BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008635
(558 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FSX|A Chain A, Crystal Structure Of Rv0390 From M. Tuberculosis
Length = 148
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 49/123 (39%), Gaps = 9/123 (7%)
Query: 269 YSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVK 328
Y+GD++P E+L AVL+DVR E G+PDL R + G
Sbjct: 3 YAGDITPLQAWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWATSDGTHND 62
Query: 329 KLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQG 388
L EL D + A Q VI + G RS G A + G+ + V
Sbjct: 63 NFL---AELRDRIPA------DADQHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLD 113
Query: 389 GFQ 391
GF+
Sbjct: 114 GFE 116
>pdb|1QXN|A Chain A, Solution Structure Of The 30 Kda Polysulfide-Sulfur
Transferase Homodimer From Wolinella Succinogenes
pdb|1QXN|B Chain B, Solution Structure Of The 30 Kda Polysulfide-Sulfur
Transferase Homodimer From Wolinella Succinogenes
Length = 137
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 25/126 (19%)
Query: 273 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLR 332
LSPK +LL+ + LIDVR D + G PD++ + K + R
Sbjct: 25 LSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVK-----------------NYKHMSR 67
Query: 333 GGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQS 392
G +L+ L + + K V+V R+ ++LR+ G + +GG
Sbjct: 68 G--KLEPLLAKSGLDPEK------PVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDK 119
Query: 393 WVKEGL 398
W++EGL
Sbjct: 120 WLEEGL 125
>pdb|3GK5|A Chain A, Crystal Structure Of Rhodanese-Related Protein
(Tvg0868615) From Thermoplasma Volcanium, Northeast
Structural Genomics Consortium Target Tvr109a
Length = 108
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 350 KIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEG 397
KI++ K V+ A G RS L +LG+ + V+GG QSW++EG
Sbjct: 50 KILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVD-VEGGIQSWIEEG 96
>pdb|1GMX|A Chain A, Escherichia Coli Glpe Sulfurtransferase
Length = 108
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 356 SKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKE 396
+ V+VM G SKG A+ L + G V + + GGF++W ++
Sbjct: 59 TPVMVMXYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ 99
>pdb|1GN0|A Chain A, Escherichia Coli Glpe Sulfurtransferase Soaked With Kcn
Length = 108
Score = 33.9 bits (76), Expect = 0.24, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 356 SKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKE 396
+ V+VM G SKG A+ L + G V + + GGF++W ++
Sbjct: 59 TPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ 99
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mn-Amppnp And N-Acetyl Glactosamine
pdb|2A2C|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mg-Adp And N-Acetyl Galactosamine 1-
Phosphate
Length = 478
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 31 MTENADKLMAPVEPKTTLAIELTPENPTTTFDSLDMDNSSISNIKSSFDDF----LAGVN 86
M D L+A VEP T A++L NP S +N I K + ++ L G+
Sbjct: 81 MAVEQDVLIA-VEPVKTYALQLANTNPLYPDFSTSANNIQIDKTKPLWHNYFLCGLKGIQ 139
Query: 87 ESFSSSMIKGENAV 100
E F S + G N +
Sbjct: 140 EHFGLSNLTGMNCL 153
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 291 IDVRHEDLRERDGIPDLR---RGARFRYASVYLPEVGGSVKKLLR 332
+ + H + R + PD+R +G RF + V LPE+ V+KLLR
Sbjct: 180 LGIEHIEYRSENS-PDVRPYVKGIRFEWVRVDLPEIYKEVRKLLR 223
>pdb|3RKO|N Chain N, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From E. Coli At 3.0 Angstrom Resolution
pdb|3RKO|D Chain D, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From E. Coli At 3.0 Angstrom Resolution
Length = 485
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 15/121 (12%)
Query: 149 TDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESL-----------PP 197
T++K ++++ + L ++AL+ + + VY G SL P
Sbjct: 292 TNIKRLLGYSSISHLGYLLVALIALQTGEMSMEAVGVYLAGYLFSSLGAFGVVSLMSSPY 351
Query: 198 EIRDALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSATL 257
DA +L+ R + RP+ +A+ + +++ G+ +LGF +V+ +G A L
Sbjct: 352 RGPDADSLFSYRGLFWHRPILAAVMTVMMLSLAGIPMTLGFIGKF----YVLAVGVQAHL 407
Query: 258 W 258
W
Sbjct: 408 W 408
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 22/134 (16%)
Query: 283 RGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLT 342
+G A+L + +D ERDG+ L + + + G VK + + L DTL
Sbjct: 115 KGFTTAILTNTWLDDRAERDGLAQLMCELKMHFDFLIESCQVGMVKPEPQIYKFLLDTLK 174
Query: 343 AAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKE 402
A+ S+V+ +D G K R LG MVT LVQ + +KE
Sbjct: 175 AS----------PSEVVFLDDIGANLK----PARDLG-MVTILVQDTDTA-------LKE 212
Query: 403 LKSETALTILNEDA 416
L+ T + +LN A
Sbjct: 213 LEKVTGIQLLNTPA 226
>pdb|3LW9|A Chain A, Structure Of A Cytoplasmic Domain Of Salmonella Inva
pdb|3LW9|B Chain B, Structure Of A Cytoplasmic Domain Of Salmonella Inva
Length = 168
Score = 29.3 bits (64), Expect = 5.7, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 15/112 (13%)
Query: 294 RHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQ 353
R EDL E+ + + R F V LPEV LLR G LDD +I +++ Q
Sbjct: 13 RREDL-EKAQLAERXRSQFFIDYGVRLPEV------LLRDGEGLDDNSIVLLINEIRVEQ 65
Query: 354 DRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQS-WV--KEGLRIKE 402
+ D R + + G+ T QG Q WV +EG +++E
Sbjct: 66 -----FTVYFDLXRVVNYSDEVVSFGINPTIHQQGSSQYFWVTHEEGEKLRE 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,475,714
Number of Sequences: 62578
Number of extensions: 625081
Number of successful extensions: 1927
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1919
Number of HSP's gapped (non-prelim): 20
length of query: 558
length of database: 14,973,337
effective HSP length: 104
effective length of query: 454
effective length of database: 8,465,225
effective search space: 3843212150
effective search space used: 3843212150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)