BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008635
(558 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FN48|CAS_ARATH Calcium sensing receptor, chloroplastic OS=Arabidopsis thaliana
GN=CAS PE=1 SV=1
Length = 387
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 94/189 (49%), Gaps = 14/189 (7%)
Query: 223 QQVSVAIEGLE--RSLGFDPNDPIVPFVVFLGTSATLWIFYWW--------WTYGGYSGD 272
QQ S AIE + S D P V+ + A + + + GY GD
Sbjct: 161 QQTSKAIEDAKPIASSTMDTISSADPSVIVVAAGAAFLAYLLLPPVFSAISFNFRGYKGD 220
Query: 273 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLR 332
L+P TL+LL K N +++D+R E +E+ GIP L A+ R S+ L E+ VK ++R
Sbjct: 221 LTPAQTLDLLCTK-NYLMVDIRSEKDKEKAGIPRLPSNAKNRVISIPLEELPNKVKGIVR 279
Query: 333 GGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGF-- 390
+ ++ + A I LK + S +I++D+ +K +A++L+ LG ++V GF
Sbjct: 280 NSKRVEAEIAALKISYLKKINKGSNIIILDSYTDSAKIVAKTLKVLGYKNCYIVTDGFSG 339
Query: 391 -QSWVKEGL 398
+ W++ L
Sbjct: 340 GRGWLQSRL 348
>sp|Q9CL12|GLPE_PASMU Thiosulfate sulfurtransferase GlpE OS=Pasteurella multocida (strain
Pm70) GN=glpE PE=3 SV=1
Length = 107
Score = 36.6 bits (83), Expect = 0.52, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 353 QDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKEL 403
+D VIV+ G S+G A L + G + V GGF++W ++GL I+ +
Sbjct: 56 EDDHPVIVICYHGVSSRGAAMYLIEQGYTQVYSVTGGFEAWERDGLPIERI 106
>sp|Q7VNZ0|GLPE_HAEDU Thiosulfate sulfurtransferase GlpE OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=glpE PE=3 SV=1
Length = 110
Score = 35.8 bits (81), Expect = 0.94, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 349 LKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKE 402
L +V D VIV+ G S+ +A+ L + G + V GGF++W K L + +
Sbjct: 53 LDLVSDEQAVIVVCYHGISSRSVAQFLVEQGFETVYSVTGGFEAWQKLALPVTK 106
>sp|Q2NQH2|GLPE_SODGM Thiosulfate sulfurtransferase GlpE OS=Sodalis glossinidius (strain
morsitans) GN=glpE PE=3 SV=1
Length = 107
Score = 35.8 bits (81), Expect = 1.0, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 331 LRGGREL-DDTLTAAVIRNLKIVQDRSK-VIVMDADGTRSKGIARSLRKLGVMVTFLVQG 388
LRG L +DTL A + ++ D ++ V+V+ G SKG A+ L GV V + V G
Sbjct: 37 LRGAFHLTNDTLPAFLAQH-----DLARPVMVLCYHGNSSKGAAQYLLTQGVEVAYSVDG 91
Query: 389 GFQSWVK 395
GF +W+K
Sbjct: 92 GFDAWLK 98
>sp|Q1RDR9|PYRD_ECOUT Dihydroorotate dehydrogenase (quinone) OS=Escherichia coli (strain
UTI89 / UPEC) GN=pyrD PE=3 SV=2
Length = 336
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 15/107 (14%)
Query: 100 VKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNFSTDL-----KEA 154
V+ ++D + ++ T++ +S + + N DQTGG +G L ST++ +E
Sbjct: 235 VRHNIDGVIATNTTLDRSLVQGMKNC--------DQTGGLSGRPLQLKSTEIIRRLSQEL 286
Query: 155 SSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRD 201
+ + + V + ++++A E + GAS V Y G + PP I++
Sbjct: 287 NGRLPIIGVGGI-DSVIAAREKIAAGASLVQIYSGFIFKG-PPLIKE 331
>sp|Q8FJ91|PYRD_ECOL6 Dihydroorotate dehydrogenase (quinone) OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=pyrD PE=3 SV=2
Length = 336
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 15/107 (14%)
Query: 100 VKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNFSTDL-----KEA 154
V+ ++D + ++ T++ +S + + N DQTGG +G L ST++ +E
Sbjct: 235 VRHNIDGVIATNTTLDRSLVQGMKNC--------DQTGGLSGRPLQLKSTEIIRRLSQEL 286
Query: 155 SSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRD 201
+ + + V + ++++A E + GAS V Y G + PP I++
Sbjct: 287 NGRLPIIGVGGI-DSVIAAREKIAAGASLVQIYSGFIFKG-PPLIKE 331
>sp|Q0TJB6|PYRD_ECOL5 Dihydroorotate dehydrogenase (quinone) OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=pyrD PE=3 SV=1
Length = 336
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 15/107 (14%)
Query: 100 VKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNFSTDL-----KEA 154
V+ ++D + ++ T++ +S + + N DQTGG +G L ST++ +E
Sbjct: 235 VRHNIDGVIATNTTLDRSLVQGMKNC--------DQTGGLSGRPLQLKSTEIIRRLSQEL 286
Query: 155 SSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRD 201
+ + + V + ++++A E + GAS V Y G + PP I++
Sbjct: 287 NGRLPIIGVGGI-DSVIAAREKIAAGASLVQIYSGFIFKG-PPLIKE 331
>sp|A1A9L5|PYRD_ECOK1 Dihydroorotate dehydrogenase (quinone) OS=Escherichia coli O1:K1 /
APEC GN=pyrD PE=3 SV=1
Length = 336
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 15/107 (14%)
Query: 100 VKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNFSTDL-----KEA 154
V+ ++D + ++ T++ +S + + N DQTGG +G L ST++ +E
Sbjct: 235 VRHNIDGVIATNTTLDRSLVQGMKNC--------DQTGGLSGRPLQLKSTEIIRRLSQEL 286
Query: 155 SSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRD 201
+ + + V + ++++A E + GAS V Y G + PP I++
Sbjct: 287 NGRLPIIGVGGI-DSVIAAREKIAAGASLVQIYSGFIFKG-PPLIKE 331
>sp|B7MS56|PYRD_ECO81 Dihydroorotate dehydrogenase (quinone) OS=Escherichia coli O81
(strain ED1a) GN=pyrD PE=3 SV=1
Length = 336
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 15/107 (14%)
Query: 100 VKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNFSTDL-----KEA 154
V+ ++D + ++ T++ +S + + N DQTGG +G L ST++ +E
Sbjct: 235 VRHNIDGVIATNTTLDRSLVQGMKNC--------DQTGGLSGRPLQLKSTEIIRRLSQEL 286
Query: 155 SSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRD 201
+ + + V + ++++A E + GAS V Y G + PP I++
Sbjct: 287 NGRLPIIGVGGI-DSVIAAREKIAAGASLVQIYSGFIFKG-PPLIKE 331
>sp|B7MHP7|PYRD_ECO45 Dihydroorotate dehydrogenase (quinone) OS=Escherichia coli O45:K1
(strain S88 / ExPEC) GN=pyrD PE=3 SV=1
Length = 336
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 15/107 (14%)
Query: 100 VKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNFSTDL-----KEA 154
V+ ++D + ++ T++ +S + + N DQTGG +G L ST++ +E
Sbjct: 235 VRHNIDGVIATNTTLDRSLVQGMKNC--------DQTGGLSGRPLQLKSTEIIRRLSQEL 286
Query: 155 SSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRD 201
+ + + V + ++++A E + GAS V Y G + PP I++
Sbjct: 287 NGRLPIIGVGGI-DSVIAAREKIAAGASLVQIYSGFIFKG-PPLIKE 331
>sp|B7UN24|PYRD_ECO27 Dihydroorotate dehydrogenase (quinone) OS=Escherichia coli O127:H6
(strain E2348/69 / EPEC) GN=pyrD PE=3 SV=1
Length = 336
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 15/107 (14%)
Query: 100 VKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNFSTDL-----KEA 154
V+ ++D + ++ T++ +S + + N DQTGG +G L ST++ +E
Sbjct: 235 VRHNIDGVIATNTTLDRSLVQGMKNC--------DQTGGLSGRPLQLKSTEIIRRLSQEL 286
Query: 155 SSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRD 201
+ + + V + ++++A E + GAS V Y G + PP I++
Sbjct: 287 NGRLPIIGVGGI-DSVIAAREKIAAGASLVQIYSGFIFKG-PPLIKE 331
>sp|B1LJR7|PYRD_ECOSM Dihydroorotate dehydrogenase (quinone) OS=Escherichia coli (strain
SMS-3-5 / SECEC) GN=pyrD PE=3 SV=1
Length = 336
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 15/107 (14%)
Query: 100 VKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNFSTDL-----KEA 154
V+ ++D + ++ T++ +S + + N DQTGG +G L ST++ +E
Sbjct: 235 VRHNIDGVIATNTTLDRSLVQGMKNC--------DQTGGLSGRPLQLKSTEIIRRLSQEL 286
Query: 155 SSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRD 201
+ + + V + ++++A E + GAS V Y G + PP I++
Sbjct: 287 NGRLPIIGVGGI-DSVIAAREKIAAGASLVQIYSGFIFKG-PPLIKE 331
>sp|B7N3A7|PYRD_ECOLU Dihydroorotate dehydrogenase (quinone) OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=pyrD PE=3 SV=1
Length = 336
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 15/107 (14%)
Query: 100 VKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNFSTDL-----KEA 154
V+ ++D + ++ T++ +S + + N DQTGG +G L ST++ +E
Sbjct: 235 VRHNIDGVIATNTTLDRSLVQGMKNC--------DQTGGLSGRPLQLKSTEIIRRLSQEL 286
Query: 155 SSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRD 201
+ + + V + ++++A E + GAS V Y G + PP I++
Sbjct: 287 NGRLPIIGVGGI-DSVIAAREKIAAGASLVQIYSGFIFKG-PPLIKE 331
>sp|B7NM29|PYRD_ECO7I Dihydroorotate dehydrogenase (quinone) OS=Escherichia coli O7:K1
(strain IAI39 / ExPEC) GN=pyrD PE=3 SV=1
Length = 336
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 15/107 (14%)
Query: 100 VKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNFSTDL-----KEA 154
V+ ++D + ++ T++ +S + + N DQTGG +G L ST++ +E
Sbjct: 235 VRHNIDGVIATNTTLDRSLVQGMKNC--------DQTGGLSGRPLQLKSTEIIRRLSQEL 286
Query: 155 SSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRD 201
+ + + V + ++++A E + GAS V Y G + PP I++
Sbjct: 287 NGRLPIIGVGGI-DSVIAAREKIAAGASLVQIYSGFIFKG-PPLIKE 331
>sp|A8GH04|NUON_SERP5 NADH-quinone oxidoreductase subunit N OS=Serratia proteamaculans
(strain 568) GN=nuoN PE=3 SV=1
Length = 485
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 16/152 (10%)
Query: 119 SEAVDNVVSRVFSSIDQTGGSAGSKLTNFS-TDLKEASSKATVAAVDVLRNTIVALEESM 177
+ A DN R+ SI L S T++K +++A + L ++A++
Sbjct: 261 APAADNEALRMVLSIIAVCSILFGNLMAISQTNIKRLLGYSSIAHLGYLLVALIAVQTHQ 320
Query: 178 TNGASFVVYYYGTTKESL-----------PPEIRDALNLYEDRAVKLWRPVGSALQQQVS 226
+ + VY G SL P DA +L+ R + +P+ SA+ +
Sbjct: 321 LSLETAGVYLAGYLFSSLGAFGVVSLMSSPYRGPDADSLFSYRGLFWHKPILSAVMTVMM 380
Query: 227 VAIEGLERSLGFDPNDPIVPFVVFLGTSATLW 258
+++ G+ +LGF FV+ +G SA LW
Sbjct: 381 LSLAGIPMTLGFIGKF----FVIAMGVSAHLW 408
>sp|Q31XS9|MLTF_SHIBS Membrane-bound lytic murein transglycosylase F OS=Shigella boydii
serotype 4 (strain Sb227) GN=mltF PE=3 SV=2
Length = 518
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 16/85 (18%)
Query: 5 GSGELKYIEDSSVPAVEEGLVDF--ADRMTENADKLMAPVEPKTTLAIELTPENPTTTFD 62
GS EL +ED V EG +D+ AD + A L V P+ +A+++T E P T F
Sbjct: 184 GSAEL--MED-----VIEGKLDYTIADSV---AISLFQRVHPELAVALDITDEQPVTWFS 233
Query: 63 SLDMDNSSISNIKSSFDDFLAGVNE 87
LD DN+ + ++ DF +NE
Sbjct: 234 PLDGDNT----LSAALLDFFNEMNE 254
>sp|B2TXX1|MLTF_SHIB3 Membrane-bound lytic murein transglycosylase F OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=mltF PE=3
SV=1
Length = 518
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 16/85 (18%)
Query: 5 GSGELKYIEDSSVPAVEEGLVDF--ADRMTENADKLMAPVEPKTTLAIELTPENPTTTFD 62
GS EL +ED V EG +D+ AD + A L V P+ +A+++T E P T F
Sbjct: 184 GSAEL--MED-----VIEGKLDYTIADSV---AISLFQRVHPELAVALDITDEQPVTWFS 233
Query: 63 SLDMDNSSISNIKSSFDDFLAGVNE 87
LD DN+ + ++ DF +NE
Sbjct: 234 PLDGDNT----LSAALLDFFNEMNE 254
>sp|Q8Z4L5|MLTF_SALTI Membrane-bound lytic murein transglycosylase F OS=Salmonella typhi
GN=mltF PE=3 SV=1
Length = 475
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 38 LMAPVEPKTTLAIELTPENPTTTFDSLDMDNSSISNIKSSFDDFLAGVNESFSSSMIK 95
L V P+ +A+++T E P T F LD DN+ + ++ DF +NE S + I+
Sbjct: 209 LFQRVHPELAVALDVTDEQPVTWFSRLDDDNT----LSAALLDFFNSINEDGSLARIE 262
>sp|P0AGC6|MLTF_SHIFL Membrane-bound lytic murein transglycosylase F OS=Shigella flexneri
GN=mltF PE=3 SV=2
Length = 518
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 16/85 (18%)
Query: 5 GSGELKYIEDSSVPAVEEGLVDF--ADRMTENADKLMAPVEPKTTLAIELTPENPTTTFD 62
GS EL +ED V EG +D+ AD + A L V P+ +A+++T E P T F
Sbjct: 184 GSAEL--MED-----VIEGKLDYTIADSV---AISLFQRVHPELAVALDITDEQPVTWFS 233
Query: 63 SLDMDNSSISNIKSSFDDFLAGVNE 87
LD DN+ + ++ DF +NE
Sbjct: 234 PLDGDNT----LSAALLDFFNEMNE 254
>sp|P0AGC5|MLTF_ECOLI Membrane-bound lytic murein transglycosylase F OS=Escherichia coli
(strain K12) GN=mltF PE=1 SV=2
Length = 518
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 16/85 (18%)
Query: 5 GSGELKYIEDSSVPAVEEGLVDF--ADRMTENADKLMAPVEPKTTLAIELTPENPTTTFD 62
GS EL +ED V EG +D+ AD + A L V P+ +A+++T E P T F
Sbjct: 184 GSAEL--MED-----VIEGKLDYTIADSV---AISLFQRVHPELAVALDITDEQPVTWFS 233
Query: 63 SLDMDNSSISNIKSSFDDFLAGVNE 87
LD DN+ + ++ DF +NE
Sbjct: 234 PLDGDNT----LSAALLDFFNEMNE 254
>sp|B1IVR9|MLTF_ECOLC Membrane-bound lytic murein transglycosylase F OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=mltF PE=3 SV=1
Length = 518
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 16/85 (18%)
Query: 5 GSGELKYIEDSSVPAVEEGLVDF--ADRMTENADKLMAPVEPKTTLAIELTPENPTTTFD 62
GS EL +ED V EG +D+ AD + A L V P+ +A+++T E P T F
Sbjct: 184 GSAEL--MED-----VIEGKLDYTIADSV---AISLFQRVHPELAVALDITDEQPVTWFS 233
Query: 63 SLDMDNSSISNIKSSFDDFLAGVNE 87
LD DN+ + ++ DF +NE
Sbjct: 234 PLDGDNT----LSAALLDFFNEMNE 254
>sp|A8A366|MLTF_ECOHS Membrane-bound lytic murein transglycosylase F OS=Escherichia coli
O9:H4 (strain HS) GN=mltF PE=3 SV=1
Length = 518
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 16/85 (18%)
Query: 5 GSGELKYIEDSSVPAVEEGLVDF--ADRMTENADKLMAPVEPKTTLAIELTPENPTTTFD 62
GS EL +ED V EG +D+ AD + A L V P+ +A+++T E P T F
Sbjct: 184 GSAEL--MED-----VIEGKLDYTIADSV---AISLFQRVHPELAVALDITDEQPVTWFS 233
Query: 63 SLDMDNSSISNIKSSFDDFLAGVNE 87
LD DN+ + ++ DF +NE
Sbjct: 234 PLDGDNT----LSAALLDFFNEMNE 254
>sp|B1XB33|MLTF_ECODH Membrane-bound lytic murein transglycosylase F OS=Escherichia coli
(strain K12 / DH10B) GN=mltF PE=3 SV=2
Length = 518
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 16/85 (18%)
Query: 5 GSGELKYIEDSSVPAVEEGLVDF--ADRMTENADKLMAPVEPKTTLAIELTPENPTTTFD 62
GS EL +ED V EG +D+ AD + A L V P+ +A+++T E P T F
Sbjct: 184 GSAEL--MED-----VIEGKLDYTIADSV---AISLFQRVHPELAVALDITDEQPVTWFS 233
Query: 63 SLDMDNSSISNIKSSFDDFLAGVNE 87
LD DN+ + ++ DF +NE
Sbjct: 234 PLDGDNT----LSAALLDFFNEMNE 254
>sp|B3Y154|MLTF_ECO11 Membrane-bound lytic murein transglycosylase F OS=Escherichia coli
O111:H- GN=mltF PE=3 SV=1
Length = 518
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 16/85 (18%)
Query: 5 GSGELKYIEDSSVPAVEEGLVDF--ADRMTENADKLMAPVEPKTTLAIELTPENPTTTFD 62
GS EL +ED V EG +D+ AD + A L V P+ +A+++T E P T F
Sbjct: 184 GSAEL--MED-----VIEGKLDYTIADSV---AISLFQRVHPELAVALDITDEQPVTWFS 233
Query: 63 SLDMDNSSISNIKSSFDDFLAGVNE 87
LD DN+ + ++ DF +NE
Sbjct: 234 PLDGDNT----LSAALLDFFNEMNE 254
>sp|Q0T1W2|MLTF_SHIF8 Membrane-bound lytic murein transglycosylase F OS=Shigella flexneri
serotype 5b (strain 8401) GN=mltF PE=3 SV=2
Length = 518
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 16/85 (18%)
Query: 5 GSGELKYIEDSSVPAVEEGLVDF--ADRMTENADKLMAPVEPKTTLAIELTPENPTTTFD 62
GS EL +ED V EG +D+ AD + A L V P+ +A+++T E P T F
Sbjct: 184 GSAEL--MED-----VIEGKLDYTIADSV---AISLFQRVHPELAVALDITDEQPVTWFS 233
Query: 63 SLDMDNSSISNIKSSFDDFLAGVNE 87
LD DN+ + ++ DF +NE
Sbjct: 234 PLDGDNT----LSAALLDFFNEMNE 254
>sp|Q3YYZ7|MLTF_SHISS Membrane-bound lytic murein transglycosylase F OS=Shigella sonnei
(strain Ss046) GN=mltF PE=3 SV=2
Length = 518
Score = 34.3 bits (77), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 16/85 (18%)
Query: 5 GSGELKYIEDSSVPAVEEGLVDF--ADRMTENADKLMAPVEPKTTLAIELTPENPTTTFD 62
GS EL +ED V EG +D+ AD + A L V P+ +A+++T E P T F
Sbjct: 184 GSAEL--MED-----VIEGKLDYTIADSV---AISLFQRVHPELAVALDITDEQPVTWFS 233
Query: 63 SLDMDNSSISNIKSSFDDFLAGVNE 87
LD DN+ + ++ DF +NE
Sbjct: 234 PLDGDNT----LSAALLDFFNEMNE 254
>sp|B1LP71|MLTF_ECOSM Membrane-bound lytic murein transglycosylase F OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=mltF PE=3 SV=1
Length = 518
Score = 34.3 bits (77), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 16/85 (18%)
Query: 5 GSGELKYIEDSSVPAVEEGLVDF--ADRMTENADKLMAPVEPKTTLAIELTPENPTTTFD 62
GS EL +ED V EG +D+ AD + A L V P+ +A+++T E P T F
Sbjct: 184 GSAEL--MED-----VIEGKLDYTIADSV---AISLFQRVHPELAVALDITDEQPVTWFS 233
Query: 63 SLDMDNSSISNIKSSFDDFLAGVNE 87
LD DN+ + ++ DF +NE
Sbjct: 234 PLDGDNT----LSAALLDFFNEMNE 254
>sp|Q8XA45|MLTF_ECO57 Membrane-bound lytic murein transglycosylase F OS=Escherichia coli
O157:H7 GN=mltF PE=3 SV=2
Length = 518
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 16/85 (18%)
Query: 5 GSGELKYIEDSSVPAVEEGLVDF--ADRMTENADKLMAPVEPKTTLAIELTPENPTTTFD 62
GS EL +ED V EG +D+ AD + A L V P+ +A+++T E P T F
Sbjct: 184 GSAEL--MED-----VIEGKLDYTIADSV---AISLFQRVHPELAVALDITDEQPVTWFS 233
Query: 63 SLDMDNSSISNIKSSFDDFLAGVNE 87
LD DN+ + ++ DF +NE
Sbjct: 234 PLDGDNT----LSAALLDFFNEMNE 254
>sp|Q1R8H6|MLTF_ECOUT Membrane-bound lytic murein transglycosylase F OS=Escherichia coli
(strain UTI89 / UPEC) GN=mltF PE=3 SV=1
Length = 518
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 16/85 (18%)
Query: 5 GSGELKYIEDSSVPAVEEGLVDF--ADRMTENADKLMAPVEPKTTLAIELTPENPTTTFD 62
GS EL +ED V EG +D+ AD + A L V P+ +A+++T E P T F
Sbjct: 184 GSAEL--MED-----VIEGKLDYTIADSV---AISLFQRVHPELAVALDITDEQPVTWFS 233
Query: 63 SLDMDNSSISNIKSSFDDFLAGVNE 87
LD DN+ + ++ DF +NE
Sbjct: 234 PLDGDNT----LSAALLDFFNEMNE 254
>sp|Q0TET0|MLTF_ECOL5 Membrane-bound lytic murein transglycosylase F OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=mltF PE=3 SV=1
Length = 518
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 16/85 (18%)
Query: 5 GSGELKYIEDSSVPAVEEGLVDF--ADRMTENADKLMAPVEPKTTLAIELTPENPTTTFD 62
GS EL +ED V EG +D+ AD + A L V P+ +A+++T E P T F
Sbjct: 184 GSAEL--MED-----VIEGKLDYTIADSV---AISLFQRVHPELAVALDITDEQPVTWFS 233
Query: 63 SLDMDNSSISNIKSSFDDFLAGVNE 87
LD DN+ + ++ DF +NE
Sbjct: 234 PLDGDNT----LSAALLDFFNEMNE 254
>sp|A1AE89|MLTF_ECOK1 Membrane-bound lytic murein transglycosylase F OS=Escherichia coli
O1:K1 / APEC GN=mltF PE=3 SV=2
Length = 518
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 16/85 (18%)
Query: 5 GSGELKYIEDSSVPAVEEGLVDF--ADRMTENADKLMAPVEPKTTLAIELTPENPTTTFD 62
GS EL +ED V EG +D+ AD + A L V P+ +A+++T E P T F
Sbjct: 184 GSAEL--MED-----VIEGKLDYTIADSV---AISLFQRVHPELAVALDITDEQPVTWFS 233
Query: 63 SLDMDNSSISNIKSSFDDFLAGVNE 87
LD DN+ + ++ DF +NE
Sbjct: 234 PLDGDNT----LSAALLDFFNEMNE 254
>sp|A7ZQ01|MLTF_ECO24 Membrane-bound lytic murein transglycosylase F OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=mltF PE=3 SV=2
Length = 518
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 16/85 (18%)
Query: 5 GSGELKYIEDSSVPAVEEGLVDF--ADRMTENADKLMAPVEPKTTLAIELTPENPTTTFD 62
GS EL +ED V EG +D+ AD + A L V P+ +A+++T E P T F
Sbjct: 184 GSAEL--MED-----VIEGKLDYTIADSV---AISLFQRVHPELAVALDITDEQPVTWFS 233
Query: 63 SLDMDNSSISNIKSSFDDFLAGVNE 87
LD DN+ + ++ DF +NE
Sbjct: 234 PLDGDNT----LSAALLDFFNEMNE 254
>sp|B7LNV5|PYRD_ESCF3 Dihydroorotate dehydrogenase (quinone) OS=Escherichia fergusonii
(strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=pyrD
PE=3 SV=1
Length = 336
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 56/110 (50%), Gaps = 15/110 (13%)
Query: 97 ENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNFSTDL----- 151
++ V+ ++D + ++ T++ +S + + N DQTGG +G L ST++
Sbjct: 232 DSLVRHNIDGVIATNTTLDRSLVQGMKNC--------DQTGGLSGRPLQLKSTEIIRRLS 283
Query: 152 KEASSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRD 201
+E + + + V + ++++A E + GA+ V Y G + PP I++
Sbjct: 284 QELNGRLPIIGVGGI-DSVIAAREKIAAGATLVQIYSGFIFKG-PPLIKE 331
>sp|P0AG27|YIBN_ECOLI Uncharacterized protein YibN OS=Escherichia coli (strain K12)
GN=yibN PE=1 SV=1
Length = 143
Score = 34.3 bits (77), Expect = 2.8, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 27/117 (23%)
Query: 282 LRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTL 341
L KE+AV++D+R D D R+G + GS+ L +
Sbjct: 48 LINKEDAVVVDLRQRD--------DFRKG-----------HIAGSINLL-------PSEI 81
Query: 342 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGL 398
A + L+ +D+ VIV+D G + + A +L K G F+++ G W E L
Sbjct: 82 KANNVGELEKHKDKP-VIVVDGSGMQCQEPANALTKAGFAQVFVLKEGVAGWAGENL 137
>sp|P0AG28|YIBN_ECOL6 Uncharacterized protein YibN OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=yibN PE=3 SV=1
Length = 143
Score = 34.3 bits (77), Expect = 2.8, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 27/117 (23%)
Query: 282 LRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTL 341
L KE+AV++D+R D D R+G + GS+ L +
Sbjct: 48 LINKEDAVVVDLRQRD--------DFRKG-----------HIAGSINLL-------PSEI 81
Query: 342 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGL 398
A + L+ +D+ VIV+D G + + A +L K G F+++ G W E L
Sbjct: 82 KANNVGELEKHKDKP-VIVVDGSGMQCQEPANALTKAGFAQVFVLKEGVAGWAGENL 137
>sp|P0AG29|YIBN_ECO57 Uncharacterized protein YibN OS=Escherichia coli O157:H7 GN=yibN
PE=3 SV=1
Length = 143
Score = 34.3 bits (77), Expect = 2.8, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 27/117 (23%)
Query: 282 LRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTL 341
L KE+AV++D+R D D R+G + GS+ L +
Sbjct: 48 LINKEDAVVVDLRQRD--------DFRKG-----------HIAGSINLL-------PSEI 81
Query: 342 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGL 398
A + L+ +D+ VIV+D G + + A +L K G F+++ G W E L
Sbjct: 82 KANNVGELEKHKDKP-VIVVDGSGMQCQEPANALTKAGFAQVFVLKEGVAGWAGENL 137
>sp|A1JLL1|NUON_YERE8 NADH-quinone oxidoreductase subunit N OS=Yersinia enterocolitica
serotype O:8 / biotype 1B (strain 8081) GN=nuoN PE=3
SV=1
Length = 485
Score = 34.3 bits (77), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 15/121 (12%)
Query: 149 TDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESL-----------PP 197
T++K +++A + L +VA++ + VY G SL P
Sbjct: 292 TNIKRLLGYSSIAHLGYLLIALVAVQTHQLALETAGVYLAGYLFSSLGAFGVVSLMSSPY 351
Query: 198 EIRDALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSATL 257
+ DA +L+ R + +P+ SA+ + +++ G+ +LGF FVV +G SA L
Sbjct: 352 KGPDAESLFSYRGLFWHKPILSAVMTVMMLSLAGIPMTLGFIGKF----FVVAMGVSANL 407
Query: 258 W 258
W
Sbjct: 408 W 408
>sp|A9MGY7|MLTF_SALAR Membrane-bound lytic murein transglycosylase F OS=Salmonella
arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
GN=mltF PE=3 SV=1
Length = 514
Score = 34.3 bits (77), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 38 LMAPVEPKTTLAIELTPENPTTTFDSLDMDNSSISNIKSSFDDFLAGVNESFSSSMIK 95
L V P+ +A+++T E P T F LD DN+ + ++ DF +NE S + I+
Sbjct: 209 LFQRVHPELAVALDVTDEQPVTWFSRLDDDNT----LSAALLDFFNSINEDGSLARIE 262
>sp|Q32D14|MLTF_SHIDS Membrane-bound lytic murein transglycosylase F OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=mltF PE=3 SV=2
Length = 518
Score = 33.9 bits (76), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 16/85 (18%)
Query: 5 GSGELKYIEDSSVPAVEEGLVDF--ADRMTENADKLMAPVEPKTTLAIELTPENPTTTFD 62
GS EL +ED V EG +D+ AD + A L V P+ +A+++T E P T F
Sbjct: 184 GSAEL--MED-----VIEGKLDYTIADSV---AISLFQRVHPELAVALDITDEQPVTWFR 233
Query: 63 SLDMDNSSISNIKSSFDDFLAGVNE 87
LD DN+ + ++ DF +NE
Sbjct: 234 PLDGDNT----LSAALLDFFNEMNE 254
>sp|Q57LE4|MLTF_SALCH Membrane-bound lytic murein transglycosylase F OS=Salmonella
choleraesuis (strain SC-B67) GN=mltF PE=3 SV=1
Length = 514
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 38 LMAPVEPKTTLAIELTPENPTTTFDSLDMDNSSISNIKSSFDDFLAGVNESFSSSMIK 95
L V P+ +A+++T E P T F LD DN+ + ++ DF +NE S + I+
Sbjct: 209 LFQRVHPELAVALDVTDEQPVTWFSRLDDDNT----LSAALLDFFNSINEDGSLARIE 262
>sp|Q8ZN28|MLTF_SALTY Membrane-bound lytic murein transglycosylase F OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=mltF PE=3 SV=1
Length = 514
Score = 33.9 bits (76), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 38 LMAPVEPKTTLAIELTPENPTTTFDSLDMDNSSISNIKSSFDDFLAGVNESFSSSMIK 95
L V P+ +A+++T E P T F LD DN+ + ++ DF +NE S + I+
Sbjct: 209 LFQRVHPELAVALDVTDEQPVTWFSRLDDDNT----LSAALLDFFNSINEDGSLARIE 262
>sp|A9N1U5|MLTF_SALPB Membrane-bound lytic murein transglycosylase F OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=mltF PE=3
SV=1
Length = 514
Score = 33.9 bits (76), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 38 LMAPVEPKTTLAIELTPENPTTTFDSLDMDNSSISNIKSSFDDFLAGVNESFSSSMIK 95
L V P+ +A+++T E P T F LD DN+ + ++ DF +NE S + I+
Sbjct: 209 LFQRVHPELAVALDVTDEQPVTWFSRLDDDNT----LSAALLDFFNSINEDGSLARIE 262
>sp|Q3YWA3|GLPE_SHISS Thiosulfate sulfurtransferase GlpE OS=Shigella sonnei (strain
Ss046) GN=glpE PE=3 SV=1
Length = 108
Score = 33.9 bits (76), Expect = 3.5, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 356 SKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKE 396
+ V+VM G SKG A+ L + G V + + GGF++W ++
Sbjct: 59 TPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ 99
>sp|P0A6V7|GLPE_SHIFL Thiosulfate sulfurtransferase GlpE OS=Shigella flexneri GN=glpE
PE=3 SV=1
Length = 108
Score = 33.9 bits (76), Expect = 3.5, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 356 SKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKE 396
+ V+VM G SKG A+ L + G V + + GGF++W ++
Sbjct: 59 TPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ 99
>sp|Q3Z3H6|PYRD_SHISS Dihydroorotate dehydrogenase (quinone) OS=Shigella sonnei (strain
Ss046) GN=pyrD PE=3 SV=1
Length = 336
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 15/107 (14%)
Query: 100 VKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNFSTDL-----KEA 154
V+ ++D + ++ T++ +S + + N DQTGG +G L ST++ E
Sbjct: 235 VRHNIDGVIATNTTLDRSLVQGMKNC--------DQTGGLSGRPLQLKSTEIIRRLSLEL 286
Query: 155 SSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRD 201
+ + + V + ++++A E + GAS V Y G + PP I++
Sbjct: 287 NGRLPIIGVGGI-DSVIAAREKIAAGASLVQIYSGFIFKG-PPLIKE 331
>sp|Q31YK8|PYRD_SHIBS Dihydroorotate dehydrogenase (quinone) OS=Shigella boydii serotype
4 (strain Sb227) GN=pyrD PE=3 SV=1
Length = 336
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 15/107 (14%)
Query: 100 VKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNFSTDL-----KEA 154
V+ ++D + ++ T++ +S + + N DQTGG +G L ST++ E
Sbjct: 235 VRHNIDGVIATNTTLDRSLVQGMKNC--------DQTGGLSGRPLQLKSTEIIRRLSLEL 286
Query: 155 SSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRD 201
+ + + V + ++++A E + GAS V Y G + PP I++
Sbjct: 287 NGRLPIIGVGGI-DSVIAAREKIAAGASLVQIYSGFIFKG-PPLIKE 331
>sp|B2TUD4|PYRD_SHIB3 Dihydroorotate dehydrogenase (quinone) OS=Shigella boydii serotype
18 (strain CDC 3083-94 / BS512) GN=pyrD PE=3 SV=1
Length = 336
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 15/107 (14%)
Query: 100 VKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNFSTDL-----KEA 154
V+ ++D + ++ T++ +S + + N DQTGG +G L ST++ E
Sbjct: 235 VRHNIDGVIATNTTLDRSLVQGMKNC--------DQTGGLSGRPLQLKSTEIIRRLSLEL 286
Query: 155 SSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRD 201
+ + + V + ++++A E + GAS V Y G + PP I++
Sbjct: 287 NGRLPIIGVGGI-DSVIAAREKIAAGASLVQIYSGFIFKG-PPLIKE 331
>sp|B6I919|PYRD_ECOSE Dihydroorotate dehydrogenase (quinone) OS=Escherichia coli (strain
SE11) GN=pyrD PE=3 SV=1
Length = 336
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 15/107 (14%)
Query: 100 VKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNFSTDL-----KEA 154
V+ ++D + ++ T++ +S + + N DQTGG +G L ST++ E
Sbjct: 235 VRHNIDGVIATNTTLDRSLVQGMKNC--------DQTGGLSGRPLQLKSTEIIRRLSLEL 286
Query: 155 SSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRD 201
+ + + V + ++++A E + GAS V Y G + PP I++
Sbjct: 287 NGRLPIIGVGGI-DSVIAAREKIAAGASLVQIYSGFIFKG-PPLIKE 331
>sp|P0A7E1|PYRD_ECOLI Dihydroorotate dehydrogenase (quinone) OS=Escherichia coli (strain
K12) GN=pyrD PE=1 SV=1
Length = 336
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 15/107 (14%)
Query: 100 VKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNFSTDL-----KEA 154
V+ ++D + ++ T++ +S + + N DQTGG +G L ST++ E
Sbjct: 235 VRHNIDGVIATNTTLDRSLVQGMKNC--------DQTGGLSGRPLQLKSTEIIRRLSLEL 286
Query: 155 SSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRD 201
+ + + V + ++++A E + GAS V Y G + PP I++
Sbjct: 287 NGRLPIIGVGGI-DSVIAAREKIAAGASLVQIYSGFIFKG-PPLIKE 331
>sp|B1IVY7|PYRD_ECOLC Dihydroorotate dehydrogenase (quinone) OS=Escherichia coli (strain
ATCC 8739 / DSM 1576 / Crooks) GN=pyrD PE=3 SV=1
Length = 336
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 15/107 (14%)
Query: 100 VKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNFSTDL-----KEA 154
V+ ++D + ++ T++ +S + + N DQTGG +G L ST++ E
Sbjct: 235 VRHNIDGVIATNTTLDRSLVQGMKNC--------DQTGGLSGRPLQLKSTEIIRRLSLEL 286
Query: 155 SSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRD 201
+ + + V + ++++A E + GAS V Y G + PP I++
Sbjct: 287 NGRLPIIGVGGI-DSVIAAREKIAAGASLVQIYSGFIFKG-PPLIKE 331
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 198,332,383
Number of Sequences: 539616
Number of extensions: 8247539
Number of successful extensions: 23276
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 173
Number of HSP's that attempted gapping in prelim test: 22571
Number of HSP's gapped (non-prelim): 609
length of query: 558
length of database: 191,569,459
effective HSP length: 123
effective length of query: 435
effective length of database: 125,196,691
effective search space: 54460560585
effective search space used: 54460560585
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)