 501 EESLRK 506 (558)
Q Consensus 501 ~~m~~~ 506 (558)
+++++.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888764
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.61 E-value=9.1e-14 Score=125.69 Aligned_cols=209 Identities=16% Similarity=0.050 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVL 240 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 240 (558)
++...|..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|++.+++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 344455555555555555555555555555442 2244555555555555555555555555555433 12344444444
Q ss_pred HHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 241 WCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDD 320 (558)
Q Consensus 241 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 320 (558)
.++.+.+. .. .. .+...|++++|+..+++..+.. +-+...+..+...+...|++++
T Consensus 81 ~~~~~~~~-----------~~---~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~ 136 (217)
T 2pl2_A 81 EAYVALYR-----------QA---ED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDK 136 (217)
T ss_dssp HHHHHHHH-----------TC---SS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhhh-----------hh---hh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHH
Confidence 44444400 00 00 0000055555555555555432 1134445555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 321 AIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEM 398 (558)
Q Consensus 321 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (558)
|...|++..+.. .+...+..+..+|...|++++|...|++..+.. +.+...+..+...+...|++++|+..+++.
T Consensus 137 A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 137 AEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555555554 355555555555555555555555555555432 334455555555555555565555555543
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.61 E-value=9.3e-14 Score=125.62 Aligned_cols=200 Identities=15% Similarity=0.042 Sum_probs=147.4
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008633 231 FDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIE 310 (558)
Q Consensus 231 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 310 (558)
++...+..+...+.+.|++++|...|++.....|.+...|..+...+.+.|++++|+..+++..+.. +-+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3455666666677777777777777777766666677777777777777777777777777777653 224566667777
Q ss_pred HHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 008633 311 GLGRA-----------GRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLI 379 (558)
Q Consensus 311 ~~~~~-----------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 379 (558)
.+... |++++|...+++..+.... +...+..+..+|...|++++|++.|++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 77777 9999999999999988554 77889999999999999999999999999876 7888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008633 380 SGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARK 435 (558)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (558)
.+|...|++++|+..|++..+.. +.+...+..+...+...|++++|+..+++...
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999998864 34567788888889999999999999987654
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=5.2e-13 Score=125.14 Aligned_cols=198 Identities=14% Similarity=0.113 Sum_probs=123.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Q 008633 235 SLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD--SLTFSFLIEGL 312 (558)
Q Consensus 235 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~ 312 (558)
.+......+...|++++|...|++.....|.+...+..+...+...|++++|...+++..+.+..++ ...|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3444556666677777777777766655555666777777777777777777777777766321121 23466677777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 313 GRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADAL 392 (558)
Q Consensus 313 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 392 (558)
...|++++|.+.+++..+.... +..++..+...|...|++++|.+.|++..+.. +.+...|..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777665433 45667777777777777777777777776652 344555665552333445777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHH
Q 008633 393 EVFEEMLDRGIVPSTGTITSFLEPLCSYGP---PHAAMMMYKKARK 435 (558)
Q Consensus 393 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~ 435 (558)
+.|+++.+.. +.+...+..+...+...|+ .++|...++++.+
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 7777776642 2224444445555555555 5556555555544
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=4.9e-12 Score=118.66 Aligned_cols=224 Identities=12% Similarity=0.016 Sum_probs=123.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 008633 266 NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGR----AGRIDDAIEVFDTMKEKGCGPDTNAYN 341 (558)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~ 341 (558)
+..++..+...+...|++++|...|++..+.+ +...+..+...+.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44555556666666666666666666665522 34455555555555 666666666666665554 455555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008633 342 AVISNYIS----VGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLK----SRKVADALEVFEEMLDRGIVPSTGTITSF 413 (558)
Q Consensus 342 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 413 (558)
.+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 56666666 666666666666665543 45555556666665 566666666666655543 33334444
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008633 414 LEPLCS----YGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSG----FGKCGMLLDLWHEMQESGYPSDGEIYEYVIA 485 (558)
Q Consensus 414 l~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 485 (558)
...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|+..+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 444444 555555555555555443 23444445555555 555555555555555543 2344455555
Q ss_pred HHHh----cCCHhHHHHHHHHHHhCC
Q 008633 486 GLCN----IGQLENAVLVMEESLRKG 507 (558)
Q Consensus 486 ~~~~----~g~~~~A~~~~~~m~~~g 507 (558)
.|.+ .+++++|...+++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 5555 555555555555555443
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=5.6e-12 Score=118.27 Aligned_cols=225 Identities=11% Similarity=-0.003 Sum_probs=199.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 008633 301 DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYIS----VGDFDECMKYYKGMSSYNCEPNMDTYT 376 (558)
Q Consensus 301 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~ 376 (558)
+..++..+...+...|++++|.+.|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56677888889999999999999999998843 56788889999999 999999999999999875 788899
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 008633 377 RLISGLLK----SRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCS----YGPPHAAMMMYKKARKVGCKLSLTAYKLL 448 (558)
Q Consensus 377 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 448 (558)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 99999999 999999999999999875 67778888888888 999999999999999876 56778888
Q ss_pred HHHHHc----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008633 449 LRRLSG----FGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCN----IGQLENAVLVMEESLRKGFCPSRLVYSKLSN 520 (558)
Q Consensus 449 i~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 520 (558)
...|.. .+++++|+..+++..+.+ +...+..+...|.. .+++++|+..+++..+.+ | ...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHHHHHHHH
Confidence 888888 899999999999999875 56788889999999 999999999999999875 2 678888999
Q ss_pred HHHh----cCCHHHHHHHHHHHHHhcC
Q 008633 521 KLLA----SNKLESAYNLFRKIKIARQ 543 (558)
Q Consensus 521 ~~~~----~g~~~~A~~~~~~m~~~~~ 543 (558)
.|.. .|++++|.+.+++..+.+.
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 9999 9999999999999987653
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=4.2e-13 Score=131.56 Aligned_cols=218 Identities=9% Similarity=0.079 Sum_probs=138.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008633 266 NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGR-IDDAIEVFDTMKEKGCGPDTNAYNAVI 344 (558)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~li 344 (558)
+...|+.+...+.+.|++++|+..+++..+.. +-+...|+.+..++...|+ +++|+..++++.+.... +...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 56677888888888888888888888887753 2246677777777888886 88888888888777554 677777788
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCh
Q 008633 345 SNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCS-YGPP 423 (558)
Q Consensus 345 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~ 423 (558)
.++...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 88888888888888888777654 4566777777777777777777777777777653 2345566666666666 4443
Q ss_pred hHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHcCC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008633 424 HAA-----MMMYKKARKVGCKLSLTAYKLLLRRLSGFG--KCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNI 490 (558)
Q Consensus 424 ~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 490 (558)
++| +..++++.+.. +-+...|..+...+...| ++++|++.+.++ +. -+.+...+..+...|.+.
T Consensus 252 ~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHH
Confidence 555 24444444432 223444444444444444 344444444444 21 122334444444444443
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=7.1e-13 Score=122.67 Aligned_cols=199 Identities=9% Similarity=-0.062 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008633 163 VKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWC 242 (558)
Q Consensus 163 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 242 (558)
...|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5667777777777777777777777776653 3356666677777777777777777777766543 2245555666666
Q ss_pred HHhcCCHhHHHHHHHHhhc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 243 LCQRLHVGAASSLFNSMKG--KVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDD 320 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 320 (558)
|...|++++|.+.|+++.. ..+.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666554 333344555555555555555555555555555432 1234444445555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 321 AIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 321 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
|...++.+.+... .+...+..+...+.+.|++++|.++++++.+
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555444322 2344444444444455555555555554443
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=3.1e-13 Score=126.69 Aligned_cols=198 Identities=10% Similarity=0.022 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 008633 268 MTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGP--DTNAYNAVIS 345 (558)
Q Consensus 268 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~ 345 (558)
..+......+...|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++++.+.+..+ ....|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 344455566666666666666666666542 1123355555566666666666666666665532111 1233555666
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 008633 346 NYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHA 425 (558)
Q Consensus 346 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 425 (558)
.|...|++++|.+.|++..+.. +.+..+|..+...|...|++++|...+++..+.. +.+...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666665532 2344555556666666666666666665554431 1223333333312223335555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC---hhHHHHHHHHHH
Q 008633 426 AMMMYKKARKVGCKLSLTAYKLLLRRLSGFGK---CGMLLDLWHEMQ 469 (558)
Q Consensus 426 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~ 469 (558)
|...++++.+.. +.+...+..+...+...|+ +++|...+++..
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 555555444432 1223333334444444443 444444444433
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=1.8e-12 Score=119.95 Aligned_cols=209 Identities=11% Similarity=-0.017 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 008633 198 LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGW 277 (558)
Q Consensus 198 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~ 277 (558)
...+..+...+...|++++|.+.++++.+.. +.+..++..+..+|...|++++|.+.|+++....+.+...|..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 5678888899999999999999999998764 346888999999999999999999999998776677889999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008633 278 SKLGQVVEMERVLKEIVAEGFSP-DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDEC 356 (558)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 356 (558)
...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++++.+.... +...+..+...|...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998743445 4567888899999999999999999999887543 688899999999999999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 008633 357 MKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTIT 411 (558)
Q Consensus 357 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 411 (558)
.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+. .|+...+.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~ 246 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHH
Confidence 99999998764 467788899999999999999999999999886 35544433
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=2.5e-13 Score=127.47 Aligned_cols=246 Identities=11% Similarity=-0.013 Sum_probs=150.5
Q ss_pred cCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008633 280 LGQVVEMERVLKEIVAEGFS---PDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDEC 356 (558)
Q Consensus 280 ~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 356 (558)
.|++++|+..++++.+.... .+..++..+...+...|++++|.+.++++.+.... +..++..+..+|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHH
Confidence 35666666666666654211 12445666666666667777777666666665432 566666677777777777777
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 008633 357 MKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKV 436 (558)
Q Consensus 357 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (558)
.+.|+++.+.. +.+..+|..+...|...|++++|...++++.+. .|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 77777766543 334566667777777777777777777776664 233333333333445557777777777666554
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH
Q 008633 437 GCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYP---SDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRL 513 (558)
Q Consensus 437 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 513 (558)
. +++...+. ++..+...++.++|...++...+.... .+...|..+...+...|++++|...++++++. .|+.
T Consensus 174 ~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~- 248 (275)
T 1xnf_A 174 S-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN- 248 (275)
T ss_dssp S-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT-
T ss_pred C-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh-
Confidence 3 22323333 555566667777777777776543211 01467788888888889999999999888865 3532
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 008633 514 VYSKLSNKLLASNKLESAYNLF 535 (558)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~ 535 (558)
+.....++...|++++|.+.+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 223355677778888887765
No 49
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.56 E-value=2.5e-13 Score=137.27 Aligned_cols=368 Identities=8% Similarity=-0.054 Sum_probs=205.9
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhC-----CHH
Q 008633 144 EAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFF---DFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAG-----QVY 215 (558)
Q Consensus 144 ~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g-----~~~ 215 (558)
+.|...|+-+.... +..++..+...|...|+. ++|...|++..+. +...+..+...+...| +.+
T Consensus 20 ~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~ 91 (452)
T 3e4b_A 20 VTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHH 91 (452)
T ss_dssp HHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHHHH
T ss_pred HHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHH
Confidence 44555555444331 334455566666666666 7777777776643 4455555555444443 667
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHH---HHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 216 KAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAA---SSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKE 292 (558)
Q Consensus 216 ~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A---~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 292 (558)
+|++.|++..+.|.. ..+..|...|...+..+.+ .+.+...... .+...+..|...|...+.++++......
T Consensus 92 ~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~--g~~~a~~~Lg~~y~~~~~~~~~~~~a~~ 166 (452)
T 3e4b_A 92 EAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA--GYPEAGLAQVLLYRTQGTYDQHLDDVER 166 (452)
T ss_dssp HHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH--TCTTHHHHHHHHHHHHTCGGGGHHHHHH
T ss_pred HHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 778788777776532 2566666666665544333 3333333211 1455666777777777755544444333
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHhhh
Q 008633 293 IVAEGFSPDSLTFSFLIEGLGRAG---RIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISV----GDFDECMKYYKGMSS 365 (558)
Q Consensus 293 m~~~g~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~ 365 (558)
+.+.-...+...+..+...|...| +.++|.+.|++..+.|.. +...+..|..+|... +++++|.++|++..
T Consensus 167 ~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa- 244 (452)
T 3e4b_A 167 ICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA- 244 (452)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-
Confidence 332211222336667777777777 778888888888877754 555555666766554 67888888888877
Q ss_pred CCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHHHcC
Q 008633 366 YNCEPNMDTYTRLISG-L--LKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYG-----PPHAAMMMYKKARKVG 437 (558)
Q Consensus 366 ~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~ 437 (558)
. -+...+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|..+|++.. .
T Consensus 245 ~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~- 315 (452)
T 3e4b_A 245 P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G- 315 (452)
T ss_dssp G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T-
T ss_pred C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C-
Confidence 3 345555666555 3 35778888888888887766 4555555555554 44 7888888887766 3
Q ss_pred CCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCC
Q 008633 438 CKLSLTAYKLLLRRLSG----FGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCN----IGQLENAVLVMEESLRKGFC 509 (558)
Q Consensus 438 ~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~ 509 (558)
-+...+..|...|.. ..+.++|...|+...+.|. ......|...|.. ..+.++|..+++...+.|.
T Consensus 316 --g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~- 389 (452)
T 3e4b_A 316 --REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT- 389 (452)
T ss_dssp --TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-
T ss_pred --CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-
Confidence 355666666666665 3478888888888877663 2345555555553 3578888888888887763
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 510 PSRLVYSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 510 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
++.......+......++.++|.++.++.+..
T Consensus 390 ~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 390 PEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 33332222333333445667777777766553
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=1.9e-12 Score=117.21 Aligned_cols=163 Identities=11% Similarity=-0.083 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 008633 235 SLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKL-GQVVEMERVLKEIVAEGFSPD-SLTFSFLIEGL 312 (558)
Q Consensus 235 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~ 312 (558)
.+..+...+...|++++|.+.+++.....+.+..++..+...+... |++++|...++++.+.+..|+ ...+..+...+
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 123 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS 123 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHH
Confidence 3333333333334444444433333332233334444444444444 444444444444443111121 23334444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CCHHHHHHHHHHHHhcCCHHHH
Q 008633 313 GRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCE-PNMDTYTRLISGLLKSRKVADA 391 (558)
Q Consensus 313 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A 391 (558)
...|++++|...++++.+.... +...+..+..++.+.|++++|.++++++.+.. + .+...+..+...+...|+.++|
T Consensus 124 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a 201 (225)
T 2vq2_A 124 AKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAA 201 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHH
Confidence 4444444444444444433211 33444444444444444444444444444322 1 2333344444444444444444
Q ss_pred HHHHHHHH
Q 008633 392 LEVFEEML 399 (558)
Q Consensus 392 ~~~~~~m~ 399 (558)
..+++.+.
T Consensus 202 ~~~~~~~~ 209 (225)
T 2vq2_A 202 YEYEAQLQ 209 (225)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=2e-12 Score=117.00 Aligned_cols=211 Identities=14% Similarity=0.043 Sum_probs=181.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVL 240 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 240 (558)
.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 456788999999999999999999999998864 3468899999999999999999999999998764 34778899999
Q ss_pred HHHHhc-CCHhHHHHHHHHhhc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008633 241 WCLCQR-LHVGAASSLFNSMKG--KVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGR 317 (558)
Q Consensus 241 ~~~~~~-~~~~~A~~~~~~m~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 317 (558)
..+... |++++|...++++.. ..+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 999999 999999999999987 444457889999999999999999999999998864 3357889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 008633 318 IDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYT 376 (558)
Q Consensus 318 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 376 (558)
+++|.+.++++.+.....+...+..+...+...|+.++|..+++.+.+. .|+.....
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~ 219 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHH
Confidence 9999999999988754247788888889999999999999999998764 35544333
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=4.7e-13 Score=123.01 Aligned_cols=203 Identities=11% Similarity=0.049 Sum_probs=117.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVV 239 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 239 (558)
..+..+|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|++.++++.+.. +.+..++..+
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 97 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGA 97 (243)
T ss_dssp ----------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHH
Confidence 3455667777777888888888888888887753 3467777777788888888888888888777653 2356666667
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 008633 240 LWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRID 319 (558)
Q Consensus 240 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 319 (558)
...+...|++++|.+.++++....+.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.|+++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 7777777777777777776655555566666666777777777777777776666542 224555555666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 008633 320 DAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSY 366 (558)
Q Consensus 320 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 366 (558)
+|.+.++++.+.... +..++..+..+|.+.|++++|.+.++++.+.
T Consensus 177 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 666666665554322 4555555666666666666666666655543
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=7.9e-13 Score=121.47 Aligned_cols=157 Identities=10% Similarity=0.052 Sum_probs=55.1
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 008633 240 LWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRID 319 (558)
Q Consensus 240 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 319 (558)
...+...|++++|...|+++....+.+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+...+...|+++
T Consensus 30 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 108 (243)
T 2q7f_A 30 MGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYK 108 (243)
T ss_dssp ------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHH
Confidence 3333333344444443333333333333344444444444444444444444433321 112333333333344444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 320 DAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEML 399 (558)
Q Consensus 320 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (558)
+|.+.++++.+.... +...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus 109 ~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 186 (243)
T 2q7f_A 109 EAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVT 186 (243)
T ss_dssp HHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444443333211 23333334444444444444444444433321 1223333333344444444444444444333
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.54 E-value=1.5e-12 Score=127.66 Aligned_cols=198 Identities=9% Similarity=0.035 Sum_probs=130.0
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HhHHHHHHHHhhcCCCCChhhHHHHHH
Q 008633 197 DLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLH-VGAASSLFNSMKGKVLFNVMTYNIVIS 275 (558)
Q Consensus 197 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~-~~~A~~~~~~m~~~~~~~~~~~~~li~ 275 (558)
+...|..+...+.+.|++++|++.++++.+... -+..+|+.+..++...|+ +++|+..|++.....|-+...|+.+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 345677777778888888888888888877542 256677777777777775 777777777776666667777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHH
Q 008633 276 GWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYIS-VGDFD 354 (558)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~ 354 (558)
++.+.|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..++++++.... +...|+.+..++.+ .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 7777777777777777777653 225566666666777777777777777777666444 56666666666666 44435
Q ss_pred HH-----HHHHHHhhhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHH
Q 008633 355 EC-----MKYYKGMSSYNCEPNMDTYTRLISGLLKSR--KVADALEVFEEM 398 (558)
Q Consensus 355 ~A-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m 398 (558)
+| ++.|++..+.. +-+...|..+...+...| ++++|++.+.++
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 55 35555555432 234455555555555555 355555555554
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=1e-13 Score=130.05 Aligned_cols=244 Identities=12% Similarity=-0.018 Sum_probs=140.0
Q ss_pred CCHhHHHHHHHHhhcCC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 247 LHVGAASSLFNSMKGKV----LFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAI 322 (558)
Q Consensus 247 ~~~~~A~~~~~~m~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 322 (558)
|++++|...|+++.... +.+..+|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 44555555555554321 1134455556666666666666666666665543 224555666666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008633 323 EVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRG 402 (558)
Q Consensus 323 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 402 (558)
+.++++.+.... +..++..+..+|.+.|++++|.+.|+++.+. .|+.......+..+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 666666655322 4556666666666677777777777666654 2333333334444455567777777776655542
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHH
Q 008633 403 IVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCK---LSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEI 479 (558)
Q Consensus 403 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 479 (558)
+++...+ .++..+...++.++|...+..+.+.... .+...+..+...|...|++++|...|++..+.. |+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~-- 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN-- 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--
Confidence 2222222 2444555566666677666665443211 114677778888888888999998888888753 322
Q ss_pred HHHHHHHHHhcCCHhHHHHHH
Q 008633 480 YEYVIAGLCNIGQLENAVLVM 500 (558)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~ 500 (558)
+.....++...|++++|++.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 233355667778888877665
No 56
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=3e-12 Score=129.36 Aligned_cols=344 Identities=12% Similarity=0.001 Sum_probs=228.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008633 168 VIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQV---YKAIQMLGRLEDFGLKFDAESLNVVLWCLC 244 (558)
Q Consensus 168 ~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~---~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~ 244 (558)
.+...+.+.|++++|.++|++..+.| +..++..+...|...|+. ++|+++|++..+. +...+..|...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35667788899999999999998776 344555666666777877 8999999988854 5566777777555
Q ss_pred hcC-----CHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008633 245 QRL-----HVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVV---EMERVLKEIVAEGFSPDSLTFSFLIEGLGRAG 316 (558)
Q Consensus 245 ~~~-----~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 316 (558)
..+ +.++|...|++...... ...+..|...|...+..+ ++.+.+......|. ......+...|...+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE--GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQG 155 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC--SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHT
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCC
Confidence 555 77899999988765433 347778888887766543 34555555555553 345556667777777
Q ss_pred CHHHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc----
Q 008633 317 RIDDA----IEVFDTMKEKGCGPDTNAYNAVISNYISVG---DFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKS---- 385 (558)
Q Consensus 317 ~~~~a----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---- 385 (558)
.++++ ..++...... +...+..|..+|.+.| +.++|++.|++..+.| .++...+..+...|...
T Consensus 156 ~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSS
T ss_pred CcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCC
Confidence 55444 4444443332 3337788889999999 8999999999999887 56777667777777654
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-----C
Q 008633 386 RKVADALEVFEEMLDRGIVPSTGTITSFLEP-L--CSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFG-----K 457 (558)
Q Consensus 386 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~ 457 (558)
+++++|+..|++.. .| +...+..+... + ...++.++|..+|++..+.| +...+..|...|. .| +
T Consensus 231 ~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp CCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred CCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCC
Confidence 79999999999987 33 33344444444 3 45789999999999998877 6677777777776 45 8
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHH
Q 008633 458 CGMLLDLWHEMQESGYPSDGEIYEYVIAGLCN----IGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLA----SNKLE 529 (558)
Q Consensus 458 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~ 529 (558)
+++|.+.|++.. .| +...+..|...|.. ..+.++|..+|++..+.|. + .....|...|.. ..+.+
T Consensus 303 ~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~G~g~~~d~~ 375 (452)
T 3e4b_A 303 AKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-N--SADFAIAQLFSQGKGTKPDPL 375 (452)
T ss_dssp HHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-T--THHHHHHHHHHSCTTBCCCHH
T ss_pred HHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-H--HHHHHHHHHHHhCCCCCCCHH
Confidence 999999999887 43 66777778777766 3489999999999998763 3 345567777764 45889
Q ss_pred HHHHHHHHHHHhcC
Q 008633 530 SAYNLFRKIKIARQ 543 (558)
Q Consensus 530 ~A~~~~~~m~~~~~ 543 (558)
+|...+++..+.|.
T Consensus 376 ~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 376 NAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCC
Confidence 99999888876654
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=1.2e-12 Score=130.35 Aligned_cols=301 Identities=12% Similarity=0.035 Sum_probs=164.5
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHhhcC------CCC
Q 008633 196 PDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFD----AESLNVVLWCLCQRLHVGAASSLFNSMKGK------VLF 265 (558)
Q Consensus 196 ~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~------~~~ 265 (558)
.....+......+...|++++|+..++++.+.+.. + ..++..+...+...|++++|...+++.... .+.
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34455555666666667777777777666654321 2 234555555566666666666665554211 011
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008633 266 NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFS-PDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVI 344 (558)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 344 (558)
...++..+...+...|++++|...+++..+.... ++ ......++..+.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------------------~~~~~~~~~~l~ 134 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-------------------------------KVGEARALYNLG 134 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-------------------------------ccchHHHHHHHH
Confidence 2334445555555555555555555554442100 01 000122445555
Q ss_pred HHHHhcCC--------------------HHHHHHHHHHhhhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 345 SNYISVGD--------------------FDECMKYYKGMSSY----NCE-PNMDTYTRLISGLLKSRKVADALEVFEEML 399 (558)
Q Consensus 345 ~~~~~~g~--------------------~~~A~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (558)
..|...|+ +++|.+.+++..+. +.. ....++..+...|...|++++|...+++..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 55555555 55555555544321 101 112345556666666666666666666654
Q ss_pred HCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 008633 400 DRGI-VPS----TGTITSFLEPLCSYGPPHAAMMMYKKARKV----GCKL-SLTAYKLLLRRLSGFGKCGMLLDLWHEMQ 469 (558)
Q Consensus 400 ~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 469 (558)
+... .++ ...+..+...+...|++++|...+++..+. +..+ ...++..+...|...|++++|...+++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3210 111 124555666666677777777777665542 1111 14566677777888888888888877765
Q ss_pred HCCC-CCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCH
Q 008633 470 ESGY-PSD----GEIYEYVIAGLCNIGQLENAVLVMEESLRK----GFCPS-RLVYSKLSNKLLASNKL 528 (558)
Q Consensus 470 ~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~ 528 (558)
+..- ..+ ..++..+...+...|++++|...++++.+. +..+. ..++..+...+...|+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 4210 111 446777888888888888888888887653 21111 45677777777777655
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=1.2e-12 Score=130.78 Aligned_cols=133 Identities=11% Similarity=-0.053 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHHCC--CC---CCHH
Q 008633 409 TITSFLEPLCSYGPPHAAMMMYKKARKVGC-KLS----LTAYKLLLRRLSGFGKCGMLLDLWHEMQESG--YP---SDGE 478 (558)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~---p~~~ 478 (558)
.+..+...+...|++++|...+++..+... ..+ ...+..+...|...|++++|...+++..+.. .. ....
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 444555555666666666666665544210 011 2356667777778888888887777665421 00 1145
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 479 IYEYVIAGLCNIGQLENAVLVMEESLRK----GFCP-SRLVYSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
++..+...+...|++++|...++++++. +-.+ ...++..+...|.+.|++++|.+.+++..+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 6777888888888888888888887653 1011 1457777888888888888888888887643
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.47 E-value=2.1e-12 Score=128.96 Aligned_cols=236 Identities=14% Similarity=0.031 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhC----C-CCCCH
Q 008633 163 VKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDL----ETLSIVMDSFIRAGQVYKAIQMLGRLEDF----G-LKFDA 233 (558)
Q Consensus 163 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~----~t~~~li~~~~~~g~~~~A~~~~~~~~~~----g-~~~~~ 233 (558)
...+..+...+...|++++|+..|++..+.+. .+. .++..+...+...|++++|++.++++.+. + .....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 34455677788899999999999999988642 233 46788888899999999999998887643 1 12234
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcC------CCCChhhHHHHHHHHHhcCC-----------------HHHHHHHH
Q 008633 234 ESLNVVLWCLCQRLHVGAASSLFNSMKGK------VLFNVMTYNIVISGWSKLGQ-----------------VVEMERVL 290 (558)
Q Consensus 234 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~------~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~ 290 (558)
.++..+...|...|++++|...+++.... .+....++..+...|...|+ +++|.+.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 56777777888888888888887765421 12234467777777777777 77777766
Q ss_pred HHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 008633 291 KEIVAE----GFSP-DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCG-PD----TNAYNAVISNYISVGDFDECMKYY 360 (558)
Q Consensus 291 ~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~ 360 (558)
++..+. +..+ ...++..+...+...|++++|.+.+++..+.... .+ ..++..+...|...|++++|.+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 665431 1111 1234555556666666666666666665433110 01 124555555666666666666666
Q ss_pred HHhhhCCC----C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 361 KGMSSYNC----E-PNMDTYTRLISGLLKSRKVADALEVFEEML 399 (558)
Q Consensus 361 ~~m~~~~~----~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (558)
++..+... . ....++..+...|...|++++|...+++..
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55543110 0 012344455555555555555555555543
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=1.1e-12 Score=130.39 Aligned_cols=240 Identities=13% Similarity=0.050 Sum_probs=164.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhC----CCCC
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPD----LETLSIVMDSFIRAGQVYKAIQMLGRLEDF----GLKF 231 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~----~~t~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~~ 231 (558)
......+......+...|++++|...|++..+.+. .+ ..++..+...+...|++++|.+.++++.+. +-.+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 45677788889999999999999999999988742 23 357888899999999999999999887542 2122
Q ss_pred -CHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCC------CChhhHHHHHHHHHhcCC--------------------HH
Q 008633 232 -DAESLNVVLWCLCQRLHVGAASSLFNSMKGKVL------FNVMTYNIVISGWSKLGQ--------------------VV 284 (558)
Q Consensus 232 -~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~------~~~~~~~~li~~~~~~g~--------------------~~ 284 (558)
...++..+...|...|++++|...+++.....+ ....++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 256788889999999999999999987743211 124478888899999999 88
Q ss_pred HHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHH
Q 008633 285 EMERVLKEIVAE----GFSP-DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGC-GPD----TNAYNAVISNYISVGDFD 354 (558)
Q Consensus 285 ~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~ 354 (558)
+|...+++..+. +..+ ...++..+...+...|++++|.+.+++..+... .++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 888888776542 1111 124566666777777777777777777654311 011 235666666777777777
Q ss_pred HHHHHHHHhhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 355 ECMKYYKGMSSY----NCEP-NMDTYTRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 355 ~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
+|...+++..+. +..+ ...++..+...|...|++++|...+++..+
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 777777665532 1000 034555566666666666666666665543
No 61
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.45 E-value=1.6e-09 Score=113.33 Aligned_cols=222 Identities=11% Similarity=0.016 Sum_probs=162.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 321 AIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECM-KYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEML 399 (558)
Q Consensus 321 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (558)
+..+|++.... ++-+...|-..+..+...|+.++|. ++|++.... ++.+...|-..+...-+.|++++|.++|+.+.
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44556666554 2335667777777777888888996 999998864 45567778888888889999999999999887
Q ss_pred HCC---------CCCC------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CC
Q 008633 400 DRG---------IVPS------------TGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGF-GK 457 (558)
Q Consensus 400 ~~~---------~~p~------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~ 457 (558)
... -.|+ ...|...+....+.|..+.|..+|.++.+.-.......|...+..-.+. ++
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence 631 0132 2357777777777889999999999998761122334444333333344 45
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 008633 458 CGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCP--SRLVYSKLSNKLLASNKLESAYNLF 535 (558)
Q Consensus 458 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 535 (558)
.+.|..+|+...+. ++-+...|...+......|+.+.|..+|++++.....+ ....|...+..-.+.|+.+.+.++.
T Consensus 486 ~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 486 TKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 89999999988875 35566777888888888999999999999998764222 2567888888888999999999999
Q ss_pred HHHHHhcCCc
Q 008633 536 RKIKIARQND 545 (558)
Q Consensus 536 ~~m~~~~~~~ 545 (558)
+++.+.-...
T Consensus 565 ~R~~~~~P~~ 574 (679)
T 4e6h_A 565 KRFFEKFPEV 574 (679)
T ss_dssp HHHHHHSTTC
T ss_pred HHHHHhCCCC
Confidence 9998765543
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=2.4e-12 Score=124.12 Aligned_cols=198 Identities=14% Similarity=0.073 Sum_probs=109.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhC----CCC-CCHHH
Q 008633 165 SYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPD----LETLSIVMDSFIRAGQVYKAIQMLGRLEDF----GLK-FDAES 235 (558)
Q Consensus 165 ~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~----~~t~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~-~~~~~ 235 (558)
.+......+...|++++|...|+++.+... .+ ...+..+...+...|++++|.+.++++.+. +-. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 445556667788888888888888877532 23 356677777888888888888887776532 111 12345
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhcC---CC---CChhhHHHHHHHHHhcCC--------------------HHHHHHH
Q 008633 236 LNVVLWCLCQRLHVGAASSLFNSMKGK---VL---FNVMTYNIVISGWSKLGQ--------------------VVEMERV 289 (558)
Q Consensus 236 ~~~ll~~~~~~~~~~~A~~~~~~m~~~---~~---~~~~~~~~li~~~~~~g~--------------------~~~A~~~ 289 (558)
+..+...|...|++++|...+++.... .. ....++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 666666777777777777777665321 10 012356666666666666 6666666
Q ss_pred HHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008633 290 LKEIVAE----GFSP-DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGC-----GPDTNAYNAVISNYISVGDFDECMKY 359 (558)
Q Consensus 290 ~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-----~p~~~~~~~li~~~~~~g~~~~A~~~ 359 (558)
+++.... +..+ ...++..+...+...|++++|.+.+++..+... .....++..+...|...|++++|.+.
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6554331 1011 122344445555555555555555555432200 00112344444445555555555555
Q ss_pred HHHh
Q 008633 360 YKGM 363 (558)
Q Consensus 360 ~~~m 363 (558)
+++.
T Consensus 246 ~~~a 249 (338)
T 3ro2_A 246 YKKT 249 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.43 E-value=4.4e-12 Score=122.30 Aligned_cols=275 Identities=11% Similarity=0.051 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHhhcC------CCCChhh
Q 008633 200 TLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFD----AESLNVVLWCLCQRLHVGAASSLFNSMKGK------VLFNVMT 269 (558)
Q Consensus 200 t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~------~~~~~~~ 269 (558)
.+......+...|++++|+..++++.+.... + ...+..+...+...|++++|.+.+++.... .+....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 4445566777888888888888888775322 3 356777777888888888888887765321 1123456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 008633 270 YNIVISGWSKLGQVVEMERVLKEIVAEGF-SPD----SLTFSFLIEGLGRAGR--------------------IDDAIEV 324 (558)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~--------------------~~~a~~~ 324 (558)
+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 77777777788888888877777654210 011 2355566666666666 6666666
Q ss_pred HHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHH
Q 008633 325 FDTMKEK----GCG-PDTNAYNAVISNYISVGDFDECMKYYKGMSSYNC-EP----NMDTYTRLISGLLKSRKVADALEV 394 (558)
Q Consensus 325 ~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p----~~~~~~~li~~~~~~g~~~~A~~~ 394 (558)
+++..+. +.. ....++..+...|...|++++|.+.+++..+... .+ ...++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6554322 100 0122444555555555555555555555442100 00 012344444444445555555544
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHC--
Q 008633 395 FEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCK-LSLTAYKLLLRRLSGFGKCGMLLDLWHEMQES-- 471 (558)
Q Consensus 395 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 471 (558)
+++..+... ..+.. ....++..+...+...|++++|...+++..+.
T Consensus 246 ~~~al~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 246 YKKTLLLAR-------------------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHHHHHHHH-------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------------------------------hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 444332100 00000 01344555666666677777777666665431
Q ss_pred --CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 472 --GY-PSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 472 --~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
+- .....++..+...+...|++++|...++++.+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 10 111336677777888888888888888887764
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.43 E-value=2e-10 Score=109.81 Aligned_cols=219 Identities=9% Similarity=-0.018 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------hCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008633 180 DFMCNVLSDMAKEGVNPDLETLSIVMDSFIR-------AGQV-------YKAIQMLGRLEDFGLKFDAESLNVVLWCLCQ 245 (558)
Q Consensus 180 ~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~-------~g~~-------~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 245 (558)
++|..+|++..... +-+...|...+..+.. .|+. ++|..+|++..+.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777652 3466677777766653 3664 6777777777762112355567777777777
Q ss_pred cCCHhHHHHHHHHhhcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHH
Q 008633 246 RLHVGAASSLFNSMKGKVLFNVM-TYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLG-RAGRIDDAIE 323 (558)
Q Consensus 246 ~~~~~~A~~~~~~m~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~a~~ 323 (558)
.|++++|.++|++.....|.+.. .|..++..+.+.|++++|..+|++..+.. +.+...|........ ..|+.++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777777654333443 67777777777777777777777776643 223333433322221 2567777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 324 VFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYN-CEP--NMDTYTRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 324 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
+|+...+.... +...|..++..+.+.|++++|..+|++..+.. ..| ....|..++..+.+.|+.++|..+++++.+
T Consensus 191 ~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 191 IFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77776655322 56666666777777777777777777776642 233 345666666666666777777777766665
Q ss_pred C
Q 008633 401 R 401 (558)
Q Consensus 401 ~ 401 (558)
.
T Consensus 270 ~ 270 (308)
T 2ond_A 270 A 270 (308)
T ss_dssp H
T ss_pred H
Confidence 3
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=1.5e-11 Score=121.60 Aligned_cols=235 Identities=9% Similarity=-0.019 Sum_probs=112.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------CCCHHHHH
Q 008633 273 VISGWSKLGQVVEMERVLKEIVAE----GFSP-DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGC------GPDTNAYN 341 (558)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~------~p~~~~~~ 341 (558)
....+...|++++|...+++..+. +-.+ ...++..+...+...|++++|...+++..+.-. .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444455566666666666665542 1011 123455555555556666666555555443210 00123455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008633 342 AVISNYISVGDFDECMKYYKGMSSY----NCEP-NMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEP 416 (558)
Q Consensus 342 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 416 (558)
.+...|...|++++|.+.|++..+. +..+ ...++..+...|...|++++|...+++..+..
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~-------------- 254 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF-------------- 254 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------------
Confidence 5555555566666665555554421 0000 01244445555555555555555555444310
Q ss_pred HHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcC
Q 008633 417 LCSYGPPHAAMMMYKKARKVGC-KLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQES----GYPSDGEIYEYVIAGLCNIG 491 (558)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g 491 (558)
.+.+. +....++..+...+...|++++|...+++..+. +-+.....+..+...+...|
T Consensus 255 -----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (383)
T 3ulq_A 255 -----------------EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317 (383)
T ss_dssp -----------------HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred -----------------HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 00011 122334444444455555555555544444321 10111122444555566666
Q ss_pred C---HhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 492 Q---LENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 492 ~---~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
+ +++|+.++++. +..|+ ...+..+...|.+.|++++|.+.+++..+.
T Consensus 318 ~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 318 DEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6 55566555544 22222 345666777777777777777777766543
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.41 E-value=3.6e-10 Score=107.95 Aligned_cols=236 Identities=13% Similarity=0.075 Sum_probs=165.1
Q ss_pred ChhhHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHH
Q 008633 266 NVMTYNIVISGWSKL----GQV----VEMERVLKEIVAEGFSPDSLTFSFLIEGLG-------RAGRI-------DDAIE 323 (558)
Q Consensus 266 ~~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~g~~-------~~a~~ 323 (558)
+...|...+..-.+. ++. ++|..+|++..... +-+...|..+...+. +.|++ ++|..
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 345566666654443 233 67788888887753 335667777776665 34775 78888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 324 VFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPN-MD-TYTRLISGLLKSRKVADALEVFEEMLDR 401 (558)
Q Consensus 324 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (558)
+|++..+.-.+-+...|..++..+.+.|++++|.++|+++.+. .|+ .. .|..++..+.+.|++++|..+|++..+.
T Consensus 86 ~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 86 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888887312225668888888888888888888888888874 443 33 7888888888888888888888888875
Q ss_pred CCCCCHHHHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCC--CH
Q 008633 402 GIVPSTGTITSFLEPL-CSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESG-YPS--DG 477 (558)
Q Consensus 402 ~~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~ 477 (558)
.. .+...|....... ...|+.++|..+|+++.+.. +-+...|..++..+.+.|++++|..+|++..+.. ++| ..
T Consensus 164 ~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~ 241 (308)
T 2ond_A 164 AR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 241 (308)
T ss_dssp TT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred CC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence 42 2333443332221 12688888888888877653 3467777888888888888888888888888752 344 35
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 478 EIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 478 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
..|..++....+.|+.++|..+++++.+.
T Consensus 242 ~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 242 EIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57777788888888888888888888765
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.40 E-value=7.8e-11 Score=103.10 Aligned_cols=165 Identities=14% Similarity=0.074 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008633 233 AESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGL 312 (558)
Q Consensus 233 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 312 (558)
..+|..+...|.+.|++++|++.|++.....|-+..+|..+...|.+.|++++|...+....... +-+...+..+...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 33444444444444444444444444443333444455555555555555555555555544432 12333444444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 313 GRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADAL 392 (558)
Q Consensus 313 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 392 (558)
...++++.+.+.+.+..+.... +...+..+..+|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|+
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHH
Confidence 4555555555555554444322 44445555555555555555555555554432 234445555555555555555555
Q ss_pred HHHHHHHH
Q 008633 393 EVFEEMLD 400 (558)
Q Consensus 393 ~~~~~m~~ 400 (558)
+.|++..+
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555544
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.40 E-value=1e-11 Score=126.17 Aligned_cols=196 Identities=11% Similarity=-0.003 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008633 336 DTNAYNAVISNYISVGDF-DECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFL 414 (558)
Q Consensus 336 ~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 414 (558)
+...+..+...|...|++ ++|++.|++..+.. +.+...|..+...|...|++++|.+.|++..+. .|+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 344444444444444444 45555444444332 223444444455555555555555555554443 23344444444
Q ss_pred HHHHhc---------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--------CChhHHHHHHHHHHHCCCC---
Q 008633 415 EPLCSY---------GPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGF--------GKCGMLLDLWHEMQESGYP--- 474 (558)
Q Consensus 415 ~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~--- 474 (558)
..+... |++++|+..++++.+.. +.+...|..+..+|... |++++|+..|++..+.. +
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcc
Confidence 444444 55555555555555433 23345555555555555 66666666666666542 2
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 475 SDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRK 537 (558)
Q Consensus 475 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 537 (558)
-+...|..+..+|...|++++|...|+++.+.. +-+...+..+..++...|++++|.+.+.+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356666667777777777777777777766542 22355666666666666777666655433
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.39 E-value=5.5e-11 Score=117.52 Aligned_cols=227 Identities=11% Similarity=0.012 Sum_probs=160.2
Q ss_pred HhcCChHHHHHHHHHHHHC--CCCCCHH--HHHHHHHH--HHHhCCHHHHH-----------HHHHHHHhCCCCCC----
Q 008633 174 GRRKFFDFMCNVLSDMAKE--GVNPDLE--TLSIVMDS--FIRAGQVYKAI-----------QMLGRLEDFGLKFD---- 232 (558)
Q Consensus 174 ~~~~~~~~a~~l~~~m~~~--g~~~~~~--t~~~li~~--~~~~g~~~~A~-----------~~~~~~~~~g~~~~---- 232 (558)
.+.+++++|..+++++.+. .+..|.. .|-.++.. ..-.+..+.+. +.++.+.......+
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~ 102 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLE 102 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHH
Confidence 5689999999999998764 2333433 33333332 22334444455 66666654221111
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhcC---CCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC---C-C
Q 008633 233 AESLNVVLWCLCQRLHVGAASSLFNSMKGK---VLF---NVMTYNIVISGWSKLGQVVEMERVLKEIVAE--GF---S-P 300 (558)
Q Consensus 233 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~---~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~---~-p 300 (558)
...+......+...|++++|...|++.... .+. ...+|..+...|...|++++|...+.+..+. .. . .
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 112223556778899999999999988543 221 3467899999999999999999999988763 11 1 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC-CC
Q 008633 301 DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCG-PD----TNAYNAVISNYISVGDFDECMKYYKGMSSY----NC-EP 370 (558)
Q Consensus 301 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p 370 (558)
...+++.+...|...|++++|.+.+++..+.... .+ ..++..+..+|...|++++|.+.|++..+. +. +.
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 2357888889999999999999999988754211 11 247888999999999999999999998762 22 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 371 NMDTYTRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 371 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
...++..+...|.+.|++++|...+++..+
T Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456788888899999999999999888754
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=2.1e-12 Score=123.37 Aligned_cols=240 Identities=12% Similarity=0.057 Sum_probs=150.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhC-----
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKE-------GVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDF----- 227 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~-------g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~----- 227 (558)
+.+..+|..+...+...|++++|..+++++.+. .......++..+...+...|++++|.+.++++.+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 345677899999999999999999999998763 22334567888889999999999999999888753
Q ss_pred -C-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcC--------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 008633 228 -G-LKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGK--------VLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE- 296 (558)
Q Consensus 228 -g-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 296 (558)
+ ......++..+...|...|++++|...|++.... .+....++..+...+...|++++|.+++++..+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 1223566778888888888888888888776432 1234556777888888888888888888877664
Q ss_pred -----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCC-------HHHHHHHHHHHHhcCCHHHH
Q 008633 297 -----GFSP-DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKG-------CGPD-------TNAYNAVISNYISVGDFDEC 356 (558)
Q Consensus 297 -----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g-------~~p~-------~~~~~~li~~~~~~g~~~~A 356 (558)
+..| ...++..+...+...|++++|.+.++++.+.. ..+. ...+..+...+...+.+.+|
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 2122 23456777777788888888888887776531 1111 11122222233334444444
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 357 MKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 357 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
...+....... +.+..++..+...|.+.|++++|.+.+++..+
T Consensus 264 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 264 GGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555444321 23344566666666666666666666665543
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=3.6e-12 Score=121.72 Aligned_cols=169 Identities=12% Similarity=0.076 Sum_probs=83.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C
Q 008633 266 NVMTYNIVISGWSKLGQVVEMERVLKEIVAE-------GFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEK------G 332 (558)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~------g 332 (558)
+..++..+...+...|++++|..+++++.+. ........+..+...+...|++++|...++++.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3445555555555556666665555555542 11122344555555555555666555555555433 1
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 008633 333 C-GPDTNAYNAVISNYISVGDFDECMKYYKGMSSY------NC-EPNMDTYTRLISGLLKSRKVADALEVFEEMLDR--- 401 (558)
Q Consensus 333 ~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 401 (558)
. +....++..+...|...|++++|.+.|+++.+. +. +.....+..+...+...|++++|.+.++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 112344555555666666666666666555432 11 112334555555555666666666665555442
Q ss_pred ---CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008633 402 ---GIVPS-TGTITSFLEPLCSYGPPHAAMMMYKKAR 434 (558)
Q Consensus 402 ---~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (558)
+..|. ..++..+...+...|++++|...++++.
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11111 2234444445555555555555555444
No 72
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.39 E-value=9.7e-11 Score=102.52 Aligned_cols=167 Identities=17% Similarity=0.058 Sum_probs=108.2
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHH
Q 008633 197 DLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISG 276 (558)
Q Consensus 197 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~ 276 (558)
+...|..+...+.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...++......+.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 44556666666666666666666666666543 22555666666666666666666666666655555566666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008633 277 WSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDEC 356 (558)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 356 (558)
+...++++.|...+.+..+.. +-+...+..+...+.+.|++++|.+.|++..+.... +..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHH
Confidence 677777777777776666543 234556666666777777777777777776665433 566677777777777777777
Q ss_pred HHHHHHhhhC
Q 008633 357 MKYYKGMSSY 366 (558)
Q Consensus 357 ~~~~~~m~~~ 366 (558)
++.|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 7777776654
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.35 E-value=3.3e-11 Score=122.48 Aligned_cols=192 Identities=13% Similarity=0.037 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHhcCCH-hHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008633 232 DAESLNVVLWCLCQRLHV-GAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIE 310 (558)
Q Consensus 232 ~~~~~~~ll~~~~~~~~~-~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 310 (558)
+...+..+...|...|++ ++|.+.|++.....|.+...|..+...|.+.|++++|.+.|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 334444444444444444 44444444443333334444444444444445555555544444443 233344444444
Q ss_pred HHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHhhhCCCC---C
Q 008633 311 GLGRA---------GRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISV--------GDFDECMKYYKGMSSYNCE---P 370 (558)
Q Consensus 311 ~~~~~---------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~---p 370 (558)
.+... |++++|.+.+++..+.... +...|..+..+|... |++++|++.|++..+.. + -
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCccc
Confidence 44444 4455555555554444322 344444455555444 44555555555544431 1 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 008633 371 NMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMM 428 (558)
Q Consensus 371 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 428 (558)
+...|..+..+|...|++++|.+.|++..+.. +-+...+..+...+...|++++|+.
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555544432 1122333344444444444444433
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.33 E-value=5.4e-10 Score=110.13 Aligned_cols=128 Identities=16% Similarity=0.119 Sum_probs=67.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHC----CCCCCHHHHH
Q 008633 410 ITSFLEPLCSYGPPHAAMMMYKKARKV----GCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQES----GYPSDGEIYE 481 (558)
Q Consensus 410 ~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~ 481 (558)
+..+...|...|++++|...+++..+. +.+....++..+...+.+.|++++|...+++..+. +-+.....+.
T Consensus 225 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 304 (378)
T 3q15_A 225 LLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFL 304 (378)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 334444444455555555555444430 11222455555666666666666666666665542 1111122344
Q ss_pred HHHHHHHhcCC---HhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 482 YVIAGLCNIGQ---LENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 482 ~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
.+...+...|+ +++|+.++++ .+..|+ ...+..+...|...|++++|.+.+++..+
T Consensus 305 ~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 305 FLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44445555566 6666666654 222222 34556677777777777777777777654
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.31 E-value=1.9e-10 Score=113.36 Aligned_cols=308 Identities=11% Similarity=-0.002 Sum_probs=217.7
Q ss_pred CCCCHHHHHHHHHHH--HHhCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHH--HhcCCHhHHH---------HHH
Q 008633 194 VNPDLETLSIVMDSF--IRAGQVYKAIQMLGRLEDF--GLKFD--AESLNVVLWCL--CQRLHVGAAS---------SLF 256 (558)
Q Consensus 194 ~~~~~~t~~~li~~~--~~~g~~~~A~~~~~~~~~~--g~~~~--~~~~~~ll~~~--~~~~~~~~A~---------~~~ 256 (558)
+.|+..+-..+-..| ...+++++|.++++++.+. ....| ...|-.|+..- .-.+.++.+. +.+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 345666667777777 8899999999999998753 22233 33344444331 1123333334 666
Q ss_pred HHhhcCCCC-C-hh---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 257 NSMKGKVLF-N-VM---TYNIVISGWSKLGQVVEMERVLKEIVAEGF-SPD----SLTFSFLIEGLGRAGRIDDAIEVFD 326 (558)
Q Consensus 257 ~~m~~~~~~-~-~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~ 326 (558)
+.+.....+ + .. .|......+...|++++|...|++..+... .++ ..++..+...|...|++++|...++
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 666432111 1 11 233455667889999999999999886411 122 4578888999999999999999999
Q ss_pred HHHHCCC-----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 008633 327 TMKEKGC-----GP-DTNAYNAVISNYISVGDFDECMKYYKGMSSY----NCEP-NMDTYTRLISGLLKSRKVADALEVF 395 (558)
Q Consensus 327 ~m~~~g~-----~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~ 395 (558)
+..+... .+ ...+++.+..+|...|++++|.+.|++..+. +..+ ...++..+...|...|++++|...+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8875411 11 2457888999999999999999999988752 2111 2357788999999999999999999
Q ss_pred HHHHH-----CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHcCCC---hhHHHH
Q 008633 396 EEMLD-----RGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVG----CKLSLTAYKLLLRRLSGFGK---CGMLLD 463 (558)
Q Consensus 396 ~~m~~-----~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~~ 463 (558)
++..+ .. +....++..+...+...|++++|...+++..+.. .+.....+..+...+...++ +.+|+.
T Consensus 246 ~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 246 QKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99877 43 2236678888889999999999999999988742 22234556667777778888 777777
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008633 464 LWHEMQESGYPSD-GEIYEYVIAGLCNIGQLENAVLVMEESLR 505 (558)
Q Consensus 464 ~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 505 (558)
.+++. +..|+ ...+..+...|...|++++|...++++.+
T Consensus 325 ~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 325 YFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77663 22222 34677888999999999999999998875
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.31 E-value=4.4e-10 Score=97.88 Aligned_cols=163 Identities=13% Similarity=0.052 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008633 235 SLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGR 314 (558)
Q Consensus 235 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 314 (558)
.+..+...+...|++++|...++++....+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 344444555555555555555555544444455555555555555566666665555555442 2234455555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008633 315 AGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEV 394 (558)
Q Consensus 315 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 394 (558)
.|++++|.+.++++.+.... +...+..+...+...|++++|.++++++.+.. +.+...+..+...+...|++++|...
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555544322 44555555555666666666666666555432 33445555555555566666666665
Q ss_pred HHHHHH
Q 008633 395 FEEMLD 400 (558)
Q Consensus 395 ~~~m~~ 400 (558)
+++..+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.30 E-value=9.3e-10 Score=108.16 Aligned_cols=300 Identities=11% Similarity=-0.021 Sum_probs=201.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH----HHH
Q 008633 236 LNVVLWCLCQRLHVGAASSLFNSMKGKVLFNV-----MTYNIVISGWSKLGQVVEMERVLKEIVAEGF-SPDS----LTF 305 (558)
Q Consensus 236 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~ 305 (558)
.......+...|++++|...+++.....+++. .+++.+...+...|++++|...+++...... ..+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 34455567778999999999988765443332 2567777888889999999999988765310 1122 335
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC---C-CHHH
Q 008633 306 SFLIEGLGRAGRIDDAIEVFDTMKEK----GCG--P-DTNAYNAVISNYISVGDFDECMKYYKGMSSYNCE---P-NMDT 374 (558)
Q Consensus 306 ~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---p-~~~~ 374 (558)
..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+..-. + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66777888899999999999887653 222 2 2346677888889999999999999987653211 1 2356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHH----HHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHH
Q 008633 375 YTRLISGLLKSRKVADALEVFEEMLDRGIVP--STGTIT----SFLEPLCSYGPPHAAMMMYKKARKVGCKL---SLTAY 445 (558)
Q Consensus 375 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~ 445 (558)
|..+...+...|++++|...+++.......+ ...... ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 7778888889999999999999876531111 111111 22334668899999999888876543211 13356
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008633 446 KLLLRRLSGFGKCGMLLDLWHEMQE----SGYPSDG-EIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSN 520 (558)
Q Consensus 446 ~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 520 (558)
..+...+...|++++|...+++..+ .|..++. ..+..+..++...|+.++|...+++..... +. ...+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHHH
Confidence 6777888888999999988887753 2322222 256666777888899999999988887541 10 11234
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcC
Q 008633 521 KLLASNKLESAYNLFRKIKIARQ 543 (558)
Q Consensus 521 ~~~~~g~~~~A~~~~~~m~~~~~ 543 (558)
.+...| +....+++.+.....
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHTTC
T ss_pred HHHHcc--HHHHHHHHHHHhCCC
Confidence 455555 667777777765444
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.30 E-value=2.9e-09 Score=104.56 Aligned_cols=269 Identities=10% Similarity=-0.003 Sum_probs=158.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC-CC----HHHH
Q 008633 166 YNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLE----TLSIVMDSFIRAGQVYKAIQMLGRLEDFGLK-FD----AESL 236 (558)
Q Consensus 166 ~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~----t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~----~~~~ 236 (558)
+......+...|++++|...+++........+.. ++..+...+...|++++|.+.+++....... .+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444555667889999999988887754222322 4556667777889999998888877642110 11 2335
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhcC-----C---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHH
Q 008633 237 NVVLWCLCQRLHVGAASSLFNSMKGK-----V---LFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFS----PDSLT 304 (558)
Q Consensus 237 ~~ll~~~~~~~~~~~A~~~~~~m~~~-----~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t 304 (558)
..+...+...|++++|...+++.... . +.....+..+...+...|++++|...+++....... ....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66677777888888888887766321 1 112345666777778888888888888777653211 12345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHH----HHHHHHHhcCCHHHHHHHHHHhhhCCCCC---CHHHH
Q 008633 305 FSFLIEGLGRAGRIDDAIEVFDTMKEKGCGP--DTNAYN----AVISNYISVGDFDECMKYYKGMSSYNCEP---NMDTY 375 (558)
Q Consensus 305 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~ 375 (558)
+..+...+...|++++|...+++.......+ ...... ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 6667777777788888887777765431111 111111 23344667777777777777776532111 12234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008633 376 TRLISGLLKSRKVADALEVFEEMLDR----GIVPST-GTITSFLEPLCSYGPPHAAMMMYKKAR 434 (558)
Q Consensus 376 ~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (558)
..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55666667777777777777665432 111111 133333444445555555555555443
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.27 E-value=7e-10 Score=96.58 Aligned_cols=163 Identities=16% Similarity=0.129 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHh
Q 008633 200 TLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSK 279 (558)
Q Consensus 200 t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~ 279 (558)
.+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++....+.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34444555555555555555555555432 22445555555555666666666666655544444455666666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008633 280 LGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKY 359 (558)
Q Consensus 280 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 359 (558)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..+...+...|++++|.+.
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666666542 234555666666666666666666666666655322 456666677777777777777777
Q ss_pred HHHhhh
Q 008633 360 YKGMSS 365 (558)
Q Consensus 360 ~~~m~~ 365 (558)
++++.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 80
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.23 E-value=5.9e-08 Score=101.54 Aligned_cols=407 Identities=9% Similarity=0.006 Sum_probs=276.4
Q ss_pred cCCCchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCC---H
Q 008633 138 RGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQ---V 214 (558)
Q Consensus 138 ~~~~~~~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~---~ 214 (558)
+.....+....|.+-+.+++ .|..+|..++..+.+.+.++.+..+|+.+... .+.....|..-+..-.+.|+ .
T Consensus 44 ~~~~~~d~i~~lE~~l~~np---~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~ 119 (679)
T 4e6h_A 44 RVRDESDVIGKLNDMIEEQP---TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDA 119 (679)
T ss_dssp --CCCSCHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCH
T ss_pred cccCCHHHHHHHHHHHHHCc---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchH
Confidence 33444566777877777664 69999999999999999999999999999987 45677888888888888888 9
Q ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCH--------hHHHHHHHHhhcC--C--CCChhhHHHHHHHHHh--
Q 008633 215 YKAIQMLGRLEDFG-LKFDAESLNVVLWCLCQRLHV--------GAASSLFNSMKGK--V--LFNVMTYNIVISGWSK-- 279 (558)
Q Consensus 215 ~~A~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~~~~--------~~A~~~~~~m~~~--~--~~~~~~~~~li~~~~~-- 279 (558)
+.+.++|++..... ..|++..|...+....+.++. +.+.++|+..... . +.+...|...+.....
T Consensus 120 ~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~ 199 (679)
T 4e6h_A 120 AVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWK 199 (679)
T ss_dssp HHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcc
Confidence 99999999999764 247888998888877666554 3345778765432 2 3345678888876542
Q ss_pred -------cCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHhc----------CCHHHHHHHHHHHHHC--CCC---
Q 008633 280 -------LGQVVEMERVLKEIVAEGFSPDSLTFS---FLIEGLGRA----------GRIDDAIEVFDTMKEK--GCG--- 334 (558)
Q Consensus 280 -------~g~~~~A~~~~~~m~~~g~~p~~~t~~---~ll~~~~~~----------g~~~~a~~~~~~m~~~--g~~--- 334 (558)
.++++.+.++|++.+......-..+|. .+...+... .+++.|...+.++... ++.
T Consensus 200 ~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~ 279 (679)
T 4e6h_A 200 PVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNL 279 (679)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred ccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcc
Confidence 345778899999988532221223443 333332100 1123344444443211 111
Q ss_pred ------------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 335 ------------P-----D---TNAYNAVISNYISVG-------DFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRK 387 (558)
Q Consensus 335 ------------p-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 387 (558)
| + ...|...+..--..+ ..+.+..+|++..... +-+...|...+.-+...|+
T Consensus 280 p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 280 PITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp CSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSC
T ss_pred ccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCc
Confidence 1 0 134555544332222 1234567788887652 4577788888888888999
Q ss_pred HHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC---------CCCC------------HHHH
Q 008633 388 VADAL-EVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVG---------CKLS------------LTAY 445 (558)
Q Consensus 388 ~~~A~-~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---------~~~~------------~~~~ 445 (558)
.++|. ++|++.... ++.+...+...+......|+++.|..+|+++.+.. ..|+ ..+|
T Consensus 359 ~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 359 DSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp CTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence 99997 999999874 34455566677777888999999999999987631 0131 3467
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008633 446 KLLLRRLSGFGKCGMLLDLWHEMQES-GYPSDGEIYEYVIAGLCNI-GQLENAVLVMEESLRKGFCPSRLVYSKLSNKLL 523 (558)
Q Consensus 446 ~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 523 (558)
...+....+.|..+.|..+|....+. + ......|...+..-.+. ++.+.|..+|+..++. ++-+...+...++...
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence 78888888889999999999999875 2 22334444333333344 4599999999999987 3345677788888888
Q ss_pred hcCCHHHHHHHHHHHHHhcCC-chhhhhhc
Q 008633 524 ASNKLESAYNLFRKIKIARQN-DYARRLWR 552 (558)
Q Consensus 524 ~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~ 552 (558)
..|+.+.|+.+|++....... .....+|.
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~ 545 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQ 545 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999998865542 24555553
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.20 E-value=7.3e-10 Score=117.33 Aligned_cols=164 Identities=13% Similarity=0.041 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 008633 198 LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGW 277 (558)
Q Consensus 198 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~ 277 (558)
..+|+.+...+.+.|++++|++.|++..+.. +-+..+++.+..+|.+.|++++|++.|++..+..|-+..+|+.+..++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455555555555555555555555555432 113444555555555555555555555544443333444555555555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 278 SKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECM 357 (558)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 357 (558)
.+.|++++|++.|++..+.. +-+...|+.+..++.+.|++++|++.|++..+.... +...+..+..+|...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHH
Confidence 55555555555555544432 112344444444444444444444444444444322 3444444444444444444444
Q ss_pred HHHHHhh
Q 008633 358 KYYKGMS 364 (558)
Q Consensus 358 ~~~~~m~ 364 (558)
+.++++.
T Consensus 166 ~~~~kal 172 (723)
T 4gyw_A 166 ERMKKLV 172 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.18 E-value=1e-09 Score=116.17 Aligned_cols=168 Identities=10% Similarity=-0.059 Sum_probs=148.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVL 240 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 240 (558)
-+..+|+.+..++.+.|++++|+..|++..+.. +-+..+|..+..+|.+.|++++|++.|++..+... -+...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 457889999999999999999999999998864 33688999999999999999999999999998652 3678999999
Q ss_pred HHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 241 WCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDD 320 (558)
Q Consensus 241 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 320 (558)
.+|.+.|++++|++.|++..+..|-+..+|+.+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999999877667789999999999999999999999999998864 2256789999999999999999
Q ss_pred HHHHHHHHHHC
Q 008633 321 AIEVFDTMKEK 331 (558)
Q Consensus 321 a~~~~~~m~~~ 331 (558)
|.+.++++.+.
T Consensus 164 A~~~~~kal~l 174 (723)
T 4gyw_A 164 YDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99998887654
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.16 E-value=6.3e-10 Score=104.20 Aligned_cols=156 Identities=13% Similarity=-0.002 Sum_probs=87.5
Q ss_pred hcCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHH
Q 008633 175 RRKFFDFMCNVLSDMAKE-------GVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDF------GL-KFDAESLNVVL 240 (558)
Q Consensus 175 ~~~~~~~a~~l~~~m~~~-------g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~------g~-~~~~~~~~~ll 240 (558)
..|++++|...+++..+. ..+....++..+...+...|++++|++.++++.+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 445666666655555431 11223556777777777777777777777776643 11 12234566666
Q ss_pred HHHHhcCCHhHHHHHHHHhhcC--------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHH
Q 008633 241 WCLCQRLHVGAASSLFNSMKGK--------VLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE------GFSP-DSLTF 305 (558)
Q Consensus 241 ~~~~~~~~~~~A~~~~~~m~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~ 305 (558)
.+|...|++++|.+.|++.... .+....++..+...+...|++++|...+++..+. +-.| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 6666666666666666655321 1223445566666666666666666666665543 1111 23345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 306 SFLIEGLGRAGRIDDAIEVFDTMKE 330 (558)
Q Consensus 306 ~~ll~~~~~~g~~~~a~~~~~~m~~ 330 (558)
..+...+...|++++|.+.++++.+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555666666665555543
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.14 E-value=6.7e-09 Score=94.17 Aligned_cols=196 Identities=10% Similarity=-0.041 Sum_probs=155.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVL 240 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 240 (558)
.|...|......+...|++++|...|++..+....++...+..+..++...|++++|++.+++..+.... +..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4668888999999999999999999999988764478888888999999999999999999999986533 667899999
Q ss_pred HHHHhcCCHhHHHHHHHHhhcCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 008633 241 WCLCQRLHVGAASSLFNSMKGKVLFNV-------MTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD---SLTFSFLIE 310 (558)
Q Consensus 241 ~~~~~~~~~~~A~~~~~~m~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~ 310 (558)
.+|...|++++|...|++.....|.+. ..|..+...+...|++++|+..|++..+. .|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 999999999999999999877666666 56888899999999999999999999875 455 456666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 008633 311 GLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYN 367 (558)
Q Consensus 311 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 367 (558)
++... +..+++++...+.. +...|.... ....+.+++|+..|++..+..
T Consensus 162 ~~~~~-----~~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 76544 34455666555433 444554443 344567899999999998763
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.14 E-value=5.7e-10 Score=104.49 Aligned_cols=137 Identities=15% Similarity=0.064 Sum_probs=111.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhC-----
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKE------GV-NPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDF----- 227 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~------g~-~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~----- 227 (558)
+....+|..+...+...|++++|...+++..+. +- +....++..+...+...|++++|++.++++.+.
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 345778999999999999999999999998764 21 223567888999999999999999999998764
Q ss_pred -C-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcC--------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008633 228 -G-LKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGK--------VLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE 296 (558)
Q Consensus 228 -g-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 296 (558)
. .+....++..+...|...|++++|...|++.... .+....++..+...+.+.|++++|...+++..+.
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 1234577888999999999999999999987542 3334667889999999999999999999998763
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.12 E-value=1.1e-08 Score=92.79 Aligned_cols=201 Identities=13% Similarity=0.088 Sum_probs=157.6
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHH
Q 008633 196 PDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVIS 275 (558)
Q Consensus 196 ~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~ 275 (558)
.|+..+......+...|++++|++.|++..+....++...+..+..++...|++++|.+.|++.....|.+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 46788888999999999999999999999987654677888889999999999999999999998877778889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 008633 276 GWSKLGQVVEMERVLKEIVAEGFSPDS-------LTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPD---TNAYNAVIS 345 (558)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~ 345 (558)
.+...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.+++..+. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 9999999999999999998864 2234 45777888888999999999999999876 343 456777777
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 008633 346 NYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGT 409 (558)
Q Consensus 346 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 409 (558)
+|...| ..+++++...+ ..+...|.... ....+.+++|...+++..+. .|+...
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~ 215 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTE 215 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHH
Confidence 776544 44455555443 33444454443 23456789999999999885 355433
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.03 E-value=5.7e-09 Score=98.69 Aligned_cols=130 Identities=9% Similarity=0.011 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCC----CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----
Q 008633 268 MTYNIVISGWSKL-GQVVEMERVLKEIVAEGF----SPD-SLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDT---- 337 (558)
Q Consensus 268 ~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~----~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~---- 337 (558)
.+|+.+...|... |++++|+..|++..+... ... ..++..+...+.+.|++++|...|++..+.......
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 3556666666664 777777766666654210 000 245666666777777777777777776665432211
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 008633 338 --NAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNM------DTYTRLISGLL--KSRKVADALEVFEEML 399 (558)
Q Consensus 338 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~--~~g~~~~A~~~~~~m~ 399 (558)
..|..+..++...|++++|...|++..+. .|+. ..+..++.++. ..+++++|+..|+++.
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 14556666677777777777777776643 2221 12333445443 3455667776665543
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.02 E-value=8.8e-09 Score=97.38 Aligned_cols=216 Identities=12% Similarity=0.073 Sum_probs=136.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 008633 317 RIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSY----NCEPN-MDTYTRLISGLLKSRKVADA 391 (558)
Q Consensus 317 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A 391 (558)
++++|...|++. ...|...|++++|.+.|++..+. |-.++ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666654 34566777777777777766542 21111 45677777777778888888
Q ss_pred HHHHHHHHHC----CCCC-CHHHHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHcCCChhH
Q 008633 392 LEVFEEMLDR----GIVP-STGTITSFLEPLCSY-GPPHAAMMMYKKARKVGCKL-S----LTAYKLLLRRLSGFGKCGM 460 (558)
Q Consensus 392 ~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~ 460 (558)
+..+++..+. |-.. ...++..+...|... |++++|+..|++..+..... + ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 7777776542 1100 124566777777775 88888888888776532110 1 3467778888888888888
Q ss_pred HHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH--hcC
Q 008633 461 LLDLWHEMQESGYPSDG------EIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSR------LVYSKLSNKLL--ASN 526 (558)
Q Consensus 461 A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~l~~~~~--~~g 526 (558)
|+..|++..+....... ..|..+..++...|++++|...+++.++. .|+. ..+..++.+|. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 88888888875322211 15667777888888888888888887753 3431 23444556664 456
Q ss_pred CHHHHHHHHHHHHHhcCCchhhhhh
Q 008633 527 KLESAYNLFRKIKIARQNDYARRLW 551 (558)
Q Consensus 527 ~~~~A~~~~~~m~~~~~~~~~~~~~ 551 (558)
++++|.+.++++. .+.|....+|
T Consensus 255 ~~~~A~~~~~~~~--~l~~~~~~~~ 277 (292)
T 1qqe_A 255 QLSEHCKEFDNFM--RLDKWKITIL 277 (292)
T ss_dssp THHHHHHHHTTSS--CCCHHHHHHH
T ss_pred HHHHHHHHhccCC--ccHHHHHHHH
Confidence 7888888776664 3444444333
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.02 E-value=7.6e-08 Score=89.59 Aligned_cols=10 Identities=0% Similarity=0.016 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 008633 495 NAVLVMEESL 504 (558)
Q Consensus 495 ~A~~~~~~m~ 504 (558)
+|.+++.++.
T Consensus 271 ~a~~l~~qL~ 280 (310)
T 3mv2_B 271 DTEDLTNQLV 280 (310)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=2.5e-08 Score=81.37 Aligned_cols=129 Identities=9% Similarity=0.035 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008633 165 SYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLC 244 (558)
Q Consensus 165 ~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~ 244 (558)
+|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|.+.++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45556666666666666666666665543 2345556666666666666666666666665543 224445555555555
Q ss_pred hcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 245 QRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVA 295 (558)
Q Consensus 245 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (558)
..|++++|.+.++++....+.+...+..++..+.+.|++++|...++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 556666666655555444444455555555555555555555555555544
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=2.7e-08 Score=81.12 Aligned_cols=127 Identities=18% Similarity=0.286 Sum_probs=53.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008633 271 NIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISV 350 (558)
Q Consensus 271 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 350 (558)
..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|.+.++++.+.+.. +...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHh
Confidence 333444444444444444444443322 112333334444444444444444444444433211 333444444444444
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 351 GDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 351 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
|++++|.++++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 44444444444444332 22334444444444444455555444444443
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.97 E-value=2.2e-07 Score=86.52 Aligned_cols=144 Identities=15% Similarity=0.136 Sum_probs=70.9
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 252 ASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFS-PDSLTFSFLIEGLGRAGRIDDAIEVFDTMKE 330 (558)
Q Consensus 252 A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 330 (558)
|...|++.....+++..++..+..++...|++++|++++.+....|.. -+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 455555544333334444455556666666666666666655444321 1334455555556666666666666666554
Q ss_pred CCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 331 KGCGP-----DTNAYNAVISN--YISVG--DFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEML 399 (558)
Q Consensus 331 ~g~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (558)
. .| +..+...|..+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4 22 12333333333 22222 566666666665443 2332222333335555566666666655443
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.94 E-value=5.3e-08 Score=90.26 Aligned_cols=188 Identities=8% Similarity=0.026 Sum_probs=117.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC-C-CCHH
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPD---LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGL-K-FDAE 234 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~---~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~-~~~~ 234 (558)
+.+...+-.+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++.+.|++++|+..|+++.+... . ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456677777888888899999999998888763 223 66778888888888999999998888887532 1 1245
Q ss_pred HHHHHHHHHHh--------cCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008633 235 SLNVVLWCLCQ--------RLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFS 306 (558)
Q Consensus 235 ~~~~ll~~~~~--------~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 306 (558)
.+..+..++.. .|++++|...|+++....|.+...+..+.... .+... -...+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~--------------~~~~~----~~~~~~ 152 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIR--------------ELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHH--------------HHHHH----HHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHH--------------HHHHH----HHHHHH
Confidence 66677777777 88888888888887665554444442221110 00000 001133
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHhhhC
Q 008633 307 FLIEGLGRAGRIDDAIEVFDTMKEKGCGP--DTNAYNAVISNYISV----------GDFDECMKYYKGMSSY 366 (558)
Q Consensus 307 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 366 (558)
.+...+.+.|++++|...|+.+.+..... ....+..+..+|... |++++|...|+++.+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 44555666666666666666665543221 233455555556544 6666666666666654
No 94
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.93 E-value=8.2e-07 Score=83.42 Aligned_cols=228 Identities=8% Similarity=0.054 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH----Hhc---CCHH
Q 008633 319 DDAIEVFDTMKEKGCGPDTNAYNAVISNYISVG--DFDECMKYYKGMSSYNCEPNMDTYTRLISGL----LKS---RKVA 389 (558)
Q Consensus 319 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~----~~~---g~~~ 389 (558)
++|+++.+.++..... +..+|+.--..+...| ++++++++++.+...+ +.+..+|+.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 3555555555555433 4445555555555555 6666666666665543 33444444433333 333 5566
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC------hhHH
Q 008633 390 DALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPH--AAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGK------CGML 461 (558)
Q Consensus 390 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~~A 461 (558)
+++++++.+.+.. +-+...++.-.-.+...|.++ ++++.++++.+.+ .-+...|+.-...+...++ ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 6666666666543 234444444444445555555 6666666666654 3455555555555555555 7888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 462 LDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLEN-AVLVMEESLRKG--FCPSRLVYSKLSNKLLASNKLESAYNLFRKI 538 (558)
Q Consensus 462 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 538 (558)
++.++.+.... +-|...|+.+...+.+.|+..+ +..+.+++.+.+ -..+...+..++++|.+.|+.++|.++++++
T Consensus 206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 88888888765 5578889888888888887544 555666665432 1346788889999999999999999999998
Q ss_pred HHhcCCchhhhhhc
Q 008633 539 KIARQNDYARRLWR 552 (558)
Q Consensus 539 ~~~~~~~~~~~~~~ 552 (558)
.+ ...|....||.
T Consensus 285 ~~-~~Dpir~~yW~ 297 (306)
T 3dra_A 285 KS-KYNPIRSNFWD 297 (306)
T ss_dssp HH-TTCGGGHHHHH
T ss_pred Hh-ccChHHHHHHH
Confidence 63 36777778885
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.93 E-value=5.6e-08 Score=90.11 Aligned_cols=182 Identities=12% Similarity=0.076 Sum_probs=107.9
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCC---CChhhH
Q 008633 197 DLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFD---AESLNVVLWCLCQRLHVGAASSLFNSMKGKVL---FNVMTY 270 (558)
Q Consensus 197 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~---~~~~~~ 270 (558)
+...+-.....+.+.|++++|++.|+++.+.... + ...+..+..+|.+.|++++|...|++.....| ....++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4556666666666777777777777777654321 2 45566666667777777777777766654322 123445
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 008633 271 NIVISGWSK--------LGQVVEMERVLKEIVAEGFSPDS-LTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYN 341 (558)
Q Consensus 271 ~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 341 (558)
..+..++.. .|++++|...|++..+.. |+. .....+. .+..+... ....+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~--------------~~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQ--------------KIRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHH--------------HHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHH--------------HHHHHHHH----HHHHHH
Confidence 566666666 666666666666666542 221 1111110 00000000 011235
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHC
Q 008633 342 AVISNYISVGDFDECMKYYKGMSSYNCEPN----MDTYTRLISGLLKS----------RKVADALEVFEEMLDR 401 (558)
Q Consensus 342 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 401 (558)
.+...|.+.|++++|+..|+++.+.. |+ ...+..+..+|... |++++|...++++.+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 56778888888888888888887642 32 34566777777755 7788888888888775
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.89 E-value=9.7e-08 Score=85.13 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=24.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 239 VLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVA 295 (558)
Q Consensus 239 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (558)
+..+|.+.|++++|...|++.....|.+...|..+...+...|++++|...|++..+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444444333333444444444444444444444444444443
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.88 E-value=1.2e-07 Score=84.61 Aligned_cols=135 Identities=15% Similarity=0.077 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008633 270 YNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYIS 349 (558)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 349 (558)
++.+...+.+.|++++|+..|++..+.. +-+...+..+...+...|++++|...|++..+.... +..++..+..+|..
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 3447778888888888888888887764 235677777888888888888888888888777544 66777777777765
Q ss_pred cCC--HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 008633 350 VGD--FDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTI 410 (558)
Q Consensus 350 ~g~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 410 (558)
.|+ .+.+...++..... .|....+..+..++...|++++|+..|++..+. .|+....
T Consensus 135 ~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~ 193 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSSP--TKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQ 193 (208)
T ss_dssp HHHHHHHHHHHHHC---CC--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHH
T ss_pred HhHHHHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHH
Confidence 543 34455555555421 222233444455566677888888888877764 4665433
No 98
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.86 E-value=7.5e-08 Score=91.68 Aligned_cols=184 Identities=10% Similarity=-0.020 Sum_probs=97.4
Q ss_pred HHHhcCCHHHHHHHHHHhhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHH
Q 008633 346 NYISVGDFDECMKYYKGMSSY----NCEP-NMDTYTRLISGLLKSRKVADALEVFEEMLDRG---IVPS--TGTITSFLE 415 (558)
Q Consensus 346 ~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~--~~~~~~ll~ 415 (558)
.|...|++++|.+.|.+..+. +-.. -..+|+.+...|...|++++|+..|++..+.- -.+. ..++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444455555555555544321 1000 12344555555555566666655555543210 0111 234445555
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHcCCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHH
Q 008633 416 PLCSYGPPHAAMMMYKKARKVGCKL-----SLTAYKLLLRRLSGFGKCGMLLDLWHEMQES----GYPSD-GEIYEYVIA 485 (558)
Q Consensus 416 ~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~ 485 (558)
.|.. |++++|+..|++..+..... ...++..+...|...|++++|+..|++..+. +..+. ...+..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 5555 67777776666655421000 1355666777777788888888777776642 21111 125555666
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHH
Q 008633 486 GLCNIGQLENAVLVMEESLRKGFCPS------RLVYSKLSNKLLASNKLESAYNL 534 (558)
Q Consensus 486 ~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~l~~~~~~~g~~~~A~~~ 534 (558)
++...|++++|...+++.+ . .|+ ......++.++ ..|+.+.+.++
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 6667788888888888877 3 232 12344455544 56776666553
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.86 E-value=2.1e-06 Score=80.59 Aligned_cols=223 Identities=7% Similarity=-0.009 Sum_probs=159.6
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc-
Q 008633 174 GRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAG--QVYKAIQMLGRLEDFGLKFDAESLNVVLWCL----CQR- 246 (558)
Q Consensus 174 ~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~----~~~- 246 (558)
.+....++|+.+++.+.... +-+..+|+.--..+...| ++++++++++.+.....+ +..+|+.--..+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 33444568888888888764 224556777667777777 888888888888876533 445565554444 444
Q ss_pred --CCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----
Q 008633 247 --LHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVV--EMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGR----- 317 (558)
Q Consensus 247 --~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~----- 317 (558)
+++++++++++.+....|-|..+|+.-.-.+.+.|.++ ++++.++++.+... -|...|+.-...+.+.++
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhh
Confidence 67888888888887777778888888887788888877 88888888887653 366777766666666665
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 318 -IDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDF-DECMKYYKGMSSYN--CEPNMDTYTRLISGLLKSRKVADALE 393 (558)
Q Consensus 318 -~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~ 393 (558)
++++++.++.++...+. |...|+.+...+.+.|+. +.+..+..++.+.+ -..+...+..+...|.+.|+.++|.+
T Consensus 201 ~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 77888888888877655 778888888888777774 33555666655432 13466777788888888888888888
Q ss_pred HHHHHHH
Q 008633 394 VFEEMLD 400 (558)
Q Consensus 394 ~~~~m~~ 400 (558)
+++.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8888775
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.85 E-value=2.5e-08 Score=105.98 Aligned_cols=173 Identities=12% Similarity=0.003 Sum_probs=122.4
Q ss_pred HHhCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhc
Q 008633 209 IRAGQVYKAIQMLGRLE--------DFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKL 280 (558)
Q Consensus 209 ~~~g~~~~A~~~~~~~~--------~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~ 280 (558)
...|++++|++.++++. +.. +.+...+..+..+|.+.|++++|.+.|++.....|.+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 56788888888888877 322 335567777777888888888888888877665566777888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008633 281 GQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYY 360 (558)
Q Consensus 281 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 360 (558)
|++++|.+.|++..+.. +-+...|..+..++.+.|++++ .+.|++..+.... +...|..+..+|.+.|++++|++.|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888877653 2245667777777788888888 8888887776544 6667777888888888888888888
Q ss_pred HHhhhCCCCCC-HHHHHHHHHHHHhcCC
Q 008633 361 KGMSSYNCEPN-MDTYTRLISGLLKSRK 387 (558)
Q Consensus 361 ~~m~~~~~~p~-~~~~~~li~~~~~~g~ 387 (558)
++..+. .|+ ...|..+..++...++
T Consensus 558 ~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTT--STTHHHHHHHHHHHTC----
T ss_pred Hhhccc--CcccHHHHHHHHHHHHccCC
Confidence 877765 343 4566666666655444
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.83 E-value=9.8e-07 Score=78.78 Aligned_cols=176 Identities=10% Similarity=-0.030 Sum_probs=92.2
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHH
Q 008633 356 CMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYG----PPHAAMMMYK 431 (558)
Q Consensus 356 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~ 431 (558)
|.+.|++..+.| +...+..+...|...+++++|+..|++..+.| +...+..+...|.. + +.++|..+|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 344444444432 34444444444444555555555555544433 23333333333333 3 4555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHhHHHHHHHH
Q 008633 432 KARKVGCKLSLTAYKLLLRRLSG----FGKCGMLLDLWHEMQESGYP-SDGEIYEYVIAGLCN----IGQLENAVLVMEE 502 (558)
Q Consensus 432 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~~ 502 (558)
+..+.+ +...+..|...|.. .+++++|++.|++..+.|.. .+...+..|...|.. .++.++|+.+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554443 34444555555554 56666666666666655411 014556666666666 5667777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHhcC
Q 008633 503 SLRKGFCPSRLVYSKLSNKLLAS-N-----KLESAYNLFRKIKIARQ 543 (558)
Q Consensus 503 m~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 543 (558)
..+. ..+...+..|...|... | +.++|.+++++..+.|.
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7665 12334555666666543 2 67777777777666543
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.82 E-value=6.3e-08 Score=102.88 Aligned_cols=186 Identities=10% Similarity=-0.017 Sum_probs=153.2
Q ss_pred HhcCChHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008633 174 GRRKFFDFMCNVLSDMA--------KEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQ 245 (558)
Q Consensus 174 ~~~~~~~~a~~l~~~m~--------~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 245 (558)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|++.++++.+.. +.+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 78899999999999998 432 4467889999999999999999999999999764 3377899999999999
Q ss_pred cCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008633 246 RLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVF 325 (558)
Q Consensus 246 ~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 325 (558)
.|++++|.+.|++.....|.+...|..+..++.+.|++++ ++.|++..+.. +-+...|..+..++.+.|++++|.+.|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999987777789999999999999999999 99999998864 336778999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHhh
Q 008633 326 DTMKEKGCGPDTNAYNAVISNYISVGD--------FDECMKYYKGMS 364 (558)
Q Consensus 326 ~~m~~~g~~p~~~~~~~li~~~~~~g~--------~~~A~~~~~~m~ 364 (558)
+++.+.... +...+..+..++...++ +++|.+.+..+.
T Consensus 558 ~~al~l~P~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 558 DEVPPTSRH-FTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HTSCTTSTT-HHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HhhcccCcc-cHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 998876433 46677778888766554 555555555443
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.81 E-value=6e-07 Score=81.05 Aligned_cols=188 Identities=9% Similarity=-0.047 Sum_probs=126.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC-CH-HHHH
Q 008633 162 DVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVN-P-DLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKF-DA-ESLN 237 (558)
Q Consensus 162 ~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~-~-~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~-~~~~ 237 (558)
+...+..+...+.+.|++++|+..|+++.+.... + ....+..+..++.+.|++++|++.|+++.+..... .. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455666777888999999999999999875321 1 14578888899999999999999999988754321 11 2344
Q ss_pred HHHHHHHh------------------cCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008633 238 VVLWCLCQ------------------RLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFS 299 (558)
Q Consensus 238 ~ll~~~~~------------------~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 299 (558)
.+..++.+ .|+.++|...|+++....|-+...+........ +...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~----------~~~~~~----- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF----------LKDRLA----- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH----------HHHHHH-----
Confidence 44444443 456777777777777665555544433221110 000000
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 008633 300 PDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPD--TNAYNAVISNYISVGDFDECMKYYKGMSSYN 367 (558)
Q Consensus 300 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 367 (558)
.....+...+.+.|++++|...|+.+.+...... ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus 148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1123456778889999999999999988743311 2467788899999999999999999888764
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.81 E-value=4.5e-07 Score=81.03 Aligned_cols=175 Identities=13% Similarity=0.095 Sum_probs=102.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 008633 321 AIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSR----KVADALEVFE 396 (558)
Q Consensus 321 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~A~~~~~ 396 (558)
|.+.|++..+.| +...+..|...|...+++++|.++|++..+.| +...+..|...|.. + ++++|...|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444555555443 44555555566666666666666666665543 34445555555554 4 5666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHc----CCChhHHHHHHHH
Q 008633 397 EMLDRGIVPSTGTITSFLEPLCS----YGPPHAAMMMYKKARKVGCK-LSLTAYKLLLRRLSG----FGKCGMLLDLWHE 467 (558)
Q Consensus 397 ~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~ 467 (558)
+..+.| +...+..+...|.. .+++++|+.+|++..+.+.. .....+..|...|.. .++.++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 665543 33444444444444 55666666666666655421 114556666666666 6677778888777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-C-----CHhHHHHHHHHHHhCC
Q 008633 468 MQESGYPSDGEIYEYVIAGLCNI-G-----QLENAVLVMEESLRKG 507 (558)
Q Consensus 468 m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g 507 (558)
..+. ..+...+..|...|... | +.++|..++++..+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7765 22444566666666543 2 7888888888877766
No 105
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.80 E-value=2.6e-05 Score=78.99 Aligned_cols=343 Identities=8% Similarity=-0.061 Sum_probs=201.2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHh-CCCC-CCHHHHHHHHHHHH----hcCCH
Q 008633 177 KFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQ-VYKAIQMLGRLED-FGLK-FDAESLNVVLWCLC----QRLHV 249 (558)
Q Consensus 177 ~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~-~~~A~~~~~~~~~-~g~~-~~~~~~~~ll~~~~----~~~~~ 249 (558)
|+++.+..+|++.... .|+...|..-+....+.+. .+....+|+.+.. .|.. .+...|...+..+. ..+++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 6677777777777664 3577777777766666553 3445566666553 2432 24556666665543 23456
Q ss_pred hHHHHHHHHhhcCCCCC-h-hhHHHHHHHHH-------------hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008633 250 GAASSLFNSMKGKVLFN-V-MTYNIVISGWS-------------KLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGR 314 (558)
Q Consensus 250 ~~A~~~~~~m~~~~~~~-~-~~~~~li~~~~-------------~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 314 (558)
+.+.++|++... .|+. . ..|......-. ..+.+..|..+++++...--..+...|...+.--..
T Consensus 106 ~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 106 EKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 677777777655 2221 1 11111111000 012233344444444321000123345444443222
Q ss_pred cC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 315 AG--R-----IDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRK 387 (558)
Q Consensus 315 ~g--~-----~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 387 (558)
.+ - .+.+..+|+++.... +-+...|-..+..+.+.|+.++|.++|++.... +.+...|. .|....+
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e 257 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMD 257 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTT
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcc
Confidence 11 1 345678888888764 346778888888888999999999999999886 33333332 2222222
Q ss_pred HHHHHHHHHHHHHC---------CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 008633 388 VADALEVFEEMLDR---------GIVP---STGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGF 455 (558)
Q Consensus 388 ~~~A~~~~~~m~~~---------~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 455 (558)
.++. ++.+.+. +..+ ....|...+....+.++.+.|..+|+++ +.. ..+...|......-...
T Consensus 258 ~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~ 332 (493)
T 2uy1_A 258 EEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA 332 (493)
T ss_dssp CTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH
T ss_pred hhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH
Confidence 2222 2222211 0011 1244566666666678899999999999 322 23445554333222222
Q ss_pred -CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008633 456 -GKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNL 534 (558)
Q Consensus 456 -g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 534 (558)
++.+.|..+|+...+.- +-+...|...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+
T Consensus 333 ~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v 406 (493)
T 2uy1_A 333 TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFREL 406 (493)
T ss_dssp HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 36999999999988742 3345567778888888999999999999872 2478888888877888999999998
Q ss_pred HHHHHH
Q 008633 535 FRKIKI 540 (558)
Q Consensus 535 ~~~m~~ 540 (558)
+++...
T Consensus 407 ~~~~~~ 412 (493)
T 2uy1_A 407 VDQKMD 412 (493)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888765
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.80 E-value=3.4e-08 Score=82.92 Aligned_cols=120 Identities=9% Similarity=-0.033 Sum_probs=59.0
Q ss_pred HhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 244 CQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIE 323 (558)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 323 (558)
...|++++|++.++......|.+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|..
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHH
Confidence 334455555555555443333334444455555555555555555555555432 1234455555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHhhh
Q 008633 324 VFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKY-YKGMSS 365 (558)
Q Consensus 324 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~ 365 (558)
.|++..+.... +..++..+...|.+.|++++|.+. +++..+
T Consensus 87 ~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 87 CYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 55555554322 444555555555555555443332 344443
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.80 E-value=7.8e-08 Score=83.15 Aligned_cols=156 Identities=10% Similarity=0.011 Sum_probs=70.4
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCH
Q 008633 240 LWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEG-LGRAGRI 318 (558)
Q Consensus 240 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~ 318 (558)
...+.+.|++++|...|++.....|.+...+..+...+.+.|++++|...+++..... |+...+..+... +...+..
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~ 90 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAE 90 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhccc
Confidence 3344444555555555544433333344555555555555555555555555443322 122221111101 1111111
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 319 DDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEP-NMDTYTRLISGLLKSRKVADALEVFEE 397 (558)
Q Consensus 319 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 397 (558)
.+|...+++..+.... +...+..+..++...|++++|...|+++.+..-.+ +...+..+...+...|+.++|...|++
T Consensus 91 ~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 91 SPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp CHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred chHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 2344455555444322 44555555555555555555555555555442111 133455555555555555555555554
Q ss_pred H
Q 008633 398 M 398 (558)
Q Consensus 398 m 398 (558)
.
T Consensus 170 a 170 (176)
T 2r5s_A 170 Q 170 (176)
T ss_dssp H
T ss_pred H
Confidence 3
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.80 E-value=1.1e-07 Score=89.52 Aligned_cols=164 Identities=13% Similarity=0.047 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHH
Q 008633 197 DLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISG 276 (558)
Q Consensus 197 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~ 276 (558)
+...+..+...+...|++++|++.|+++.+.. +-+...+..+...+.+.|++++|...++++....|.+..........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 34455555555556666666666666655443 12444555555555555555555555555543322111122222222
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 008633 277 WSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGP-DTNAYNAVISNYISVGDFDE 355 (558)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~ 355 (558)
+.+.++.++|...+++..... +.+...+..+...+...|++++|...+.++.+..... +...+..++..|...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 334444444555554444432 1233444444445555555555555555544442221 13344444444444444444
Q ss_pred HHHHHHH
Q 008633 356 CMKYYKG 362 (558)
Q Consensus 356 A~~~~~~ 362 (558)
|...|++
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.79 E-value=1.6e-07 Score=97.82 Aligned_cols=155 Identities=9% Similarity=-0.056 Sum_probs=89.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 008633 176 RKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSL 255 (558)
Q Consensus 176 ~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~ 255 (558)
.|++++|...+++..+.. +.+...+..+...+...|++++|++.+++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 356677777777666542 2346667777777777777777777777776653 22456666677777777777777777
Q ss_pred HHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCC
Q 008633 256 FNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRA---GRIDDAIEVFDTMKEKG 332 (558)
Q Consensus 256 ~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---g~~~~a~~~~~~m~~~g 332 (558)
|++.....+.+...|..+...+.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+.+
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 776655555566667777777777777777777777766643 22455666666666666 67777777776666654
Q ss_pred C
Q 008633 333 C 333 (558)
Q Consensus 333 ~ 333 (558)
.
T Consensus 159 p 159 (568)
T 2vsy_A 159 V 159 (568)
T ss_dssp C
T ss_pred C
Confidence 3
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.78 E-value=1.9e-07 Score=87.86 Aligned_cols=167 Identities=11% Similarity=0.021 Sum_probs=115.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHH-
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNV- 238 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~- 238 (558)
+.+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+.+.|++++|.+.++++.... |+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3445666777777778888888888888777653 3356777777788888888888888887776543 34433222
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCC
Q 008633 239 VLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFS-PDSLTFSFLIEGLGRAGR 317 (558)
Q Consensus 239 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~ 317 (558)
....+.+.++.+.|...+++.....|.+...+..+...+...|++++|...|+++.+.... .+...+..+...+...|+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 2233556677777777777776666667778888888888888888888888887775322 125567777777777888
Q ss_pred HHHHHHHHHHHH
Q 008633 318 IDDAIEVFDTMK 329 (558)
Q Consensus 318 ~~~a~~~~~~m~ 329 (558)
.++|...+++..
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 777777776654
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.77 E-value=2.2e-07 Score=96.74 Aligned_cols=154 Identities=7% Similarity=-0.097 Sum_probs=101.6
Q ss_pred hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 008633 211 AGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVL 290 (558)
Q Consensus 211 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 290 (558)
.|++++|++.++++.+.. +.+...+..+...|.+.|++++|.+.|++.....+.+...|..+...|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467788888888777653 2356777778888888888888888888877766667777888888888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHhhhCC
Q 008633 291 KEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISV---GDFDECMKYYKGMSSYN 367 (558)
Q Consensus 291 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~ 367 (558)
++..+.. +.+...+..+..++.+.|++++|.+.+++..+.... +...+..+..++... |+.++|.+.+++..+.+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 8877653 234667777777788888888888888877776433 566777777777777 78888888888777654
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.76 E-value=6.7e-07 Score=80.72 Aligned_cols=83 Identities=7% Similarity=-0.061 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChh---hHH
Q 008633 197 DLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLK-F-DAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVM---TYN 271 (558)
Q Consensus 197 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~---~~~ 271 (558)
+...+..+...+.+.|++++|++.|+++.+.... + ....+..+..+|.+.|++++|...|+++....|.+.. ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455556667777888888888888887764322 1 1356667777778888888888888777654443332 344
Q ss_pred HHHHHHHh
Q 008633 272 IVISGWSK 279 (558)
Q Consensus 272 ~li~~~~~ 279 (558)
.+..++.+
T Consensus 83 ~~g~~~~~ 90 (225)
T 2yhc_A 83 MRGLTNMA 90 (225)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444443
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.75 E-value=1.3e-07 Score=81.83 Aligned_cols=156 Identities=13% Similarity=0.037 Sum_probs=64.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhc
Q 008633 168 VIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWC-LCQR 246 (558)
Q Consensus 168 ~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~-~~~~ 246 (558)
.....+.+.|++++|...|++..+.. +.+...+..+...+...|++++|++.++++.+.. |+...+..+... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence 34444555555555555555544432 2244455555555555555555555555554332 122222111111 1111
Q ss_pred CCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 008633 247 LHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSP-DSLTFSFLIEGLGRAGRIDDAIEVF 325 (558)
Q Consensus 247 ~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~ 325 (558)
+....|...|++.....|.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 112223444444333333344444444444444444444444444444332111 1223334444444444444444444
Q ss_pred H
Q 008633 326 D 326 (558)
Q Consensus 326 ~ 326 (558)
+
T Consensus 168 ~ 168 (176)
T 2r5s_A 168 R 168 (176)
T ss_dssp H
T ss_pred H
Confidence 3
No 114
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.70 E-value=6.7e-08 Score=81.13 Aligned_cols=139 Identities=7% Similarity=-0.104 Sum_probs=76.5
Q ss_pred HhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 008633 210 RAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERV 289 (558)
Q Consensus 210 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 289 (558)
..|++++|++.++...... +-+...+-.+...|.+.|++++|.+.|++.....|-+..+|..+..+|.+.|++++|+..
T Consensus 9 ~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 3455566666555554421 112233445555666666666666666665554455666666666666666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008633 290 LKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEV-FDTMKEKGCGPDTNAYNAVISNYISVG 351 (558)
Q Consensus 290 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~-~~~m~~~g~~p~~~~~~~li~~~~~~g 351 (558)
|++..+.. +-+...|..+...+.+.|+.++|.+. +++..+..+. +..+|......+...|
T Consensus 88 ~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 88 YRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 66666542 12355566666666666666554433 3555554332 4555555555555444
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.68 E-value=3.4e-06 Score=79.51 Aligned_cols=127 Identities=12% Similarity=0.063 Sum_probs=61.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCC-CHHHHH
Q 008633 273 VISGWSKLGQVVEMERVLKEIVAEGFS-PD----SLTFSFLIEGLGRAGRIDDAIEVFDTMKEK-----GCGP-DTNAYN 341 (558)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~~p-~~~~~~ 341 (558)
+...+...|++++|+..+++..+.... ++ ..+++.+...|...|++++|...++++.+. +..+ ...++.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 444444445555555555555542111 11 123555555555555555555555555421 1111 122455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhC----CCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 008633 342 AVISNYISVGDFDECMKYYKGMSSY----NCEPN-MDTYTRLISGLLKSR-KVADALEVFEEML 399 (558)
Q Consensus 342 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g-~~~~A~~~~~~m~ 399 (558)
.+...|.+.|++++|.+.+++..+. +..+. ..+|..+..+|.+.| ++++|.+.+++..
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 5566666666666666666555421 11111 345555556666666 3466665555543
No 116
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.68 E-value=1.1e-05 Score=76.48 Aligned_cols=244 Identities=11% Similarity=0.052 Sum_probs=132.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-C
Q 008633 276 GWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAG-RIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISV-G-D 352 (558)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~ 352 (558)
...+.+..++|+++++++.... +-+...|+.--..+...| .+++++++++.+.....+ +..+|+.-...+.+. + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCC
Confidence 3344444556666666666643 123344555555555555 366666666666665444 555666555555554 4 5
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008633 353 FDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKK 432 (558)
Q Consensus 353 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 432 (558)
+++++++++++.+.. +.|..+|+--...+.+.|.++. .+. ..+.++++.+++
T Consensus 141 ~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~--------------~~~-------------~~~~eELe~~~k 192 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGR--------------ISE-------------AQWGSELDWCNE 192 (349)
T ss_dssp CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTC--------------CCH-------------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccc--------------cch-------------hhHHHHHHHHHH
Confidence 666666666666543 4455555544444444333330 000 001144444444
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCC-------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH------------
Q 008633 433 ARKVGCKLSLTAYKLLLRRLSGFGK-------CGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQL------------ 493 (558)
Q Consensus 433 ~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~------------ 493 (558)
+.+.+ .-|...|+.....+.+.++ ++++++.++++.... +-|...|+.+-..+.+.|+.
T Consensus 193 ~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~ 270 (349)
T 3q7a_A 193 MLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYT 270 (349)
T ss_dssp HHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGT
T ss_pred HHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccc
Confidence 44433 2344444444444444443 466666666666543 44666666666666655543
Q ss_pred --------hHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchhhhhhc
Q 008633 494 --------ENAVLVMEESLRKG-----FCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQNDYARRLWR 552 (558)
Q Consensus 494 --------~~A~~~~~~m~~~g-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 552 (558)
.+...+..++...+ -.++...+..|++.|...|+.++|.++++.+.+ ...|-...||.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~-~~dpir~~yw~ 341 (349)
T 3q7a_A 271 ASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS-EYDQMRAGYWE 341 (349)
T ss_dssp C--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCGGGHHHHH
T ss_pred cccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hhChHHHHHHH
Confidence 22333333332221 135678888899999999999999999999753 56777777774
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.68 E-value=8.1e-07 Score=84.45 Aligned_cols=124 Identities=11% Similarity=-0.045 Sum_probs=55.1
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcC----CCC--ChhhHHHH
Q 008633 205 MDSFIRAGQVYKAIQMLGRLEDF----GLK-FDAESLNVVLWCLCQRLHVGAASSLFNSMKGK----VLF--NVMTYNIV 273 (558)
Q Consensus 205 i~~~~~~g~~~~A~~~~~~~~~~----g~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~~~--~~~~~~~l 273 (558)
...|...|++++|.+.|.+..+. |-. .-..+|+.+..+|.+.|++++|...|++.... ..+ -..+++.+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555556666666666554431 100 01234555555555555555555555543210 001 12344445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 274 ISGWSKLGQVVEMERVLKEIVAE----GFSP-DSLTFSFLIEGLGRAGRIDDAIEVFDTMK 329 (558)
Q Consensus 274 i~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 329 (558)
...|.. |++++|+..|++..+. |-.. ...++..+...+.+.|++++|...|++..
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555544 5555555555544431 1000 02334444444444455555554444443
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.66 E-value=4.4e-06 Score=78.69 Aligned_cols=163 Identities=9% Similarity=0.005 Sum_probs=113.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHH
Q 008633 378 LISGLLKSRKVADALEVFEEMLDRGI-VPSTG----TITSFLEPLCSYGPPHAAMMMYKKARKVGCK-LS----LTAYKL 447 (558)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 447 (558)
.+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|+..++++.+.... .+ ..+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 45667777888888888887766421 12211 2233455555667888888888888763221 22 346788
Q ss_pred HHHHHHcCCChhHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC----CCCCC-HHHHH
Q 008633 448 LLRRLSGFGKCGMLLDLWHEMQE----S-GYPSD-GEIYEYVIAGLCNIGQLENAVLVMEESLRK----GFCPS-RLVYS 516 (558)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~ 516 (558)
+...|...|++++|+..++++.+ . +..+. ..+|..+...|.+.|++++|+.+++++++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88888888888888888888773 1 11222 237788888999999999999999988753 22233 67888
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHH
Q 008633 517 KLSNKLLASN-KLESAYNLFRKIKI 540 (558)
Q Consensus 517 ~l~~~~~~~g-~~~~A~~~~~~m~~ 540 (558)
.+..+|.+.| .+++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999999 46999998888764
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.66 E-value=4.7e-06 Score=78.48 Aligned_cols=126 Identities=10% Similarity=-0.016 Sum_probs=65.2
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhcCC----CCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH---c-CCCC--CHHHHH
Q 008633 239 VLWCLCQRLHVGAASSLFNSMKGKV----LFN--VMTYNIVISGWSKLGQVVEMERVLKEIVA---E-GFSP--DSLTFS 306 (558)
Q Consensus 239 ll~~~~~~~~~~~A~~~~~~m~~~~----~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~-g~~p--~~~t~~ 306 (558)
+...+...|++++|...+++..... .+. ..+|+.+...|...|++++|...|++..+ . +..+ ...++.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 3344444555555555555443210 011 23556666666666666666666665542 1 1111 113555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHhh
Q 008633 307 FLIEGLGRAGRIDDAIEVFDTMKEK----GCGP-DTNAYNAVISNYISVGDFDEC-MKYYKGMS 364 (558)
Q Consensus 307 ~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 364 (558)
.+...|.+.|++++|.+.+++..+. +... -..+|..+..+|.+.|++++| ...+++..
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6666666666666666666655432 1111 144566666677777777666 55555543
No 120
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.66 E-value=3.3e-05 Score=73.29 Aligned_cols=230 Identities=9% Similarity=-0.013 Sum_probs=141.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008633 167 NVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAG-QVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQ 245 (558)
Q Consensus 167 ~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 245 (558)
+.+-..+.+.+..++|+++++++.... +-+..+|+.--..+...| .+++++++++.+.....+ +..+|+.-..++.+
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 333334444555667888888887764 225556666666666677 488888888888876533 66777777666666
Q ss_pred c-C-CHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008633 246 R-L-HVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVV--------EMERVLKEIVAEGFSPDSLTFSFLIEGLGRA 315 (558)
Q Consensus 246 ~-~-~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 315 (558)
. + +.++++++++.+....+-|..+|+.-.-.+.+.|.++ ++++.++++.+... -|...|+.....+.+.
T Consensus 136 l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTS
T ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence 5 6 7778888888887776777777777666665555555 77777777777643 3666677666666666
Q ss_pred CC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHhhhCC-
Q 008633 316 GR-------IDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDF--------------------DECMKYYKGMSSYN- 367 (558)
Q Consensus 316 g~-------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~~~- 367 (558)
++ ++++++.+++++...+. |...|+-+-..+.+.|+. .+..++..++...+
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPL 293 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CC
T ss_pred cccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccc
Confidence 55 56777777777766544 667776666666555542 22233333332211
Q ss_pred ----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 368 ----CEPNMDTYTRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 368 ----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
-.++......++..|...|+.++|.++++.+.+
T Consensus 294 ~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 294 PEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 024455555566666666666666666666543
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.63 E-value=2.1e-06 Score=76.36 Aligned_cols=124 Identities=10% Similarity=-0.087 Sum_probs=58.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008633 272 IVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVG 351 (558)
Q Consensus 272 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 351 (558)
.+...+...|++++|...|++.. .|+...+..+...+.+.|++++|.+.+++..+.... +...+..+..+|...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcc
Confidence 33444444444444444444331 234444444444444455555555554444443221 3444445555555555
Q ss_pred CHHHHHHHHHHhhhCCCCC----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 352 DFDECMKYYKGMSSYNCEP----------------NMDTYTRLISGLLKSRKVADALEVFEEMLDR 401 (558)
Q Consensus 352 ~~~~A~~~~~~m~~~~~~p----------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (558)
++++|.+.|++..+.. +. ....+..+..+|...|++++|...|++..+.
T Consensus 86 ~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 5555555555544421 11 1144555555555555555555555555543
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.62 E-value=2.4e-06 Score=76.01 Aligned_cols=128 Identities=11% Similarity=-0.104 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008633 165 SYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLC 244 (558)
Q Consensus 165 ~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~ 244 (558)
.+..+...+...|++++|...|++.. .|+..++..+...+...|++++|++.+++..+.. +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 45566677778888888888887663 5577788888888888888888888888887654 336677888888888
Q ss_pred hcCCHhHHHHHHHHhhcCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008633 245 QRLHVGAASSLFNSMKGKVLFNV----------------MTYNIVISGWSKLGQVVEMERVLKEIVAEG 297 (558)
Q Consensus 245 ~~~~~~~A~~~~~~m~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 297 (558)
..|++++|.+.|++.....+.+. ..+..+..++.+.|++++|...|++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 88888888888887765444333 677778888888888888888888877653
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.61 E-value=5.2e-06 Score=78.21 Aligned_cols=166 Identities=10% Similarity=0.015 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCC--HH
Q 008633 374 TYTRLISGLLKSRKVADALEVFEEMLDRGIVPST-----GTITSFLEPLCSYGPPHAAMMMYKKARKVGC---KLS--LT 443 (558)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~~ 443 (558)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|+..++++.+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444556666677777777777666654321111 1122334445566777777777777664321 111 34
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC----CCCCC-H
Q 008633 444 AYKLLLRRLSGFGKCGMLLDLWHEMQES-GYPSD-----GEIYEYVIAGLCNIGQLENAVLVMEESLRK----GFCPS-R 512 (558)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~ 512 (558)
+|+.+...|...|++++|+..+++..+. ...|+ ..+|..+...|...|++++|+..+++.++. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6777777788888888888888776621 00112 147777888888888888888888887643 11111 5
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 008633 513 LVYSKLSNKLLASNKLESA-YNLFRKIK 539 (558)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 539 (558)
.+|..+..+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6778888888888888888 66666654
No 124
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.59 E-value=0.00012 Score=74.03 Aligned_cols=343 Identities=11% Similarity=0.005 Sum_probs=207.2
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHH----HhCCHHH
Q 008633 144 EAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKF-FDFMCNVLSDMAKE-GVN-PDLETLSIVMDSFI----RAGQVYK 216 (558)
Q Consensus 144 ~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~l~~~m~~~-g~~-~~~~t~~~li~~~~----~~g~~~~ 216 (558)
+.+...|+-++.. .|++..|...+....+.+. .+....+|+..... |.. .+...|...+..+. ..|+.+.
T Consensus 31 e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 31 RSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp HHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred HHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 4444444444432 3688899888888877663 35566777776654 433 36677777776543 3567888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------------cCCHhHHHHHHHHhhcCCC-CChhhHHHHHHHHHhcC-
Q 008633 217 AIQMLGRLEDFGLKFDAESLNVVLWCLCQ-------------RLHVGAASSLFNSMKGKVL-FNVMTYNIVISGWSKLG- 281 (558)
Q Consensus 217 A~~~~~~~~~~g~~~~~~~~~~ll~~~~~-------------~~~~~~A~~~~~~m~~~~~-~~~~~~~~li~~~~~~g- 281 (558)
+.++|+++.......-...|......-.. ...+..|..+++.+....+ .+...|...+..-...+
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 99999998874322111222222211100 1223334444444432111 13445665555433221
Q ss_pred -C-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 282 -Q-----VVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDE 355 (558)
Q Consensus 282 -~-----~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 355 (558)
- .+.+..+|+++.... +-+...|...+.-+.+.|+.++|.++++..... +.+...+. .|....+.++
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~ 260 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEA 260 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTH
T ss_pred cCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhH
Confidence 1 345678899988753 445777887888888999999999999999988 33433332 2332222222
Q ss_pred H-HHHHHHhhhCC-----C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChh
Q 008633 356 C-MKYYKGMSSYN-----C---EPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTIT--SFLEPLCSYGPPH 424 (558)
Q Consensus 356 A-~~~~~~m~~~~-----~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~g~~~ 424 (558)
. ..+.+...... . ......|...+..+.+.+..+.|..+|... ... ..+...|. +.+... ..++.+
T Consensus 261 ~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~-~~~d~~ 337 (493)
T 2uy1_A 261 VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYY-ATGSRA 337 (493)
T ss_dssp HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHH-HHCCSH
T ss_pred HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHH-HCCChH
Confidence 2 11222111000 0 111245666777777788899999999998 321 23444443 223222 234799
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008633 425 AAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESL 504 (558)
Q Consensus 425 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (558)
.|..+|+...+.. +-+...+...++.....|+.+.|..+|+.+. .....|...+..-...|+.+.+..+++++.
T Consensus 338 ~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 338 TPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999988753 2345556667787888899999999999973 256788888888888899999999999887
Q ss_pred h
Q 008633 505 R 505 (558)
Q Consensus 505 ~ 505 (558)
.
T Consensus 412 ~ 412 (493)
T 2uy1_A 412 D 412 (493)
T ss_dssp H
T ss_pred H
Confidence 4
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.54 E-value=3e-06 Score=71.80 Aligned_cols=129 Identities=12% Similarity=-0.005 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008633 409 TITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLC 488 (558)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 488 (558)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|+..+++..+.. +.+...|..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34445555666677777777777666643 3356677777777888888888888888877653 446778888888888
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 489 NIGQLENAVLVMEESLRKGFCPSRLVYS--KLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
..|++++|...++++.+.. +.+...+. .++..+.+.|++++|.+.+++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8899999999998888753 22344553 344447788899999988887754
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.52 E-value=3.7e-06 Score=71.27 Aligned_cols=94 Identities=9% Similarity=0.084 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008633 270 YNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYIS 349 (558)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 349 (558)
|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence 3333444444444444444444443321 112333444444444444444444444444433211 33344444444444
Q ss_pred cCCHHHHHHHHHHhhh
Q 008633 350 VGDFDECMKYYKGMSS 365 (558)
Q Consensus 350 ~g~~~~A~~~~~~m~~ 365 (558)
.|++++|.+.|++..+
T Consensus 94 ~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 94 LGKFRAALRDYETVVK 109 (166)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 4444444444444443
No 127
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.51 E-value=1.4e-06 Score=70.34 Aligned_cols=95 Identities=14% Similarity=0.098 Sum_probs=55.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008633 444 AYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLL 523 (558)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 523 (558)
.+......|.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..++++++.+ +.+...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 34444555666666666666666655543 3345566666666666666666666666666542 223556666666666
Q ss_pred hcCCHHHHHHHHHHHHH
Q 008633 524 ASNKLESAYNLFRKIKI 540 (558)
Q Consensus 524 ~~g~~~~A~~~~~~m~~ 540 (558)
..|++++|.+.|++..+
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 66666666666666553
No 128
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.51 E-value=1.4e-06 Score=76.81 Aligned_cols=154 Identities=11% Similarity=0.042 Sum_probs=71.7
Q ss_pred cCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHH
Q 008633 246 RLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE----GFSP-DSLTFSFLIEGLGRAGRIDD 320 (558)
Q Consensus 246 ~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~ 320 (558)
.|++++|.++++.+.........++..+...+...|++++|...+++.... |..+ ...++..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 445555555333332221123445555555555556666665555555431 1111 12344455555555556655
Q ss_pred HHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCC-CCHHHHHHHHHHHHhcCCHH
Q 008633 321 AIEVFDTMKEK----GCGP--DTNAYNAVISNYISVGDFDECMKYYKGMSSY----NCE-PNMDTYTRLISGLLKSRKVA 389 (558)
Q Consensus 321 a~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~ 389 (558)
|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..+. +.. .-..++..+...+...|+++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 55555554332 1111 1234555555666666666666666555421 100 01122345555555666666
Q ss_pred HHHHHHHHHH
Q 008633 390 DALEVFEEML 399 (558)
Q Consensus 390 ~A~~~~~~m~ 399 (558)
+|.+.+++..
T Consensus 165 ~A~~~~~~al 174 (203)
T 3gw4_A 165 EAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6665555543
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.50 E-value=4.9e-06 Score=66.35 Aligned_cols=25 Identities=32% Similarity=0.701 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHh
Q 008633 339 AYNAVISNYISVGDFDECMKYYKGM 363 (558)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~~~~~m 363 (558)
++..+...|...|++++|.+.|+++
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 79 AWYNLGNAYYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3333333333344444444444333
No 130
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.50 E-value=1.3e-06 Score=76.97 Aligned_cols=133 Identities=9% Similarity=-0.066 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhc------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC--
Q 008633 233 AESLNVVLWCLCQRLHVGAASSLFNSMKG------KVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE----GFSP-- 300 (558)
Q Consensus 233 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-- 300 (558)
..++..+...+...|++++|...+++... ..+....+++.+...+...|++++|...+++..+. +-.+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 34445555555555555555555554432 11123445666667777777777777777665542 1111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 301 DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEK----GCG-PDTNAYNAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 301 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
....+..+...+...|++++|...+++..+. +.. .-..++..+...+...|++++|.+.+++..+
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1344666667777777777777777766532 111 0123456777888888888888888877653
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.48 E-value=9.8e-06 Score=75.76 Aligned_cols=193 Identities=11% Similarity=-0.004 Sum_probs=117.2
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHH
Q 008633 197 DLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISG 276 (558)
Q Consensus 197 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~ 276 (558)
+...+..+...+.+.|++++|++.|+++.+.. +.+...+..+..+|.+.|++++|...+++.....+.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45566677777777788888888887777653 22667777778888888888888888888777666677888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 277 WSKLGQVVEMERVLKEIVAEGFSPDS-LTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDE 355 (558)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 355 (558)
+...|++++|...|++..+.. |+. ..+...+....+ ..++. -+..........+......+... ..|+.++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 888888888888888776532 110 001111111111 11111 12222233334444444444332 2578888
Q ss_pred HHHHHHHhhhCCCCCCHH-HHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 008633 356 CMKYYKGMSSYNCEPNMD-TYTRLISGLLKS-RKVADALEVFEEMLD 400 (558)
Q Consensus 356 A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~-g~~~~A~~~~~~m~~ 400 (558)
|++.+++..+. .|+.. ....+-..+.+. +.+++|.++|.++.+
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 88888877765 34433 333333334443 567788888877654
No 132
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.47 E-value=4.1e-05 Score=72.29 Aligned_cols=245 Identities=11% Similarity=0.054 Sum_probs=128.8
Q ss_pred hcCCH-HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008633 279 KLGQV-VEMERVLKEIVAEGFSPD-SLTFSFLIEGLGRAGR----------IDDAIEVFDTMKEKGCGPDTNAYNAVISN 346 (558)
Q Consensus 279 ~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~----------~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 346 (558)
+.|.+ ++|+++++.+...+ |+ ...|+.--..+...+. +++++.+++.+...... +..+|+.-..+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 34444 36777777776643 33 3334433222222222 45566666666655443 55566655555
Q ss_pred HHhcC--CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 008633 347 YISVG--DFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRK-VADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPP 423 (558)
Q Consensus 347 ~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 423 (558)
+.+.+ .+++++++++.+.+.. +.|..+|+.-...+...|. ++++++.+.++.+.. +-|...|+.....+...+..
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 55555 3566666666666544 4455666655555555555 456666666666543 23444444333333222110
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CC
Q 008633 424 HAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNI-----------GQ 492 (558)
Q Consensus 424 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------g~ 492 (558)
..+- ..+ . ...+.++++++.++...... +-|...|+.+-..+.+. +.
T Consensus 196 ~~~~-------~~~-~-------------~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~ 253 (331)
T 3dss_A 196 PDSG-------PQG-R-------------LPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTV 253 (331)
T ss_dssp C--------------C-------------CCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHH
T ss_pred cccc-------ccc-c-------------cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHH
Confidence 0000 000 0 00033566667776666543 44566666555444444 45
Q ss_pred HhHHHHHHHHHHhCCCCCCH-HHHHHHH---HHHHhcCCHHHHHHHHHHHHHhcCCchhhhhhccc
Q 008633 493 LENAVLVMEESLRKGFCPSR-LVYSKLS---NKLLASNKLESAYNLFRKIKIARQNDYARRLWRSK 554 (558)
Q Consensus 493 ~~~A~~~~~~m~~~g~~p~~-~~~~~l~---~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 554 (558)
++++++.++++.+. .||. -.+..++ .+....|..+++...+.++. .+.|....+|..+
T Consensus 254 l~~el~~~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 254 LQSELESCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK--AVDPMRAAYLDDL 315 (331)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHH--HHCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHH--HhCcchhhHHHHH
Confidence 77888888888865 4552 2222222 12224677888888888888 5677777777543
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.47 E-value=4.3e-06 Score=69.83 Aligned_cols=99 Identities=8% Similarity=-0.120 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008633 442 LTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNK 521 (558)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 521 (558)
...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|+++++.. +-+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 3455566666777777777777777777653 4456677777777777777777777777777653 2235667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHhc
Q 008633 522 LLASNKLESAYNLFRKIKIAR 542 (558)
Q Consensus 522 ~~~~g~~~~A~~~~~~m~~~~ 542 (558)
|.+.|++++|.+.|++..+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 777777777777777776544
No 134
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.47 E-value=4.8e-06 Score=67.23 Aligned_cols=24 Identities=8% Similarity=0.313 Sum_probs=9.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHh
Q 008633 340 YNAVISNYISVGDFDECMKYYKGM 363 (558)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~~~~~m 363 (558)
|..+..+|...|++++|.+.|++.
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDA 107 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 333333333333333333333333
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.46 E-value=1.1e-06 Score=82.32 Aligned_cols=197 Identities=9% Similarity=-0.011 Sum_probs=134.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVL 240 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 240 (558)
.+...+..+...+.+.|++++|...|++..+.. +.+...|..+...+.+.|++++|++.++++.+.. +.+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 356788889999999999999999999998864 3378899999999999999999999999999865 34678899999
Q ss_pred HHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 241 WCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDD 320 (558)
Q Consensus 241 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 320 (558)
.+|...|++++|...|++.....|.+...+...+....+ ..++.. +..........+......+ ..+ ..|+.++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~ 153 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYL-TRL-IAAERER 153 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHH-HHH-HHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHH-HHH-HHHHHHH
Confidence 999999999999999998754322111111112222111 111111 2223333334444443333 222 3688899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhC
Q 008633 321 AIEVFDTMKEKGCGPDTNAYNAVISNYISV-GDFDECMKYYKGMSSY 366 (558)
Q Consensus 321 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~ 366 (558)
|.+.++...+... .+......+...+.+. +.+++|.++|.++.+.
T Consensus 154 A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhcccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9988888776532 2344444455555555 6788999999988753
No 136
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.46 E-value=6e-06 Score=65.83 Aligned_cols=112 Identities=9% Similarity=0.020 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008633 163 VKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWC 242 (558)
Q Consensus 163 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 242 (558)
...|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455555666666666666666666655542 2344555555555556666666666665555432 2234444555555
Q ss_pred HHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHH
Q 008633 243 LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISG 276 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~ 276 (558)
+...|++++|...|+++....|.+...+..+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 120 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 5555555555555555443333334444433333
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.44 E-value=5.7e-06 Score=66.96 Aligned_cols=26 Identities=15% Similarity=0.335 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhh
Q 008633 339 AYNAVISNYISVGDFDECMKYYKGMS 364 (558)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~~~~~m~ 364 (558)
.+..+..+|.+.|++++|.+.|++..
T Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 86 GYTRKAAALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333444444444444444444333
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.43 E-value=4e-06 Score=67.88 Aligned_cols=120 Identities=5% Similarity=-0.175 Sum_probs=75.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVV 239 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 239 (558)
+.+...|..+...+.+.|++++|...+++..+.. +.+..++..+...+...|++++|++.++++.+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 4456667777777777777777777777776653 2356666777777777777777777777766543 2245566666
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC
Q 008633 240 LWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLG 281 (558)
Q Consensus 240 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g 281 (558)
..++.+.|++++|.+.|++.....+.+...+..+...+.+.|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 666666666666666666655443434455555555554433
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.43 E-value=5.9e-06 Score=66.52 Aligned_cols=94 Identities=12% Similarity=0.089 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008633 270 YNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYIS 349 (558)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 349 (558)
+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.++...+.... +...+..+..+|..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHHH
Confidence 3333344444444444444444433321 112333333444444444444444444444333211 23344444444444
Q ss_pred cCCHHHHHHHHHHhhh
Q 008633 350 VGDFDECMKYYKGMSS 365 (558)
Q Consensus 350 ~g~~~~A~~~~~~m~~ 365 (558)
.|++++|.+.|++..+
T Consensus 93 ~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 4444444444444433
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.43 E-value=2.1e-06 Score=73.99 Aligned_cols=120 Identities=6% Similarity=0.024 Sum_probs=69.6
Q ss_pred hcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCH--HHH
Q 008633 245 QRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEG-LGRAGRI--DDA 321 (558)
Q Consensus 245 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~--~~a 321 (558)
..|++++|...++......|.+...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34556666666665554445566666666666666666666666666666542 1244455555555 5566665 666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 008633 322 IEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSY 366 (558)
Q Consensus 322 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 366 (558)
...++++.+.... +...+..+..+|...|++++|...|+++.+.
T Consensus 101 ~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 6666666655332 4555666666666666666666666666654
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.41 E-value=8.6e-06 Score=65.50 Aligned_cols=116 Identities=11% Similarity=0.034 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008633 234 ESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLG 313 (558)
Q Consensus 234 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 313 (558)
..+..+...+...|++++|...|++.....+.+...|..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 3444444455555555555555554443333344455555555555555555555555544432 123444444445555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008633 314 RAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVG 351 (558)
Q Consensus 314 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 351 (558)
..|++++|.+.+++..+.... +...+..+..++.+.|
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLR 128 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHh
Confidence 555555555555554444222 3344444444444443
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.41 E-value=8.4e-06 Score=74.82 Aligned_cols=187 Identities=5% Similarity=-0.098 Sum_probs=98.7
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHHhCCHHHHHHHHHHHHhCCCCCC---------------
Q 008633 175 RRKFFDFMCNVLSDMAKEGVNPDLETLSIV-------MDSFIRAGQVYKAIQMLGRLEDFGLKFD--------------- 232 (558)
Q Consensus 175 ~~~~~~~a~~l~~~m~~~g~~~~~~t~~~l-------i~~~~~~g~~~~A~~~~~~~~~~g~~~~--------------- 232 (558)
+.++...|.+.|.+..+.. +-....|..+ ...+.+.++..+++..+....+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5678888888888887763 2245666666 3555555555555544444433 1111
Q ss_pred -------HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HH
Q 008633 233 -------AESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD--SL 303 (558)
Q Consensus 233 -------~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~ 303 (558)
....-.+...+...|++++|.++|+.+....|-+. ....+...+.+.+++++|+..|+...... .|. ..
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 12333445556666666666666666654433233 44555556666666666666665332211 110 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 008633 304 TFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPD--TNAYNAVISNYISVGDFDECMKYYKGMSSY 366 (558)
Q Consensus 304 t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 366 (558)
.+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 444455555566666666666665553322132 223344455555566666666666655543
No 143
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.39 E-value=4e-06 Score=76.98 Aligned_cols=189 Identities=9% Similarity=-0.021 Sum_probs=129.8
Q ss_pred HhCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCCHhHHHHHHHHhhcCCC------CC----------
Q 008633 210 RAGQVYKAIQMLGRLEDFGLKFDAESLNVV-------LWCLCQRLHVGAASSLFNSMKGKVL------FN---------- 266 (558)
Q Consensus 210 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-------l~~~~~~~~~~~A~~~~~~m~~~~~------~~---------- 266 (558)
..++...|.+.|.++.+.... ....|+.+ ...+.+.++..++...+..-.+.-+ .+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 579999999999999986533 56677777 4556665556666555554432100 01
Q ss_pred -----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHH
Q 008633 267 -----VMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPD--TNA 339 (558)
Q Consensus 267 -----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~ 339 (558)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 1234456777888899999999998887643 444355555667888899999998887554432 111 236
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008633 340 YNAVISNYISVGDFDECMKYYKGMSSYNCEPN--MDTYTRLISGLLKSRKVADALEVFEEMLDRG 402 (558)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 402 (558)
+..+..++...|++++|++.|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67788888889999999999988875432243 3356667777888889999999988888753
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.38 E-value=2e-06 Score=71.74 Aligned_cols=92 Identities=10% Similarity=-0.019 Sum_probs=42.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008633 412 SFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIG 491 (558)
Q Consensus 412 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 491 (558)
.+...+...|++++|...|+++.+.. +.+...|..+..+|...|++++|+..|++..+.. +.+...|..+..++...|
T Consensus 26 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g 103 (148)
T 2vgx_A 26 SLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQXG 103 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 33344444455555555555444432 2234444444444445555555555554444432 223344444444445555
Q ss_pred CHhHHHHHHHHHHh
Q 008633 492 QLENAVLVMEESLR 505 (558)
Q Consensus 492 ~~~~A~~~~~~m~~ 505 (558)
++++|...|+++++
T Consensus 104 ~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 104 ELAEAESGLFLAQE 117 (148)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555544443
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.36 E-value=1e-05 Score=77.85 Aligned_cols=94 Identities=14% Similarity=0.103 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 008633 303 LTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGL 382 (558)
Q Consensus 303 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 382 (558)
..|..+..++.+.|++++|...+++..+.... +...|..+..+|...|++++|...|++..+.. +.+...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 45555556666666666666666666555332 55566666666666666666666666665542 33455556666666
Q ss_pred HhcCCHHHH-HHHHHHH
Q 008633 383 LKSRKVADA-LEVFEEM 398 (558)
Q Consensus 383 ~~~g~~~~A-~~~~~~m 398 (558)
.+.|+.++| ...++.|
T Consensus 275 ~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 666666655 3344444
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.36 E-value=4.1e-06 Score=72.11 Aligned_cols=122 Identities=6% Similarity=0.029 Sum_probs=82.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCCh--
Q 008633 382 LLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRR-LSGFGKC-- 458 (558)
Q Consensus 382 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~-- 458 (558)
+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 345677777877777776653 3455667777777777888888888888777654 3356666667666 6677777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 459 GMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 459 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
++|...+++..+.. +.+...+..+...+...|++++|...++++++.
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888887777653 335667777777778888888888888877765
No 147
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.34 E-value=1.1e-06 Score=77.53 Aligned_cols=124 Identities=12% Similarity=-0.003 Sum_probs=64.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 267 VMTYNIVISGWSKLGQVVEMERVLKEIVAEGFS-PD--------------SLTFSFLIEGLGRAGRIDDAIEVFDTMKEK 331 (558)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~--------------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 331 (558)
...+..+...+.+.|++++|...|++..+.... |+ ...|..+..++.+.|++++|...++...+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344555666666666666666666666553211 10 144555555555556666666666555554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 332 GCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADAL 392 (558)
Q Consensus 332 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 392 (558)
... +...+..+..+|...|++++|.+.|++..+.. +-+...+..+..++...++.+++.
T Consensus 118 ~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 118 DKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp STT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred Ccc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 322 44555555556666666666666666555432 223444444444444444444433
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.33 E-value=3.3e-06 Score=70.42 Aligned_cols=98 Identities=12% Similarity=0.002 Sum_probs=46.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008633 266 NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVIS 345 (558)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 345 (558)
+...+..+...+.+.|++++|...|++..... +.+...|..+..++...|++++|...|++..+.... +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 34444445555555555555555555544432 123444444444455555555555555554444322 3344444455
Q ss_pred HHHhcCCHHHHHHHHHHhhh
Q 008633 346 NYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 346 ~~~~~g~~~~A~~~~~~m~~ 365 (558)
+|...|++++|.+.|++..+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555554443
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.32 E-value=1.2e-05 Score=77.31 Aligned_cols=124 Identities=9% Similarity=-0.072 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCCHhHHHHHHHHhhcC
Q 008633 197 DLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFD--------------AESLNVVLWCLCQRLHVGAASSLFNSMKGK 262 (558)
Q Consensus 197 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--------------~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 262 (558)
+...+..+...+.+.|++++|++.|++..+...... ..+|..+..+|.+.|++++|+..|++....
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345666777777777888888888777776432211 244444444555555555555555444443
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008633 263 VLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDA 321 (558)
Q Consensus 263 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 321 (558)
.|.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.|+.++|
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555554444432 11233444444444444444444
No 150
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.31 E-value=7e-06 Score=68.51 Aligned_cols=98 Identities=7% Similarity=0.021 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 008633 198 LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGW 277 (558)
Q Consensus 198 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~ 277 (558)
...+..+...+.+.|++++|++.|+++.+.. +.+...|..+..+|...|++++|...|++.....|.+...|..+..+|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 3455566666667777777777777766653 225666666667777777777777777766655555666777777777
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 008633 278 SKLGQVVEMERVLKEIVAE 296 (558)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~ 296 (558)
.+.|++++|...|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777777664
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.24 E-value=5.1e-05 Score=59.54 Aligned_cols=108 Identities=11% Similarity=-0.114 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008633 163 VKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWC 242 (558)
Q Consensus 163 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 242 (558)
...|..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3445555666666666666666666665542 2245555556666666666666666666655542 2244555555555
Q ss_pred HHhcCCHhHHHHHHHHhhcCCCCChhhHHH
Q 008633 243 LCQRLHVGAASSLFNSMKGKVLFNVMTYNI 272 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 272 (558)
+...|++++|.+.+++.....|.+...+..
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEG 111 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 555555555555555555444434444333
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.23 E-value=4.6e-05 Score=59.82 Aligned_cols=92 Identities=11% Similarity=0.050 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008633 271 NIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISV 350 (558)
Q Consensus 271 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 350 (558)
..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+.... +...+..+..++...
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHH
Confidence 333333444444444444444433321 112333333333444444444444444444333211 333344444444444
Q ss_pred CCHHHHHHHHHHhh
Q 008633 351 GDFDECMKYYKGMS 364 (558)
Q Consensus 351 g~~~~A~~~~~~m~ 364 (558)
|++++|.+.+++..
T Consensus 86 ~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 86 NRFEEAKRTYEEGL 99 (118)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 44444444444444
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.21 E-value=1.1e-05 Score=66.60 Aligned_cols=98 Identities=9% Similarity=0.045 Sum_probs=56.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008633 266 NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVIS 345 (558)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 345 (558)
+...+..+...+.+.|++++|...|++..... +.+...|..+..++...|++++|...|+...+.... +...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 34445555556666666666666666665543 224455555556666666666666666666555433 4445555666
Q ss_pred HHHhcCCHHHHHHHHHHhhh
Q 008633 346 NYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 346 ~~~~~g~~~~A~~~~~~m~~ 365 (558)
+|...|++++|.+.|++..+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.21 E-value=2e-05 Score=65.00 Aligned_cols=91 Identities=9% Similarity=-0.062 Sum_probs=45.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008633 413 FLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQ 492 (558)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 492 (558)
+...+...|++++|...|+++.+.+ +.+...|..+..++...|++++|+..|++..+.. +.+...|..+..++...|+
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3344445555555555555555433 2344445555555555555555555555555432 2234445555555555555
Q ss_pred HhHHHHHHHHHHh
Q 008633 493 LENAVLVMEESLR 505 (558)
Q Consensus 493 ~~~A~~~~~~m~~ 505 (558)
+++|...|+++++
T Consensus 102 ~~~A~~~~~~al~ 114 (142)
T 2xcb_A 102 LDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555543
No 155
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.20 E-value=0.0015 Score=61.71 Aligned_cols=148 Identities=11% Similarity=0.001 Sum_probs=89.6
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CH
Q 008633 251 AASSLFNSMKGKVLFNVMTYNIVISGWSKLGQ----------VVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAG--RI 318 (558)
Q Consensus 251 ~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g--~~ 318 (558)
+|+++++.+....|-+..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-...+.+.+ .+
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccH
Confidence 56666666665555555555554333333332 566777777776653 235566666655566666 36
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc------------
Q 008633 319 DDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGD-FDECMKYYKGMSSYNCEPNMDTYTRLISGLLKS------------ 385 (558)
Q Consensus 319 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~------------ 385 (558)
++++++++.+.+.... |..+|+.-..++...|. ++++++.++++.+.. +-|...|+.....+...
T Consensus 127 ~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~ 204 (331)
T 3dss_A 127 ARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRL 204 (331)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcccccccccc
Confidence 7777777777776544 66677766666666676 477777777777654 45666666655555443
Q ss_pred --CCHHHHHHHHHHHHHC
Q 008633 386 --RKVADALEVFEEMLDR 401 (558)
Q Consensus 386 --g~~~~A~~~~~~m~~~ 401 (558)
+.++++++.+.+....
T Consensus 205 ~~~~~~eEle~~~~ai~~ 222 (331)
T 3dss_A 205 PENVLLKELELVQNAFFT 222 (331)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHh
Confidence 3355666666665554
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.20 E-value=4.4e-05 Score=61.28 Aligned_cols=94 Identities=13% Similarity=0.158 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 008633 305 FSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLK 384 (558)
Q Consensus 305 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 384 (558)
+..+...+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 333344444444444444444444443222 34444445555555555555555555544432 2234444445555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 008633 385 SRKVADALEVFEEMLD 400 (558)
Q Consensus 385 ~g~~~~A~~~~~~m~~ 400 (558)
.|++++|...|++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 5555555555554443
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.19 E-value=3.2e-05 Score=62.12 Aligned_cols=16 Identities=6% Similarity=0.158 Sum_probs=5.9
Q ss_pred HHHhCCHHHHHHHHHH
Q 008633 208 FIRAGQVYKAIQMLGR 223 (558)
Q Consensus 208 ~~~~g~~~~A~~~~~~ 223 (558)
+.+.|++++|++.|++
T Consensus 14 ~~~~~~~~~A~~~~~~ 29 (126)
T 3upv_A 14 YFTKSDWPNAVKAYTE 29 (126)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHH
Confidence 3333333333333333
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.18 E-value=1.9e-05 Score=63.67 Aligned_cols=95 Identities=17% Similarity=0.084 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC--CCCC----HHHHHHH
Q 008633 445 YKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKG--FCPS----RLVYSKL 518 (558)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~~l 518 (558)
+..+...+.+.|++++|++.|++..+.. +-+...|..+..+|...|++++|+..++++++.. ..++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3444455555555555555555555432 2344455555555555555555555555554321 0111 1345555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 008633 519 SNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
..++...|++++|.+.+++...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555566666555555544
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.17 E-value=3.3e-05 Score=67.82 Aligned_cols=95 Identities=8% Similarity=-0.068 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008633 268 MTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNY 347 (558)
Q Consensus 268 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 347 (558)
..|..+..++.+.|++++|+..+++..+.. +.+...+..+..++...|++++|.+.|++..+.... +...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence 556666666666777777777776666542 234556666666677777777777777766665332 455666666666
Q ss_pred HhcCCHHHHH-HHHHHhh
Q 008633 348 ISVGDFDECM-KYYKGMS 364 (558)
Q Consensus 348 ~~~g~~~~A~-~~~~~m~ 364 (558)
...++.+++. ..|..|.
T Consensus 167 ~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 6665555554 3444443
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.17 E-value=4.5e-05 Score=62.07 Aligned_cols=97 Identities=9% Similarity=-0.048 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008633 407 TGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAG 486 (558)
Q Consensus 407 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 486 (558)
...+..+...+...|++++|...++.+.+.. +.+...|..+..++...|++++|...+++..+.. +.+...|..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 3444444445555555555555555554432 2234444555555555555555555555544432 2234444555555
Q ss_pred HHhcCCHhHHHHHHHHHHh
Q 008633 487 LCNIGQLENAVLVMEESLR 505 (558)
Q Consensus 487 ~~~~g~~~~A~~~~~~m~~ 505 (558)
+...|++++|+..++++++
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555443
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.16 E-value=1.7e-05 Score=61.79 Aligned_cols=98 Identities=16% Similarity=0.094 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 008633 443 TAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCP--SRLVYSKLSN 520 (558)
Q Consensus 443 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~ 520 (558)
..+..+...+...|++++|...+++..+.. +.+...|..+...+...|++++|...++++++.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 345556666777777777777777776643 3456677777777788888888888888877653 22 4677777778
Q ss_pred HHHhc-CCHHHHHHHHHHHHHhc
Q 008633 521 KLLAS-NKLESAYNLFRKIKIAR 542 (558)
Q Consensus 521 ~~~~~-g~~~~A~~~~~~m~~~~ 542 (558)
++.+. |++++|.+.+++.....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 88888 88888888887776543
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.15 E-value=3.3e-05 Score=65.43 Aligned_cols=98 Identities=9% Similarity=0.012 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008633 407 TGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAG 486 (558)
Q Consensus 407 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 486 (558)
...+..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|+..+++..+.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4566777778888899999999999888764 4467888888888889999999999998888764 4467788888888
Q ss_pred HHhcCCHhHHHHHHHHHHhC
Q 008633 487 LCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 487 ~~~~g~~~~A~~~~~~m~~~ 506 (558)
+...|++++|+..|+++++.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 88999999999999888865
No 163
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.14 E-value=0.00013 Score=72.59 Aligned_cols=160 Identities=9% Similarity=0.011 Sum_probs=73.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCH
Q 008633 310 EGLGRAGRIDDAIEVFDTMKEKGCGPD----------------TNAYNAVISNYISVGDFDECMKYYKGMSSYN-CEPNM 372 (558)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~m~~~g~~p~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~ 372 (558)
..+.+.|++++|.+.|..+.+...... ...+..+...|.+.|++++|.+++..+.+.- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 445566777777777776665532211 0134455666666666666666666554310 01111
Q ss_pred H----HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHc--CC---
Q 008633 373 D----TYTRLISGLLKSRKVADALEVFEEMLD----RGIVPS-TGTITSFLEPLCSYGPPHAAMMMYKKARKV--GC--- 438 (558)
Q Consensus 373 ~----~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~--- 438 (558)
. +.+.+-..+...|++++|..++++... .+..+. ..++..+...+...|++++|..+++.+... +.
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 111112222234555555555555432 111121 233444455555555555555555544331 10
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 008633 439 KLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQ 469 (558)
Q Consensus 439 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 469 (558)
.....+|..++..|...|++++|..++++..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 0112344444555555555555555554443
No 164
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=0.00018 Score=71.65 Aligned_cols=196 Identities=7% Similarity=0.008 Sum_probs=136.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC-CC
Q 008633 170 VKALGRRKFFDFMCNVLSDMAKEGVNPD----------------LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLK-FD 232 (558)
Q Consensus 170 i~~~~~~~~~~~a~~l~~~m~~~g~~~~----------------~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~ 232 (558)
.+.+.+.|++++|.+.|....+...... ...+..+...|...|++++|.+.+..+.+.--. .+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456788999999999999987532111 134778889999999999999999887642111 12
Q ss_pred H----HHHHHHHHHHHhcCCHhHHHHHHHHhhc-----C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC--
Q 008633 233 A----ESLNVVLWCLCQRLHVGAASSLFNSMKG-----K-VLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE--GF-- 298 (558)
Q Consensus 233 ~----~~~~~ll~~~~~~~~~~~A~~~~~~m~~-----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-- 298 (558)
. .+.+.+-..+...|+.+.|..+++.... . ...-..++..+...|...|++++|..++.+.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 2233333444556888999888876632 1 2223457788899999999999999999887653 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 299 SP-DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEK----GCGPD--TNAYNAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 299 ~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
.+ ...++..++..|...|++++|..++++.... +.++. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 2456888888999999999999998877543 11111 24566677778888899998888777653
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.11 E-value=5.7e-05 Score=61.45 Aligned_cols=97 Identities=10% Similarity=-0.087 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 008633 198 LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGW 277 (558)
Q Consensus 198 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~ 277 (558)
...+..+...+...|++++|+..|....+.. +.+...+..+..++...|++++|...+++.....+.+...|..+..++
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3444444444444455555554444444332 113344444444444444444444444444333333444555555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 008633 278 SKLGQVVEMERVLKEIVA 295 (558)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~ 295 (558)
...|++++|...|++..+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555555554443
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=0.00013 Score=60.00 Aligned_cols=98 Identities=13% Similarity=0.011 Sum_probs=58.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 008633 266 NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD----SLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYN 341 (558)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 341 (558)
+...+..+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|...+++..+.... +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 4556666666666667777777766666654 244 345555556666666666666666666554322 455555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhC
Q 008633 342 AVISNYISVGDFDECMKYYKGMSSY 366 (558)
Q Consensus 342 ~li~~~~~~g~~~~A~~~~~~m~~~ 366 (558)
.+..+|...|++++|.+.|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5666666666666666666665543
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.08 E-value=7.1e-05 Score=63.31 Aligned_cols=96 Identities=7% Similarity=0.006 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008633 267 VMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISN 346 (558)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 346 (558)
...|..+...+.+.|++++|+..|++..+.. +-+...|..+..++.+.|++++|...+++..+.... +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3344445555555555555555555554432 113344444444444445555554444444444322 34444444444
Q ss_pred HHhcCCHHHHHHHHHHhh
Q 008633 347 YISVGDFDECMKYYKGMS 364 (558)
Q Consensus 347 ~~~~g~~~~A~~~~~~m~ 364 (558)
|...|++++|.+.|++..
T Consensus 89 ~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHH
Confidence 444444444444444444
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.08 E-value=3.5e-05 Score=61.55 Aligned_cols=93 Identities=8% Similarity=-0.032 Sum_probs=67.6
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008633 446 KLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLAS 525 (558)
Q Consensus 446 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 525 (558)
..+...+.+.|++++|+..+++..+.. +.+...|..+..++...|++++|+..++++++.. +-+...+..+..+|...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 344555677788888888887777653 4466677777778888888888888888877653 22466777788888888
Q ss_pred CCHHHHHHHHHHHHH
Q 008633 526 NKLESAYNLFRKIKI 540 (558)
Q Consensus 526 g~~~~A~~~~~~m~~ 540 (558)
|++++|.+.+++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888888877763
No 169
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.08 E-value=6.6e-05 Score=60.48 Aligned_cols=23 Identities=4% Similarity=0.163 Sum_probs=9.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhh
Q 008633 342 AVISNYISVGDFDECMKYYKGMS 364 (558)
Q Consensus 342 ~li~~~~~~g~~~~A~~~~~~m~ 364 (558)
.+..++...|++++|++.|++..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 33344444444444444444433
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=0.00012 Score=60.31 Aligned_cols=113 Identities=9% Similarity=-0.122 Sum_probs=78.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHH
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPD----LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAES 235 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~----~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 235 (558)
+.+...+..+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|++.+++..+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 356777888888888888888888888888775 345 5677777777788888888888887777653 225566
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHH
Q 008633 236 LNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVIS 275 (558)
Q Consensus 236 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~ 275 (558)
+..+..++...|++++|...|++.....+.+...+..+..
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 6667777777777777777777665544444444444333
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.07 E-value=4e-05 Score=61.52 Aligned_cols=24 Identities=4% Similarity=-0.011 Sum_probs=9.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKE 292 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~ 292 (558)
.+..+...+...|++++|...+++
T Consensus 40 ~~~~la~~~~~~~~~~~A~~~~~~ 63 (131)
T 1elr_A 40 YITNQAAVYFEKGDYNKCRELCEK 63 (131)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHH
Confidence 333333333333333333333333
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.06 E-value=3.6e-05 Score=59.84 Aligned_cols=100 Identities=11% Similarity=0.027 Sum_probs=57.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHH
Q 008633 266 NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCG-PDTNAYNAVI 344 (558)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li 344 (558)
+...|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.... .+...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 34455555566666666666666666655542 224455555566666666666666666666554211 0355556666
Q ss_pred HHHHhc-CCHHHHHHHHHHhhhC
Q 008633 345 SNYISV-GDFDECMKYYKGMSSY 366 (558)
Q Consensus 345 ~~~~~~-g~~~~A~~~~~~m~~~ 366 (558)
.++.+. |++++|.+.+++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 6666666666666554
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.05 E-value=3.9e-05 Score=61.59 Aligned_cols=96 Identities=7% Similarity=0.006 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCC-------hhhHHH
Q 008633 200 TLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFN-------VMTYNI 272 (558)
Q Consensus 200 t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~-------~~~~~~ 272 (558)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++.....+.+ ..+|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444444555555555555555544432 2234445555555555555555555555443221111 455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 008633 273 VISGWSKLGQVVEMERVLKEIVAE 296 (558)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~~~ 296 (558)
+...+.+.|++++|.+.|++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 666677777777777777766664
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.98 E-value=6.3e-05 Score=62.88 Aligned_cols=131 Identities=11% Similarity=0.077 Sum_probs=59.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-CHH
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKEIVAEGFS-PD----SLTFSFLIEGLGRAGRIDDAIEVFDTMKEKG----CGP-DTN 338 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g----~~p-~~~ 338 (558)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+.. ..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444555555555555555555554432100 01 1234444555555555555555555543321 000 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 339 AYNAVISNYISVGDFDECMKYYKGMSSY----NCE-PNMDTYTRLISGLLKSRKVADALEVFEEML 399 (558)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (558)
++..+...+...|++++|.+.+++..+. +.. ....++..+...+...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4445555555666666666655554421 100 012334445555555555555555555443
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.94 E-value=5.7e-05 Score=63.14 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHh
Q 008633 340 YNAVISNYISVGDFDECMKYYKGM 363 (558)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~~~~~m 363 (558)
+..+...|...|++++|.+.+++.
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHH
Confidence 344444444555555555554443
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.92 E-value=7.1e-05 Score=59.70 Aligned_cols=27 Identities=4% Similarity=-0.056 Sum_probs=10.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 267 VMTYNIVISGWSKLGQVVEMERVLKEI 293 (558)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~m 293 (558)
...+..+..++.+.|++++|...+++.
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 85 IAVHAALAVSHTNEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333333333333333
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.87 E-value=0.00023 Score=71.52 Aligned_cols=125 Identities=10% Similarity=-0.008 Sum_probs=75.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 266 NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD--------------SLTFSFLIEGLGRAGRIDDAIEVFDTMKEK 331 (558)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 331 (558)
....|..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|...+++..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 344566677777777777777777777665321111 355666666666667777777666666665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 332 GCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADAL 392 (558)
Q Consensus 332 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 392 (558)
... +...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.++.++|.
T Consensus 347 ~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 DSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred CCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 433 55666666666667777777777776666542 234445566666666666665554
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.86 E-value=0.00062 Score=54.42 Aligned_cols=11 Identities=27% Similarity=0.256 Sum_probs=3.9
Q ss_pred CCHHHHHHHHH
Q 008633 212 GQVYKAIQMLG 222 (558)
Q Consensus 212 g~~~~A~~~~~ 222 (558)
|++++|.+.|+
T Consensus 16 ~~~~~A~~~~~ 26 (129)
T 2xev_A 16 GKYDDASQLFL 26 (129)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 33333333333
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.86 E-value=4.1e-05 Score=77.39 Aligned_cols=117 Identities=13% Similarity=-0.018 Sum_probs=73.7
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 008633 417 LCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENA 496 (558)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 496 (558)
+...|++++|.+.++++.+.. +.+...|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 445667777777777666643 3346677777777777777777777777777653 33566777777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 008633 497 VLVMEESLRKGFCPSRLVYSKLSNK--LLASNKLESAYNLFR 536 (558)
Q Consensus 497 ~~~~~~m~~~g~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 536 (558)
.+.++++++.. +-+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777652 1123344444444 667777777777766
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.84 E-value=0.00024 Score=71.36 Aligned_cols=124 Identities=7% Similarity=-0.120 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCC
Q 008633 163 VKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPD--------------LETLSIVMDSFIRAGQVYKAIQMLGRLEDFG 228 (558)
Q Consensus 163 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~--------------~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g 228 (558)
...|..+...+.+.|++++|+..|++..+...... ...|..+..+|.+.|++++|+..++++.+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34566666666677777777777776665321111 3445555555555555555555555555432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 008633 229 LKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEME 287 (558)
Q Consensus 229 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 287 (558)
+.+...|..+..+|...|++++|...|++.....|.+...+..+..++.+.++.+++.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1234445555555555555555555555554444444444555555555544444443
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.82 E-value=0.00021 Score=69.53 Aligned_cols=140 Identities=10% Similarity=0.055 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008633 372 MDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRR 451 (558)
Q Consensus 372 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 451 (558)
...|..+...+.+.|++++|+..|++..+.- +.. ......+.+. +. .+.+..+|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~-------~~-~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGA-------KL-QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHG-------GG-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHH-------HH-HHHHHHHHHHHHHH
Confidence 4456777777888888888888887766520 000 0000001110 00 12235678888888
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008633 452 LSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESA 531 (558)
Q Consensus 452 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 531 (558)
|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|+..|+++++.. +-+...+..+..++.+.++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998764 4467788999999999999999999999998763 23567777788888777777766
Q ss_pred HH
Q 008633 532 YN 533 (558)
Q Consensus 532 ~~ 533 (558)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.80 E-value=0.00051 Score=54.95 Aligned_cols=56 Identities=9% Similarity=-0.008 Sum_probs=24.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 008633 170 VKALGRRKFFDFMCNVLSDMAKEGVNPDL---ETLSIVMDSFIRAGQVYKAIQMLGRLED 226 (558)
Q Consensus 170 i~~~~~~~~~~~a~~l~~~m~~~g~~~~~---~t~~~li~~~~~~g~~~~A~~~~~~~~~ 226 (558)
...+.+.|++++|...|+...+... .+. ..+..+..++.+.|++++|++.++++.+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444445555555555555444321 111 2344444444444444444444444443
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.79 E-value=4.3e-05 Score=60.51 Aligned_cols=85 Identities=14% Similarity=-0.048 Sum_probs=43.4
Q ss_pred hCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 008633 211 AGQVYKAIQMLGRLEDFG--LKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMER 288 (558)
Q Consensus 211 ~g~~~~A~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 288 (558)
.|++++|+..|++..+.+ -+.+..++..+..+|...|++++|...|++.....|.+...+..+..++.+.|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 345555555555555432 112334455555555555555555555555544444455555555555666666666666
Q ss_pred HHHHHHH
Q 008633 289 VLKEIVA 295 (558)
Q Consensus 289 ~~~~m~~ 295 (558)
.+++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.78 E-value=5.5e-05 Score=76.42 Aligned_cols=118 Identities=8% Similarity=-0.048 Sum_probs=78.6
Q ss_pred HHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008633 242 CLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDA 321 (558)
Q Consensus 242 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 321 (558)
.+.+.|++++|.+.|++.....+.+..+|..+..+|.+.|++++|++.+++..+.. +-+...+..+..+|...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 44566777777777777665555567777778888888888888888887777753 23566777777777888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 008633 322 IEVFDTMKEKGCGPDTNAYNAVISN--YISVGDFDECMKYYK 361 (558)
Q Consensus 322 ~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 361 (558)
.+.+++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888877766432 33344444444 777788888888887
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.78 E-value=4.4e-05 Score=60.42 Aligned_cols=86 Identities=19% Similarity=0.182 Sum_probs=51.5
Q ss_pred cCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 008633 420 YGPPHAAMMMYKKARKVG--CKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAV 497 (558)
Q Consensus 420 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 497 (558)
.|++++|+..|+++.+.+ -+.+...+..+..+|...|++++|+..+++..+.. +-+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 455666666666666543 12234556666666667777777777777666543 334556666666777777777777
Q ss_pred HHHHHHHhC
Q 008633 498 LVMEESLRK 506 (558)
Q Consensus 498 ~~~~~m~~~ 506 (558)
..+++.++.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766654
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.75 E-value=0.00026 Score=68.84 Aligned_cols=138 Identities=9% Similarity=-0.025 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 008633 198 LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGW 277 (558)
Q Consensus 198 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~ 277 (558)
...+..+...+.+.|++++|++.|++..+.- +.. ..... .+......+.+..+|..+..+|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~-------~~~~~~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAE-------DADGAKLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSC-------HHHHGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccC-------hHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777777777777777666410 000 00000 0000001111334455555555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008633 278 SKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDEC 356 (558)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 356 (558)
.+.|++++|+..+++..+.. +-+...|..+..+|...|++++|.+.|++..+.... +...+..+..++.+.++.+++
T Consensus 284 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555432 123444444555555555555555555555444222 334444444444444444333
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.74 E-value=0.002 Score=66.25 Aligned_cols=171 Identities=11% Similarity=-0.022 Sum_probs=122.0
Q ss_pred HhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--
Q 008633 249 VGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQ----------VVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAG-- 316 (558)
Q Consensus 249 ~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-- 316 (558)
-++|++.++.+....|-+..+|+.--..+.+.|+ ++++++.++++.+.. +-+..+|+.-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 3566777777766666677777776666666666 788888888888764 336677777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc----------
Q 008633 317 RIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVG-DFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKS---------- 385 (558)
Q Consensus 317 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---------- 385 (558)
+++++.+.++++.+.... +..+|+.-..++.+.| .++++++.++++.+.. +-|...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccc
Confidence 668888888888887655 7778888777777888 7888888888888765 45677777776666653
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 008633 386 ----RKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPP 423 (558)
Q Consensus 386 ----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 423 (558)
+.++++++.+.+..... +-+...|..+-..+.+.++.
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 45788888888887753 33455666555555555553
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.73 E-value=0.00038 Score=58.53 Aligned_cols=64 Identities=19% Similarity=0.261 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 337 TNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDR 401 (558)
Q Consensus 337 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (558)
...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3456666666777777777777777666543 345566666677777777777777777766654
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.69 E-value=0.00048 Score=57.90 Aligned_cols=97 Identities=10% Similarity=-0.064 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcC
Q 008633 200 TLSIVMDSFIRAGQVYKAIQMLGRLEDF--------G---------LKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGK 262 (558)
Q Consensus 200 t~~~li~~~~~~g~~~~A~~~~~~~~~~--------g---------~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 262 (558)
.+......+.+.|++++|++.|.+..+. . -+.+..+|..+..+|.+.|++++|+..+++....
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444445555555555555555554432 0 0112344555555566666666666666555544
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008633 263 VLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE 296 (558)
Q Consensus 263 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 296 (558)
.|.+...|..+..++...|++++|...|++..+.
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4445556666666666666666666666665554
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.68 E-value=0.0012 Score=67.88 Aligned_cols=172 Identities=7% Similarity=-0.064 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC--C
Q 008633 215 YKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLH----------VGAASSLFNSMKGKVLFNVMTYNIVISGWSKLG--Q 282 (558)
Q Consensus 215 ~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~----------~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g--~ 282 (558)
++|++.++++...... +..+|+.--.++...|+ ++++++.++.+....|-+..+|+.-.-.+.+.| +
T Consensus 46 eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 3445555555443322 33344444334433333 566666666665555556666666666666666 5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------
Q 008633 283 VVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAG-RIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISV----------- 350 (558)
Q Consensus 283 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------- 350 (558)
++++++.++++.+.. +-+...|+.-...+.+.| .++++.+.++++++..+. |..+|+.....+.+.
T Consensus 125 ~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccccc
Confidence 577777777777654 235666666666666666 677777777777666544 666776666665552
Q ss_pred ---CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 351 ---GDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVAD 390 (558)
Q Consensus 351 ---g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 390 (558)
+.++++++.+++..... +-|...|.-+-..+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 45788888888887654 4567778777777766666443
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.62 E-value=0.00041 Score=69.73 Aligned_cols=126 Identities=11% Similarity=0.004 Sum_probs=86.3
Q ss_pred HHhcCChhHHHHHHHHHHHc---CCCC----CHHHHHHHHHHHHcCCChhHHHHHHHHHHH-----CC-CCCC-HHHHHH
Q 008633 417 LCSYGPPHAAMMMYKKARKV---GCKL----SLTAYKLLLRRLSGFGKCGMLLDLWHEMQE-----SG-YPSD-GEIYEY 482 (558)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-~~p~-~~~~~~ 482 (558)
+...|++++|+.++++..+. -+.+ ...+++.|...|...|++++|+.++++..+ .| -.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34567777777777665542 1111 245677777788888888888777776652 22 1222 347888
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 008633 483 VIAGLCNIGQLENAVLVMEESLRK---GFCPS----RLVYSKLSNKLLASNKLESAYNLFRKIKIAR 542 (558)
Q Consensus 483 li~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 542 (558)
|...|...|++++|..+++++++- -+-|+ ..+...+..++...|++++|+.++.++++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999888642 11233 4556677778888999999999999987643
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.61 E-value=0.00023 Score=68.32 Aligned_cols=61 Identities=13% Similarity=0.093 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 304 TFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 304 t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
.|..+..++.+.|++++|...+++..+.... +...|..+..+|...|++++|.+.|++..+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444445555555555555555555444322 444555555555555555555555555543
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.61 E-value=0.00077 Score=55.75 Aligned_cols=96 Identities=14% Similarity=-0.045 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC------C-----HHHHHHHHHHHHhcCCHhHHHHHHHHhhcC------
Q 008633 200 TLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKF------D-----AESLNVVLWCLCQRLHVGAASSLFNSMKGK------ 262 (558)
Q Consensus 200 t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~------~-----~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~------ 262 (558)
.+......+.+.|++++|++.|++..+..... + ...|+.+..++.+.|++++|+..+++....
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34445555666677777777776666532210 1 114444444444444444444444443332
Q ss_pred -CCCChhhH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 263 -VLFNVMTY----NIVISGWSKLGQVVEMERVLKEIVA 295 (558)
Q Consensus 263 -~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 295 (558)
.|.+...| .....++...|++++|+..|++..+
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33344444 5555555555555555555555443
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.59 E-value=0.00089 Score=54.62 Aligned_cols=110 Identities=13% Similarity=0.062 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 008633 282 QVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYIS----VGDFDECM 357 (558)
Q Consensus 282 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~ 357 (558)
++++|.++|++..+.| .++.. +...|...+.+++|.+.|++..+.| +...+..|..+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4555566666555554 22222 3344444455555666666555553 44455555555555 55566666
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 008633 358 KYYKGMSSYNCEPNMDTYTRLISGLLK----SRKVADALEVFEEMLDRG 402 (558)
Q Consensus 358 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 402 (558)
++|++..+.| +...+..|...|.. .+++++|...|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666655543 34445555555555 555555555555555544
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.58 E-value=0.0011 Score=54.89 Aligned_cols=93 Identities=15% Similarity=0.115 Sum_probs=51.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CCCC-
Q 008633 308 LIEGLGRAGRIDDAIEVFDTMKEKGCGP------D-----TNAYNAVISNYISVGDFDECMKYYKGMSSY-----NCEP- 370 (558)
Q Consensus 308 ll~~~~~~g~~~~a~~~~~~m~~~g~~p------~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p- 370 (558)
....+.+.|++++|...|++.++..... + ...|..+..++.+.|++++|+..+++.++. .+.|
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 3344444555555555555544432210 1 226666666666667766666666666553 0123
Q ss_pred CHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 371 NMDTY----TRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 371 ~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
+...| .....++...|++++|+..|++..+
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33455 6666667777777777777766653
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.58 E-value=0.00024 Score=68.19 Aligned_cols=148 Identities=11% Similarity=-0.048 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008633 163 VKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWC 242 (558)
Q Consensus 163 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 242 (558)
...|..+...+.+.|++++|...|++.... .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 455777778888889999999999887764 233321 111222233322211 1366777778
Q ss_pred HHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-HHhcCCHHH
Q 008633 243 LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD-SLTFSFLIEG-LGRAGRIDD 320 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~-~~~~g~~~~ 320 (558)
|.+.|++++|+..+++.....+.+...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888776655667778888888888888888888888877654 233 3334444333 233456667
Q ss_pred HHHHHHHHHHC
Q 008633 321 AIEVFDTMKEK 331 (558)
Q Consensus 321 a~~~~~~m~~~ 331 (558)
+.+.|..|...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 77777777655
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.54 E-value=0.00046 Score=69.34 Aligned_cols=124 Identities=11% Similarity=-0.020 Sum_probs=63.8
Q ss_pred HHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-C-CHHHHHH
Q 008633 277 WSKLGQVVEMERVLKEIVAE-----G-FSPD-SLTFSFLIEGLGRAGRIDDAIEVFDTMKEK-----GCG-P-DTNAYNA 342 (558)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~~-p-~~~~~~~ 342 (558)
+...|++++|+.++++..+. | -.|+ ..+++.|...|...|++++|..++++..+. |.. | ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44566666666666665542 1 0121 245666666666666666666666655432 211 1 1335566
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh-----CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 343 VISNYISVGDFDECMKYYKGMSS-----YNC-EPN-MDTYTRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 343 li~~~~~~g~~~~A~~~~~~m~~-----~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
|...|...|++++|+.++++..+ .|- .|+ ..+.+.+-.++...+.+++|+.++..+.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665442 120 111 22334444455555556666666555543
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.52 E-value=6.7e-05 Score=58.35 Aligned_cols=92 Identities=13% Similarity=0.104 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-------HHH
Q 008633 442 LTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-------RLV 514 (558)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~~ 514 (558)
...+..+...+...|++++|++.|++..+.. +.+...|..+..++...|++++|+..++++++. .|+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHH
Confidence 4566677777888888888888888887653 446778888888888889999999888888865 344 455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 008633 515 YSKLSNKLLASNKLESAYNLFR 536 (558)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~ 536 (558)
+..+..++...|+.++|.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHH
Confidence 6666666666666555544443
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.51 E-value=0.003 Score=51.42 Aligned_cols=89 Identities=8% Similarity=-0.006 Sum_probs=46.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008633 273 VISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGR----AGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYI 348 (558)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 348 (558)
|...|...+.+++|.++|++..+.| +...+..+-..|.. .++.++|.++|++..+.| +...+..|..+|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 4444444444555555555555443 34444444444444 455555555555555553 3445555555555
Q ss_pred h----cCCHHHHHHHHHHhhhCC
Q 008633 349 S----VGDFDECMKYYKGMSSYN 367 (558)
Q Consensus 349 ~----~g~~~~A~~~~~~m~~~~ 367 (558)
. .++.++|.++|++..+.|
T Consensus 105 ~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC
Confidence 5 556666666666665544
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.47 E-value=0.00087 Score=52.47 Aligned_cols=80 Identities=13% Similarity=0.045 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008633 425 AAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESL 504 (558)
Q Consensus 425 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (558)
.|+..++++.+.. +.+...+..+...|...|++++|+..+++..+.. +.+...|..+..++...|++++|...|++++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666643 3456677777777777777777777777777643 3355667777777777777777777777766
Q ss_pred hC
Q 008633 505 RK 506 (558)
Q Consensus 505 ~~ 506 (558)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.00033 Score=54.28 Aligned_cols=96 Identities=9% Similarity=0.009 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC------HHH
Q 008633 162 DVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFD------AES 235 (558)
Q Consensus 162 ~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~------~~~ 235 (558)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|++.+++..+.... + ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHH
Confidence 45667778888888888888888888887763 346778888888888888888888888888875322 2 445
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHh
Q 008633 236 LNVVLWCLCQRLHVGAASSLFNSM 259 (558)
Q Consensus 236 ~~~ll~~~~~~~~~~~A~~~~~~m 259 (558)
+..+..++...|+.+.|...++++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHh
Confidence 555566666666666555544443
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.34 E-value=0.0015 Score=51.12 Aligned_cols=78 Identities=12% Similarity=0.066 Sum_probs=38.4
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 252 ASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKE 330 (558)
Q Consensus 252 A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 330 (558)
|.+.|++.....|.+...|..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444445555555555555555555555555555432 12334444455555555555555555554443
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.33 E-value=0.0027 Score=46.81 Aligned_cols=82 Identities=13% Similarity=0.139 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008633 442 LTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNK 521 (558)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 521 (558)
...+..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3455556666677777777777777766543 3355667777777777777777777777777653 2235566666665
Q ss_pred HHhc
Q 008633 522 LLAS 525 (558)
Q Consensus 522 ~~~~ 525 (558)
+.+.
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.27 E-value=0.00034 Score=57.76 Aligned_cols=86 Identities=8% Similarity=-0.016 Sum_probs=47.3
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh----------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008633 419 SYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKC----------GMLLDLWHEMQESGYPSDGEIYEYVIAGLC 488 (558)
Q Consensus 419 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 488 (558)
+.+.+++|.+.++...+.. +.+...|..+..++...+++ ++|+..|++..+.. +-+...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 3445566666666665544 33555555555555555543 35666666655543 224445666666665
Q ss_pred hcC-----------CHhHHHHHHHHHHhC
Q 008633 489 NIG-----------QLENAVLVMEESLRK 506 (558)
Q Consensus 489 ~~g-----------~~~~A~~~~~~m~~~ 506 (558)
..| ++++|+..|+++++.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 543 566666666666543
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.22 E-value=0.0027 Score=46.80 Aligned_cols=60 Identities=10% Similarity=0.097 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 008633 165 SYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLE 225 (558)
Q Consensus 165 ~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~ 225 (558)
.|..+...+...|++++|...+++..+.. +.+..++..+...+.+.|++++|++.+++..
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33334444444444444444444443321 1123333333344444444444444444333
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.09 E-value=0.0029 Score=48.01 Aligned_cols=64 Identities=13% Similarity=0.104 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008633 441 SLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLR 505 (558)
Q Consensus 441 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 505 (558)
+...+..+..+|...|++++|+..|++..+.. +.+...|..+..+|...|++++|+..+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666667777777777777777777776643 33455677777777777777777777776654
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.07 E-value=0.0023 Score=48.64 Aligned_cols=64 Identities=11% Similarity=-0.002 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 476 DGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 476 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
+...+..+...+...|++++|+..|+++++.. +-+...|..+..+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45556666666666666666666666666543 12345666666666666666666666666553
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.96 E-value=0.0022 Score=52.93 Aligned_cols=98 Identities=13% Similarity=0.011 Sum_probs=54.3
Q ss_pred HhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HhHHHHHHHHhhcCCCCChhhHHHHHHHHHh
Q 008633 210 RAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLH----------VGAASSLFNSMKGKVLFNVMTYNIVISGWSK 279 (558)
Q Consensus 210 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~----------~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~ 279 (558)
+.+.+++|++.++...+.. +.+...|+.+..++...++ +++|+..|++...-.|.+..+|..+..+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3344455555555555433 2244455544445444443 3466666666655555566666666666665
Q ss_pred c-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008633 280 L-----------GQVVEMERVLKEIVAEGFSPDSLTFSFLIE 310 (558)
Q Consensus 280 ~-----------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 310 (558)
. |++++|++.|++..+. .|+...|...+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 5 3677777777777764 455555544333
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.71 E-value=0.1 Score=56.18 Aligned_cols=29 Identities=7% Similarity=0.103 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 008633 336 DTNAYNAVISNYISVGDFDECMKYYKGMS 364 (558)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 364 (558)
+...|..+...+.+.++++.|++.|.++.
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 33444445555555555555555444443
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.70 E-value=0.023 Score=53.84 Aligned_cols=69 Identities=13% Similarity=0.061 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 008633 474 PSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQN 544 (558)
Q Consensus 474 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 544 (558)
+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.+++.......
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 4455566666555555566666666666666653 56556666666666666666666666666644333
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.54 E-value=0.016 Score=57.12 Aligned_cols=85 Identities=12% Similarity=0.122 Sum_probs=54.5
Q ss_pred CCChhHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-----C-CCCC-HHHHHHHHH
Q 008633 455 FGKCGMLLDLWHEMQE---SGYPSD----GEIYEYVIAGLCNIGQLENAVLVMEESLRK-----G-FCPS-RLVYSKLSN 520 (558)
Q Consensus 455 ~g~~~~A~~~~~~m~~---~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~~~~~l~~ 520 (558)
.|++++|+.++++..+ .-+.|+ ..+++.+..+|...|++++|..+++++++- | -.|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4566666666665543 112222 346777777777777877777777776641 2 1222 456777777
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 008633 521 KLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 521 ~~~~~g~~~~A~~~~~~m~ 539 (558)
.|...|++++|..++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 8888888888887777664
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.44 E-value=0.17 Score=54.46 Aligned_cols=155 Identities=10% Similarity=0.040 Sum_probs=97.1
Q ss_pred HHHHhcCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008633 171 KALGRRKFFDFMCN-VLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHV 249 (558)
Q Consensus 171 ~~~~~~~~~~~a~~-l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~ 249 (558)
......+++++|.+ ++..+ ++......++..+.+.|..+.|+++.+.-. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 33446788888866 44221 113334777788888888888887663211 113445678899
Q ss_pred hHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 250 GAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMK 329 (558)
Q Consensus 250 ~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 329 (558)
+.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-+...
T Consensus 669 ~~A~~~~~~~~-----~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 669 TLARDLLTDES-----AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHHTTCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-----cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 99988876553 677899999999999999999998887743 3344444555666666555555544
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 008633 330 EKGCGPDTNAYNAVISNYISVGDFDECMKYYKGM 363 (558)
Q Consensus 330 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 363 (558)
..|. ++....+|.+.|++++|++++.++
T Consensus 735 ~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 735 TTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4431 233334455556666665555443
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.39 E-value=0.056 Score=51.25 Aligned_cols=63 Identities=14% Similarity=0.052 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 301 DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 301 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33344443333333344444444444444442 3343444444444444444444444444433
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.34 E-value=0.033 Score=54.88 Aligned_cols=88 Identities=17% Similarity=0.187 Sum_probs=50.4
Q ss_pred HHcCCChhHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-----C-CCCC-HHHHHH
Q 008633 452 LSGFGKCGMLLDLWHEMQES---GYPSD----GEIYEYVIAGLCNIGQLENAVLVMEESLRK-----G-FCPS-RLVYSK 517 (558)
Q Consensus 452 ~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~~~~~ 517 (558)
+...|++++|+.++++..+. -+.|+ ..+++.+...|...|++++|..++++++.- | -.|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44556666666666666531 11222 335666666666677777776666665531 1 1122 355666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 008633 518 LSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
|...|...|++++|..++++..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 6666777777777776666553
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.15 E-value=0.014 Score=57.44 Aligned_cols=60 Identities=12% Similarity=0.183 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh-----CC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 339 AYNAVISNYISVGDFDECMKYYKGMSS-----YN-CEPN-MDTYTRLISGLLKSRKVADALEVFEEM 398 (558)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (558)
+++.|..+|...|++++|+.++++..+ .| -.|+ ..+++.|...|...|++++|+.++++.
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 444444445555555555444444332 11 0111 234455555555555555555555544
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.08 E-value=0.032 Score=55.00 Aligned_cols=61 Identities=10% Similarity=-0.016 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKEIVAE-----G-FSPD-SLTFSFLIEGLGRAGRIDDAIEVFDTMK 329 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 329 (558)
+++.|+..|...|++++|+.++++.... | -.|+ ..+++.|...|...|++++|..++++..
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4555555555555555555555554431 1 1122 2345555555555666666555555543
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.06 E-value=0.049 Score=40.46 Aligned_cols=48 Identities=8% Similarity=-0.033 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 458 CGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 458 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
.++|..++++..+.. +-+......+...+.+.|++++|+..|+++.+.
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344555555444432 223344444444445555555555555554443
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.01 E-value=0.018 Score=43.18 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=10.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKEIV 294 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~ 294 (558)
.|..+..++...|++++|...|++..
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333444444444444444444433
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.86 E-value=0.027 Score=42.92 Aligned_cols=70 Identities=13% Similarity=0.040 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC
Q 008633 440 LSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESG------YPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS 511 (558)
Q Consensus 440 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 511 (558)
.+..-+..|...+...|+++.|...++...+.. -.+...++..+..++.+.|++++|+.+++++.+. .|+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~ 78 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPE 78 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCC
Confidence 345566677778888888888888887766421 1234567788888888888888888888888764 455
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.84 E-value=0.042 Score=40.98 Aligned_cols=54 Identities=9% Similarity=0.099 Sum_probs=25.3
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 008633 172 ALGRRKFFDFMCNVLSDMAKEGVNPDLE-TLSIVMDSFIRAGQVYKAIQMLGRLED 226 (558)
Q Consensus 172 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~-t~~~li~~~~~~g~~~~A~~~~~~~~~ 226 (558)
.+.+.|++++|+..+++..+.. +.+.. .+..+..++...|++++|++.|++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444455555555555544432 12333 444444445555555555555555444
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.80 E-value=0.059 Score=43.85 Aligned_cols=85 Identities=14% Similarity=0.114 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC---ChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHhHHH
Q 008633 423 PHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFG---KCGMLLDLWHEMQESGYPS--DGEIYEYVIAGLCNIGQLENAV 497 (558)
Q Consensus 423 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~ 497 (558)
...+.+-|.+..+.+. ++..+...+..++++.+ +.++++.++++..+.+ .| +...+-.+.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4455556665555443 66677777777777776 4557777777777653 23 2445555666677777777777
Q ss_pred HHHHHHHhCCCCCC
Q 008633 498 LVMEESLRKGFCPS 511 (558)
Q Consensus 498 ~~~~~m~~~g~~p~ 511 (558)
++++.+++. .|+
T Consensus 92 ~y~~~lL~i--eP~ 103 (152)
T 1pc2_A 92 KYVRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHHHH--CTT
T ss_pred HHHHHHHhc--CCC
Confidence 777777755 454
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.20 E-value=1.2 Score=37.25 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=21.9
Q ss_pred HhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 244 CQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEI 293 (558)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 293 (558)
.+.|+++.|.++.+.+. +...|..|.......|+++-|.+.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l~-----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKLN-----DSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHHC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHhC-----CHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34455555554444431 3444555555555555555555555443
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.17 E-value=0.15 Score=37.69 Aligned_cols=46 Identities=9% Similarity=0.078 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 319 DDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 319 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
++|..++++..+.... ++.....+...+.+.|++++|+..|+++.+
T Consensus 26 ~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 26 DEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444444443322 333444444444444444444444444443
No 224
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.11 E-value=0.93 Score=35.64 Aligned_cols=139 Identities=13% Similarity=0.117 Sum_probs=82.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 008633 175 RRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASS 254 (558)
Q Consensus 175 ~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~ 254 (558)
-.|..++..++..+.... .+..-|+.+|.-....-+-+-..++++.+-+. .|. ..+|++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 346666666666666553 24555666665555555555555555544331 111 12344444444
Q ss_pred HHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 008633 255 LFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCG 334 (558)
Q Consensus 255 ~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 334 (558)
.+-.+.. +....+..++.+...|+-++..+++.++.. +.+|+......+..+|.+.|+..++.+++.+..+.|++
T Consensus 83 C~~~~n~----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 83 CGVINNT----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHTTC----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcc----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4433322 445566667777777777777777777543 23566777777777788888888888877777777754
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.06 E-value=0.18 Score=38.20 Aligned_cols=25 Identities=4% Similarity=-0.116 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Q 008633 201 LSIVMDSFIRAGQVYKAIQMLGRLE 225 (558)
Q Consensus 201 ~~~li~~~~~~g~~~~A~~~~~~~~ 225 (558)
+..+...+.+.|++..|..+|+...
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al 32 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQAL 32 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHH
Confidence 3344444444444444444444433
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.84 E-value=0.17 Score=41.14 Aligned_cols=79 Identities=10% Similarity=0.087 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHhHHHHHHHHhhcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 008633 217 AIQMLGRLEDFGLKFDAESLNVVLWCLCQRL---HVGAASSLFNSMKGKVLF--NVMTYNIVISGWSKLGQVVEMERVLK 291 (558)
Q Consensus 217 A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~---~~~~A~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~ 291 (558)
+.+-|.+..+.|. ++..+...+..++++.+ +++++..+|+.......| +...+-.|.-++.+.|++++|.+.++
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~ 95 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 95 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3344444443332 45555555555555555 344555555554433212 23344445555566666666666666
Q ss_pred HHHHc
Q 008633 292 EIVAE 296 (558)
Q Consensus 292 ~m~~~ 296 (558)
.+.+.
T Consensus 96 ~lL~i 100 (152)
T 1pc2_A 96 GLLQT 100 (152)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 65553
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.75 E-value=1.6 Score=36.46 Aligned_cols=97 Identities=14% Similarity=0.161 Sum_probs=47.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 313 GRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADAL 392 (558)
Q Consensus 313 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 392 (558)
...|+++.|.++.+.+ -+...|..|.+...+.|+++-|++.|.+..+ +..+.-.|.-.|+.+.-.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3455666665555443 1455566666666666666666666665542 334444444455555544
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 008633 393 EVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMY 430 (558)
Q Consensus 393 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 430 (558)
.+-+.....|- ++.....+...|+++++.+++
T Consensus 81 kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 81 KMQNIAQTRED------FGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHH
Confidence 44443333331 122222333445555555554
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.69 E-value=1.2 Score=34.98 Aligned_cols=63 Identities=21% Similarity=0.202 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 008633 445 YKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGF 508 (558)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 508 (558)
....++.+..+|+-+...+++.++... .+|++...-.+..+|.+.|+..+|.+++.++.++|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 333444455555555555555554321 244555555555555555555555555555555553
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.39 E-value=0.53 Score=42.78 Aligned_cols=83 Identities=13% Similarity=0.200 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc-CCHHH
Q 008633 320 DAIEVFDTMKEKGCGPD---TNAYNAVISNYISV-----GDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKS-RKVAD 390 (558)
Q Consensus 320 ~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~ 390 (558)
.|...+++.++. .|+ ...|..+...|.+. |+.++|.+.|++..+.+-.-+..++......++.. |+.++
T Consensus 181 ~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 181 AAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 344444444443 222 33555666666653 66666666666666542111255555555666553 66666
Q ss_pred HHHHHHHHHHCCCC
Q 008633 391 ALEVFEEMLDRGIV 404 (558)
Q Consensus 391 A~~~~~~m~~~~~~ 404 (558)
|.+.+++.......
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 66666666665444
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.02 E-value=0.34 Score=44.07 Aligned_cols=107 Identities=15% Similarity=0.073 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHc-----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHh
Q 008633 424 HAAMMMYKKARKVGCKLS---LTAYKLLLRRLSG-----FGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNI-GQLE 494 (558)
Q Consensus 424 ~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~ 494 (558)
..|...++++.+.. |+ -..|..+...|.+ .|+.++|.+.|++..+.+-.-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 44555555555543 33 4566777777777 488888888888888753111366777777877774 8888
Q ss_pred HHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 495 NAVLVMEESLRKGFC--PSRLVYSKLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 495 ~A~~~~~~m~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
+|.+.+++.+..... |+....+ .+.-++|..+++++..
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan--------~~~q~eA~~LL~~~~d 297 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLV--------ILSQKRARWLKAHVQD 297 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHH--------HHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHH--------HHHHHHHHHHHHHhHH
Confidence 888888888877555 5533222 2233566666665543
No 231
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.38 E-value=10 Score=40.78 Aligned_cols=16 Identities=13% Similarity=0.042 Sum_probs=7.1
Q ss_pred hcCCHHHHHHHHHHhh
Q 008633 349 SVGDFDECMKYYKGMS 364 (558)
Q Consensus 349 ~~g~~~~A~~~~~~m~ 364 (558)
-.|+.+.+..+.+.+.
T Consensus 536 ~~g~~e~~~~li~~L~ 551 (963)
T 4ady_A 536 NYGRQELADDLITKML 551 (963)
T ss_dssp TTTCGGGGHHHHHHHH
T ss_pred hCCChHHHHHHHHHHH
Confidence 3344444444444444
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.02 E-value=1.7 Score=34.89 Aligned_cols=53 Identities=8% Similarity=0.019 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 008633 281 GQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCG 334 (558)
Q Consensus 281 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 334 (558)
++.++|.++|+.+++.+-.- ...|.....--.+.|++.+|.+++...+..+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 45555555555554432111 333333334444555555555555555555444
No 233
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.54 E-value=13 Score=39.90 Aligned_cols=241 Identities=12% Similarity=0.034 Sum_probs=118.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCH--HHHH
Q 008633 272 IVISGWSKLGQVVEMERVLKEIVAEGF-------SPDSLTFSFLIEGLGRAGR-IDDAIEVFDTMKEKGCGPDT--NAYN 341 (558)
Q Consensus 272 ~li~~~~~~g~~~~A~~~~~~m~~~g~-------~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~p~~--~~~~ 341 (558)
.+.-+....|..+++..++.......- .+....-.++.-+++-.|. -+++.+.+..+....-. .. ..--
T Consensus 416 llaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~-~~~~~Aal 494 (963)
T 4ady_A 416 LYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSA-TSGEAAAL 494 (963)
T ss_dssp HHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHH
Confidence 344445555655667776666554311 0111112222222322332 13445555554443110 01 1111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHH
Q 008633 342 AVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLIS--GLLKSRKVADALEVFEEMLDRGIVPSTGTI--TSFLEPL 417 (558)
Q Consensus 342 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~--~~ll~~~ 417 (558)
+|...+.-.|+-+....++..+.+. .+......+.- ++...|+.+.+..+++.+.... .|....- .++.-+|
T Consensus 495 ALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAy 570 (963)
T 4ady_A 495 GMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAY 570 (963)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHT
T ss_pred HHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHh
Confidence 2333444567777777777766653 12233333333 3446678887777777776631 2222211 1233456
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-hHH
Q 008633 418 CSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQL-ENA 496 (558)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A 496 (558)
+..|+.....+++..+.... ..++.....+.-++...|+.+.+.++++.+.+.+ .|....-.++.-|....|+. .+|
T Consensus 571 aGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~a 648 (963)
T 4ady_A 571 AGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSA 648 (963)
T ss_dssp TTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHH
T ss_pred cCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHH
Confidence 66778766666777776532 2233333344444555677666677776666543 34443334444445555553 567
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008633 497 VLVMEESLRKGFCPSRLVYSKLSNKL 522 (558)
Q Consensus 497 ~~~~~~m~~~g~~p~~~~~~~l~~~~ 522 (558)
+..+..+.. .+|..+-..-+.++
T Consensus 649 id~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 649 IDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp HHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHcc---CCCHHHHHHHHHHH
Confidence 778877764 24544443333333
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.01 E-value=2.3 Score=34.25 Aligned_cols=51 Identities=6% Similarity=0.011 Sum_probs=24.7
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 008633 456 GKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKG 507 (558)
Q Consensus 456 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 507 (558)
++.++|.++|+.+.+..-. =...|......-.++|+++.|.+++.+.+..+
T Consensus 74 ~D~d~aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 4445555555554432111 14444444444555555666666665555544
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.72 E-value=2 Score=33.49 Aligned_cols=81 Identities=14% Similarity=0.097 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHhHHHH
Q 008633 424 HAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGM---LLDLWHEMQESGYPS--DGEIYEYVIAGLCNIGQLENAVL 498 (558)
Q Consensus 424 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~ 498 (558)
..+.+-|......|. ++..+--.+..++.+...... ++.++.++...+ .| .....-.+.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344444444444332 555565566666666665544 666666666543 22 23344445556777777777777
Q ss_pred HHHHHHhC
Q 008633 499 VMEESLRK 506 (558)
Q Consensus 499 ~~~~m~~~ 506 (558)
+++.+++.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777755
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.53 E-value=2 Score=33.53 Aligned_cols=82 Identities=11% Similarity=0.077 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhH---HHHHHHHhhcCCCC--ChhhHHHHHHHHHhcCCHHHHHH
Q 008633 214 VYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGA---ASSLFNSMKGKVLF--NVMTYNIVISGWSKLGQVVEMER 288 (558)
Q Consensus 214 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~---A~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~A~~ 288 (558)
...+.+-|......|. ++..+--.+..++++..+... ++.+++.+.....| .....-.|.-++.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3444444444444332 455555556666666655444 55666655444322 23334455566666667777766
Q ss_pred HHHHHHHc
Q 008633 289 VLKEIVAE 296 (558)
Q Consensus 289 ~~~~m~~~ 296 (558)
.++.+.+.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666654
No 237
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=90.87 E-value=9.9e-05 Score=71.28 Aligned_cols=234 Identities=15% Similarity=0.084 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008633 233 AESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGL 312 (558)
Q Consensus 233 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 312 (558)
+.+|..|..+..+.+++.+|++.|= +.. |...|..+|....+.|.+++-.+++...++..-.|. .=+.|+-+|
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI--kA~---Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ay 126 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI--KAD---DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFAL 126 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC--CCS---CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH--hCC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHH
Confidence 3456666777766676666665442 222 556677777777777777777777765555433333 334677777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 313 GRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADAL 392 (558)
Q Consensus 313 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 392 (558)
++.++..+-.+++ -.||..-...+.+-|...|.++.|.-+|..+.. |..|..++.+.|++..|.
T Consensus 127 Ak~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 127 AKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp HTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSST
T ss_pred HhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHH
Confidence 7777755433332 224544455667777777777777766665442 333444555666666665
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC
Q 008633 393 EVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESG 472 (558)
Q Consensus 393 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 472 (558)
+.-++ .-+..||..+-.+|...+.+.-|...--.++-.. .....++..|-..|.+++.+.+++.-....
T Consensus 191 daArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglglE 259 (624)
T 3lvg_A 191 DGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGLE 259 (624)
T ss_dssp TTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTST
T ss_pred HHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Confidence 43221 2345667777777777777766644433332211 112234555777788888888887776432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 008633 473 YPSDGEIYEYVIAGLCNIGQLENAVLVMEE 502 (558)
Q Consensus 473 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 502 (558)
+.....|+-|.-.|++- +.++-.+.++.
T Consensus 260 -rAHmGmFTELaILYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 260 -RAHMGMFTELAILYSKF-KPQKMREHLEL 287 (624)
T ss_dssp -TCCHHHHHHHHHHHHSS-CTTHHHHHHTT
T ss_pred -chhHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 44666787777777765 45555555543
No 238
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=90.71 E-value=0.037 Score=53.82 Aligned_cols=215 Identities=13% Similarity=0.073 Sum_probs=129.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008633 162 DVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLW 241 (558)
Q Consensus 162 ~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 241 (558)
|...|..+|.+..+.|.+++-+..+...++..- +...=+.|+-+|++.++..+-.+++ -.|+..-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHH
Confidence 444577788888888888888777765554422 3334456777888887765533332 2356656667777
Q ss_pred HHHhcCCHhHHHHHHHHhhc---------------------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008633 242 CLCQRLHVGAASSLFNSMKG---------------------KVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSP 300 (558)
Q Consensus 242 ~~~~~~~~~~A~~~~~~m~~---------------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 300 (558)
-|...|.++.|.-+|..+.. +-..++.||-.+-.+|...+.+.-|.-.--.+.-. |
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a 229 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A 229 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H
Confidence 77777888777777766532 11236778888888888888877665544443321 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCC------CHH
Q 008633 301 DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSS-YNCEP------NMD 373 (558)
Q Consensus 301 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p------~~~ 373 (558)
| -...++..|-..|.+++.+.+++.-... -......|+-|.-.|++- +.++..+.++..-. -+++. ...
T Consensus 230 d--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ah 305 (624)
T 3lvg_A 230 D--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAH 305 (624)
T ss_dssp S--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTT
T ss_pred H--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 1 1223555666777777777777765532 123566777777777665 34444443332211 11111 234
Q ss_pred HHHHHHHHHHhcCCHHHHH
Q 008633 374 TYTRLISGLLKSRKVADAL 392 (558)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~ 392 (558)
.|.-++-.|+.-.+++.|.
T Consensus 306 LW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 306 LWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHhcchhHHHHH
Confidence 5777777777777777664
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.49 E-value=14 Score=36.21 Aligned_cols=50 Identities=14% Similarity=0.092 Sum_probs=36.4
Q ss_pred CChHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 008633 177 KFFDFMCNVLSDMAKE-----GVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLED 226 (558)
Q Consensus 177 ~~~~~a~~l~~~m~~~-----g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~ 226 (558)
|++++|++.+-.+.+. ...........++..|...|+++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6788888877666532 2344567788888889999999888877776654
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.20 E-value=0.88 Score=47.73 Aligned_cols=125 Identities=15% Similarity=0.104 Sum_probs=79.8
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHhC-CHHHHHHHHHHHHhC------CC-CCCH--
Q 008633 167 NVIVKALGRRKF-FDFMCNVLSDMAKEGVNPDLETL--SIVMDSFIRAG-QVYKAIQMLGRLEDF------GL-KFDA-- 233 (558)
Q Consensus 167 ~~li~~~~~~~~-~~~a~~l~~~m~~~g~~~~~~t~--~~li~~~~~~g-~~~~A~~~~~~~~~~------g~-~~~~-- 233 (558)
..++..+...++ ++.|+.+|+++.... |...++ ..++..+.+.+ +--+|++++.+..+. .. ..+.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 344455555666 588999999998864 332322 22333322222 233455555544321 11 1121
Q ss_pred --------HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 234 --------ESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEI 293 (558)
Q Consensus 234 --------~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 293 (558)
...+.=.+.+...|+++.|+++-++...-.|.+-.+|..|..+|.+.|+++.|+-.+..+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 112222344667899999999999988877888999999999999999999999888776
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.17 E-value=1.1 Score=43.36 Aligned_cols=54 Identities=4% Similarity=-0.029 Sum_probs=25.2
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 240 LWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEI 293 (558)
Q Consensus 240 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 293 (558)
+..+...|+.++|...++.+....|.+...|..+|.++.+.|+..+|++.|+.+
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333444444444444444444434444444444444444444444444444443
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.04 E-value=3.7 Score=43.05 Aligned_cols=54 Identities=19% Similarity=0.081 Sum_probs=38.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 484 IAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 484 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
...|...|+++-|+++.++++.. .|+ -.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34456677788888888777754 344 6778888888888888888877777664
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.69 E-value=1.8 Score=31.99 Aligned_cols=48 Identities=8% Similarity=0.091 Sum_probs=29.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 008633 178 FFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLE 225 (558)
Q Consensus 178 ~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~ 225 (558)
+.-+..+-+..+....+.|++....+.+++|-+.+++..|+.+++-++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334455555555555566666666666666666666666666666655
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.50 E-value=4.2 Score=39.18 Aligned_cols=75 Identities=8% Similarity=0.054 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 008633 445 YKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLR-----KGFCPSRLVYSKLS 519 (558)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l~ 519 (558)
...++..+...|+.++|...+..+.... +-+...|..++.++.+.|+..+|++.|+++.+ .|+.|...+-...-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4456667778888888888888877643 55777888888899999999999888888654 38888876554443
Q ss_pred H
Q 008633 520 N 520 (558)
Q Consensus 520 ~ 520 (558)
.
T Consensus 253 ~ 253 (388)
T 2ff4_A 253 R 253 (388)
T ss_dssp H
T ss_pred H
Confidence 3
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.25 E-value=17 Score=35.52 Aligned_cols=181 Identities=14% Similarity=0.130 Sum_probs=94.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHH
Q 008633 156 HPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKE-GVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAE 234 (558)
Q Consensus 156 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~-g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 234 (558)
......+......++..|...|+++...+.+.-+.+. |.. ......+++.+ ...+.... .++..
T Consensus 49 ~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~---------~~~l~~~~----~~d~~ 113 (445)
T 4b4t_P 49 ASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKV---------MEYLKSSK----SLDLN 113 (445)
T ss_dssp SCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHH---------HHHHHHHC----TTHHH
T ss_pred ccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHH---------HHHHhcCC----chhHH
Confidence 3345566788888999999999999887777666543 322 22222333322 12222111 11222
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcC-CCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHH
Q 008633 235 SLNVVLWCLCQRLHVGAASSLFNSMKGK-VLF---NVMTYNIVISGWSKLGQVVEMERVLKEIVAE--GFSPD---SLTF 305 (558)
Q Consensus 235 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~ 305 (558)
+...++..+. ...++ +-. .......|...|...|++.+|.+++.++... |.... ...+
T Consensus 114 ~~~~~i~~l~-------------~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~ 180 (445)
T 4b4t_P 114 TRISVIETIR-------------VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFI 180 (445)
T ss_dssp HHHHHHHCCS-------------SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHH
T ss_pred HHHHHHHHHH-------------HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 2211111110 00011 111 1123345667777777777777777776543 21111 2345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 008633 306 SFLIEGLGRAGRIDDAIEVFDTMKE----KGCGPD--TNAYNAVISNYISVGDFDECMKYYKGMS 364 (558)
Q Consensus 306 ~~ll~~~~~~g~~~~a~~~~~~m~~----~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 364 (558)
...++.|...+++.+|..++.++.. ....|+ ...|...+..+...+++.+|-+.|.++.
T Consensus 181 l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 181 LEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5566677777777777777766532 122222 2345556666667777777776666654
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.06 E-value=8.4 Score=43.12 Aligned_cols=191 Identities=14% Similarity=0.045 Sum_probs=104.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------------------
Q 008633 238 VVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGF------------------- 298 (558)
Q Consensus 238 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------------------- 298 (558)
.++..+.+.+..+.|.++...... +....-.+..+|...|++++|...|.+... |+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS----DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccc
Confidence 345555566666666555443332 344444556666667777777666654311 00
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 008633 299 ----SPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDT----NAYNAVISNYISVGDFDECMKYYKGMSSYNCEP 370 (558)
Q Consensus 299 ----~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 370 (558)
..-..-|..++..+-+.+.++.+.++-...++....-+. ..|..+.+++...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 011234667777777888888877776666554322121 2567778888888888888888877766533
Q ss_pred CHHHHHHHHHHHHhcC------------CHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChh-HHHHHHHHHHH
Q 008633 371 NMDTYTRLISGLLKSR------------KVADALEVFEEMLDRG--IVPSTGTITSFLEPLCSYGPPH-AAMMMYKKARK 435 (558)
Q Consensus 371 ~~~~~~~li~~~~~~g------------~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~ 435 (558)
-......+|..+|..| ..++..+++....+.. +......|..|=.-....|++. .|.-+|+.+.+
T Consensus 970 r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 3445666666666544 4455556654432211 1111122333333334456654 44556666554
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.27 E-value=13 Score=41.62 Aligned_cols=146 Identities=10% Similarity=0.040 Sum_probs=99.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------------------
Q 008633 342 AVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGI------------------ 403 (558)
Q Consensus 342 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------------------ 403 (558)
.++..+.+.+..+.|.++..... .+...--.+..+|...|++++|.+.|.+... |+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 35556666777777766554433 2444444566778889999999999876421 11
Q ss_pred -----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCC
Q 008633 404 -----VPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLS----LTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYP 474 (558)
Q Consensus 404 -----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 474 (558)
..-...|..++..+.+.+.++.+.++-+.+.+....-+ ...|..+.+.+...|++++|...+-.+.+...
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 11123467777788888999999988887776432222 23678889999999999999999988876543
Q ss_pred CCHHHHHHHHHHHHhcCCHhH
Q 008633 475 SDGEIYEYVIAGLCNIGQLEN 495 (558)
Q Consensus 475 p~~~~~~~li~~~~~~g~~~~ 495 (558)
-......++..+|..|..+.
T Consensus 970 -r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHHH
T ss_pred -HHHHHHHHHHHHHhCCChhh
Confidence 34577778888887665443
No 248
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.30 E-value=21 Score=33.15 Aligned_cols=164 Identities=15% Similarity=0.074 Sum_probs=90.0
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHH
Q 008633 238 VVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERV----LKEIVAEGFSPDSLTFSFLIEGLG 313 (558)
Q Consensus 238 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 313 (558)
++..-|.+.+++++|.+++..-. ..+.+.|+...|.++ ++-+.+.++++|..+...++..+.
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~GA--------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASVS--------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCHHHHHHHHHHHH--------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34445667777777777654321 123334444444333 344445566677666666666655
Q ss_pred hcCCHH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC
Q 008633 314 RAGRID-DAIEVFDTMK----EKG--CGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSR 386 (558)
Q Consensus 314 ~~g~~~-~a~~~~~~m~----~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 386 (558)
....-+ .=.++.++++ +.| ..-|......+...|.+.+++.+|+..|- . |..++...|..++.-+.+.+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTS
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhc
Confidence 443211 1122222222 222 33467788888999999999999988883 2 32344466766665555444
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008633 387 KVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKAR 434 (558)
Q Consensus 387 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (558)
... .++...-.+++. |...++...|..+++...
T Consensus 182 ~~~--------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 182 ESH--------------TAPLYCARAVLP-YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp CGG--------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHH
T ss_pred CCc--------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHH
Confidence 322 122333344443 556678888877665544
No 249
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.48 E-value=5.4 Score=31.24 Aligned_cols=59 Identities=15% Similarity=0.149 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHH
Q 008633 216 KAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVI 274 (558)
Q Consensus 216 ~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li 274 (558)
+..+-++.+....+.|++.+..+.+.++-+.+++..|.++|+.++.+..+....|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 33444444445555555555555555555555555555555555544333333444443
No 250
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.38 E-value=23 Score=32.84 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHH----HHHHHhCCCCCCHHHHHHHH
Q 008633 165 SYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQM----LGRLEDFGLKFDAESLNVVL 240 (558)
Q Consensus 165 ~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~----~~~~~~~g~~~~~~~~~~ll 240 (558)
.|.++..-|.+.+++++|++++..-. ..+.+.|+...|.++ ++-..+.++++|......|+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 56677777888888888887765432 234455555544443 34455677777877777777
Q ss_pred HHHHhcCCHhHH-HHHHHHhh-------cCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 008633 241 WCLCQRLHVGAA-SSLFNSMK-------GKVLFNVMTYNIVISGWSKLGQVVEMERVL 290 (558)
Q Consensus 241 ~~~~~~~~~~~A-~~~~~~m~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 290 (558)
..+.....-+-. ..+.+++. ....-|......+...|.+.+++.+|...|
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 766554432111 11122111 111225555666666677777766666655
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.44 E-value=7.3 Score=28.79 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=38.2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008633 457 KCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLS 519 (558)
Q Consensus 457 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 519 (558)
+.-++.+-++.+...++.|++.+..+.+.+|.+.+++..|+++++-...+ ..+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 34455556666666667777777777777777777777777777765544 122234455544
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.93 E-value=11 Score=29.54 Aligned_cols=73 Identities=10% Similarity=0.088 Sum_probs=48.4
Q ss_pred CCCCCHHHHHHHHHHHHcCCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC
Q 008633 437 GCKLSLTAYKLLLRRLSGFGKC---GMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS 511 (558)
Q Consensus 437 ~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 511 (558)
+-.|+..+--.+..++.+..+. .+++.+++++.+.+..-....+-.+.-|+.+.|++++|.++.+.+++. .|+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Confidence 4456666666666677776554 456777777776541113445666667788888888888888888755 565
No 253
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=83.19 E-value=44 Score=34.23 Aligned_cols=134 Identities=10% Similarity=-0.047 Sum_probs=64.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 008633 174 GRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAAS 253 (558)
Q Consensus 174 ~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~ 253 (558)
.+.|++..+..+...+...-+ ..-..|..+...+ ......+...++.+-.. .+.....-+.-+..+.+.+++....
T Consensus 17 ~~~~~~~~~~~l~~~l~~~pL-~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~--~p~~~~Lr~~~l~~l~~~~~w~~~l 92 (618)
T 1qsa_A 17 WDNRQMDVVEQMMPGLKDYPL-YPYLEYRQITDDL-MNQPAVTVTNFVRANPT--LPPARTLQSRFVNELARREDWRGLL 92 (618)
T ss_dssp HHTTCHHHHHHHSGGGTTSTT-HHHHHHHHHHHTG-GGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHCCCHHHHHHHHHhhcCCCc-HHHHHHHHHHhCc-ccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHhCCCHHHHH
Confidence 345777766666555532211 1112333332222 11234444444433221 1222233345556666677776666
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008633 254 SLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAG 316 (558)
Q Consensus 254 ~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 316 (558)
..+.. .|.+...-.....+....|+..+|....+.+-..|. .....+..++..+.+.|
T Consensus 93 ~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 93 AFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTT
T ss_pred HhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCC
Confidence 54432 234555555666777777777777666666655442 22334444555554444
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.69 E-value=6.4 Score=32.23 Aligned_cols=35 Identities=14% Similarity=0.060 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc
Q 008633 511 SRLVYSKLSNKLLASNKLESAYNLFRKIKIARQND 545 (558)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 545 (558)
+...-..+..+|.+.|++++|+..++.+....-.|
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~ 155 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTP 155 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCH
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCH
Confidence 34555568888899999999999888776544443
No 255
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.24 E-value=17 Score=28.85 Aligned_cols=73 Identities=10% Similarity=0.088 Sum_probs=49.9
Q ss_pred CCCCCHHHHHHHHHHHHcCCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC
Q 008633 437 GCKLSLTAYKLLLRRLSGFGKC---GMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS 511 (558)
Q Consensus 437 ~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 511 (558)
+-.++..+--.+..++.+..+. .+++.+++++...+..-.....-.+.-++.+.|++++|.++.+.+++. .|+
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 3356777777777777777654 456778877776432223445555666788888888888888888876 565
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.49 E-value=17 Score=28.42 Aligned_cols=66 Identities=9% Similarity=-0.044 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 474 PSDGEIYEYVIAGLCNIGQ---LENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 474 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
.|+..+--.+.+++.+..+ ..+++.++++..+.+..-....+-.|.-++.+.|++++|.++.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344444444444444433 23455555555543310113444445555555555555555555554
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.63 E-value=38 Score=31.15 Aligned_cols=168 Identities=7% Similarity=-0.017 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHH
Q 008633 339 AYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEV----FEEMLDRGIVPSTGTITSFL 414 (558)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~~~~~ll 414 (558)
.|.++..=|.+.+++++|++++..-. ..+.+.|+...|.++ ++-..+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44555566666667777766654332 223344555444443 33334456666666665555
Q ss_pred HHHHhcCChh-HHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008633 415 EPLCSYGPPH-AAMMMYKKARK----VG--CKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGL 487 (558)
Q Consensus 415 ~~~~~~g~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 487 (558)
..+.....-+ .-.++++++.+ .| ..-++.....+...|.+.|++.+|...|- .|-.-+...+..++.-+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHH
Confidence 5444322111 12233333332 11 12256667777777777777777766553 11111233444444433
Q ss_pred Hhc---CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 488 CNI---GQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 488 ~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
... |...++--++ ...+--|.-.|+...|..+++...+
T Consensus 176 ~~~~~~~~~~e~dlf~---------------~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 176 LCQVDDIEDSTVAEFF---------------SRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHTTCCCHHHHHHHH---------------HHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHhcCCCCcchHHHHH---------------HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333 3333221111 1222335567888888888877654
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=79.29 E-value=21 Score=29.25 Aligned_cols=60 Identities=13% Similarity=0.051 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 008633 166 YNVIVKALGRRKFFDFMCNVLSDMAKE-GVNPD-------LETLSIVMDSFIRAGQVYKAIQMLGRLE 225 (558)
Q Consensus 166 ~~~li~~~~~~~~~~~a~~l~~~m~~~-g~~~~-------~~t~~~li~~~~~~g~~~~A~~~~~~~~ 225 (558)
+-.-+..+...|.++.|.-+.+.+... +..|+ ..++..+.+++...|++..|...|++..
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 334466777888888888777775433 11233 1356667788889999999999998864
No 259
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=78.68 E-value=17 Score=30.81 Aligned_cols=57 Identities=16% Similarity=0.081 Sum_probs=40.4
Q ss_pred CCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC
Q 008633 455 FGKCGMLLDLWHEMQESGYPSD-GEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS 511 (558)
Q Consensus 455 ~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 511 (558)
.+...++.++|..|...|+--. ...|......+-..|++.+|.++|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3446677888888877655443 34667777777788888888888888887776664
No 260
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=78.48 E-value=41 Score=30.91 Aligned_cols=112 Identities=18% Similarity=0.116 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHH----HHHHHHhCCCCCCHHHHHHHH
Q 008633 165 SYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQ----MLGRLEDFGLKFDAESLNVVL 240 (558)
Q Consensus 165 ~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~----~~~~~~~~g~~~~~~~~~~ll 240 (558)
.|.++..-|.+.+++++|++++..-. ..+.+.|+...|-+ +++-..+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 46677777788888888887765432 23445566555444 355555677888888877777
Q ss_pred HHHHhcCCHh-HHHHHHHHhh-------cCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 008633 241 WCLCQRLHVG-AASSLFNSMK-------GKVLFNVMTYNIVISGWSKLGQVVEMERVLK 291 (558)
Q Consensus 241 ~~~~~~~~~~-~A~~~~~~m~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 291 (558)
..+.....-+ .=.++++.+. +...-+......+...|.+.|++.+|...|-
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 7766543211 1122222221 1122366777778888888888877777654
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=78.44 E-value=23 Score=31.60 Aligned_cols=56 Identities=14% Similarity=0.054 Sum_probs=42.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhC
Q 008633 171 KALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDF 227 (558)
Q Consensus 171 ~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~ 227 (558)
..+.+.|..++++..+..-++.. +-|...-..++..+|-.|++++|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34567788888888887777764 457777788888888888888888877777664
No 262
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=77.54 E-value=22 Score=27.86 Aligned_cols=61 Identities=13% Similarity=0.229 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 008633 319 DDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLIS 380 (558)
Q Consensus 319 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 380 (558)
-+..+-++.+....+.|++.+..+.+++|-+.+++.-|.++|+.++.+- .+....|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 3455556666666777777777777777777777777777777766432 233444555543
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.06 E-value=21 Score=26.25 Aligned_cols=78 Identities=15% Similarity=0.178 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 317 RIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFE 396 (558)
Q Consensus 317 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 396 (558)
..++|..+-+.+...|. ...+--+-+..+...|++++|..+.+.+- .||...|.+|-. .+.|..+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45666666666665543 22222222345567777777777665544 677777665543 35677777777766
Q ss_pred HHHHCC
Q 008633 397 EMLDRG 402 (558)
Q Consensus 397 ~m~~~~ 402 (558)
++..+|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 666655
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=75.59 E-value=22 Score=26.21 Aligned_cols=78 Identities=10% Similarity=0.161 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 317 RIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFE 396 (558)
Q Consensus 317 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 396 (558)
..++|..+-+.+...|. ...+--+-+..+...|++++|..+.+.+- .||...|.+|-. .+.|..+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45666666666655543 12222222344566777777777666554 677776665543 35666666666666
Q ss_pred HHHHCC
Q 008633 397 EMLDRG 402 (558)
Q Consensus 397 ~m~~~~ 402 (558)
++..+|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 665554
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=72.10 E-value=9 Score=34.24 Aligned_cols=53 Identities=9% Similarity=-0.056 Sum_probs=30.9
Q ss_pred HHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 243 LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVA 295 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (558)
+.+.|++++|++....-....|.|...-..++..+|-.|+++.|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455566665555555445555666666666666666666666665555554
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.68 E-value=29 Score=33.72 Aligned_cols=61 Identities=13% Similarity=0.058 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 008633 304 TFSFLIEGLGRAGRIDDAIEVFDTMKEKG--CGPDTNAYNAVISNYISVGDFDECMKYYKGMS 364 (558)
Q Consensus 304 t~~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 364 (558)
+...+...|.+.|++++|.+.+.++...- ..--...+-.++..+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44556666666666666666666665431 22223455555666666666666666666553
No 267
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=68.67 E-value=42 Score=26.62 Aligned_cols=48 Identities=10% Similarity=0.000 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHC
Q 008633 424 HAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQES 471 (558)
Q Consensus 424 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 471 (558)
.+++.+++.+.+.+..-.....-.|.-++.+.|++++|.++.+.+.+.
T Consensus 59 ~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 59 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 345555655555432222333344445566666666666666666654
No 268
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=68.61 E-value=42 Score=26.99 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=22.4
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC
Q 008633 461 LLDLWHEMQESGYPSD-GEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCP 510 (558)
Q Consensus 461 A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 510 (558)
+.++|..|...|+--. ...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4444554444433222 2234444444444455555555555544444444
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.63 E-value=36 Score=33.05 Aligned_cols=59 Identities=7% Similarity=-0.165 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhcC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 236 LNVVLWCLCQRLHVGAASSLFNSMKGK---VLFNVMTYNIVISGWSKLGQVVEMERVLKEIV 294 (558)
Q Consensus 236 ~~~ll~~~~~~~~~~~A~~~~~~m~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 294 (558)
...+...|.+.|+++.|.+.|.++... ...-...+-.+|+.+...+++..+...+.+..
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344555555555555555555555321 11233445555555555666666655555543
No 270
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=65.37 E-value=61 Score=27.27 Aligned_cols=49 Identities=14% Similarity=-0.052 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 196 PDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLH 248 (558)
Q Consensus 196 ~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~ 248 (558)
+|...-...+..+.+.|.. .+...+..+.+ .++..+-...+.++.+.++
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCC
Confidence 3444444555555555542 22222222222 2344444444444444444
No 271
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=64.57 E-value=11 Score=33.76 Aligned_cols=82 Identities=9% Similarity=-0.011 Sum_probs=34.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHH
Q 008633 168 VIVKALGRRKFFDFMCNVLSDMAKEGVNPDLE---TLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAE--SLNVVLWC 242 (558)
Q Consensus 168 ~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~---t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~~~ll~~ 242 (558)
..+...++.|+.+....++ +.|..++.. .-.+.+...+..|+.+-+ +.+.+.|..++.. ...+.+..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDIV----ELLLRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTCCCHHHH
T ss_pred hHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCCcccCCCCCCHHHH
Confidence 3444555666665444333 344333211 112234444556665433 3333444433321 11123333
Q ss_pred HHhcCCHhHHHHHHH
Q 008633 243 LCQRLHVGAASSLFN 257 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~ 257 (558)
.+..|+.+-+..+++
T Consensus 79 A~~~~~~~~v~~Ll~ 93 (285)
T 1wdy_A 79 AAIAGSVKLLKLFLS 93 (285)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 444555554444444
No 272
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=63.32 E-value=60 Score=26.47 Aligned_cols=55 Identities=13% Similarity=0.178 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH
Q 008633 459 GMLLDLWHEMQESGYPSD-GEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRL 513 (558)
Q Consensus 459 ~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 513 (558)
+.+.++|..|...|+--. ...|......+-..|++.+|.++|+..++.+-.|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 446778888887766544 3466777777778888888888888888887777643
No 273
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=62.49 E-value=1.1e+02 Score=29.19 Aligned_cols=166 Identities=9% Similarity=-0.016 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCC-CC---CCHHHHHHHHHHHHhcC-CHhHHHHHHHHhhcCCCCChhhH--
Q 008633 198 LETLSIVMDSFIRAGQVYKAIQMLGRLEDFG-LK---FDAESLNVVLWCLCQRL-HVGAASSLFNSMKGKVLFNVMTY-- 270 (558)
Q Consensus 198 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g-~~---~~~~~~~~ll~~~~~~~-~~~~A~~~~~~m~~~~~~~~~~~-- 270 (558)
......+...|.+.|+.++..+++......= .- -.......+++.+.... ..+.-.++..+..+....+-.+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888888887765321 11 12344556666665543 22222233222211000011222
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHH
Q 008633 271 ----NIVISGWSKLGQVVEMERVLKEIVAEGFSPD-----SLTFSFLIEGLGRAGRIDDAIEVFDTMKEK--GCGPDTNA 339 (558)
Q Consensus 271 ----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~ 339 (558)
.-++..|...|++.+|.+++.++.+.=-..| ...|..-+..|...+++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 1466777777777777777777665311111 123444455566667777776666665432 12223322
Q ss_pred HHH----HHHHHH-hcCCHHHHHHHHHHh
Q 008633 340 YNA----VISNYI-SVGDFDECMKYYKGM 363 (558)
Q Consensus 340 ~~~----li~~~~-~~g~~~~A~~~~~~m 363 (558)
... -..++. ..+++..|...|-+.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 211 122334 566666666666554
No 274
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=62.23 E-value=44 Score=24.56 Aligned_cols=86 Identities=15% Similarity=0.126 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 008633 212 GQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLK 291 (558)
Q Consensus 212 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 291 (558)
...++|.-+-+.+...|. ...+--.-+..+...|++++|..+.+.+ ..||...|-+|.. .+.|-.+++...+.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~---c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN---PWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC---CCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC---CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 355666666666665442 2222222234466677777777665444 3567777666544 35677777777776
Q ss_pred HHHHcCCCCCHHHH
Q 008633 292 EIVAEGFSPDSLTF 305 (558)
Q Consensus 292 ~m~~~g~~p~~~t~ 305 (558)
++...| .|....|
T Consensus 93 ~la~sg-~p~~q~F 105 (115)
T 2uwj_G 93 GLGGSS-DPALADF 105 (115)
T ss_dssp HHHTCS-SHHHHHH
T ss_pred HHHhCC-CHHHHHH
Confidence 666655 3343333
No 275
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=61.68 E-value=36 Score=29.81 Aligned_cols=24 Identities=17% Similarity=0.087 Sum_probs=19.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 008633 168 VIVKALGRRKFFDFMCNVLSDMAK 191 (558)
Q Consensus 168 ~li~~~~~~~~~~~a~~l~~~m~~ 191 (558)
--++++....++++|++++++..+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456778888899999988887754
No 276
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=60.03 E-value=23 Score=30.64 Aligned_cols=86 Identities=9% Similarity=-0.005 Sum_probs=40.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHh
Q 008633 170 VKALGRRKFFDFMCNVLSDMAKEGVNPDLET--LSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAES--LNVVLWCLCQ 245 (558)
Q Consensus 170 i~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t--~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~--~~~ll~~~~~ 245 (558)
+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+- ++.+.+.|..++... -.+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 3445566777776666666655554433211 1123344445566543 333344444433211 1123344445
Q ss_pred cCCHhHHHHHHHHh
Q 008633 246 RLHVGAASSLFNSM 259 (558)
Q Consensus 246 ~~~~~~A~~~~~~m 259 (558)
.|+.+.+..+++..
T Consensus 89 ~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 89 HRSPTCLRALLDSA 102 (241)
T ss_dssp TTCHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHcC
Confidence 56665555555543
No 277
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=56.71 E-value=27 Score=31.01 Aligned_cols=50 Identities=14% Similarity=0.025 Sum_probs=23.5
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHhHHHHHHH
Q 008633 204 VMDSFIRAGQVYKAIQMLGRLEDFGLKFDAE---SLNVVLWCLCQRLHVGAASSLFN 257 (558)
Q Consensus 204 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~---~~~~ll~~~~~~~~~~~A~~~~~ 257 (558)
.+...++.|+.+....+++ .|..++.. .-.+.+...+..|+.+-+..+++
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 60 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 3444556677655444443 33332211 11234445555666655555554
No 278
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=56.69 E-value=1.3e+02 Score=28.20 Aligned_cols=69 Identities=12% Similarity=0.223 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHH
Q 008633 340 YNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRK--VADALEVFEEMLDRGIVPSTGT 409 (558)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~ 409 (558)
.+.++.-|...|+.++|.+.++++..... -...+...+..++-+.++ .+....++..+...|+.+....
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~f-hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcc-hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 45566677777777777777777752111 112333444444443322 3446666666666665544433
No 279
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=55.30 E-value=71 Score=24.76 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=11.3
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhh
Q 008633 238 VVLWCLCQRLHVGAASSLFNSMK 260 (558)
Q Consensus 238 ~ll~~~~~~~~~~~A~~~~~~m~ 260 (558)
.++.-|...|+.++|.+.++++.
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC
Confidence 34444444555555555555543
No 280
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=55.01 E-value=1.9e+02 Score=29.55 Aligned_cols=199 Identities=10% Similarity=0.027 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 282 QVVEMERVLKEIVAEGFSPDSLTFSFLIE----GLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECM 357 (558)
Q Consensus 282 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~----~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 357 (558)
+.+.|...+....+.+ ..+......+-. .....+...++...+....... .+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 5566666666655432 122222222222 2222332334444555443332 23222333334444567777777
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 008633 358 KYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVG 437 (558)
Q Consensus 358 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 437 (558)
..|+.|.... .......-.+.+++...|+.++|..+|..+.+. .+ .|. ++ +..+.|..-.. .. ..
T Consensus 306 ~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg-~l-Aa~~Lg~~~~~-~~------~~ 370 (618)
T 1qsa_A 306 TWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYP-MV-AAQRIGEEYEL-KI------DK 370 (618)
T ss_dssp HHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHH-HH-HHHHTTCCCCC-CC------CC
T ss_pred HHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHH-HH-HHHHcCCCCCC-CC------CC
Confidence 7777665431 112333344555666667777777777766531 11 122 22 12222321000 00 00
Q ss_pred CCC---CHH---HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 008633 438 CKL---SLT---AYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVME 501 (558)
Q Consensus 438 ~~~---~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 501 (558)
..+ ... .-..-+..+...|....|...|..+.+. .+......+.......|..+.++....
T Consensus 371 ~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 000 000 0112234466778888888777777653 233333444445556677776665443
No 281
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=54.53 E-value=57 Score=28.15 Aligned_cols=53 Identities=15% Similarity=0.109 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC
Q 008633 459 GMLLDLWHEMQESGYPSD-GEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS 511 (558)
Q Consensus 459 ~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 511 (558)
+++.++|..|...|+--. ...|......+-..|++.+|..+|+.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 466677777776665443 33566666667777777777777777777665563
No 282
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=53.93 E-value=59 Score=26.12 Aligned_cols=22 Identities=9% Similarity=0.060 Sum_probs=10.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHh
Q 008633 238 VVLWCLCQRLHVGAASSLFNSM 259 (558)
Q Consensus 238 ~ll~~~~~~~~~~~A~~~~~~m 259 (558)
.++.-|...|+.++|...++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444444445555555555544
No 283
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=51.78 E-value=69 Score=23.60 Aligned_cols=79 Identities=15% Similarity=0.037 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 008633 212 GQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLK 291 (558)
Q Consensus 212 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 291 (558)
...++|.-+-+.+...|. ...+--.-+..+...|++++|..+.+.+- .||...|-+|... +.|-.+++...+.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c---~pdlepw~ALce~--rlGl~s~le~rL~ 93 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA---YPDLEPWLALCEY--RLGLGSALESRLN 93 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC---CGGGHHHHHHHHH--HHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC---CchHHHHHHHHHH--hcccHHHHHHHHH
Confidence 345666666666655442 11122222344566677777766655443 4566666655443 4566666666666
Q ss_pred HHHHcC
Q 008633 292 EIVAEG 297 (558)
Q Consensus 292 ~m~~~g 297 (558)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 665554
No 284
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=49.70 E-value=14 Score=31.12 Aligned_cols=19 Identities=0% Similarity=-0.087 Sum_probs=9.7
Q ss_pred HHHHHhcCCHhHHHHHHHH
Q 008633 240 LWCLCQRLHVGAASSLFNS 258 (558)
Q Consensus 240 l~~~~~~~~~~~A~~~~~~ 258 (558)
+...+..|+.+-+..+++.
T Consensus 76 l~~A~~~~~~~~~~~Ll~~ 94 (201)
T 3hra_A 76 YLYAGAQGRTEILAYMLKH 94 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhc
Confidence 3344455666555555543
No 285
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=47.50 E-value=23 Score=32.02 Aligned_cols=19 Identities=21% Similarity=0.121 Sum_probs=8.9
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 008633 344 ISNYISVGDFDECMKYYKG 362 (558)
Q Consensus 344 i~~~~~~g~~~~A~~~~~~ 362 (558)
+...+..|+.+-+..+++.
T Consensus 165 L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHc
Confidence 3344455555544444443
No 286
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=45.66 E-value=27 Score=30.05 Aligned_cols=15 Identities=0% Similarity=-0.095 Sum_probs=6.3
Q ss_pred HHHhcCCHhHHHHHH
Q 008633 242 CLCQRLHVGAASSLF 256 (558)
Q Consensus 242 ~~~~~~~~~~A~~~~ 256 (558)
..+..|+.+-+..++
T Consensus 48 ~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 48 WAAINNRIDLVKYYI 62 (240)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHhCCHHHHHHHH
Confidence 334444444444333
No 287
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=45.47 E-value=61 Score=27.76 Aligned_cols=53 Identities=9% Similarity=0.046 Sum_probs=29.6
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHhHHHHHHH
Q 008633 205 MDSFIRAGQVYKAIQMLGRLEDFGLKFDAE--SLNVVLWCLCQRLHVGAASSLFN 257 (558)
Q Consensus 205 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~~~ll~~~~~~~~~~~A~~~~~ 257 (558)
+...++.|+.+.+..+++.+.+.|..++.. ...+.+...+..|+.+-+..+++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 67 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH
Confidence 445566788777777777666555444321 11233444556666665555554
No 288
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=44.31 E-value=2.8e+02 Score=28.49 Aligned_cols=343 Identities=10% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHH
Q 008633 168 VIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLED-----FGLKFDAESLNVVLWC 242 (558)
Q Consensus 168 ~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~-----~g~~~~~~~~~~ll~~ 242 (558)
.+|-.|.|.|.+++|.++.++.... ..--...|...+..++...+-.--.++-.++.. ....++...|-..+..
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~s~~~~L~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~ 235 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYASSKDHGLPVEYSTKLHTEYNQHIKSSLDGDPYRLAVYK 235 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC------------------------------CHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q ss_pred HHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008633 243 LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLG-----------QVVEMERVLKEIVAEGFSPDSLTFSFLIEG 311 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 311 (558)
..-..+.. +.-...+..++.-|--+=-.+++.+ -+++..+.+.+.-+.-+.+ .....
T Consensus 236 Iig~cD~~------~~~~~~v~~siED~LWl~L~lvre~~~~~~~~~e~ytL~~LQ~~I~~yGe~~F~~------lYf~v 303 (661)
T 2qx5_A 236 LIGRCDLS------RKNIPAVTLSIEDWLWMHLMLIKEKDAENDPVYERYSLEDFQNIIISYGPSRFSN------YYLQT 303 (661)
T ss_dssp HHHTCCGG------GCCCGGGCCSHHHHHHHHHHTCCC----------CCCHHHHHHHHHHHCGGGGTT------CHHHH
T ss_pred HHhccccc------ccchHHHhccHHHHHHHHHHhccCCCcccccccccccHHHHHHHHHHhhhhhhhh------HHHHH
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc---CCH
Q 008633 312 LGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKS---RKV 388 (558)
Q Consensus 312 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~ 388 (558)
+.-.|+++.|.+.+-.. ...+.+.+...+..|.-.+- -+.+......-...-+..||..|.+. .+.
T Consensus 304 LlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~-------~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~ 372 (661)
T 2qx5_A 304 LLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI-------DSSTRLTKKPKRDIRFANILANYTKSFRYSDP 372 (661)
T ss_dssp HHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTTTTCH
T ss_pred HHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC-------CCcccccCCCcccccHHHHHHHHHHHhhcCCH
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-------------------HHHHHHH
Q 008633 389 ADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSL-------------------TAYKLLL 449 (558)
Q Consensus 389 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------------------~~~~~li 449 (558)
.+|.+.|--+...+.+.....+...+.-+.-..+ +-..++..+...|....- .......
T Consensus 373 ~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr--~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i~~~aA 450 (661)
T 2qx5_A 373 RVAVEYLVLITLNEGPTDVELCHEALRELVLETK--EFTVLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHTITEQAA 450 (661)
T ss_dssp HHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHC--CHHHHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcc--cHHHHcCCcCCCCCcCcchHHHhhcccccccHHHHHHHHHHHHH
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------------HhHHHHHHHHHHhC-----CC
Q 008633 450 RRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQ----------------LENAVLVMEESLRK-----GF 508 (558)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------------~~~A~~~~~~m~~~-----g~ 508 (558)
.-+...|++++|+.+|+...+. .--..+.|.++.-....-. ...|.++.+..... .+
T Consensus 451 ~~ae~~G~~~dAi~LY~La~~~--d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~ 528 (661)
T 2qx5_A 451 RRADEDGRIYDSILLYQLAEEY--DIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQI 528 (661)
T ss_dssp HHHHHTTCHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTS
T ss_pred HHHHHCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhc
Q ss_pred CCC-HHHHHHHHHH-----HHhcCCHHHHHHHHHHH
Q 008633 509 CPS-RLVYSKLSNK-----LLASNKLESAYNLFRKI 538 (558)
Q Consensus 509 ~p~-~~~~~~l~~~-----~~~~g~~~~A~~~~~~m 538 (558)
.+. ..|+..|++. +...|+++.|.+.++++
T Consensus 529 ~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 529 HVKNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
No 289
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=43.44 E-value=82 Score=27.52 Aligned_cols=23 Identities=4% Similarity=-0.201 Sum_probs=13.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 008633 413 FLEPLCSYGPPHAAMMMYKKARK 435 (558)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~ 435 (558)
-++.+....++++|..++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 34555666666666666665543
No 290
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=42.90 E-value=1.2e+02 Score=24.39 Aligned_cols=54 Identities=9% Similarity=0.011 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 008633 180 DFMCNVLSDMAKEGVNP-DLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDA 233 (558)
Q Consensus 180 ~~a~~l~~~m~~~g~~~-~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 233 (558)
+++.++|..|...|+-. -..-|..-...+...|++.+|.++|+.-++.+-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 34778888888887543 3456677777778888888888888888887777654
No 291
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=41.12 E-value=60 Score=26.46 Aligned_cols=51 Identities=12% Similarity=0.064 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC
Q 008633 425 AAMMMYKKARKVGCKLS-LTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPS 475 (558)
Q Consensus 425 ~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 475 (558)
.+..+|..|...|+-.. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 35556666666554333 3445555555666666666666666666665555
No 292
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=40.88 E-value=1.6e+02 Score=24.56 Aligned_cols=154 Identities=12% Similarity=0.021 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008633 231 FDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIE 310 (558)
Q Consensus 231 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 310 (558)
++..+-...+..+.+.+..+....+.+.+.. ++...-...+.++.+.++.+ +...+.++.. .++...-...+.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~ 103 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKD---EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAV 103 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 4555555556666666654444444444432 25555555666666666532 3333333332 245555555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 311 GLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVAD 390 (558)
Q Consensus 311 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 390 (558)
++.+.++.+ +...+..+.+ .++..+-...+.++.+.|+.+ +...+..+.+ .++..+-...+.++.+.+. .+
T Consensus 104 aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~ 174 (211)
T 3ltm_A 104 ALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ER 174 (211)
T ss_dssp HHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HH
T ss_pred HHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hh
Confidence 666666533 2233333332 235555555555555555533 3333333332 3455555555555555554 33
Q ss_pred HHHHHHHHHH
Q 008633 391 ALEVFEEMLD 400 (558)
Q Consensus 391 A~~~~~~m~~ 400 (558)
+...+.++.+
T Consensus 175 ~~~~L~~~l~ 184 (211)
T 3ltm_A 175 VRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444443
No 293
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=40.71 E-value=91 Score=28.56 Aligned_cols=290 Identities=10% Similarity=-0.013 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHH
Q 008633 167 NVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDA--ESLNVVLWCLC 244 (558)
Q Consensus 167 ~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~ll~~~~ 244 (558)
+..+...++.|+.+.+..+++.-..-....+..-++.|..++.... .++.+.+.+.|..++. ......+...+
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~-----~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~ 100 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSR-----EDIVELLLRHGADPVLRKKNGATPFILAA 100 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCC-----HHHHHHHHHcCCchhhhccCCCchhHHHH
Q ss_pred hcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH------------HHHHHH
Q 008633 245 QRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFS------------FLIEGL 312 (558)
Q Consensus 245 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~------------~ll~~~ 312 (558)
..+.......+.+....-...|..-++.+..+..... .++++.+.+.|..++...-. +.+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~-----~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A 175 (337)
T 4g8k_A 101 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK-----VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 175 (337)
T ss_dssp HHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHH
T ss_pred hcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCc-----HHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHH
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH--HHHHHHHhcCCHHH
Q 008633 313 GRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYT--RLISGLLKSRKVAD 390 (558)
Q Consensus 313 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~ 390 (558)
+..|+.+-+..++++.-..--..+..-.+.+..+...... .....+.+.+.+.|..++..... +.+...+..|..+.
T Consensus 176 ~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~-~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~ 254 (337)
T 4g8k_A 176 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD-SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL 254 (337)
T ss_dssp HHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCT-TTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHH
T ss_pred HHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCc-ccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHH
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 008633 391 ALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQE 470 (558)
Q Consensus 391 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 470 (558)
+..++..-...--..|..-.+.|..++.... .++.+.+.+.|..++..+ .+...++.|+.+ +.+.+.+
T Consensus 255 v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~-----~~iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~ 322 (337)
T 4g8k_A 255 VQRLLEQEHIEINDTDSDGKTALLLAVELKL-----KKIAELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLS 322 (337)
T ss_dssp HHHHHTSTTCCTTCBCTTSCBHHHHHHHTTC-----HHHHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHH
T ss_pred HHHHHHhcCCcccCcCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHH
Q ss_pred CCCCCCHHH
Q 008633 471 SGYPSDGEI 479 (558)
Q Consensus 471 ~~~~p~~~~ 479 (558)
.|-.||...
T Consensus 323 ~GA~~d~~~ 331 (337)
T 4g8k_A 323 HGAKEDFHP 331 (337)
T ss_dssp TTCCC----
T ss_pred CcCCCCCCC
No 294
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=40.41 E-value=2.2e+02 Score=26.11 Aligned_cols=49 Identities=10% Similarity=-0.004 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 008633 459 GMLLDLWHEMQESGYPSDGE--IYEYVIAGLCNIGQLENAVLVMEESLRKG 507 (558)
Q Consensus 459 ~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g 507 (558)
...+++-.-+...++.|.-. +...-+..+.+.+++..|..+.+++++.+
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 44445555555555554322 45556677788899999999999999775
No 295
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=40.06 E-value=2.5e+02 Score=26.67 Aligned_cols=166 Identities=7% Similarity=-0.046 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhCCCCCCHHH--
Q 008633 163 VKSYNVIVKALGRRKFFDFMCNVLSDMAKE-GVNP---DLETLSIVMDSFIRA-GQVYKAIQMLGRLEDFGLKFDAES-- 235 (558)
Q Consensus 163 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~-g~~~---~~~t~~~li~~~~~~-g~~~~A~~~~~~~~~~g~~~~~~~-- 235 (558)
..+...|...|.+.|+.++..+++...... +.-+ .......++..+... +..+.-.++..+..+..-. +..+
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 355667888888999999988888877543 1122 233455667776554 3344444444443321100 1112
Q ss_pred ----HHHHHHHHHhcCCHhHHHHHHHHhhcCCC------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHH
Q 008633 236 ----LNVVLWCLCQRLHVGAASSLFNSMKGKVL------FNVMTYNIVISGWSKLGQVVEMERVLKEIVAE--GFSPDSL 303 (558)
Q Consensus 236 ----~~~ll~~~~~~~~~~~A~~~~~~m~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~ 303 (558)
=..++..|...|++.+|.+++.++...+. .-...|-.-+..|...+++.++...+...... .+.++..
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 23678888999999999888888754211 11234666677788889999999888877642 2223333
Q ss_pred HHH--HHH--HHHH-hcCCHHHHHHHHHHHH
Q 008633 304 TFS--FLI--EGLG-RAGRIDDAIEVFDTMK 329 (558)
Q Consensus 304 t~~--~ll--~~~~-~~g~~~~a~~~~~~m~ 329 (558)
.-. ... ..+. ..+++..|...|-+..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 222 112 2234 6788888887776653
No 296
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=39.71 E-value=1.3e+02 Score=23.65 Aligned_cols=60 Identities=13% Similarity=-0.079 Sum_probs=34.1
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 467 EMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNK 527 (558)
Q Consensus 467 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 527 (558)
.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 345566665542 333444455555566677777777666545555555555566666554
No 297
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=38.97 E-value=1.3e+02 Score=23.17 Aligned_cols=67 Identities=15% Similarity=0.296 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCH
Q 008633 270 YNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGR--IDDAIEVFDTMKEKGCGPDT 337 (558)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~p~~ 337 (558)
.+.++.-|...|+.++|.+.++++...... .......+..++-+.++ .+.+.+++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 456788888889999999888887522111 22344445555555432 35567777777777655433
No 298
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.52 E-value=1.3e+02 Score=24.05 Aligned_cols=66 Identities=15% Similarity=0.301 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCC
Q 008633 270 YNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGR--IDDAIEVFDTMKEKGCGPD 336 (558)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~p~ 336 (558)
.+.++.-|...|+.++|.+.++++...... ....+..+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 456778888888888888888887521111 22334445555555332 3456677777776665533
No 299
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=35.88 E-value=1.4e+02 Score=23.26 Aligned_cols=35 Identities=11% Similarity=-0.004 Sum_probs=15.8
Q ss_pred CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008633 492 QLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASN 526 (558)
Q Consensus 492 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 526 (558)
..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555555443344444333334444433
No 300
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=35.45 E-value=91 Score=26.49 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=10.2
Q ss_pred HHHhcCCHHHHHHHHHHhhhCC
Q 008633 346 NYISVGDFDECMKYYKGMSSYN 367 (558)
Q Consensus 346 ~~~~~g~~~~A~~~~~~m~~~~ 367 (558)
..+..|+.+-+..+++.+.+.|
T Consensus 160 ~A~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 160 ILILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HHHTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHcCChHHHHHHHHHHHhcC
Confidence 3344455554444444444443
No 301
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=35.32 E-value=4.5e+02 Score=28.26 Aligned_cols=91 Identities=10% Similarity=0.032 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCC---hHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008633 166 YNVIVKALGRRKF---FDFMCNVLSDMAKEG----VNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNV 238 (558)
Q Consensus 166 ~~~li~~~~~~~~---~~~a~~l~~~m~~~g----~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 238 (558)
-..++...|+.|. .++|.+.|+.....+ +.||.. ..+...-.+.|..++-..+++...+.. +..--..
T Consensus 689 r~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ 763 (909)
T 4fke_A 689 EINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADK 763 (909)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHH
Confidence 3445555566554 456777777765432 444432 333344445676666666666666532 4444566
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhc
Q 008633 239 VLWCLCQRLHVGAASSLFNSMKG 261 (558)
Q Consensus 239 ll~~~~~~~~~~~A~~~~~~m~~ 261 (558)
++.+++...+.....++++....
T Consensus 764 ll~aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 764 LRSALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHHHHTTCCCHHHHHHHHHHTTC
T ss_pred HHHHhCCCCCHHHHHHHHHHHhC
Confidence 77777777777777777776654
No 302
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=35.28 E-value=1.2e+02 Score=23.85 Aligned_cols=62 Identities=11% Similarity=0.070 Sum_probs=39.5
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008633 187 SDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHV 249 (558)
Q Consensus 187 ~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~ 249 (558)
+.|.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 11 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 44566777666443 345555555666677888888887776666666666666666666544
No 303
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=34.84 E-value=3.2e+02 Score=26.41 Aligned_cols=21 Identities=14% Similarity=0.294 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHHhhhCCCCCC
Q 008633 351 GDFDECMKYYKGMSSYNCEPN 371 (558)
Q Consensus 351 g~~~~A~~~~~~m~~~~~~p~ 371 (558)
.+.+.|+.++.+|.+.|..|.
T Consensus 269 sd~daAl~~la~ml~~Gedp~ 289 (447)
T 3pvs_A 269 SAPDAALYWYARIITAGGDPL 289 (447)
T ss_dssp TCHHHHHHHHHHHHHTTCCHH
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 444455555555554443333
No 304
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=34.75 E-value=34 Score=30.82 Aligned_cols=145 Identities=13% Similarity=0.035 Sum_probs=66.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC
Q 008633 171 KALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAE--SLNVVLWCLCQRLH 248 (558)
Q Consensus 171 ~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~~~ll~~~~~~~~ 248 (558)
...+..|+.+-+..+++ .|..++...-.+.+...+..|+.+-+ +.+.+.|..++.. .-.+.+...+..|+
T Consensus 36 ~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~ 107 (285)
T 3kea_A 36 YYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALYYAVDSGN 107 (285)
T ss_dssp HHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHHHHHHcCC
Confidence 33445666654444333 34322221112234444556665543 3334445444321 11233445566777
Q ss_pred HhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 249 VGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSL-TFSFLIEGLGRAGRIDDAIEVFDT 327 (558)
Q Consensus 249 ~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~ 327 (558)
.+-+..+++.-..-...+..-+.+.+...+..|+.+- ++.+.+.|..+... .-.+.+...+..|+.+-+..+++.
T Consensus 108 ~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 108 MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSI----VSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHH----HHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 7777766665221111122222344455556676543 34444444333111 223445555677777766655554
No 305
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=34.61 E-value=1.4e+02 Score=23.77 Aligned_cols=60 Identities=17% Similarity=0.072 Sum_probs=32.6
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 467 EMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNK 527 (558)
Q Consensus 467 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 527 (558)
.+.+.|++++. --..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 17 ~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 17 SIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 34556655433 2334455555555566677777777665545555555555566666554
No 306
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=34.29 E-value=42 Score=31.70 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 374 TYTRLISGLLKSRKVADALEVFEEML 399 (558)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (558)
....+|.-|...|+.++|...++++.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 45778999999999999999999984
No 307
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=34.21 E-value=73 Score=30.62 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=10.2
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCC
Q 008633 487 LCNIGQLENAVLVMEESLRKGFCPS 511 (558)
Q Consensus 487 ~~~~g~~~~A~~~~~~m~~~g~~p~ 511 (558)
.+..|+.+ +++.+++.|..|+
T Consensus 351 A~~~g~~~----iv~~Ll~~ga~~~ 371 (437)
T 1n11_A 351 AAQQGHTD----IVTLLLKNGASPN 371 (437)
T ss_dssp HHHTTCHH----HHHHHHHTTCCSC
T ss_pred HHHCChHH----HHHHHHHCcCCCC
Confidence 34455543 3344445565555
No 308
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=33.93 E-value=89 Score=25.84 Aligned_cols=26 Identities=12% Similarity=0.040 Sum_probs=12.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC
Q 008633 310 EGLGRAGRIDDAIEVFDTMKEKGCGP 335 (558)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~m~~~g~~p 335 (558)
...+..|+.+.-.++.+.+.+.|..+
T Consensus 43 h~A~~~~~~~~~~~iv~~Ll~~Gadv 68 (186)
T 3t8k_A 43 YDVLRNNNDEARYKISMFLINKGADI 68 (186)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHcCCcchHHHHHHHHHHCCCCC
Confidence 33344444444444555555555443
No 309
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=33.17 E-value=56 Score=30.47 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 375 YTRLISGLLKSRKVADALEVFEEML 399 (558)
Q Consensus 375 ~~~li~~~~~~g~~~~A~~~~~~m~ 399 (558)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 5678888999999999999988874
No 310
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.84 E-value=89 Score=21.58 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=28.2
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 189 MAKEGVNPDLETLSIVMDSFIRAG-QVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLH 248 (558)
Q Consensus 189 m~~~g~~~~~~t~~~li~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~ 248 (558)
|.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 444555554433 23334443332 334455566655555444455555555555555443
No 311
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=32.65 E-value=1.3e+02 Score=23.80 Aligned_cols=59 Identities=8% Similarity=0.059 Sum_probs=32.7
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 467 EMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNK 527 (558)
Q Consensus 467 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 527 (558)
.+.+.|++++.. -..++..+...+ .-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 9 ~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 344566665543 233344444444 55677777777766555565555555566665553
No 312
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=32.51 E-value=2.5e+02 Score=24.40 Aligned_cols=131 Identities=9% Similarity=0.097 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCC-CCCCHHHHH
Q 008633 161 KDVKSYNVIVKALGRRK-FFDFMCNVLSDMAKEG-VNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFG-LKFDAESLN 237 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~-~~~~a~~l~~~m~~~g-~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~ 237 (558)
.+..-+..++..+...+ .-..+..+|..+...| -..+..-|..++..+......++...+|+.+-..| -..+..-+.
T Consensus 109 I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~Ef~ 188 (256)
T 2jul_A 109 VDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEML 188 (256)
T ss_dssp EEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHHHHHHHTCCSSSSCBCHHHHH
T ss_pred CCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 34444544444443222 2234555666654432 12333444444444433233344555555543221 123443343
Q ss_pred HHHHHHHh-cC-----------CHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 238 VVLWCLCQ-RL-----------HVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKE 292 (558)
Q Consensus 238 ~ll~~~~~-~~-----------~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 292 (558)
.++..+.. .| .-+.+..+|+.+.... ....+|.-++..+.+...+-++...|+.
T Consensus 189 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~-dG~Is~~Ef~~~~~~~~~l~~~l~~~d~ 254 (256)
T 2jul_A 189 AIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQ-DGVVTIDEFLETCQKDENIMNSMQLFEN 254 (256)
T ss_dssp HHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCST-TCSBCHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCC-CCcEeHHHHHHHHHhCHHHHHHHHhhcc
Confidence 33333221 12 2234555555553211 1234566666666666566555555544
No 313
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=32.24 E-value=60 Score=21.65 Aligned_cols=47 Identities=11% Similarity=0.080 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008633 479 IYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASN 526 (558)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 526 (558)
.++.++..++...-.++++..++++.+.| ..+..+|..-++.+++..
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQ 50 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQ 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHH
Confidence 45667777777777888888888888887 466777777777766643
No 314
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=32.24 E-value=62 Score=26.78 Aligned_cols=17 Identities=12% Similarity=0.120 Sum_probs=8.0
Q ss_pred HHHhcCCHHHHHHHHHH
Q 008633 346 NYISVGDFDECMKYYKG 362 (558)
Q Consensus 346 ~~~~~g~~~~A~~~~~~ 362 (558)
..+..|+.+-+..+++.
T Consensus 112 ~A~~~~~~~~v~~Ll~~ 128 (201)
T 3hra_A 112 PAAEKGHIDNVKLLLED 128 (201)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHc
Confidence 34445555544444443
No 315
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=31.77 E-value=2.3e+02 Score=23.88 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=35.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 008633 315 AGRIDDAIEVFDTMKEKGCGP-DTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEP 370 (558)
Q Consensus 315 ~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 370 (558)
.+...++.++|..|...|+-. -+..|......+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344556777777776665432 34456666666777777777777777766665555
No 316
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=31.29 E-value=1.5e+02 Score=23.49 Aligned_cols=59 Identities=10% Similarity=-0.009 Sum_probs=27.9
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 468 MQESGYPSDGEIYEYVIAGLCNIG-QLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNK 527 (558)
Q Consensus 468 m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 527 (558)
+.+.|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 8 l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 44455554432 222333333333 444566666666555444444444444455555543
No 317
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=31.16 E-value=71 Score=27.17 Aligned_cols=19 Identities=11% Similarity=0.006 Sum_probs=10.0
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 008633 170 VKALGRRKFFDFMCNVLSD 188 (558)
Q Consensus 170 i~~~~~~~~~~~a~~l~~~ 188 (558)
+...++.|+.+....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3444555666655555544
No 318
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=31.04 E-value=3.7e+02 Score=25.97 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 317 RIDDAIEVFDTMKEK--------GCGPDTNAYNAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 317 ~~~~a~~~~~~m~~~--------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
..++...+++..... ++..+......++.. ..|+..+++.+++.+..
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMAD 220 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHH
Confidence 455566666665542 233455556555554 46777777777776654
No 319
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=30.99 E-value=78 Score=27.29 Aligned_cols=51 Identities=4% Similarity=-0.031 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC
Q 008633 425 AAMMMYKKARKVGCKLS-LTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPS 475 (558)
Q Consensus 425 ~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 475 (558)
.+..+|..|...|+-.. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44444444444433222 2333444444444455555555554444443343
No 320
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=30.86 E-value=1.6e+02 Score=21.53 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=32.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-----hCCCCCCHHHHHHH
Q 008633 461 LLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESL-----RKGFCPSRLVYSKL 518 (558)
Q Consensus 461 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~~l 518 (558)
|.++.+++...|+.|+..+..-++..|...+- + |.++.++.+ ..|..|+..+.+.+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 45566666666777777777777776666553 2 444333332 23566665554443
No 321
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=30.71 E-value=5.5e+02 Score=27.80 Aligned_cols=48 Identities=15% Similarity=0.058 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcC
Q 008633 304 TFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDT----NAYNAVISNYISVG 351 (558)
Q Consensus 304 t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g 351 (558)
-|..++..+-+.+-++.+.++-+..++.--.-|. ..|+.+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5788888888889888888888877765322233 35666777776654
No 322
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=30.52 E-value=39 Score=28.99 Aligned_cols=78 Identities=8% Similarity=0.030 Sum_probs=35.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhc
Q 008633 172 ALGRRKFFDFMCNVLSDMAKEGVNPDLE--TLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAE---SLNVVLWCLCQR 246 (558)
Q Consensus 172 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~--t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~---~~~~ll~~~~~~ 246 (558)
..++.|+.+....++ +.|..++.. .-.+.+...+..|+.+-+.-++ +.|..++.. .-.+.+...+..
T Consensus 15 ~A~~~g~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~~~~~~~~~~~~~~t~L~~A~~~ 86 (240)
T 3eu9_A 15 KATQYGIYERCRELV----EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYI----SKGAIVDQLGGDLNSTPLHWATRQ 86 (240)
T ss_dssp HHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCBTTTTBCHHHHHHHH
T ss_pred HHHHcCChHHHHHHH----HcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHH----HcCCcchhhcCCcCCChhHHHHHc
Confidence 345666665544443 444433221 1123455566777765544443 344322211 112334445556
Q ss_pred CCHhHHHHHHH
Q 008633 247 LHVGAASSLFN 257 (558)
Q Consensus 247 ~~~~~A~~~~~ 257 (558)
|+.+-+..+++
T Consensus 87 ~~~~~v~~Ll~ 97 (240)
T 3eu9_A 87 GHLSMVVQLMK 97 (240)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 66665555554
No 323
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=28.80 E-value=1.6e+02 Score=23.37 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=38.2
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008633 187 SDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHV 249 (558)
Q Consensus 187 ~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~ 249 (558)
+.+.+.|++++. .-..++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 16 ~~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 445666766543 33445566666666777888888887766666666665666666666644
No 324
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=28.66 E-value=2.6e+02 Score=23.51 Aligned_cols=92 Identities=13% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 008633 308 LIEGLGRA---GRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGD-----FDECMKYYKGMSSYNCEPNMDTYTRLI 379 (558)
Q Consensus 308 ll~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~~~~p~~~~~~~li 379 (558)
+|.++.|+ .+.+.|+-++.+|++.| .|.-..-..++.+.-..|. +..|...++.....|.+--.......+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 95 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVV 95 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 008633 380 SGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~m~~ 400 (558)
--++.+-+-..+...++...+
T Consensus 96 iyLA~aPKSNs~y~A~~~A~~ 116 (204)
T 2r9g_A 96 VDLCLSPKSNSAYMALDAALA 116 (204)
T ss_dssp HHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHHHH
No 325
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=28.42 E-value=5.8e+02 Score=27.40 Aligned_cols=90 Identities=9% Similarity=-0.032 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCC---HhHHHHHHHHhhcC-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008633 237 NVVLWCLCQRLH---VGAASSLFNSMKGK-----VLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFL 308 (558)
Q Consensus 237 ~~ll~~~~~~~~---~~~A~~~~~~m~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 308 (558)
..++...|+.|. .+.|.+.|+..... ++||.. ..+...-.+.|..++-..+++.+.... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 445666777765 45677777765431 445443 233333445577666666677666542 34444567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 008633 309 IEGLGRAGRIDDAIEVFDTMKEK 331 (558)
Q Consensus 309 l~~~~~~g~~~~a~~~~~~m~~~ 331 (558)
+.+++...+.....++++.....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~ 787 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNP 787 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCT
T ss_pred HHHhCCCCCHHHHHHHHHHHhCC
Confidence 77777777777777777666543
No 326
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=28.36 E-value=2.7e+02 Score=23.43 Aligned_cols=93 Identities=15% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 008633 308 LIEGLGRA---GRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGD-----FDECMKYYKGMSSYNCEPNMDTYTRLI 379 (558)
Q Consensus 308 ll~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~~~~p~~~~~~~li 379 (558)
+|.++.|+ .+.+.|+-++.+|++.|..|.-..-..++.+.-..|. +..|...++.....|.+--.......+
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 89 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAI 89 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 008633 380 SGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~m~~ 400 (558)
.-++.+-+-..+...++...+
T Consensus 90 iyLA~aPKSNs~y~A~~~A~~ 110 (201)
T 3bge_A 90 IYLSVAPKSNAVYTAFNTAKQ 110 (201)
T ss_dssp HHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHHHH
No 327
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=28.20 E-value=57 Score=25.64 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=5.6
Q ss_pred HhCCHHHHHHHHH
Q 008633 210 RAGQVYKAIQMLG 222 (558)
Q Consensus 210 ~~g~~~~A~~~~~ 222 (558)
+.|+.+.+..+++
T Consensus 11 ~~g~~~~v~~ll~ 23 (156)
T 1bd8_A 11 ARGDVQEVRRLLH 23 (156)
T ss_dssp HHTCHHHHHHHHH
T ss_pred HhCCHHHHHHHHH
Confidence 3444444444443
No 328
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=27.94 E-value=1.5e+02 Score=20.36 Aligned_cols=60 Identities=8% Similarity=-0.026 Sum_probs=33.9
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 467 EMQESGYPSDGEIYEYVIAGLCNIG-QLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNK 527 (558)
Q Consensus 467 ~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 527 (558)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+.+.|.
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3455666655433 33444444443 445566777777666545566666666666666554
No 329
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=27.86 E-value=43 Score=28.78 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=8.5
Q ss_pred HHHHHhcCCHhHHHHHHH
Q 008633 240 LWCLCQRLHVGAASSLFN 257 (558)
Q Consensus 240 l~~~~~~~~~~~A~~~~~ 257 (558)
+...+..|+.+-+..+++
T Consensus 81 L~~A~~~~~~~~~~~Ll~ 98 (237)
T 3b7b_A 81 LHLAAKKGHYEVVQYLLS 98 (237)
T ss_dssp HHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHh
Confidence 334445555554444443
No 330
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=27.71 E-value=2.4e+02 Score=22.63 Aligned_cols=66 Identities=6% Similarity=0.064 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 008633 160 AKDVKSYNVIVKALGRR-KFFDFMCNVLSDMAKEG-VNPDLETLSIVMDSFIRAGQVYKAIQMLGRLE 225 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~-~~~~~a~~l~~~m~~~g-~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~ 225 (558)
.-+..-+..++..+... .....+..+|+.+...| -..+..-+..++.........+....+|+.+-
T Consensus 35 ~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~D 102 (183)
T 1s6c_A 35 VVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYD 102 (183)
T ss_dssp EECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 34445555555544433 23445556666664432 12344445555544444333444555555544
No 331
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=27.51 E-value=1.4e+02 Score=24.53 Aligned_cols=50 Identities=8% Similarity=-0.142 Sum_probs=23.8
Q ss_pred HHHHHHHHHHh-CCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 008633 495 NAVLVMEESLR-KGFCPSRLVY--SKLSNKLLASNKLESAYNLFRKIKIARQN 544 (558)
Q Consensus 495 ~A~~~~~~m~~-~g~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 544 (558)
.-..+++-+++ .|..++.... .+-+....+.|+.+-..-+.+.+++.+++
T Consensus 131 ~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~ 183 (186)
T 3t8k_A 131 EMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK 183 (186)
T ss_dssp HHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 33455666666 5655542110 12233345566665555555555544443
No 332
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=27.32 E-value=1.7e+02 Score=24.60 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=23.7
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 008633 205 MDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFN 257 (558)
Q Consensus 205 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~ 257 (558)
+...++.|+.+....++..-...-...+.. -.+.+...+..|+.+-+..+++
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~ 61 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQD-SRTALHWACSAGHTEIVEFLLQ 61 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTT-SCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCC-CCCHHHHHHHcCcHHHHHHHHH
Confidence 444556677776666665432110011111 1123334455566655555544
No 333
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=26.78 E-value=82 Score=26.88 Aligned_cols=17 Identities=24% Similarity=0.217 Sum_probs=7.9
Q ss_pred HHHHHhcCCHhHHHHHH
Q 008633 240 LWCLCQRLHVGAASSLF 256 (558)
Q Consensus 240 l~~~~~~~~~~~A~~~~ 256 (558)
+...+..|+.+-+..++
T Consensus 48 L~~A~~~~~~~~v~~Ll 64 (237)
T 3b7b_A 48 LMEAAENNHLEAVKYLI 64 (237)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHH
Confidence 33344455555444444
No 334
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.72 E-value=4.8e+02 Score=28.27 Aligned_cols=88 Identities=11% Similarity=-0.093 Sum_probs=46.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC-----------------
Q 008633 413 FLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPS----------------- 475 (558)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----------------- 475 (558)
++..|...|.++-|.++.. -++.++..--.+..+|...|++++|...|++.-. |+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~-----~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG-----WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG-----GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHh-----hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 4444555666555443321 1233433334566677778888888888776531 2111
Q ss_pred ------CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 476 ------DGEIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 476 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
...-|..++..+-+.+-++.++++.+.+++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1124455555555666666666666655543
No 335
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=26.64 E-value=2.1e+02 Score=22.54 Aligned_cols=33 Identities=12% Similarity=0.037 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008633 215 YKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRL 247 (558)
Q Consensus 215 ~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~ 247 (558)
-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 34 ~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp BCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344444444444443334433333344444443
No 336
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=26.22 E-value=19 Score=31.78 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=12.5
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCC
Q 008633 208 FIRAGQVYKAIQMLGRLEDFGLKFD 232 (558)
Q Consensus 208 ~~~~g~~~~A~~~~~~~~~~g~~~~ 232 (558)
.++.|+.+....+++.+.+.|..++
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 3455555555555555544443333
No 337
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=25.99 E-value=3e+02 Score=23.34 Aligned_cols=92 Identities=16% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh-----HHHHHHHHHHHcCCCCCHHHHHHHH
Q 008633 378 LISGLLKS---RKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPH-----AAMMMYKKARKVGCKLSLTAYKLLL 449 (558)
Q Consensus 378 li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~-----~a~~~~~~~~~~~~~~~~~~~~~li 449 (558)
+|+++.|+ .+.+.|+-.+.+|++.|..|....-..++-+.-..|.-+ .|...++.....|.+--.......+
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 117 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFLSQAS 117 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHcCCChhHHHHHHHHHHH
Q 008633 450 RRLSGFGKCGMLLDLWHEMQE 470 (558)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~m~~ 470 (558)
-.++..-+-..+ ..++...+
T Consensus 118 iyLA~APKSNs~-~A~~~A~~ 137 (213)
T 3ctd_A 118 LYLAISPKSNST-KSIFKAME 137 (213)
T ss_dssp HHHHHSCCCCGG-GHHHHHHH
T ss_pred HHHHcCCccHHH-HHHHHHHH
No 338
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=25.62 E-value=2.8e+02 Score=22.71 Aligned_cols=18 Identities=6% Similarity=-0.239 Sum_probs=8.0
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 008633 370 PNMDTYTRLISGLLKSRK 387 (558)
Q Consensus 370 p~~~~~~~li~~~~~~g~ 387 (558)
++..+-...+.++...|.
T Consensus 150 ~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 150 EDGWVRQSAADALGEIGG 167 (201)
T ss_dssp SSHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 344444444444444443
No 339
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=25.31 E-value=1.1e+02 Score=20.32 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc
Q 008633 340 YNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKS 385 (558)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 385 (558)
++.+++.+++..-+++++..+++..+.| ..+..+|---++.+++.
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 4555566666666666666666666665 45555555555555443
No 340
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=25.03 E-value=2.7e+02 Score=22.47 Aligned_cols=52 Identities=12% Similarity=0.046 Sum_probs=28.0
Q ss_pred hcCCHhHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 008633 489 NIGQLENAVLVMEESLRKGFCP--SRLVYSKLSN-K-----LLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~m~~ 540 (558)
+.|++-+|.+++++.-...-.+ ....|..||. . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3466666666666665543333 3444555555 1 1345666666666666543
No 341
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=24.96 E-value=2.9e+02 Score=22.73 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 512 RLVYSKLSNKLLASNKLESAYNLFRK 537 (558)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 537 (558)
...|+.+...|...|+.+||+..+..
T Consensus 114 EfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 114 EFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence 34566677777788888888887754
No 342
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=24.83 E-value=2.1e+02 Score=23.03 Aligned_cols=56 Identities=11% Similarity=-0.003 Sum_probs=25.2
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC
Q 008633 470 ESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK--GFCPSRLVYSKLSNKLLASN 526 (558)
Q Consensus 470 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g 526 (558)
+.|++.+. --..++..+...+..-.|.++++.+.+. +...+..|...-++.+...|
T Consensus 26 ~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 26 QGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 34444433 2233344444444455555555555544 33344444333444444444
No 343
>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G-PR coupled receptor, glycoprotein, membrane, receptor, transdu transmembrane; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A
Probab=24.28 E-value=82 Score=17.41 Aligned_cols=13 Identities=31% Similarity=0.629 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhcC
Q 008633 144 EAMVLFFNWAIKH 156 (558)
Q Consensus 144 ~~~~~ff~~~~~~ 156 (558)
.++..|++|++..
T Consensus 17 ~~ak~Fv~wL~~~ 29 (31)
T 3iol_B 17 QAAKEFIAWLVKG 29 (31)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcc
Confidence 7899999999864
No 344
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=24.01 E-value=81 Score=17.43 Aligned_cols=12 Identities=42% Similarity=0.839 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhc
Q 008633 144 EAMVLFFNWAIK 155 (558)
Q Consensus 144 ~~~~~ff~~~~~ 155 (558)
.++..|.+|++.
T Consensus 9 ~aakdFv~WL~n 20 (31)
T 3c5t_B 9 EAVRLFIEWLKN 20 (31)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 789999999984
No 345
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.08 E-value=1.4e+02 Score=22.76 Aligned_cols=41 Identities=10% Similarity=-0.105 Sum_probs=22.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 008633 186 LSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLED 226 (558)
Q Consensus 186 ~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~ 226 (558)
|+.+....+.|++..-..-+..+...++++.|.+++..+..
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444433333334445566777777777776664
No 346
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=22.96 E-value=3.2e+02 Score=22.50 Aligned_cols=26 Identities=12% Similarity=-0.110 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008633 479 IYEYVIAGLCNIGQLENAVLVMEESL 504 (558)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (558)
.|+.+...|.+.|+.++|+..+..--
T Consensus 116 Fy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 116 FESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 44555556667777777777766433
No 347
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=22.80 E-value=3.1e+02 Score=24.92 Aligned_cols=63 Identities=11% Similarity=0.127 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCC
Q 008633 237 NVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQ--VVEMERVLKEIVAEGFS 299 (558)
Q Consensus 237 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 299 (558)
+.++.-|...|+.++|.+.++++....--....+..+..++-+.++ .+.+.+++..+.+.|+-
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 4555666666777777777766642111122333344444444322 34455666666655544
No 348
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.51 E-value=5.7e+02 Score=25.28 Aligned_cols=123 Identities=9% Similarity=0.030 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCC-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----
Q 008633 233 AESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFN-------VMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD---- 301 (558)
Q Consensus 233 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---- 301 (558)
...+|.+++.|...+.++.|..+..+.. .|.+ ..-+-.+...+.-.+++.+|.+.+......-....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~g 308 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLG 308 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhh
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 302 --SLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKG 362 (558)
Q Consensus 302 --~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 362 (558)
...+..++-+-.-.|++.+ ...+...+.......|..|..++ +.|++++-..+++.
T Consensus 309 fr~~a~K~lI~V~LLlG~iP~----r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~ 366 (523)
T 4b4t_S 309 FLQQSNKLHCCIQLLMGDIPE----LSFFHQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITK 366 (523)
T ss_dssp HHHHHHHHHHHHHHHHTCCCC----HHHHTTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCCCC----hHHhhchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH
No 349
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=22.46 E-value=2.3e+02 Score=20.66 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH-----HhCCCCCCHHHHHHH
Q 008633 181 FMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRL-----EDFGLKFDAESLNVV 239 (558)
Q Consensus 181 ~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~-----~~~g~~~~~~~~~~l 239 (558)
.|.++.++....|+.|+..+...++..|...+- + +.++.++. -..|..|+....+.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 355666777777888888888888888877764 1 33322221 245667776655543
No 350
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=22.41 E-value=1.3e+02 Score=25.40 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=13.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC
Q 008633 380 SGLLKSRKVADALEVFEEMLDRGI 403 (558)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~m~~~~~ 403 (558)
...+..|+.+-+..+++.+.+.|.
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCC
Confidence 334455666666555566665553
No 351
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=22.23 E-value=2.2e+02 Score=26.21 Aligned_cols=19 Identities=0% Similarity=-0.078 Sum_probs=10.5
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 008633 344 ISNYISVGDFDECMKYYKG 362 (558)
Q Consensus 344 i~~~~~~g~~~~A~~~~~~ 362 (558)
+...+..|+.+-+..+++.
T Consensus 177 L~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 177 LMRAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhc
Confidence 3444566666655555554
No 352
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.07 E-value=1.3e+02 Score=23.58 Aligned_cols=47 Identities=19% Similarity=0.183 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhC
Q 008633 166 YNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAG 212 (558)
Q Consensus 166 ~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g 212 (558)
-..+++.+...+..-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34455555555556666677777766665556655555555555555
No 353
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.06 E-value=3.2e+02 Score=22.11 Aligned_cols=54 Identities=7% Similarity=0.009 Sum_probs=39.4
Q ss_pred HcCCChhHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHhcCCHhHHHHHHHHHHhC
Q 008633 453 SGFGKCGMLLDLWHEMQESGYPS--DGEIYEYVIA-G-----LCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 453 ~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~-~-----~~~~g~~~~A~~~~~~m~~~ 506 (558)
...|++-+|.++|++.=...-.+ +...|..||. . ..+.|+...|..++.+....
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34489999999998886554344 4556777777 2 23579999999999998763
No 354
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=21.25 E-value=3.7e+02 Score=22.64 Aligned_cols=107 Identities=7% Similarity=0.060 Sum_probs=46.1
Q ss_pred HHhhCCCCCCHHHHHHHHHcCCCchHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHCC-CC
Q 008633 119 ALWNVNVDLSLDVVGKVVNRGNLSGEAMVLFFNWAIK-HPNVAKDVKSYNVIVKALGRR-KFFDFMCNVLSDMAKEG-VN 195 (558)
Q Consensus 119 ~l~~~~~~~~~~~v~~~l~~~~~~~~~~~~ff~~~~~-~~~~~~~~~~~~~li~~~~~~-~~~~~a~~l~~~m~~~g-~~ 195 (558)
.+......+++..+..+....+...+....+|+.... .+.-..+..-+..++..+... .....+..+|+.+...| -.
T Consensus 26 el~~~~~~l~~~~l~~l~~~~~~s~~ei~~l~~~Fd~~d~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~f~~~D~d~~G~ 105 (224)
T 1s1e_A 26 ELEMTMVCHRPEGLEQLEAQTNFTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGS 105 (224)
T ss_dssp ------------CHHHHHHHSSCCHHHHHHHHHHHHHHCTTSCBCHHHHHHHHHTTCTTSCCHHHHHHHHHHHCTTCSSC
T ss_pred ccccCccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHhcCCCCCc
Confidence 3333334455555555555555554444444444333 133344555554444443322 23345566666665442 23
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 008633 196 PDLETLSIVMDSFIRAGQVYKAIQMLGRLE 225 (558)
Q Consensus 196 ~~~~t~~~li~~~~~~g~~~~A~~~~~~~~ 225 (558)
.+..-|..++.........++...+|+.+-
T Consensus 106 I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D 135 (224)
T 1s1e_A 106 VKFEDFVTALSILLRGTVHEKLRWTFNLYD 135 (224)
T ss_dssp BCHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred EeHHHHHHHHHHHccCCHHHHHHHHHHHHc
Confidence 455555555555544444445555555554
No 355
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=20.75 E-value=5.9e+02 Score=24.79 Aligned_cols=58 Identities=9% Similarity=0.158 Sum_probs=37.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008633 176 RKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLN 237 (558)
Q Consensus 176 ~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 237 (558)
..+.+.|.++- .+.|++.-...|..-.+.+...|++++|.++-....+ |+-.+..|.+
T Consensus 342 l~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~ 399 (494)
T 1bpo_A 342 LQNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIR 399 (494)
T ss_dssp TCCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHH
T ss_pred cCCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHH
Confidence 35666665443 4556666667777778888888888888887766553 3333554443
No 356
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=20.55 E-value=1.5e+02 Score=21.38 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 008633 514 VYSKLSNKLLASNKLESAYNLFR 536 (558)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~ 536 (558)
.+....+.+.+.|++++|++..+
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~ 39 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHR 39 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHH
Confidence 33444445555555555544433
No 357
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.21 E-value=1.4e+02 Score=23.01 Aligned_cols=45 Identities=20% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhC
Q 008633 168 VIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAG 212 (558)
Q Consensus 168 ~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g 212 (558)
.+++.+...+..-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
No 358
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=20.08 E-value=4.3e+02 Score=22.95 Aligned_cols=255 Identities=11% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----
Q 008633 242 CLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGR---- 317 (558)
Q Consensus 242 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---- 317 (558)
.+...++-.....+++.+... +...-...+.++.+.| ..++...+..+... ++...-...+.++.+.|.
T Consensus 15 ~l~~~~~~~~i~~L~~~L~~~---~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~d---~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 15 GLYNQCKKLNDDELFRLLDDH---NSLKRISSARVLQLRG-GQDAVRLAIEFCSD---KNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHHHHHHTSCHHHHHHHTTCS---SHHHHHHHHHHHHHHC-CHHHHHHHHHHHTC---SSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHHHHHHhhHHHHHHHHHcC---CHHHHHHHHHHHHccC-CchHHHHHHHHHcC---CCHHHHHHHHHHHHHhcccccc
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 318 IDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGD-----FDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADAL 392 (558)
Q Consensus 318 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 392 (558)
......++..+... .++..+-...+.++...+. ...+...+..+.. .++..+-...+.++...|+ .++.
T Consensus 88 ~~~l~~~L~~~~~~--d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~-~~~~ 161 (280)
T 1oyz_A 88 EDNVFNILNNMALN--DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVIND-KATI 161 (280)
T ss_dssp HHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC----CCH
T ss_pred chHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCC-HHHH
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHC
Q 008633 393 EVFEEMLDRGIVPSTGTITSFLEPLCSYG-PPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQES 471 (558)
Q Consensus 393 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 471 (558)
..+.++.. .++...-...+.++...| ....+...+..+.+ .++..+-...+.++.+.|.......+...+.+
T Consensus 162 ~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d- 234 (280)
T 1oyz_A 162 PLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK- 234 (280)
T ss_dssp HHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTS-
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcC-
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008633 472 GYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLA 524 (558)
Q Consensus 472 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 524 (558)
++ .-...+.++.+.|. .++...+.++.+. .++.......+..+.+
T Consensus 235 ---~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~~--~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 235 ---NT--VYDDIIEAAGELGD-KTLLPVLDTMLYK--FDDNEIITSAIDKLKR 279 (280)
T ss_dssp ---SS--CCHHHHHHHHHHCC-GGGHHHHHHHHTT--SSCCHHHHHHHHHHTC
T ss_pred ---cc--HHHHHHHHHHhcCc-hhhhHHHHHHHhc--CCCcHHHHHHHHHhhc
Done!