Query 008635
Match_columns 558
No_of_seqs 569 out of 1803
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 14:39:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008635.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008635hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01533 4RHOD_Repeat_2 Member 99.8 1.8E-20 3.9E-25 164.1 11.3 99 271-397 10-109 (109)
2 cd01518 RHOD_YceA Member of th 99.8 6.2E-20 1.3E-24 158.5 9.8 98 272-394 3-100 (101)
3 PRK00162 glpE thiosulfate sulf 99.8 3.3E-19 7.2E-24 155.9 10.5 101 271-402 5-105 (108)
4 cd01534 4RHOD_Repeat_3 Member 99.8 4.8E-19 1E-23 151.5 10.0 93 273-394 1-94 (95)
5 cd01527 RHOD_YgaP Member of th 99.8 4.3E-19 9.4E-24 152.2 9.7 97 272-400 3-99 (99)
6 cd01523 RHOD_Lact_B Member of 99.8 8.3E-19 1.8E-23 151.0 9.5 99 273-394 1-99 (100)
7 PLN02160 thiosulfate sulfurtra 99.8 1E-18 2.2E-23 160.9 10.7 115 270-404 14-130 (136)
8 cd01526 RHOD_ThiF Member of th 99.8 2.5E-18 5.4E-23 154.1 9.9 111 270-400 7-118 (122)
9 cd01521 RHOD_PspE2 Member of t 99.8 5.1E-18 1.1E-22 149.3 10.8 101 270-400 7-110 (110)
10 cd01528 RHOD_2 Member of the R 99.8 6E-18 1.3E-22 146.1 10.9 97 272-395 1-98 (101)
11 cd01444 GlpE_ST GlpE sulfurtra 99.7 4.6E-18 9.9E-23 144.2 9.5 93 272-394 1-95 (96)
12 cd01525 RHOD_Kc Member of the 99.7 1.1E-17 2.4E-22 144.5 9.9 100 273-394 1-104 (105)
13 cd01524 RHOD_Pyr_redox Member 99.7 1.5E-17 3.3E-22 141.0 9.5 89 273-394 1-89 (90)
14 cd01447 Polysulfide_ST Polysul 99.7 1.1E-17 2.5E-22 143.3 8.5 102 273-397 1-103 (103)
15 cd01535 4RHOD_Repeat_4 Member 99.7 1.7E-17 3.6E-22 154.5 10.2 98 278-405 2-99 (145)
16 TIGR03865 PQQ_CXXCW PQQ-depend 99.7 2.1E-17 4.5E-22 156.6 10.7 110 271-400 36-162 (162)
17 cd01520 RHOD_YbbB Member of th 99.7 2.4E-17 5.3E-22 149.2 10.6 111 273-395 1-126 (128)
18 cd01519 RHOD_HSP67B2 Member of 99.7 2.3E-17 5E-22 142.5 9.4 104 274-394 2-105 (106)
19 cd01530 Cdc25 Cdc25 phosphatas 99.7 2.9E-17 6.4E-22 148.0 10.3 99 272-394 3-120 (121)
20 PRK08762 molybdopterin biosynt 99.7 3.2E-17 7E-22 173.7 12.3 109 271-409 3-111 (376)
21 cd01448 TST_Repeat_1 Thiosulfa 99.7 1.5E-17 3.3E-22 147.8 7.8 110 273-397 2-122 (122)
22 PF00581 Rhodanese: Rhodanese- 99.7 5.4E-17 1.2E-21 139.7 10.9 108 274-396 1-113 (113)
23 COG0607 PspE Rhodanese-related 99.7 2.6E-17 5.7E-22 142.1 8.5 91 284-402 17-108 (110)
24 smart00450 RHOD Rhodanese Homo 99.7 4E-17 8.8E-22 136.0 8.8 99 285-399 2-100 (100)
25 KOG1530 Rhodanese-related sulf 99.7 4.3E-17 9.4E-22 148.6 8.5 115 269-401 21-135 (136)
26 cd01529 4RHOD_Repeats Member o 99.7 6.7E-17 1.5E-21 138.3 8.6 86 285-394 10-95 (96)
27 cd01449 TST_Repeat_2 Thiosulfa 99.7 8.8E-17 1.9E-21 141.7 8.8 106 273-394 1-117 (118)
28 cd01532 4RHOD_Repeat_1 Member 99.7 9E-17 1.9E-21 137.3 8.5 84 284-395 7-92 (92)
29 cd01531 Acr2p Eukaryotic arsen 99.7 1.4E-16 3E-21 140.6 9.7 101 271-396 2-112 (113)
30 cd01522 RHOD_1 Member of the R 99.7 6.3E-17 1.4E-21 144.5 7.5 103 273-395 1-104 (117)
31 PRK01415 hypothetical protein; 99.6 9.2E-16 2E-20 154.7 10.6 102 271-397 112-213 (247)
32 TIGR02981 phageshock_pspE phag 99.6 9.2E-16 2E-20 134.9 8.9 81 286-395 17-97 (101)
33 cd00158 RHOD Rhodanese Homolog 99.6 8.5E-16 1.8E-20 126.8 8.0 88 278-394 2-89 (89)
34 cd01443 Cdc25_Acr2p Cdc25 enzy 99.6 1.2E-15 2.7E-20 134.8 9.4 99 271-394 2-112 (113)
35 PRK11493 sseA 3-mercaptopyruva 99.6 5.3E-16 1.1E-20 158.1 8.1 119 272-405 6-138 (281)
36 PRK05320 rhodanese superfamily 99.6 1.2E-15 2.7E-20 154.6 10.5 104 269-396 108-216 (257)
37 PLN02723 3-mercaptopyruvate su 99.6 1.1E-15 2.3E-20 159.1 8.6 119 271-404 22-153 (320)
38 PRK10287 thiosulfate:cyanide s 99.6 2.9E-15 6.2E-20 132.6 9.0 81 286-395 19-99 (104)
39 cd01445 TST_Repeats Thiosulfat 99.6 2E-15 4.3E-20 139.4 7.4 108 273-394 1-137 (138)
40 PRK07878 molybdopterin biosynt 99.6 4.6E-15 1E-19 158.4 10.6 175 189-399 184-387 (392)
41 PRK09629 bifunctional thiosulf 99.6 5.1E-15 1.1E-19 166.1 11.4 119 271-404 9-131 (610)
42 PRK00142 putative rhodanese-re 99.6 7.2E-15 1.6E-19 153.0 11.0 100 271-395 112-211 (314)
43 PRK11493 sseA 3-mercaptopyruva 99.6 3.4E-15 7.4E-20 152.2 7.0 113 274-403 156-280 (281)
44 PRK07411 hypothetical protein; 99.5 1.9E-14 4.2E-19 153.7 11.0 182 189-400 176-386 (390)
45 PLN02723 3-mercaptopyruvate su 99.5 7.6E-15 1.7E-19 152.7 7.6 114 273-402 192-317 (320)
46 PRK05600 thiamine biosynthesis 99.5 1.1E-14 2.4E-19 154.6 6.8 166 189-391 182-369 (370)
47 COG2897 SseA Rhodanese-related 99.5 1.2E-13 2.7E-18 141.9 11.9 115 273-403 158-283 (285)
48 PRK05597 molybdopterin biosynt 99.5 8.6E-14 1.9E-18 147.0 9.3 171 189-396 166-355 (355)
49 COG2897 SseA Rhodanese-related 99.5 1.1E-13 2.4E-18 142.3 9.1 120 272-406 12-142 (285)
50 KOG2017 Molybdopterin synthase 99.5 8.8E-14 1.9E-18 144.4 8.1 181 186-396 201-419 (427)
51 TIGR03167 tRNA_sel_U_synt tRNA 99.5 1.4E-13 3E-18 143.3 9.0 108 287-403 2-122 (311)
52 cd01446 DSP_MapKP N-terminal r 99.5 4.1E-13 8.8E-18 121.6 10.9 113 272-395 1-126 (132)
53 PRK11784 tRNA 2-selenouridine 99.5 2.3E-13 5E-18 143.4 10.6 118 274-402 4-135 (345)
54 PRK09629 bifunctional thiosulf 99.5 7.9E-14 1.7E-18 156.6 7.3 116 272-403 148-272 (610)
55 PRK01269 tRNA s(4)U8 sulfurtra 99.1 1.2E-10 2.6E-15 127.8 8.3 81 276-388 398-482 (482)
56 COG1054 Predicted sulfurtransf 98.9 9.5E-10 2.1E-14 113.0 5.9 99 272-395 114-212 (308)
57 KOG1529 Mercaptopyruvate sulfu 98.8 9.2E-09 2E-13 105.2 7.1 119 272-405 6-139 (286)
58 KOG3772 M-phase inducer phosph 98.5 1.5E-07 3.3E-12 98.1 7.6 104 270-396 155-276 (325)
59 KOG1529 Mercaptopyruvate sulfu 98.1 4E-06 8.8E-11 86.2 5.2 94 286-395 171-275 (286)
60 PRK09564 coenzyme A disulfide 97.9 3.4E-06 7.4E-11 90.5 1.8 113 110-255 299-415 (444)
61 PRK07846 mycothione reductase; 97.9 4.2E-06 9E-11 91.1 0.8 127 92-256 294-425 (451)
62 TIGR01424 gluta_reduc_2 glutat 97.9 3.7E-06 7.9E-11 91.1 0.4 127 92-255 295-425 (446)
63 PRK06370 mercuric reductase; V 97.8 4.6E-06 9.9E-11 90.6 0.6 126 92-255 303-432 (463)
64 PRK14727 putative mercuric red 97.8 7.1E-06 1.5E-10 89.8 1.0 126 92-256 315-444 (479)
65 TIGR03385 CoA_CoA_reduc CoA-di 97.7 1.3E-05 2.8E-10 85.9 1.8 112 110-254 286-401 (427)
66 PRK13512 coenzyme A disulfide 97.7 1.7E-05 3.6E-10 85.9 1.7 113 110-256 294-410 (438)
67 PRK06467 dihydrolipoamide dehy 97.6 1.8E-05 4E-10 86.5 0.9 126 92-256 306-435 (471)
68 PRK07818 dihydrolipoamide dehy 97.6 2.1E-05 4.6E-10 85.5 0.9 126 92-256 305-436 (466)
69 PRK06416 dihydrolipoamide dehy 97.6 2.2E-05 4.7E-10 85.1 0.8 124 92-256 303-432 (462)
70 PRK05249 soluble pyridine nucl 97.6 2.9E-05 6.3E-10 84.0 1.8 126 92-256 304-433 (461)
71 PRK13748 putative mercuric red 97.5 3.4E-05 7.3E-10 85.7 1.2 124 93-255 398-525 (561)
72 PRK05976 dihydrolipoamide dehy 97.5 3.5E-05 7.5E-10 84.1 0.9 125 93-256 313-442 (472)
73 TIGR02053 MerA mercuric reduct 97.5 3.4E-05 7.3E-10 83.8 0.8 125 92-255 298-427 (463)
74 PTZ00153 lipoamide dehydrogena 97.4 4.4E-05 9.6E-10 87.4 1.1 133 92-255 464-629 (659)
75 TIGR03452 mycothione_red mycot 97.4 4.5E-05 9.7E-10 83.1 0.9 125 93-256 298-428 (452)
76 PRK08010 pyridine nucleotide-d 97.4 4.9E-05 1.1E-09 82.0 1.1 126 92-256 286-417 (441)
77 PRK14694 putative mercuric red 97.3 5.6E-05 1.2E-09 82.4 0.7 125 93-256 305-433 (468)
78 PRK07845 flavoprotein disulfid 97.3 7.1E-05 1.5E-09 81.8 1.2 125 93-256 307-436 (466)
79 PRK06116 glutathione reductase 97.3 6E-05 1.3E-09 81.5 0.3 126 92-255 297-429 (450)
80 PRK06292 dihydrolipoamide dehy 97.3 6.8E-05 1.5E-09 81.2 0.6 126 92-256 300-430 (460)
81 TIGR01423 trypano_reduc trypan 97.2 9.7E-05 2.1E-09 81.6 1.0 127 91-255 319-450 (486)
82 COG5105 MIH1 Mitotic inducer, 97.2 0.00068 1.5E-08 71.0 7.0 100 269-395 240-357 (427)
83 PLN02507 glutathione reductase 97.2 0.00012 2.7E-09 80.9 1.4 124 93-255 333-462 (499)
84 PRK06115 dihydrolipoamide dehy 97.2 0.00011 2.3E-09 80.4 0.9 121 93-256 308-436 (466)
85 PTZ00058 glutathione reductase 97.1 0.00014 3E-09 81.9 0.6 112 110-255 414-536 (561)
86 PLN02546 glutathione reductase 97.1 0.00014 3.1E-09 81.7 0.5 127 93-256 383-512 (558)
87 PRK06912 acoL dihydrolipoamide 97.1 0.00015 3.3E-09 78.9 0.6 126 93-256 300-428 (458)
88 PRK06327 dihydrolipoamide dehy 97.0 0.00019 4.1E-09 78.5 1.0 126 91-256 315-445 (475)
89 TIGR01421 gluta_reduc_1 glutat 97.0 0.00021 4.5E-09 77.9 0.3 125 92-256 297-430 (450)
90 PF02852 Pyr_redox_dim: Pyridi 96.9 4.6E-05 1E-09 67.3 -4.6 81 144-256 9-90 (110)
91 TIGR01350 lipoamide_DH dihydro 96.8 0.00044 9.4E-09 74.9 0.7 126 91-256 300-431 (461)
92 PRK07251 pyridine nucleotide-d 96.7 0.00056 1.2E-08 73.8 1.0 115 110-256 298-416 (438)
93 TIGR01438 TGR thioredoxin and 96.6 0.00058 1.3E-08 75.3 0.5 126 92-256 312-448 (484)
94 PTZ00052 thioredoxin reductase 95.2 0.0054 1.2E-07 68.0 -0.1 63 92-159 309-374 (499)
95 COG2603 Predicted ATPase [Gene 95.1 0.036 7.8E-07 57.9 5.7 101 286-395 14-128 (334)
96 PF04273 DUF442: Putative phos 94.8 0.04 8.7E-07 49.7 4.6 84 271-374 13-105 (110)
97 TIGR01244 conserved hypothetic 94.0 0.17 3.7E-06 46.8 6.9 93 271-380 13-112 (135)
98 COG1249 Lpd Pyruvate/2-oxoglut 86.3 0.28 6.1E-06 54.4 0.9 66 93-163 305-372 (454)
99 PRK00142 putative rhodanese-re 85.2 0.17 3.7E-06 53.4 -1.4 53 269-331 12-64 (314)
100 PRK14989 nitrite reductase sub 82.1 0.5 1.1E-05 56.3 0.6 93 93-225 276-373 (847)
101 KOG1093 Predicted protein kina 80.4 0.52 1.1E-05 53.4 -0.0 96 272-393 623-718 (725)
102 PF11127 DUF2892: Protein of u 79.1 3.8 8.3E-05 33.2 4.7 45 429-477 14-58 (66)
103 KOG1717 Dual specificity phosp 79.1 2.4 5.1E-05 44.4 4.1 100 273-395 6-123 (343)
104 PF13350 Y_phosphatase3: Tyros 78.9 8.4 0.00018 36.3 7.6 32 270-302 27-58 (164)
105 cd00127 DSPc Dual specificity 75.4 16 0.00034 32.6 8.1 27 354-380 80-109 (139)
106 COG0446 HcaD Uncharacterized N 72.8 5.5 0.00012 41.4 5.1 97 108-237 290-391 (415)
107 PF14159 CAAD: CAAD domains of 72.6 5.5 0.00012 34.9 4.2 38 447-484 48-85 (90)
108 PLN02777 photosystem I P subun 71.0 4.5 9.8E-05 39.3 3.5 39 447-485 123-161 (167)
109 COG3453 Uncharacterized protei 69.5 14 0.0003 34.5 6.2 86 270-376 13-108 (130)
110 PF09992 DUF2233: Predicted pe 65.9 7.1 0.00015 36.8 3.8 41 353-393 98-143 (170)
111 PLN02806 complex I subunit 59.6 9.5 0.00021 32.9 3.0 55 428-488 5-68 (81)
112 PF05706 CDKN3: Cyclin-depende 57.1 28 0.0006 34.1 6.1 26 354-379 132-159 (168)
113 TIGR03167 tRNA_sel_U_synt tRNA 56.5 20 0.00043 38.0 5.5 69 272-368 137-209 (311)
114 TIGR02374 nitri_red_nirB nitri 55.5 3.8 8.3E-05 48.4 -0.0 61 92-154 266-330 (785)
115 PLN02727 NAD kinase 54.9 30 0.00065 42.0 7.0 26 271-298 267-293 (986)
116 PF01451 LMWPc: Low molecular 51.7 11 0.00024 34.2 2.4 36 358-393 1-41 (138)
117 PF03853 YjeF_N: YjeF-related 50.1 28 0.00061 33.3 4.9 50 353-403 23-87 (169)
118 smart00226 LMWPc Low molecular 42.9 26 0.00056 31.9 3.4 36 358-393 1-37 (140)
119 PLN03050 pyridoxine (pyridoxam 41.3 40 0.00087 34.6 4.7 30 356-386 61-93 (246)
120 smart00195 DSPc Dual specifici 39.3 39 0.00085 30.3 3.9 29 353-381 76-107 (138)
121 KOG3636 Uncharacterized conser 37.9 1.2E+02 0.0026 34.3 7.9 21 288-308 327-347 (669)
122 COG0062 Uncharacterized conser 35.8 91 0.002 31.4 6.1 31 355-386 49-82 (203)
123 cd02071 MM_CoA_mut_B12_BD meth 35.3 1.2E+02 0.0027 27.2 6.5 46 355-400 50-105 (122)
124 COG2453 CDC14 Predicted protei 34.8 57 0.0012 31.5 4.5 27 354-380 104-133 (180)
125 PF13344 Hydrolase_6: Haloacid 34.2 80 0.0017 27.6 4.9 28 354-381 29-57 (101)
126 PF05237 MoeZ_MoeB: MoeZ/MoeB 32.5 20 0.00044 30.4 0.9 32 189-222 3-34 (84)
127 PRK10126 tyrosine phosphatase; 32.1 56 0.0012 30.5 3.8 37 356-393 3-40 (147)
128 PF00782 DSPc: Dual specificit 31.8 66 0.0014 28.5 4.1 28 354-381 72-102 (133)
129 TIGR02689 ars_reduc_gluta arse 31.3 85 0.0018 28.4 4.8 35 357-391 2-37 (126)
130 TIGR00197 yjeF_nterm yjeF N-te 29.7 1.2E+02 0.0027 29.9 6.0 32 354-386 44-78 (205)
131 PRK10565 putative carbohydrate 28.9 83 0.0018 35.7 5.1 32 354-386 59-93 (508)
132 PLN03049 pyridoxine (pyridoxam 28.6 81 0.0018 35.4 4.9 44 356-400 60-116 (462)
133 PF05957 DUF883: Bacterial pro 27.7 84 0.0018 27.1 3.9 55 69-123 5-59 (94)
134 PRK11391 etp phosphotyrosine-p 27.0 76 0.0016 29.7 3.7 37 356-393 3-40 (144)
135 TIGR00640 acid_CoA_mut_C methy 27.0 4.5E+02 0.0097 24.4 8.8 52 354-405 52-113 (132)
136 PLN02918 pyridoxine (pyridoxam 26.0 96 0.0021 35.7 4.9 44 356-400 136-192 (544)
137 cd00115 LMWPc Substituted upda 25.1 63 0.0014 29.5 2.8 37 357-393 2-40 (141)
138 COG0647 NagD Predicted sugar p 24.2 1.3E+02 0.0029 31.4 5.2 26 354-379 39-65 (269)
139 PF02590 SPOUT_MTase: Predicte 23.7 2.3E+02 0.005 27.1 6.4 73 349-421 61-144 (155)
140 PRK07688 thiamine/molybdopteri 23.0 67 0.0015 34.4 2.9 37 271-308 277-318 (339)
141 PRK13530 arsenate reductase; P 21.8 1.6E+02 0.0034 27.1 4.8 35 356-390 4-39 (133)
142 PF03162 Y_phosphatase2: Tyros 21.4 90 0.0019 30.0 3.1 38 354-395 90-129 (164)
143 PRK12361 hypothetical protein; 20.8 1.4E+02 0.0031 33.8 5.0 17 354-370 174-191 (547)
144 COG0394 Wzb Protein-tyrosine-p 20.7 1.2E+02 0.0025 28.5 3.6 37 356-392 3-40 (139)
No 1
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.83 E-value=1.8e-20 Score=164.15 Aligned_cols=99 Identities=26% Similarity=0.210 Sum_probs=87.0
Q ss_pred cccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhh
Q 008635 271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 350 (558)
Q Consensus 271 ~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lk 350 (558)
..++++++.++++.+++.+|||||++.||..+|||||+ |+|+.++...+.++..
T Consensus 10 ~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgai--------nip~~~l~~~~~~l~~------------------ 63 (109)
T cd01533 10 PSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSV--------SCPGAELVLRVGELAP------------------ 63 (109)
T ss_pred CcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCce--------eCCHHHHHHHHHhcCC------------------
Confidence 46899999999864445789999999999999999999 9999988776655532
Q ss_pred ccCCCcEEEEEeCCChhHHHHHHHHHHcCCCc-EEEEcccHHHHHHcC
Q 008635 351 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMV-TFLVQGGFQSWVKEG 397 (558)
Q Consensus 351 gl~kdk~VVVyC~sG~RS~~AA~~L~~~Gfkn-Vy~LdGG~~aWkaAG 397 (558)
+++++||+||++|.||..+++.|+.+||++ |++|+||+.+|+.+|
T Consensus 64 --~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 64 --DPRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred --CCCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 257899999999999999999999999988 999999999999876
No 2
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.81 E-value=6.2e-20 Score=158.51 Aligned_cols=98 Identities=20% Similarity=0.205 Sum_probs=82.4
Q ss_pred ccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhc
Q 008635 272 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 351 (558)
Q Consensus 272 ~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkg 351 (558)
.|+++++.+++. +++.+|||||++.||+.+|||||+ |+|+.++......+.. +..
T Consensus 3 ~is~~~l~~~~~-~~~~~iiDvR~~~e~~~ghi~gA~--------~ip~~~~~~~~~~~~~----------------~~~ 57 (101)
T cd01518 3 YLSPAEWNELLE-DPEVVLLDVRNDYEYDIGHFKGAV--------NPDVDTFREFPFWLDE----------------NLD 57 (101)
T ss_pred cCCHHHHHHHHc-CCCEEEEEcCChhhhhcCEecccc--------CCCcccHhHhHHHHHh----------------hhh
Confidence 589999999984 567899999999999999999999 9999887643322210 001
Q ss_pred cCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHH
Q 008635 352 VQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWV 394 (558)
Q Consensus 352 l~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWk 394 (558)
.+++++|||||++|.||..+++.|+.+||++|++|+||+.+|.
T Consensus 58 ~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~ 100 (101)
T cd01518 58 LLKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGILKYL 100 (101)
T ss_pred hcCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHHHHh
Confidence 2478999999999999999999999999999999999999996
No 3
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.79 E-value=3.3e-19 Score=155.93 Aligned_cols=101 Identities=22% Similarity=0.319 Sum_probs=90.2
Q ss_pred cccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhh
Q 008635 271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 350 (558)
Q Consensus 271 ~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lk 350 (558)
..++++++.+++. +.+.++||||++.||..+|||||+ |+|+.++...+.++
T Consensus 5 ~~is~~el~~~l~-~~~~~ivDvR~~~e~~~ghi~gA~--------~ip~~~l~~~~~~~-------------------- 55 (108)
T PRK00162 5 ECINVEQAHQKLQ-EGGAVLVDIRDPQSFAMGHAPGAF--------HLTNDSLGAFMRQA-------------------- 55 (108)
T ss_pred cccCHHHHHHHHH-cCCCEEEEcCCHHHHhcCCCCCCe--------ECCHHHHHHHHHhc--------------------
Confidence 5789999999984 456899999999999999999999 99988877665443
Q ss_pred ccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceec
Q 008635 351 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKE 402 (558)
Q Consensus 351 gl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~ 402 (558)
+++++|++||.+|.||..++..|++.||++|++|+||+.+|+.+++|+++
T Consensus 56 --~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~ 105 (108)
T PRK00162 56 --DFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVA 105 (108)
T ss_pred --CCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHHHHhcCCCccC
Confidence 26889999999999999999999999999999999999999999999876
No 4
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.79 E-value=4.8e-19 Score=151.54 Aligned_cols=93 Identities=16% Similarity=0.271 Sum_probs=79.4
Q ss_pred cCHHHHHHHHhCC-CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhc
Q 008635 273 LSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 351 (558)
Q Consensus 273 ISp~El~elL~~~-e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkg 351 (558)
|+++++.+++.++ +..+|||||++.||..+|||||+ |+|+.++.....++..
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~--------~ip~~~l~~~~~~~~~------------------- 53 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFR--------HTPGGQLVQETDHFAP------------------- 53 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcE--------eCCHHHHHHHHHHhcc-------------------
Confidence 6889999998643 35789999999999999999999 9998877654433321
Q ss_pred cCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHH
Q 008635 352 VQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWV 394 (558)
Q Consensus 352 l~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWk 394 (558)
.++++||+||++|.||..+++.|+.+||+ |++|+||+.+|.
T Consensus 54 -~~~~~iv~~c~~G~rs~~aa~~L~~~G~~-v~~l~GG~~~W~ 94 (95)
T cd01534 54 -VRGARIVLADDDGVRADMTASWLAQMGWE-VYVLEGGLAAAL 94 (95)
T ss_pred -cCCCeEEEECCCCChHHHHHHHHHHcCCE-EEEecCcHHHhc
Confidence 14789999999999999999999999998 999999999996
No 5
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.79 E-value=4.3e-19 Score=152.25 Aligned_cols=97 Identities=28% Similarity=0.471 Sum_probs=85.0
Q ss_pred ccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhc
Q 008635 272 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 351 (558)
Q Consensus 272 ~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkg 351 (558)
.|+++++.++++. +.+|||+|+++||..+|||||+ |+|+.++......
T Consensus 3 ~i~~~el~~~~~~--~~~liDvR~~~e~~~~hi~ga~--------~ip~~~~~~~~~~---------------------- 50 (99)
T cd01527 3 TISPNDACELLAQ--GAVLVDIREPDEYLRERIPGAR--------LVPLSQLESEGLP---------------------- 50 (99)
T ss_pred ccCHHHHHHHHHC--CCEEEECCCHHHHHhCcCCCCE--------ECChhHhcccccC----------------------
Confidence 5899999998853 4899999999999999999999 9998877643211
Q ss_pred cCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCce
Q 008635 352 VQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRI 400 (558)
Q Consensus 352 l~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV 400 (558)
++++++||+||++|.|+..+++.|+++||++|++|+||+.+|+..|+|+
T Consensus 51 ~~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 51 LVGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 2368899999999999999999999999999999999999999999875
No 6
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.78 E-value=8.3e-19 Score=150.98 Aligned_cols=99 Identities=22% Similarity=0.224 Sum_probs=80.2
Q ss_pred cCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhcc
Q 008635 273 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIV 352 (558)
Q Consensus 273 ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl 352 (558)
|+++++.++++++++++|||||++.||+.+|||||+ |+|+.++.....+... ..+..+
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~--------~ip~~~~~~~~~~~~~--------------~~~~~~ 58 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGEN--------NTPYFDPYFDFLEIEE--------------DILDQL 58 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCc--------ccccccchHHHHHhhH--------------HHHhhC
Confidence 678999999865567899999999999999999999 9998776543200000 001123
Q ss_pred CCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHH
Q 008635 353 QDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWV 394 (558)
Q Consensus 353 ~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWk 394 (558)
+++++||+||++|.||..++..|+++||+ +++|.||+.+|+
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 47899999999999999999999999998 999999999996
No 7
>PLN02160 thiosulfate sulfurtransferase
Probab=99.78 E-value=1e-18 Score=160.90 Aligned_cols=115 Identities=16% Similarity=0.200 Sum_probs=87.5
Q ss_pred CcccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcc--cccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHh
Q 008635 270 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL--RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIR 347 (558)
Q Consensus 270 ~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGA--v~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~ 347 (558)
...+++.++.++++ ++.+|||||++.||..|||||| + |+|+..+... ..+. . ..+.. .+.
T Consensus 14 ~~~i~~~e~~~~~~--~~~~lIDVR~~~E~~~ghIpgA~~i--------niP~~~~~~~-~~l~-~-----~~~~~-~~~ 75 (136)
T PLN02160 14 VVSVDVSQAKTLLQ--SGHQYLDVRTQDEFRRGHCEAAKIV--------NIPYMLNTPQ-GRVK-N-----QEFLE-QVS 75 (136)
T ss_pred eeEeCHHHHHHHHh--CCCEEEECCCHHHHhcCCCCCccee--------cccchhcCcc-cccC-C-----HHHHH-HHH
Confidence 34689999999985 3568999999999999999999 7 7886433210 0010 0 00000 000
Q ss_pred hhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCC
Q 008635 348 NLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELK 404 (558)
Q Consensus 348 ~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~ 404 (558)
..++++++||+||++|.||..++..|.+.||++|++|.|||.+|.++|+|++...
T Consensus 76 --~~~~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 130 (136)
T PLN02160 76 --SLLNPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEE 130 (136)
T ss_pred --hccCCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccccc
Confidence 1135788999999999999999999999999999999999999999999998743
No 8
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.76 E-value=2.5e-18 Score=154.07 Aligned_cols=111 Identities=22% Similarity=0.241 Sum_probs=89.9
Q ss_pred CcccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhh
Q 008635 270 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL 349 (558)
Q Consensus 270 ~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~L 349 (558)
...|+++++.+++++.++++|||||+++||..+|||||+ |+|+.++..+..++... ...-
T Consensus 7 ~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai--------~ip~~~~~~~~~~~~~~------------~~~~ 66 (122)
T cd01526 7 EERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAI--------NIPLSELLSKAAELKSL------------QELP 66 (122)
T ss_pred ccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCe--------EccHHHHhhhhhhhhhh------------hhcc
Confidence 457999999999864467899999999999999999999 99998876654433210 0001
Q ss_pred hccCCCcEEEEEeCCChhHHHHHHHHHHcCC-CcEEEEcccHHHHHHcCCce
Q 008635 350 KIVQDRSKVIVMDADGTRSKGIARSLRKLGV-MVTFLVQGGFQSWVKEGLRI 400 (558)
Q Consensus 350 kgl~kdk~VVVyC~sG~RS~~AA~~L~~~Gf-knVy~LdGG~~aWkaAGLPV 400 (558)
..++++++||+||++|.||..+++.|+..|| ++|++|+||+.+|.....+.
T Consensus 67 ~~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~ 118 (122)
T cd01526 67 LDNDKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPT 118 (122)
T ss_pred cccCCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCcc
Confidence 1235789999999999999999999999999 79999999999999876544
No 9
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.75 E-value=5.1e-18 Score=149.32 Aligned_cols=101 Identities=19% Similarity=0.228 Sum_probs=85.3
Q ss_pred CcccCHHHHHHHHhCC-CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhh
Q 008635 270 SGDLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRN 348 (558)
Q Consensus 270 ~~~ISp~El~elL~~~-e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~ 348 (558)
...++++++.++++++ ++.+|||||++.||..+|||||+ ++|...+.....
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~--------~ip~~~l~~~~~-------------------- 58 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAI--------NLPHREICENAT-------------------- 58 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCE--------eCCHHHhhhHhh--------------------
Confidence 3479999999998644 46899999999999999999999 999877652210
Q ss_pred hhccCCCcEEEEEeCCCh--hHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCce
Q 008635 349 LKIVQDRSKVIVMDADGT--RSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRI 400 (558)
Q Consensus 349 Lkgl~kdk~VVVyC~sG~--RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV 400 (558)
..++++++||+||++|. ++..+++.|+++||+ +++|+||+.+|+.+|+|+
T Consensus 59 -~~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 59 -AKLDKEKLFVVYCDGPGCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred -hcCCCCCeEEEEECCCCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 12347899999999884 899999999999995 999999999999999975
No 10
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.75 E-value=6e-18 Score=146.10 Aligned_cols=97 Identities=27% Similarity=0.379 Sum_probs=83.1
Q ss_pred ccCHHHHHHHHhCC-CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhh
Q 008635 272 DLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 350 (558)
Q Consensus 272 ~ISp~El~elL~~~-e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lk 350 (558)
.|+++++.+++... .+.++||||+++||..+|||||+ |+|+.++......+..
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~--------~ip~~~~~~~~~~~~~------------------ 54 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFL--------HLPMSEIPERSKELDS------------------ 54 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCE--------ecCHHHHHHHHHHhcc------------------
Confidence 47899999998643 35899999999999999999999 9999887765544321
Q ss_pred ccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHH
Q 008635 351 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVK 395 (558)
Q Consensus 351 gl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWka 395 (558)
.+++++||+||++|.||..+++.|.++||++|++|+||+.+|..
T Consensus 55 -~~~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~w~~ 98 (101)
T cd01528 55 -DNPDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDAWSL 98 (101)
T ss_pred -cCCCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHHHhh
Confidence 12588999999999999999999999999999999999999975
No 11
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.75 E-value=4.6e-18 Score=144.17 Aligned_cols=93 Identities=27% Similarity=0.377 Sum_probs=81.7
Q ss_pred ccCHHHHHHHHhCCCCcEEEEeCChhhhhh--cCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhh
Q 008635 272 DLSPKSTLELLRGKENAVLIDVRHEDLRER--DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL 349 (558)
Q Consensus 272 ~ISp~El~elL~~~e~avLIDVRsp~Ef~~--GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~L 349 (558)
.|+++++.+++++++++++||||++.||.. +|||||+ |+|+.++...+..
T Consensus 1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~--------~ip~~~~~~~~~~-------------------- 52 (96)
T cd01444 1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAI--------HLDEDSLDDWLGD-------------------- 52 (96)
T ss_pred CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCe--------eCCHHHHHHHHhh--------------------
Confidence 378899999885435689999999999999 9999999 9999887665433
Q ss_pred hccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHH
Q 008635 350 KIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWV 394 (558)
Q Consensus 350 kgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWk 394 (558)
++++++||+||++|.|+..+++.|+..||++|++|+||+.+|+
T Consensus 53 --~~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 53 --LDRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred --cCCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 2378899999999999999999999999999999999999996
No 12
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.73 E-value=1.1e-17 Score=144.50 Aligned_cols=100 Identities=17% Similarity=0.205 Sum_probs=78.5
Q ss_pred cCHHHHHHHHhCC-CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhh---hHHhhhcCCccchhhHHHHHHhh
Q 008635 273 LSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGG---SVKKLLRGGRELDDTLTAAVIRN 348 (558)
Q Consensus 273 ISp~El~elL~~~-e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~---~l~eL~~~~~~L~~~l~aa~i~~ 348 (558)
|+++++.+++.++ ++.+|||||++.||..||||||+ |+|+.++.. .+..++. ...+..
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~--------~ip~~~~~~~~~~~~~~~~----------~~~~~~ 62 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSI--------NIPFSSVFLKEGELEQLPT----------VPRLEN 62 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCE--------eCCHHHhcccccccccccc----------hHHHHh
Confidence 6889999998642 36799999999999999999999 999876532 1111110 000000
Q ss_pred hhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHH
Q 008635 349 LKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWV 394 (558)
Q Consensus 349 Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWk 394 (558)
.++++||+||.+|.||..+++.|+.+||++|++|+||+.+|+
T Consensus 63 ----~~~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 63 ----YKGKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred ----hcCCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 147899999999999999999999999999999999999996
No 13
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.73 E-value=1.5e-17 Score=140.95 Aligned_cols=89 Identities=22% Similarity=0.271 Sum_probs=78.3
Q ss_pred cCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhcc
Q 008635 273 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIV 352 (558)
Q Consensus 273 ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl 352 (558)
++|+++.+++. ++.++||+|++++|..+|||||+ |+|+.++...+.. +
T Consensus 1 ~~~~e~~~~~~--~~~~iiD~R~~~~~~~~hipgA~--------~ip~~~~~~~~~~----------------------~ 48 (90)
T cd01524 1 VQWHELDNYRA--DGVTLIDVRTPQEFEKGHIKGAI--------NIPLDELRDRLNE----------------------L 48 (90)
T ss_pred CCHHHHHHHhc--CCCEEEECCCHHHHhcCCCCCCE--------eCCHHHHHHHHHh----------------------c
Confidence 47889999873 57899999999999999999999 9998877655432 2
Q ss_pred CCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHH
Q 008635 353 QDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWV 394 (558)
Q Consensus 353 ~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWk 394 (558)
+++++||+||++|.++..+++.|++.|| ++++|+||+.+|+
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 3678999999999999999999999999 9999999999996
No 14
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.72 E-value=1.1e-17 Score=143.25 Aligned_cols=102 Identities=22% Similarity=0.304 Sum_probs=80.9
Q ss_pred cCHHHHHHHHhCCCCcEEEEeCChhhh-hhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhc
Q 008635 273 LSPKSTLELLRGKENAVLIDVRHEDLR-ERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 351 (558)
Q Consensus 273 ISp~El~elL~~~e~avLIDVRsp~Ef-~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkg 351 (558)
|+++++.++++ +++.+|||+|++.+| ..||||||+ |+|+..+......... + ...+
T Consensus 1 is~~el~~~~~-~~~~~iiDvR~~~~~~~~ghIpga~--------~ip~~~~~~~~~~~~~----~----------~~~~ 57 (103)
T cd01447 1 LSPEDARALLG-SPGVLLVDVRDPRELERTGMIPGAF--------HAPRGMLEFWADPDSP----Y----------HKPA 57 (103)
T ss_pred CCHHHHHHHHh-CCCeEEEECCCHHHHHhcCCCCCcE--------EcccchhhhhcCcccc----c----------cccC
Confidence 57889999884 457899999999998 569999999 9997665432211000 0 0012
Q ss_pred cCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcC
Q 008635 352 VQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEG 397 (558)
Q Consensus 352 l~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAG 397 (558)
++++++||+||++|.|+..+++.|+.+||++|++|+||+.+|..+|
T Consensus 58 ~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 58 FAEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 4578999999999999999999999999999999999999998765
No 15
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.72 E-value=1.7e-17 Score=154.48 Aligned_cols=98 Identities=18% Similarity=0.293 Sum_probs=84.3
Q ss_pred HHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhccCCCcE
Q 008635 278 TLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSK 357 (558)
Q Consensus 278 l~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~ 357 (558)
+.+++..+.+.+|||||++.+|+.+|||||+ ++|..+|...+.++ +++++
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi--------~~~~~~l~~~l~~l----------------------~~~~~ 51 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAW--------WVLRAQLAQALEKL----------------------PAAER 51 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCce--------eCCHHHHHHHHHhc----------------------CCCCC
Confidence 3455544456899999999999999999999 89988777665543 25789
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCCc
Q 008635 358 VIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKS 405 (558)
Q Consensus 358 VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~~ 405 (558)
||+||.+|.+|..+++.|+..||++|++|+||+.+|+.+|+|++...+
T Consensus 52 vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~aW~~~g~pl~~~~~ 99 (145)
T cd01535 52 YVLTCGSSLLARFAAADLAALTVKPVFVLEGGTAAWIAAGLPVESGET 99 (145)
T ss_pred EEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHHHHHHCCCCcccCCC
Confidence 999999999999999999999999999999999999999999987544
No 16
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.72 E-value=2.1e-17 Score=156.58 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=82.0
Q ss_pred cccCHHHHHHHHhCCCCcEEEEeCChh----hhhhc---------CCCcccccccccccCCCc---hhhhhhHHhhhcCC
Q 008635 271 GDLSPKSTLELLRGKENAVLIDVRHED----LRERD---------GIPDLRRGARFRYASVYL---PEVGGSVKKLLRGG 334 (558)
Q Consensus 271 ~~ISp~El~elL~~~e~avLIDVRsp~----Ef~~G---------HIPGAv~a~~~~~~nIPL---~eL~~~l~eL~~~~ 334 (558)
..|+++++.+++. +++.+|||||+++ ||..| |||||+ |+|. .++......
T Consensus 36 ~~vs~~el~~~l~-~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv--------~ip~~~~~~l~~~~~~----- 101 (162)
T TIGR03865 36 RVLDTEAAQALLA-RGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSL--------WLPNTGYGNLAPAWQA----- 101 (162)
T ss_pred cccCHHHHHHHHh-CCCcEEEECCCCccccccccccceeccccCCCCCCcE--------EecccCCCCCCCchhH-----
Confidence 4799999999995 4568999999876 45544 999999 7774 222221100
Q ss_pred ccchhhHHHHHHhhhhccCCCcEEEEEeCCCh-hHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCce
Q 008635 335 RELDDTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRI 400 (558)
Q Consensus 335 ~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~sG~-RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV 400 (558)
.+ ...+..+....++++||+||++|. ||..+++.|+++||++|++|+|||.+|+.+|+|+
T Consensus 102 -----~~-~~~l~~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 102 -----YF-RRGLERATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred -----HH-HHHHHHhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 00 011111112247899999999997 8999999999999999999999999999999985
No 17
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.72 E-value=2.4e-17 Score=149.21 Aligned_cols=111 Identities=22% Similarity=0.345 Sum_probs=79.7
Q ss_pred cCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhH--HhhhcCCc----------cchhh
Q 008635 273 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSV--KKLLRGGR----------ELDDT 340 (558)
Q Consensus 273 ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l--~eL~~~~~----------~L~~~ 340 (558)
|+++++.+++. ++.+|||||++.||..||||||+ |+|+..+..+. ..+.+... .....
T Consensus 1 ~s~~el~~~l~--~~~~iiDvR~~~e~~~ghIpgAi--------nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (128)
T cd01520 1 ITAEDLLALRK--ADGPLIDVRSPKEFFEGHLPGAI--------NLPLLDDEERALVGTLYKQQGREAAIELGLELVSGK 70 (128)
T ss_pred CCHHHHHHHHh--cCCEEEECCCHHHhccCcCCCcE--------EccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhh
Confidence 68999999985 56899999999999999999999 99986443211 00000000 00000
Q ss_pred HHHHHHhhh--hccCCCcEEEEEeC-CChhHHHHHHHHHHcCCCcEEEEcccHHHHHH
Q 008635 341 LTAAVIRNL--KIVQDRSKVIVMDA-DGTRSKGIARSLRKLGVMVTFLVQGGFQSWVK 395 (558)
Q Consensus 341 l~aa~i~~L--kgl~kdk~VVVyC~-sG~RS~~AA~~L~~~GfknVy~LdGG~~aWka 395 (558)
+. .....+ .+++++++||+||+ +|.||..++++|+.+|| +|++|+||+.+|+.
T Consensus 71 ~~-~~~~~~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 71 LK-RILNEAWEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred HH-HHHHHHHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 00 011111 25678999999997 68899999999999999 69999999999975
No 18
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.72 E-value=2.3e-17 Score=142.54 Aligned_cols=104 Identities=22% Similarity=0.251 Sum_probs=79.8
Q ss_pred CHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhccC
Q 008635 274 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQ 353 (558)
Q Consensus 274 Sp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~ 353 (558)
+++++.++++.+++.+|||+|++.||..||||||+ |+|+.++.+... .... .+.. .+. ..+++
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~--------~ip~~~~~~~~~---~~~~----~~~~-~~~-~~~~~ 64 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAI--------NIPLSSLPDALA---LSEE----EFEK-KYG-FPKPS 64 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcE--------EechHHhhhhhC---CCHH----HHHH-Hhc-ccCCC
Confidence 57788888731467999999999999999999999 999877654211 0000 1111 111 11345
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHH
Q 008635 354 DRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWV 394 (558)
Q Consensus 354 kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWk 394 (558)
++++||+||.+|.||..+++.|+.+||++|++|+||+.+|.
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~~W~ 105 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWLDWA 105 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHHHHc
Confidence 78999999999999999999999999999999999999996
No 19
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.71 E-value=2.9e-17 Score=148.04 Aligned_cols=99 Identities=21% Similarity=0.301 Sum_probs=80.8
Q ss_pred ccCHHHHHHHHhCC-----CCcEEEEeCChhhhhhcCCCcccccccccccCCCch-hhhhhHHhhhcCCccchhhHHHHH
Q 008635 272 DLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLP-EVGGSVKKLLRGGRELDDTLTAAV 345 (558)
Q Consensus 272 ~ISp~El~elL~~~-----e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~-eL~~~l~eL~~~~~~L~~~l~aa~ 345 (558)
.|+++++.+++.++ ++++|||||++.||..||||||+ |+|+. ++...+......
T Consensus 3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~--------~ip~~~~l~~~~~~~~~~------------ 62 (121)
T cd01530 3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAV--------NLSTKDELEEFFLDKPGV------------ 62 (121)
T ss_pred ccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCE--------eCCcHHHHHHHHHHhhcc------------
Confidence 58999999999643 46899999999999999999999 99986 465543221100
Q ss_pred HhhhhccCCCcEEEEEeC-CChhHHHHHHHHHHc------------CCCcEEEEcccHHHHH
Q 008635 346 IRNLKIVQDRSKVIVMDA-DGTRSKGIARSLRKL------------GVMVTFLVQGGFQSWV 394 (558)
Q Consensus 346 i~~Lkgl~kdk~VVVyC~-sG~RS~~AA~~L~~~------------GfknVy~LdGG~~aWk 394 (558)
..++++++|||||. +|.||..+++.|+.+ ||++||+|+|||.+|.
T Consensus 63 ----~~~~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 63 ----ASKKKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred ----cccCCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 11347899999997 999999999999985 9999999999999984
No 20
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.71 E-value=3.2e-17 Score=173.67 Aligned_cols=109 Identities=27% Similarity=0.352 Sum_probs=93.6
Q ss_pred cccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhh
Q 008635 271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 350 (558)
Q Consensus 271 ~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lk 350 (558)
..|+++++.++++ ++.+|||||+++||..+|||||+ |+|+.++...+.++.
T Consensus 3 ~~is~~el~~~l~--~~~~ivDvR~~~e~~~ghIpgAi--------~ip~~~l~~~~~~~~------------------- 53 (376)
T PRK08762 3 REISPAEARARAA--QGAVLIDVREAHERASGQAEGAL--------RIPRGFLELRIETHL------------------- 53 (376)
T ss_pred ceeCHHHHHHHHh--CCCEEEECCCHHHHhCCcCCCCE--------ECCHHHHHHHHhhhc-------------------
Confidence 4689999999985 45899999999999999999999 999988766544322
Q ss_pred ccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCCccchh
Q 008635 351 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKSETAL 409 (558)
Q Consensus 351 gl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~~~~al 409 (558)
.+++++||+||++|.||..+++.|+++||++|++|+||+.+|++.|+|++......+.
T Consensus 54 -~~~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~s~~ 111 (376)
T PRK08762 54 -PDRDREIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERPRLLTDE 111 (376)
T ss_pred -CCCCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcHHHHHhcCCccccccCCCHH
Confidence 1368999999999999999999999999999999999999999999999886554333
No 21
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.71 E-value=1.5e-17 Score=147.79 Aligned_cols=110 Identities=24% Similarity=0.281 Sum_probs=83.6
Q ss_pred cCHHHHHHHHhCCCCcEEEEeCCh-------hhhhhcCCCcccccccccccCCCchhhhhhHHh---hhcCCccchhhHH
Q 008635 273 LSPKSTLELLRGKENAVLIDVRHE-------DLRERDGIPDLRRGARFRYASVYLPEVGGSVKK---LLRGGRELDDTLT 342 (558)
Q Consensus 273 ISp~El~elL~~~e~avLIDVRsp-------~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~e---L~~~~~~L~~~l~ 342 (558)
++++++.+++. +++.+|||+|++ .+|+.+|||||+ |+|+.++...... ...+..++...+
T Consensus 2 i~~~~l~~~l~-~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~- 71 (122)
T cd01448 2 VSPDWLAEHLD-DPDVRILDARWYLPDRDGRKEYLEGHIPGAV--------FFDLDEDLDDKSPGPHMLPSPEEFAELL- 71 (122)
T ss_pred cCHHHHHHHhC-CCCeEEEEeecCCCCCchhhHHhhCCCCCCE--------EcChhhccccCCCCCCCCCCHHHHHHHH-
Confidence 78999999985 457899999999 999999999999 9998776542111 111111111111
Q ss_pred HHHHhhhhccCCCcEEEEEeCC-ChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcC
Q 008635 343 AAVIRNLKIVQDRSKVIVMDAD-GTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEG 397 (558)
Q Consensus 343 aa~i~~Lkgl~kdk~VVVyC~s-G~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAG 397 (558)
...+++++++|||||++ |.++..+++.|+.+||++|++|+|||.+|..+|
T Consensus 72 -----~~~~~~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 72 -----GSLGISNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred -----HHcCCCCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 11245679999999999 589999999999999999999999999998865
No 22
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.71 E-value=5.4e-17 Score=139.68 Aligned_cols=108 Identities=29% Similarity=0.471 Sum_probs=80.3
Q ss_pred CHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhccC
Q 008635 274 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQ 353 (558)
Q Consensus 274 Sp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~ 353 (558)
||+|+.+++ .+++.+|||+|++.+|..+|||||+ |+|...+... ........+...........+
T Consensus 1 s~~el~~~l-~~~~~~liD~R~~~~~~~~hI~ga~--------~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 65 (113)
T PF00581_consen 1 SPEELKEML-ENESVLLIDVRSPEEYERGHIPGAV--------NIPFPSLDPD------EPSLSEDKLDEFLKELGKKID 65 (113)
T ss_dssp -HHHHHHHH-TTTTEEEEEESSHHHHHHSBETTEE--------EEEGGGGSSS------SSBCHHHHHHHHHHHHTHGST
T ss_pred CHHHHHhhh-hCCCeEEEEeCCHHHHHcCCCCCCc--------cccccccccc------ccccccccccccccccccccc
Confidence 689999999 6789999999999999999999999 8887554100 000001111112222233456
Q ss_pred CCcEEEEEeCCChhHHHHHHH-----HHHcCCCcEEEEcccHHHHHHc
Q 008635 354 DRSKVIVMDADGTRSKGIARS-----LRKLGVMVTFLVQGGFQSWVKE 396 (558)
Q Consensus 354 kdk~VVVyC~sG~RS~~AA~~-----L~~~GfknVy~LdGG~~aWkaA 396 (558)
++++||+||..|.++..++.. |..+||++|++|+|||.+|.++
T Consensus 66 ~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 66 KDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp TTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred ccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence 788999999999988887776 8999999999999999999874
No 23
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.71 E-value=2.6e-17 Score=142.06 Aligned_cols=91 Identities=31% Similarity=0.494 Sum_probs=80.7
Q ss_pred CCCCcEEEEeCChhhhhhcCCCc-ccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhccCCCcEEEEEe
Q 008635 284 GKENAVLIDVRHEDLRERDGIPD-LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMD 362 (558)
Q Consensus 284 ~~e~avLIDVRsp~Ef~~GHIPG-Av~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~VVVyC 362 (558)
..++.+|||||++.||+.+|||+ ++ |+|+.++......+. .+++++|||||
T Consensus 17 ~~~~~~liDvR~~~e~~~~~i~~~~~--------~ip~~~~~~~~~~~~--------------------~~~~~~ivv~C 68 (110)
T COG0607 17 AGEDAVLLDVREPEEYERGHIPGAAI--------NIPLSELKAAENLLE--------------------LPDDDPIVVYC 68 (110)
T ss_pred ccCCCEEEeccChhHhhhcCCCccee--------eeecccchhhhcccc--------------------cCCCCeEEEEe
Confidence 45689999999999999999999 98 999998877543321 13789999999
Q ss_pred CCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceec
Q 008635 363 ADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKE 402 (558)
Q Consensus 363 ~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~ 402 (558)
++|.||..++..|+.+||++++++.||+.+|...++|+..
T Consensus 69 ~~G~rS~~aa~~L~~~G~~~~~~l~gG~~~w~~~~~~~~~ 108 (110)
T COG0607 69 ASGVRSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVR 108 (110)
T ss_pred CCCCChHHHHHHHHHcCCccccccCCcHHHHHhcCCCccc
Confidence 9999999999999999999999999999999999999875
No 24
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.70 E-value=4e-17 Score=136.03 Aligned_cols=99 Identities=27% Similarity=0.366 Sum_probs=77.0
Q ss_pred CCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhccCCCcEEEEEeCC
Q 008635 285 KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD 364 (558)
Q Consensus 285 ~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~s 364 (558)
+++.+|||+|++.||..+|||||+ |+|+..+......... . .........+.+++++||+||.+
T Consensus 2 ~~~~~ivDvR~~~e~~~~hi~ga~--------~i~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~iv~~c~~ 65 (100)
T smart00450 2 DEKVVLLDVRSPEEYEGGHIPGAV--------NIPLSELLDRRGELDI-------L-EFEELLKRLGLDKDKPVVVYCRS 65 (100)
T ss_pred CCCEEEEECCCHHHhccCCCCCce--------eCCHHHhccCCCCcCH-------H-HHHHHHHHcCCCCCCeEEEEeCC
Confidence 357899999999999999999999 9998776543211000 0 00111112335578999999999
Q ss_pred ChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCc
Q 008635 365 GTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLR 399 (558)
Q Consensus 365 G~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLP 399 (558)
|.++..+++.|++.||++|++|+||+.+|+..|.|
T Consensus 66 g~~a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 66 GNRSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred CcHHHHHHHHHHHcCCCceEEecCCHHHHHhcCCC
Confidence 99999999999999999999999999999998865
No 25
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.69 E-value=4.3e-17 Score=148.62 Aligned_cols=115 Identities=22% Similarity=0.261 Sum_probs=87.0
Q ss_pred CCcccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhh
Q 008635 269 YSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRN 348 (558)
Q Consensus 269 ~~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~ 348 (558)
....++.++++++++ .++.++||||+|+||..||||.++ |||+........ + ++ .++ ..++..
T Consensus 21 ~~~sv~~~qvk~L~~-~~~~~llDVRepeEfk~gh~~~si--------NiPy~~~~~~~~-l-~~-----~eF-~kqvg~ 83 (136)
T KOG1530|consen 21 NPQSVSVEQVKNLLQ-HPDVVLLDVREPEEFKQGHIPASI--------NIPYMSRPGAGA-L-KN-----PEF-LKQVGS 83 (136)
T ss_pred CcEEEEHHHHHHHhc-CCCEEEEeecCHHHhhccCCcceE--------eccccccccccc-c-CC-----HHH-HHHhcc
Confidence 345789999999984 455999999999999999999999 999633222111 0 00 000 011111
Q ss_pred hhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCcee
Q 008635 349 LKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIK 401 (558)
Q Consensus 349 Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~ 401 (558)
.+ -+.|++|||+|++|.||..|...|..+||+||.++.|||.+|.+.++|..
T Consensus 84 ~k-p~~d~eiIf~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 84 SK-PPHDKEIIFGCASGVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred cC-CCCCCcEEEEeccCcchhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 11 23578999999999999999999999999999999999999999998764
No 26
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.69 E-value=6.7e-17 Score=138.34 Aligned_cols=86 Identities=23% Similarity=0.291 Sum_probs=70.7
Q ss_pred CCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhccCCCcEEEEEeCC
Q 008635 285 KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD 364 (558)
Q Consensus 285 ~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~s 364 (558)
+++.+|||||++.||+.+|||||+ |+|..++......+. .+...+++++||+||.+
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~--------~ip~~~~~~~~~~~~----------------~~~~~~~~~~ivv~c~~ 65 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKR--------SIPGAALVLRSQELQ----------------ALEAPGRATRYVLTCDG 65 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcE--------eCCHHHhcCCHHHHH----------------HhhcCCCCCCEEEEeCC
Confidence 457899999999999999999999 999776543322210 01113478899999999
Q ss_pred ChhHHHHHHHHHHcCCCcEEEEcccHHHHH
Q 008635 365 GTRSKGIARSLRKLGVMVTFLVQGGFQSWV 394 (558)
Q Consensus 365 G~RS~~AA~~L~~~GfknVy~LdGG~~aWk 394 (558)
|.++..+++.|+..||++|++|+||+.+|+
T Consensus 66 g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~ 95 (96)
T cd01529 66 SLLARFAAQELLALGGKPVALLDGGTSAWV 95 (96)
T ss_pred hHHHHHHHHHHHHcCCCCEEEeCCCHHHhc
Confidence 999999999999999999999999999996
No 27
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.68 E-value=8.8e-17 Score=141.67 Aligned_cols=106 Identities=19% Similarity=0.239 Sum_probs=79.9
Q ss_pred cCHHHHHHHHhCCCCcEEEEeCChhhhhh-----------cCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhH
Q 008635 273 LSPKSTLELLRGKENAVLIDVRHEDLRER-----------DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTL 341 (558)
Q Consensus 273 ISp~El~elL~~~e~avLIDVRsp~Ef~~-----------GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l 341 (558)
++++++.++++ +++.+|||||++.||.. ||||||+ |+|+.++......+ +...++.
T Consensus 1 ~s~~~l~~~l~-~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~--------~~p~~~~~~~~~~~-~~~~~~~--- 67 (118)
T cd01449 1 VTAEEVLANLD-SGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAV--------NIPWTSLLDEDGTF-KSPEELR--- 67 (118)
T ss_pred CCHHHHHHhcC-CCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCc--------ccChHHhcCCCCCc-CCHHHHH---
Confidence 57889988884 45689999999999987 9999999 99987654321000 1101111
Q ss_pred HHHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHH
Q 008635 342 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWV 394 (558)
Q Consensus 342 ~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWk 394 (558)
..+.. .+++++++||+||++|.||.++++.|+.+||++|++|+||+.+|.
T Consensus 68 --~~~~~-~~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~ 117 (118)
T cd01449 68 --ALFAA-LGITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWG 117 (118)
T ss_pred --HHHHH-cCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhc
Confidence 01111 134578999999999999999999999999999999999999996
No 28
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.68 E-value=9e-17 Score=137.28 Aligned_cols=84 Identities=25% Similarity=0.335 Sum_probs=69.6
Q ss_pred CCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhccCCCcEEEEEeC
Q 008635 284 GKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDA 363 (558)
Q Consensus 284 ~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~ 363 (558)
++++++|||||++.||..+||||++ |+|+.++........ .+++++||+||+
T Consensus 7 ~~~~~~liDvR~~~e~~~~hi~ga~--------~ip~~~~~~~~~~~~--------------------~~~~~~ivl~c~ 58 (92)
T cd01532 7 AREEIALIDVREEDPFAQSHPLWAA--------NLPLSRLELDAWVRI--------------------PRRDTPIVVYGE 58 (92)
T ss_pred cCCCeEEEECCCHHHHhhCCcccCe--------eCCHHHHHhhhHhhC--------------------CCCCCeEEEEeC
Confidence 4567899999999999999999999 999877643211111 025889999999
Q ss_pred CChh--HHHHHHHHHHcCCCcEEEEcccHHHHHH
Q 008635 364 DGTR--SKGIARSLRKLGVMVTFLVQGGFQSWVK 395 (558)
Q Consensus 364 sG~R--S~~AA~~L~~~GfknVy~LdGG~~aWka 395 (558)
+|.| |..+++.|+.+||++|++|+||+.+|++
T Consensus 59 ~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 59 GGGEDLAPRAARRLSELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred CCCchHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence 9987 6899999999999999999999999963
No 29
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.68 E-value=1.4e-16 Score=140.61 Aligned_cols=101 Identities=18% Similarity=0.256 Sum_probs=81.4
Q ss_pred cccCHHHHHHHHhCC-CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhh
Q 008635 271 GDLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL 349 (558)
Q Consensus 271 ~~ISp~El~elL~~~-e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~L 349 (558)
..|+++++.+++..+ ++.++||||++ ||..+|||||+ ++|++++...+.++.+.
T Consensus 2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~--------~ip~~~l~~~~~~~~~~---------------- 56 (113)
T cd01531 2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSW--------HYPSTRFKAQLNQLVQL---------------- 56 (113)
T ss_pred CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCE--------ecCHHHHhhCHHHHHHH----------------
Confidence 358999999998643 45789999999 99999999999 99998887665554321
Q ss_pred hccCCCcEEEEEeC-CChhHHHHHHHHHH--------cCCCcEEEEcccHHHHHHc
Q 008635 350 KIVQDRSKVIVMDA-DGTRSKGIARSLRK--------LGVMVTFLVQGGFQSWVKE 396 (558)
Q Consensus 350 kgl~kdk~VVVyC~-sG~RS~~AA~~L~~--------~GfknVy~LdGG~~aWkaA 396 (558)
.+..++++||+||. +|.|+..+++.|.+ .||++|++|+||+.+|++.
T Consensus 57 ~~~~~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 57 LSGSKKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred HhcCCCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 11236789999998 66899999988754 4999999999999999864
No 30
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.68 E-value=6.3e-17 Score=144.51 Aligned_cols=103 Identities=25% Similarity=0.335 Sum_probs=80.6
Q ss_pred cCHHHHHHHHhCCCCcEEEEeCChhhhh-hcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhc
Q 008635 273 LSPKSTLELLRGKENAVLIDVRHEDLRE-RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 351 (558)
Q Consensus 273 ISp~El~elL~~~e~avLIDVRsp~Ef~-~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkg 351 (558)
|+++++.++++++++.++||||++.||+ .+|||||+ |+|+.++...... ..+.. .+.. .
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~--------~ip~~~~~~~~~~---------~~~~~-~l~~--~ 60 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAV--------HVAWQVYPDMEIN---------PNFLA-ELEE--K 60 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCce--------ecchhhccccccC---------HHHHH-HHHh--h
Confidence 6889999999654678999999999999 99999999 9997765421100 00000 0000 1
Q ss_pred cCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHH
Q 008635 352 VQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVK 395 (558)
Q Consensus 352 l~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWka 395 (558)
.+++++||+||++|.||..+++.|+++||++|++|.|||.+|+.
T Consensus 61 ~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~~~~ 104 (117)
T cd01522 61 VGKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLD 104 (117)
T ss_pred CCCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceecCCC
Confidence 24789999999999999999999999999999999999999965
No 31
>PRK01415 hypothetical protein; Validated
Probab=99.63 E-value=9.2e-16 Score=154.71 Aligned_cols=102 Identities=15% Similarity=0.216 Sum_probs=85.0
Q ss_pred cccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhh
Q 008635 271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 350 (558)
Q Consensus 271 ~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lk 350 (558)
..|+|+++.++++ ++++++||||++.||+.||||||+ |+|+..+++....... ..
T Consensus 112 ~~i~p~e~~~ll~-~~~~vvIDVRn~~E~~~Ghi~gAi--------nip~~~f~e~~~~~~~----------------~~ 166 (247)
T PRK01415 112 EYIEPKDWDEFIT-KQDVIVIDTRNDYEVEVGTFKSAI--------NPNTKTFKQFPAWVQQ----------------NQ 166 (247)
T ss_pred cccCHHHHHHHHh-CCCcEEEECCCHHHHhcCCcCCCC--------CCChHHHhhhHHHHhh----------------hh
Confidence 3599999999995 578999999999999999999999 9998877643211100 01
Q ss_pred ccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcC
Q 008635 351 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEG 397 (558)
Q Consensus 351 gl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAG 397 (558)
..+++++|++||.+|.||..|+..|+++||++||+|+||+.+|.+..
T Consensus 167 ~~~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~ 213 (247)
T PRK01415 167 ELLKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQYLEDT 213 (247)
T ss_pred hhcCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence 12478999999999999999999999999999999999999998754
No 32
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.63 E-value=9.2e-16 Score=134.94 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=71.1
Q ss_pred CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhccCCCcEEEEEeCCC
Q 008635 286 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADG 365 (558)
Q Consensus 286 e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~sG 365 (558)
....+||+|+++||..+|||||+ |+|+.++...+.++.. +++++||+||.+|
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAi--------nip~~~l~~~l~~~~~--------------------~~~~~vvlyC~~G 68 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAI--------NIPLKEIKEHIATAVP--------------------DKNDTVKLYCNAG 68 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCE--------ECCHHHHHHHHHHhCC--------------------CCCCeEEEEeCCC
Confidence 45689999999999999999999 9999988776655432 2678999999999
Q ss_pred hhHHHHHHHHHHcCCCcEEEEcccHHHHHH
Q 008635 366 TRSKGIARSLRKLGVMVTFLVQGGFQSWVK 395 (558)
Q Consensus 366 ~RS~~AA~~L~~~GfknVy~LdGG~~aWka 395 (558)
.||..++..|+++||++|+++ ||+.+|..
T Consensus 69 ~rS~~aa~~L~~~G~~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 69 RQSGMAKDILLDMGYTHAENA-GGIKDIAM 97 (101)
T ss_pred HHHHHHHHHHHHcCCCeEEec-CCHHHhhh
Confidence 999999999999999999985 99999975
No 33
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.63 E-value=8.5e-16 Score=126.81 Aligned_cols=88 Identities=30% Similarity=0.427 Sum_probs=73.5
Q ss_pred HHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhccCCCcE
Q 008635 278 TLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSK 357 (558)
Q Consensus 278 l~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~ 357 (558)
+.+++. +++.++||+|++.||+.+||||++ ++|..++...... .+.+++++
T Consensus 2 ~~~~~~-~~~~~iiD~R~~~~~~~~~i~ga~--------~~~~~~~~~~~~~--------------------~~~~~~~~ 52 (89)
T cd00158 2 LKELLD-DEDAVLLDVREPEEYAAGHIPGAI--------NIPLSELEERAAL--------------------LELDKDKP 52 (89)
T ss_pred hHHHhc-CCCeEEEECCCHHHHhccccCCCE--------ecchHHHhhHHHh--------------------hccCCCCe
Confidence 344553 568899999999999999999999 9998776543211 11247899
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHH
Q 008635 358 VIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWV 394 (558)
Q Consensus 358 VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWk 394 (558)
||+||..|.++..+++.|+..||+++++|+||+.+|+
T Consensus 53 vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 53 IVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred EEEEeCCCchHHHHHHHHHHhCcccEEEecCChhhcC
Confidence 9999999999999999999999999999999999994
No 34
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.62 E-value=1.2e-15 Score=134.76 Aligned_cols=99 Identities=18% Similarity=0.292 Sum_probs=76.6
Q ss_pred cccCHHHHHHHHhCC-----CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHH
Q 008635 271 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV 345 (558)
Q Consensus 271 ~~ISp~El~elL~~~-----e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~ 345 (558)
..|+++++.+++.++ ++.+|||||++ ||..+|||||+ |+|+.++...+.++...
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi--------~ip~~~~~~~~~~~~~~------------ 60 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSI--------NLPAQSCYQTLPQVYAL------------ 60 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCce--------ecchhHHHHHHHHHHHH------------
Confidence 358999999999643 36899999999 99999999999 99998877655443321
Q ss_pred HhhhhccCCCcEEEEEeCC-ChhHHHHHHHHH----HcCC--CcEEEEcccHHHHH
Q 008635 346 IRNLKIVQDRSKVIVMDAD-GTRSKGIARSLR----KLGV--MVTFLVQGGFQSWV 394 (558)
Q Consensus 346 i~~Lkgl~kdk~VVVyC~s-G~RS~~AA~~L~----~~Gf--knVy~LdGG~~aWk 394 (558)
+. ..+.++||+||.+ |.||..++..|. +.|| .++++|+||+.+|.
T Consensus 61 ---~~-~~~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 61 ---FS-LAGVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred ---hh-hcCCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 00 0245789999997 579888886654 3475 78999999999995
No 35
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.62 E-value=5.3e-16 Score=158.12 Aligned_cols=119 Identities=16% Similarity=0.221 Sum_probs=89.5
Q ss_pred ccCHHHHHHHHhCCCCcEEEEeCC----------hhhhhhcCCCcccccccccccCCCchhhhhhHH---hhhcCCccch
Q 008635 272 DLSPKSTLELLRGKENAVLIDVRH----------EDLRERDGIPDLRRGARFRYASVYLPEVGGSVK---KLLRGGRELD 338 (558)
Q Consensus 272 ~ISp~El~elL~~~e~avLIDVRs----------p~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~---eL~~~~~~L~ 338 (558)
.++++++.+++ ++++.+|||+|+ +.+|..||||||+ |+|+..+..... .+.+....++
T Consensus 6 lvs~~~l~~~l-~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (281)
T PRK11493 6 FVAADWLAEHI-DDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAV--------FFDIEALSDHTSPLPHMMPRPETFA 76 (281)
T ss_pred ccCHHHHHHhc-CCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCE--------EcCHHHhcCCCCCCCCCCCCHHHHH
Confidence 48999999998 456799999996 7899999999999 887665433211 1111111111
Q ss_pred hhHHHHHHhhhhccCCCcEEEEEeCCCh-hHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCCc
Q 008635 339 DTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKS 405 (558)
Q Consensus 339 ~~l~aa~i~~Lkgl~kdk~VVVyC~sG~-RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~~ 405 (558)
.. +. -.+++++++||+||.+|. .+.++++.|+.+||++|++|+||+.+|.++|+|++...+
T Consensus 77 ~~-----~~-~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~ 138 (281)
T PRK11493 77 VA-----MR-ELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAV 138 (281)
T ss_pred HH-----HH-HcCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCC
Confidence 11 11 125678999999999877 467889999999999999999999999999999987643
No 36
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.62 E-value=1.2e-15 Score=154.65 Aligned_cols=104 Identities=13% Similarity=0.168 Sum_probs=84.7
Q ss_pred CCcccCHHHHHHHHhCC-----CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHH
Q 008635 269 YSGDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTA 343 (558)
Q Consensus 269 ~~~~ISp~El~elL~~~-----e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~a 343 (558)
....++++++.+++++. ++.+|||||++.||+.||||||+ |+|+.++.+....+...
T Consensus 108 ~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAi--------niPl~~f~~~~~~l~~~---------- 169 (257)
T PRK05320 108 RAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGAL--------DYRIDKFTEFPEALAAH---------- 169 (257)
T ss_pred cCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCE--------eCChhHhhhhHHHHHhh----------
Confidence 34579999999988542 24799999999999999999999 99998876543322110
Q ss_pred HHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHc
Q 008635 344 AVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKE 396 (558)
Q Consensus 344 a~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaA 396 (558)
+..+ ++++||+||++|.|+..|+..|++.||++|++|+||+.+|.+.
T Consensus 170 -----~~~~-kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 170 -----RADL-AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred -----hhhc-CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence 0011 6899999999999999999999999999999999999999873
No 37
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.61 E-value=1.1e-15 Score=159.11 Aligned_cols=119 Identities=16% Similarity=0.261 Sum_probs=89.8
Q ss_pred cccCHHHHHHHHhCCCCcEEEEeC--------C-hhhhhhcCCCcccccccccccCCCchhhhhhHHhh---hcCCccch
Q 008635 271 GDLSPKSTLELLRGKENAVLIDVR--------H-EDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKL---LRGGRELD 338 (558)
Q Consensus 271 ~~ISp~El~elL~~~e~avLIDVR--------s-p~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL---~~~~~~L~ 338 (558)
..|+++++.+++. +++.+|||+| + .++|..||||||+ ++|+.++....... .+....++
T Consensus 22 ~lvs~~~L~~~l~-~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi--------~i~~~~~~~~~~~~~~~lp~~~~~~ 92 (320)
T PLN02723 22 PVVSVDWLHANLR-EPDVKVLDASWYMPDEQRNPIQEYQVAHIPGAL--------FFDLDGISDRTTDLPHMLPSEEAFA 92 (320)
T ss_pred ceecHHHHHHHhc-CCCeEEEEeeccccCCCCchHHHHHhccCCCCe--------ecCHHHhcCCCCCcCCCCCCHHHHH
Confidence 4699999999984 5678999996 3 3789999999999 88876655432111 11111122
Q ss_pred hhHHHHHHhhhhccCCCcEEEEEeCCCh-hHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCC
Q 008635 339 DTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELK 404 (558)
Q Consensus 339 ~~l~aa~i~~Lkgl~kdk~VVVyC~sG~-RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~ 404 (558)
. .+.. .++.++++|||||..|. .+.+++|+|+.+||++|++|+||+.+|+++|+|++...
T Consensus 93 ~-----~l~~-~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~ 153 (320)
T PLN02723 93 A-----AVSA-LGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSA 153 (320)
T ss_pred H-----HHHH-cCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCC
Confidence 1 1221 24568899999999886 56788999999999999999999999999999998753
No 38
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.60 E-value=2.9e-15 Score=132.60 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=70.4
Q ss_pred CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhccCCCcEEEEEeCCC
Q 008635 286 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADG 365 (558)
Q Consensus 286 e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~sG 365 (558)
..-+|||+|+++||+.+|||||+ |+|+.++...+..+.. +++++||+||++|
T Consensus 19 ~~~~lIDvR~~~ef~~ghIpGAi--------niP~~~l~~~l~~l~~--------------------~~~~~IVlyC~~G 70 (104)
T PRK10287 19 AAEHWIDVRVPEQYQQEHVQGAI--------NIPLKEVKERIATAVP--------------------DKNDTVKLYCNAG 70 (104)
T ss_pred CCCEEEECCCHHHHhcCCCCccE--------ECCHHHHHHHHHhcCC--------------------CCCCeEEEEeCCC
Confidence 34589999999999999999999 9999888766554432 2578999999999
Q ss_pred hhHHHHHHHHHHcCCCcEEEEcccHHHHHH
Q 008635 366 TRSKGIARSLRKLGVMVTFLVQGGFQSWVK 395 (558)
Q Consensus 366 ~RS~~AA~~L~~~GfknVy~LdGG~~aWka 395 (558)
.||..+++.|.++||++|++ .||+.+|.-
T Consensus 71 ~rS~~aa~~L~~~G~~~v~~-~GG~~~~~~ 99 (104)
T PRK10287 71 RQSGQAKEILSEMGYTHAEN-AGGLKDIAM 99 (104)
T ss_pred hHHHHHHHHHHHcCCCeEEe-cCCHHHHhh
Confidence 99999999999999999987 699999964
No 39
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.59 E-value=2e-15 Score=139.40 Aligned_cols=108 Identities=21% Similarity=0.206 Sum_probs=79.8
Q ss_pred cCHHHHHHHHhC---CCCcEEEEeCCh--------hhhhh------------cCCCcccccccccccCCCchhhhhhHHh
Q 008635 273 LSPKSTLELLRG---KENAVLIDVRHE--------DLRER------------DGIPDLRRGARFRYASVYLPEVGGSVKK 329 (558)
Q Consensus 273 ISp~El~elL~~---~e~avLIDVRsp--------~Ef~~------------GHIPGAv~a~~~~~~nIPL~eL~~~l~e 329 (558)
++++++.+.+.+ +++.+|||+|.. ++|.. ||||||+ ++|+.++...-..
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv--------~~~~~~~~~~~~~ 72 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGAS--------FFDFEECLDEAGF 72 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCE--------eeCHHHhhCcCCC
Confidence 578899888852 457899999987 89988 9999999 8886655321111
Q ss_pred h---hcCCccchhhHHHHHHhhhhccCCCcEEEEEeCC---ChhHHHHHHHHHHcCCCcEEEEcccHHHHH
Q 008635 330 L---LRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD---GTRSKGIARSLRKLGVMVTFLVQGGFQSWV 394 (558)
Q Consensus 330 L---~~~~~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~s---G~RS~~AA~~L~~~GfknVy~LdGG~~aWk 394 (558)
. .++..+++. .+. -.++.++++||+||.. |.++.+++++|+.+||++|++|+||+.+|+
T Consensus 73 ~~~~~p~~~~~~~-----~~~-~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 73 EESMEPSEAEFAA-----MFE-AKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred CCCCCCCHHHHHH-----HHH-HcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 1 111111111 111 1256789999999986 779999999999999999999999999996
No 40
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.58 E-value=4.6e-15 Score=158.42 Aligned_cols=175 Identities=19% Similarity=0.267 Sum_probs=121.1
Q ss_pred CCcccccChhhhh--hhhhhhhccceeeccchhhhHHHHHHHHHHHHHhcCCCCCCCchHHHHHHhh-HHHH---HH---
Q 008635 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGT-SATL---WI--- 259 (558)
Q Consensus 189 Ga~~~~l~p~~k~--~~~~~ee~~k~i~~~~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai~~g~-~~~L---~l--- 259 (558)
|+|..|++|+... .+.+|.+.+ ++.|+-.++| .. ++.+.+.-.+++.. |..--.+.+.. .... .+
T Consensus 184 ~~c~~c~~~~~~~~~~~~~~~~~g--v~g~~~~~~g-~~-~a~e~ik~l~g~~~--~~~~~l~~~d~~~~~~~~~~~~~~ 257 (392)
T PRK07878 184 GLNYRDLYPEPPPPGMVPSCAEGG--VLGVLCASIG-SI-MGTEAIKLITGIGE--PLLGRLMVYDALEMTYRTIKIRKD 257 (392)
T ss_pred CCeeeeecCCCCCccCCCCCccCC--ccchHHHHHH-HH-HHHHHHHHHhCCCC--CCcCcEEEEECCCCceeeEeeccC
Confidence 6788999886433 557899988 8888666666 33 66676666666421 21000000000 0000 00
Q ss_pred ----------HHHHH-H-------hcCCCcccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCch
Q 008635 260 ----------FYWWW-T-------YGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLP 321 (558)
Q Consensus 260 ----------~Yap~-~-------~~G~~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~ 321 (558)
.|-.+ . .......|+++++.++++++++.+|||||+++||+.+|||||+ |+|+.
T Consensus 258 ~~C~~~~~~~~~~~~c~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAi--------nip~~ 329 (392)
T PRK07878 258 PSTPKITELIDYEAFCGVVSDEAQQAAAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQ--------LIPKS 329 (392)
T ss_pred CCCCcccccccchhhcccccccccccCCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCE--------EcChH
Confidence 01000 0 0011236899999999864456799999999999999999999 99988
Q ss_pred hhhh--hHHhhhcCCccchhhHHHHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCc
Q 008635 322 EVGG--SVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLR 399 (558)
Q Consensus 322 eL~~--~l~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLP 399 (558)
++.. .+.+ ++++++||+||++|.||..+++.|++.||++|++|+||+.+|++...|
T Consensus 330 ~l~~~~~~~~----------------------l~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~ 387 (392)
T PRK07878 330 EILSGEALAK----------------------LPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQVDP 387 (392)
T ss_pred HhcchhHHhh----------------------CCCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence 7754 2221 347899999999999999999999999999999999999999987654
No 41
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.58 E-value=5.1e-15 Score=166.08 Aligned_cols=119 Identities=18% Similarity=0.208 Sum_probs=90.1
Q ss_pred cccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhh---HHhhhcCCccchhhHHHHHHh
Q 008635 271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS---VKKLLRGGRELDDTLTAAVIR 347 (558)
Q Consensus 271 ~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~---l~eL~~~~~~L~~~l~aa~i~ 347 (558)
..|+++++.+++. +++++|||+|++++|..||||||+ ++|++.+... .....+...+++. .+.
T Consensus 9 ~lIs~~eL~~~l~-~~~vvIIDvR~~~eY~~GHIPGAv--------~i~~~~~~~~~~~~~~~lp~~~~l~~-----~l~ 74 (610)
T PRK09629 9 LVIEPNDLLERLD-APELILVDLTSSARYEAGHIRGAR--------FVDPKRTQLGKPPAPGLLPDTADLEQ-----LFG 74 (610)
T ss_pred ceecHHHHHHHhc-CCCEEEEECCChHHHHhCCCCCcE--------EcChhHhhccCCCCCCCCCCHHHHHH-----HHH
Confidence 4699999999994 567999999999999999999999 7775432110 0001111111111 222
Q ss_pred hhhccCCCcEEEEEeCCCh-hHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCC
Q 008635 348 NLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELK 404 (558)
Q Consensus 348 ~Lkgl~kdk~VVVyC~sG~-RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~ 404 (558)
. .+++++++||+||+.|. ++.+++|+|+.+||++|++|+||+.+|+.+|+|++...
T Consensus 75 ~-lGI~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~ 131 (610)
T PRK09629 75 E-LGHNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDV 131 (610)
T ss_pred H-cCCCCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCC
Confidence 2 24568999999999875 88899999999999999999999999999999997754
No 42
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.57 E-value=7.2e-15 Score=152.95 Aligned_cols=100 Identities=18% Similarity=0.206 Sum_probs=84.5
Q ss_pred cccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhh
Q 008635 271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 350 (558)
Q Consensus 271 ~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lk 350 (558)
..++++++.+++. +++.+|||||++.||+.||||||+ |+|+.++++....+... .
T Consensus 112 ~~is~~el~~~l~-~~~~vlIDVR~~~E~~~GhI~GAi--------~ip~~~~~~~~~~l~~~----------------~ 166 (314)
T PRK00142 112 TYLKPKEVNELLD-DPDVVFIDMRNDYEYEIGHFENAI--------EPDIETFREFPPWVEEN----------------L 166 (314)
T ss_pred cccCHHHHHHHhc-CCCeEEEECCCHHHHhcCcCCCCE--------eCCHHHhhhhHHHHHHh----------------c
Confidence 4699999999984 567899999999999999999999 99998877543322110 1
Q ss_pred ccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHH
Q 008635 351 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVK 395 (558)
Q Consensus 351 gl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWka 395 (558)
...++++||+||.+|.|+..++..|+++||++|++|+||+.+|..
T Consensus 167 ~~~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~ 211 (314)
T PRK00142 167 DPLKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIITYGE 211 (314)
T ss_pred CCCCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHHHHH
Confidence 123789999999999999999999999999999999999999976
No 43
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.56 E-value=3.4e-15 Score=152.20 Aligned_cols=113 Identities=20% Similarity=0.213 Sum_probs=83.9
Q ss_pred CHHHHHHHHhCCCCcEEEEeCChhhhh-----------hcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHH
Q 008635 274 SPKSTLELLRGKENAVLIDVRHEDLRE-----------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLT 342 (558)
Q Consensus 274 Sp~El~elL~~~e~avLIDVRsp~Ef~-----------~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~ 342 (558)
+.+++...+ +.++.+|||+|+++||. .||||||+ |+|..++... .. .+...+++..+
T Consensus 156 ~~~~v~~~~-~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~--------~i~~~~~~~~-~~-~~~~~~l~~~~- 223 (281)
T PRK11493 156 RLTDVLLAS-HEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGAL--------NVPWTELVRE-GE-LKTTDELDAIF- 223 (281)
T ss_pred cHHHHHHhh-cCCCcEEEeCCCccceeeeccCCCCCcccccCCCcC--------CCCHHHhcCC-CC-cCCHHHHHHHH-
Confidence 334444444 33468999999999995 69999999 9997765431 01 11111111111
Q ss_pred HHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHH-cCCceecC
Q 008635 343 AAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVK-EGLRIKEL 403 (558)
Q Consensus 343 aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWka-AGLPV~~~ 403 (558)
.-.+++++++||+||++|.||..+++.|+.+||++|++|+|||..|.. .++|++.+
T Consensus 224 -----~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~ 280 (281)
T PRK11493 224 -----FGRGVSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPA 280 (281)
T ss_pred -----HhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence 123567889999999999999999999999999999999999999998 79998764
No 44
>PRK07411 hypothetical protein; Validated
Probab=99.54 E-value=1.9e-14 Score=153.66 Aligned_cols=182 Identities=20% Similarity=0.196 Sum_probs=119.5
Q ss_pred CCcccccChhhhh--hhhhhhhccceeeccchhhhHHHHHHHHHHHHHhcCCCCC--CCchHHHH--------HH-----
Q 008635 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFDPN--DPIVPFVV--------FL----- 251 (558)
Q Consensus 189 Ga~~~~l~p~~k~--~~~~~ee~~k~i~~~~G~iLgaQ~~vg~~gvdkridf~~~--~PVLa~ai--------~~----- 251 (558)
++|..|++|+... .+.+|.+.+ |+.|+-.+.| .+ ++.+.+.-.+|+... ..++.+-. .+
T Consensus 176 ~~c~~c~~~~~~~~~~~~~c~~~g--vlg~~~~~~g-~~-~a~eaik~l~g~~~~l~~~l~~~d~~~~~~~~~~~~~~~~ 251 (390)
T PRK07411 176 GPNYRDLYPEPPPPGMVPSCAEGG--VLGILPGIIG-VI-QATETIKIILGAGNTLSGRLLLYNALDMKFRELKLRPNPE 251 (390)
T ss_pred CCChHHhcCCCCCcccCCCCccCC--cCcchHHHHH-HH-HHHHHHHHHcCCCCCCCCeEEEEECCCCceeEEeccCCCC
Confidence 5799999987533 566899999 8888777777 33 556666655553210 11110000 00
Q ss_pred ----hhHHHHHHH-HHHH------HhcCCCcccCHHHHHHHHhCCC-CcEEEEeCChhhhhhcCCCcccccccccccCCC
Q 008635 252 ----GTSATLWIF-YWWW------TYGGYSGDLSPKSTLELLRGKE-NAVLIDVRHEDLRERDGIPDLRRGARFRYASVY 319 (558)
Q Consensus 252 ----g~~~~L~l~-Yap~------~~~G~~~~ISp~El~elL~~~e-~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIP 319 (558)
........+ ..++ ........|+++++.++++.++ +.+|||||+++||+.+|||||+ |+|
T Consensus 252 c~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAi--------niP 323 (390)
T PRK07411 252 RPVIEKLIDYEQFCGIPQAKAAEAAQKAEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSV--------LVP 323 (390)
T ss_pred CCccccccchhhhcccccccccccccccccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCE--------Ecc
Confidence 000000000 0000 0012234699999999986433 5799999999999999999999 999
Q ss_pred chhhhhhHHhhhcCCccchhhHHHHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCc
Q 008635 320 LPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLR 399 (558)
Q Consensus 320 L~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLP 399 (558)
+.++..... .. .+..+.++++||+||++|.||..+++.|+++||+ ++.|.||+.+|++...|
T Consensus 324 ~~~l~~~~~-~~----------------~l~~l~~d~~IVvyC~~G~RS~~aa~~L~~~G~~-~~~l~GG~~~W~~~~~p 385 (390)
T PRK07411 324 LPDIENGPG-VE----------------KVKELLNGHRLIAHCKMGGRSAKALGILKEAGIE-GTNVKGGITAWSREVDP 385 (390)
T ss_pred HHHhhcccc-hH----------------HHhhcCCCCeEEEECCCCHHHHHHHHHHHHcCCC-eEEecchHHHHHHhcCC
Confidence 887754210 00 0011236889999999999999999999999997 46899999999987665
Q ss_pred e
Q 008635 400 I 400 (558)
Q Consensus 400 V 400 (558)
.
T Consensus 386 ~ 386 (390)
T PRK07411 386 S 386 (390)
T ss_pred C
Confidence 4
No 45
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.54 E-value=7.6e-15 Score=152.73 Aligned_cols=114 Identities=17% Similarity=0.207 Sum_probs=85.9
Q ss_pred cCHHHHHHHHhCCCCcEEEEeCChhhh-----------hhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhH
Q 008635 273 LSPKSTLELLRGKENAVLIDVRHEDLR-----------ERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTL 341 (558)
Q Consensus 273 ISp~El~elL~~~e~avLIDVRsp~Ef-----------~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l 341 (558)
++.+++.+.+. +++.+|||+|++.|| ..||||||+ |+|+.++...-. ..+...+++..+
T Consensus 192 ~~~~~v~~~~~-~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAv--------nip~~~~~~~~~-~~~~~~el~~~~ 261 (320)
T PLN02723 192 WTLEQVKKNIE-DKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSK--------CVPFPQMLDSSQ-TLLPAEELKKRF 261 (320)
T ss_pred ecHHHHHHhhc-CCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCc--------ccCHHHhcCCCC-CCCCHHHHHHHH
Confidence 57778887773 456889999999998 469999999 999866543211 112212222111
Q ss_pred HHHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHc-CCceec
Q 008635 342 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKE-GLRIKE 402 (558)
Q Consensus 342 ~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaA-GLPV~~ 402 (558)
.. .+++++++||+||++|.||..+++.|+.+||++|++|+|||..|... .+|++.
T Consensus 262 ~~------~gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~ 317 (320)
T PLN02723 262 EQ------EGISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVAT 317 (320)
T ss_pred Hh------cCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccC
Confidence 11 24668999999999999999999999999999999999999999874 678765
No 46
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.52 E-value=1.1e-14 Score=154.61 Aligned_cols=166 Identities=18% Similarity=0.222 Sum_probs=111.4
Q ss_pred CCcccccChhhhh--hhhhhhhccceeeccchhhhHHHHHHHHHHHHHhcCCCCC--CCchHHHHHHhh-HHHHHHHHHH
Q 008635 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFDPN--DPIVPFVVFLGT-SATLWIFYWW 263 (558)
Q Consensus 189 Ga~~~~l~p~~k~--~~~~~ee~~k~i~~~~G~iLgaQ~~vg~~gvdkridf~~~--~PVLa~ai~~g~-~~~L~l~Yap 263 (558)
++|..|++|+... .+.+|.+.+ ++.|+-.+.| .. ++.+.+.-..|+.+. ..++. +.. ...+...-+.
T Consensus 182 ~~~~~~l~~~~~~~~~~~~c~~~g--vlg~~~~~ig-~~-~a~eaik~l~g~g~~l~g~ll~----~d~~~~~~~~~~~~ 253 (370)
T PRK05600 182 GVGLRDLFPEQPSGDSIPDCATAG--VLGATTAVIG-AL-MATEAIKFLTGIGDVQPGTVLS----YDALTATTRSFRVG 253 (370)
T ss_pred CCCcHhhCCCCCccccCCCCccCC--cchhHHHHHH-HH-HHHHHHHHHhCCCCCCcCcEEE----EECCCCEEEEEEec
Confidence 5688999987543 456788888 7888777777 34 667777666664211 11211 000 0000000000
Q ss_pred --------HHh-cCC-CcccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCC---cccccccccccCCCchhhhhhH---
Q 008635 264 --------WTY-GGY-SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIP---DLRRGARFRYASVYLPEVGGSV--- 327 (558)
Q Consensus 264 --------~~~-~G~-~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIP---GAv~a~~~~~~nIPL~eL~~~l--- 327 (558)
..+ ..| ...++++++.+++. +++++|||||+++||+.+||| ||+ |+|+.++++..
T Consensus 254 ~~~~c~~~~~~~~~~~~~~~~~~el~~~l~-~~~~~lIDVR~~~E~~~ghI~~~~gAi--------nIPl~~l~~~~~~~ 324 (370)
T PRK05600 254 ADPARPLVTRLRPSYEAARTDTTSLIDATL-NGSATLLDVREPHEVLLKDLPEGGASL--------KLPLSAITDDADIL 324 (370)
T ss_pred CCCCCCccccccCcchhcccCHHHHHHHHh-cCCeEEEECCCHHHhhhccCCCCCccE--------eCcHHHhhcchhhh
Confidence 000 011 12589999999985 456799999999999999998 588 99999886532
Q ss_pred HhhhcCCccchhhHHHHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCc-EEEEcccHH
Q 008635 328 KKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMV-TFLVQGGFQ 391 (558)
Q Consensus 328 ~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~Gfkn-Vy~LdGG~~ 391 (558)
.++. .++++ +|||||++|.||+.|++.|+++||++ |++|+||+.
T Consensus 325 ~~l~-------------------~~~~~-~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 325 HALS-------------------PIDGD-NVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred hhcc-------------------ccCCC-cEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 1111 12244 99999999999999999999999986 999999985
No 47
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.50 E-value=1.2e-13 Score=141.89 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=88.0
Q ss_pred cCHHHHHHHHhCCCCcEEEEeCChhhhhh----------cCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHH
Q 008635 273 LSPKSTLELLRGKENAVLIDVRHEDLRER----------DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLT 342 (558)
Q Consensus 273 ISp~El~elL~~~e~avLIDVRsp~Ef~~----------GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~ 342 (558)
.+..+....+ +....+|||+|++++|.. ||||||+ |+|..++.+.- .+.+. .-.
T Consensus 158 ~~~~~~~~~~-~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAi--------Nipw~~~~~~~-~~~~~------~~~ 221 (285)
T COG2897 158 VDATLVADAL-EVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAI--------NIPWTDLVDDG-GLFKS------PEE 221 (285)
T ss_pred CCHHHHHHHh-cCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCc--------CcCHHHHhcCC-CccCc------HHH
Confidence 4556666666 356778999999999987 9999999 99988776521 12211 111
Q ss_pred HHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHH-cCCceecC
Q 008635 343 AAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVK-EGLRIKEL 403 (558)
Q Consensus 343 aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWka-AGLPV~~~ 403 (558)
...+....+++++++||+||.+|.||...+..|+.+|++++.+++|+|..|.+ .+.|++.+
T Consensus 222 ~~~l~~~~gi~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g 283 (285)
T COG2897 222 IARLYADAGIDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETG 283 (285)
T ss_pred HHHHHHhcCCCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccC
Confidence 12233345678999999999999999999999999999888999999999977 45577664
No 48
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.48 E-value=8.6e-14 Score=146.97 Aligned_cols=171 Identities=22% Similarity=0.288 Sum_probs=114.0
Q ss_pred CCcccccChhhhh--hhhhhhhccceeeccchhhhHHHHHHHHHHHHHhcCCCCCCCchHHHHHHhh-HHH---HHH---
Q 008635 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGT-SAT---LWI--- 259 (558)
Q Consensus 189 Ga~~~~l~p~~k~--~~~~~ee~~k~i~~~~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai~~g~-~~~---L~l--- 259 (558)
++|..|++|+... ...+|.+.+ ++.|+-.+.| .. ++.|.+.-.+|+. +|..--.+.+.. ... +.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~c~~~g--v~g~~~~~~g-~~-~a~e~ik~l~g~~--~~l~~~l~~~d~~~~~~~~~~~~~~ 239 (355)
T PRK05597 166 GPIYEDLFPTPPPPGSVPSCSQAG--VLGPVVGVVG-SA-MAMEALKLITGVG--TPLIGKLGYYDSLDGTWEYIPVVGN 239 (355)
T ss_pred CCCHHHhCCCCCCccCCCCccccC--cchhHHHHHH-HH-HHHHHHHHHhCCC--CcCcCeEEEEECCCCeEEEEeccCC
Confidence 3688999987643 456788888 8888667767 33 5666666666532 111000000000 000 000
Q ss_pred --H-----H-HHHH-h-cCCCcccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHh
Q 008635 260 --F-----Y-WWWT-Y-GGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKK 329 (558)
Q Consensus 260 --~-----Y-ap~~-~-~G~~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~e 329 (558)
+ | .+.. . .+....++++++.++. ++.+|||||+++||+.+|||||+ |+|+.++......
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~IIDVR~~~ef~~ghIpgAi--------nip~~~l~~~~~~ 308 (355)
T PRK05597 240 PAVLERVRGSTPVHGISGGFGEVLDVPRVSALP---DGVTLIDVREPSEFAAYSIPGAH--------NVPLSAIREGANP 308 (355)
T ss_pred CCCccccccccccccccCCcccccCHHHHHhcc---CCCEEEECCCHHHHccCcCCCCE--------EeCHHHhhhcccc
Confidence 0 0 0000 0 0222357778877543 46799999999999999999999 9998877553211
Q ss_pred hhcCCccchhhHHHHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHc
Q 008635 330 LLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKE 396 (558)
Q Consensus 330 L~~~~~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaA 396 (558)
. .++++++||+||+.|.||..+++.|+++||++|++|+||+.+|.++
T Consensus 309 ~--------------------~~~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~~ 355 (355)
T PRK05597 309 P--------------------SVSAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEGWLDS 355 (355)
T ss_pred c--------------------cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHHHhhC
Confidence 1 1236889999999999999999999999999999999999999763
No 49
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.47 E-value=1.1e-13 Score=142.30 Aligned_cols=120 Identities=20% Similarity=0.209 Sum_probs=88.9
Q ss_pred ccCHHHHHHHHhCCC-----CcEEEEeCCh--hhhhhcCCCcccccccccccCCCchhhhhhH---HhhhcCCccchhhH
Q 008635 272 DLSPKSTLELLRGKE-----NAVLIDVRHE--DLRERDGIPDLRRGARFRYASVYLPEVGGSV---KKLLRGGRELDDTL 341 (558)
Q Consensus 272 ~ISp~El~elL~~~e-----~avLIDVRsp--~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l---~eL~~~~~~L~~~l 341 (558)
.|+++++.+.+. ++ ++.+++++.. .+|..+|||||+ .++++.....- ....+++..+...+
T Consensus 12 lVs~~wl~~~l~-~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv--------~~d~~~~~~~~~~~~~~lp~~e~fa~~~ 82 (285)
T COG2897 12 LVSPDWLAENLD-DPAVVIVDARIILPDPDDAEEYLEGHIPGAV--------FFDWEADLSDPVPLPHMLPSPEQFAKLL 82 (285)
T ss_pred EEcHHHHHhhcc-ccccccCceEEEeCCcchHHHHHhccCCCCE--------ecCHHHhhcCCCCCCCCCCCHHHHHHHH
Confidence 589999988874 33 5666666655 899999999999 66655543322 12222323333333
Q ss_pred HHHHHhhhhccCCCcEEEEEeCCCh-hHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCCcc
Q 008635 342 TAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKSE 406 (558)
Q Consensus 342 ~aa~i~~Lkgl~kdk~VVVyC~sG~-RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~~~ 406 (558)
.+ .|+.+|.+||+|+..+. .+.+++|+|+.+|++||++|+||+.+|+++|+|++...+.
T Consensus 83 ~~------~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~ 142 (285)
T COG2897 83 GE------LGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPPE 142 (285)
T ss_pred HH------cCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCCC
Confidence 33 35568999999997665 8999999999999999999999999999999999976553
No 50
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.46 E-value=8.8e-14 Score=144.35 Aligned_cols=181 Identities=22% Similarity=0.273 Sum_probs=129.3
Q ss_pred ecCCCcccccChhhhh--hhhhhhhccceeeccchhhhHHHHHHHHHHHHHhcCCC-CCCCchHHHHHHhhHHHHH----
Q 008635 186 YYYGTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFD-PNDPIVPFVVFLGTSATLW---- 258 (558)
Q Consensus 186 y~pGa~~~~l~p~~k~--~~~~~ee~~k~i~~~~G~iLgaQ~~vg~~gvdkridf~-~~~PVLa~ai~~g~~~~L~---- 258 (558)
|--|+|++||||++++ ++.+|.|.+ |++|+-.++| . ++|+|.+.-..++. +-+|-+. ++-|..+.+.
T Consensus 201 y~~GPCYRClFP~Ppp~~~vt~C~dgG--VlGpv~GviG-~-mQALE~iKli~~~~~~~s~~ll--lfdg~~~~~r~irl 274 (427)
T KOG2017|consen 201 YNNGPCYRCLFPNPPPPEAVTNCADGG--VLGPVTGVIG-C-MQALETIKLIAGIGESLSGRLL--LFDGLSGHFRTIRL 274 (427)
T ss_pred cCCCceeeecCCCCcChHHhcccccCc--eeecchhhhh-H-HHHHHHHHHHHccCccCCcceE--EEecccceeEEEEe
Confidence 4468999999999999 999999999 9999777788 3 47888777666643 1122221 1112221100
Q ss_pred -------------------HHHHHH-----------HhcCCCcccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCccc
Q 008635 259 -------------------IFYWWW-----------TYGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLR 308 (558)
Q Consensus 259 -------------------l~Yap~-----------~~~G~~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv 308 (558)
..|-++ +.-....+|+..|+++++++.+..+|||||++.||+..|+|+|+
T Consensus 275 R~r~~~C~~Cg~n~tit~~~dYe~fCg~~~~~~~~l~lL~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~av 354 (427)
T KOG2017|consen 275 RSRRPKCAVCGKNPTITSLIDYELFCGSSATDKCPLKLLEPDERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAV 354 (427)
T ss_pred ccCCCCCcccCCCCccCcccchhcccCCccccccchhcCChhhcccHHHHHHHHhcCCCeEEEeccCcceEEEEeccccc
Confidence 011110 11112336899999999976678999999999999999999999
Q ss_pred ccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCC-CcEEEEc
Q 008635 309 RGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGV-MVTFLVQ 387 (558)
Q Consensus 309 ~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~Gf-knVy~Ld 387 (558)
|||+.+++.+..+-... .+. ...++|+|+|+.|..|.+|+|+|+...+ .+|+-+-
T Consensus 355 --------NIPL~~l~~~~~~~~~~--~~~--------------~~~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~vrDvi 410 (427)
T KOG2017|consen 355 --------NIPLKELRSRSGKKLQG--DLN--------------TESKDIFVICRRGNDSQRAVRILREKFPDSSVRDVI 410 (427)
T ss_pred --------ccchhhhhhhhhhhhcc--ccc--------------ccCCCEEEEeCCCCchHHHHHHHHhhCCchhhhhhh
Confidence 99999988765421110 110 1456799999999999999999997665 3688889
Q ss_pred ccHHHHHHc
Q 008635 388 GGFQSWVKE 396 (558)
Q Consensus 388 GG~~aWkaA 396 (558)
||+.+|...
T Consensus 411 gGl~~w~~~ 419 (427)
T KOG2017|consen 411 GGLKAWAAK 419 (427)
T ss_pred hHHHHHHHh
Confidence 999999764
No 51
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.46 E-value=1.4e-13 Score=143.28 Aligned_cols=108 Identities=19% Similarity=0.197 Sum_probs=73.4
Q ss_pred CcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhh--HHhhhcCC-----ccchhhHHHH----HHhhh-hccCC
Q 008635 287 NAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS--VKKLLRGG-----RELDDTLTAA----VIRNL-KIVQD 354 (558)
Q Consensus 287 ~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~--l~eL~~~~-----~~L~~~l~aa----~i~~L-kgl~k 354 (558)
..+|||||+|.||..||||||+ |+|+.+..++ ++.+.+.. ..++..+... .+..+ +..++
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAi--------niPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~ 73 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAI--------NLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADG 73 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCE--------ecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCC
Confidence 4589999999999999999999 9998543222 11111100 0000001100 11111 12234
Q ss_pred CcEEEEEeC-CChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecC
Q 008635 355 RSKVIVMDA-DGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKEL 403 (558)
Q Consensus 355 dk~VVVyC~-sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~ 403 (558)
+++||+||. +|.||..+++.|+.+|| +|++|+||+.+|+..+.+....
T Consensus 74 ~~~vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~~~ 122 (311)
T TIGR03167 74 PPQPLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQLEE 122 (311)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhhhc
Confidence 556999995 78999999999999999 6999999999999998877653
No 52
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.46 E-value=4.1e-13 Score=121.65 Aligned_cols=113 Identities=20% Similarity=0.227 Sum_probs=77.0
Q ss_pred ccCHHHHHHHHhCC-CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhH-HHHHHhhh
Q 008635 272 DLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTL-TAAVIRNL 349 (558)
Q Consensus 272 ~ISp~El~elL~~~-e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l-~aa~i~~L 349 (558)
.|+++++.++++.+ ++.+|||||++.+|..+|||||+ ++|++.+..+- ...+...+...+ .......+
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai--------~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l 70 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAV--------NVCCPTILRRR--LQGGKILLQQLLSCPEDRDRL 70 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcE--------ecChHHHHHHh--hcccchhhhhhcCCHHHHHHH
Confidence 37899999999643 57899999999999999999999 99987643211 100000000000 00011112
Q ss_pred hccCCCcEEEEEeCCChh---------HHHHHHHHHH--cCCCcEEEEcccHHHHHH
Q 008635 350 KIVQDRSKVIVMDADGTR---------SKGIARSLRK--LGVMVTFLVQGGFQSWVK 395 (558)
Q Consensus 350 kgl~kdk~VVVyC~sG~R---------S~~AA~~L~~--~GfknVy~LdGG~~aWka 395 (558)
... ++++|||||..+.+ ++.+++.|.. .|+.+|++|+|||.+|++
T Consensus 71 ~~~-~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~ 126 (132)
T cd01446 71 RRG-ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSS 126 (132)
T ss_pred hcC-CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHh
Confidence 222 57899999998875 6677777777 477899999999999976
No 53
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.45 E-value=2.3e-13 Score=143.41 Aligned_cols=118 Identities=16% Similarity=0.178 Sum_probs=80.2
Q ss_pred CHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhh--HHhhhcCC----------ccchhhH
Q 008635 274 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS--VKKLLRGG----------RELDDTL 341 (558)
Q Consensus 274 Sp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~--l~eL~~~~----------~~L~~~l 341 (558)
...++.+++. ++.+|||||+|.||..||||||+ |+|+.+..++ ++.+.+.. ......+
T Consensus 4 ~~~~~~~~~~--~~~~lIDVRsp~Ef~~ghIpgAi--------niPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l 73 (345)
T PRK11784 4 DAQDFRALFL--NDTPLIDVRSPIEFAEGHIPGAI--------NLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNI 73 (345)
T ss_pred cHHHHHHHHh--CCCEEEECCCHHHHhcCCCCCee--------eCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhH
Confidence 4566776653 57899999999999999999999 9998543321 11111000 0000011
Q ss_pred HHHHHhhhhcc-CCCcEEEEEe-CCChhHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceec
Q 008635 342 TAAVIRNLKIV-QDRSKVIVMD-ADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKE 402 (558)
Q Consensus 342 ~aa~i~~Lkgl-~kdk~VVVyC-~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~ 402 (558)
.......+... +++++||+|| ++|.||..+++.|+.+|| +|++|+||+.+|+..+++...
T Consensus 74 ~~~~~~~~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~~~ 135 (345)
T PRK11784 74 AAHREEAWADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDTLE 135 (345)
T ss_pred HHHHHHHHHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHHHh
Confidence 11111111122 2688999999 578999999999999999 699999999999988775544
No 54
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.45 E-value=7.9e-14 Score=156.56 Aligned_cols=116 Identities=15% Similarity=0.101 Sum_probs=87.1
Q ss_pred ccCHHHHHHHHhCCCCcEEEEeCChhhhh--------hcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHH
Q 008635 272 DLSPKSTLELLRGKENAVLIDVRHEDLRE--------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTA 343 (558)
Q Consensus 272 ~ISp~El~elL~~~e~avLIDVRsp~Ef~--------~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~a 343 (558)
.++.+++.+.+ ++++.+|||+|+++||. .||||||+ |+|..++...-..+ +...++...+
T Consensus 148 ~v~~e~v~~~l-~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAv--------nip~~~~~~~~~~l-k~~~el~~~~-- 215 (610)
T PRK09629 148 TATREYLQSRL-GAADLAIWDARAPTEYSGEKVVAAKGGHIPGAV--------NFEWTAGMDKARNL-RIRQDMPEIL-- 215 (610)
T ss_pred cccHHHHHHhh-CCCCcEEEECCCccccCCcccccccCCCCCCCe--------ecCHHHhcCCCCCC-CCHHHHHHHH--
Confidence 36778888887 35678899999999994 69999999 89875542211111 1111111111
Q ss_pred HHHhhhhccCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHH-cCCceecC
Q 008635 344 AVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVK-EGLRIKEL 403 (558)
Q Consensus 344 a~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWka-AGLPV~~~ 403 (558)
.-.+++++++||+||++|.||..+++.|+.+||++|++|+|||.+|.+ .++|+++.
T Consensus 216 ----~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~ 272 (610)
T PRK09629 216 ----RDLGITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVP 272 (610)
T ss_pred ----HHcCCCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccC
Confidence 113567899999999999999999999999999999999999999987 47898874
No 55
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.11 E-value=1.2e-10 Score=127.77 Aligned_cols=81 Identities=20% Similarity=0.219 Sum_probs=67.6
Q ss_pred HHHHHHHhCCCCcEEEEeCChhhhhhcCCCc----ccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhc
Q 008635 276 KSTLELLRGKENAVLIDVRHEDLRERDGIPD----LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 351 (558)
Q Consensus 276 ~El~elL~~~e~avLIDVRsp~Ef~~GHIPG----Av~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkg 351 (558)
.+..+.+ .++++|||||+++||+.+|||| |+ |+|+.++...+..+
T Consensus 398 ~~~~~~~--~~~~~lIDVR~~~E~~~~hI~g~~~~a~--------niP~~~l~~~~~~l--------------------- 446 (482)
T PRK01269 398 VETVSEL--PPDDVIIDIRSPDEQEDKPLKLEGVEVK--------SLPFYKLSTQFGDL--------------------- 446 (482)
T ss_pred hHHHHhc--CCCCEEEECCCHHHHhcCCCCCCCceEE--------ECCHHHHHHHHhhc---------------------
Confidence 3344443 3678999999999999999999 88 99998887654332
Q ss_pred cCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcc
Q 008635 352 VQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQG 388 (558)
Q Consensus 352 l~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdG 388 (558)
+++++||+||++|.||..++..|+++||+||+++.+
T Consensus 447 -~~~~~iivyC~~G~rS~~aa~~L~~~G~~nv~~y~~ 482 (482)
T PRK01269 447 -DQSKTYLLYCDRGVMSRLQALYLREQGFSNVKVYRP 482 (482)
T ss_pred -CCCCeEEEECCCCHHHHHHHHHHHHcCCccEEecCC
Confidence 367899999999999999999999999999998753
No 56
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=98.94 E-value=9.5e-10 Score=113.00 Aligned_cols=99 Identities=19% Similarity=0.248 Sum_probs=82.9
Q ss_pred ccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhc
Q 008635 272 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 351 (558)
Q Consensus 272 ~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkg 351 (558)
-|+|+++.+++ .+++.++||+|..-||+-||..||+ +.+...|++........ +.
T Consensus 114 yl~p~~wn~~l-~D~~~vviDtRN~YE~~iG~F~gAv--------~p~~~tFrefP~~v~~~---------------~~- 168 (308)
T COG1054 114 YLSPKDWNELL-SDPDVVVIDTRNDYEVAIGHFEGAV--------EPDIETFREFPAWVEEN---------------LD- 168 (308)
T ss_pred ccCHHHHHHHh-cCCCeEEEEcCcceeEeeeeecCcc--------CCChhhhhhhHHHHHHH---------------HH-
Confidence 48999999999 4788999999999999999999999 88877777655433211 00
Q ss_pred cCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHH
Q 008635 352 VQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVK 395 (558)
Q Consensus 352 l~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWka 395 (558)
.-++++|+.||..|.|-..+...|...||++||.|+||+-.|-+
T Consensus 169 ~~~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e 212 (308)
T COG1054 169 LLKDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYLE 212 (308)
T ss_pred hccCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHHhh
Confidence 11578999999999999999999999999999999999988855
No 57
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.79 E-value=9.2e-09 Score=105.25 Aligned_cols=119 Identities=19% Similarity=0.252 Sum_probs=85.1
Q ss_pred ccCHHHHHHHHhCCCCcEEEEeC---------ChhhhhhcCCCcccccccccccCCCchhhhhh---HHhhhcCCccchh
Q 008635 272 DLSPKSTLELLRGKENAVLIDVR---------HEDLRERDGIPDLRRGARFRYASVYLPEVGGS---VKKLLRGGRELDD 339 (558)
Q Consensus 272 ~ISp~El~elL~~~e~avLIDVR---------sp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~---l~eL~~~~~~L~~ 339 (558)
.++++.+.+.+. +++.+|||.- ...||..-|||||. ++.++....+ .+...+..+.
T Consensus 6 iv~~~~v~~~~~-~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~--------~fdld~~~~~s~~~~~~lp~~e~--- 73 (286)
T KOG1529|consen 6 IVSVKWVMENLG-NHGLRILDASWYFPPLRRIAEFEFLERHIPGAS--------HFDLDIISYPSSPYRHMLPTAEH--- 73 (286)
T ss_pred ccChHHHHHhCc-CCCeEEEeeeeecCchhhhhhhhhhhccCCCce--------eeeccccccCCCcccccCccHHH---
Confidence 478888888884 4679999983 35678888999998 4444433211 1111111011
Q ss_pred hHHHHHHhhhhccCCCcEEEEEeC--CCh-hHHHHHHHHHHcCCCcEEEEcccHHHHHHcCCceecCCc
Q 008635 340 TLTAAVIRNLKIVQDRSKVIVMDA--DGT-RSKGIARSLRKLGVMVTFLVQGGFQSWVKEGLRIKELKS 405 (558)
Q Consensus 340 ~l~aa~i~~Lkgl~kdk~VVVyC~--sG~-RS~~AA~~L~~~GfknVy~LdGG~~aWkaAGLPV~~~~~ 405 (558)
++ .. -...+++++..+|||++ .|+ .|.+++|+++..||++|+.|+||+..|+++|+|+...+.
T Consensus 74 -Fa-~y-~~~lGi~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~~ 139 (286)
T KOG1529|consen 74 -FA-EY-ASRLGVDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSKV 139 (286)
T ss_pred -HH-HH-HHhcCCCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCccccccc
Confidence 11 11 11235678899999999 787 789999999999999999999999999999999988664
No 58
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=98.54 E-value=1.5e-07 Score=98.07 Aligned_cols=104 Identities=25% Similarity=0.341 Sum_probs=75.3
Q ss_pred CcccCHHHHHHHHhCC-----CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHH
Q 008635 270 SGDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAA 344 (558)
Q Consensus 270 ~~~ISp~El~elL~~~-----e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa 344 (558)
...|+++.+..++++. ...+|||+|-|-||..|||+||+ |++..+..+... +.++..
T Consensus 155 ~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgav--------nl~~~~~~~~~f-~~~~~~--------- 216 (325)
T KOG3772|consen 155 LKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAV--------NLYSKELLQDFF-LLKDGV--------- 216 (325)
T ss_pred ccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccce--------ecccHhhhhhhh-cccccc---------
Confidence 3579999999999641 23679999999999999999999 998665443321 111100
Q ss_pred HHhhhhccCCCcEEEEEeCCCh-hHHHHHHHHHH------------cCCCcEEEEcccHHHHHHc
Q 008635 345 VIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRK------------LGVMVTFLVQGGFQSWVKE 396 (558)
Q Consensus 345 ~i~~Lkgl~kdk~VVVyC~sG~-RS~~AA~~L~~------------~GfknVy~LdGG~~aWkaA 396 (558)
+.-.+...+||||-... |+..+|+.|+. +-|..+|+|+|||..|-..
T Consensus 217 -----~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 217 -----PSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred -----ccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 00013457899998654 99999999983 3456899999999999764
No 59
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.07 E-value=4e-06 Score=86.16 Aligned_cols=94 Identities=21% Similarity=0.222 Sum_probs=71.4
Q ss_pred CCcEEEEeCChhhhh-----------hcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhccCC
Q 008635 286 ENAVLIDVRHEDLRE-----------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQD 354 (558)
Q Consensus 286 e~avLIDVRsp~Ef~-----------~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkgl~k 354 (558)
.+...+|.|...+|. .|||||++ |+|++++-..-..+.+ ..++...+ .-+++..
T Consensus 171 ~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~--------n~P~~~~~~~~g~~k~-~edl~~~f------~~~~l~~ 235 (286)
T KOG1529|consen 171 KNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAI--------NFPFDEVLDPDGFIKP-AEDLKHLF------AQKGLKL 235 (286)
T ss_pred ccceeeeccccccccccCCCCcccCcCccCCCcc--------cCChHHhcccccccCC-HHHHHHHH------HhcCccc
Confidence 468899999988884 47999999 9998877543222211 12222222 1245556
Q ss_pred CcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHHHH
Q 008635 355 RSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSWVK 395 (558)
Q Consensus 355 dk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aWka 395 (558)
++|+|+-|..|..+...+-.|.+.| .+|.+++|+|..|..
T Consensus 236 ~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew~~ 275 (286)
T KOG1529|consen 236 SKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTEWAL 275 (286)
T ss_pred CCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHHHhh
Confidence 8999999999999999999999999 789999999999975
No 60
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.93 E-value=3.4e-06 Score=90.53 Aligned_cols=113 Identities=18% Similarity=0.180 Sum_probs=86.3
Q ss_pred hhhhHhhhHhHHHHHhhcCccccccCcccccccc---ccccccchhhHHhhhcccchhhhhcccccceeeeecCCCceee
Q 008635 110 SLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVY 186 (558)
Q Consensus 110 ~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~---~t~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y 186 (558)
....|.+|||++|+|++| ....+++.....+.. ...+++|++|+.+++.|+++ ........++..|
T Consensus 299 ~~~~A~~qg~~~a~ni~g-~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~----------~~~~~~~~~~~~~ 367 (444)
T PRK09564 299 LATTANKLGRMVGENLAG-RHVSFKGTLGSACIKVLDLEAARTGLTEEEAKKLGIDY----------KTVFIKDKNHTNY 367 (444)
T ss_pred chHHHHHHHHHHHHHhcC-CCCCCCCcccceEEEECCEEEEEecCCHHHHHHCCCCe----------EEEEEecCCCCCc
Confidence 566899999999999995 666788887776554 67999999999999999876 3333334567778
Q ss_pred cCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCchHHHHHHhhHH
Q 008635 187 YYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSA 255 (558)
Q Consensus 187 ~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai~~g~~~ 255 (558)
++|.....+ |+|++ .+|++||+|+ +|......+++ .++.++..+.+.
T Consensus 368 ~~~~~~~~~---------------klv~~~~~~~ilG~~~-~g~~~~~~~i~------~~~~~i~~~~~~ 415 (444)
T PRK09564 368 YPGQEDLYV---------------KLIYEADTKVILGGQI-IGKKGAVLRID------ALAVAIYAKLTT 415 (444)
T ss_pred CCCCceEEE---------------EEEEECCCCeEEeEEE-EcCccHHHHHH------HHHHHHHCCCCH
Confidence 899999999 99996 4999999999 77654555666 555555555443
No 61
>PRK07846 mycothione reductase; Reviewed
Probab=97.85 E-value=4.2e-06 Score=91.10 Aligned_cols=127 Identities=10% Similarity=-0.001 Sum_probs=93.6
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcc--ccccCcccccccc-ccccccchhhHHhhhcccchhhhhc
Q 008635 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVF--SSIDQTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRN 168 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~--~~~~~~~~~a~~~-~t~~stgl~e~~~~~~~~~~~~l~~ 168 (558)
.|+-++|+..- .....-|++|||++++|++++.. ....+.+.+.+.. ...+++|++|+.+++.|++|
T Consensus 294 ~IyA~GD~~~~-----~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~if~~p~ia~vGlte~~a~~~g~~~----- 363 (451)
T PRK07846 294 GVFALGDVSSP-----YQLKHVANHEARVVQHNLLHPDDLIASDHRFVPAAVFTHPQIASVGLTENEARAAGLDI----- 363 (451)
T ss_pred CEEEEeecCCC-----ccChhHHHHHHHHHHHHHcCCCCccccCCCCCCeEEECCCCcEeEeCCHHHHHhcCCCE-----
Confidence 45666666531 12356799999999999996422 2244567777665 78999999999999999876
Q ss_pred ccccceeeeecCCCceeec-CCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchH
Q 008635 169 TIVALEESMTNGASFVVYY-YGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVP 246 (558)
Q Consensus 169 ~~~~~~~~~~~~~~~~~y~-pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa 246 (558)
.+....-.++..|+ ++.....+ |+|++. +|++||+|+ +|.+ ...+|+ .++
T Consensus 364 -----~~~~~~~~~~~~~~~~~~~~g~~---------------Kli~d~~~~~ilG~~~-~g~~-a~e~i~------~~~ 415 (451)
T PRK07846 364 -----TVKVQNYGDVAYGWAMEDTTGFV---------------KLIADRDTGRLLGAHI-IGPQ-ASTLIQ------PLI 415 (451)
T ss_pred -----EEEEEecCcchhhhhCCCCceEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HHH
Confidence 55555555655554 78888888 999964 999999999 8854 478888 777
Q ss_pred HHHHHhhHHH
Q 008635 247 FVVFLGTSAT 256 (558)
Q Consensus 247 ~ai~~g~~~~ 256 (558)
.++..+.+..
T Consensus 416 ~ai~~~~t~~ 425 (451)
T PRK07846 416 QAMSFGLDAR 425 (451)
T ss_pred HHHHcCCCHH
Confidence 7777776654
No 62
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.85 E-value=3.7e-06 Score=91.08 Aligned_cols=127 Identities=8% Similarity=0.003 Sum_probs=90.8
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcccccc-Ccccccccc-ccccccchhhHHhhhcc-cchhhhhc
Q 008635 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSID-QTGGSAGSK-LTNFSTDLKEASSKATV-AAVDVLRN 168 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~-~~~~~a~~~-~t~~stgl~e~~~~~~~-~~~~~l~~ 168 (558)
.|+-++|+... ...+..|++|||++++|++|+....++ +++.+.+.. ...+++|++|+.+++.+ +++.+.
T Consensus 295 ~IyA~GD~~~~-----~~l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~if~~p~ia~vG~te~~a~~~~~~~~~~~-- 367 (446)
T TIGR01424 295 SIYAVGDVTDR-----INLTPVAIMEATCFANTEFGNNPTKFDHDLIATAVFSQPPLGTVGLTEEEAREKFTGDILVY-- 367 (446)
T ss_pred CEEEeeccCCC-----ccchhHHHHHHHHHHHHHhcCCCCccCcCCCCeEEeCCchhEEEECCHHHHHhhcCCCEEEE--
Confidence 45666676521 235668999999999999965444455 678888877 47999999999999984 665111
Q ss_pred ccccceeeeecCCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchHH
Q 008635 169 TIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVPF 247 (558)
Q Consensus 169 ~~~~~~~~~~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ 247 (558)
...+ ...+..|++|.....+ |+|+++ +|++||+|+ +|.+ ...+|+ .+++
T Consensus 368 -----~~~~--~~~~~~~~~~~~~g~~---------------kli~d~~~~~ilG~~~-~g~~-a~e~i~------~~~~ 417 (446)
T TIGR01424 368 -----RAGF--RPMKNTFSGRQEKTLM---------------KLVVDEKDDKVLGAHM-VGPD-AAEIIQ------GIAI 417 (446)
T ss_pred -----EEec--CchHhHhhcCCCceEE---------------EEEEeCCCCEEEEEEE-ECCC-HHHHHH------HHHH
Confidence 1111 2345567888888888 999965 999999999 8854 677777 6666
Q ss_pred HHHHhhHH
Q 008635 248 VVFLGTSA 255 (558)
Q Consensus 248 ai~~g~~~ 255 (558)
++..+.+.
T Consensus 418 ai~~~~t~ 425 (446)
T TIGR01424 418 ALKMGATK 425 (446)
T ss_pred HHHcCCCH
Confidence 66655554
No 63
>PRK06370 mercuric reductase; Validated
Probab=97.83 E-value=4.6e-06 Score=90.58 Aligned_cols=126 Identities=6% Similarity=-0.017 Sum_probs=87.8
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccccc--ccccccchhhHHhhhcccchhhhhcc
Q 008635 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK--LTNFSTDLKEASSKATVAAVDVLRNT 169 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~--~t~~stgl~e~~~~~~~~~~~~l~~~ 169 (558)
.|+-++|+.. . .....-|.+|||++|+|++++....++...-..+.- ...+++|++|+.+++.|++|
T Consensus 303 ~IyAiGD~~~-~----~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~ia~vG~te~~a~~~g~~~------ 371 (463)
T PRK06370 303 GIYAAGDCNG-R----GAFTHTAYNDARIVAANLLDGGRRKVSDRIVPYATYTDPPLARVGMTEAEARKSGRRV------ 371 (463)
T ss_pred CEEEeeecCC-C----cccHHHHHHHHHHHHHHHhCCCCCCcccccCCeEEEcCCCcEeeeCCHHHHHHcCCCe------
Confidence 3555666542 1 123568999999999999965455566544333333 56899999999999999876
Q ss_pred cccceeeeecCCCcee-ecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCchHH
Q 008635 170 IVALEESMTNGASFVV-YYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIVPF 247 (558)
Q Consensus 170 ~~~~~~~~~~~~~~~~-y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ 247 (558)
++....-.++.. |++|.....+ |+|++ .+|++||+|+ +|.+ ...+|+ .++.
T Consensus 372 ----~~~~~~~~~~~~~~~~~~~~g~~---------------kli~d~~~~~ilG~~~-~g~~-a~e~i~------~~~~ 424 (463)
T PRK06370 372 ----LVGTRPMTRVGRAVEKGETQGFM---------------KVVVDADTDRILGATI-LGVH-GDEMIH------EILD 424 (463)
T ss_pred ----EEEEEecCcchhHHhcCCCCEEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HHHH
Confidence 444443334333 4488888888 99996 4999999999 8865 466777 6666
Q ss_pred HHHHhhHH
Q 008635 248 VVFLGTSA 255 (558)
Q Consensus 248 ai~~g~~~ 255 (558)
++..+.+.
T Consensus 425 ai~~~~t~ 432 (463)
T PRK06370 425 AMYAGAPY 432 (463)
T ss_pred HHHCCCCH
Confidence 66665554
No 64
>PRK14727 putative mercuric reductase; Provisional
Probab=97.77 E-value=7.1e-06 Score=89.80 Aligned_cols=126 Identities=10% Similarity=-0.030 Sum_probs=94.3
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccccc--ccccccchhhHHhhhcccchhhhhcc
Q 008635 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK--LTNFSTDLKEASSKATVAAVDVLRNT 169 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~--~t~~stgl~e~~~~~~~~~~~~l~~~ 169 (558)
.|+-++|+... ...+.-|..|||.+|+|++| ....+++.....+.- ...+++|++|+.+++.|++|
T Consensus 315 ~IyA~GD~~~~-----~~~~~~A~~~G~~aa~~i~g-~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~------ 382 (479)
T PRK14727 315 DIYAAGDCSDL-----PQFVYVAAAAGSRAGINMTG-GNATLDLSAMPAVIFTDPQVATVGLSEAKAHLSGIET------ 382 (479)
T ss_pred CEEEeeecCCc-----chhhhHHHHHHHHHHHHHcC-CCcccccccCCcEEEecCceeeeeCCHHHHHHcCCce------
Confidence 46666776531 23456788899999999994 667788777766554 67999999999999999876
Q ss_pred cccceeeeecCCCceeecCC-CcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCchHH
Q 008635 170 IVALEESMTNGASFVVYYYG-TTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIVPF 247 (558)
Q Consensus 170 ~~~~~~~~~~~~~~~~y~pG-a~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ 247 (558)
.+......++..|+++ .....+ |+|++ .+|++||+|+ +|.+ ...+|+ .++.
T Consensus 383 ----~~~~~~~~~~~~~~~~~~~~g~~---------------Kli~d~~~~~ilG~~~-~g~~-a~e~i~------~~~~ 435 (479)
T PRK14727 383 ----ISRVLTMENVPRALANFETDGFI---------------KLVAEEGTRKLIGAQI-LAHE-GGELIQ------SAAL 435 (479)
T ss_pred ----EEEEEEcccCchhhhcCCCCeEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HHHH
Confidence 5555666777777877 456777 99996 5999999999 8865 477788 7666
Q ss_pred HHHHhhHHH
Q 008635 248 VVFLGTSAT 256 (558)
Q Consensus 248 ai~~g~~~~ 256 (558)
++..+.+..
T Consensus 436 ai~~~~t~~ 444 (479)
T PRK14727 436 AIHNRMTVE 444 (479)
T ss_pred HHHcCCCHH
Confidence 666665543
No 65
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.71 E-value=1.3e-05 Score=85.91 Aligned_cols=112 Identities=19% Similarity=0.205 Sum_probs=84.9
Q ss_pred hhhhHhhhHhHHHHHhhcCccccccCcccccccc---ccccccchhhHHhhhcccchhhhhcccccceeeeecCCCceee
Q 008635 110 SLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVY 186 (558)
Q Consensus 110 ~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~---~t~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y 186 (558)
....|.+|||++|+|+.| ....+++........ ...++.|++|+.+++.|++| +.......++..+
T Consensus 286 ~~~~A~~~g~~~a~ni~g-~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~----------~~~~~~~~~~~~~ 354 (427)
T TIGR03385 286 LAWGANKMGRIAGENIAG-NDIEFKGVLGTNITKFFDLTIASTGVTENEAKKLNIDY----------KTVFVKAKTHANY 354 (427)
T ss_pred chHHHHHHHHHHHHHhcC-CCCCCCCcceeeEEEEcCeEEEEecCCHHHHHHCCCCe----------EEEEEecCCCCCc
Confidence 567899999999999995 567787766554444 77999999999999999876 4444555567777
Q ss_pred cCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchHHHHHHhhH
Q 008635 187 YYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTS 254 (558)
Q Consensus 187 ~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai~~g~~ 254 (558)
++|.....+ |+|+++ +|++||+|+ +|.++....+. .++.++..+.+
T Consensus 355 ~~~~~~g~~---------------kli~~~~~~~ilG~~~-~g~~~a~e~i~------~~~~ai~~~~t 401 (427)
T TIGR03385 355 YPGNSPLHL---------------KLIYEKDTRRILGAQA-VGKEGADKRID------VLAAAIMAGLT 401 (427)
T ss_pred CCCCceEEE---------------EEEEECCCCeEEEEEE-EccccHHHHHH------HHHHHHHCCCC
Confidence 889888899 999965 899999999 77765555566 55544444443
No 66
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.66 E-value=1.7e-05 Score=85.87 Aligned_cols=113 Identities=13% Similarity=0.114 Sum_probs=83.2
Q ss_pred hhhhHhhhHhHHHHHhhcCccccccCcccccccc---ccccccchhhHHhhhcccchhhhhcccccceeeeecCCCceee
Q 008635 110 SLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVY 186 (558)
Q Consensus 110 ~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~---~t~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y 186 (558)
....|.+||+.+++|++|.....+.+........ ...+++|++|+.+++.++ +.......++..|
T Consensus 294 la~~A~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~~~------------~~~~~~~~~~~~~ 361 (438)
T PRK13512 294 LAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDY------------KMVEVTQGAHANY 361 (438)
T ss_pred cchHHHHHHHHHHHHhcCCCccccCCcccceEEEEcCceEEeecCCHHHHccCCc------------EEEEEecCCcCCC
Confidence 3456899999999999953334455666655544 679999999999987643 2333344556677
Q ss_pred cCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchHHHHHHhhHHH
Q 008635 187 YYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSAT 256 (558)
Q Consensus 187 ~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai~~g~~~~ 256 (558)
++|.....+ |+++++ +|++||+|+ +|.++....|. .++.++..+.+..
T Consensus 362 ~~~~~~g~~---------------klv~d~~~~~ilGa~~-~g~~~a~e~i~------~~~~ai~~~~t~~ 410 (438)
T PRK13512 362 YPGNSPLHL---------------RVYYDTSNRKILRAAA-VGKEGADKRID------VLSMAMMNQLTVD 410 (438)
T ss_pred cCCCceEEE---------------EEEEECCCCeEEEEEE-EccccHHHHHH------HHHHHHHcCCcHH
Confidence 789888888 999965 899999999 88776677777 7666666666553
No 67
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.60 E-value=1.8e-05 Score=86.52 Aligned_cols=126 Identities=11% Similarity=-0.015 Sum_probs=90.7
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccccc--ccccccchhhHHhhhcccchhhhhcc
Q 008635 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK--LTNFSTDLKEASSKATVAAVDVLRNT 169 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~--~t~~stgl~e~~~~~~~~~~~~l~~~ 169 (558)
.|+-++|+... ...+..|.+|||.+++|++| ....++......+.- ...+++|++|+.+++.|++|
T Consensus 306 ~VyAiGDv~~~-----~~la~~A~~eG~~aa~~i~g-~~~~~~~~~~p~~~~~~p~ia~vGlte~ea~~~g~~~------ 373 (471)
T PRK06467 306 HIFAIGDIVGQ-----PMLAHKGVHEGHVAAEVIAG-KKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEEGIEY------ 373 (471)
T ss_pred CEEEehhhcCC-----cccHHHHHHHHHHHHHHHcC-CCCCCCCCCCCeEEECCCceeEEECCHHHHHhcCCCe------
Confidence 36667776531 12467899999999999995 666777766666554 66899999999999999876
Q ss_pred cccceeeeecCCC-ceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchHH
Q 008635 170 IVALEESMTNGAS-FVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVPF 247 (558)
Q Consensus 170 ~~~~~~~~~~~~~-~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ 247 (558)
......-.+ .-.+++|.....+ |+|+++ +|++||+|+ +|-+. ..+|+ .++.
T Consensus 374 ----~~~~~~~~~~~~~~~~~~~~g~~---------------kli~d~~t~~ilG~~~-vg~~a-~e~i~------~~a~ 426 (471)
T PRK06467 374 ----ETATFPWAASGRAIASDCADGMT---------------KLIFDKETHRVLGGAI-VGTNA-GELLG------EIGL 426 (471)
T ss_pred ----EEEEEecCcchhhhhCCCCceEE---------------EEEEECCCCeEEEEEE-ECCCH-HHHHH------HHHH
Confidence 333333222 1223588888888 999965 899999999 88654 55777 7776
Q ss_pred HHHHhhHHH
Q 008635 248 VVFLGTSAT 256 (558)
Q Consensus 248 ai~~g~~~~ 256 (558)
++..+.+..
T Consensus 427 ai~~~~t~~ 435 (471)
T PRK06467 427 AIEMGCDAE 435 (471)
T ss_pred HHHCCCCHH
Confidence 766666543
No 68
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.57 E-value=2.1e-05 Score=85.55 Aligned_cols=126 Identities=8% Similarity=-0.024 Sum_probs=84.5
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccccc---ccccccchhhHHhhhcccchhhhhc
Q 008635 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRN 168 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~---~t~~stgl~e~~~~~~~~~~~~l~~ 168 (558)
.|+-++|+... ...+..|.+|||.+|+|++|+....+.......... ...+++|++|+.+++.|++|
T Consensus 305 ~IyAiGD~~~~-----~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~----- 374 (466)
T PRK07818 305 HIYAIGDVTAK-----LQLAHVAEAQGVVAAETIAGAETLELGDYRMMPRATFCQPQVASFGLTEEQAREEGYDV----- 374 (466)
T ss_pred CEEEEeecCCC-----cccHhHHHHHHHHHHHHHcCCCCCccCccCCCCeEEECCCCeEEEeCCHHHHHhCCCcE-----
Confidence 34556665421 235778999999999999953222221222222222 67999999999999999876
Q ss_pred ccccceeeee--cCCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCch
Q 008635 169 TIVALEESMT--NGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIV 245 (558)
Q Consensus 169 ~~~~~~~~~~--~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVL 245 (558)
..... ...+++.|+ |.....+ |+++++ +|++||+|+ +|. ....+|+ .+
T Consensus 375 -----~~~~~~~~~~~~~~~~-~~~~g~~---------------Klv~~~~~~~ilG~~~-vg~-~a~e~i~------~~ 425 (466)
T PRK07818 375 -----KVAKFPFTANGKAHGL-GDPTGFV---------------KLVADAKYGELLGGHL-IGP-DVSELLP------EL 425 (466)
T ss_pred -----EEEEEECCccchhhhc-CCCCeEE---------------EEEEECCCCeEEEEEE-ECC-CHHHHHH------HH
Confidence 22222 134444444 6777888 999965 999999999 884 6788888 77
Q ss_pred HHHHHHhhHHH
Q 008635 246 PFVVFLGTSAT 256 (558)
Q Consensus 246 a~ai~~g~~~~ 256 (558)
+.++..+.++.
T Consensus 426 ~~ai~~~~t~~ 436 (466)
T PRK07818 426 TLAQKWDLTAE 436 (466)
T ss_pred HHHHHcCCCHH
Confidence 77766666543
No 69
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.56 E-value=2.2e-05 Score=85.13 Aligned_cols=124 Identities=14% Similarity=0.065 Sum_probs=89.8
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccccc---ccccccchhhHHhhhcccchhhhhc
Q 008635 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRN 168 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~---~t~~stgl~e~~~~~~~~~~~~l~~ 168 (558)
.|+-.+++.. ....+..|.+|||.+|+|++| ....++ .......+ ...+++|++|+.+++.|++|
T Consensus 303 ~VyAiGD~~~-----~~~~~~~A~~~g~~aa~ni~~-~~~~~~-~~~~~~~~~~~~~~a~vG~te~~a~~~g~~~----- 370 (462)
T PRK06416 303 NIYAIGDIVG-----GPMLAHKASAEGIIAAEAIAG-NPHPID-YRGIPAVTYTHPEVASVGLTEAKAKEEGFDV----- 370 (462)
T ss_pred CEEEeeecCC-----CcchHHHHHHHHHHHHHHHcC-CCCCCC-CCCCCeEEECCCceEEEeCCHHHHHhcCCCe-----
Confidence 4556666652 123577899999999999995 555565 44554444 67899999999999999876
Q ss_pred ccccceeeee--cCCCceeecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCch
Q 008635 169 TIVALEESMT--NGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIV 245 (558)
Q Consensus 169 ~~~~~~~~~~--~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVL 245 (558)
++... ...+++.| ++.....+ |+|++ .+|++||+|+ +|. +...+++ .+
T Consensus 371 -----~~~~~~~~~~~~~~~-~~~~~g~~---------------kli~~~~~~~ilG~~~-~g~-~a~e~i~------~~ 421 (462)
T PRK06416 371 -----KVVKFPFAGNGKALA-LGETDGFV---------------KLIFDKKDGEVLGAHM-VGA-RASELIQ------EA 421 (462)
T ss_pred -----EEEEEecCcChHhHh-cCCCceEE---------------EEEEECCCCEEEEEEE-ECC-CHHHHHH------HH
Confidence 33322 23445454 57778888 99996 5999999999 885 5888888 77
Q ss_pred HHHHHHhhHHH
Q 008635 246 PFVVFLGTSAT 256 (558)
Q Consensus 246 a~ai~~g~~~~ 256 (558)
+.++..+.++.
T Consensus 422 ~~ai~~~~t~~ 432 (462)
T PRK06416 422 QLAINWEATPE 432 (462)
T ss_pred HHHHHCCCCHH
Confidence 77777666653
No 70
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.56 E-value=2.9e-05 Score=84.00 Aligned_cols=126 Identities=10% Similarity=-0.032 Sum_probs=87.7
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccccc-ccccccchhhHHhhhcccchhhhhccc
Q 008635 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRNTI 170 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~-~t~~stgl~e~~~~~~~~~~~~l~~~~ 170 (558)
.|+-++|+.. ....+..|.+||+.+|.|++|+......+.+.+.+.. ...+++|++|+.+++.|++|
T Consensus 304 ~IyAiGD~~~-----~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~i~~~p~ia~vG~te~~a~~~g~~~------- 371 (461)
T PRK05249 304 HIYAVGDVIG-----FPSLASASMDQGRIAAQHAVGEATAHLIEDIPTGIYTIPEISSVGKTEQELTAAKVPY------- 371 (461)
T ss_pred CEEEeeecCC-----CcccHhHHHHHHHHHHHHHcCCCcccccCCCCeEEECCCcceEecCCHHHHHHcCCCe-------
Confidence 4566666542 1124678999999999999953232344566666655 56899999999999999876
Q ss_pred ccceeee--ecCCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchHH
Q 008635 171 VALEESM--TNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVPF 247 (558)
Q Consensus 171 ~~~~~~~--~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ 247 (558)
+... .....++. ++|.....+ |+|+++ +|++||+|+ +| .....+|+ .+++
T Consensus 372 ---~~~~~~~~~~~~~~-~~~~~~g~~---------------klv~~~~~~~ilG~~~-~g-~~a~e~i~------~~~~ 424 (461)
T PRK05249 372 ---EVGRARFKELARAQ-IAGDNVGML---------------KILFHRETLEILGVHC-FG-ERATEIIH------IGQA 424 (461)
T ss_pred ---EEEEEcccccccee-ecCCCCcEE---------------EEEEECCCCEEEEEEE-EC-CCHHHHHH------HHHH
Confidence 3322 22233444 458778888 999964 899999999 88 45666788 7776
Q ss_pred HHHHhhHHH
Q 008635 248 VVFLGTSAT 256 (558)
Q Consensus 248 ai~~g~~~~ 256 (558)
++..+.++.
T Consensus 425 ai~~~~t~~ 433 (461)
T PRK05249 425 IMEQKGTIE 433 (461)
T ss_pred HHHCCCCHH
Confidence 766666544
No 71
>PRK13748 putative mercuric reductase; Provisional
Probab=97.49 E-value=3.4e-05 Score=85.69 Aligned_cols=124 Identities=10% Similarity=0.002 Sum_probs=89.8
Q ss_pred hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccccc--ccccccchhhHHhhhcccchhhhhccc
Q 008635 93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK--LTNFSTDLKEASSKATVAAVDVLRNTI 170 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~--~t~~stgl~e~~~~~~~~~~~~l~~~~ 170 (558)
|+-++|+... ...+.-|..|||++++|++| ....+++.....+.- ...+++|++|+.+++.|++|
T Consensus 398 IyA~GD~~~~-----~~~~~~A~~~g~~aa~~i~g-~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~------- 464 (561)
T PRK13748 398 IYAAGDCTDQ-----PQFVYVAAAAGTRAAINMTG-GDAALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIET------- 464 (561)
T ss_pred EEEeeecCCC-----ccchhHHHHHHHHHHHHHcC-CCcccCCCCCCeEEEccCCceeeeCCHHHHHHcCCCe-------
Confidence 5556666421 23456789999999999995 566788777665554 67999999999999999876
Q ss_pred ccceeeeecCCCceeecCC-CcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchHHH
Q 008635 171 VALEESMTNGASFVVYYYG-TTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVPFV 248 (558)
Q Consensus 171 ~~~~~~~~~~~~~~~y~pG-a~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~a 248 (558)
......-.++..|+++ .....+ |+||++ +|++||+|+ +|.+ ...+|+ .++.+
T Consensus 465 ---~~~~~~~~~~~~~~~~~~~~g~~---------------kli~d~~~~~ilG~~~-~g~~-a~e~i~------~~~~a 518 (561)
T PRK13748 465 ---DSRTLTLDNVPRALANFDTRGFI---------------KLVIEEGSGRLIGVQA-VAPE-AGELIQ------TAALA 518 (561)
T ss_pred ---EEEEEecccCchhhhcCCCCeEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HHHHH
Confidence 4444555677777776 456777 899964 999999999 7754 366677 66656
Q ss_pred HHHhhHH
Q 008635 249 VFLGTSA 255 (558)
Q Consensus 249 i~~g~~~ 255 (558)
+..+.++
T Consensus 519 i~~~~t~ 525 (561)
T PRK13748 519 IRNRMTV 525 (561)
T ss_pred HHcCCCH
Confidence 5555554
No 72
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.47 E-value=3.5e-05 Score=84.06 Aligned_cols=125 Identities=12% Similarity=0.041 Sum_probs=88.1
Q ss_pred hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccccc--ccccccchhhHHhhhcccchhhhhccc
Q 008635 93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK--LTNFSTDLKEASSKATVAAVDVLRNTI 170 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~--~t~~stgl~e~~~~~~~~~~~~l~~~~ 170 (558)
|+-.+++... ...+..|.+||+.++++++|+....+++..-..+.- ...+++|++|+.+++.|++|
T Consensus 313 IyAiGD~~~~-----~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~g~~~------- 380 (472)
T PRK05976 313 IYAIGDVIGE-----PQLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPACCYTDPEVASVGLTEEEAKEAGYDV------- 380 (472)
T ss_pred EEEeeecCCC-----cccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEECcCceEEEeCCHHHHHHcCCCE-------
Confidence 5555555421 124678999999999999954336676654222222 66899999999999999876
Q ss_pred ccceeeee--cCCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchHH
Q 008635 171 VALEESMT--NGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVPF 247 (558)
Q Consensus 171 ~~~~~~~~--~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ 247 (558)
..... ...+++.| ++.....+ |+|+++ +|++||+|+ +|. +...+|+ ++++
T Consensus 381 ---~~~~~~~~~~~~~~~-~~~~~g~~---------------kli~d~~~~~ilG~~~-~g~-~a~e~i~------~~~~ 433 (472)
T PRK05976 381 ---KVGKFPFAANGKALT-YGESDGFV---------------KVVADRDTHDILGVQA-VGP-HVTELIS------EFAL 433 (472)
T ss_pred ---EEEEEECCcchhhhh-cCCCceEE---------------EEEEECCCCEEEEEEE-ECC-CHHHHHH------HHHH
Confidence 33222 23455555 47778888 999965 899999999 884 5778888 7777
Q ss_pred HHHHhhHHH
Q 008635 248 VVFLGTSAT 256 (558)
Q Consensus 248 ai~~g~~~~ 256 (558)
++..+.++.
T Consensus 434 ai~~~~t~~ 442 (472)
T PRK05976 434 ALELGARLW 442 (472)
T ss_pred HHHCCCCHH
Confidence 777776654
No 73
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.47 E-value=3.4e-05 Score=83.75 Aligned_cols=125 Identities=14% Similarity=0.031 Sum_probs=87.5
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccccc--ccccccchhhHHhhhcccchhhhhcc
Q 008635 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK--LTNFSTDLKEASSKATVAAVDVLRNT 169 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~--~t~~stgl~e~~~~~~~~~~~~l~~~ 169 (558)
.|+-++|+..- ......|.+||+.+|+|++++....++...-..+.. ...+++|++|+.+++.|++|
T Consensus 298 ~VyAiGD~~~~-----~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~------ 366 (463)
T TIGR02053 298 GIYAAGDVTGG-----LQLEYVAAKEGVVAAENALGGANAKLDLLVIPRVVFTDPAVASVGLTEAEAQKAGIEC------ 366 (463)
T ss_pred CEEEeeecCCC-----cccHhHHHHHHHHHHHHhcCCCCCccCcCCCCeEEeccCceEEEeCCHHHHHhcCCCe------
Confidence 46666666542 235678999999999999953355666655444433 77999999999999999876
Q ss_pred cccceeeeec--CCCceeecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCchH
Q 008635 170 IVALEESMTN--GASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIVP 246 (558)
Q Consensus 170 ~~~~~~~~~~--~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVLa 246 (558)
...... ..+++.| +|..+..+ |+|++ .+|++||+|+ +|.+ ...+|+ .++
T Consensus 367 ----~~~~~~~~~~~~~~~-~~~~~g~~---------------kli~d~~~~~ilG~~~-~g~~-a~e~i~------~~~ 418 (463)
T TIGR02053 367 ----DCRTLPLTNVPRARI-NRDTRGFI---------------KLVAEPGTGKVLGVQV-VAPE-AAEVIN------EAA 418 (463)
T ss_pred ----EEEEEecccchHHHh-cCCCcEEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HHH
Confidence 333222 2223333 47778888 99996 5999999999 7866 567777 666
Q ss_pred HHHHHhhHH
Q 008635 247 FVVFLGTSA 255 (558)
Q Consensus 247 ~ai~~g~~~ 255 (558)
.++..+.+.
T Consensus 419 ~ai~~~~t~ 427 (463)
T TIGR02053 419 LAIRAGMTV 427 (463)
T ss_pred HHHHCCCCH
Confidence 666655553
No 74
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.42 E-value=4.4e-05 Score=87.37 Aligned_cols=133 Identities=13% Similarity=-0.014 Sum_probs=82.8
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccC---------cccccccc-----ccccccchhhHHhh
Q 008635 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQ---------TGGSAGSK-----LTNFSTDLKEASSK 157 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~---------~~~~a~~~-----~t~~stgl~e~~~~ 157 (558)
.|+-++|+.- . .-.+..|++||+.+++||+|+....+.+ .....+-. ...|++||+|+.++
T Consensus 464 ~IYAiGDv~g----~-~~La~~A~~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~ift~PeiA~VGlTE~eA~ 538 (659)
T PTZ00153 464 NIFCIGDANG----K-QMLAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTTPELAFIGLTEKEAK 538 (659)
T ss_pred CEEEEEecCC----C-ccCHHHHHHHHHHHHHHHcCCCccccccccccccccccccCcCCEEEECcCceEEeeCCHHHHH
Confidence 3666667641 1 2356789999999999999532221211 11122222 45889999999999
Q ss_pred hcccc--hhhhhcccccce----------eeeecCCCceeecCCC------cccccChhhhhhhhhhhhccceeecc-ch
Q 008635 158 ATVAA--VDVLRNTIVALE----------ESMTNGASFVVYYYGT------TKESLPPEIRDALNLYEDRAVKLWRP-VG 218 (558)
Q Consensus 158 ~~~~~--~~~l~~~~~~~~----------~~~~~~~~~~~y~pGa------~~~~l~p~~k~~~~~~ee~~k~i~~~-~G 218 (558)
+.|+. +.+-+ ..|+ .++-+..-|..||||. ....+ |+|+++ +|
T Consensus 539 ~~g~~~~v~v~~---~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~~~G~v---------------Kli~d~~t~ 600 (659)
T PTZ00153 539 ELYPPDNVGVEI---SFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMV---------------KIVYLKDTK 600 (659)
T ss_pred hcCCCcceEEEE---EEecccchhhhccccccccccccccccccccccccCCceEE---------------EEEEECCCC
Confidence 98853 21111 1111 1111222366899998 55667 999965 99
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCCchHHHHHHhhHH
Q 008635 219 SALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSA 255 (558)
Q Consensus 219 ~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai~~g~~~ 255 (558)
++||+|+ +|.+..+ .|. .++.++..+.++
T Consensus 601 rILGa~i-vG~~A~e-lI~------~~a~aI~~~~tv 629 (659)
T PTZ00153 601 EILGMFI-VGSYASI-LIH------EGVLAINLKLSV 629 (659)
T ss_pred eEEEEEE-ECCCHHH-HHH------HHHHHHHCCCCH
Confidence 9999999 7877654 677 666666655554
No 75
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.41 E-value=4.5e-05 Score=83.07 Aligned_cols=125 Identities=10% Similarity=-0.008 Sum_probs=86.6
Q ss_pred hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcc-cccc-Ccccccccc-ccccccchhhHHhhhcccchhhhhcc
Q 008635 93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVF-SSID-QTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRNT 169 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~-~~~~-~~~~~a~~~-~t~~stgl~e~~~~~~~~~~~~l~~~ 169 (558)
|+-++|+... ......|++|||++|+|++|+.. ..++ +.+.+++.- ...+++|++|+.+++.|++|
T Consensus 298 IyA~GD~~~~-----~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i~t~p~ia~vGlte~ea~~~g~~~------ 366 (452)
T TIGR03452 298 VWALGDVSSP-----YQLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIATVGLTEQEAREAGHDI------ 366 (452)
T ss_pred EEEeecccCc-----ccChhHHHHHHHHHHHHhcCCCCcccCCCCCCCeEEECCCCeeeeeCCHHHHHhcCCCe------
Confidence 5666666531 12345799999999999995322 1233 566666653 78999999999999999876
Q ss_pred cccceeeeecCCCceee--cCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchH
Q 008635 170 IVALEESMTNGASFVVY--YYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVP 246 (558)
Q Consensus 170 ~~~~~~~~~~~~~~~~y--~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa 246 (558)
+.. ..+.++..| +.+.....+ |+|+++ +|++||+|+ +|.+. ..+|+ .++
T Consensus 367 ----~~~-~~~~~~~~~~~~~~~~~g~~---------------Klv~d~~t~~ilG~~~-vg~~a-~e~i~------~~~ 418 (452)
T TIGR03452 367 ----TVK-IQNYGDVAYGWAMEDTTGFC---------------KLIADRDTGKLLGAHI-IGPQA-SSLIQ------PLI 418 (452)
T ss_pred ----EEE-EecCCchhhHhhcCCCCeEE---------------EEEEECCCCEEEEEEE-ECCCH-HHHHH------HHH
Confidence 332 223333333 347777778 999964 999999999 88654 67788 766
Q ss_pred HHHHHhhHHH
Q 008635 247 FVVFLGTSAT 256 (558)
Q Consensus 247 ~ai~~g~~~~ 256 (558)
.++..+.+..
T Consensus 419 ~ai~~~~t~~ 428 (452)
T TIGR03452 419 TAMAFGLDAR 428 (452)
T ss_pred HHHHcCCCHH
Confidence 6766666653
No 76
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.40 E-value=4.9e-05 Score=82.01 Aligned_cols=126 Identities=11% Similarity=0.040 Sum_probs=85.8
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccccc---ccccccchhhHHhhhcccchhhhhc
Q 008635 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRN 168 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~---~t~~stgl~e~~~~~~~~~~~~l~~ 168 (558)
.|+-++|+... + .....|..|||.+++|++|+......+........ ...+++|++|+.+++.|++|
T Consensus 286 ~IyA~GD~~~~-~----~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~----- 355 (441)
T PRK08010 286 NIWAMGDVTGG-L----QFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARESGADI----- 355 (441)
T ss_pred CEEEeeecCCC-c----cchhHHHHHHHHHHHHHcCCCCcccCccCCCCEEEECCCCceeeeCCHHHHHHcCCCe-----
Confidence 35666666431 1 45567889999999999953233333443333333 67999999999999999876
Q ss_pred ccccceeeee--cCCCceeecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCch
Q 008635 169 TIVALEESMT--NGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIV 245 (558)
Q Consensus 169 ~~~~~~~~~~--~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVL 245 (558)
..... ....++.|+++. ...+ |+|++ .+|++||+|+ +|.+ ...+|+ .+
T Consensus 356 -----~~~~~~~~~~~~~~~~~~~-~g~~---------------kli~d~~~~~ilG~~~-~g~~-a~e~i~------~~ 406 (441)
T PRK08010 356 -----QVVTLPVAAIPRARVMNDT-RGVL---------------KAIVDNKTQRILGASL-LCVD-SHEMIN------IV 406 (441)
T ss_pred -----EEEEEecCcChhhhhcCCC-ceEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HH
Confidence 33332 234445555554 4467 99996 4999999999 8854 588888 77
Q ss_pred HHHHHHhhHHH
Q 008635 246 PFVVFLGTSAT 256 (558)
Q Consensus 246 a~ai~~g~~~~ 256 (558)
+.++..+.+..
T Consensus 407 ~~ai~~~~t~~ 417 (441)
T PRK08010 407 KMVMDAGLPYS 417 (441)
T ss_pred HHHHHCCCCHH
Confidence 77776666643
No 77
>PRK14694 putative mercuric reductase; Provisional
Probab=97.35 E-value=5.6e-05 Score=82.43 Aligned_cols=125 Identities=14% Similarity=0.007 Sum_probs=86.9
Q ss_pred hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccC--ccccccccccccccchhhHHhhhcccchhhhhccc
Q 008635 93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQ--TGGSAGSKLTNFSTDLKEASSKATVAAVDVLRNTI 170 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~--~~~~a~~~~t~~stgl~e~~~~~~~~~~~~l~~~~ 170 (558)
|+-++|+.. ....+..|..|||.+|.|++| ....++. .-+.-......+++|++|+.+++.|++|
T Consensus 305 IyA~GD~~~-----~~~~~~~A~~~G~~aa~~i~~-~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~------- 371 (468)
T PRK14694 305 IYAAGDCTD-----QPQFVYVAAAGGSRAAINMTG-GDASLDLSAMPEVIFTDPQVATVGLSEAEAQAQGYDT------- 371 (468)
T ss_pred EEEEeecCC-----CcccHHHHHHHHHHHHHHhcC-CCcccccCCCCeEEECCCCeEEeeCCHHHHHHcCCce-------
Confidence 555566642 123566789999999999995 4433322 2222233378999999999999999876
Q ss_pred ccceeeeecCCCceeecCC-CcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchHHH
Q 008635 171 VALEESMTNGASFVVYYYG-TTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVPFV 248 (558)
Q Consensus 171 ~~~~~~~~~~~~~~~y~pG-a~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~a 248 (558)
......-.++..|+++ .....+ |+|+++ +|++||+|+ +|.+ ...+|+ .++.+
T Consensus 372 ---~~~~~~~~~~~~~~~~~~~~g~~---------------klv~~~~~~~ilG~~~-~g~~-a~e~i~------~~~~a 425 (468)
T PRK14694 372 ---DSRTLDLENVPRALVNFDTGGFI---------------KMVAERGSGRLLGVQV-VAGE-AGELIQ------TAVMA 425 (468)
T ss_pred ---EEEEEecccchhhhhcCCCceEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HHHHH
Confidence 4555555667778876 445677 999964 999999999 7875 466677 66666
Q ss_pred HHHhhHHH
Q 008635 249 VFLGTSAT 256 (558)
Q Consensus 249 i~~g~~~~ 256 (558)
+..+.++.
T Consensus 426 i~~~~t~~ 433 (468)
T PRK14694 426 LRARMTVN 433 (468)
T ss_pred HHCCCCHH
Confidence 66666543
No 78
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.33 E-value=7.1e-05 Score=81.76 Aligned_cols=125 Identities=11% Similarity=0.012 Sum_probs=85.6
Q ss_pred hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcccc-ccCcccccccc-ccccccchhhHHhhhcccchhhhhccc
Q 008635 93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSS-IDQTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRNTI 170 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~-~~~~~~~a~~~-~t~~stgl~e~~~~~~~~~~~~l~~~~ 170 (558)
|+-++|+.. ....+..|.+||+.+++|++|..... ..+.+.+.+.. ...+++|++|+.+++.|++|
T Consensus 307 IyA~GD~~~-----~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~vf~~p~~a~vGlte~~a~~~g~~~------- 374 (466)
T PRK07845 307 IYAAGDCTG-----VLPLASVAAMQGRIAMYHALGEAVSPLRLKTVASNVFTRPEIATVGVSQAAIDSGEVPA------- 374 (466)
T ss_pred EEEEeeccC-----CccchhHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCCcceeecCCHHHHHhCCCce-------
Confidence 555566642 12357889999999999999532121 22445555553 77999999999999999876
Q ss_pred ccceeeeecC--CCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchHH
Q 008635 171 VALEESMTNG--ASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVPF 247 (558)
Q Consensus 171 ~~~~~~~~~~--~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ 247 (558)
+.....- ..++ +++|.....+ |+|+++ +|++||+|+ +|.+ ...+|+ .++.
T Consensus 375 ---~~~~~~~~~~~~~-~~~~~~~g~~---------------kli~d~~~~~ilG~~~-~g~~-a~e~i~------~~~~ 427 (466)
T PRK07845 375 ---RTVMLPLATNPRA-KMSGLRDGFV---------------KLFCRPGTGVVIGGVV-VAPR-ASELIL------PIAL 427 (466)
T ss_pred ---EEEEEecccCchh-hhcCCCceEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HHHH
Confidence 3333222 2233 3588888888 999965 999999999 7854 456777 7666
Q ss_pred HHHHhhHHH
Q 008635 248 VVFLGTSAT 256 (558)
Q Consensus 248 ai~~g~~~~ 256 (558)
++..+.++.
T Consensus 428 ai~~~~t~~ 436 (466)
T PRK07845 428 AVQNRLTVD 436 (466)
T ss_pred HHHcCCCHH
Confidence 666665543
No 79
>PRK06116 glutathione reductase; Validated
Probab=97.30 E-value=6e-05 Score=81.54 Aligned_cols=126 Identities=4% Similarity=-0.081 Sum_probs=85.2
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcc-cc-ccCcccccccc-ccccccchhhHHhhhcccc--hhhh
Q 008635 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVF-SS-IDQTGGSAGSK-LTNFSTDLKEASSKATVAA--VDVL 166 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~-~~-~~~~~~~a~~~-~t~~stgl~e~~~~~~~~~--~~~l 166 (558)
.|+-++++... -..+..|.+|||.+|+|++|+.. .. .-..+.+.+.. ...+++||+|+.+++.|++ +
T Consensus 297 ~IyA~GD~~~~-----~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~if~~p~~a~vGlte~~a~~~~~~~~~--- 368 (450)
T PRK06116 297 GIYAVGDVTGR-----VELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAREQYGEDNV--- 368 (450)
T ss_pred CEEEEeecCCC-----cCcHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCeEEeCCCccEEeeCCHHHHHHhCCCCcE---
Confidence 45666665421 12467899999999999996332 11 12567777776 4899999999999999875 3
Q ss_pred hcccccceeeee-cCCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCc
Q 008635 167 RNTIVALEESMT-NGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPI 244 (558)
Q Consensus 167 ~~~~~~~~~~~~-~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PV 244 (558)
..... ....+..++.+..+..+ |+|+++ +|++||+|+ +| .+...+|+ .
T Consensus 369 -------~~~~~~~~~~~~~~~~~~~~g~~---------------klv~~~~~~~ilG~~~-~g-~~a~e~i~------~ 418 (450)
T PRK06116 369 -------KVYRSSFTPMYTALTGHRQPCLM---------------KLVVVGKEEKVVGLHG-IG-FGADEMIQ------G 418 (450)
T ss_pred -------EEEEEecchhHHHHhcCCCceEE---------------EEEEECCCCEEEEEEE-EC-CCHHHHHH------H
Confidence 11111 11222334456777888 999965 999999999 88 55777788 6
Q ss_pred hHHHHHHhhHH
Q 008635 245 VPFVVFLGTSA 255 (558)
Q Consensus 245 La~ai~~g~~~ 255 (558)
++.++..+.+.
T Consensus 419 ~~~ai~~~~t~ 429 (450)
T PRK06116 419 FAVAIKMGATK 429 (450)
T ss_pred HHHHHHCCCCH
Confidence 66666555554
No 80
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.30 E-value=6.8e-05 Score=81.17 Aligned_cols=126 Identities=12% Similarity=0.067 Sum_probs=86.4
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcccccc-Cccccccc-cccccccchhhHHhhhcccchhhhhcc
Q 008635 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSID-QTGGSAGS-KLTNFSTDLKEASSKATVAAVDVLRNT 169 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~-~~~~~a~~-~~t~~stgl~e~~~~~~~~~~~~l~~~ 169 (558)
.|+-++|+..- .-.+..|.+|||.+|+|+++.....++ ..+.+.+. ....+++|++|+.+++.|++|
T Consensus 300 ~IyA~GD~~~~-----~~~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~~~------ 368 (460)
T PRK06292 300 GIYAAGDVNGK-----PPLLHEAADEGRIAAENAAGDVAGGVRYHPIPSVVFTDPQIASVGLTEEELKAAGIDY------ 368 (460)
T ss_pred CEEEEEecCCC-----ccchhHHHHHHHHHHHHhcCCCCCCcCCCCCCeEEECCCccEEeECCHHHHHhcCCCe------
Confidence 35556666421 123578999999999999953233333 22333333 378999999999999999876
Q ss_pred cccceeeee--cCCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchH
Q 008635 170 IVALEESMT--NGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVP 246 (558)
Q Consensus 170 ~~~~~~~~~--~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa 246 (558)
+.... ...+++.| ++.....+ |+||++ +|++||+|+ +|.+ ...+|+ .++
T Consensus 369 ----~~~~~~~~~~~~~~~-~~~~~g~~---------------klv~d~~~~~ilG~~~-vg~~-a~e~i~------~~~ 420 (460)
T PRK06292 369 ----VVGEVPFEAQGRARV-MGKNDGFV---------------KVYADKKTGRLLGAHI-IGPD-AEHLIH------LLA 420 (460)
T ss_pred ----EEEEEecccchHHHh-cCCCCeEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HHH
Confidence 33322 23344444 57788888 999965 899999999 8864 777888 777
Q ss_pred HHHHHhhHHH
Q 008635 247 FVVFLGTSAT 256 (558)
Q Consensus 247 ~ai~~g~~~~ 256 (558)
.++..+.+..
T Consensus 421 ~ai~~~~t~~ 430 (460)
T PRK06292 421 WAMQQGLTVE 430 (460)
T ss_pred HHHHCCCCHH
Confidence 7777666543
No 81
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.23 E-value=9.7e-05 Score=81.61 Aligned_cols=127 Identities=14% Similarity=0.052 Sum_probs=82.7
Q ss_pred hhhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcccccc-Ccccccccc-ccccccchhhHHhhhcccchhhhhc
Q 008635 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSID-QTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRN 168 (558)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~-~~~~~a~~~-~t~~stgl~e~~~~~~~~~~~~l~~ 168 (558)
..|+-++|+... ...+..|++||+.+++|++|+....++ ..+.+.+.. ...|++||+|+.+++.+..+.+
T Consensus 319 ~~IyA~GDv~~~-----~~l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~vft~peia~vGlte~eA~~~~~~~~~--- 390 (486)
T TIGR01423 319 PNIYAIGDVTDR-----VMLTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLVEEDAAKKFEKVAV--- 390 (486)
T ss_pred CCEEEeeecCCC-----cccHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEEeCCCceEEeeCCHHHHHhcCCceEE---
Confidence 456667777531 124456999999999999964333333 446666666 5799999999999987654411
Q ss_pred ccccceeeeecCCCceeecCCCc--ccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCch
Q 008635 169 TIVALEESMTNGASFVVYYYGTT--KESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIV 245 (558)
Q Consensus 169 ~~~~~~~~~~~~~~~~~y~pGa~--~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVL 245 (558)
+...+ .++..++++.. ...+ |+|++ .+|++||+|+ +|. ....+|+ .+
T Consensus 391 ----~~~~~---~~~~~~~~~~~~~~g~~---------------Klv~d~~~~~iLGa~i-vg~-~a~elI~------~~ 440 (486)
T TIGR01423 391 ----YESSF---TPLMHNISGSKYKKFVA---------------KIVTNHADGTVLGVHL-LGD-SSPEIIQ------AV 440 (486)
T ss_pred ----EEEee---CchhhhhccCccCceEE---------------EEEEECCCCEEEEEEE-ECC-CHHHHHH------HH
Confidence 11111 12333456543 3456 88996 4999999999 784 4777787 66
Q ss_pred HHHHHHhhHH
Q 008635 246 PFVVFLGTSA 255 (558)
Q Consensus 246 a~ai~~g~~~ 255 (558)
+.++..+.+.
T Consensus 441 ~~ai~~~~t~ 450 (486)
T TIGR01423 441 GICLKLNAKI 450 (486)
T ss_pred HHHHHcCCCH
Confidence 6665555553
No 82
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=97.22 E-value=0.00068 Score=70.98 Aligned_cols=100 Identities=18% Similarity=0.276 Sum_probs=70.6
Q ss_pred CCcccCHHHHHHHHhCC-----CCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHH
Q 008635 269 YSGDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTA 343 (558)
Q Consensus 269 ~~~~ISp~El~elL~~~-----e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~a 343 (558)
...+|+++.++.+++.. -+.+|||+|=+-||..|||-.|+ ||.-.+ .+.-+...
T Consensus 240 s~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaV--------Ni~s~~---~l~~~F~h---------- 298 (427)
T COG5105 240 SIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAV--------NISSTK---KLGLLFRH---------- 298 (427)
T ss_pred chhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeee--------ecchHH---HHHHHHHh----------
Confidence 34589999999998531 24679999999999999999999 876321 11111110
Q ss_pred HHHhhhhccCCCcEEEEEeCCC-hhHHHHHHHHHHcC------------CCcEEEEcccHHHHHH
Q 008635 344 AVIRNLKIVQDRSKVIVMDADG-TRSKGIARSLRKLG------------VMVTFLVQGGFQSWVK 395 (558)
Q Consensus 344 a~i~~Lkgl~kdk~VVVyC~sG-~RS~~AA~~L~~~G------------fknVy~LdGG~~aWka 395 (558)
|-+..-.-+|++|... .|+...|..|+.+- |+.||+|+|||+.+-.
T Consensus 299 ------kplThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~ 357 (427)
T COG5105 299 ------KPLTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS 357 (427)
T ss_pred ------ccccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence 0012345789999865 49999998886532 4689999999987755
No 83
>PLN02507 glutathione reductase
Probab=97.20 E-value=0.00012 Score=80.86 Aligned_cols=124 Identities=6% Similarity=-0.046 Sum_probs=80.9
Q ss_pred hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCc--cccccccc-cccccchhhHHhhhc-ccchhhhhc
Q 008635 93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQT--GGSAGSKL-TNFSTDLKEASSKAT-VAAVDVLRN 168 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~--~~~a~~~~-t~~stgl~e~~~~~~-~~~~~~l~~ 168 (558)
|+-++|+... ......|++|||.+++|++|+. ..+.+. +...+... ..+++|++|+.+++. ++++
T Consensus 333 IyAiGDv~~~-----~~l~~~A~~qg~~aa~ni~g~~-~~~~~~~~~p~~if~~p~ia~vGlte~ea~~~~~~~~----- 401 (499)
T PLN02507 333 IWAIGDVTNR-----INLTPVALMEGTCFAKTVFGGQ-PTKPDYENVACAVFCIPPLSVVGLSEEEAVEQAKGDI----- 401 (499)
T ss_pred EEEeeEcCCC-----CccHHHHHHHHHHHHHHHcCCC-CCcCCCCCCCeEEECCCccEEEeCCHHHHHhccCCCE-----
Confidence 6666776521 1245789999999999999643 322222 23444443 689999999999987 5544
Q ss_pred ccccceeeeecCCCceeecCC-CcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchH
Q 008635 169 TIVALEESMTNGASFVVYYYG-TTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVP 246 (558)
Q Consensus 169 ~~~~~~~~~~~~~~~~~y~pG-a~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa 246 (558)
......-.....|+++ ..+..+ |+||++ +|++||+|+ +|.+. ..+|+ .++
T Consensus 402 -----~~~~~~~~~~~~~~~~~~~~g~~---------------Kli~d~~t~~ilG~~~-vg~~a-~e~i~------~~~ 453 (499)
T PLN02507 402 -----LVFTSSFNPMKNTISGRQEKTVM---------------KLIVDAETDKVLGASM-CGPDA-PEIMQ------GIA 453 (499)
T ss_pred -----EEEEeecCccccccccCCCCEEE---------------EEEEECCCCEEEEEEE-ECCCH-HHHHH------HHH
Confidence 2222222222346666 455677 999965 999999999 88554 56777 666
Q ss_pred HHHHHhhHH
Q 008635 247 FVVFLGTSA 255 (558)
Q Consensus 247 ~ai~~g~~~ 255 (558)
.++..+.++
T Consensus 454 ~ai~~~~t~ 462 (499)
T PLN02507 454 VALKCGATK 462 (499)
T ss_pred HHHHCCCCH
Confidence 666666554
No 84
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.20 E-value=0.00011 Score=80.38 Aligned_cols=121 Identities=11% Similarity=-0.008 Sum_probs=84.1
Q ss_pred hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcccc-----ccCccccccccccccccchhhHHhhhcccchhhhh
Q 008635 93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSS-----IDQTGGSAGSKLTNFSTDLKEASSKATVAAVDVLR 167 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~-----~~~~~~~a~~~~t~~stgl~e~~~~~~~~~~~~l~ 167 (558)
|+-++|+... .....-|++|||.+++|++| .... +..++.| ....+++|++|+.+++.|++|
T Consensus 308 IyA~GD~~~~-----~~la~~A~~~g~~aa~~i~~-~~~~~~~~~~p~~~~t---~p~ia~vGlte~~a~~~g~~~---- 374 (466)
T PRK06115 308 VWVIGDVTSG-----PMLAHKAEDEAVACIERIAG-KAGEVNYGLIPGVIYT---RPEVATVGKTEEQLKAEGRAY---- 374 (466)
T ss_pred EEEeeecCCC-----cccHHHHHHHHHHHHHHHcC-CCCCCCCCCCCeEEEC---CcccEEeeCCHHHHHHCCCCE----
Confidence 5556666431 23578899999999999995 4322 2233333 267999999999999999876
Q ss_pred cccccceeee--ecCCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCc
Q 008635 168 NTIVALEESM--TNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPI 244 (558)
Q Consensus 168 ~~~~~~~~~~--~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PV 244 (558)
.... ....+++.|+ +.....+ |+||++ +|++||+|+ +|. ....+|+ .
T Consensus 375 ------~~~~~~~~~~~~~~~~-~~~~g~~---------------klv~~~~~~~ilG~~~-~g~-~a~e~i~------~ 424 (466)
T PRK06115 375 ------KVGKFPFTANSRAKIN-HETEGFA---------------KILADARTDEVLGVHM-VGP-SVSEMIG------E 424 (466)
T ss_pred ------EEEEEecccChhhHhc-CCCceEE---------------EEEEECCCCEEEEEEE-ECC-CHHHHHH------H
Confidence 3322 2345555554 5566788 999965 999999999 884 5777788 7
Q ss_pred hHHHHHHhhHHH
Q 008635 245 VPFVVFLGTSAT 256 (558)
Q Consensus 245 La~ai~~g~~~~ 256 (558)
++.++..+.+..
T Consensus 425 ~~~ai~~~~t~~ 436 (466)
T PRK06115 425 FCVAMEFSASAE 436 (466)
T ss_pred HHHHHHcCCCHH
Confidence 776666666543
No 85
>PTZ00058 glutathione reductase; Provisional
Probab=97.10 E-value=0.00014 Score=81.88 Aligned_cols=112 Identities=8% Similarity=-0.085 Sum_probs=75.2
Q ss_pred hhhhHhhhHhHHHHHhhcCcc-ccccCcccccccc-ccccccchhhHHhhhc-ccc-hhhhhcccccceeeeecCCCcee
Q 008635 110 SLTSIKKSTSEAVDNVVSRVF-SSIDQTGGSAGSK-LTNFSTDLKEASSKAT-VAA-VDVLRNTIVALEESMTNGASFVV 185 (558)
Q Consensus 110 ~~~~a~~~~r~~~d~~~~g~~-~~~~~~~~~a~~~-~t~~stgl~e~~~~~~-~~~-~~~l~~~~~~~~~~~~~~~~~~~ 185 (558)
....|++|||++|+|++|+.. .....++.+.+.- ...|++||+|+.++.. |+. + ++...+..+..
T Consensus 414 la~~A~~~g~~aa~ni~g~~~~~~~~~~ip~~vft~peiA~vGlte~eA~~~~g~~~~-----------~~~~~~~~~~~ 482 (561)
T PTZ00058 414 LTPVAINAGRLLADRLFGPFSRTTNYKLIPSVIFSHPPIGTIGLSEQEAIDIYGKENV-----------KIYESRFTNLF 482 (561)
T ss_pred chHHHHHHHHHHHHHHhCCCCcccCCCCCCeEEeCCchheeeeCCHHHHHHhcCCCcE-----------EEEEeecchhh
Confidence 467899999999999996422 1222456666665 5799999999999977 542 2 22222332221
Q ss_pred e-----cCCC-cccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCchHHHHHHhhHH
Q 008635 186 Y-----YYGT-TKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSA 255 (558)
Q Consensus 186 y-----~pGa-~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai~~g~~~ 255 (558)
| .|+. ....+ |+|++ .+|++||+|+ +| .....+|+ .++.++..+.++
T Consensus 483 ~~~~~~~~~~~~~g~~---------------Kli~~~~t~~ILG~~i-vG-~~a~elI~------~~a~ai~~~~t~ 536 (561)
T PTZ00058 483 FSVYDMDPAQKEKTYL---------------KLVCVGKEELIKGLHI-VG-LNADEILQ------GFAVALKMNATK 536 (561)
T ss_pred hhhhcccccCCCCeEE---------------EEEEECCCCEEEEEEE-EC-CCHHHHHH------HHHHHHHcCCCH
Confidence 1 1443 34566 88996 5999999999 88 55777888 766666666554
No 86
>PLN02546 glutathione reductase
Probab=97.08 E-value=0.00014 Score=81.71 Aligned_cols=127 Identities=8% Similarity=-0.063 Sum_probs=86.4
Q ss_pred hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccc-cccCcccccccc-ccccccchhhHHhhhcccchhhhhccc
Q 008635 93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFS-SIDQTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRNTI 170 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~-~~~~~~~~a~~~-~t~~stgl~e~~~~~~~~~~~~l~~~~ 170 (558)
|+-++|+... ...+..|++|||.+|+|++|+... ...+.+.+.+.. ...+++||+|+.+++.|++|++.
T Consensus 383 IYAaGDv~~~-----~~l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~~vft~Peia~VGlte~eA~~~g~~~~~~---- 453 (558)
T PLN02546 383 IWAVGDVTDR-----INLTPVALMEGGALAKTLFGNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYGDVDVF---- 453 (558)
T ss_pred EEEeeccCCC-----cccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCchHhhccCCHHHHHHcCCCeEEE----
Confidence 5556666421 124568999999999999964322 223567776666 47999999999999998876321
Q ss_pred ccceeeeecCCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchHHHH
Q 008635 171 VALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVPFVV 249 (558)
Q Consensus 171 ~~~~~~~~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai 249 (558)
...+ ..++..|+++.....+ |+|+++ +|++||+|+ +|.+ ...+|+ .++.++
T Consensus 454 ---~~~~--~~~~~~~~~~~~~g~~---------------Klv~d~~t~~ILGa~i-vG~~-a~elI~------~~a~ai 505 (558)
T PLN02546 454 ---TANF--RPLKATLSGLPDRVFM---------------KLIVCAKTNKVLGVHM-CGED-APEIIQ------GFAVAV 505 (558)
T ss_pred ---EEec--ccchhhhhCCCCcEEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HHHHHH
Confidence 1111 1233344455666777 999964 999999999 8865 577788 777777
Q ss_pred HHhhHHH
Q 008635 250 FLGTSAT 256 (558)
Q Consensus 250 ~~g~~~~ 256 (558)
..+.+..
T Consensus 506 ~~~~t~~ 512 (558)
T PLN02546 506 KAGLTKA 512 (558)
T ss_pred HCCCCHH
Confidence 7666643
No 87
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.08 E-value=0.00015 Score=78.89 Aligned_cols=126 Identities=6% Similarity=0.006 Sum_probs=83.8
Q ss_pred hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcccccc-Cccccccc-cccccccchhhHHhhhcccchhhhhccc
Q 008635 93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSID-QTGGSAGS-KLTNFSTDLKEASSKATVAAVDVLRNTI 170 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~-~~~~~a~~-~~t~~stgl~e~~~~~~~~~~~~l~~~~ 170 (558)
|+-++|+.. . -..+..|++|||+++++++| ....++ ..+...+. ....+++|++|+.+++.|++|.+-+
T Consensus 300 VyA~GD~~~-~----~~la~~A~~~g~~aa~~~~g-~~~~~~~~~~p~~v~~~p~~a~vGlte~~a~~~g~~~~~~~--- 370 (458)
T PRK06912 300 IYACGDVIG-G----IQLAHVAFHEGTTAALHASG-EDVKVNYHAVPRCIYTSPEIASVGLTEKQAREQYGDIRIGE--- 370 (458)
T ss_pred EEEEeecCC-C----cccHHHHHHHHHHHHHHHcC-CCCCCCcCCCCeEEecCchhEEeeCCHHHHHHCCCCeEEEE---
Confidence 555666552 1 23466899999999999995 554443 44555554 2668999999999999998762211
Q ss_pred ccceeeeecCCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchHHHH
Q 008635 171 VALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVPFVV 249 (558)
Q Consensus 171 ~~~~~~~~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai 249 (558)
.......++.| .+.....+ |+||++ +|++||+|+ +|. ....+|+ .++.++
T Consensus 371 -----~~~~~~~~~~~-~~~~~g~~---------------kli~d~~~~~ilG~~~-~g~-~a~e~i~------~~~~ai 421 (458)
T PRK06912 371 -----FPFTANGKALI-IGEQTGKV---------------KVIVEPKYQEIVGISI-IGP-RATELIG------QGTVMI 421 (458)
T ss_pred -----EecCcchhHhh-cCCCceEE---------------EEEEECCCCEEEEEEE-ECC-CHHHHHH------HHHHHH
Confidence 01223333333 34466677 999965 999999999 786 4556788 766666
Q ss_pred HHhhHHH
Q 008635 250 FLGTSAT 256 (558)
Q Consensus 250 ~~g~~~~ 256 (558)
..+.+..
T Consensus 422 ~~~~t~~ 428 (458)
T PRK06912 422 HTEVTAD 428 (458)
T ss_pred HCCCCHH
Confidence 6666543
No 88
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.05 E-value=0.00019 Score=78.54 Aligned_cols=126 Identities=8% Similarity=-0.048 Sum_probs=85.9
Q ss_pred hhhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccc-cCccccccc-cccccccchhhHHhhhcccchhhhhc
Q 008635 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSI-DQTGGSAGS-KLTNFSTDLKEASSKATVAAVDVLRN 168 (558)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~-~~~~~~a~~-~~t~~stgl~e~~~~~~~~~~~~l~~ 168 (558)
..|+-++++... ...+..|.+||+.+|+++.| ....+ ...+.+.+. ....+++|++|+.+++.|++|
T Consensus 315 ~~VyA~GD~~~~-----~~~~~~A~~~G~~aa~~i~g-~~~~~~~~~~p~~~~~~pe~a~vGlte~~a~~~g~~~----- 383 (475)
T PRK06327 315 PNVYAIGDVVRG-----PMLAHKAEEEGVAVAERIAG-QKGHIDYNTIPWVIYTSPEIAWVGKTEQQLKAEGVEY----- 383 (475)
T ss_pred CCEEEEEeccCC-----cchHHHHHHHHHHHHHHHcC-CCCCCCCCCCCeEEeCCcceEEEeCCHHHHHHcCCCE-----
Confidence 345566666431 13577899999999999995 33222 123344443 267899999999999999876
Q ss_pred ccccceeeee--cCCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCch
Q 008635 169 TIVALEESMT--NGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIV 245 (558)
Q Consensus 169 ~~~~~~~~~~--~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVL 245 (558)
..... ....++.| .+.....+ |+|+++ +|++||+|+ +|.+ ...+|+ .+
T Consensus 384 -----~~~~~~~~~~~~~~~-~~~~~g~~---------------klv~d~~~~~ilG~~~-~g~~-a~e~i~------~~ 434 (475)
T PRK06327 384 -----KAGKFPFMANGRALA-MGEPDGFV---------------KIIADAKTDEILGVHV-IGPN-ASELIA------EA 434 (475)
T ss_pred -----EEEEEcccccchhhh-cCCCCeEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------HH
Confidence 33322 22344554 46667888 999965 999999999 8854 677787 77
Q ss_pred HHHHHHhhHHH
Q 008635 246 PFVVFLGTSAT 256 (558)
Q Consensus 246 a~ai~~g~~~~ 256 (558)
+.++..+.++.
T Consensus 435 ~~ai~~~~t~~ 445 (475)
T PRK06327 435 VVAMEFKASSE 445 (475)
T ss_pred HHHHHCCCCHH
Confidence 77777666643
No 89
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=96.96 E-value=0.00021 Score=77.85 Aligned_cols=125 Identities=8% Similarity=0.067 Sum_probs=80.6
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccc-ccc-Ccccccccc-ccccccchhhHHhhhc-ccc-hhhh
Q 008635 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFS-SID-QTGGSAGSK-LTNFSTDLKEASSKAT-VAA-VDVL 166 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~-~~~-~~~~~a~~~-~t~~stgl~e~~~~~~-~~~-~~~l 166 (558)
.|+-++|+... ...+..|.+|||.+|+|++||... .++ ..+...+.- ...+++||+|+.+++. |+. +
T Consensus 297 ~IyAiGD~~~~-----~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~f~~p~ia~vGlte~~a~~~~g~~~~--- 368 (450)
T TIGR01421 297 GIYALGDVVGK-----VELTPVAIAAGRKLSERLFNGKTDDKLDYNNVPTVVFSHPPIGTIGLTEKEAIEKYGKENI--- 368 (450)
T ss_pred CEEEEEecCCC-----cccHHHHHHHHHHHHHHHhcCCCCCccCcccCCeEEeCCCceEEEeCCHHHHHhhcCCCCE---
Confidence 35666665421 123567899999999999964322 111 233333332 5689999999999876 653 2
Q ss_pred hcccccceeeeecCCCceeec---CCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCC
Q 008635 167 RNTIVALEESMTNGASFVVYY---YGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPND 242 (558)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~y~---pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~ 242 (558)
++...+.+ ..|+ +|.....+ |+|++ .+|++||+|+ +| .....+|+
T Consensus 369 --------~~~~~~~~-~~~~~~~~~~~~g~~---------------klv~~~~~~~ilG~~~-~g-~~a~e~i~----- 417 (450)
T TIGR01421 369 --------KVYNSSFT-PMYYAMTSEKQKCRM---------------KLVCAGKEEKVVGLHG-IG-DGVDEMLQ----- 417 (450)
T ss_pred --------EEEEEEcC-hhHHHHhcCCCceEE---------------EEEEECCCCEEEEEEE-EC-CCHHHHHH-----
Confidence 12222222 3333 47777788 99996 5999999999 78 67777788
Q ss_pred CchHHHHHHhhHHH
Q 008635 243 PIVPFVVFLGTSAT 256 (558)
Q Consensus 243 PVLa~ai~~g~~~~ 256 (558)
.++.++..+.+..
T Consensus 418 -~~~~ai~~~~t~~ 430 (450)
T TIGR01421 418 -GFAVAIKMGATKA 430 (450)
T ss_pred -HHHHHHHCCCCHH
Confidence 7766666665543
No 90
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=96.88 E-value=4.6e-05 Score=67.25 Aligned_cols=81 Identities=14% Similarity=0.122 Sum_probs=58.9
Q ss_pred ccccccchhhHHhhhcccchhhhhcccccceeeeecCCCceeecCCCcccccChhhhhhhhhhhhccceeecc-chhhhH
Q 008635 144 LTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQ 222 (558)
Q Consensus 144 ~t~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLg 222 (558)
...+++|++|+.+++.|++| .+.+......+++.|+++ ....+ |+|+++ +|++||
T Consensus 9 p~ia~vGlte~~a~~~g~~~--------~~~~~~~~~~~~~~~~~~-~~g~~---------------Kli~d~~t~~IlG 64 (110)
T PF02852_consen 9 PEIASVGLTEEEARKQGIDY--------EVVTVPFKSNDRARYYPE-TEGFV---------------KLIFDKKTGRILG 64 (110)
T ss_dssp SEEEEEES-HHHHHHHTSGE--------EEEEEEEGGEHHHHHTTT-TEEEE---------------EEEEETTTTBEEE
T ss_pred CceEEEccCHHHHHhccCce--------eeeeecccccchhcccCC-cceee---------------EEEEEeeccceee
Confidence 45889999999999999876 223344445666777777 77888 999965 999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCchHHHHHHhhHHH
Q 008635 223 QQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSAT 256 (558)
Q Consensus 223 aQ~~vg~~gvdkridf~~~~PVLa~ai~~g~~~~ 256 (558)
+|+ +|.+ ...+|+ .++.++..+.+..
T Consensus 65 a~~-vg~~-a~e~I~------~~~~ai~~~~t~~ 90 (110)
T PF02852_consen 65 AQI-VGPN-ASELIN------ELALAIQNGLTVE 90 (110)
T ss_dssp EEE-EETT-HHHHHH------HHHHHHHTTSBHH
T ss_pred eee-ecCc-hHHHHH------HHHHHHHcCCCHH
Confidence 999 7844 444777 6666666666544
No 91
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.75 E-value=0.00044 Score=74.87 Aligned_cols=126 Identities=11% Similarity=0.043 Sum_probs=84.8
Q ss_pred hhhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccccc---ccccccchhhHHhhhcccchhhhh
Q 008635 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLR 167 (558)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~---~t~~stgl~e~~~~~~~~~~~~l~ 167 (558)
..|+-.+++.. ....+..|.+||+++|+++.++....++. ....... ...+++|++|+.+++.|++|
T Consensus 300 ~~IyaiGD~~~-----~~~~~~~A~~~g~~aa~~i~~~~~~~~~~-~~~~~~~~~~~~~a~vG~~~~~a~~~g~~~---- 369 (461)
T TIGR01350 300 PGIYAIGDVIG-----GPMLAHVASHEGIVAAENIAGKEPAPIDY-DAVPSCIYTDPEVASVGLTEEQAKEAGYDV---- 369 (461)
T ss_pred CCEEEeeecCC-----CcccHHHHHHHHHHHHHHHcCCCCCCCCC-CCCCeEEecCCceEEEeCCHHHHHhCCCCe----
Confidence 34555566542 12346789999999999999533323331 2222222 56889999999999999876
Q ss_pred cccccceeeeec--CCCceeecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcCCCCCCCc
Q 008635 168 NTIVALEESMTN--GASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLGFDPNDPI 244 (558)
Q Consensus 168 ~~~~~~~~~~~~--~~~~~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkridf~~~~PV 244 (558)
+..... ..+++.| ++.....+ |++++ .+|++||+|+ +|.+ ...+++ +
T Consensus 370 ------~~~~~~~~~~~~~~~-~~~~~g~~---------------kl~~~~~~~~ilG~~~-~g~~-a~e~i~------~ 419 (461)
T TIGR01350 370 ------KIGKFPFAANGKALA-LGETDGFV---------------KIIADKKTGEILGAHI-IGPH-ATELIS------E 419 (461)
T ss_pred ------EEEEEeCccchHHHh-cCCCceEE---------------EEEEECCCCEEEEEEE-ECCC-HHHHHH------H
Confidence 333232 2334444 47778888 99996 4899999999 8854 567788 7
Q ss_pred hHHHHHHhhHHH
Q 008635 245 VPFVVFLGTSAT 256 (558)
Q Consensus 245 La~ai~~g~~~~ 256 (558)
++.++..+.++.
T Consensus 420 ~~~ai~~~~t~~ 431 (461)
T TIGR01350 420 AVLAMELELTVE 431 (461)
T ss_pred HHHHHHCCCCHH
Confidence 777777776654
No 92
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.69 E-value=0.00056 Score=73.79 Aligned_cols=115 Identities=7% Similarity=-0.081 Sum_probs=79.1
Q ss_pred hhhhHhhhHhHHHHHhhcCcc--ccccCcccccccc-ccccccchhhHHhhhcccchhhhhcccccceeeeecCCCceee
Q 008635 110 SLTSIKKSTSEAVDNVVSRVF--SSIDQTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVY 186 (558)
Q Consensus 110 ~~~~a~~~~r~~~d~~~~g~~--~~~~~~~~~a~~~-~t~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y 186 (558)
..+-|..++|.++.+++++.. ....+.+.+.+.- ...+++|++|+.+++.|++|.+-+ .......++.
T Consensus 298 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~--------~~~~~~~~~~- 368 (438)
T PRK07251 298 FTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTTMFITPPLSQVGLTEKEAKEAGLPYAVKE--------LLVAAMPRAH- 368 (438)
T ss_pred cHhHHHHHHHHHHHHHcCCCCccccccCCCCEEEECCCceEeeeCCHHHHHhcCCCeEEEE--------EECCcchhhh-
Confidence 456788899999999996432 1244566666433 779999999999999998772211 1122222332
Q ss_pred cCCCcccccChhhhhhhhhhhhccceeecc-chhhhHHHHHHHHHHHHHhcCCCCCCCchHHHHHHhhHHH
Q 008635 187 YYGTTKESLPPEIRDALNLYEDRAVKLWRP-VGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSAT 256 (558)
Q Consensus 187 ~pGa~~~~l~p~~k~~~~~~ee~~k~i~~~-~G~iLgaQ~~vg~~gvdkridf~~~~PVLa~ai~~g~~~~ 256 (558)
+++.....+ |+||++ +|++||+|+ +| .+...+|+ +++.++..+.+..
T Consensus 369 ~~~~~~g~~---------------kli~d~~~~~ilG~~~-~g-~~a~e~i~------~~~~ai~~~~t~~ 416 (438)
T PRK07251 369 VNNDLRGAF---------------KVVVNTETKEILGATL-FG-EGSQEIIN------LITMAMDNKIPYT 416 (438)
T ss_pred hcCCCcEEE---------------EEEEECCCCEEEEEEE-EC-CCHHHHHH------HHHHHHHCCCCHH
Confidence 345556677 999965 899999999 88 46888888 7777766666543
No 93
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.62 E-value=0.00058 Score=75.33 Aligned_cols=126 Identities=8% Similarity=-0.049 Sum_probs=79.2
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcc--ccccCcccccccc-ccccccchhhHHhhhc-cc-chhhh
Q 008635 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVF--SSIDQTGGSAGSK-LTNFSTDLKEASSKAT-VA-AVDVL 166 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~--~~~~~~~~~a~~~-~t~~stgl~e~~~~~~-~~-~~~~l 166 (558)
.|+-++|+.... ......|++|||.+++|++++.. ..+.++ .+.+.. ...+++||||+.+++. |+ .+
T Consensus 312 ~IyA~GDv~~~~----~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~-p~~i~~~p~ia~vGlte~~a~~~~g~~~~--- 383 (484)
T TIGR01438 312 YIYAVGDILEDK----QELTPVAIQAGRLLAQRLFSGSTVICDYENV-PTTVFTPLEYGACGLSEEKAVEKFGEENI--- 383 (484)
T ss_pred CEEEEEEecCCC----ccchHHHHHHHHHHHHHHhcCCCcccccccC-CeEEeCCCceeeecCCHHHHHHhcCCCcE---
Confidence 466666665311 12356799999999999996442 235553 333333 7799999999999986 54 23
Q ss_pred hcccccceeeeecCCCceee-cCCC---cccccChhhhhhhhhhhhccceee-cc-chhhhHHHHHHHHHHHHHhcCCCC
Q 008635 167 RNTIVALEESMTNGASFVVY-YYGT---TKESLPPEIRDALNLYEDRAVKLW-RP-VGSALQQQVSVAIEGLERSLGFDP 240 (558)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~y-~pGa---~~~~l~p~~k~~~~~~ee~~k~i~-~~-~G~iLgaQ~~vg~~gvdkridf~~ 240 (558)
++...+.....| ++.. ....+ |+|| ++ +|++||+|+ +|- .....|+
T Consensus 384 --------~~~~~~~~~~~~~~~~~~~~~~g~~---------------Kli~~~~~t~~ILG~~i-vg~-~a~e~I~--- 435 (484)
T TIGR01438 384 --------EVFHSYFWPLEWTIPSRDNSNKCYA---------------KAVCNRKENERVVGFHV-VGP-NAGEVTQ--- 435 (484)
T ss_pred --------EEEEeecchhhhHhhCCCccCCcEE---------------EEEEecCCCCeEEEEEE-ECC-CHHHHHH---
Confidence 122222222222 2322 34556 8898 54 899999999 785 4666777
Q ss_pred CCCchHHHHHHhhHHH
Q 008635 241 NDPIVPFVVFLGTSAT 256 (558)
Q Consensus 241 ~~PVLa~ai~~g~~~~ 256 (558)
.+++++..+.+..
T Consensus 436 ---~~a~ai~~~~t~~ 448 (484)
T TIGR01438 436 ---GFAAALRCGLTKK 448 (484)
T ss_pred ---HHHHHHHcCCCHH
Confidence 7777776666643
No 94
>PTZ00052 thioredoxin reductase; Provisional
Probab=95.15 E-value=0.0054 Score=67.97 Aligned_cols=63 Identities=5% Similarity=-0.084 Sum_probs=42.6
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccc--cCcccccccc-ccccccchhhHHhhhc
Q 008635 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSI--DQTGGSAGSK-LTNFSTDLKEASSKAT 159 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~--~~~~~~a~~~-~t~~stgl~e~~~~~~ 159 (558)
.|+-++|+... ....+..|.+|||++|+|++|+. ..+ ...+.+.+.- ...|++|+||+.+++.
T Consensus 309 ~IyAiGDv~~~----~~~l~~~A~~~g~~aa~ni~g~~-~~~~~~~~~p~~ift~p~ia~vGlte~~A~~~ 374 (499)
T PTZ00052 309 NIFAVGDVVEG----RPELTPVAIKAGILLARRLFKQS-NEFIDYTFIPTTIFTPIEYGACGYSSEAAIAK 374 (499)
T ss_pred CEEEEEEecCC----CcccHHHHHHHHHHHHHHHhCCC-CCcCccccCCeEEecCCcceeecCCHHHHHHh
Confidence 45555664421 11245789999999999999533 222 2334555553 7799999999999987
No 95
>COG2603 Predicted ATPase [General function prediction only]
Probab=95.10 E-value=0.036 Score=57.91 Aligned_cols=101 Identities=23% Similarity=0.234 Sum_probs=59.7
Q ss_pred CCcEEEEeCChhhhhhcCCCcccccccccccCCCc--hhhhhhHHhhhcC-CccchhhH---------HHHHHhhhhccC
Q 008635 286 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYL--PEVGGSVKKLLRG-GRELDDTL---------TAAVIRNLKIVQ 353 (558)
Q Consensus 286 e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL--~eL~~~l~eL~~~-~~~L~~~l---------~aa~i~~Lkgl~ 353 (558)
.+..|||||.|-||..|+.|++. |.|+ ++-+..+....+. .......+ ........+...
T Consensus 14 ~~~~lid~rap~ef~~g~~~ia~--------nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f~ 85 (334)
T COG2603 14 ADTPLIDVRAPIEFENGAMPIAI--------NLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAFQ 85 (334)
T ss_pred cCCceeeccchHHHhcccchhhh--------ccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 46789999999999999999998 7773 1111111111100 01111111 111111112223
Q ss_pred CCcEEEEEeCCCh-hHHHHHHHH-HHcCCCcEEEEcccHHHHHH
Q 008635 354 DRSKVIVMDADGT-RSKGIARSL-RKLGVMVTFLVQGGFQSWVK 395 (558)
Q Consensus 354 kdk~VVVyC~sG~-RS~~AA~~L-~~~GfknVy~LdGG~~aWka 395 (558)
.+.|+-++|..|. ||...+..| ...|++ +--+.||+.+.+.
T Consensus 86 e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalrt 128 (334)
T COG2603 86 EENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALRT 128 (334)
T ss_pred HhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHHH
Confidence 4567767787665 999999999 778874 4456799976643
No 96
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=94.81 E-value=0.04 Score=49.72 Aligned_cols=84 Identities=18% Similarity=0.254 Sum_probs=38.9
Q ss_pred cccCHHHHHHHHhCCCC-cEEEEeCChhhhhhcCCCcc------cccccccccCCCchh--hhhhHHhhhcCCccchhhH
Q 008635 271 GDLSPKSTLELLRGKEN-AVLIDVRHEDLRERDGIPDL------RRGARFRYASVYLPE--VGGSVKKLLRGGRELDDTL 341 (558)
Q Consensus 271 ~~ISp~El~elL~~~e~-avLIDVRsp~Ef~~GHIPGA------v~a~~~~~~nIPL~e--L~~~l~eL~~~~~~L~~~l 341 (558)
+.++++++.++.+ .+ -.||+.|+..|-. +-|.. .......|.++|+.. +... .
T Consensus 13 ~Q~~~~d~~~la~--~GfktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~--------------~ 74 (110)
T PF04273_consen 13 GQPSPEDLAQLAA--QGFKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVDGGAITEE--------------D 74 (110)
T ss_dssp CS--HHHHHHHHH--CT--EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE----TTT--HH--------------H
T ss_pred CCCCHHHHHHHHH--CCCcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecCCCCCCHH--------------H
Confidence 5799999998874 44 4899999875532 22221 112334556777532 1110 0
Q ss_pred HHHHHhhhhccCCCcEEEEEeCCChhHHHHHHH
Q 008635 342 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARS 374 (558)
Q Consensus 342 ~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~ 374 (558)
.......+.. ..+||.+||++|.|+...|.+
T Consensus 75 v~~f~~~l~~--~~~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 75 VEAFADALES--LPKPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp HHHHHHHHHT--TTTSEEEE-SCSHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCEEEECCCChhHHHHHHH
Confidence 1111111222 356999999999999655543
No 97
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=94.00 E-value=0.17 Score=46.79 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=50.0
Q ss_pred cccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcc------cccccccccCCCchhhhhhHHhhhcCCccchhhHHHH
Q 008635 271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL------RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAA 344 (558)
Q Consensus 271 ~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGA------v~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa 344 (558)
+.++++++..+.+ ..=-.+||.|+..|.... |.. .......+.++|+..- .+ .......
T Consensus 13 ~qlt~~d~~~L~~-~GiktVIdlR~~~E~~~~--p~~~~~~~~a~~~gl~y~~iPv~~~--~~----------~~~~v~~ 77 (135)
T TIGR01244 13 PQLTKADAAQAAQ-LGFKTVINNRPDREEESQ--PDFAQIKAAAEAAGVTYHHQPVTAG--DI----------TPDDVET 77 (135)
T ss_pred CCCCHHHHHHHHH-CCCcEEEECCCCCCCCCC--CCHHHHHHHHHHCCCeEEEeecCCC--CC----------CHHHHHH
Confidence 5789999887653 233589999998775432 211 0011234456664310 00 0001111
Q ss_pred HHhhhhccCCCcEEEEEeCCChhHHHHHHHH-HHcCC
Q 008635 345 VIRNLKIVQDRSKVIVMDADGTRSKGIARSL-RKLGV 380 (558)
Q Consensus 345 ~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L-~~~Gf 380 (558)
..+.+. ..++||++||++|.|+..+|.++ ...|.
T Consensus 78 f~~~~~--~~~~pvL~HC~sG~Rt~~l~al~~~~~g~ 112 (135)
T TIGR01244 78 FRAAIG--AAEGPVLAYCRSGTRSSLLWGFRQAAEGV 112 (135)
T ss_pred HHHHHH--hCCCCEEEEcCCChHHHHHHHHHHHHcCC
Confidence 111121 13589999999999987776543 33454
No 98
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=86.26 E-value=0.28 Score=54.37 Aligned_cols=66 Identities=12% Similarity=-0.021 Sum_probs=44.2
Q ss_pred hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccc-cCcccccccc-ccccccchhhHHhhhcccch
Q 008635 93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSI-DQTGGSAGSK-LTNFSTDLKEASSKATVAAV 163 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~-~~~~~~a~~~-~t~~stgl~e~~~~~~~~~~ 163 (558)
|.-.+|++..-+ -..-|..|||++++|++|+..... ...+-.++-- =..++.||+|+++++.|++|
T Consensus 305 IyA~GDV~~~~~-----Lah~A~~eg~iaa~~i~g~~~~~~d~~~iP~~ift~Peia~VGlte~ea~~~g~~~ 372 (454)
T COG1249 305 IYAIGDVIGGPM-----LAHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEAGIDY 372 (454)
T ss_pred EEEeeccCCCcc-----cHhHHHHHHHHHHHHHhCCCCCcCcccCCCEEEECCCcceeeeCCHHHHHhcCCce
Confidence 555566544433 345789999999999995222222 2333333333 44889999999999999876
No 99
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=85.24 E-value=0.17 Score=53.43 Aligned_cols=53 Identities=13% Similarity=0.060 Sum_probs=42.8
Q ss_pred CCcccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhh
Q 008635 269 YSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLL 331 (558)
Q Consensus 269 ~~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~ 331 (558)
|...-+++++.+.+. .....+|+|.+..|..+||||++ ++|...+...+..+.
T Consensus 12 f~~i~~~~~~~~~l~--~~~~~~d~rg~i~~a~egIngti--------s~~~~~~~~~~~~l~ 64 (314)
T PRK00142 12 YTPIEDPEAFRDEHL--ALCKSLGLKGRILVAEEGINGTV--------SGTIEQTEAYMAWLK 64 (314)
T ss_pred cccCCCHHHHHHHHH--HHHHHcCCeeEEEEcCCCceEEE--------EecHHHHHHHHHHHh
Confidence 444567888888775 45779999999999999999999 999877777766554
No 100
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=82.12 E-value=0.5 Score=56.26 Aligned_cols=93 Identities=12% Similarity=-0.034 Sum_probs=61.5
Q ss_pred hhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCccccccCcccccccc---ccccccchhhHHhhhcccchhhhhcc
Q 008635 93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRNT 169 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~---~t~~stgl~e~~~~~~~~~~~~l~~~ 169 (558)
|+-++++.. ..+.+...+..|.+||+++|+|++| ....|++...+...| +.++|.|. ..+.+
T Consensus 276 IYAiGD~a~-~~~~~~gl~~~a~~~a~vaa~~i~g-~~~~~~g~~~~~~lk~~G~~v~s~G~------~~~~~------- 340 (847)
T PRK14989 276 IYAIGECAS-WNNRVFGLVAPGYKMAQVAVDHLLG-SENAFEGADLSAKLKLLGVDVGGIGD------AHGRT------- 340 (847)
T ss_pred EEEeeccee-EcCcccccHHHHHHHHHHHHHHhcC-CCcCCCCcccceEEEECCcceEeccc------ccCCC-------
Confidence 444455432 1234455678899999999999995 677899988887777 56777772 12211
Q ss_pred cccceeeeecCCCc-eeecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHH
Q 008635 170 IVALEESMTNGASF-VVYYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQV 225 (558)
Q Consensus 170 ~~~~~~~~~~~~~~-~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~ 225 (558)
..++ ..|+++...... |+||+ .+++++|+|+
T Consensus 341 ----------~~~~~~~~~~~~~~~y~---------------Klv~~~~~~~LlGa~l 373 (847)
T PRK14989 341 ----------PGARSYVYLDESKEIYK---------------RLIVSEDNKTLLGAVL 373 (847)
T ss_pred ----------CCceeEEEEcCCCCEEE---------------EEEEECCCCEEEEEEE
Confidence 1122 346677667777 88885 4778888866
No 101
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=80.42 E-value=0.52 Score=53.37 Aligned_cols=96 Identities=16% Similarity=0.169 Sum_probs=58.9
Q ss_pred ccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHhhhhc
Q 008635 272 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 351 (558)
Q Consensus 272 ~ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~~Lkg 351 (558)
+|+++++..+ +...++|.|...||.++|+++++ |+|...-+..++.+.... ++..
T Consensus 623 rmsAedl~~~----~~l~v~d~r~~~ef~r~~~s~s~--------nip~~~~ea~l~~~~~l~----------~~~~--- 677 (725)
T KOG1093|consen 623 RISAEDLIWL----KMLYVLDTRQESEFQREHFSDSI--------NIPFNNHEADLDWLRFLP----------GIVC--- 677 (725)
T ss_pred cccHHHHHHH----HHHHHHhHHHHHHHHHhhccccc--------cCCccchHHHHHHhhcch----------HhHH---
Confidence 4666655443 35679999999999999999999 999773333443332110 1111
Q ss_pred cCCCcEEEEEeCCChhHHHHHHHHHHcCCCcEEEEcccHHHH
Q 008635 352 VQDRSKVIVMDADGTRSKGIARSLRKLGVMVTFLVQGGFQSW 393 (558)
Q Consensus 352 l~kdk~VVVyC~sG~RS~~AA~~L~~~GfknVy~LdGG~~aW 393 (558)
...+.++++.....-+.+-...+..+-+.+..++.+|+..+
T Consensus 678 -~~~~~~v~~~~~~K~~~e~~~~~~~mk~p~~cil~~~~~~~ 718 (725)
T KOG1093|consen 678 -SEGKKCVVVGKNDKHAAERLTELYVMKVPRICILHDGFNNI 718 (725)
T ss_pred -hhCCeEEEeccchHHHHHHhhHHHHhcccHHHHHHHHHhhc
Confidence 13455555555444444545555555577777888888744
No 102
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=79.10 E-value=3.8 Score=33.17 Aligned_cols=45 Identities=11% Similarity=0.102 Sum_probs=29.5
Q ss_pred chhhhhchhhhhhHhhhhHHHHHHHHHHHHHHHHHHhhhccCCChHHHH
Q 008635 429 QFLGFGVGCFAVLYVLLEWEKTLQFIAVIGLGQTIYRRVASYNDAEDFK 477 (558)
Q Consensus 429 ~l~g~~~G~~~~~~a~~~~~~~Lq~~g~vG~gl~~a~~l~~~e~~~~~~ 477 (558)
+++|+++.+.+... ...+..++ .+++|+.+++. ++++||....++
T Consensus 14 ~~~G~~l~~~~~~~-~~~~~~~~--~~~~g~~ll~~-g~~g~Cp~~~ll 58 (66)
T PF11127_consen 14 IIIGIVLLALGLLG-LFGSWGWL--LGFVGAMLLVT-GITGFCPLYALL 58 (66)
T ss_pred HHHHHHHHHHHHHh-cccchHHH--HHHHHHHHHHH-HHHCcCHhHHHh
Confidence 45555544333222 22222445 89999998888 999999988876
No 103
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=79.05 E-value=2.4 Score=44.36 Aligned_cols=100 Identities=20% Similarity=0.226 Sum_probs=56.1
Q ss_pred cCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCCcccccccccccCCCchhhhhh-HHh-------hhcCCccchhhHHHH
Q 008635 273 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS-VKK-------LLRGGRELDDTLTAA 344 (558)
Q Consensus 273 ISp~El~elL~~~e~avLIDVRsp~Ef~~GHIPGAv~a~~~~~~nIPL~eL~~~-l~e-------L~~~~~~L~~~l~aa 344 (558)
++.+++.+.+. ..+.+++|+|+ +..||.+|. ++-++.+..+ +.. +.++.....
T Consensus 6 ~s~~wlnr~l~-~~nllllDCRs----es~~i~~A~--------~valPalmlrrl~~g~l~~ra~~p~~~d~~------ 66 (343)
T KOG1717|consen 6 KSVAWLNRQLE-LGNLLLLDCRS----ESSHIESAI--------NVALPALMLRRLTGGNLPVRALFPRSCDDK------ 66 (343)
T ss_pred HHHHHHHhhcc-cCceEEEecCC----ccchhhhhh--------hhcchHHHHHHHhCCCCcceeccCCccccc------
Confidence 56677777774 45789999999 457888887 5555544321 110 111100000
Q ss_pred HHhhhhccCCCcEEEEEeCCCh------hHH----HHHHHHHHcCCCcEEEEcccHHHHHH
Q 008635 345 VIRNLKIVQDRSKVIVMDADGT------RSK----GIARSLRKLGVMVTFLVQGGFQSWVK 395 (558)
Q Consensus 345 ~i~~Lkgl~kdk~VVVyC~sG~------RS~----~AA~~L~~~GfknVy~LdGG~~aWka 395 (558)
..+.-=+..++|.|+.+.. .+. ..-+.++..|+ .+|.|.|||..++.
T Consensus 67 ---~~~~~c~~v~vilyD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~-~a~yL~ggF~~fq~ 123 (343)
T KOG1717|consen 67 ---RFPARCGTVTVILYDESSAEWEEETGAESVLGLLLKKLKDEGC-SARYLSGGFSKFQA 123 (343)
T ss_pred ---cccccCCcceeeecccccccccccchhhhHHHHHHHHHHhcCc-chhhhhcccchhhh
Confidence 0000002357899987621 111 12245677888 59999999977654
No 104
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=78.92 E-value=8.4 Score=36.29 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=18.7
Q ss_pred CcccCHHHHHHHHhCCCCcEEEEeCChhhhhhc
Q 008635 270 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERD 302 (558)
Q Consensus 270 ~~~ISp~El~elL~~~e~avLIDVRsp~Ef~~G 302 (558)
...+++++...+.+ -.=-.+||.|++.|....
T Consensus 27 l~~lt~~d~~~L~~-lgI~tIiDLRs~~E~~~~ 58 (164)
T PF13350_consen 27 LSNLTEADLERLRE-LGIRTIIDLRSPTERERA 58 (164)
T ss_dssp -TT--HHHHHHHHH-TT--EEEE-S-HHHHHHH
T ss_pred cCcCCHHHHHHHHh-CCCCEEEECCCccccccC
Confidence 34688998876652 223489999999998864
No 105
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=75.40 E-value=16 Score=32.59 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=18.7
Q ss_pred CCcEEEEEeCCCh-hHHHH--HHHHHHcCC
Q 008635 354 DRSKVIVMDADGT-RSKGI--ARSLRKLGV 380 (558)
Q Consensus 354 kdk~VVVyC~sG~-RS~~A--A~~L~~~Gf 380 (558)
.+++|+|+|..|. ||..+ ++.++..|+
T Consensus 80 ~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~ 109 (139)
T cd00127 80 KGGKVLVHCLAGVSRSATLVIAYLMKTLGL 109 (139)
T ss_pred cCCcEEEECCCCCchhHHHHHHHHHHHcCC
Confidence 4679999999997 87643 344454554
No 106
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=72.81 E-value=5.5 Score=41.37 Aligned_cols=97 Identities=20% Similarity=0.165 Sum_probs=70.7
Q ss_pred hhhhhhHhhhHhHHHHHhhcCccccccCcccccccc---ccccccchhhHHhhhcccchhhhhcccccceeeeecCCC-c
Q 008635 108 TSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGAS-F 183 (558)
Q Consensus 108 ~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~a~~~---~t~~stgl~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~ 183 (558)
.-....|++++++++.++.+ . ..+.+..+....+ +....+|+++. +..+++ +...+..+.+ +
T Consensus 290 ~~~~~~a~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~----------~~~~~~~~~~~~ 355 (415)
T COG0446 290 IALWAIAVAAGRIAAENIAG-A-LRIPGLLGTVISDVGDLCAASTGLTEG--KERGID----------VVLVVSGGKDPR 355 (415)
T ss_pred eechhhHhhhhHHHHHHhcc-c-cccccccCceEEEEcCeEEEEecCCcc--ccccee----------eeEEEeccCccc
Confidence 34566899999999999995 4 7788888888777 77999999998 444432 1233344444 7
Q ss_pred eeecCCCcccccChhhhhhhhhhhhccceeec-cchhhhHHHHHHHHHHHHHhcC
Q 008635 184 VVYYYGTTKESLPPEIRDALNLYEDRAVKLWR-PVGSALQQQVSVAIEGLERSLG 237 (558)
Q Consensus 184 ~~y~pGa~~~~l~p~~k~~~~~~ee~~k~i~~-~~G~iLgaQ~~vg~~gvdkrid 237 (558)
..|||++..... |.++. ..+.++|+|. .+ ..++++
T Consensus 356 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~---~~-~~~~~~ 391 (415)
T COG0446 356 AHLYPGAELVGI---------------KLVGDADTGRILGGQE---LE-VLKRIG 391 (415)
T ss_pred ccccCCCCeEEE---------------EEEEcCcccceehhhh---HH-HHhhhh
Confidence 888999988888 77885 5899999887 33 444555
No 107
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=72.62 E-value=5.5 Score=34.92 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHhc
Q 008635 447 WEKTLQFIAVIGLGQTIYRRVASYNDAEDFKQDVRLLL 484 (558)
Q Consensus 447 ~~~~Lq~~g~vG~gl~~a~~l~~~e~~~~~~~d~~~~l 484 (558)
...+++++|+.=.+.+.++.++..++|++|.+.++.+-
T Consensus 48 l~~llElvGlgyt~wF~~ryLL~~~~R~el~~~i~~~k 85 (90)
T PF14159_consen 48 LPGLLELVGLGYTGWFVYRYLLFAENRQELLQKIQSLK 85 (90)
T ss_pred hHHHHHHHHHHHHhHHHHHHHcChHhHHHHHHHHHHHH
Confidence 56778999999999999999999999999999998653
No 108
>PLN02777 photosystem I P subunit (PSI-P)
Probab=71.04 E-value=4.5 Score=39.27 Aligned_cols=39 Identities=13% Similarity=0.154 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHhcc
Q 008635 447 WEKTLQFIAVIGLGQTIYRRVASYNDAEDFKQDVRLLLA 485 (558)
Q Consensus 447 ~~~~Lq~~g~vG~gl~~a~~l~~~e~~~~~~~d~~~~l~ 485 (558)
...+||++|+.=.|++.++.|++.++|++|+++++++-.
T Consensus 123 lP~lLELVGigYs~WF~yRyLLfke~ReeL~~ki~~lk~ 161 (167)
T PLN02777 123 VPGVLELVGIGYTGWFAYKNLVFKPDREALIEKIKDTYK 161 (167)
T ss_pred ccchHHHhhhhhhhhhhhhHhcCcccHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999997643
No 109
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.54 E-value=14 Score=34.52 Aligned_cols=86 Identities=21% Similarity=0.291 Sum_probs=46.5
Q ss_pred CcccCHHHHHHHHhCCCC-cEEEEeCChhhhhhcCCCcc------cccccccccCCCch--hhhh-hHHhhhcCCccchh
Q 008635 270 SGDLSPKSTLELLRGKEN-AVLIDVRHEDLRERDGIPDL------RRGARFRYASVYLP--EVGG-SVKKLLRGGRELDD 339 (558)
Q Consensus 270 ~~~ISp~El~elL~~~e~-avLIDVRsp~Ef~~GHIPGA------v~a~~~~~~nIPL~--eL~~-~l~eL~~~~~~L~~ 339 (558)
.++++++++.++-+ .+ ..+|--|+..|= -.=|+. ...+...+.+||.. .+.+ .+..+.
T Consensus 13 sgQi~~~D~~~iaa--~GFksiI~nRPDgEe--~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~-------- 80 (130)
T COG3453 13 SGQISPADIASIAA--LGFKSIICNRPDGEE--PGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQ-------- 80 (130)
T ss_pred cCCCCHHHHHHHHH--hccceecccCCCCCC--CCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHH--------
Confidence 46799999888763 34 468888874432 222321 11223344566642 1211 111110
Q ss_pred hHHHHHHhhhhccCCCcEEEEEeCCChhHHHHHHHHH
Q 008635 340 TLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLR 376 (558)
Q Consensus 340 ~l~aa~i~~Lkgl~kdk~VVVyC~sG~RS~~AA~~L~ 376 (558)
.+ +. .-+.||..||++|.||...+.+-.
T Consensus 81 ---~A----l~--eaegPVlayCrsGtRs~~ly~~~~ 108 (130)
T COG3453 81 ---RA----LD--EAEGPVLAYCRSGTRSLNLYGLGE 108 (130)
T ss_pred ---HH----HH--HhCCCEEeeecCCchHHHHHHHHH
Confidence 00 00 146799999999999977765433
No 110
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=65.87 E-value=7.1 Score=36.85 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=23.9
Q ss_pred CCCcEEEEEe-C----CChhHHHHHHHHHHcCCCcEEEEcccHHHH
Q 008635 353 QDRSKVIVMD-A----DGTRSKGIARSLRKLGVMVTFLVQGGFQSW 393 (558)
Q Consensus 353 ~kdk~VVVyC-~----sG~RS~~AA~~L~~~GfknVy~LdGG~~aW 393 (558)
+++..++++| . .|..-...+.+|+++|..++.+|+||-...
T Consensus 98 ~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs~ 143 (170)
T PF09992_consen 98 TADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSST 143 (170)
T ss_dssp -TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG--
T ss_pred eCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcceE
Confidence 3455665554 4 367778899999999999999999997543
No 111
>PLN02806 complex I subunit
Probab=59.61 E-value=9.5 Score=32.88 Aligned_cols=55 Identities=25% Similarity=0.463 Sum_probs=41.1
Q ss_pred cchhhhhchhhhhh---------HhhhhHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHhcccch
Q 008635 428 VQFLGFGVGCFAVL---------YVLLEWEKTLQFIAVIGLGQTIYRRVASYNDAEDFKQDVRLLLAPVR 488 (558)
Q Consensus 428 l~l~g~~~G~~~~~---------~a~~~~~~~Lq~~g~vG~gl~~a~~l~~~e~~~~~~~d~~~~l~~~~ 488 (558)
..++|+++|+..-+ |.-.||+..+ +.|+|..|.+.+-.+| .++.+||.+.|.-.|
T Consensus 5 ~t~~GA~lGlg~qlysNalRKLP~mrhPWeHV~----~~G~GA~~~n~l~~we--~kL~edldk~L~~~r 68 (81)
T PLN02806 5 ATVVGALLGLGTQLYSNALRKLPLMRHPWEHVL----AMGLGAVFANQLVKWE--VKLKEDLDKMLAKAR 68 (81)
T ss_pred HHHHHHHHHHHHHHHHhHHhhCccccCcHHHHH----HHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 35677777766543 4457899988 7899999998888887 468889988776655
No 112
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=57.14 E-value=28 Score=34.09 Aligned_cols=26 Identities=35% Similarity=0.331 Sum_probs=17.1
Q ss_pred CCcEEEEEeCCCh-hHHH-HHHHHHHcC
Q 008635 354 DRSKVIVMDADGT-RSKG-IARSLRKLG 379 (558)
Q Consensus 354 kdk~VVVyC~sG~-RS~~-AA~~L~~~G 379 (558)
.+++|+++|..|. |+.. ||..|.++|
T Consensus 132 ~g~~V~vHC~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 132 NGRKVLVHCRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp TT--EEEE-SSSSSHHHHHHHHHHHHH-
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 5789999999997 7655 677777766
No 113
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=56.49 E-value=20 Score=38.05 Aligned_cols=69 Identities=10% Similarity=0.096 Sum_probs=44.6
Q ss_pred ccCHHHHHHHHhCCCCcEEEEeCChhhhhh---cCCC-cccccccccccCCCchhhhhhHHhhhcCCccchhhHHHHHHh
Q 008635 272 DLSPKSTLELLRGKENAVLIDVRHEDLRER---DGIP-DLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIR 347 (558)
Q Consensus 272 ~ISp~El~elL~~~e~avLIDVRsp~Ef~~---GHIP-GAv~a~~~~~~nIPL~eL~~~l~eL~~~~~~L~~~l~aa~i~ 347 (558)
.+...++.+.+. ..++.+||+|+..+|.. |||| +.. -+-..|+..+...
T Consensus 137 g~gKt~Ll~~L~-~~~~~VvDlr~~a~hrGs~fG~~~~~~q---------psq~~fe~~L~~~----------------- 189 (311)
T TIGR03167 137 GSGKTELLHALA-NAGAQVLDLEGLANHRGSSFGALGLGPQ---------PSQKRFENALAEA----------------- 189 (311)
T ss_pred CcCHHHHHHHHh-cCCCeEEECCchHHhcCcccCCCCCCCC---------CchHHHHHHHHHH-----------------
Confidence 467778888885 45789999999999997 7887 332 1122333333221
Q ss_pred hhhccCCCcEEEEEeCCChhH
Q 008635 348 NLKIVQDRSKVIVMDADGTRS 368 (558)
Q Consensus 348 ~Lkgl~kdk~VVVyC~sG~RS 368 (558)
+...++.++|++-|.+...+
T Consensus 190 -l~~~~~~~~i~~e~es~~ig 209 (311)
T TIGR03167 190 -LRRLDPGRPIFVEDESRRIG 209 (311)
T ss_pred -HHhCCCCceEEEEeCchhhc
Confidence 11234678999999886533
No 114
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=55.51 E-value=3.8 Score=48.37 Aligned_cols=61 Identities=10% Similarity=0.083 Sum_probs=45.2
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHHHhhcCcc-ccccCcccccccc---ccccccchhhH
Q 008635 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVF-SSIDQTGGSAGSK---LTNFSTDLKEA 154 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~-~~~~~~~~~a~~~---~t~~stgl~e~ 154 (558)
.|+-++++..- .+.+...+..|.+|||.+|+|++| .. ..|.++..+...| +.++|+|..+.
T Consensus 266 ~IyA~GD~a~~-~~~~~gl~~~a~~qa~vaA~ni~g-~~~~~~~~~~~~~~lk~~g~~v~s~G~~~~ 330 (785)
T TIGR02374 266 DIYAVGECAEH-NGRVYGLVAPLYEQAKVLADHICG-VECEEYEGSDLSAKLKLLGVDVWSAGDAQE 330 (785)
T ss_pred CEEEeeeccee-CCcccccHHHHHHHHHHHHHHhcC-CCCcCCCCCccceEEEECCcceEecccCCC
Confidence 35666666532 233444577789999999999995 55 7899999998888 66799997653
No 115
>PLN02727 NAD kinase
Probab=54.91 E-value=30 Score=41.98 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=20.5
Q ss_pred cccCHHHHHHHHhCCCCc-EEEEeCChhh
Q 008635 271 GDLSPKSTLELLRGKENA-VLIDVRHEDL 298 (558)
Q Consensus 271 ~~ISp~El~elL~~~e~a-vLIDVRsp~E 298 (558)
++++++++..+.+ .+. .||+.|+..|
T Consensus 267 gQpspe~la~LA~--~GfKTIINLRpd~E 293 (986)
T PLN02727 267 GQVTEEGLKWLLE--KGFKTIVDLRAEIV 293 (986)
T ss_pred CCCCHHHHHHHHH--CCCeEEEECCCCCc
Confidence 5899999987764 354 8999999776
No 116
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=51.71 E-value=11 Score=34.16 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=30.5
Q ss_pred EEEEeCCCh-hHHHHHHHHHHc----CCCcEEEEcccHHHH
Q 008635 358 VIVMDADGT-RSKGIARSLRKL----GVMVTFLVQGGFQSW 393 (558)
Q Consensus 358 VVVyC~sG~-RS~~AA~~L~~~----GfknVy~LdGG~~aW 393 (558)
|+|+|.... ||..|..+|+++ +..++.+...|+.+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 678998765 999999999888 667899999998766
No 117
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=50.08 E-value=28 Score=33.26 Aligned_cols=50 Identities=24% Similarity=0.308 Sum_probs=34.1
Q ss_pred CCCcEEEEEeCCCh---hHHHHHHHHHHcCCCcEEE--Ecc----------cHHHHHHcCCceecC
Q 008635 353 QDRSKVIVMDADGT---RSKGIARSLRKLGVMVTFL--VQG----------GFQSWVKEGLRIKEL 403 (558)
Q Consensus 353 ~kdk~VVVyC~sG~---RS~~AA~~L~~~GfknVy~--LdG----------G~~aWkaAGLPV~~~ 403 (558)
.+..+|+++|..|. .+..+++.|.+.||+ |.+ +.. -++.+++.|.++...
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 87 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTVYLVGPPEKLSEDAKQQLEILKKMGIKIIEL 87 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEEEEEESSSSTSHHHHHHHHHHHHTT-EEESS
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEEEEEeccccCCHHHHHHHHHHHhcCCcEeec
Confidence 46789999999886 678899999999995 655 322 134666777766653
No 118
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=42.94 E-value=26 Score=31.92 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=29.1
Q ss_pred EEEEeCCCh-hHHHHHHHHHHcCCCcEEEEcccHHHH
Q 008635 358 VIVMDADGT-RSKGIARSLRKLGVMVTFLVQGGFQSW 393 (558)
Q Consensus 358 VVVyC~sG~-RS~~AA~~L~~~GfknVy~LdGG~~aW 393 (558)
|+|+|.... ||..|..+|+++.-.++.+..-|+.+|
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCC
Confidence 578897665 999999999887644688888888877
No 119
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=41.30 E-value=40 Score=34.58 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=24.7
Q ss_pred cEEEEEeCCCh---hHHHHHHHHHHcCCCcEEEE
Q 008635 356 SKVIVMDADGT---RSKGIARSLRKLGVMVTFLV 386 (558)
Q Consensus 356 k~VVVyC~sG~---RS~~AA~~L~~~GfknVy~L 386 (558)
++|+|+|..|+ .+..+|+.|...||+ |.++
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 93 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYE-VTVC 93 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCe-EEEE
Confidence 67999998664 889999999999994 6554
No 120
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=39.32 E-value=39 Score=30.34 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=20.8
Q ss_pred CCCcEEEEEeCCCh-hHHH--HHHHHHHcCCC
Q 008635 353 QDRSKVIVMDADGT-RSKG--IARSLRKLGVM 381 (558)
Q Consensus 353 ~kdk~VVVyC~sG~-RS~~--AA~~L~~~Gfk 381 (558)
..+++|+|+|..|. ||.. +++.+...|++
T Consensus 76 ~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~ 107 (138)
T smart00195 76 KKGGKVLVHCQAGVSRSATLIIAYLMKYRNLS 107 (138)
T ss_pred cCCCeEEEECCCCCchHHHHHHHHHHHHhCCC
Confidence 35789999999997 7754 44555666663
No 121
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=37.91 E-value=1.2e+02 Score=34.27 Aligned_cols=21 Identities=10% Similarity=0.146 Sum_probs=19.2
Q ss_pred cEEEEeCChhhhhhcCCCccc
Q 008635 288 AVLIDVRHEDLRERDGIPDLR 308 (558)
Q Consensus 288 avLIDVRsp~Ef~~GHIPGAv 308 (558)
..+||.|+.++|..||+-.|.
T Consensus 327 FFiVDcRpaeqynaGHlstaF 347 (669)
T KOG3636|consen 327 FFIVDCRPAEQYNAGHLSTAF 347 (669)
T ss_pred EEEEeccchhhcccccchhhh
Confidence 578999999999999998887
No 122
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=35.77 E-value=91 Score=31.39 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=25.2
Q ss_pred CcEEEEEeCCCh---hHHHHHHHHHHcCCCcEEEE
Q 008635 355 RSKVIVMDADGT---RSKGIARSLRKLGVMVTFLV 386 (558)
Q Consensus 355 dk~VVVyC~sG~---RS~~AA~~L~~~GfknVy~L 386 (558)
.++|+|+|..|+ .++.+|+.|...||+ |.++
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v~ 82 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTVL 82 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEEE
Confidence 568999998765 789999999999985 5443
No 123
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=35.31 E-value=1.2e+02 Score=27.20 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=31.3
Q ss_pred CcEEEEEeCCCh----hHHHHHHHHHHcCCCcEEEEccc------HHHHHHcCCce
Q 008635 355 RSKVIVMDADGT----RSKGIARSLRKLGVMVTFLVQGG------FQSWVKEGLRI 400 (558)
Q Consensus 355 dk~VVVyC~sG~----RS~~AA~~L~~~GfknVy~LdGG------~~aWkaAGLPV 400 (558)
+-.+|++|..-. ......+.|++.|+.++.++-|| +..|++.|+.-
T Consensus 50 ~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~ 105 (122)
T cd02071 50 DVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAE 105 (122)
T ss_pred CCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCE
Confidence 345777776543 33455677888999888888887 34577777543
No 124
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=34.78 E-value=57 Score=31.48 Aligned_cols=27 Identities=30% Similarity=0.236 Sum_probs=18.9
Q ss_pred CCcEEEEEeCCCh-hHHH--HHHHHHHcCC
Q 008635 354 DRSKVIVMDADGT-RSKG--IARSLRKLGV 380 (558)
Q Consensus 354 kdk~VVVyC~sG~-RS~~--AA~~L~~~Gf 380 (558)
+.++|+|+|+.|. ||.. +|+.|...|.
T Consensus 104 ~g~kVvVHC~~GigRSgtviaA~lm~~~~~ 133 (180)
T COG2453 104 KGKKVVVHCQGGIGRSGTVIAAYLMLYGGL 133 (180)
T ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHcCC
Confidence 5669999999997 7644 4456665444
No 125
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=34.23 E-value=80 Score=27.65 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=22.1
Q ss_pred CCcEEEEEeCCChhH-HHHHHHHHHcCCC
Q 008635 354 DRSKVIVMDADGTRS-KGIARSLRKLGVM 381 (558)
Q Consensus 354 kdk~VVVyC~sG~RS-~~AA~~L~~~Gfk 381 (558)
.+++++|.-++..++ ...++.|+.+|+.
T Consensus 29 ~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 29 RGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp TTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 468999999998877 6778899999995
No 126
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=32.51 E-value=20 Score=30.41 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=19.6
Q ss_pred CCcccccChhhhhhhhhhhhccceeeccchhhhH
Q 008635 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQ 222 (558)
Q Consensus 189 Ga~~~~l~p~~k~~~~~~ee~~k~i~~~~G~iLg 222 (558)
++|++||+|+......+|++.+ |+.|+-.+.|
T Consensus 3 ~pC~rCl~p~~~~~~~~C~~~G--Vlg~~~giig 34 (84)
T PF05237_consen 3 TPCYRCLFPEPPESAPTCAEAG--VLGPVVGIIG 34 (84)
T ss_dssp ---HHHHHTTSS--TTSSSTS---B-HHHHHHHH
T ss_pred CceehhcCCCCCccCCCccccc--cccchHHHHH
Confidence 5788999999977888899998 7766444545
No 127
>PRK10126 tyrosine phosphatase; Provisional
Probab=32.07 E-value=56 Score=30.47 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=28.6
Q ss_pred cEEEEEeCCCh-hHHHHHHHHHHcCCCcEEEEcccHHHH
Q 008635 356 SKVIVMDADGT-RSKGIARSLRKLGVMVTFLVQGGFQSW 393 (558)
Q Consensus 356 k~VVVyC~sG~-RS~~AA~~L~~~GfknVy~LdGG~~aW 393 (558)
+.|+|+|.... ||..|..+|+.++- ++.+..-|...|
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~~-~~~v~SAG~~~~ 40 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYHP-ELKVESAGLGAL 40 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEeeeccCC
Confidence 47999998665 99999999998763 466677777555
No 128
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=31.80 E-value=66 Score=28.53 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=19.9
Q ss_pred CCcEEEEEeCCCh-hHHH--HHHHHHHcCCC
Q 008635 354 DRSKVIVMDADGT-RSKG--IARSLRKLGVM 381 (558)
Q Consensus 354 kdk~VVVyC~sG~-RS~~--AA~~L~~~Gfk 381 (558)
++.+|+|+|..|. ||.. ++..+...|++
T Consensus 72 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 102 (133)
T PF00782_consen 72 EGGKVLVHCKAGLSRSGAVAAAYLMKKNGMS 102 (133)
T ss_dssp TTSEEEEEESSSSSHHHHHHHHHHHHHHTSS
T ss_pred ccceeEEEeCCCcccchHHHHHHHHHHcCCC
Confidence 6789999999998 7755 33444556663
No 129
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=31.27 E-value=85 Score=28.40 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=27.5
Q ss_pred EEEEEeCCCh-hHHHHHHHHHHcCCCcEEEEcccHH
Q 008635 357 KVIVMDADGT-RSKGIARSLRKLGVMVTFLVQGGFQ 391 (558)
Q Consensus 357 ~VVVyC~sG~-RS~~AA~~L~~~GfknVy~LdGG~~ 391 (558)
+|+|+|.... ||..|..+|+.++-.++.+...|..
T Consensus 2 ~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~ 37 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLE 37 (126)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCC
Confidence 6899997665 9999999999877556777777753
No 130
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=29.68 E-value=1.2e+02 Score=29.91 Aligned_cols=32 Identities=31% Similarity=0.461 Sum_probs=25.6
Q ss_pred CCcEEEEEeCCCh---hHHHHHHHHHHcCCCcEEEE
Q 008635 354 DRSKVIVMDADGT---RSKGIARSLRKLGVMVTFLV 386 (558)
Q Consensus 354 kdk~VVVyC~sG~---RS~~AA~~L~~~GfknVy~L 386 (558)
+.++|+|+|..|+ .+..+||.|...|+ +|+.+
T Consensus 44 ~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v-~V~~~ 78 (205)
T TIGR00197 44 LAGHVIIFCGPGNNGGDGFVVARHLKGFGV-EVFLL 78 (205)
T ss_pred CCCeEEEEECCCCCccHHHHHHHHHHhCCC-EEEEE
Confidence 4578999998764 88999999988777 47765
No 131
>PRK10565 putative carbohydrate kinase; Provisional
Probab=28.94 E-value=83 Score=35.66 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=25.2
Q ss_pred CCcEEEEEeCCCh---hHHHHHHHHHHcCCCcEEEE
Q 008635 354 DRSKVIVMDADGT---RSKGIARSLRKLGVMVTFLV 386 (558)
Q Consensus 354 kdk~VVVyC~sG~---RS~~AA~~L~~~GfknVy~L 386 (558)
+.++|+|+|..|+ .+..+|+.|.+.||+ |.++
T Consensus 59 ~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~~-V~v~ 93 (508)
T PRK10565 59 DARHWLVLCGHGNNGGDGYVVARLAQAAGID-VTLL 93 (508)
T ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHCCCc-eEEE
Confidence 3567999998765 788999999999995 5443
No 132
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=28.57 E-value=81 Score=35.40 Aligned_cols=44 Identities=14% Similarity=0.168 Sum_probs=31.5
Q ss_pred cEEEEEeCCCh---hHHHHHHHHHHcCCCcEEEE-cc----c-----HHHHHHcCCce
Q 008635 356 SKVIVMDADGT---RSKGIARSLRKLGVMVTFLV-QG----G-----FQSWVKEGLRI 400 (558)
Q Consensus 356 k~VVVyC~sG~---RS~~AA~~L~~~GfknVy~L-dG----G-----~~aWkaAGLPV 400 (558)
++|+|+|..|+ .+..+|+.|...||+ |.++ -+ + +..|+..|.++
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~-V~v~~~~~~~~~~~~~~~~~~~~~g~~~ 116 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHHFGYK-PSICYPKRTDKPLYNGLVTQLESLSVPF 116 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCc-eEEEEECCCCCHHHHHHHHHHHHcCCce
Confidence 67999998775 778999999999995 5443 12 1 34566666554
No 133
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=27.73 E-value=84 Score=27.12 Aligned_cols=55 Identities=7% Similarity=0.202 Sum_probs=35.9
Q ss_pred cchhccccchhHHHhhhhhhhhhhhhhhhhHHHhhHhhhhhhhhhHhhhHhHHHH
Q 008635 69 SSISNIKSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVD 123 (558)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d 123 (558)
+.|..++.+++++.....+..+..+.+..+-+++.++.++..+..+..+++.-+.
T Consensus 5 ~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~ 59 (94)
T PF05957_consen 5 AELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAR 59 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777777777777777666666655544444433
No 134
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=26.98 E-value=76 Score=29.65 Aligned_cols=37 Identities=22% Similarity=0.132 Sum_probs=28.3
Q ss_pred cEEEEEeCCCh-hHHHHHHHHHHcCCCcEEEEcccHHHH
Q 008635 356 SKVIVMDADGT-RSKGIARSLRKLGVMVTFLVQGGFQSW 393 (558)
Q Consensus 356 k~VVVyC~sG~-RS~~AA~~L~~~GfknVy~LdGG~~aW 393 (558)
++|+|+|.... ||..|..+|+.+.- ++.+...|..+|
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~-~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLP-GVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEcccccCC
Confidence 37999997654 99999999987653 466777787665
No 135
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=26.95 E-value=4.5e+02 Score=24.36 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=36.7
Q ss_pred CCcEEEEEeCCCh----hHHHHHHHHHHcCCCcEEEEccc------HHHHHHcCCceecCCc
Q 008635 354 DRSKVIVMDADGT----RSKGIARSLRKLGVMVTFLVQGG------FQSWVKEGLRIKELKS 405 (558)
Q Consensus 354 kdk~VVVyC~sG~----RS~~AA~~L~~~GfknVy~LdGG------~~aWkaAGLPV~~~~~ 405 (558)
.+-.+|++|..-. .-......|++.|..++.++-|| +..|++.|..-.-.+.
T Consensus 52 ~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~g 113 (132)
T TIGR00640 52 ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIFGPG 113 (132)
T ss_pred cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEECCC
Confidence 4567899987543 34556777888898788888898 4678888875444333
No 136
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=25.98 E-value=96 Score=35.68 Aligned_cols=44 Identities=18% Similarity=0.239 Sum_probs=31.6
Q ss_pred cEEEEEeCCCh---hHHHHHHHHHHcCCCcEEEEc-----cc-----HHHHHHcCCce
Q 008635 356 SKVIVMDADGT---RSKGIARSLRKLGVMVTFLVQ-----GG-----FQSWVKEGLRI 400 (558)
Q Consensus 356 k~VVVyC~sG~---RS~~AA~~L~~~GfknVy~Ld-----GG-----~~aWkaAGLPV 400 (558)
++|+|+|..|+ .+..+|+.|...||+ |.++- .. +..|+..|.++
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 67999998775 678899999999995 55542 22 24566667554
No 137
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=25.14 E-value=63 Score=29.54 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=28.7
Q ss_pred EEEEEeCCCh-hHHHHHHHHHHcCCC-cEEEEcccHHHH
Q 008635 357 KVIVMDADGT-RSKGIARSLRKLGVM-VTFLVQGGFQSW 393 (558)
Q Consensus 357 ~VVVyC~sG~-RS~~AA~~L~~~Gfk-nVy~LdGG~~aW 393 (558)
+|+|+|.... ||..|..+|+++.-+ ++.+...|+..+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 6899998765 999999999876543 677888887543
No 138
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=24.23 E-value=1.3e+02 Score=31.44 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=15.1
Q ss_pred CCcEEEEEeCCChhHHH-HHHHHHHcC
Q 008635 354 DRSKVIVMDADGTRSKG-IARSLRKLG 379 (558)
Q Consensus 354 kdk~VVVyC~sG~RS~~-AA~~L~~~G 379 (558)
++.+++|.-+++.|+.. .+..|..+|
T Consensus 39 ~g~~~iflTNn~~~s~~~~~~~L~~~~ 65 (269)
T COG0647 39 AGKPVIFLTNNSTRSREVVAARLSSLG 65 (269)
T ss_pred cCCeEEEEeCCCCCCHHHHHHHHHhhc
Confidence 35667776666665555 555555533
No 139
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=23.71 E-value=2.3e+02 Score=27.15 Aligned_cols=73 Identities=21% Similarity=0.264 Sum_probs=40.5
Q ss_pred hhccCCCcEEEEEeCCCh--hHHHHHHHHHH---cCCCcEEEEcccHHHH-----HHcCCceecCCccchhhhhh-hhHH
Q 008635 349 LKIVQDRSKVIVMDADGT--RSKGIARSLRK---LGVMVTFLVQGGFQSW-----VKEGLRIKELKSETALTILN-EDAE 417 (558)
Q Consensus 349 Lkgl~kdk~VVVyC~sG~--RS~~AA~~L~~---~GfknVy~LdGG~~aW-----kaAGLPV~~~~~~~al~i~~-e~~~ 417 (558)
++.++++..+|+.|..|. .|...|..|.. .|..++..+-||-.++ +.+...+.-.+-+.|-++.+ -..|
T Consensus 61 l~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~~~~~~~~a~~~lSLS~mTfpH~larlvL~E 140 (155)
T PF02590_consen 61 LKKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGLSEEVRKRADEKLSLSKMTFPHQLARLVLLE 140 (155)
T ss_dssp HCTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB--HHHHHH-SEEEES-SS---HHHHHHHHHH
T ss_pred HhhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHHhhcCceEEEecCCCcHHHHHHHHHH
Confidence 344557888999999986 78888888755 6888899999976433 23444554444445555444 3344
Q ss_pred HHHh
Q 008635 418 AILE 421 (558)
Q Consensus 418 ~I~~ 421 (558)
||=|
T Consensus 141 QiYR 144 (155)
T PF02590_consen 141 QIYR 144 (155)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 140
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=22.99 E-value=67 Score=34.40 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=30.4
Q ss_pred cccCHHHHHHHHhC-----CCCcEEEEeCChhhhhhcCCCccc
Q 008635 271 GDLSPKSTLELLRG-----KENAVLIDVRHEDLRERDGIPDLR 308 (558)
Q Consensus 271 ~~ISp~El~elL~~-----~e~avLIDVRsp~Ef~~GHIPGAv 308 (558)
..++++++.++++. +.+.+|||||++. |+..++|+-+
T Consensus 277 ~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~gr 318 (339)
T PRK07688 277 EEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDGR 318 (339)
T ss_pred CccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCCC
Confidence 46999999988832 3578999999988 9999999765
No 141
>PRK13530 arsenate reductase; Provisional
Probab=21.82 E-value=1.6e+02 Score=27.13 Aligned_cols=35 Identities=9% Similarity=-0.050 Sum_probs=26.7
Q ss_pred cEEEEEeCCCh-hHHHHHHHHHHcCCCcEEEEcccH
Q 008635 356 SKVIVMDADGT-RSKGIARSLRKLGVMVTFLVQGGF 390 (558)
Q Consensus 356 k~VVVyC~sG~-RS~~AA~~L~~~GfknVy~LdGG~ 390 (558)
+.|+|+|.... ||..|..+++.+.-.++.+...|.
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~ 39 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGI 39 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCC
Confidence 57999997665 999999888876544677777775
No 142
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=21.38 E-value=90 Score=30.02 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=24.7
Q ss_pred CCcEEEEEeCCCh-hHHHHHHHHHHc-CCCcEEEEcccHHHHHH
Q 008635 354 DRSKVIVMDADGT-RSKGIARSLRKL-GVMVTFLVQGGFQSWVK 395 (558)
Q Consensus 354 kdk~VVVyC~sG~-RS~~AA~~L~~~-GfknVy~LdGG~~aWka 395 (558)
.+.||+++|..|. |+..+.-.||+. |. .+..=+..++.
T Consensus 90 ~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W----~~~~i~~Ey~~ 129 (164)
T PF03162_consen 90 RNYPVLIHCNHGKDRTGLVVGCLRKLQGW----SLSSIFDEYRR 129 (164)
T ss_dssp GG-SEEEE-SSSSSHHHHHHHHHHHHTTB-----HHHHHHHHHH
T ss_pred CCCCEEEEeCCCCcchhhHHHHHHHHcCC----CHHHHHHHHHH
Confidence 4679999999997 888888778753 44 24444556654
No 143
>PRK12361 hypothetical protein; Provisional
Probab=20.77 E-value=1.4e+02 Score=33.77 Aligned_cols=17 Identities=35% Similarity=0.221 Sum_probs=14.0
Q ss_pred CCcEEEEEeCCCh-hHHH
Q 008635 354 DRSKVIVMDADGT-RSKG 370 (558)
Q Consensus 354 kdk~VVVyC~sG~-RS~~ 370 (558)
.+.+|+|+|..|. ||..
T Consensus 174 ~~~~VlVHC~~G~sRSa~ 191 (547)
T PRK12361 174 ANKSVVVHCALGRGRSVL 191 (547)
T ss_pred CCCeEEEECCCCCCcHHH
Confidence 5679999999997 7754
No 144
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=20.69 E-value=1.2e+02 Score=28.53 Aligned_cols=37 Identities=22% Similarity=0.116 Sum_probs=29.6
Q ss_pred cEEEEEeCCCh-hHHHHHHHHHHcCCCcEEEEcccHHH
Q 008635 356 SKVIVMDADGT-RSKGIARSLRKLGVMVTFLVQGGFQS 392 (558)
Q Consensus 356 k~VVVyC~sG~-RS~~AA~~L~~~GfknVy~LdGG~~a 392 (558)
.+|+|+|.... ||..|-.+++++.-.++.+.+.|..+
T Consensus 3 ~kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt~~ 40 (139)
T COG0394 3 MKVLFVCTGNICRSPMAEALLRHLAPDNVEVDSAGTGG 40 (139)
T ss_pred ceEEEEcCCCcccCHHHHHHHHHhccCCeEEECCccCC
Confidence 47999998654 99999999987755788888888543
Done!