BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008636
(558 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 230 bits (586), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 174/537 (32%), Positives = 262/537 (48%), Gaps = 40/537 (7%)
Query: 19 FIERAAT--ACDDCPSIIYNDTTY--TWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNI 74
F+ERAA + S ++ + T+++ Y+R +L L + G+ G V+ + N
Sbjct: 23 FLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNH 82
Query: 75 PAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHXXXXXXXXXXXXFPP 134
E +FAVP GA+ +T N RL + I+ IL H+E K++ D
Sbjct: 83 FRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGEL-- 140
Query: 135 HSKTPKLVLITDDKEXXXXXXXXXXXXXADFVDTYENMLAKGDPQFSWVR-PKSDLDPMV 193
KT + ++ D+K ++ E + + DP VR P+ M
Sbjct: 141 --KTVQHFVVMDEK------------APEGYLAYEEALGEEADP----VRVPERAACGMA 182
Query: 194 LNYTWGTTSAPKGVVQCYKAFFIIAVD-SLIDW-VVPKQSVLLWTLPMFHNNGWSFTWGA 251
YT GTT PKGVV ++A + ++ SL+D + ++ V+L +PMFH N W + A
Sbjct: 183 --YTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAA 240
Query: 252 AVVGATNVCLR-KFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEA--KQLDRPVRILT 308
+VGA V + D ++ L GVT G P V L+ E+ +L R++
Sbjct: 241 TLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVV 300
Query: 309 AGSPPPAPVLLRTESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVR 368
GS P ++ R E +G V GYG TE + V V K L E+ +LKA+ G+
Sbjct: 301 GGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGL- 359
Query: 369 TIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCMK-DGRYYTGD 427
I L + + D E G V +DG+ GE+ ++G + GY + EAT + DG + TGD
Sbjct: 360 PIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGD 418
Query: 428 VGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPC 487
+ + +GY+EIKDR KD+I SGGE ISS ++E+ L HP V EAAVV P P WQE P
Sbjct: 419 IAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPL 478
Query: 488 AFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVL 544
A V G T E+ +A ++ +P VF +E+P+T+ GK K L
Sbjct: 479 AVV-----VPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRAL 530
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 199 bits (506), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 164/513 (31%), Positives = 234/513 (45%), Gaps = 49/513 (9%)
Query: 36 NDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTIN 95
D T++Q + A L++ GI G V+++ PN L + GA+ IN
Sbjct: 40 TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPIN 99
Query: 96 TRLDARTISIILKHSESKLVFVDHXXXXXXXXXXXXFPPHSKTPKLVLITDDKEXXXXXX 155
TRL A +S IL S SK+V P +I +
Sbjct: 100 TRLAAPEVSFILSDSGSKVVIYG-------------------APSAPVIDAIRAQADPPG 140
Query: 156 XXXXXXXADFVDTYENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFF 215
AD + A +P V D D + + YT GTT PKGVV +++
Sbjct: 141 TVTDWIGADSLAERLRSAAADEPA---VECGGD-DNLFIMYTSGTTGHPKGVVHTHESVH 196
Query: 216 IIAVD--SLIDWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVCLRKFDAPTVFALI 273
A S ID V + LL LPMFH + +A+ G T + + +FDA V++LI
Sbjct: 197 SAASSWASTID--VRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLI 254
Query: 274 RKHGVTHMCGAPIVLNLLSSSPEAKQLDRP--VRILTAGSPPPAPVLLRTESLGFIVSHG 331
+ V P +LN + PE +LD P +T G+P P ++ + V G
Sbjct: 255 VEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNIEVVQG 314
Query: 332 YGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQ 391
Y TE SC L E A KA R T+V V + G+ ++ G+
Sbjct: 315 YALTE------SCGG----GTLLLSEDALRKAGSAGRATMFTDV-AVRGDDGV-IREHGE 362
Query: 392 TRGEIVMRGGSLMLGYLKDPEATSKCMKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGG 451
GE+V++ L+ Y PEAT +G + TGD+G + +GYL IKDR KD+IISGG
Sbjct: 363 --GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGG 420
Query: 452 ENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQY 511
EN+ EIESV+ P V+E AV+G PD W EI A V +E+ I++Y
Sbjct: 421 ENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNE------VSEQQIVEY 474
Query: 512 CRARIPRYMVPKTVVFIDELPKTATGKVQKYVL 544
C R+ RY +PK V+F + +P+ TGK+ K VL
Sbjct: 475 CGTRLARYKLPKKVIFAEAIPRNPTGKILKTVL 507
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 151/525 (28%), Positives = 229/525 (43%), Gaps = 53/525 (10%)
Query: 36 NDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTIN 95
N YT++ ++AS L+ GI G V+ + P+ P GAI N
Sbjct: 46 NGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAAN 105
Query: 96 TRLDARTISIILKHSESKLVFVDHXXXXXXXXXXXXFPPHSKTPKLVLITDDKEXXXXXX 155
++ K S +KL+ + K +D K
Sbjct: 106 PFSTPAELAKHAKASRAKLLITQACY-------------YEKVKDFARESDVKVMCVDSA 152
Query: 156 XXXXXXXADFVDTYENMLAKGDPQFSWVRPKSDLDP---MVLNYTWGTTSAPKGVVQCYK 212
++ EN P+ D+ P + L Y+ GTT PKGV+ +K
Sbjct: 153 PDGCLHFSELTQADENE-----------APQVDISPDDVVALPYSSGTTGLPKGVMLTHK 201
Query: 213 AFFIIAVDSLIDWVVPK-----QSVLLWTLPMFHNNGW-SFTWGAAVVGATNVCLRKFDA 266
I +V +D P + V+L LPMFH S VGA + + KF+
Sbjct: 202 GL-ITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEI 260
Query: 267 PTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQLD-RPVRILTAGSPPPAPVLLRTESLG 325
++ LI K+ V+ P V+ ++ SP+ + D +R++ +G P L T
Sbjct: 261 GSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAK 320
Query: 326 F---IVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPET 382
F + GYG TE V C A+E +K + E+ IVDPET
Sbjct: 321 FPQARLGQGYGMTEAGPVLAMCLAF-------AKEPFDIKPGACGTVVRNAEMKIVDPET 373
Query: 383 GLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCM-KDGRYYTGDVGMMHPDGYLEIKD 441
G S+ R+ GEI +RG +M GYL DPEATS+ + K+G +TGD+G + D L I D
Sbjct: 374 GASLPRN--QPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVD 431
Query: 442 RSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGM 501
R K++I G ++ E+E++L +HP +++AAVVG D E+P AFV S
Sbjct: 432 RLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFV-----VKSEKS 486
Query: 502 MTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGD 546
TE +I QY ++ Y K V FI+ +PK +GK+ + L +
Sbjct: 487 QATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKE 531
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 140/524 (26%), Positives = 213/524 (40%), Gaps = 49/524 (9%)
Query: 22 RAATACDDCPSIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELH 81
R A D + + + T R +LAS L G++ G V++++ N M EL
Sbjct: 14 RNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELI 73
Query: 82 FAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHXXXXXXXXXXXXFPPHSKTPKL 141
AV + GAI +N RL+A I+ +L +V P K
Sbjct: 74 GAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAG---TDYRDIVAGVLPSLGGVKKA 130
Query: 142 VLITDDKEXXXXXXXXXXXXXADFVDTYENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTT 201
I D A F D + P+F D V+ +T
Sbjct: 131 YAIGDGS-----------GPFAPFKDLASDTPFSA-PEFGAA------DGFVIIHTAAVG 172
Query: 202 SAPKGVVQCYKAFFIIAVDSLID-WVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVC 260
P+G + + +IA SL+D W + + V L LP+FH G G +V
Sbjct: 173 GRPRGAL-ISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVI 231
Query: 261 LRKFDAPTVFALIRKHGVTHMCG-APIVLNLLSSSPEAKQLDRPVRILTAGSPPPAPVLL 319
KFD I H VT M AP++ N+L + A+ +R +T P
Sbjct: 232 AAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLAS--LRAVTGLDTPETIERF 289
Query: 320 RTESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVD 379
+G++E +G++ P R+R + R + V +VD
Sbjct: 290 EATCPNATFWATFGQSETSGLSTFA---------PYRDRP----KSAGRPLFWRTVAVVD 336
Query: 380 PETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCMKDGRYYTGDVGMMHPDGYLEI 439
E G+ GEIV+RG ++ GY + AT ++G ++TGD+G DGYL
Sbjct: 337 AED--RPLPPGEV-GEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFY 393
Query: 440 KDRS--KDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTD 497
R+ K++I +GGEN+ E+E L HP + +A V+G PDP W E A K G
Sbjct: 394 AGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGES 453
Query: 498 SGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQK 541
+ ++ + I RY PK VVF++ LPK A G + +
Sbjct: 454 -----IAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDR 492
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 141/533 (26%), Positives = 233/533 (43%), Gaps = 58/533 (10%)
Query: 40 YTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLD 99
YT+S + Q+A++ G+N VV ++ PN P A GA N
Sbjct: 89 YTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFT 148
Query: 100 ARTISIILKHSESKLVFVDHXXXXXXXXXXXXFPPHSKTPKLVLITDDKEXX-------- 151
I+ K S +KL+ + P + +++ DD E
Sbjct: 149 PAEIAKQAKASNTKLIITEARYVDKIK------PLQNDDGVVIVCIDDNESVPIPEGCLR 202
Query: 152 XXXXXXXXXXXADFVDTYENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCY 211
++ +D+ E + P D + L Y+ GTT PKGV+ +
Sbjct: 203 FTELTQSTTEASEVIDSVE------------ISPD---DVVALPYSSGTTGLPKGVMLTH 247
Query: 212 KAFFIIAVDSLIDWVVPK-----QSVLLWTLPMFHNNGW-SFTWGAAVVGATNVCLRKFD 265
K + +V +D P V+L LPMFH S VGA + + KF+
Sbjct: 248 KGL-VTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFE 306
Query: 266 APTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQLD-RPVRILTAGSPPPAPVLLRTESL 324
+ LI++ VT P ++ ++ S E ++ D +R++ +G+ P L +
Sbjct: 307 INLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNA 366
Query: 325 GF---IVSHGYGKTEIAGV-NVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDP 380
F + GYG TE V +S + A+E +K+ + E+ IVDP
Sbjct: 367 KFPNAKLGQGYGMTEAGPVLAMSLGF--------AKEPFPVKSGACGTVVRNAEMKIVDP 418
Query: 381 ETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCM-KDGRYYTGDVGMMHPDGYLEI 439
+TG S+ R+ GEI +RG +M GYL +P AT++ + KDG +TGD+G++ D L I
Sbjct: 419 DTGDSLSRN--QPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFI 476
Query: 440 KDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSG 499
DR K++I G ++ E+E++L HP + + AVV + E+P AFV S
Sbjct: 477 VDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFV-----VKSK 531
Query: 500 GMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKV-QKYVLGDIANSM 551
+E D+ Q+ ++ Y V F + +PK +GK+ +K + +AN +
Sbjct: 532 DSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGL 584
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 128/520 (24%), Positives = 226/520 (43%), Gaps = 54/520 (10%)
Query: 37 DTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTI-- 94
+ T+++ + ++LA ++ +G+N H + V + N L F +P+ GA+F +
Sbjct: 53 EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSEN-----SLQFFMPVLGALFIGVAV 107
Query: 95 ---NTRLDARTISIILKHSESKLVFVDHXXXXXXXXXXXXFPPHSKTPKLVLITDDKEXX 151
N + R + + S+ +VFV P K ++I D K
Sbjct: 108 APANDCYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQK----IIIMDSKTDY 163
Query: 152 XXXXXXXXXXXADFVDTYENMLAKGDPQFSWVRPKSDLD---PMVLNYTWGTTSAPKGVV 208
FV ++ L G ++ +V D D +++N + G+T PKGV
Sbjct: 164 QGFQSMYT-----FVTSH---LPPGFNEYDFVPESFDRDKTIALIMN-SSGSTGLPKGVA 214
Query: 209 QCYKAF---FIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVCLRKFD 265
++A F A D + + + +L +P H G T G + G V + +F+
Sbjct: 215 LPHRALAVRFSHARDPIFGNQIAPDTAILSVVPFHHGFGMFTTLGYLISGFRVVLMYRFE 274
Query: 266 APTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQLD-RPVRILTAGSPPPAPVLLRTESL 324
++ + + P + + L+ S + D + + +G P + + +
Sbjct: 275 EELFLRSLQDYKIQSALLVPTLFSFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK 334
Query: 325 GFI---VSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPE 381
F + GYG TE + PK + P + + E +VD +
Sbjct: 335 RFHLPGIRQGYGLTETTS---AILITPKGDDKPGAVG---------KVVPFFEAKVVDLD 382
Query: 382 TGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCM-KDGRYYTGDVGMMHPDGYLEIK 440
TG ++ + RGE+ +RG +M GY+ +PEAT+ + KDG ++GD+ D + I
Sbjct: 383 TGKTLGVN--QRGELSVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIV 440
Query: 441 DRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGG 500
DR K +I G ++ E+ES+L HP + +A V G PD E+P A V L+ G
Sbjct: 441 DRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK---- 496
Query: 501 MMTTEKDIIQYCRARIPR-YMVPKTVVFIDELPKTATGKV 539
TEK+I+ Y +++ + VVF+DE+PK TGK+
Sbjct: 497 -TMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKL 535
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 124/522 (23%), Positives = 221/522 (42%), Gaps = 53/522 (10%)
Query: 35 YNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTI 94
+ + T+S+ + +LA ++ +G+ H ++V + N L F +P+ GA+F +
Sbjct: 80 HAEVNITYSEYFEMACRLAETMKRYGLGLQHHIAVCSEN-----SLQFFMPVCGALFIGV 134
Query: 95 -----NTRLDARTISIILKHSESKLVFVDHXXXXXXXXXXXXFPPHSKTPKLVLITDDKE 149
N + R + L S+ +VF P K ++I D +E
Sbjct: 135 GVAPTNDIYNERELYNSLSISQPTIVFCSKRALQKILGVQKKLPIIQK----IVILDSRE 190
Query: 150 XXXXXXXXXXXXXADFVDTYENMLAKGDPQFSWVRPKSDLD---PMVLNYTWGTTSAPKG 206
F++++ L G ++ ++ D + +++N + G+T PKG
Sbjct: 191 DYMGKQSMY-----SFIESH---LPAGFNEYDYIPDSFDRETATALIMN-SSGSTGLPKG 241
Query: 207 VVQCYKAF---FIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVCLRK 263
V +K F D + + + +L +P H G T G G V + +
Sbjct: 242 VELTHKNICVRFSHCRDPVFGNQIIPDTAILTVIPFHHGFGMFTTLGYLTCGFRIVLMYR 301
Query: 264 FDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQLD-RPVRILTAGSPPPAPVLLRTE 322
F+ ++ + + P + + + S + D + + +G P A +
Sbjct: 302 FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLVDKYDLSNLHEIASGGAPLAKEVGEAV 361
Query: 323 SLGFI---VSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVD 379
+ F + GYG TE + + R R G + + IVD
Sbjct: 362 AKRFKLPGIRQGYGLTETTSAII----------ITPRGRDDKPGACG-KVVPFFSAKIVD 410
Query: 380 PETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCM-KDGRYYTGDVGMMHPDGYLE 438
+TG ++ + RGE+ ++G +M GY+ +PEATS + KDG ++GD+ DGY
Sbjct: 411 LDTGKTLGVN--QRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAYYDKDGYFF 468
Query: 439 IKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDS 498
I DR K +I G + E+ES+L HP + +A V G PDP E+P A V L+ G
Sbjct: 469 IVDRLKSLIKYKGYQVPPAELESILLQHPFIFDAGVAGIPDPDAGELPAAVVVLEEGK-- 526
Query: 499 GGMMTTEKDIIQYCRARI-PRYMVPKTVVFIDELPKTATGKV 539
TE++++ Y ++ + V F+DE+PK TGK+
Sbjct: 527 ---TMTEQEVMDYVAGQVTASKRLRGGVKFVDEVPKGLTGKI 565
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/353 (27%), Positives = 166/353 (47%), Gaps = 41/353 (11%)
Query: 196 YTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVG 255
+T GTT K V Q ++ + A+ + + L LP++H +G S A + G
Sbjct: 170 FTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEG 229
Query: 256 ATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQLDRPV---RILTAGSP 312
T + KF+A + +I+ +TH+ P LN L + L P +IL G+
Sbjct: 230 FTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQ----QGLHEPYNLQKILLGGAK 285
Query: 313 PPAPVLLRTESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGL 372
A ++ + + +G TE +C+ + L AR T+G+
Sbjct: 286 LSATMIETALQYNLPIYNSFGMTE------TCS------QFLTATPEMLHARPD--TVGM 331
Query: 373 ----TEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCMKDGRYYTGDV 428
+V I +P + + GE++++G ++M GYL P + ++G + TGD+
Sbjct: 332 PSANVDVKIKNP--------NKEGHGELMIKGANVMNGYLY-PTDLTGTFENGYFNTGDI 382
Query: 429 GMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCA 488
+ +GY+ I DR KD+IISGGENI +IE+V P +++A VG PD W ++P
Sbjct: 383 AEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKL 442
Query: 489 FVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQK 541
+ ++ ++ +I Y + +Y VPK +D LP T+TGK+Q+
Sbjct: 443 YFVSESD-------ISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQR 488
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 125/520 (24%), Positives = 224/520 (43%), Gaps = 54/520 (10%)
Query: 37 DTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTI-- 94
+ T+++ + ++LA ++ +G+N H + V + N L F +P+ GA+F +
Sbjct: 53 EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSEN-----SLQFFMPVLGALFIGVAV 107
Query: 95 ---NTRLDARTISIILKHSESKLVFVDHXXXXXXXXXXXXFPPHSKTPKLVLITDDKEXX 151
N + R + + S+ +VFV P K ++I D K
Sbjct: 108 APANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQK----IIIMDSKTDY 163
Query: 152 XXXXXXXXXXXADFVDTYENMLAKGDPQFSWVRPKSDLD---PMVLNYTWGTTSAPKGVV 208
FV ++ L G ++ +V D D +++N + G+T PKGV
Sbjct: 164 QGFQSMYT-----FVTSH---LPPGFNEYDFVPESFDRDKTIALIMN-SSGSTGLPKGVA 214
Query: 209 QCYKAF---FIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVCLRKFD 265
++ F A D + + + +L +P H G T G + G V + +F+
Sbjct: 215 LPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFE 274
Query: 266 APTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQLD-RPVRILTAGSPPPAPVLLRTESL 324
++ + + P + + + S + D + + +G P + + +
Sbjct: 275 EELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK 334
Query: 325 GFI---VSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPE 381
F + GYG TE + P+ + P + + E +VD +
Sbjct: 335 RFHLPGIRQGYGLTETTS---AILITPEGDDKPGAVG---------KVVPFFEAKVVDLD 382
Query: 382 TGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCM-KDGRYYTGDVGMMHPDGYLEIK 440
TG ++ + RGE+ +RG +M GY+ +PEAT+ + KDG ++GD+ D + I
Sbjct: 383 TGKTLGVN--QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIV 440
Query: 441 DRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGG 500
DR K +I G ++ E+ES+L HP + +A V G PD E+P A V L+ G
Sbjct: 441 DRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK---- 496
Query: 501 MMTTEKDIIQYCRARIPR-YMVPKTVVFIDELPKTATGKV 539
TEK+I+ Y +++ + VVF+DE+PK TGK+
Sbjct: 497 -TMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKL 535
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 129 bits (323), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 125/520 (24%), Positives = 224/520 (43%), Gaps = 54/520 (10%)
Query: 37 DTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTI-- 94
+ T+++ + ++LA ++ +G+N H + V + N L F +P+ GA+F +
Sbjct: 48 EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSEN-----SLQFFMPVLGALFIGVAV 102
Query: 95 ---NTRLDARTISIILKHSESKLVFVDHXXXXXXXXXXXXFPPHSKTPKLVLITDDKEXX 151
N + R + + S+ +VFV P K ++I D K
Sbjct: 103 APANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQK----IIIMDSKTDY 158
Query: 152 XXXXXXXXXXXADFVDTYENMLAKGDPQFSWVRPKSDLD---PMVLNYTWGTTSAPKGVV 208
FV ++ L G ++ +V D D +++N + G+T PKGV
Sbjct: 159 QGFQSMYT-----FVTSH---LPPGFNEYDFVPESFDRDKTIALIMN-SSGSTGLPKGVA 209
Query: 209 QCYKAF---FIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVCLRKFD 265
++ F A D + + + +L +P H G T G + G V + +F+
Sbjct: 210 LPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFE 269
Query: 266 APTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQLD-RPVRILTAGSPPPAPVLLRTESL 324
++ + + P + + + S + D + + +G P + + +
Sbjct: 270 EELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK 329
Query: 325 GFI---VSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPE 381
F + GYG TE + P+ + P + + E +VD +
Sbjct: 330 RFHLPGIRQGYGLTETTS---AILITPEGDDKPGAVG---------KVVPFFEAKVVDLD 377
Query: 382 TGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCM-KDGRYYTGDVGMMHPDGYLEIK 440
TG ++ + RGE+ +RG +M GY+ +PEAT+ + KDG ++GD+ D + I
Sbjct: 378 TGKTLGVN--QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIV 435
Query: 441 DRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGG 500
DR K +I G ++ E+ES+L HP + +A V G PD E+P A V L+ G
Sbjct: 436 DRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK---- 491
Query: 501 MMTTEKDIIQYCRARIPR-YMVPKTVVFIDELPKTATGKV 539
TEK+I+ Y +++ + VVF+DE+PK TGK+
Sbjct: 492 -TMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKL 530
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 128 bits (322), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 125/520 (24%), Positives = 224/520 (43%), Gaps = 54/520 (10%)
Query: 37 DTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTI-- 94
+ T+++ + ++LA ++ +G+N H + V + N L F +P+ GA+F +
Sbjct: 48 EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSEN-----SLQFFMPVLGALFIGVAV 102
Query: 95 ---NTRLDARTISIILKHSESKLVFVDHXXXXXXXXXXXXFPPHSKTPKLVLITDDKEXX 151
N + R + + S+ +VFV P K ++I D K
Sbjct: 103 APANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQK----IIIMDSKTDY 158
Query: 152 XXXXXXXXXXXADFVDTYENMLAKGDPQFSWVRPKSDLD---PMVLNYTWGTTSAPKGVV 208
FV ++ L G ++ +V D D +++N + G+T PKGV
Sbjct: 159 QGFQSMYT-----FVTSH---LPPGFNEYDFVPESFDRDKTIALIMN-SSGSTGLPKGVA 209
Query: 209 QCYKAF---FIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVCLRKFD 265
++ F A D + + + +L +P H G T G + G V + +F+
Sbjct: 210 LPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFE 269
Query: 266 APTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQLD-RPVRILTAGSPPPAPVLLRTESL 324
++ + + P + + + S + D + + +G P + + +
Sbjct: 270 EELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK 329
Query: 325 GFI---VSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPE 381
F + GYG TE + P+ + P + + E +VD +
Sbjct: 330 RFHLPGIRQGYGLTETTS---AILITPEGDDKPGAVG---------KVVPFFEAKVVDLD 377
Query: 382 TGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCM-KDGRYYTGDVGMMHPDGYLEIK 440
TG ++ + RGE+ +RG +M GY+ +PEAT+ + KDG ++GD+ D + I
Sbjct: 378 TGKTLGVN--QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIV 435
Query: 441 DRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGG 500
DR K +I G ++ E+ES+L HP + +A V G PD E+P A V L+ G
Sbjct: 436 DRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK---- 491
Query: 501 MMTTEKDIIQYCRARIPR-YMVPKTVVFIDELPKTATGKV 539
TEK+I+ Y +++ + VVF+DE+PK TGK+
Sbjct: 492 -TMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKL 530
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 125 bits (314), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 115/370 (31%), Positives = 168/370 (45%), Gaps = 34/370 (9%)
Query: 188 DLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLID-WVVPKQSVLLWTLPMFHNNGWS 246
D DP ++ YT GTT PKG V +A +D+L D W + VL+ LP+FH +G
Sbjct: 154 DGDPALVVYTSGTTGPPKGAVIPRRAL-ATTLDALADAWQWTGEDVLVQGLPLFHVHGLV 212
Query: 247 F-TWGAAVVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPI----VLNLLSSSPEAKQLD 301
G G + L +F A G T + G P + L + PE +
Sbjct: 213 LGILGPLRRGGSVRHLGRFSTEGA-ARELNDGATMLFGVPTMYHRIAETLPADPELAKAL 271
Query: 302 RPVRILTAGSPPPAPVLLRTE---SLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARER 358
R+L +GS PV + G V YG TE +N S R
Sbjct: 272 AGARLLVSGSAA-LPVHDHERIAAATGRRVIERYGMTETL-MNTSV-------------R 316
Query: 359 ASLKARQGVRTIGL--TEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSK 416
A + R G + L E+ +V+ + DG++ GEI +RG +L YL P+AT+
Sbjct: 317 ADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAA 376
Query: 417 CM-KDGRYYTGDVGMMHPDGYLEIKDR-SKDVIISGGENISSTEIESVLYSHPMVNEAAV 474
+DG + TGD+ + PDGY+ I R + D+I SGG I + EIE+ L HP V EAAV
Sbjct: 377 AFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAV 436
Query: 475 VGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKT 534
G PDP E A++ + T + + AR+ + P+ V ++D +P+
Sbjct: 437 TGEPDPDLGERIVAWIVPADPAAPPALGT----LADHVAARLAPHKRPRVVRYLDAVPRN 492
Query: 535 ATGKVQKYVL 544
GK+ K L
Sbjct: 493 DMGKIMKRAL 502
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 109/364 (29%), Positives = 165/364 (45%), Gaps = 34/364 (9%)
Query: 190 DPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLID-WVVPKQSVLLWTLPMFHNNGWSFT 248
D + YT GTT KG + ++ +L+D W VL+ LP++H +G
Sbjct: 156 DLAAILYTSGTTGRSKGAXLSHDNLASNSL-TLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 249 WGAAVVG-ATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPE-AKQLDRPVRI 306
+ + + L KFD + L + T + G P L SP K+ R+
Sbjct: 215 SNVTLFARGSXIFLPKFDPDKILDLXAR--ATVLXGVPTFYTRLLQSPRLTKETTGHXRL 272
Query: 307 LTAGSPPPAPVLLRTE-----SLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASL 361
+GS AP+L T G V YG TE N + + +++P A
Sbjct: 273 FISGS---APLLADTHREWSAKTGHAVLERYGXTE---TNXNTSNPYDGDRVPG---AVG 323
Query: 362 KARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEAT-SKCMKD 420
A GV + DPETG + R G I ++G ++ GY + PE T S+ D
Sbjct: 324 PALPGV------SARVTDPETGKELPR--GDIGXIEVKGPNVFKGYWRXPEKTKSEFRDD 375
Query: 421 GRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDP 480
G + TGD+G + GY+ I R KD++I+GG N+ EIES + + P V E+AV+G P
Sbjct: 376 GFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVVESAVIGVPHA 435
Query: 481 FWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQ 540
+ E A V G E ++ ++ ++ PK V+F+D+LP+ GKVQ
Sbjct: 436 DFGEGVTAVV-----VRDKGATIDEAQVLHGLDGQLAKFKXPKKVIFVDDLPRNTXGKVQ 490
Query: 541 KYVL 544
K VL
Sbjct: 491 KNVL 494
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 176/366 (48%), Gaps = 31/366 (8%)
Query: 192 MVLNYTWGTTSAPKGVVQCYKAF---FIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFT 248
+++N + G+T PKGV ++ F A D + V + +L +P H G T
Sbjct: 196 LIMN-SSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTT 254
Query: 249 WGAAVVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQLD--RPVRI 306
G + G V L KFD T ++ + T++ P + +L+ S + D V I
Sbjct: 255 LGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILNKSELLNKYDLSNLVEI 314
Query: 307 LTAGSPPPAPV---LLRTESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKA 363
+ G+P V + R +L V GYG TE + P+ + P AS K
Sbjct: 315 ASGGAPLSKEVGEAVARRFNLPG-VRQGYGLTETTS---AIIITPEGDDKPG---ASGKV 367
Query: 364 RQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCM-KDGR 422
+ L + ++D +T S+ + RGE+ ++G LM GY+ +PEAT + + ++G
Sbjct: 368 ------VPLFKAKVIDLDTKKSLGPN--RRGEVCVKGPMLMKGYVNNPEATKELIDEEGW 419
Query: 423 YYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFW 482
+TGD+G + + I DR K +I G + E+ESVL HP + +A V G PDP
Sbjct: 420 LHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVA 479
Query: 483 QEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPR-YMVPKTVVFIDELPKTATGKVQK 541
E+P A V L++G + TEK+++ Y +++ + V F+DE+PK TGK+
Sbjct: 480 GELPGAVVVLESGKN-----MTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDG 534
Query: 542 YVLGDI 547
+ +I
Sbjct: 535 RAIREI 540
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 175/366 (47%), Gaps = 31/366 (8%)
Query: 192 MVLNYTWGTTSAPKGVVQCYKAF---FIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFT 248
+++N + G+T PKGV ++ F A D + V + +L +P H G T
Sbjct: 196 LIMN-SSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTT 254
Query: 249 WGAAVVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQLD--RPVRI 306
G + G V L KFD T ++ + T + P + +L+ S + D V I
Sbjct: 255 LGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEI 314
Query: 307 LTAGSPPPAPV---LLRTESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKA 363
+ G+P V + R +L V GYG TE + P+ + P AS K
Sbjct: 315 ASGGAPLSKEVGEAVARRFNLPG-VRQGYGLTETTS---AIIITPEGDDKPG---ASGKV 367
Query: 364 RQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCM-KDGR 422
+ L + ++D +T S+ + RGE+ ++G LM GY+ +PEAT + + ++G
Sbjct: 368 ------VPLFKAKVIDLDTKKSLGPN--RRGEVCVKGPMLMKGYVNNPEATKELIDEEGW 419
Query: 423 YYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFW 482
+TGD+G + + I DR K +I G + E+ESVL HP + +A V G PDP
Sbjct: 420 LHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVA 479
Query: 483 QEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPR-YMVPKTVVFIDELPKTATGKVQK 541
E+P A V L++G + TEK+++ Y +++ + V F+DE+PK TGK+
Sbjct: 480 GELPGAVVVLESGKN-----MTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDG 534
Query: 542 YVLGDI 547
+ +I
Sbjct: 535 RAIREI 540
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 175/366 (47%), Gaps = 31/366 (8%)
Query: 192 MVLNYTWGTTSAPKGVVQCYKAF---FIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFT 248
+++N + G+T PKGV ++ F A D + V + +L +P H G T
Sbjct: 196 LIMN-SSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTT 254
Query: 249 WGAAVVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQLD--RPVRI 306
G + G V L KFD T ++ + T + P + +L+ S + D V I
Sbjct: 255 LGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEI 314
Query: 307 LTAGSPPPAPV---LLRTESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKA 363
+ G+P V + R +L V GYG TE + P+ + P AS K
Sbjct: 315 ASGGAPLSKEVGEAVARRFNLPG-VRQGYGLTETTS---AIIITPEGDDKPG---ASGKV 367
Query: 364 RQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCM-KDGR 422
+ L + ++D +T S+ + RGE+ ++G LM GY+ +PEAT + + ++G
Sbjct: 368 ------VPLFKAKVIDLDTKKSLGPN--RRGEVCVKGPMLMKGYVNNPEATKELIDEEGW 419
Query: 423 YYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFW 482
+TGD+G + + I DR K +I G + E+ESVL HP + +A V G PDP
Sbjct: 420 LHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVA 479
Query: 483 QEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPR-YMVPKTVVFIDELPKTATGKVQK 541
E+P A V L++G + TEK+++ Y +++ + V F+DE+PK TGK+
Sbjct: 480 GELPGAVVVLESGKN-----MTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDG 534
Query: 542 YVLGDI 547
+ +I
Sbjct: 535 RAIREI 540
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 135/507 (26%), Positives = 215/507 (42%), Gaps = 47/507 (9%)
Query: 51 QLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHS 110
+LAS +S G+ G V V PN +A+ A IN + + IL S
Sbjct: 64 KLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILNDS 123
Query: 111 ESKLVFVDHXXXXXXXXXXXXFPPHSKTPKLVLITDDKEXXXXXXXXXXXXXADFVDTYE 170
E+ + V HS L + K V++
Sbjct: 124 EATTLVV-----------------HSX-----LYENFKPVLEKTGVERVFVVGGEVNSLS 161
Query: 171 NMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQ 230
+ G F V+ + D ++ YT GTT PKGV + A+ + +
Sbjct: 162 EVXDSGSEDFENVKVNPEEDVALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATGLSHX 221
Query: 231 SVLLWTLPMFHNNGWSFTWGAAVVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNL 290
++ P FH+ + VG V F+ + I K+ T P LN+
Sbjct: 222 DTIVGCXPXFHSAEFGLVNLXVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNV 281
Query: 291 LSSSPEA--KQLD-RPVRILTAGSPPPAPVLLRTESLGFIVSHGYGK-----TEIAGVNV 342
L ++ E+ K D +++ G+ P AP L+ E L + + +I G
Sbjct: 282 LVNTLESSNKTYDWSYLKVFATGAWPVAPALV--EKLLKLAAEKCNNPRLRHNQIWGXTE 339
Query: 343 SCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGS 402
+C P P R QGV + E+ ++ E G + G++ GEIV+RG +
Sbjct: 340 AC---PXVTTNPPL-RLDKSTTQGVPXSDI-ELKVISLEDGRELGV-GES-GEIVIRGPN 392
Query: 403 LMLGYLKDPEATSKCM---KDGR--YYTGDVGMMHPDGYLEIKDRSKDVIISGGENISST 457
+ GY K + +C + GR + TGDVG + +G+L +DR K+VI G I+
Sbjct: 393 IFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPF 452
Query: 458 EIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIP 517
E+E++L H V + AV+G+PD E+P AF+ LK E+DII++ R RI
Sbjct: 453 ELEALLXKHEAVXDVAVIGKPDEEAGEVPKAFIVLKPEYRG---KVDEEDIIEWVRERIS 509
Query: 518 RYMVPKTVVFIDELPKTATGKVQKYVL 544
Y + V F++ELP+TA+GK+ + +L
Sbjct: 510 GYKRVREVEFVEELPRTASGKLLRRLL 536
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 140/545 (25%), Positives = 233/545 (42%), Gaps = 72/545 (13%)
Query: 19 FIERAAT-ACDDCP-SIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPA 76
+ RAAT A D C ++ T ++ R +A+ L + G+ P V+V+APN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 77 MYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHXXXXXXXXXXXXFPPHS 136
+ A+ GA+ +N RL + ++ ++K E + F S
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVI----AVGRQVADAIFQSGS 122
Query: 137 KTPKLVLITDDKEXXXXXXXXXXXXXADFVDTYENMLAKGDPQFSWVRPKSD-----LDP 191
+++ + D ++ G+P +S+ P D P
Sbjct: 123 GA-RIIFLGD-------------------------LVRDGEP-YSYGPPIEDPQREPAQP 155
Query: 192 MVLNYTWGTTSAPKGVV--QCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTW 249
+ YT GTT PK + Q ++ + + + + +V+L +P++H G+
Sbjct: 156 AFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVL 215
Query: 250 GAAV-VGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSP----EAKQLDRPV 304
AA+ + T V + +F L+++ VT + P L+ L+++ + +LD
Sbjct: 216 VAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLR 275
Query: 305 RILTAGSPPPAPVLLRT-ESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARE-RASLK 362
+ AG+ P VL + L +GYG TE N L R+ + +
Sbjct: 276 HVTFAGATMPDAVLETVHQHLPGEKVNGYGTTE------------AMNSLYMRQPKTGTE 323
Query: 363 ARQGVRTIGLTEVDIVDPETGL-SVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCMKDG 421
G +EV IV G+ + +G+ IV S +GYL P+AT++ ++DG
Sbjct: 324 MAPGF----FSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDG 379
Query: 422 RYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPF 481
Y T DV + P+G + I R D+IISGGENI +EIE VL + P V E V+G D
Sbjct: 380 WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQR 439
Query: 482 WQEIPCAFVSLKTG-TDSGGMMTTEKDIIQYCR-ARIPRYMVPKTVVFIDELPKTATGKV 539
W + A V + G T S + T +CR + + + PK +D+LPK A KV
Sbjct: 440 WGQSVTACVVPRLGETLSADALDT------FCRSSELADFKRPKRYFILDQLPKNALNKV 493
Query: 540 QKYVL 544
+ L
Sbjct: 494 LRRQL 498
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 139/545 (25%), Positives = 232/545 (42%), Gaps = 72/545 (13%)
Query: 19 FIERAAT-ACDDCP-SIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPA 76
+ RAAT A D C ++ T ++ R +A+ L + G+ P V+V+APN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 77 MYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHXXXXXXXXXXXXFPPHS 136
+ A+ GA+ +N RL + ++ ++K E + F S
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVI----AVGRQVADAIFQSGS 122
Query: 137 KTPKLVLITDDKEXXXXXXXXXXXXXADFVDTYENMLAKGDPQFSWVRPKSD-----LDP 191
+++ + D ++ G+P +S+ P D P
Sbjct: 123 GA-RIIFLGD-------------------------LVRDGEP-YSYGPPIEDPQREPAQP 155
Query: 192 MVLNYTWGTTSAPKGVV--QCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTW 249
+ YT GTT PK + Q ++ + + + + +V+L +P++H G+
Sbjct: 156 AFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVL 215
Query: 250 GAAV-VGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSP----EAKQLDRPV 304
AA+ + T V + +F L+++ VT + P L+ L+++ + +LD
Sbjct: 216 VAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLR 275
Query: 305 RILTAGSPPPAPVLLRT-ESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARE-RASLK 362
+ AG+ P VL + L + YG TE N L R+ + +
Sbjct: 276 HVTFAGATMPDAVLETVHQHLPGEKVNAYGTTE------------AMNSLYMRQPKTGTE 323
Query: 363 ARQGVRTIGLTEVDIVDPETGL-SVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCMKDG 421
G +EV IV G+ + +G+ IV S +GYL P+AT++ ++DG
Sbjct: 324 MAPGF----FSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDG 379
Query: 422 RYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPF 481
Y T DV + P+G + I R D+IISGGENI +EIE VL + P V E V+G D
Sbjct: 380 WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQR 439
Query: 482 WQEIPCAFVSLKTG-TDSGGMMTTEKDIIQYCR-ARIPRYMVPKTVVFIDELPKTATGKV 539
W + A V + G T S + T +CR + + + PK +D+LPK A KV
Sbjct: 440 WGQSVTACVVPRLGETLSADALDT------FCRSSELADFKRPKRYFILDQLPKNALNKV 493
Query: 540 QKYVL 544
+ L
Sbjct: 494 LRRQL 498
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 141/550 (25%), Positives = 232/550 (42%), Gaps = 82/550 (14%)
Query: 19 FIERAAT-ACDDCP-SIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPA 76
+ RAAT A D C ++ T ++ R +A+ L + G+ P V+V+APN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 77 MYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHXXXXXXXXXXXXFPPHS 136
+ A+ GA+ +N RL + ++ ++K E + F S
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVI----AVGRQVADAIFQSGS 122
Query: 137 KTPKLVLITDDKEXXXXXXXXXXXXXADFVDTYENMLAKGDPQFSWVRPKSD-----LDP 191
+++ + D ++ G+P +S+ P D P
Sbjct: 123 GA-RIIFLGD-------------------------LVRDGEP-YSYGPPIEDPQREPAQP 155
Query: 192 MVLNYTWGTTSAPKGVV--QCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTW 249
+ YT GTT PK + Q ++ + + + + +V+L +P++H G+
Sbjct: 156 AFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVL 215
Query: 250 GAAV-VGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSP----EAKQLDRPV 304
AA+ + T V + +F L+++ VT + P L+ L+++ + +LD
Sbjct: 216 VAALALDGTYVVIEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLR 275
Query: 305 RILTAGSPPPAPVL------LRTESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARE- 357
+ AG+ P VL L E + YG TE N L R+
Sbjct: 276 HVTFAGATMPDAVLETVHQHLPGEKVNI-----YGTTE------------AMNSLYMRQP 318
Query: 358 RASLKARQGVRTIGLTEVDIVDPETGL-SVKRDGQTRGEIVMRGGSLMLGYLKDPEATSK 416
+ + G +EV IV G+ + +G+ IV S +GYL PEAT++
Sbjct: 319 KTGTEMAPGF----FSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPEATAE 374
Query: 417 CMKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVG 476
++DG Y T DV + P+G + I R D+IISGGENI +EIE VL + P V E V+G
Sbjct: 375 KLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIG 434
Query: 477 RPDPFWQEIPCAFVSLKTG-TDSGGMMTTEKDIIQYCR-ARIPRYMVPKTVVFIDELPKT 534
D W + A V + G T S + T +CR + + + PK +D+LPK
Sbjct: 435 LADQRWGQSVTACVVPRLGETLSADALDT------FCRSSELADFKRPKRYFILDQLPKN 488
Query: 535 ATGKVQKYVL 544
A KV + L
Sbjct: 489 ALNKVLRRQL 498
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 172/410 (41%), Gaps = 43/410 (10%)
Query: 36 NDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTIN 95
D T++Q + A L++ GI G V+++ PN L + GA+ IN
Sbjct: 26 TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPIN 85
Query: 96 TRLDARTISIILKHSESKLVFVDHXXXXXXXXXXXXFPPHSKTPKLVLITDDKEXXXXXX 155
TRL A +S IL S SK+V P +I +
Sbjct: 86 TRLAAPEVSFILSDSGSKVVIY-------------------GAPSAPVIDAIRAQADPPG 126
Query: 156 XXXXXXXADFVDTYENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFF 215
AD + A +P V D D + + YT GTT PKGVV +++
Sbjct: 127 TVTDWIGADSLAERLRSAAADEPA---VECGGD-DNLFIMYTSGTTGHPKGVVHTHESVH 182
Query: 216 IIAVD--SLIDWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVCLRKFDAPTVFALI 273
A S ID V + LL LPMFH + +A+ G T + + +FDA V++LI
Sbjct: 183 SAASSWASTID--VRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLI 240
Query: 274 RKHGVTHMCGAPIVLNLLSSSPEAKQLDRP--VRILTAGSPPPAPVLLRTESLGFIVSHG 331
+ V P +LN + PE +LD P +T G+P P ++ + V G
Sbjct: 241 VEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNIEVVQG 300
Query: 332 YGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQ 391
Y TE SC L E A KA R T+V V + G+ ++ G+
Sbjct: 301 YALTE------SCGG----GTLLLSEDALRKAGSAGRATMFTDV-AVRGDDGV-IREHGE 348
Query: 392 TRGEIVMRGGSLMLGYLKDPEATSKCMKDGRYYTGDVGMMHPDGYLEIKD 441
GE+V++ L+ Y PEAT +G + TGD+G + +GYL IKD
Sbjct: 349 --GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKD 396
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 140/550 (25%), Positives = 232/550 (42%), Gaps = 82/550 (14%)
Query: 19 FIERAAT-ACDDCP-SIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPA 76
+ RAAT A D C ++ T ++ R +A+ L + G+ P V+V+APN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 77 MYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHXXXXXXXXXXXXFPPHS 136
+ A+ GA+ +N RL + ++ ++K E + F S
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVI----AVGRQVADAIFQSGS 122
Query: 137 KTPKLVLITDDKEXXXXXXXXXXXXXADFVDTYENMLAKGDPQFSWVRPKSD-----LDP 191
+++ + D ++ G+P +S+ P D P
Sbjct: 123 GA-RIIFLGD-------------------------LVRDGEP-YSYGPPIEDPQREPAQP 155
Query: 192 MVLNYTWGTTSAPKGVV--QCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTW 249
+ YT GTT PK + Q ++ + + + + +V+L +P++H G+
Sbjct: 156 AFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVL 215
Query: 250 GAAV-VGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSP----EAKQLDRPV 304
AA+ + T V + +F L+++ VT + P L+ L+++ + +LD
Sbjct: 216 VAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLR 275
Query: 305 RILTAGSPPPAPVL------LRTESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARE- 357
+ AG+ P VL L E + YG TE N L R+
Sbjct: 276 HVTFAGATMPDAVLETVHQHLPGEKVNI-----YGTTE------------AMNSLYMRQP 318
Query: 358 RASLKARQGVRTIGLTEVDIVDPETGL-SVKRDGQTRGEIVMRGGSLMLGYLKDPEATSK 416
+ + G +EV IV G+ + +G+ IV S +GYL P+AT++
Sbjct: 319 KTGTEMAPGF----FSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAE 374
Query: 417 CMKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVG 476
++DG Y T DV + P+G + I R D+IISGGENI +EIE VL + P V E V+G
Sbjct: 375 KLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIG 434
Query: 477 RPDPFWQEIPCAFVSLKTG-TDSGGMMTTEKDIIQYCR-ARIPRYMVPKTVVFIDELPKT 534
D W + A V + G T S + T +CR + + + PK +D+LPK
Sbjct: 435 LADQRWGQSVTACVVPRLGETLSADALDT------FCRSSELADFKRPKRYFILDQLPKN 488
Query: 535 ATGKVQKYVL 544
A KV + L
Sbjct: 489 ALNKVLRRQL 498
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 103/358 (28%), Positives = 162/358 (45%), Gaps = 31/358 (8%)
Query: 196 YTWGTTSAPKGVVQCYKAFFIIAVDSLID-WVVPKQSVLLWTLPMFHNNGWSFTWGAAVV 254
YT GTT G + + ++ +L+D W VL+ LP++H +G +
Sbjct: 162 YTSGTTGRSXGAMLSHDNLASNSL-TLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLF 220
Query: 255 G-ATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPE-AKQLDRPVRILTAGSP 312
+ + L FD + L+ + T + G P L SP + +R+ +GS
Sbjct: 221 ARGSMIFLPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGS- 277
Query: 313 PPAPVLLRTE-----SLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGV 367
AP+L T G V YG TE N++ + +++P A A GV
Sbjct: 278 --APLLADTHREWSAXTGHAVLERYGMTE---TNMNTSNPYDGDRVPG---AVGPALPGV 329
Query: 368 RTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEAT-SKCMKDGRYYTG 426
+ DPETG + R G I + G ++ GY + PE T S+ DG + TG
Sbjct: 330 ------SARVTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITG 381
Query: 427 DVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIP 486
D+G + GY+ I R D++I+GG N+ EIES + + P V E+AV+G P + E
Sbjct: 382 DLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGV 441
Query: 487 CAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVL 544
AFV L ++ E + + R+ + +P V+F+D+LP+ G VQ VL
Sbjct: 442 TAFVVLXREFAPSEILAEE--LXAFVXDRLAXFXMPXXVIFVDDLPRNTMGAVQXNVL 497
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 140/550 (25%), Positives = 232/550 (42%), Gaps = 82/550 (14%)
Query: 19 FIERAAT-ACDDCP-SIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPA 76
+ RAAT A D C ++ T ++ R +A+ L + G+ P V+V+APN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 77 MYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHXXXXXXXXXXXXFPPHS 136
+ A+ GA+ +N RL + ++ ++K E + F S
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVI----AVGRQVADAIFQSGS 122
Query: 137 KTPKLVLITDDKEXXXXXXXXXXXXXADFVDTYENMLAKGDPQFSWVRPKSD-----LDP 191
+++ + D ++ G+P +S+ P D P
Sbjct: 123 GA-RIIFLGD-------------------------LVRDGEP-YSYGPPIEDPQREPAQP 155
Query: 192 MVLNYTWGTTSAPKGVV--QCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTW 249
+ YT GTT PK + Q ++ + + + + +V+L +P++H G+
Sbjct: 156 AFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVL 215
Query: 250 GAAV-VGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSP----EAKQLDRPV 304
AA+ + T V + +F L+++ VT + P L+ L+++ + +LD
Sbjct: 216 VAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLR 275
Query: 305 RILTAGSPPPAPVL------LRTESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARE- 357
+ AG+ P VL L E + YG TE N L R+
Sbjct: 276 HVTFAGATMPDAVLETVHQHLPGEKVNI-----YGTTE------------AMNSLYMRQP 318
Query: 358 RASLKARQGVRTIGLTEVDIVDPETGL-SVKRDGQTRGEIVMRGGSLMLGYLKDPEATSK 416
+ + G +EV IV G+ + +G+ IV S +GYL P+AT++
Sbjct: 319 KTGTEMAPGF----FSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAE 374
Query: 417 CMKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVG 476
++DG Y T DV + P+G + I R D+IISGGENI +EIE VL + P V E V+G
Sbjct: 375 KLQDGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTAPGVTEVVVIG 434
Query: 477 RPDPFWQEIPCAFVSLKTG-TDSGGMMTTEKDIIQYCR-ARIPRYMVPKTVVFIDELPKT 534
D W + A V + G T S + T +CR + + + PK +D+LPK
Sbjct: 435 LADQRWGQSVTACVVPRLGETLSADALDT------FCRSSELADFKRPKRYFILDQLPKN 488
Query: 535 ATGKVQKYVL 544
A KV + L
Sbjct: 489 ALNKVLRRQL 498
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 99/358 (27%), Positives = 159/358 (44%), Gaps = 34/358 (9%)
Query: 196 YTWGTTSAPKGVVQCYKAFFIIAVDSLID-WVVPKQSVLLWTLPMFHNNGWSFTWGAAVV 254
YT GTT G + + ++ +L+D W VL+ LP++H +G +
Sbjct: 162 YTSGTTGRSXGAMLSHDNLASNSL-TLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLF 220
Query: 255 G-ATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPE-AKQLDRPVRILTAGSP 312
+ + L FD + L+ + T + G P L SP + +R+ +GS
Sbjct: 221 ARGSMIFLPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGS- 277
Query: 313 PPAPVLLRTE-----SLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGV 367
AP+L T G V YG TE N++ + +++P +L
Sbjct: 278 --APLLADTHREWSAXTGHAVLERYGMTE---TNMNTSNPYDGDRVPGAVGPALPG---- 328
Query: 368 RTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEAT-SKCMKDGRYYTG 426
+ DPETG + R G I + G ++ GY + PE T S+ DG + TG
Sbjct: 329 -----VSARVTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITG 381
Query: 427 DVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIP 486
D+G + GY+ I R D++I+GG N+ EIES + + P V E+AV+G P + E
Sbjct: 382 DLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGV 441
Query: 487 CAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVL 544
AFV L +E ++ ++ + +P V+F+D+LP+ G VQ VL
Sbjct: 442 TAFVVLXR-----EFAPSEAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNVL 494
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 140/549 (25%), Positives = 229/549 (41%), Gaps = 82/549 (14%)
Query: 20 IERAAT-ACDDCP-SIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAM 77
+ RAAT A D C ++ T ++ R +A+ L + G+ P V+V+APN +
Sbjct: 8 LRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV 67
Query: 78 YELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHXXXXXXXXXXXXFPPHSK 137
A+ GA+ +N RL + ++ ++K E + F S
Sbjct: 68 VIAILALHRLGAVPALLNPRLKSAELAELIKRGEXTAAVI----AVGRQVADAIFQSGSG 123
Query: 138 TPKLVLITDDKEXXXXXXXXXXXXXADFVDTYENMLAKGDPQFSWVRPKSD-----LDPM 192
+++ + D ++ G+P +S+ P D P
Sbjct: 124 A-RIIFLGD-------------------------LVRDGEP-YSYGPPIEDPQREPAQPA 156
Query: 193 VLNYTWGTTSAPKGVV--QCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTWG 250
+ YT GTT PK + Q ++ + + + +V+L P++H G+
Sbjct: 157 FIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQVGLRHGRHNVVLGLXPLYHVVGFFAVLV 216
Query: 251 AAV-VGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSP----EAKQLDRPVR 305
AA+ + T V + +F L+++ VT + P L+ L+++ + +LD
Sbjct: 217 AALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRH 276
Query: 306 ILTAGSPPPAPVL------LRTESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARE-R 358
+ AG+ P VL L E + YG TE N L R+ +
Sbjct: 277 VTFAGATXPDAVLETVHQHLPGEKVNI-----YGTTE------------AXNSLYXRQPK 319
Query: 359 ASLKARQGVRTIGLTEVDIVDPETGL-SVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKC 417
+ G +EV IV G+ + +G+ IV S +GYL P+AT++
Sbjct: 320 TGTEXAPGF----FSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEK 375
Query: 418 MKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGR 477
++DG Y T DV + P+G + I R D IISGGENI +EIE VL + P V E V+G
Sbjct: 376 LQDGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAPGVTEVVVIGL 435
Query: 478 PDPFWQEIPCAFVSLKTG-TDSGGMMTTEKDIIQYCR-ARIPRYMVPKTVVFIDELPKTA 535
D W + A V + G T S + T +CR + + + PK +D+LPK A
Sbjct: 436 ADQRWGQSVTACVVPRLGETLSADALDT------FCRSSELADFKRPKRYFILDQLPKNA 489
Query: 536 TGKVQKYVL 544
KV + L
Sbjct: 490 LNKVLRRQL 498
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 98/358 (27%), Positives = 157/358 (43%), Gaps = 34/358 (9%)
Query: 196 YTWGTTSAPKGVVQCYKAFFIIAVDSLID-WVVPKQSVLLWTLPMFHNNGWSFTWGAAVV 254
YT GTT G + + ++ +L+D W VL+ LP++H +G +
Sbjct: 162 YTSGTTGRSXGAMLSHDNLASNSL-TLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLF 220
Query: 255 G-ATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPE-AKQLDRPVRILTAGSP 312
+ + L FD + L+ + T + G P L SP + +R+ +GS
Sbjct: 221 ARGSMIFLPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGS- 277
Query: 313 PPAPVLLRTE-----SLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGV 367
AP+L T G V YG TE N++ + +++P +L
Sbjct: 278 --APLLADTHREWSAXTGHAVLERYGMTE---TNMNTSNPYDGDRVPGAVGPALPG---- 328
Query: 368 RTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEAT-SKCMKDGRYYTG 426
+ DPETG + R G I + G ++ GY + PE T S+ DG + TG
Sbjct: 329 -----VSARVTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITG 381
Query: 427 DVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIP 486
D+G + GY+ I R D++I+GG N+ EIES + + P V E+AV+G P + E
Sbjct: 382 DLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGV 441
Query: 487 CAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVL 544
A V G E ++ ++ + +P V+F+D+LP+ G VQ VL
Sbjct: 442 TAVVVRDXGA-----TIDEAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNVL 494
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 108 bits (269), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 122/518 (23%), Positives = 210/518 (40%), Gaps = 54/518 (10%)
Query: 51 QLASSLS-SFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKH 109
Q A+ LS + G+ G V+V+ P +P + + +G IF ++ + I L+
Sbjct: 85 QAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQM 144
Query: 110 SESKLVFVDHXXXXXXXXXXXXFPPHSKTPKLVLITDDKEXXXXXXXXXXXXXADFVDTY 169
S++K + P + ++ L+ +K D +
Sbjct: 145 SKAKAIVAGDEVIQEVDTVASECP----SLRIKLLVSEKS-------------CDGWLNF 187
Query: 170 ENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIA-VDSLIDWVVP 228
+ +L + V S + + +T GT+ PK Y + + A +D+ W
Sbjct: 188 KKLLNEASTTHHCVETGSQ-EASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA--GWTGL 244
Query: 229 KQSVLLWTLPMFHNNGWSFTWGAAVVG--ATNVC-----LRKFDAPTVFALIRKHGVTHM 281
+ S ++WT+ + GW +++ A C L KFD + + + + M
Sbjct: 245 QASDIMWTI---SDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSM 301
Query: 282 CGAPIVLN-LLSSSPEAKQLDRPVRILTAG-SPPPAPVLLRTESLGFIVSHGYGKTEIAG 339
GAPIV LL + + +T G S P + G + YG+TE
Sbjct: 302 MGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETG- 360
Query: 340 VNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMR 399
L ++K + G + D+ + +V G T G+I +R
Sbjct: 361 -------------LTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPG-TEGDIGIR 406
Query: 400 GG-----SLMLGYLKDPEATSKCMKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENI 454
+ GY+ +P+ T+ ++ + GD G+ DGY + R+ D+I S G I
Sbjct: 407 VKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRI 466
Query: 455 SSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRA 514
+E+E+ L HP V E AV+ PDP E+ AFV L + S K++ Q+ ++
Sbjct: 467 GPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKS 526
Query: 515 RIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIANSMS 552
Y P+ + F+ LPKT TGK+Q+ L D MS
Sbjct: 527 VTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKMS 564
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 122/518 (23%), Positives = 210/518 (40%), Gaps = 54/518 (10%)
Query: 51 QLASSLS-SFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKH 109
Q A+ LS + G+ G V+V+ P +P + + +G IF ++ + I L+
Sbjct: 85 QAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQM 144
Query: 110 SESKLVFVDHXXXXXXXXXXXXFPPHSKTPKLVLITDDKEXXXXXXXXXXXXXADFVDTY 169
S++K + P + ++ L+ +K D +
Sbjct: 145 SKAKAIVAGDEVIQEVDTVASECP----SLRIKLLVSEKS-------------CDGWLNF 187
Query: 170 ENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIA-VDSLIDWVVP 228
+ +L + V S + + +T GT+ PK Y + + A +D+ W
Sbjct: 188 KKLLNEASTTHHCVETGSQ-EASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA--GWTGL 244
Query: 229 KQSVLLWTLPMFHNNGWSFTWGAAVVG--ATNVC-----LRKFDAPTVFALIRKHGVTHM 281
+ S ++WT+ + GW +++ A C L KFD + + + + M
Sbjct: 245 QASDIMWTI---SDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSM 301
Query: 282 CGAPIVLN-LLSSSPEAKQLDRPVRILTAG-SPPPAPVLLRTESLGFIVSHGYGKTEIAG 339
GAPIV LL + + +T G S P + G + YG+TE
Sbjct: 302 MGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETG- 360
Query: 340 VNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMR 399
L ++K + G + D+ + +V G T G+I +R
Sbjct: 361 -------------LTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPG-TEGDIGIR 406
Query: 400 GG-----SLMLGYLKDPEATSKCMKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENI 454
+ GY+ +P+ T+ ++ + GD G+ DGY + R+ D+I S G I
Sbjct: 407 VKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRI 466
Query: 455 SSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRA 514
+E+E+ L HP V E AV+ PDP E+ AFV L + S K++ Q+ ++
Sbjct: 467 GPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKS 526
Query: 515 RIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIANSMS 552
Y P+ + F+ LPKT TGK+Q+ L D MS
Sbjct: 527 VTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKMS 564
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 139/322 (43%), Gaps = 40/322 (12%)
Query: 245 WSFTWGAAVVGATNVCLR--KFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQLDR 302
W +G + G +F+A + K+GVT C P + L +
Sbjct: 282 WGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFS 341
Query: 303 PVRI-LTAGSPPPAPVLLR-TESLGFIVSHGYGKTEIAGVNVSCAW-KPKWNKLPARERA 359
++ + AG P V R E G + G+G+TE + W +PK +
Sbjct: 342 TLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSI------ 395
Query: 360 SLKARQGVRTIGLTEVDIVDPETGLSVKRDGQ-----TRGEIV---MRGG--SLMLGYLK 409
G T G +++++D RDG+ GEIV M G L + Y K
Sbjct: 396 ------GKPTPGY-KIELMD--------RDGRLCEVGEEGEIVINTMEGKPVGLFVHYGK 440
Query: 410 DPEATSKCMKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMV 469
DPE T + DG Y+TGD+ M DGYL R+ D+I + G + E+ES L HP V
Sbjct: 441 DPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAV 500
Query: 470 NEAAVVGRPDPF-WQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFI 528
E A+ G PDP Q I V K T S + +D ++ A Y P+ + F+
Sbjct: 501 LECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTA---PYKYPRIIEFV 557
Query: 529 DELPKTATGKVQKYVLGDIANS 550
ELPKT +GK+++ + D S
Sbjct: 558 PELPKTISGKIRRVEIRDKDQS 579
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 131/540 (24%), Positives = 203/540 (37%), Gaps = 69/540 (12%)
Query: 26 ACDDCPSIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVP 85
A D ++I + ++ + + LA SL GI PG V N+ +Y FA+
Sbjct: 37 AASDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALL 96
Query: 86 MSG-----AIFNTINTRLDARTISIILKHSESKLVFVD--HXXXXXXXXXXXXFPPHSKT 138
G A+F+ + L+A I E L+ D H HS
Sbjct: 97 KLGVAPVLALFSHQRSELNAYASQI-----EPALLIADRQHALFSGDDFLNTFVTEHSSI 151
Query: 139 PKLVLITDDKEXXXXXXXXXXXXXADFVDTYENMLAKGDPQFSWVRPKSDLDPMVLNYTW 198
+ L+ D E DF T P + +
Sbjct: 152 RVVQLLNDSGEHNLQDAINHPAE--DFTAT----------------PSPADEVAYFQLSG 193
Query: 199 GTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSF--TWGAAVVGA 256
GTT PK + + + ++ S+ +Q+ L +P HN S + G + G
Sbjct: 194 GTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGG 253
Query: 257 TNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNL----LSSSPEAKQLDRPVRILTAGSP 312
T V A F LI KH V P ++L L QL + G+
Sbjct: 254 TVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGAR 313
Query: 313 PPAPVLLRT-ESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIG 371
A + R +G + +G E VN + R A + + T G
Sbjct: 314 LSATLAARIPAEIGCQLQQVFGMAE-GLVNYT--------------RLDDSAEKIIHTQG 358
Query: 372 L-----TEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCMK-DGRYYT 425
EV + D E + G+ G ++ RG GY K P+ + +G Y +
Sbjct: 359 YPMCPDDEVWVADAEGNPLPQ--GEV-GRLMTRGPYTFRGYYKSPQHNASAFDANGFYCS 415
Query: 426 GDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEI 485
GD+ + P+GY+ ++ R KD I GGE I++ EIE++L HP V AA+V D E
Sbjct: 416 GDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEK 475
Query: 486 PCAFVSLKTGTDSGGMMTTEKDIIQYCRAR-IPRYMVPKTVVFIDELPKTATGKVQKYVL 544
CA++ +K + + ++ R + I + +P V +D LP TA GKV K L
Sbjct: 476 SCAYLVVKEPLRA-------VQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQL 528
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 82/157 (52%), Gaps = 9/157 (5%)
Query: 390 GQTRGEIVMRGGSLMLGYLKDPEATSKCM-KDGRYYTGDVGMMHPDGYLEIKDRSKDVII 448
G+T G ++ RG + GY K E + +DG Y TGD+ + DGY+ ++ R+KD I
Sbjct: 376 GET-GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQIN 434
Query: 449 SGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDI 508
GGE +++ E+E+ L +HP V++AA V PD F E C F+ + +
Sbjct: 435 RGGEKVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSCVFIIPRDEAPKAAELKA---- 490
Query: 509 IQYCRAR-IPRYMVPKTVVFIDELPKTATGKVQKYVL 544
+ R R + Y +P V F++ P+T GKV K L
Sbjct: 491 --FLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKAL 525
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 83/157 (52%), Gaps = 9/157 (5%)
Query: 390 GQTRGEIVMRGGSLMLGYLKDPEATSKCM-KDGRYYTGDVGMMHPDGYLEIKDRSKDVII 448
G+T G ++ RG + GY K E + +DG Y TGD+ + DGY+ ++ R+KD I
Sbjct: 376 GET-GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQIN 434
Query: 449 SGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDI 508
GGE +++ E+E+ L +HP V++AA+V PD F E C F+ + +
Sbjct: 435 RGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKA---- 490
Query: 509 IQYCRAR-IPRYMVPKTVVFIDELPKTATGKVQKYVL 544
+ R R + Y +P V F++ P+T GKV K L
Sbjct: 491 --FLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKAL 525
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 125/531 (23%), Positives = 206/531 (38%), Gaps = 42/531 (7%)
Query: 32 SIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAI- 90
+II + ++ + R LA+ L+ G+ G V PN+ Y + FA+ +G +
Sbjct: 48 AIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVV 107
Query: 91 FNTINTRLDARTISIILKHSESKLVFVDHXXXXXXXXXXXXFPPHSKTPKLVLITDDKEX 150
N + + + I + L+ + +P+++L+ + +
Sbjct: 108 LNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT 167
Query: 151 XXXXXXXXXXXXADFVDTYENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQC 210
FVD FS P ++ + G+T PK + +
Sbjct: 168 DFGLLDWIETPAETFVD------------FSST-PADEV--AFFQLSGGSTGTPKLIPRT 212
Query: 211 YKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVCLRKFDAP--- 267
+ + S + + LL LP HN S + GA V C+ P
Sbjct: 213 HNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLS-SPGALGVLHAGGCVVMAPNPEPL 271
Query: 268 TVFALIRKHGVTHMCGAP-IVLNLLSSSPEAKQLDRPVRILTAGSPPPAPVLLRT--ESL 324
F++I++H V P V+ L + + K + +++L G L R E L
Sbjct: 272 NCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL 331
Query: 325 GFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGL 384
+ +G E VN + +L + + QG E+ IVD +
Sbjct: 332 NCKLQQVFGMAE-GLVN--------YTRLDDSDE-QIFTTQGRPISSDDEIKIVDEQ--Y 379
Query: 385 SVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCM-KDGRYYTGDVGMMHPDGYLEIKDRS 443
+G+ G + RG GY + PE S+ +D YY+GD+ PDG L + R
Sbjct: 380 REVPEGEI-GMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRI 438
Query: 444 KDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMT 503
KD I GGE I+S EIE ++ HP V AA+V D + E CAF+ + ++
Sbjct: 439 KDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLR 498
Query: 504 TEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIANSMSMS 554
I +Y +P + I+ LP TA GKV K L I N+ + S
Sbjct: 499 R-----HLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTSTTS 544
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 130/565 (23%), Positives = 219/565 (38%), Gaps = 63/565 (11%)
Query: 20 IERAATACDDCPSIIY--NDTTYT----WSQTYRRCLQLASSLSSFGINPGHVVSVIAPN 73
++R D +II+ +DT+ + + + +R + A++L GI G VV++ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 74 IPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFV--DHXXXXXXXXXXXX 131
+P A GA+ + I ++ + S S+LV +
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 132 FPPHSKTPKLVLITDDKEXXXXXXXXXXXXXADFVDTYENMLAKGDPQFSWVRPKSDLDP 191
K P + + D + +++ K P+ + DP
Sbjct: 202 VDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDL--WWRDLIEKASPEHQ-PEAMNAEDP 258
Query: 192 MVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLW-TLPMFHNNGWSFT-W 249
+ + YT G+T PKGV+ + + A + + W T + G S+ +
Sbjct: 259 LFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLY 318
Query: 250 GAAVVGATNVCLRKF-DAPT---VFALIRKHGVTHMCGAPIVLNLLSSSPEA--KQLDRP 303
G GAT + + PT + ++ KH V + AP + L + + + DR
Sbjct: 319 GPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRS 378
Query: 304 -VRIL-TAGSP------------------PPAPVLLRTESLGFIVSHGYGKTEIAGVNVS 343
+RIL +AG P P +TE+ GF+++ G E+
Sbjct: 379 SLRILGSAGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIEL---KAG 435
Query: 344 CAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSL 403
A +P + PA L +G G TE ++V ++ GQ R
Sbjct: 436 SATRPFFGVQPA-----LVDNEGHPQEGATEGNLV-----ITDSWPGQAR---------T 476
Query: 404 MLGYLKDPEATSKCMKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVL 463
+ G + E T Y++GD DGY I R DV+ G + + EIES L
Sbjct: 477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 464 YSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPK 523
+HP + EAAVVG P + A+V+L G + + E + + R I P
Sbjct: 537 VAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAE--VRNWVRKEIGPLATPD 594
Query: 524 TVVFIDELPKTATGKVQKYVLGDIA 548
+ + D LPKT +GK+ + +L IA
Sbjct: 595 VLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 129/565 (22%), Positives = 218/565 (38%), Gaps = 63/565 (11%)
Query: 20 IERAATACDDCPSIIY--NDTTYT----WSQTYRRCLQLASSLSSFGINPGHVVSVIAPN 73
++R D +II+ +DT+ + + + +R + A++L GI G VV++ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 74 IPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFV--DHXXXXXXXXXXXX 131
+P A GA+ + I ++ + S S+LV +
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 132 FPPHSKTPKLVLITDDKEXXXXXXXXXXXXXADFVDTYENMLAKGDPQFSWVRPKSDLDP 191
K P + + D + +++ K P+ + DP
Sbjct: 202 VDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDL--WWRDLIEKASPEHQ-PEAMNAEDP 258
Query: 192 MVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLW-TLPMFHNNGWSFT-W 249
+ + YT G+T PKGV+ + + A + + W T + G S+ +
Sbjct: 259 LFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLY 318
Query: 250 GAAVVGATNVCLRKF-DAPT---VFALIRKHGVTHMCGAPIVLNLLSSSPEA--KQLDRP 303
G GAT + + PT + ++ KH V + AP + L + + + DR
Sbjct: 319 GPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRS 378
Query: 304 -VRIL-TAGSP------------------PPAPVLLRTESLGFIVSHGYGKTEIAGVNVS 343
+RIL + G P P +TE+ GF+++ G E+
Sbjct: 379 SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIEL---KAG 435
Query: 344 CAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSL 403
A +P + PA L +G G TE ++V ++ GQ R
Sbjct: 436 SATRPFFGVQPA-----LVDNEGHPQEGATEGNLV-----ITDSWPGQAR---------T 476
Query: 404 MLGYLKDPEATSKCMKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVL 463
+ G + E T Y++GD DGY I R DV+ G + + EIES L
Sbjct: 477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 464 YSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPK 523
+HP + EAAVVG P + A+V+L G + + E + + R I P
Sbjct: 537 VAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAE--VRNWVRKEIGPLATPD 594
Query: 524 TVVFIDELPKTATGKVQKYVLGDIA 548
+ + D LPKT +GK+ + +L IA
Sbjct: 595 VLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 129/565 (22%), Positives = 218/565 (38%), Gaps = 63/565 (11%)
Query: 20 IERAATACDDCPSIIY--NDTTYT----WSQTYRRCLQLASSLSSFGINPGHVVSVIAPN 73
++R D +II+ +DT+ + + + +R + A++L GI G VV++ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 74 IPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFV--DHXXXXXXXXXXXX 131
+P A GA+ + I ++ + S S+LV +
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGASIPLKKN 201
Query: 132 FPPHSKTPKLVLITDDKEXXXXXXXXXXXXXADFVDTYENMLAKGDPQFSWVRPKSDLDP 191
K P + + D + +++ K P+ + DP
Sbjct: 202 VDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDL--WWRDLIEKASPEHQ-PEAMNAEDP 258
Query: 192 MVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLW-TLPMFHNNGWSFT-W 249
+ + YT G+T PKGV+ + + A + + W T + G S+ +
Sbjct: 259 LFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLY 318
Query: 250 GAAVVGATNVCLRKF-DAPT---VFALIRKHGVTHMCGAPIVLNLLSSSPEA--KQLDRP 303
G GAT + + PT + ++ KH V + AP + L + + + DR
Sbjct: 319 GPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRS 378
Query: 304 -VRIL-TAGSP------------------PPAPVLLRTESLGFIVSHGYGKTEIAGVNVS 343
+RIL + G P P +TE+ GF+++ G E+
Sbjct: 379 SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIEL---KAG 435
Query: 344 CAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSL 403
A +P + PA L +G G TE ++V ++ GQ R
Sbjct: 436 SATRPFFGVQPA-----LVDNEGHPQEGATEGNLV-----ITDSWPGQAR---------T 476
Query: 404 MLGYLKDPEATSKCMKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVL 463
+ G + E T Y++GD DGY I R DV+ G + + EIES L
Sbjct: 477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 464 YSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPK 523
+HP + EAAVVG P + A+V+L G + + E + + R I P
Sbjct: 537 VAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAE--VRNWVRKEIGPLATPD 594
Query: 524 TVVFIDELPKTATGKVQKYVLGDIA 548
+ + D LPKT +GK+ + +L IA
Sbjct: 595 VLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 129/570 (22%), Positives = 220/570 (38%), Gaps = 65/570 (11%)
Query: 20 IERAATACDDCPSIIY--NDTTYTWSQTYRRCL----QLASSLS-SFGINPGHVVSVIAP 72
++R A + +II+ ++ +S TY+ L Q+A L+ S G+ G V+V P
Sbjct: 88 VDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMP 147
Query: 73 NIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFV-DHXXXXXXXXXXXX 131
+P A+ GAI + + + ++ + +SK+V D
Sbjct: 148 MVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKR 207
Query: 132 FPPHS--KTPKLVLITDDKEXXXXXXXXXXXXXADFVDTYENMLAKGDPQFSWVRPKSDL 189
+ +TP + + ++ D+ K + P
Sbjct: 208 IVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATE-----KKKYKTYYPCTPVDSE 262
Query: 190 DPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGW---- 245
DP+ L YT G+T APKGV + + A+ ++ Q + +T + GW
Sbjct: 263 DPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTA---GDIGWITGH 319
Query: 246 -SFTWGAAVVGATNVCLRKFDAPTVFA----LIRKHGVTHMCGAPIVLNLLSSSPEAKQL 300
+G + G + A ++ +I +H VT AP L LL + ++
Sbjct: 320 TYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIE 379
Query: 301 DRPVRIL----TAGSPPPAPVLLRTESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPAR 356
+ ++ L + G P A V S GK EI V+ + + +
Sbjct: 380 NHSLKSLRCLGSVGEPIAAEVWE-------WYSEKIGKNEIPIVDTYWQTESGSHLVTPL 432
Query: 357 ERASLKARQGVRTIGLTEVD--IVDPETG-----------LSVKRDGQTRGEIVMRGGSL 403
+ G + +D ++DP TG L+VK + + +
Sbjct: 433 AGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDR 492
Query: 404 MLGYLKDPEATSKCMKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVL 463
L +P G Y+TGD DGY+ I R DV+ G +S+ EIE+ +
Sbjct: 493 YLDTYLNPYP-------GYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAI 545
Query: 464 YSHPMVNEAAVVGRPDPFWQEIPCAFVSLK------TGTDSGGMMTTEKDIIQYCRARIP 517
P+V E AVVG D + AFV LK T TD + +K ++ R I
Sbjct: 546 IEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDD-ELQDIKKHLVFTVRKDIG 604
Query: 518 RYMVPKTVVFIDELPKTATGKVQKYVLGDI 547
+ PK ++ +D+LPKT +GK+ + +L I
Sbjct: 605 PFAAPKLIILVDDLPKTRSGKIMRRILRKI 634
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 129/565 (22%), Positives = 218/565 (38%), Gaps = 63/565 (11%)
Query: 20 IERAATACDDCPSIIY--NDTTYT----WSQTYRRCLQLASSLSSFGINPGHVVSVIAPN 73
++R D +II+ +DT+ + + + +R + A++L GI G VV++ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 74 IPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFV--DHXXXXXXXXXXXX 131
+P A GA+ + I ++ + S S+LV +
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 132 FPPHSKTPKLVLITDDKEXXXXXXXXXXXXXADFVDTYENMLAKGDPQFSWVRPKSDLDP 191
K P + + D + +++ K P+ + DP
Sbjct: 202 VDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDL--WWRDLIEKASPEHQ-PEAMNAEDP 258
Query: 192 MVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLW-TLPMFHNNGWSFT-W 249
+ + YT G+T PKGV+ + + A + + W T + G S+ +
Sbjct: 259 LFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLY 318
Query: 250 GAAVVGATNVCLRKF-DAPT---VFALIRKHGVTHMCGAPIVLNLLSSSPEA--KQLDRP 303
G GAT + + PT + ++ KH V + AP + L + + + DR
Sbjct: 319 GPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRS 378
Query: 304 -VRIL-TAGSP------------------PPAPVLLRTESLGFIVSHGYGKTEIAGVNVS 343
+RIL + G P P +TE+ GF+++ G E+
Sbjct: 379 SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIEL---KAG 435
Query: 344 CAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSL 403
A +P + PA L +G G TE ++V ++ GQ R
Sbjct: 436 SATRPFFGVQPA-----LVDNEGHPQEGATEGNLV-----ITDSWPGQAR---------T 476
Query: 404 MLGYLKDPEATSKCMKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVL 463
+ G + E T Y++GD DGY I R DV+ G + + EIES L
Sbjct: 477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 464 YSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPK 523
+HP + EAAVVG P + A+V+L G + + E + + R I P
Sbjct: 537 VAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAE--VRNWVRKEIGPLATPD 594
Query: 524 TVVFIDELPKTATGKVQKYVLGDIA 548
+ + D LPKT +GK+ + +L IA
Sbjct: 595 VLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 101/358 (28%), Positives = 163/358 (45%), Gaps = 30/358 (8%)
Query: 196 YTWGTTSAPKGVVQCYKAFFIIA-VDSLIDWVVPKQSVLLWTLPMFH----NNGWSFTWG 250
Y+ G+T PKG V + + A + + + + V+ +F NG +F
Sbjct: 190 YSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLS 249
Query: 251 AAVVGATNVCL-RKFDAPTVFALIRKHGVTHMCGAP-IVLNLLSSSPEAKQLDRPVRILT 308
VGAT + + + A +FA + +H T G P + N+L S + D +RI T
Sbjct: 250 ---VGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICT 306
Query: 309 -AGSPPPAPVLLR-TESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQG 366
AG P + R T G + G G TE+ + +S N+ A E +
Sbjct: 307 SAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLS-------NRAGAVEYGTTG---- 355
Query: 367 VRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCMKDGRYYTG 426
R + E+++ D E G +V DG+ G++ ++G S + Y + E + +G
Sbjct: 356 -RPVPGYEIELRD-EAGHAVP-DGEV-GDLYIKGPSAAVMYWNNREKSRATFLGEWIRSG 411
Query: 427 DVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIP 486
D P+G RS D++ G+ +S E+E VL H V EAAVVG D
Sbjct: 412 DKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVG-VDHGGLVKT 470
Query: 487 CAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVL 544
AFV LK ++ E + + + R+ + P+ +VF+D+LPKTATGK+Q++ L
Sbjct: 471 RAFVVLKREFAPSEILAEE--LKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKL 526
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 128/565 (22%), Positives = 217/565 (38%), Gaps = 63/565 (11%)
Query: 20 IERAATACDDCPSIIY--NDTTYT----WSQTYRRCLQLASSLSSFGINPGHVVSVIAPN 73
++R D +II+ +DT+ + + + +R + A++L GI G VV++ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 74 IPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFV--DHXXXXXXXXXXXX 131
+P A GA+ + I ++ + S S+LV +
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 132 FPPHSKTPKLVLITDDKEXXXXXXXXXXXXXADFVDTYENMLAKGDPQFSWVRPKSDLDP 191
K P + + D + +++ K P+ + DP
Sbjct: 202 VDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDL--WWRDLIEKASPEHQ-PEAMNAEDP 258
Query: 192 MVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLW-TLPMFHNNGWSFT-W 249
+ + YT G+T PKGV+ + + A + + W T + G S+ +
Sbjct: 259 LFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLY 318
Query: 250 GAAVVGATNVCLRKF-DAPT---VFALIRKHGVTHMCGAPIVLNLLSSSPEA--KQLDRP 303
G GAT + + PT + ++ KH V + AP + L + + + DR
Sbjct: 319 GPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRS 378
Query: 304 -VRIL-TAGSP------------------PPAPVLLRTESLGFIVSHGYGKTEIAGVNVS 343
+RIL + G P P +TE+ GF+++ G E+
Sbjct: 379 SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIEL---KAG 435
Query: 344 CAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSL 403
A +P + PA L +G G TE ++V ++ GQ R
Sbjct: 436 SATRPFFGVQPA-----LVDNEGHPQEGATEGNLV-----ITDSWPGQAR---------T 476
Query: 404 MLGYLKDPEATSKCMKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVL 463
+ G + E T Y++GD DGY I R DV+ G + + EIES L
Sbjct: 477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 464 YSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPK 523
+HP + EAAVVG P + A+V+L G + + E + + R I P
Sbjct: 537 VAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAE--VRNWVRKEIGPLATPD 594
Query: 524 TVVFIDELPKTATGKVQKYVLGDIA 548
+ + D LPKT +G + + +L IA
Sbjct: 595 VLHWTDSLPKTRSGAIMRRILRKIA 619
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 128/565 (22%), Positives = 217/565 (38%), Gaps = 63/565 (11%)
Query: 20 IERAATACDDCPSIIY--NDTTYT----WSQTYRRCLQLASSLSSFGINPGHVVSVIAPN 73
++R D +II+ +DT+ + + + +R + A++L GI G VV++ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 74 IPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFV--DHXXXXXXXXXXXX 131
+P A GA+ + I ++ + S S+LV +
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 132 FPPHSKTPKLVLITDDKEXXXXXXXXXXXXXADFVDTYENMLAKGDPQFSWVRPKSDLDP 191
K P + + D + +++ K P+ + DP
Sbjct: 202 VDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDL--WWRDLIEKASPEHQ-PEAMNAEDP 258
Query: 192 MVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLW-TLPMFHNNGWSFT-W 249
+ + YT G+T PKGV+ + + A + + W T + G S+ +
Sbjct: 259 LFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLY 318
Query: 250 GAAVVGATNVCLRKF-DAPT---VFALIRKHGVTHMCGAPIVLNLLSSSPEA--KQLDRP 303
G GAT + + PT + ++ KH V + AP + L + + + DR
Sbjct: 319 GPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRS 378
Query: 304 -VRIL-TAGSP------------------PPAPVLLRTESLGFIVSHGYGKTEIAGVNVS 343
+RIL + G P P +TE+ GF+++ G E+
Sbjct: 379 SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIEL---KAG 435
Query: 344 CAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSL 403
A +P + PA L +G G TE ++V ++ GQ R
Sbjct: 436 SATRPFFGVQPA-----LVDNEGHPQEGATEGNLV-----ITDSWPGQAR---------T 476
Query: 404 MLGYLKDPEATSKCMKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVL 463
+ G + E T Y++GD DGY I R DV+ G + + EIES L
Sbjct: 477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 464 YSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPK 523
+HP + EAAVVG P + A+V+L G + + E + + I P
Sbjct: 537 VAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAE--VRNWVEKEIGPLATPD 594
Query: 524 TVVFIDELPKTATGKVQKYVLGDIA 548
+ + D LPKT +GK+ + +L IA
Sbjct: 595 VLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 128/565 (22%), Positives = 217/565 (38%), Gaps = 63/565 (11%)
Query: 20 IERAATACDDCPSIIY--NDTTYT----WSQTYRRCLQLASSLSSFGINPGHVVSVIAPN 73
++R D +II+ +DT+ + + + +R + A++L GI G VV++ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 74 IPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFV--DHXXXXXXXXXXXX 131
+P A GA+ + I ++ + S S+LV +
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 132 FPPHSKTPKLVLITDDKEXXXXXXXXXXXXXADFVDTYENMLAKGDPQFSWVRPKSDLDP 191
K P + + D + +++ K P+ + DP
Sbjct: 202 VDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDL--WWRDLIEKASPEHQ-PEAMNAEDP 258
Query: 192 MVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLW-TLPMFHNNGWSFT-W 249
+ + YT G+T PKGV+ + + A + + W T + G S+ +
Sbjct: 259 LFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLY 318
Query: 250 GAAVVGATNVCLRKF-DAPT---VFALIRKHGVTHMCGAPIVLNLLSSSPEA--KQLDRP 303
G GAT + + PT + ++ KH V + AP + L + + + DR
Sbjct: 319 GPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRS 378
Query: 304 -VRIL-TAGSP------------------PPAPVLLRTESLGFIVSHGYGKTEIAGVNVS 343
+RIL + G P P +TE+ GF+++ G E+
Sbjct: 379 SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIEL---KAG 435
Query: 344 CAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSL 403
A +P + PA L +G G TE ++V ++ GQ R
Sbjct: 436 SATRPFFGVQPA-----LVDNEGHPQEGATEGNLV-----ITDSWPGQAR---------T 476
Query: 404 MLGYLKDPEATSKCMKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVL 463
+ G + E T Y++GD DGY I R DV+ G + + EIES L
Sbjct: 477 LFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 464 YSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPK 523
+HP + EAAVVG P + A+V+L G + + E + + I P
Sbjct: 537 VAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAE--VRNWVAKEIGPLATPD 594
Query: 524 TVVFIDELPKTATGKVQKYVLGDIA 548
+ + D LPKT +GK+ + +L IA
Sbjct: 595 VLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 124/556 (22%), Positives = 213/556 (38%), Gaps = 77/556 (13%)
Query: 8 PANSCPLTPLGF-IERAATACDDCPSIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHV 66
PA + PL + + A A D P++ Y+ T ++ + ++A L G G V
Sbjct: 457 PAQAHETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSV 516
Query: 67 VSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHXXXXXXX 126
V++ + V +GA + ++ +L IS +L S + +
Sbjct: 517 VALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA 576
Query: 127 XXXXXFPPHSKTPKLVLITDDKEXXXXXXXXXXXXXADFVDTYENMLAKGDPQFSWVRPK 186
P++ T L DD+ F + + DP
Sbjct: 577 EL-----PYTGT---TLFIDDQ--------------TRFEEQASDPATAIDPN------- 607
Query: 187 SDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWS 246
DP + YT GTT PKG + + I + +D++ ++ + + ++
Sbjct: 608 ---DPAYIMYTSGTTGKPKGNITTHAN--IQGLVKHVDYMAFSDQDTFLSVSNYAFDAFT 662
Query: 247 FTWGAAVVGATNVCLRK----FDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQLDR 302
F + A+++ A + + D + LI + V M + NLL+ + E +
Sbjct: 663 FDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWM--K 720
Query: 303 PVRILTAG----SPPPAPVLLRTESLGFIVSHGYGKTE---IAGVNVSCAWKPKWNKLPA 355
+R + G S P LR G +++ YG TE A +V + LP
Sbjct: 721 GLRCILFGGERASVPHVRKALRIMGPGKLIN-CYGPTEGTVFATAHVVHDLPDSISSLPI 779
Query: 356 RERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATS 415
+ I V I++ ++ L + GE+ + G + GY+ + T
Sbjct: 780 G-----------KPISNASVYILNEQSQL---QPFGAVGELCISGMGVSKGYVNRADLTK 825
Query: 416 KCM-----KDGR--YYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPM 468
+ K G Y TGD+ PDG +E R D + G I EIE L +P
Sbjct: 826 EKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPG 885
Query: 469 VNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFI 528
V +A VV A++ +T + +D+ + + ++P YMVP+T F+
Sbjct: 886 VKDAVVVADRHESGDASINAYLVNRT-------QLSAEDVKAHLKKQLPAYMVPQTFTFL 938
Query: 529 DELPKTATGKVQKYVL 544
DELP T GKV K +L
Sbjct: 939 DELPLTTNGKVNKRLL 954
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 123/551 (22%), Positives = 207/551 (37%), Gaps = 71/551 (12%)
Query: 8 PANSCPLTPLGFIERAATACDDCPSIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVV 67
PA +C E A D ++++ T+ R +LA L G+ PG +V
Sbjct: 72 PAGACVHE---LFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLV 128
Query: 68 SVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHXXXXXXXX 127
V M AV +G + ++ + +++ L+ + + L+
Sbjct: 129 GVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL-- 186
Query: 128 XXXXFPPHSKTPKLVLITDDKEXXXXXXXXXXXXXADFVDTYENMLAKGDPQFSWVRPKS 187
T L +D+ D LA G V P+
Sbjct: 187 ----------TGTTTLYVEDEAAS---------------DAPAGNLATG------VGPE- 214
Query: 188 DLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSF 247
D + +T G+T PKGV+ ++A + P + V L P+ +
Sbjct: 215 --DVACVMFTSGSTGRPKGVMSPHRALTGTYLGQDYAGFGPDE-VFLQCSPVSWDAFGLE 271
Query: 248 TWGAAVVGATNVCL--RKFDAPTVFALIRKHGVTHMCGAPIVLN-LLSSSPEAKQLDRPV 304
+GA + GA V + D + L+ +HGVT + + + N L+ PEA + R
Sbjct: 272 LFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVR-- 329
Query: 305 RILTAGSPPPAPVLL--RTESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLK 362
+T G P P + R + + +GYG E G A + A + +
Sbjct: 330 YAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHA-------VVAGDLSGTA 382
Query: 363 ARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCM---- 418
GV G ++D + L +G GE+ + G L GY+ P T++
Sbjct: 383 LPIGVPLAG-KRAYVLDDD--LKPAANGAL-GELYVAGAGLAHGYVSRPALTAERFVADP 438
Query: 419 -----KDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAA 473
+ Y TGD+ DG LE R+ D + G + E+E+ L HP V +AA
Sbjct: 439 FAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAA 498
Query: 474 VVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPK 533
V+ + + A+V + ++ ++ +P YMVP V +DELP+
Sbjct: 499 VLAQDSRLGDKQLVAYVV----AERADAPPDAAELRRHVAEALPAYMVPVECVPVDELPR 554
Query: 534 TATGKVQKYVL 544
T GK+ + L
Sbjct: 555 TPNGKLDRRAL 565
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 82/180 (45%), Gaps = 19/180 (10%)
Query: 373 TEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCMKDG-------RYYT 425
T++ IVD L +K G+ GE+ + G L GY K PE TS+ D Y T
Sbjct: 355 TQIYIVDE--NLQLKSVGEA-GELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKT 411
Query: 426 GDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEI 485
GD DG +E R + + G + E+ES+L H ++E AV D Q
Sbjct: 412 GDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPY 471
Query: 486 PCA-FVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVL 544
CA FVS K + + Q+ +P YM+P + +D++P T+ GK+ + L
Sbjct: 472 LCAYFVSEK--------HIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQL 523
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 100/376 (26%), Positives = 154/376 (40%), Gaps = 57/376 (15%)
Query: 196 YTWGTTSAPKGV-VQCYKAFFIIA-VDSLIDWVVPKQSVLLWTLPMFHNNGWSFT----W 249
YT GTT PKGV V+ ++A S+ D+ + W L FH+ + F+ W
Sbjct: 182 YTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDR----WLL--FHSLSFDFSVWEIW 235
Query: 250 GAAVVGATNVCLRKFDAPT---VFALIRKHGVTHMCGAPIVLNLLSSSPEAKQLD-RPVR 305
GA GA V L + A T A+I GVT + P L+ + D +R
Sbjct: 236 GAFSTGAELVVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFLALTEAAVRGGRDVSGLR 295
Query: 306 ILTAGSPPPAPVLLRTESLGFIVS-----HGYG----KTEIAGVNVSCAWKPKWNKLPAR 356
+ G +LR + F + +GYG ++ A+ + + R
Sbjct: 296 YVIFGGEKLTAPMLRPWAKAFGLDRPRLVNGYGITETTVFTTFEEITEAYLAQDASIIGR 355
Query: 357 ERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATS- 415
S G R +G D+ ETG E+ + G L GYL+ PE T+
Sbjct: 356 ALPSF----GTRVVGDDGRDVAPGETG-----------ELWLSGAQLAEGYLRRPELTAE 400
Query: 416 --------KCMKDGRYY-TGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSH 466
K + RYY TGD+ PDG + R+ I G I ++IE+ + H
Sbjct: 401 KFPEVTDEKTGESVRYYRTGDLVSELPDGRFAYEGRADLQIKLRGYRIELSDIETAVRRH 460
Query: 467 PMVNEAAVVGRP-DPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTV 525
V +A V R P + CA+V+ + G TT +++ + + +P YM P
Sbjct: 461 DDVVDAVVTVREFKPGDLRLVCAYVARE------GSATTARELRNHIKTLLPAYMHPARY 514
Query: 526 VFIDELPKTATGKVQK 541
+ + LP+T GKV +
Sbjct: 515 LPLPGLPRTVNGKVDR 530
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 8/159 (5%)
Query: 393 RGEIVMRGGSLMLGYLKDPEATSKCM--KDGR--YYTGDVGMMHPDGYLEIKDRSKDVII 448
+GEIV+ G S+ GYL +PE T K +G+ Y TGD G + DG + + R I
Sbjct: 344 KGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ-DGQIFCQGRLDFQIK 402
Query: 449 SGGENISSTEIESVLYSHPMVNEAAVV-GRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKD 507
G + EIE + V A V+ +P+ + + A V + + +T+
Sbjct: 403 LHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSA-- 460
Query: 508 IIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGD 546
I + A +P YM+P+ ++ D + TA GK+ + +G+
Sbjct: 461 IKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGE 499
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%)
Query: 393 RGEIVMRGGSLMLGYLKDPEATSKCMKDGR----YYTGDVGMMHPDGYLEIKDRSKDVII 448
+GEI++ G ++ GYL +PE T++ + Y+TGD+G + D L R I
Sbjct: 348 QGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIK 407
Query: 449 SGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQ-EIPCAFVSLKTGTDS--GGMMTTE 505
G I ++ L PMV A V R + + + A++ +K G +
Sbjct: 408 YAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELT 467
Query: 506 KDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQ-KYVLGDIAN 549
K I + + YM+P ++ D LP T GK+ K ++ ++ N
Sbjct: 468 KAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNN 512
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 87/362 (24%), Positives = 140/362 (38%), Gaps = 33/362 (9%)
Query: 196 YTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVG 255
YT G+T PKGV Y ++ D+ + V L P + + + V G
Sbjct: 151 YTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTG 210
Query: 256 ATNVCLRK---FDAPTVFALIRKHGVTHMCGAPIV--LNLLSSSPEAKQLDRPVRILTAG 310
T + K +FA + + + P + L+ +S L L G
Sbjct: 211 GTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCG 270
Query: 311 SPPPAPVL--LRTESLGFIVSHGYGKTE----IAGVNVSCAWKPKWNKLPARERASLKAR 364
P V L + + YG TE + G++V+ ++ LP +
Sbjct: 271 EVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVG-----YCK 325
Query: 365 QGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKC--MKDGR 422
R + + E + P DG+ +GEIV+ G S+ +GYL PE T K M DG
Sbjct: 326 SDCRLLIMKEDGTIAP--------DGE-KGEIVIVGPSVSVGYLGSPELTEKAFTMIDGE 376
Query: 423 --YYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVG-RPD 479
Y TGD G + +G L R I G + EIE L + V A +V +
Sbjct: 377 RAYKTGDAGYVE-NGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKG 435
Query: 480 PFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKV 539
+ + V + + +T+ I + R+P YM+P+ ++ +P T GKV
Sbjct: 436 EKYDYLLAVVVPGEHSFEKEFKLTSA--IKKELNERLPNYMIPRKFMYQSSIPMTPNGKV 493
Query: 540 QK 541
+
Sbjct: 494 DR 495
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 87/362 (24%), Positives = 140/362 (38%), Gaps = 33/362 (9%)
Query: 196 YTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVG 255
YT G+T PKGV Y ++ D+ + V L P + + + V G
Sbjct: 151 YTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTG 210
Query: 256 ATNVCLRK---FDAPTVFALIRKHGVTHMCGAPIV--LNLLSSSPEAKQLDRPVRILTAG 310
T + K +FA + + + P + L+ +S L L G
Sbjct: 211 GTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCG 270
Query: 311 SPPPAPVL--LRTESLGFIVSHGYGKTE----IAGVNVSCAWKPKWNKLPARERASLKAR 364
P V L + + YG TE + G++V+ ++ LP +
Sbjct: 271 EVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVG-----YCK 325
Query: 365 QGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKC--MKDGR 422
R + + E + P DG+ +GEIV+ G S+ +GYL PE T K M DG
Sbjct: 326 SDCRLLIMKEDGTIAP--------DGE-KGEIVIVGPSVSVGYLGSPELTEKAFTMIDGE 376
Query: 423 --YYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVG-RPD 479
Y TGD G + +G L R I G + EIE L + V A +V +
Sbjct: 377 RAYKTGDAGYVE-NGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKG 435
Query: 480 PFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKV 539
+ + V + + +T+ I + R+P YM+P+ ++ +P T GKV
Sbjct: 436 EKYDYLLAVVVPGEHSFEKEFKLTSA--IKKELNERLPNYMIPRKFMYQSSIPMTPNGKV 493
Query: 540 QK 541
+
Sbjct: 494 DR 495
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 86/382 (22%), Positives = 142/382 (37%), Gaps = 47/382 (12%)
Query: 181 SWVRPKSDLDPMV-LNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPM 239
S RP D + +N++ GTT PK + + + + P+ L+ + P+
Sbjct: 155 SVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLGQSFLAFAPQMRFLVNS-PL 213
Query: 240 FHNNGWSFTWGAAVVGATNVC--LRKFDAPTVFALIRKHGV-THMCGAPIVLNLLSSSPE 296
+ WGA + G V L D + LI + G + A + L+ P+
Sbjct: 214 SFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPD 273
Query: 297 AKQLDRPVRILTAGSPPPAP----VLLRTESLGFIVSHGYGKTEIAGVNVSCAWKPKWNK 352
L ++LT G P LLR L + +GYG TE +C +
Sbjct: 274 C--LGGLRQLLTGGDILSVPHVRRALLRHPRLHLV--NGYGPTE--NTTFTCCHVVTDDD 327
Query: 353 LPARERASLKARQGVRTIGLTE--VDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKD 410
L + KA G + L E +I +P+ GEIV G L GY D
Sbjct: 328 LEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRA----------GEIVAFGAGLAQGYRND 377
Query: 411 PEATSKCMKD----GR----YYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESV 462
T + GR Y TGD G L R + G + +E
Sbjct: 378 AARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQR 437
Query: 463 LYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVP 522
P + + A++ R +++ CA+ +G + + +++ ++P + P
Sbjct: 438 FRRQPGILDCALLVRERNGVKQLLCAW--------TGKADASPQALLR----QLPTWQRP 485
Query: 523 KTVVFIDELPKTATGKVQKYVL 544
V ++ LP TA GK+ + L
Sbjct: 486 HACVRVEALPLTAHGKLDRAAL 507
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 380 PETGLSVKRDG------QTRGEIVMRGGSLMLGYLKDPEATSKCMKDGRYYTGDVGMMHP 433
PE G+ ++ + + G I + G SL GY D + + G TGD+G +
Sbjct: 391 PEHGIEIRNEAGXPVAERVVGHICISGPSLXSGYFGDQVSQDEIAATGWLDTGDLGYLL- 449
Query: 434 DGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVG 476
DGYL + R KD+II G NI +IE + P ++ +
Sbjct: 450 DGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIA 492
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 372 LTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEAT-----SKCMKDGR---- 422
+ EV I+DP+T + D GEI ++ S+ GY PE T K D R
Sbjct: 380 IQEVKIIDPDTLIPC--DFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIY 437
Query: 423 YYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPM 468
TGD+G +H + L + R KD+II G+N +IE L P+
Sbjct: 438 LRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLXHSPL 482
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 95/398 (23%), Positives = 151/398 (37%), Gaps = 58/398 (14%)
Query: 188 DLDPMVLNYTWGTTSAPKGVVQCYKAF--FIIAVDSLIDWVVPKQSVLLWTLPMF----- 240
+LD +L YT G+T PKGV F A LI V PK S+ L + F
Sbjct: 175 NLDAYLL-YTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPK-SLELGGVGKFLCLAS 232
Query: 241 -----HNNGWSFTWGAAVVGATNVCLRKFD-APTVFALIRKHGVTHMCGAPIVLNLLSSS 294
H W + T L D P F R+ GVTH P +L+
Sbjct: 233 RAFDVHIGEXFLAWRFGLCAVTGERLSXLDDLPRTF---RELGVTHAGIVPSLLDQTGLV 289
Query: 295 PEAKQLDRPVRI-LTAGSPPPAPVLLRTESL-----GFIVSHGYGKTEIAGVNVSCAWKP 348
PE D P + L G P RT+ + + + YG TE V + C+
Sbjct: 290 PE----DAPHLVYLGVGGEKXTP---RTQQIWSSSDRVALVNVYGPTE---VTIGCS--- 336
Query: 349 KWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYL 408
LP + + +G + ++ P + VK+ GE+V+ G + GYL
Sbjct: 337 AGRILPDSDTRCIG-----HPLGDSVAHVLAPGSNEHVKKG--XAGELVIEGSLVANGYL 389
Query: 409 KDPEATSKCMKDGR--YYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSH 466
P+A C +GR Y TGD+ D + R + + G+ + E+ V+ S
Sbjct: 390 NRPDAKGFCDINGRKXYRTGDIVRXDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSL 449
Query: 467 PMVNEAAV---VGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKD-------IIQYCRARI 516
+ V + P Q + +FV+ G + ++ + Q C +
Sbjct: 450 SPTDIDVVTLLLNHPGTSKQFL-VSFVASSGAAVRGELRWINENYKEINNSLRQACEQTL 508
Query: 517 PRYMVPKTVVFIDELP-KTATGKVQKYVLGDIANSMSM 553
P Y VP ++ I +P + + K L +++S+
Sbjct: 509 PAYXVPDFIIPISFIPLRDTSAKTDAKALEHXFHTLSL 546
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 96/450 (21%), Positives = 161/450 (35%), Gaps = 67/450 (14%)
Query: 8 PANSCPLTPLGFIERAATACDDCPSIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVV 67
PA +C E A D ++++ T+ R +LA L G+ PG +V
Sbjct: 72 PAGACVHE---LFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLV 128
Query: 68 SVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHXXXXXXXX 127
V M AV +G + ++ + +++ L+ + + L+
Sbjct: 129 GVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL-- 186
Query: 128 XXXXFPPHSKTPKLVLITDDKEXXXXXXXXXXXXXADFVDTYENMLAKGDPQFSWVRPKS 187
T L +D+ D LA G V P+
Sbjct: 187 ----------TGTTTLYVEDEAAS---------------DAPAGNLATG------VGPE- 214
Query: 188 DLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSF 247
D + +T G+T PKGV+ ++A + P + V L P+ +
Sbjct: 215 --DVACVMFTSGSTGRPKGVMSPHRALTGTYLGQDYAGFGPDE-VFLQCSPVSWDAFGLE 271
Query: 248 TWGAAVVGATNVCL--RKFDAPTVFALIRKHGVTHMCGAPIVLN-LLSSSPEAKQLDRPV 304
+GA + GA V + D + L+ +HGVT + + + N L+ PEA + R
Sbjct: 272 LFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVR-- 329
Query: 305 RILTAGSPPPAPVL--LRTESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLK 362
+T G P P + R + + +GYG E G A + A + +
Sbjct: 330 YAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHA-------VVAGDLSGTA 382
Query: 363 ARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCM---- 418
GV G ++D + L +G GE+ + G L GY+ P T++
Sbjct: 383 LPIGVPLAG-KRAYVLDDD--LKPAANGAL-GELYVAGAGLAHGYVSRPALTAERFVADP 438
Query: 419 -----KDGRYYTGDVGMMHPDGYLEIKDRS 443
+ Y TGD+ DG LE R+
Sbjct: 439 FAGPGGERMYRTGDLARRRADGVLEYVGRA 468
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 39 TYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPN--------IPAMYELHFAVPMSGAI 90
T TWSQ YRR L +A LS G + G V + AP + A+ AVP+S
Sbjct: 58 TLTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQ 116
Query: 91 FNTINTRLDA 100
+ R D+
Sbjct: 117 GGVTDERSDS 126
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 39 TYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAI 90
T TWSQ YRR L +A LS G VV I A L + V GA+
Sbjct: 58 TLTWSQLYRRTLNVAQELSRCGSTGDRVV------ISAPQGLEYVVAFLGAL 103
>pdb|3QOV|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|B Chain B, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|C Chain C, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|D Chain D, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3S89|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|B Chain B, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|C Chain C, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|D Chain D, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
Length = 436
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 44/102 (43%), Gaps = 23/102 (22%)
Query: 375 VDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCMKDGRYYTGDVGMMHPD 434
V+I+DPETG V GEI G L+L L D E RY T D+ + P
Sbjct: 267 VEIIDPETGEPV-----PEGEI----GELVLTTL-DREXXPLI----RYRTRDLTRILPG 312
Query: 435 G------YL---EIKDRSKDVIISGGENISSTEIESVLYSHP 467
+L IK RS D I G NI ++E +L P
Sbjct: 313 KCPCGRTHLRIDRIKGRSDDXFIIKGVNIFPXQVEKILVQFP 354
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,435,995
Number of Sequences: 62578
Number of extensions: 667851
Number of successful extensions: 1560
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1347
Number of HSP's gapped (non-prelim): 91
length of query: 558
length of database: 14,973,337
effective HSP length: 104
effective length of query: 454
effective length of database: 8,465,225
effective search space: 3843212150
effective search space used: 3843212150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)