Query 008636
Match_columns 558
No_of_seqs 176 out of 2252
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 08:11:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008636.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008636hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 1.8E-80 6.2E-85 647.6 50.3 503 13-550 21-535 (536)
2 3g7s_A Long-chain-fatty-acid-- 100.0 1.5E-80 5E-85 650.2 49.6 508 8-553 13-545 (549)
3 1v25_A Long-chain-fatty-acid-C 100.0 1.6E-80 5.5E-85 648.3 47.3 518 7-553 11-539 (541)
4 3r44_A Fatty acyl COA syntheta 100.0 1.5E-79 5E-84 637.5 53.0 502 8-552 10-515 (517)
5 1mdb_A 2,3-dihydroxybenzoate-A 100.0 6.4E-79 2.2E-83 635.9 50.2 503 12-556 23-537 (539)
6 4fuq_A Malonyl COA synthetase; 100.0 5.9E-79 2E-83 630.7 47.8 492 17-552 3-502 (503)
7 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.9E-78 6.6E-83 627.9 48.7 481 14-549 2-503 (504)
8 3ivr_A Putative long-chain-fat 100.0 9.9E-80 3.4E-84 638.7 38.4 502 10-556 2-507 (509)
9 3o83_A Peptide arylation enzym 100.0 2.2E-79 7.6E-84 640.1 40.7 504 11-553 27-543 (544)
10 3etc_A AMP-binding protein; ad 100.0 4.3E-78 1.5E-82 633.3 49.6 505 13-550 54-579 (580)
11 2d1s_A Luciferase, luciferin 4 100.0 9.7E-78 3.3E-82 627.8 51.9 503 14-553 25-546 (548)
12 3rix_A Luciferase, luciferin 4 100.0 2.2E-79 7.5E-84 641.5 38.6 511 8-553 14-544 (550)
13 3fce_A D-alanine--poly(phospho 100.0 1.7E-77 6E-82 622.3 44.6 498 14-556 1-510 (512)
14 3c5e_A Acyl-coenzyme A synthet 100.0 1.6E-76 5.6E-81 620.6 51.8 504 15-552 39-564 (570)
15 1pg4_A Acetyl-COA synthetase; 100.0 1E-76 3.5E-81 631.4 50.0 512 15-551 77-622 (652)
16 3e7w_A D-alanine--poly(phospho 100.0 2.1E-76 7.3E-81 613.6 51.2 495 14-554 1-507 (511)
17 3ipl_A 2-succinylbenzoate--COA 100.0 2.5E-77 8.5E-82 619.8 41.7 497 14-550 1-497 (501)
18 3rg2_A Enterobactin synthase c 100.0 9.3E-76 3.2E-80 621.7 53.6 499 10-551 23-535 (617)
19 1ry2_A Acetyl-coenzyme A synth 100.0 4E-76 1.4E-80 627.0 49.5 515 15-551 83-638 (663)
20 1amu_A GRSA, gramicidin synthe 100.0 7.9E-77 2.7E-81 622.1 43.1 481 13-549 38-528 (563)
21 4gr5_A Non-ribosomal peptide s 100.0 3.9E-77 1.3E-81 626.8 37.4 484 12-548 73-569 (570)
22 2v7b_A Benzoate-coenzyme A lig 100.0 4.4E-75 1.5E-79 606.7 52.0 497 15-546 25-528 (529)
23 3l8c_A D-alanine--poly(phospho 100.0 8.5E-76 2.9E-80 611.3 43.5 500 13-556 3-518 (521)
24 4dg8_A PA1221; ANL superfamily 100.0 6.4E-76 2.2E-80 620.0 41.3 480 11-552 24-515 (620)
25 3tsy_A Fusion protein 4-coumar 100.0 1.4E-75 4.8E-80 651.9 40.2 514 12-554 59-586 (979)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 1.4E-74 4.9E-79 597.8 35.0 475 11-546 19-504 (505)
27 3ite_A SIDN siderophore synthe 100.0 7.1E-73 2.4E-77 594.5 34.9 500 9-553 15-546 (562)
28 3kxw_A Saframycin MX1 syntheta 100.0 1.2E-72 4.1E-77 597.3 35.2 509 10-555 7-572 (590)
29 2vsq_A Surfactin synthetase su 100.0 3.4E-72 1.2E-76 639.6 40.0 496 3-550 453-960 (1304)
30 3gqw_A Fatty acid AMP ligase; 100.0 3E-71 1E-75 585.3 41.9 503 12-556 19-569 (576)
31 3t5a_A Long-chain-fatty-acid-- 100.0 2.9E-58 1E-62 475.0 29.9 403 6-442 16-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 1.2E-53 4.2E-58 420.1 22.1 316 188-552 36-356 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 8.8E-48 3E-52 390.9 24.7 327 186-543 82-430 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 2.9E-47 9.8E-52 388.0 24.0 329 186-545 89-439 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 4.9E-47 1.7E-51 385.5 23.4 326 186-543 87-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 1.2E-29 4E-34 251.6 17.9 234 186-452 88-368 (369)
37 3gxs_A Phenylacetate-coenzyme 99.5 3.7E-14 1.3E-18 112.4 7.2 99 441-542 1-102 (109)
38 3lax_A Phenylacetate-coenzyme 99.5 4E-14 1.4E-18 112.5 6.2 98 441-541 1-101 (109)
39 4eql_A 4-substituted benzoates 98.8 4.5E-08 1.6E-12 99.4 14.6 74 385-476 380-465 (581)
40 4b2g_A GH3-1 auxin conjugating 98.8 3.9E-08 1.3E-12 100.0 12.4 90 385-493 392-493 (609)
41 4epl_A Jasmonic acid-amido syn 98.7 1.2E-07 4E-12 96.1 15.0 90 385-493 387-488 (581)
42 3qov_A Phenylacetate-coenzyme 92.5 0.98 3.3E-05 44.6 12.0 93 38-131 104-198 (436)
43 2y27_A Phenylacetate-coenzyme 92.2 1.4 4.7E-05 43.6 12.7 91 38-129 108-200 (437)
44 2y4o_A Phenylacetate-coenzyme 92.0 1.4 4.8E-05 43.6 12.5 91 38-129 110-202 (443)
45 1mdb_A 2,3-dihydroxybenzoate-A 83.6 13 0.00045 37.6 13.4 99 27-129 180-290 (539)
46 2d1s_A Luciferase, luciferin 4 79.3 7.7 0.00026 39.5 9.8 97 29-127 192-299 (548)
47 3ipl_A 2-succinylbenzoate--COA 77.7 13 0.00046 37.1 11.0 97 27-127 161-267 (501)
48 3r44_A Fatty acyl COA syntheta 77.6 12 0.00043 37.5 10.8 95 28-127 169-274 (517)
49 3o83_A Peptide arylation enzym 77.6 10 0.00036 38.4 10.2 98 27-128 189-298 (544)
50 4gs5_A Acyl-COA synthetase (AM 76.4 3.7 0.00013 39.2 6.1 103 15-126 26-138 (358)
51 3hgu_A EHPF; phenazine, antibi 75.8 4.8 0.00016 38.5 6.7 85 38-124 109-218 (369)
52 3fce_A D-alanine--poly(phospho 75.5 11 0.00039 37.8 9.8 96 27-125 142-249 (512)
53 3rix_A Luciferase, luciferin 4 74.1 13 0.00043 37.9 9.7 89 38-127 208-297 (550)
54 3rg2_A Enterobactin synthase c 73.8 33 0.0011 35.3 13.0 99 28-130 183-293 (617)
55 3e7w_A D-alanine--poly(phospho 72.9 20 0.00069 35.9 10.9 97 27-126 141-249 (511)
56 3kxw_A Saframycin MX1 syntheta 70.4 31 0.0011 35.2 11.8 98 27-127 165-276 (590)
57 1v25_A Long-chain-fatty-acid-C 68.1 22 0.00076 35.9 10.0 102 27-129 174-285 (541)
58 3g7s_A Long-chain-fatty-acid-- 66.4 41 0.0014 34.0 11.6 103 187-292 32-139 (549)
59 3ni2_A 4-coumarate:COA ligase; 65.4 30 0.001 34.8 10.3 97 187-291 35-135 (536)
60 3tbh_A O-acetyl serine sulfhyd 64.0 30 0.001 32.4 9.2 89 30-120 36-127 (334)
61 3c5e_A Acyl-coenzyme A synthet 63.9 40 0.0014 34.3 10.9 98 27-127 204-313 (570)
62 3ezx_A MMCP 1, monomethylamine 63.1 40 0.0014 29.2 9.2 91 231-321 93-195 (215)
63 1t5h_X 4-chlorobenzoyl COA lig 59.6 68 0.0023 31.8 11.7 97 187-291 15-117 (504)
64 3ivr_A Putative long-chain-fat 57.9 59 0.002 32.4 10.8 96 27-127 158-264 (509)
65 3t5a_A Long-chain-fatty-acid-- 56.8 91 0.0031 30.5 12.0 106 187-294 37-149 (480)
66 3nyq_A Malonyl-COA ligase; A/B 55.9 40 0.0014 33.6 9.1 96 27-127 153-259 (505)
67 4fuq_A Malonyl COA synthetase; 54.2 74 0.0025 31.6 10.8 79 208-287 28-110 (503)
68 3etc_A AMP-binding protein; ad 53.9 76 0.0026 32.3 11.0 94 187-285 69-166 (580)
69 1amu_A GRSA, gramicidin synthe 53.4 78 0.0027 32.0 10.9 83 208-291 64-150 (563)
70 2v7b_A Benzoate-coenzyme A lig 52.0 53 0.0018 32.9 9.4 83 208-291 48-134 (529)
71 3l8c_A D-alanine--poly(phospho 51.8 90 0.0031 31.0 11.1 99 27-126 143-253 (521)
72 4gr5_A Non-ribosomal peptide s 51.1 37 0.0013 34.5 8.1 97 27-127 212-319 (570)
73 1pg4_A Acetyl-COA synthetase; 51.0 1E+02 0.0035 31.8 11.6 94 188-285 90-187 (652)
74 1ry2_A Acetyl-coenzyme A synth 50.7 84 0.0029 32.6 10.8 96 187-286 95-195 (663)
75 3vc3_A Beta-cyanoalnine syntha 49.4 76 0.0026 29.7 9.3 90 29-120 50-142 (344)
76 4dg8_A PA1221; ANL superfamily 48.6 40 0.0014 34.7 7.9 97 27-127 162-269 (620)
77 3tsy_A Fusion protein 4-coumar 46.9 89 0.003 34.2 10.8 94 187-288 74-171 (979)
78 1z7w_A Cysteine synthase; tran 43.0 1.1E+02 0.0037 28.3 9.2 65 56-120 57-122 (322)
79 4aec_A Cysteine synthase, mito 40.5 1.1E+02 0.0039 29.6 9.1 64 56-119 165-229 (430)
80 2q3b_A Cysteine synthase A; py 37.1 1.6E+02 0.0055 26.9 9.4 88 30-120 32-122 (313)
81 2egu_A Cysteine synthase; O-ac 36.9 1.6E+02 0.0055 26.8 9.4 89 29-120 29-120 (308)
82 3ju7_A Putative PLP-dependent 36.7 76 0.0026 30.1 7.3 59 56-117 70-135 (377)
83 1ve1_A O-acetylserine sulfhydr 35.1 2.6E+02 0.0088 25.4 10.6 65 55-120 50-117 (304)
84 4eez_A Alcohol dehydrogenase 1 34.7 1.1E+02 0.0038 28.4 8.1 77 39-118 136-215 (348)
85 2v03_A Cysteine synthase B; py 34.3 2.1E+02 0.0073 25.9 9.7 87 30-119 26-115 (303)
86 2pqm_A Cysteine synthase; OASS 33.9 1.5E+02 0.0051 27.7 8.7 64 56-120 69-133 (343)
87 2yxb_A Coenzyme B12-dependent 33.8 1.9E+02 0.0064 23.4 8.6 86 240-327 30-123 (161)
88 3gqw_A Fatty acid AMP ligase; 33.7 1.3E+02 0.0045 30.2 9.0 84 207-291 48-142 (576)
89 2cvi_A 75AA long hypothetical 33.6 80 0.0027 22.0 5.3 47 456-517 15-61 (83)
90 4h1h_A LMO1638 protein; MCCF-l 33.0 1.1E+02 0.0039 28.3 7.6 60 60-119 8-86 (327)
91 3dwg_A Cysteine synthase B; su 31.5 2.1E+02 0.007 26.4 9.1 64 56-120 64-128 (325)
92 1o69_A Aminotransferase; struc 31.1 2E+02 0.0069 27.1 9.4 57 59-118 67-129 (394)
93 3l6b_A Serine racemase; pyrido 31.0 1E+02 0.0034 28.9 6.9 56 65-121 77-132 (346)
94 3two_A Mannitol dehydrogenase; 30.5 1.5E+02 0.0052 27.5 8.2 75 38-116 148-225 (348)
95 3ist_A Glutamate racemase; str 29.4 2.5E+02 0.0084 25.1 8.9 57 18-78 19-81 (269)
96 3tla_A MCCF; serine protease, 29.4 1.4E+02 0.0046 28.4 7.5 61 59-119 38-117 (371)
97 2vsq_A Surfactin synthetase su 29.0 86 0.0029 35.7 7.1 97 27-127 605-713 (1304)
98 2jgn_A DBX, DDX3, ATP-dependen 28.8 2.1E+02 0.0073 23.5 8.1 70 48-119 32-104 (185)
99 2jtq_A Phage shock protein E; 28.2 95 0.0033 21.6 4.9 46 38-90 22-67 (85)
100 3ijw_A Aminoglycoside N3-acety 28.1 38 0.0013 30.4 3.1 24 50-73 18-41 (268)
101 3s2e_A Zinc-containing alcohol 27.6 1.9E+02 0.0064 26.7 8.3 77 38-118 138-217 (340)
102 3ri6_A O-acetylhomoserine sulf 27.2 1.9E+02 0.0066 27.9 8.4 61 68-128 100-163 (430)
103 1y80_A Predicted cobalamin bin 27.2 2.8E+02 0.0097 23.4 9.2 94 228-321 87-189 (210)
104 1h2b_A Alcohol dehydrogenase; 27.0 2E+02 0.0067 26.9 8.3 62 55-119 176-239 (359)
105 3sr3_A Microcin immunity prote 26.9 1.9E+02 0.0064 26.9 7.9 60 60-119 9-87 (336)
106 3sma_A FRBF; N-acetyl transfer 26.1 43 0.0015 30.3 3.1 29 38-73 20-48 (286)
107 2nyg_A YOKD protein; PFAM02522 26.0 43 0.0015 30.2 3.1 23 51-73 17-39 (273)
108 1vjk_A Molybdopterin convertin 25.8 1.2E+02 0.004 22.2 5.1 45 13-72 36-94 (98)
109 1eg5_A Aminotransferase; PLP-d 25.8 2E+02 0.0069 26.7 8.3 13 13-25 14-26 (384)
110 1y7l_A O-acetylserine sulfhydr 25.7 3.7E+02 0.013 24.4 9.8 89 29-120 26-117 (316)
111 3dzz_A Putative pyridoxal 5'-p 25.5 1.8E+02 0.0063 27.1 8.0 55 61-118 106-167 (391)
112 2zbc_A 83AA long hypothetical 25.5 1.1E+02 0.0039 21.0 4.9 47 456-517 15-61 (83)
113 3tqh_A Quinone oxidoreductase; 24.7 1.9E+02 0.0063 26.5 7.6 76 38-118 124-203 (321)
114 4e5s_A MCCFLIKE protein (BA_56 24.5 2.1E+02 0.007 26.6 7.7 60 60-119 8-86 (331)
115 1o58_A O-acetylserine sulfhydr 24.5 3.8E+02 0.013 24.2 9.6 63 55-120 57-120 (303)
116 1ofu_X SULA, hypothetical prot 24.5 2.4E+02 0.0081 21.5 7.0 43 52-94 46-88 (119)
117 1mdo_A ARNB aminotransferase; 24.4 1.8E+02 0.006 27.3 7.6 12 61-72 76-87 (393)
118 1wy5_A TILS, hypothetical UPF0 24.3 4E+02 0.014 24.3 9.7 71 49-119 8-92 (317)
119 3ite_A SIDN siderophore synthe 24.2 1.2E+02 0.004 30.6 6.6 83 38-120 193-281 (562)
120 3a2k_A TRNA(Ile)-lysidine synt 23.3 3E+02 0.01 26.9 9.1 70 51-120 4-87 (464)
121 2cf5_A Atccad5, CAD, cinnamyl 23.3 2E+02 0.0068 26.8 7.6 79 38-119 151-233 (357)
122 3ss7_X D-serine dehydratase; t 22.7 5.2E+02 0.018 25.0 10.5 98 29-126 101-221 (442)
123 3isl_A Purine catabolism prote 22.6 2.8E+02 0.0096 26.0 8.8 69 49-119 72-144 (416)
124 2rkb_A Serine dehydratase-like 22.5 3.9E+02 0.013 24.3 9.3 58 64-122 54-111 (318)
125 3b8x_A WBDK, pyridoxamine 5-ph 22.1 2.7E+02 0.0093 26.0 8.5 54 60-117 76-134 (390)
126 2e7j_A SEP-tRNA:Cys-tRNA synth 21.8 3.3E+02 0.011 25.0 9.0 54 62-118 91-154 (371)
127 1zsy_A Mitochondrial 2-enoyl t 21.7 3.2E+02 0.011 25.4 8.7 78 39-117 139-222 (357)
128 1yqd_A Sinapyl alcohol dehydro 21.5 2.7E+02 0.0094 26.0 8.2 60 55-117 178-238 (366)
129 3goh_A Alcohol dehydrogenase, 21.5 2.3E+02 0.0077 25.8 7.4 74 38-116 114-190 (315)
130 3jv7_A ADH-A; dehydrogenase, n 21.3 2.8E+02 0.0094 25.6 8.1 77 40-119 143-224 (345)
131 3a2b_A Serine palmitoyltransfe 21.2 4.3E+02 0.015 24.6 9.7 53 62-118 125-180 (398)
132 4h27_A L-serine dehydratase/L- 21.1 1.9E+02 0.0067 27.1 6.9 57 67-123 95-151 (364)
133 2z9v_A Aspartate aminotransfer 21.0 2.7E+02 0.0094 25.9 8.2 55 62-117 81-140 (392)
134 3ndn_A O-succinylhomoserine su 20.9 3.7E+02 0.013 25.6 9.1 60 69-128 100-162 (414)
135 3fpc_A NADP-dependent alcohol 20.8 2.1E+02 0.0072 26.6 7.2 76 38-117 138-217 (352)
136 2bkw_A Alanine-glyoxylate amin 20.5 4E+02 0.014 24.5 9.3 56 62-118 84-144 (385)
137 4ej6_A Putative zinc-binding d 20.4 2.4E+02 0.0083 26.4 7.5 59 55-117 174-233 (370)
138 3zrp_A Serine-pyruvate aminotr 20.3 3.1E+02 0.011 25.2 8.5 57 61-118 74-134 (384)
139 2rb4_A ATP-dependent RNA helic 20.0 3.4E+02 0.012 21.8 9.2 69 48-119 21-92 (175)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1.8e-80 Score=647.61 Aligned_cols=503 Identities=28% Similarity=0.385 Sum_probs=435.4
Q ss_pred CCChhhHHHHHhhcCCCCceEEEC--CccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCcE
Q 008636 13 PLTPLGFIERAATACDDCPSIIYN--DTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAI 90 (558)
Q Consensus 13 ~~tl~~~l~~~a~~~p~~~a~~~~--~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 90 (558)
.+|+.++|.++++++|+++|+++. ++++||+||.+++.++|++|+++|+++||+|+|+++|++++++++|||+++|++
T Consensus 21 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav 100 (536)
T 3ni2_A 21 NLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAI 100 (536)
T ss_dssp SCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred CCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCE
Confidence 589999999999999999999985 579999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccCChHHHHHHHhhcCccEEEEeCcChHHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCCCCCCCCchhhHH
Q 008636 91 FNTINTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPPADFVDTYE 170 (558)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (558)
++|++|.++.+++.++++.++++++|++.+....+.+..... ...++.++.... ....+.
T Consensus 101 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~---------------~~~~~~ 160 (536)
T 3ni2_A 101 ITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-----DVKVMCVDSAPD---------------GCLHFS 160 (536)
T ss_dssp EEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-----TCEEEESSCCCT---------------TCEETH
T ss_pred EeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-----CceEEEecCCCC---------------CccCHH
Confidence 999999999999999999999999999988777776654432 123333322110 023344
Q ss_pred HhhcCCCCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhccc----ccccCCCCEEEEecCchhhhhh-
Q 008636 171 NMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLI----DWVVPKQSVLLWTLPMFHNNGW- 245 (558)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~g~- 245 (558)
++........ ......++++++|+|||||||.||+|.++|+++......... .+.+.+++++++.+|++|..++
T Consensus 161 ~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~ 239 (536)
T 3ni2_A 161 ELTQADENEA-PQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALN 239 (536)
T ss_dssp HHHTSCGGGC-CCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHH
T ss_pred HHhhcccccc-ccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHH
Confidence 4443322211 223456889999999999999999999999999876654432 4567889999999999999998
Q ss_pred hHHHHHHHhcceEEEecCCCHHHHHHHHHHhCCcEEEehHHHHHHHhcCc--cccCCCCceEEEEecCCCChhhhHHhh-
Q 008636 246 SFTWGAAVVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSP--EAKQLDRPVRILTAGSPPPAPVLLRTE- 322 (558)
Q Consensus 246 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~--~~~~~~~l~~v~~~g~~l~~~~~~~~~- 322 (558)
..++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++.. ....++++|.+++||+++++++.+.++
T Consensus 240 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~ 319 (536)
T 3ni2_A 240 SIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRA 319 (536)
T ss_dssp HTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999876 455688999999999999999999998
Q ss_pred hc-CCeeeecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCCCCCeeeEEEEecc
Q 008636 323 SL-GFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGG 401 (558)
Q Consensus 323 ~~-~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~ 401 (558)
.+ ++++++.||+||++++++.+..... .......+++|.|.++. +++|+|++++.+++.| +.|||+|+|+
T Consensus 320 ~~~~~~l~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~ 390 (536)
T 3ni2_A 320 KFPQARLGQGYGMTEAGPVLAMCLAFAK------EPFDIKPGACGTVVRNA-EMKIVDPETGASLPRN--QPGEICIRGD 390 (536)
T ss_dssp HCTTSEEEEEEECGGGSSEEEECGGGSS------SCCCCCTTCCCEECSSC-EEEEECTTTCCBCCTT--CCEEEEEEST
T ss_pred HCCCCCccccccccccchhhhcccccCC------ccccCCCCCeeEeCCCc-EEEEEeCCCCcCCCCC--CccEEEEeCc
Confidence 45 8999999999999987665532111 01122346789999998 9999998889999988 8899999999
Q ss_pred cccccccCCchhhcccc-cCCceeeCceeEEccCCcEEEecccCCeeeeCceeechHHHHHHHhcCCCcceeEEEeeeCC
Q 008636 402 SLMLGYLKDPEATSKCM-KDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDP 480 (558)
Q Consensus 402 ~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 480 (558)
+++.|||++|+.+...| .+|||+|||+|++++||++++.||+||+||++|++|+|.+||+.|.++|+|.+++|++.+++
T Consensus 391 ~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~ 470 (536)
T 3ni2_A 391 QIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDE 470 (536)
T ss_dssp TSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEET
T ss_pred ccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecC
Confidence 99999999999999988 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEEecCCCCCCCCCCCHHHHHHHHHhcCCCccccCeEEEecccCCCCCCcchhHHHHHHHhh
Q 008636 481 FWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIANS 550 (558)
Q Consensus 481 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GK~~r~~l~~~~~~ 550 (558)
..|+.++++|+..++.. .+.++++++++++|+.|++|+.++++++||+|++||++|++|++++++
T Consensus 471 ~~g~~~~a~vv~~~~~~-----~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 471 DAGEVPVAFVVKSEKSQ-----ATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp TTEEEEEEEEEECTTCC-----CCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred CCCceeEEEEEecCCCC-----CCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 99999999999887655 788999999999999999999999999999999999999999998865
No 2
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=1.5e-80 Score=650.22 Aligned_cols=508 Identities=25% Similarity=0.352 Sum_probs=405.4
Q ss_pred CCCCCCCChhhHHHHHhhcCCCCceEEECC--------ccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHH
Q 008636 8 PANSCPLTPLGFIERAATACDDCPSIIYND--------TTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYE 79 (558)
Q Consensus 8 ~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~--------~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~ 79 (558)
+.+.+.+|+.++|+++++++|+++|+++.+ +++||+||.+++.++|++|+++|+++||+|+|+++|++++++
T Consensus 13 ~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~ 92 (549)
T 3g7s_A 13 SLYYPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVM 92 (549)
T ss_dssp CCCCCCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred CCCcCCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHH
Confidence 456678999999999999999999999977 899999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcEEEeccccCChHHHHHHHhhcCccEEEEeCcChHHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCCC
Q 008636 80 LHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPR 159 (558)
Q Consensus 80 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (558)
++|||+++|++++|++|.++.+++.+++++++++++|++......+........ ...++.....
T Consensus 93 ~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~------------ 156 (549)
T 3g7s_A 93 TIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG----VERVFVVGGE------------ 156 (549)
T ss_dssp HHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC----CCEEEEETCS------------
T ss_pred HHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC----CcEEEEeCCC------------
Confidence 999999999999999999999999999999999999999988877777655432 3444444321
Q ss_pred CCCCCchhhHHHhhcCCCCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhcccccccCCCCEEEEecCc
Q 008636 160 IPPADFVDTYENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPM 239 (558)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 239 (558)
...+.++...............++++++|+|||||||.||+|.++|+++..........+++.+++++++.+|+
T Consensus 157 ------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~ 230 (549)
T 3g7s_A 157 ------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPM 230 (549)
T ss_dssp ------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCT
T ss_pred ------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcH
Confidence 23444554443333222222334899999999999999999999999999888888778889999999999999
Q ss_pred hhhhhhhHHHHHHHhcceEEEecCCCHHHHHHHHHHhCCcEEEehHHHHHHHhcCcc----ccCCCCceEEEEecCCCCh
Q 008636 240 FHNNGWSFTWGAAVVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPE----AKQLDRPVRILTAGSPPPA 315 (558)
Q Consensus 240 ~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~----~~~~~~l~~v~~~g~~l~~ 315 (558)
+|..++..++.++..|+++++.+.+++..+++.++++++|++.++|+++..|++... ...++++|.+++||+++++
T Consensus 231 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~ 310 (549)
T 3g7s_A 231 FHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAP 310 (549)
T ss_dssp TSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCH
T ss_pred HHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCH
Confidence 999998778889999999999999999999999999999999999999999987652 2467899999999999999
Q ss_pred hhhHHhhh-----cC---CeeeecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccC
Q 008636 316 PVLLRTES-----LG---FIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVK 387 (558)
Q Consensus 316 ~~~~~~~~-----~~---~~v~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~ 387 (558)
++.+.+.+ ++ +++++.||+||++++++.+.. .......++|.|.+++ +++|+|++++.+++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~----------~~~~~~~~~G~p~~~~-~~~i~d~~~g~~~~ 379 (549)
T 3g7s_A 311 ALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPP----------LRLDKSTTQGVPMSDI-ELKVISLEDGRELG 379 (549)
T ss_dssp HHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCG----------GGGGGTTSCCEECTTC-EEEEECSSSCCEEC
T ss_pred HHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCc----------cccCcCCCccccCCCC-EEEEEeCCCCcCCC
Confidence 99999874 35 899999999999987765431 1123456889999998 99999977999999
Q ss_pred CCCCeeeEEEEecccccccccCCchhhcccc---cCC--ceeeCceeEEccCCcEEEecccCCeeeeCceeechHHHHHH
Q 008636 388 RDGQTRGEIVMRGGSLMLGYLKDPEATSKCM---KDG--RYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESV 462 (558)
Q Consensus 388 ~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~g--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~ 462 (558)
.| +.|||+|+|++++.|||++|+.+...| .+| ||+|||+|++|+||.+++.||+||+||++|++|+|.+||+.
T Consensus 380 ~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~ 457 (549)
T 3g7s_A 380 VG--ESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEAL 457 (549)
T ss_dssp TT--CCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHH
T ss_pred CC--CceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHH
Confidence 98 889999999999999999999999988 678 99999999999999999999999999999999999999999
Q ss_pred HhcCCCcceeEEEeeeCCCCCceeEEEEEecCCCCCCCCCCCHHHHHHHHHhcCCCccccCeEEEecccCCCCCCcchhH
Q 008636 463 LYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKY 542 (558)
Q Consensus 463 l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GK~~r~ 542 (558)
|.++|+|.+++|++.+++..|+.++++|++.++.... .+.++++++++++|+.|++|+.++++++||+|++||++|+
T Consensus 458 l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~ 534 (549)
T 3g7s_A 458 LMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGK---VDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRR 534 (549)
T ss_dssp HTTSTTEEEEEEECCCC------CEEEEEECSTTTTS---CCHHHHHHHHHTTCC-----CCCCEEEECC----------
T ss_pred HHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCc---CCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHH
Confidence 9999999999999999998899999999988763211 6889999999999999999999999999999999999999
Q ss_pred HHHHHHhhccc
Q 008636 543 VLGDIANSMSM 553 (558)
Q Consensus 543 ~l~~~~~~~~~ 553 (558)
+|++.+..-.-
T Consensus 535 ~L~~~~~~~~~ 545 (549)
T 3g7s_A 535 LLREKEAEGHH 545 (549)
T ss_dssp -----------
T ss_pred HHHHHhhcccc
Confidence 99999876543
No 3
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1.6e-80 Score=648.28 Aligned_cols=518 Identities=31% Similarity=0.479 Sum_probs=403.6
Q ss_pred CCCCCCCCChhhHHHHHhhcCCCCceEEE----CCccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 008636 7 NPANSCPLTPLGFIERAATACDDCPSIIY----NDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHF 82 (558)
Q Consensus 7 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~~----~~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 82 (558)
.++.+.++|+.++|+++++++|+++|+.+ .++++||+||.+++.++|++|+++|+++||+|+|+++|++++++++|
T Consensus 11 ~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 90 (541)
T 1v25_A 11 STMMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYF 90 (541)
T ss_dssp CCBCCCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 33445678999999999999999999994 45789999999999999999999999999999999999999999999
Q ss_pred HHhhcCcEEEeccccCChHHHHHHHhhcCccEEEEeCcChHHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCCCCCC
Q 008636 83 AVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPP 162 (558)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (558)
||+++|++++|++|.++.+++.+++++++++++|++.+....+.......+ ....++.++... ..
T Consensus 91 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--------~~---- 155 (541)
T 1v25_A 91 AVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELK---TVQHFVVMDEKA--------PE---- 155 (541)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCS---SCCEEEESSSCC--------CT----
T ss_pred HHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCC---CccEEEEecCCC--------Cc----
Confidence 999999999999999999999999999999999999887776666544332 123344433211 00
Q ss_pred CCchhhHHHhhcCCCCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHh--cccccccCCCCEEEEecCch
Q 008636 163 ADFVDTYENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVD--SLIDWVVPKQSVLLWTLPMF 240 (558)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~ 240 (558)
....+.++....... ....++++++|+|||||||.||+|.++|+++...... ....+.++++|++++.+|++
T Consensus 156 --~~~~~~~~~~~~~~~----~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 229 (541)
T 1v25_A 156 --GYLAYEEALGEEADP----VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMF 229 (541)
T ss_dssp --TCEEHHHHCCSCCCC----CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTT
T ss_pred --ccccHHHHhhccCCc----ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccch
Confidence 123455554433221 2356789999999999999999999999999766654 23456788999999999999
Q ss_pred hhhhhhHHHHHHHhcceEEEecC-CCHHHHHHHHHHhCCcEEEehHHHHHHHhcCc--cccCCCCceEEEEecCCCChhh
Q 008636 241 HNNGWSFTWGAAVVGATNVCLRK-FDAPTVFALIRKHGVTHMCGAPIVLNLLSSSP--EAKQLDRPVRILTAGSPPPAPV 317 (558)
Q Consensus 241 ~~~g~~~~~~~l~~g~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~--~~~~~~~l~~v~~~g~~l~~~~ 317 (558)
|..++..++.+++.|+++++.+. +++..+++.++++++|++.++|+++..|++.. ....++++|.+++||+++++++
T Consensus 230 h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~ 309 (541)
T 1v25_A 230 HVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSL 309 (541)
T ss_dssp SHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHH
T ss_pred hhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHH
Confidence 99999878889999999999874 69999999999999999999999999998765 2346789999999999999999
Q ss_pred hHHhhhcCCeeeecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCCCCCeeeEEE
Q 008636 318 LLRTESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIV 397 (558)
Q Consensus 318 ~~~~~~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~ 397 (558)
.++++.+++++++.||+||++++++.+.....+...+.........++|.|.+++ +++|+|+ ++++++.++++.|||+
T Consensus 310 ~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~-~g~~~~~~~~~~GEl~ 387 (541)
T 1v25_A 310 IARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV-RLRVADE-EGRPVPKDGKALGEVQ 387 (541)
T ss_dssp HHHHHHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTC-EEEEECT-TSCBCCSSSCCCEEEE
T ss_pred HHHHHHhCCceeecccccccccceecccccccccccCccccccccCCCCCcCCCc-EEEEECC-CCCCCCCCCCcceEEE
Confidence 9999767999999999999998777654333222222222234567899999998 9999997 6788886544689999
Q ss_pred EecccccccccCCchhhccccc-CCceeeCceeEEccCCcEEEecccCCeeeeCceeechHHHHHHHhcCCCcceeEEEe
Q 008636 398 MRGGSLMLGYLKDPEATSKCMK-DGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVG 476 (558)
Q Consensus 398 v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 476 (558)
|+|++++.|||++|+.+...|. +|||+|||+|++|+||++++.||+||+||++|++|+|.+||+.|.++|+|.+++|++
T Consensus 388 v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~ 467 (541)
T 1v25_A 388 LKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVA 467 (541)
T ss_dssp EESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEE
T ss_pred EeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEE
Confidence 9999999999999999999996 899999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCceeEEEEEecCCCCCCCCCCCHHHHHHHHHh-cCCCccccCeEEEecccCCCCCCcchhHHHHHHHhhccc
Q 008636 477 RPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRA-RIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIANSMSM 553 (558)
Q Consensus 477 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~v~~~P~t~~GK~~r~~l~~~~~~~~~ 553 (558)
.+++..++.++++|++. +.. .+.+++++++++ +|+.|++|+.++++++||+|++||++|++|++.+.+...
T Consensus 468 ~~~~~~~~~~~a~vv~~-~~~-----~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 539 (541)
T 1v25_A 468 IPHPKWQERPLAVVVPR-GEK-----PTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYYG 539 (541)
T ss_dssp EECSSSSEEEEECC-------------------------CCCTTTSCSBC--------------CCTTHHHHSTTSSC
T ss_pred ecCCCcCceEEEEEEEC-CCC-----CCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHhhC
Confidence 99998899999998876 322 466789999998 899999999999999999999999999999999877643
No 4
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.5e-79 Score=637.48 Aligned_cols=502 Identities=29% Similarity=0.419 Sum_probs=433.6
Q ss_pred CCCCCCCChhhHHHHHhhcCCCCceEEECCc--cccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHh
Q 008636 8 PANSCPLTPLGFIERAATACDDCPSIIYNDT--TYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVP 85 (558)
Q Consensus 8 ~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~--~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 85 (558)
......+|+.++|+++++++|+++|+++.++ ++||+||.+++.++|++|+++|+++||+|+|+++|++++++++|||+
T Consensus 10 ~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 89 (517)
T 3r44_A 10 DDDDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAA 89 (517)
T ss_dssp --CGGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CCcccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHH
Confidence 3456678999999999999999999999876 99999999999999999999999999999999999999999999999
Q ss_pred hcCcEEEeccccCChHHHHHHHhhcCccEEEEeCcChHHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCCCCCCCCc
Q 008636 86 MSGAIFNTINTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPPADF 165 (558)
Q Consensus 86 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (558)
++|++++|++|.++.+++..++++++++++|++......+.......... ..++....
T Consensus 90 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~---~~~~~~~~------------------- 147 (517)
T 3r44_A 90 KLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPP---GTVTDWIG------------------- 147 (517)
T ss_dssp HHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCC---TTCCEEEE-------------------
T ss_pred HhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCc---cEEEEccC-------------------
Confidence 99999999999999999999999999999999988877776665543321 11111111
Q ss_pred hhhHHHhhcCCCCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhcccccccCCCCEEEEecCchhhhhh
Q 008636 166 VDTYENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGW 245 (558)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~ 245 (558)
...+.+......... ......++++++|+|||||||.||+|.++|+++..........+++..+|++++.+|++|..++
T Consensus 148 ~~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~ 226 (517)
T 3r44_A 148 ADSLAERLRSAAADE-PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAAL 226 (517)
T ss_dssp HHHHHHHHHHCCCCC-CCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHH
T ss_pred cccHHHHhhccCcCC-CCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHH
Confidence 123333333222211 1233568899999999999999999999999999888888788889999999999999999999
Q ss_pred hHHHHHHHhcceEEEecCCCHHHHHHHHHHhCCcEEEehHHHHHHHhcCc--cccCCCCceEEEEecCCCChhhhHHhhh
Q 008636 246 SFTWGAAVVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSP--EAKQLDRPVRILTAGSPPPAPVLLRTES 323 (558)
Q Consensus 246 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~--~~~~~~~l~~v~~~g~~l~~~~~~~~~~ 323 (558)
...+.+++.|+++++.+.+++..+++.++++++|++.++|+++..|.+.. ....++++|.+++||+++++++.+.+..
T Consensus 227 ~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~ 306 (517)
T 3r44_A 227 TTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAA 306 (517)
T ss_dssp HHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHH
T ss_pred HHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHh
Confidence 77666666999999999999999999999999999999999999998876 3456789999999999999999999997
Q ss_pred cCCeeeecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCCCCCeeeEEEEecccc
Q 008636 324 LGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSL 403 (558)
Q Consensus 324 ~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~ 403 (558)
.++++++.||+||+++.++.... .......+++|.|.++. +++|+|+ ++..++.+ .|||+|+|+++
T Consensus 307 ~~~~~~~~YG~TE~~~~~~~~~~---------~~~~~~~~~~G~~~~~~-~~~i~d~-~~~~~~~g---~GEl~v~g~~v 372 (517)
T 3r44_A 307 KNIEVVQGYALTESCGGGTLLLS---------EDALRKAGSAGRATMFT-DVAVRGD-DGVIREHG---EGEVVIKSDIL 372 (517)
T ss_dssp TTCEEEEEEECGGGTTCEEEECG---------GGTTTTTTCCBEECTTE-EEEEECT-TSCEESSE---EEEEEEEETTS
T ss_pred cCCcEEEeecccccccceeecCC---------ccccccCCCCCcCCCCe-EEEEECC-CCCCCCCC---CeEEEEeCcch
Confidence 79999999999999887665431 11223456889999998 9999997 67777665 59999999999
Q ss_pred cccccCCchhhcccccCCceeeCceeEEccCCcEEEecccCCeeeeCceeechHHHHHHHhcCCCcceeEEEeeeCCCCC
Q 008636 404 MLGYLKDPEATSKCMKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQ 483 (558)
Q Consensus 404 ~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~ 483 (558)
+.|||++|+.+...|.+|||+|||+|++++||++++.||+||+||++|++|+|.+||+.|.++|+|.+++|++.+++..|
T Consensus 373 ~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g 452 (517)
T 3r44_A 373 LKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWG 452 (517)
T ss_dssp CSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTE
T ss_pred hhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred ceeEEEEEecCCCCCCCCCCCHHHHHHHHHhcCCCccccCeEEEecccCCCCCCcchhHHHHHHHhhcc
Q 008636 484 EIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIANSMS 552 (558)
Q Consensus 484 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GK~~r~~l~~~~~~~~ 552 (558)
+.+++++ +.++.. .+.++++++++++|+.|++|+.++++++||+|++||++|++|++.+.+..
T Consensus 453 ~~~~a~v-~~~~~~-----~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 515 (517)
T 3r44_A 453 EIAAAIV-VADQNE-----VSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATV 515 (517)
T ss_dssp EEEEEEE-EECTTT-----CCHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGC
T ss_pred ceEEEEE-ECCCCC-----CCHHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhc
Confidence 8888888 544443 68899999999999999999999999999999999999999999998754
No 5
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=6.4e-79 Score=635.91 Aligned_cols=503 Identities=23% Similarity=0.306 Sum_probs=428.9
Q ss_pred CCCChhhHHHHHhhcCCCCceEEECCccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCcEE
Q 008636 12 CPLTPLGFIERAATACDDCPSIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIF 91 (558)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 91 (558)
.+.|+.++|+++++++|+++|+++.++++||+||.+++.++|++|+++|+++||+|+|+++|++++++++|||+++|+++
T Consensus 23 ~~~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~ 102 (539)
T 1mdb_A 23 AGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALP 102 (539)
T ss_dssp CSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred cCCCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEE
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccCChHHHHHHHhhcCccEEEEeCcCh-----HHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCCCCCCCCch
Q 008636 92 NTINTRLDARTISIILKHSESKLVFVDHLSS-----SLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPPADFV 166 (558)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (558)
+|++|.++.+++.++++.++++++|++++.. ..........+ ....++......
T Consensus 103 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~------------------ 161 (539)
T 1mdb_A 103 VFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLP---TLKNIIVAGEAE------------------ 161 (539)
T ss_dssp EECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCT---TCCCEEEESCCT------------------
T ss_pred ecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCC---CccEEEEcCCcc------------------
Confidence 9999999999999999999999999987532 12222222222 123333332211
Q ss_pred hhHHHhhcCCCCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhcccccccCCCCEEEEecCchhhhhhh
Q 008636 167 DTYENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWS 246 (558)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~ 246 (558)
.+.++...... ........++++++|+|||||||.||+|.++|+++..........+++.+++++++.+|++|..++.
T Consensus 162 -~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~ 239 (539)
T 1mdb_A 162 -EFLPLEDLHTE-PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLS 239 (539)
T ss_dssp -TSEEGGGCCCC-CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHH
T ss_pred -chhhhhhcccc-ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhh
Confidence 01111111111 1111235678999999999999999999999999988887777777889999999999999999985
Q ss_pred --HHHHHHHhcceEEEecCCCHHHHHHHHHHhCCcEEEehHHHHHHHhcCc--cccCCCCceEEEEecCCCChhhhHHhh
Q 008636 247 --FTWGAAVVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSP--EAKQLDRPVRILTAGSPPPAPVLLRTE 322 (558)
Q Consensus 247 --~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~--~~~~~~~l~~v~~~g~~l~~~~~~~~~ 322 (558)
.++.+++.|+++++.+.+++..+++.++++++|++.++|+++..+++.. ....++++|.+++||+++++++.+++.
T Consensus 240 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~ 319 (539)
T 1mdb_A 240 SPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVK 319 (539)
T ss_dssp SSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHH
T ss_pred HHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHH
Confidence 5889999999999999899999999999999999999999999998765 345678999999999999999999998
Q ss_pred -hcCCeeeecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCCCCCeeeEEEEecc
Q 008636 323 -SLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGG 401 (558)
Q Consensus 323 -~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~ 401 (558)
.+++++++.||+||++.. ..... ........++|.|.++..+++|+|+ ++.+++.| +.|||+|+|+
T Consensus 320 ~~~~~~~~~~YG~TE~~~~-~~~~~---------~~~~~~~~~~G~p~~~~~~~~i~d~-~~~~~~~g--~~GEl~v~g~ 386 (539)
T 1mdb_A 320 AVFGCTLQQVFGMAEGLVN-YTRLD---------DPEEIIVNTQGKPMSPYDESRVWDD-HDRDVKPG--ETGHLLTRGP 386 (539)
T ss_dssp HHTCSEEEEEEECTTSCEE-ECCTT---------SCHHHHHHCCCEESSTTCEEEEECT-TSCBCCTT--CCEEEEEECT
T ss_pred HHhCCcEEEEEcCCCCccc-ccCCC---------CcHHhcCCCCCcccCCCceEEEECC-CCCCCcCC--CcceEEeeCc
Confidence 469999999999996432 22110 0112234689999987658999997 78889888 8899999999
Q ss_pred cccccccCCchhhcccc-cCCceeeCceeEEccCCcEEEecccCCeeeeCceeechHHHHHHHhcCCCcceeEEEeeeCC
Q 008636 402 SLMLGYLKDPEATSKCM-KDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDP 480 (558)
Q Consensus 402 ~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 480 (558)
+++.|||++|+.+...| .+|||+|||+|++++||++++.||+||+||++|++|+|.+||+.|.++|+|.+++|++.+++
T Consensus 387 ~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~ 466 (539)
T 1mdb_A 387 YTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQ 466 (539)
T ss_dssp TSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEET
T ss_pred ccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEecccc
Confidence 99999999999999988 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEEecCCCCCCCCCCCHHHHHHHHHhc-CCCccccCeEEEecccCCCCCCcchhHHHHHHHhhcccccC
Q 008636 481 FWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRAR-IPRYMVPKTVVFIDELPKTATGKVQKYVLGDIANSMSMSHS 556 (558)
Q Consensus 481 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~~v~~~P~t~~GK~~r~~l~~~~~~~~~~~~ 556 (558)
..|+.++++|++... . .+.++++++++++ |+.|++|+.++++++||+|++||++|++|++++.+....-|
T Consensus 467 ~~g~~~~a~vv~~~~-~-----~~~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~~~y 537 (539)
T 1mdb_A 467 FLGERSCVFIIPRDE-A-----PKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLAGF 537 (539)
T ss_dssp TTEEEEEEEEEESSS-C-----CCHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHHHTC-
T ss_pred ccCceEEEEEEECCC-C-----CCHHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHHhccc
Confidence 889999999988732 2 6789999999997 99999999999999999999999999999999988765544
No 6
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=5.9e-79 Score=630.74 Aligned_cols=492 Identities=24% Similarity=0.350 Sum_probs=424.3
Q ss_pred hhHHHHHhhcCCCCceEEE---CCccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCcEEEe
Q 008636 17 LGFIERAATACDDCPSIIY---NDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNT 93 (558)
Q Consensus 17 ~~~l~~~a~~~p~~~a~~~---~~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~ 93 (558)
.++|+++++++|+++|+.. .++++||+||.+++.++|++|+++|+++||+|+|+++|++++++++|||+++|++++|
T Consensus 3 ~~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vp 82 (503)
T 4fuq_A 3 ANLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLP 82 (503)
T ss_dssp CCHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEE
T ss_pred hhHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEe
Confidence 4678999999999999884 6689999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChHHHHHHHhhcCccEEEEeCcChHHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCCCCCCCCchhhHHHhh
Q 008636 94 INTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPPADFVDTYENML 173 (558)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (558)
++|.++.+++.+++++++++++|++.+....+........ ..+..+.... ...+.+..
T Consensus 83 l~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-----------------~~~~~~~~ 140 (503)
T 4fuq_A 83 LNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVG-----ATVETLGPDG-----------------RGSLTDAA 140 (503)
T ss_dssp CCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHT-----CEEEECCTTS-----------------CSHHHHHH
T ss_pred cCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcC-----ceEEEecCCc-----------------ccccchhh
Confidence 9999999999999999999999999876555444433221 1222222111 01112221
Q ss_pred cCCCCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhcccccccCCCCEEEEecCchhhhhh-hHHHHHH
Q 008636 174 AKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGW-SFTWGAA 252 (558)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l 252 (558)
...... .......++++++|+|||||||.||+|.++|+++..........+++.+++++++.+|++|..|+ ...+.++
T Consensus 141 ~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l 219 (503)
T 4fuq_A 141 AGASEA-FATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTL 219 (503)
T ss_dssp HTSCSC-CCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHH
T ss_pred hcCCCC-cCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHH
Confidence 111111 11224567899999999999999999999999999888888888899999999999999999997 4577889
Q ss_pred HhcceEEEecCCCHHHHHHHHHHhCCcEEEehHHHHHHHhcCc--cccCCCCceEEEEecCCCChhhhHHhh-hcCCeee
Q 008636 253 VVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSP--EAKQLDRPVRILTAGSPPPAPVLLRTE-SLGFIVS 329 (558)
Q Consensus 253 ~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~--~~~~~~~l~~v~~~g~~l~~~~~~~~~-~~~~~v~ 329 (558)
+.|+++++.+.+++..+++.++ ++|+++++|+++..+++.. ....++++|.+++||+++++++.+.+. .++++++
T Consensus 220 ~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~ 297 (503)
T 4fuq_A 220 FARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVL 297 (503)
T ss_dssp HTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEE
T ss_pred HhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhCCCcc
Confidence 9999999999999999999998 8999999999999998876 345577999999999999999999998 4599999
Q ss_pred ecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCCCCCeeeEEEEecccccccccC
Q 008636 330 HGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLK 409 (558)
Q Consensus 330 ~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~ 409 (558)
+.||+||++..+..... .....+++|.|.+++ +++|+|++++++++.| +.|||+|+|++++.|||+
T Consensus 298 ~~YG~TE~~~~~~~~~~-----------~~~~~~~~G~p~~~~-~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~GY~~ 363 (503)
T 4fuq_A 298 ERYGMTETNMNTSNPYD-----------GDRVPGAVGPALPGV-SARVTDPETGKELPRG--DIGMIEVKGPNVFKGYWR 363 (503)
T ss_dssp ECCEETTTEECBCCCSS-----------SCCCTTEEEEBCTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCCCBTT
T ss_pred ceEcccccCcccccCCC-----------CCCcCCccccCCCCe-EEEEEECCCCCCCcCC--CceEEEEECCchhhhhcC
Confidence 99999999876543221 112345789999998 9999998799999998 889999999999999999
Q ss_pred Cchhhccccc-CCceeeCceeEEccCCcEEEecccCCeeeeCceeechHHHHHHHhcCCCcceeEEEeeeCCCCCceeEE
Q 008636 410 DPEATSKCMK-DGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCA 488 (558)
Q Consensus 410 ~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~ 488 (558)
+|+.+...|. +|||+|||+|++++||.+++.||+||+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.+++
T Consensus 364 ~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a 443 (503)
T 4fuq_A 364 MPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTA 443 (503)
T ss_dssp CHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEE
T ss_pred ChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEE
Confidence 9999999995 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHHHhcCCCccccCeEEEecccCCCCCCcchhHHHHHHHhhcc
Q 008636 489 FVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIANSMS 552 (558)
Q Consensus 489 ~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GK~~r~~l~~~~~~~~ 552 (558)
+|+..++.. .+.++++++++++|+.|++|+.|+++++||+|++||++|++|++++++..
T Consensus 444 ~v~~~~~~~-----~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 502 (503)
T 4fuq_A 444 VVVRDKGAT-----IDEAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDIY 502 (503)
T ss_dssp EEEECTTCC-----CCHHHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTTT
T ss_pred EEEeCCCCC-----CCHHHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHhh
Confidence 999887765 78899999999999999999999999999999999999999999998753
No 7
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1.9e-78 Score=627.85 Aligned_cols=481 Identities=26% Similarity=0.378 Sum_probs=411.8
Q ss_pred CChhhHHHHHhhcCCCCceEEEC--CccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCcEE
Q 008636 14 LTPLGFIERAATACDDCPSIIYN--DTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIF 91 (558)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~a~~~~--~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 91 (558)
+|+.++|+++++++|+++|+.+. ++++||+||.+++.++|++|+++|+++||+|+|+++|++++++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 58999999999999999999998 7899999999999999999999999999999999999999999999999999999
Q ss_pred EeccccCChHHHHHHHhhcCccEEEE--eCcChHHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCCCCCCCCchhhH
Q 008636 92 NTINTRLDARTISIILKHSESKLVFV--DHLSSSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPPADFVDTY 169 (558)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (558)
+|++|.++.+++.+++++++++++|+ +.+....+... .. ...++.+.
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~---~~----~~~~~~~~------------------------ 130 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQS---GS----GARIIFLG------------------------ 130 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHH---CC----CCEEEEGG------------------------
T ss_pred EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhc---cc----cceeEEec------------------------
Confidence 99999999999999999999999999 66544333111 11 11122111
Q ss_pred HHhhcCC-----CCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhccccccc--CCCCEEEEecCchhh
Q 008636 170 ENMLAKG-----DPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVV--PKQSVLLWTLPMFHN 242 (558)
Q Consensus 170 ~~~~~~~-----~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~ 242 (558)
++.... .... ......++++++|+|||||||.||+|.++|+++..........+++ .+.+++++.+|++|.
T Consensus 131 -~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 208 (504)
T 1t5h_X 131 -DLVRDGEPYSYGPPI-EDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHV 208 (504)
T ss_dssp -GTEETTEECCCSCCC-CCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSH
T ss_pred -chhhcCcccccCCcc-CCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhc
Confidence 111110 0000 1123467899999999999999999999999998877766666677 789999999999999
Q ss_pred hhh-hHHHHHHHhcceEEEecCCCHHHHHHHHHHhCCcEEEehHHHHHHHhcCc----cccCCCCceEEEEecCCCChhh
Q 008636 243 NGW-SFTWGAAVVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSP----EAKQLDRPVRILTAGSPPPAPV 317 (558)
Q Consensus 243 ~g~-~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~----~~~~~~~l~~v~~~g~~l~~~~ 317 (558)
.++ ..++.++..|+++++.+.+++..+++.++++++|+++++|+++..|.+.. ....++++|.+++||+++++++
T Consensus 209 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~ 288 (504)
T 1t5h_X 209 VGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAV 288 (504)
T ss_dssp HHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHH
T ss_pred chHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHH
Confidence 998 56889999999999999999999999999999999999999999998754 2345789999999999999999
Q ss_pred hHHhhh-cCCeeeecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCC--cccCCCCCeee
Q 008636 318 LLRTES-LGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETG--LSVKRDGQTRG 394 (558)
Q Consensus 318 ~~~~~~-~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~--~~~~~~~~~~G 394 (558)
.+.+.+ ++..+++.||+||++. +.... ....+++|.|.++. +++|+|++++ ++++.| +.|
T Consensus 289 ~~~~~~~~~~~~~~~YG~TE~~~-~~~~~-------------~~~~~~~g~p~~~~-~~~i~~~~~~~~~~~~~g--~~G 351 (504)
T 1t5h_X 289 LETVHQHLPGEKVNIYGTTEAMN-SLYMR-------------QPKTGTEMAPGFFS-EVRIVRIGGGVDEIVANG--EEG 351 (504)
T ss_dssp HHHHHHHCCSEEEEEEEETTTEE-EEEEE-------------SCSSSSEEBCCTTC-CEEEECTTSCTTCBCCTT--CCE
T ss_pred HHHHHHhcCcceeeeeccccccc-ccccc-------------CCCCCccccCCCCC-ceeEEeccCCCCCcCCCC--Ccc
Confidence 999984 5899999999999832 22111 11235678888888 9999997432 778777 789
Q ss_pred EEEEe-cccccccccCCchhhcccccCCceeeCceeEEccCCcEEEecccCCeeeeCceeechHHHHHHHhcCCCcceeE
Q 008636 395 EIVMR-GGSLMLGYLKDPEATSKCMKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAA 473 (558)
Q Consensus 395 el~v~-~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~ 473 (558)
||+++ |+.++.||+++|+.+.+.|.+|||+|||+|++++||.+++.||+||+||++|++|+|.+||+.|.++|+|.+++
T Consensus 352 El~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~ 431 (504)
T 1t5h_X 352 ELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVV 431 (504)
T ss_dssp EEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEE
T ss_pred eEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEE
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeCCCCCceeEEEEEecCCCCCCCCCCCHHHHHHHHHh-cCCCccccCeEEEecccCCCCCCcchhHHHHHHHh
Q 008636 474 VVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRA-RIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIAN 549 (558)
Q Consensus 474 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~v~~~P~t~~GK~~r~~l~~~~~ 549 (558)
|++.+++..|+.++++|++.++.. .+.+++++++++ +|+.|++|+.++++++||+|++||++|++|+++++
T Consensus 432 Vv~~~~~~~g~~~~a~vv~~~~~~-----~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 432 VIGLADQRWGQSVTACVVPRLGET-----LSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp EEEEECSSSSEEEEEEEEECTTCC-----CCHHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred EEEeecCCCCcEEEEEEEecCCcC-----cCHHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 999999999999999999887654 678999999998 89999999999999999999999999999999875
No 8
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=9.9e-80 Score=638.70 Aligned_cols=502 Identities=25% Similarity=0.371 Sum_probs=334.6
Q ss_pred CCCCCChhhHHHHHhhcCCCCceEEECCccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCc
Q 008636 10 NSCPLTPLGFIERAATACDDCPSIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGA 89 (558)
Q Consensus 10 ~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 89 (558)
...++|+.++|+++++++|+++|+++.++++||+||.+++.++|++|+++|+++||+|+|+++|++++++++|||+++|+
T Consensus 2 s~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga 81 (509)
T 3ivr_A 2 SLHDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGA 81 (509)
T ss_dssp CTTCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred CCCcCCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccCChHHHHHHHhhcCccEEEEeCcChHHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCCCCCCCCchhhH
Q 008636 90 IFNTINTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPPADFVDTY 169 (558)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (558)
+++|++|.++.+++.++++.++++++|++.+....+........ ....++.+..... .+
T Consensus 82 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~------------------~~ 140 (509)
T 3ivr_A 82 ILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLG---GVKKAYAIGDGSG------------------PF 140 (509)
T ss_dssp EEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCS---SCCEEEESSCCCS------------------SC
T ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccC---CceEEEEcCCCCc------------------Ch
Confidence 99999999999999999999999999999988777555544332 2334444432110 11
Q ss_pred HHhhcCCCCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhcccccccCCCCEEEEecCchhhhhhhHHH
Q 008636 170 ENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTW 249 (558)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~ 249 (558)
.++...............++++++|+|||||||.||+|.++|+++..........+++.++|++++.+|++|..++...+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~ 220 (509)
T 3ivr_A 141 APFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLML 220 (509)
T ss_dssp EEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHH
T ss_pred hhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHH
Confidence 11111011111112345688999999999999999999999999998888888888999999999999999999998877
Q ss_pred HHHHhcceEEEecCCCHHHHHHHHHHhCCcEEEehHHHHHHHhcCccccCCCCceEEEEecCCCChhhhHHhh-hc-CCe
Q 008636 250 GAAVVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQLDRPVRILTAGSPPPAPVLLRTE-SL-GFI 327 (558)
Q Consensus 250 ~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~l~~v~~~g~~l~~~~~~~~~-~~-~~~ 327 (558)
.+++.|++.++...+++..+++.++++++|++.++|+++..|++......+++++.++.+|++ +..+.+. .+ +++
T Consensus 221 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~ 297 (509)
T 3ivr_A 221 TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGLDTP---ETIERFEATCPNAT 297 (509)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCCGGGGTTCCEEEEECCH---HHHHHHHHHCTTCE
T ss_pred HHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcccccchhhhheecccCCh---HHHHHHHHhcCCCe
Confidence 777777777777788999999999999999999999999999888777778899999999987 6666666 44 899
Q ss_pred eeecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCCCCCeeeEEEEecccccccc
Q 008636 328 VSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGY 407 (558)
Q Consensus 328 v~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy 407 (558)
+++.||+||++++++.+... .....+|.|.+++ +++|+|+ ++.+++.| +.|||+|+|++++.||
T Consensus 298 ~~~~YG~TE~~~~~~~~~~~------------~~~~~~G~p~~~~-~~~i~d~-~~~~~~~g--~~GEl~v~g~~~~~gY 361 (509)
T 3ivr_A 298 FWATFGQSETSGLSTFAPYR------------DRPKSAGRPLFWR-TVAVVDA-EDRPLPPG--EVGEIVLRGPTVFKGY 361 (509)
T ss_dssp EEEEEEEGGGTEEEEEEEGG------------GSTTSCCEECTTC-EEEEECT-TSCBCCTT--CCEEEEEESTTSCCEE
T ss_pred EEcccCccccccccccCccc------------cCCCcccccCCCc-EEEEECC-CCCCCCCC--CceEEEEecCCccccc
Confidence 99999999999876654311 1123489999998 9999998 68899888 8899999999999999
Q ss_pred cCCchhhcccccCCceeeCceeEEccCCcEEEeccc--CCeeeeCceeechHHHHHHHhcCCCcceeEEEeeeCCCCCce
Q 008636 408 LKDPEATSKCMKDGRYYTGDVGMMHPDGYLEIKDRS--KDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEI 485 (558)
Q Consensus 408 ~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~--~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~ 485 (558)
|++|+.+...|.+|||+|||+|++++||++++.||+ +|+||++|++|+|.+||+.|.++|+|.+++|++.+++..++.
T Consensus 362 ~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~ 441 (509)
T 3ivr_A 362 WNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEA 441 (509)
T ss_dssp TTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC--------------------------------------------
T ss_pred cCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcE
Confidence 999999999999999999999999999999999999 999999999999999999999999999999999999988999
Q ss_pred eEEEEEecCCCCCCCCCCCHHHHHHHHHhcCCCccccCeEEEecccCCCCCCcchhHHHHHHHhhcccccC
Q 008636 486 PCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIANSMSMSHS 556 (558)
Q Consensus 486 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GK~~r~~l~~~~~~~~~~~~ 556 (558)
+++++++.++.. .+.++++++++++|+.|++|+.++++++||+|++||++|++|++++.+...++.
T Consensus 442 ~~a~v~~~~~~~-----~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~~~~ 507 (509)
T 3ivr_A 442 IKAVCVCKPGES-----IAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGHHHH 507 (509)
T ss_dssp -----------------------------------------------------------------------
T ss_pred EEEEEEeCCCCC-----CCHHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhcccccC
Confidence 999999877654 677889999999999999999999999999999999999999999998776653
No 9
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=2.2e-79 Score=640.12 Aligned_cols=504 Identities=21% Similarity=0.269 Sum_probs=337.0
Q ss_pred CCCCChhhHHHHHhhcCCCCceEEECCccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCcE
Q 008636 11 SCPLTPLGFIERAATACDDCPSIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAI 90 (558)
Q Consensus 11 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 90 (558)
+.++|+.++|+++++++|+++|+++.++++||+||.+++.++|++|+++|+++||+|+|+++|++++++++|||+++|++
T Consensus 27 ~~~~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav 106 (544)
T 3o83_A 27 WIDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVV 106 (544)
T ss_dssp CCCCCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred CCCCCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccCChHHHHHHHhhcCccEEEEeCcCh-----HHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCCCCCCCCc
Q 008636 91 FNTINTRLDARTISIILKHSESKLVFVDHLSS-----SLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPPADF 165 (558)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (558)
++|+++.++.+++.++++.++++++|++.... ........... ....++.......
T Consensus 107 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---------------- 167 (544)
T 3o83_A 107 VLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNL---SPEIILMLNHQAT---------------- 167 (544)
T ss_dssp EEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTC---CCSEEEEETCCTT----------------
T ss_pred EecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhccc---CcceEEEecCCcc----------------
Confidence 99999999999999999999999999987653 22333322222 1233333332210
Q ss_pred hhhHHHhhcCCCCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhcccccccCCCCEEEEecCchhhhhh
Q 008636 166 VDTYENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGW 245 (558)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~ 245 (558)
...+.++...............++++++|+|||||||.||+|.++|+++..........+++.++|++++.+|++|..++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 247 (544)
T 3o83_A 168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFML 247 (544)
T ss_dssp SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHH
T ss_pred ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeec
Confidence 02233333333222222234668899999999999999999999999999888888888899999999999999999887
Q ss_pred h--HHHHHHHhcceEEEecCCCHHHHHHHHHHhCCcEEEehHHHHHHHhcCc--cccCCCCceEEEEecCCCChhhhHHh
Q 008636 246 S--FTWGAAVVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSP--EAKQLDRPVRILTAGSPPPAPVLLRT 321 (558)
Q Consensus 246 ~--~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~--~~~~~~~l~~v~~~g~~l~~~~~~~~ 321 (558)
. .++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++.. ....++++|.+++||+++++++.+.+
T Consensus 248 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~ 327 (544)
T 3o83_A 248 SSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQV 327 (544)
T ss_dssp HSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHH
T ss_pred chHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHH
Confidence 5 5888999999999999999999999999999999999999999998765 34557899999999999999999999
Q ss_pred hh-cCCeeeecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCcee-cccceeeEeCCCCCcccCCCCCeeeEEEEe
Q 008636 322 ES-LGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRT-IGLTEVDIVDPETGLSVKRDGQTRGEIVMR 399 (558)
Q Consensus 322 ~~-~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~ 399 (558)
.+ +++++++.||+||++..+.... ........++|.|. ++. +++|+|+ ++.+++.| +.|||+|+
T Consensus 328 ~~~~~~~~~~~YG~TE~~~~~~~~~----------~~~~~~~~~~G~p~~~~~-~~~i~d~-~~~~~~~g--~~GEl~v~ 393 (544)
T 3o83_A 328 PEVLNCKLQQVFGMAEGLVNYTRLD----------DSDEQIFTTQGRPISSDD-EIKIVDE-QYREVPEG--EIGMLATR 393 (544)
T ss_dssp HHHHCSEEEEEEECTTSCEEECCTT----------SCHHHHHHCCCEESCTTC-EEEEECT-TSCBCCTT--CCEEEEEE
T ss_pred HHHhCCcEEeeeccccccceeecCC----------CchhhccCCCceecCCCc-EEEEECC-CCCCCCCC--CeeEEEEe
Confidence 84 5999999999999875443321 11223456889996 555 9999996 78899988 88999999
Q ss_pred cccccccccCCchhhcccc-cCCceeeCceeEEccCCcEEEecccCCeeeeCceeechHHHHHHHhcCCCcceeEEEeee
Q 008636 400 GGSLMLGYLKDPEATSKCM-KDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRP 478 (558)
Q Consensus 400 ~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 478 (558)
|++++.|||++|+.+...| .+|||+|||+|++++||.+++.||+||+||++|++|+|.+||+.|.++|+|.+++|++.+
T Consensus 394 g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~ 473 (544)
T 3o83_A 394 GPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIV 473 (544)
T ss_dssp CTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC----------------------------------
T ss_pred cCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEecc
Confidence 9999999999999999999 689999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEecCCCCCCCCCCCHHHHHHHHHh-cCCCccccCeEEEecccCCCCCCcchhHHHHHHHhhccc
Q 008636 479 DPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRA-RIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIANSMSM 553 (558)
Q Consensus 479 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~v~~~P~t~~GK~~r~~l~~~~~~~~~ 553 (558)
++..|+.++++++..+.. ....++++++++ .|+.|++|+.++++++||+|++||++|++|++++++.+.
T Consensus 474 ~~~~g~~~~a~vv~~~~~------~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 543 (544)
T 3o83_A 474 DEQFGEKSCAFIVSRNPE------LKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTSTT 543 (544)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CCCCCceEEEEEEeCCCC------CCHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhccC
Confidence 999999999999876632 566788899988 799999999999999999999999999999999987553
No 10
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=4.3e-78 Score=633.34 Aligned_cols=505 Identities=21% Similarity=0.285 Sum_probs=411.2
Q ss_pred CCChh-hHHHHHhhcCCCCceEEEC-----CccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhh
Q 008636 13 PLTPL-GFIERAATACDDCPSIIYN-----DTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPM 86 (558)
Q Consensus 13 ~~tl~-~~l~~~a~~~p~~~a~~~~-----~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 86 (558)
..++. ++|+++++++|+++|+++. ++++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||++
T Consensus 54 ~~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~ 133 (580)
T 3etc_A 54 NFNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHK 133 (580)
T ss_dssp SCCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHh
Confidence 34565 9999999999999999972 36899999999999999999999999999999999999999999999999
Q ss_pred cCcEEEeccccCChHHHHHHHhhcCccEEEEeCcCh--HHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCCCCCCCC
Q 008636 87 SGAIFNTINTRLDARTISIILKHSESKLVFVDHLSS--SLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPPAD 164 (558)
Q Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (558)
+|++++|+++.++.+++.+++++++++++|++.+.. ..+.+........ ...++.+..... .
T Consensus 134 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--------------~ 197 (580)
T 3etc_A 134 LGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDI--PLKKAKVGGDVL--------------E 197 (580)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSC--CCEEEEESSSCC--------------T
T ss_pred CCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCc--ceEEEEeCCccc--------------c
Confidence 999999999999999999999999999999988764 5555554433211 133444432210 1
Q ss_pred chhhHHHhhcCCCCCCCCC---CCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhcccccccCCCCEEEEecCchh
Q 008636 165 FVDTYENMLAKGDPQFSWV---RPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFH 241 (558)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 241 (558)
.+..+.+.+.......... ....++|+++|+|||||||.||+|.++|.++............+.+++++++..|++|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (580)
T 3etc_A 198 GWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGW 277 (580)
T ss_dssp TCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTS
T ss_pred ccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHH
Confidence 1345555554433322222 2467889999999999999999999999988777666556677889999999999988
Q ss_pred hhhhh-HHHHHHHhcceEEEe--cCCCHHHHHHHHHHhCCcEEEehHHHHHHHhcCc-cccCCCCceEEEEecCCCChhh
Q 008636 242 NNGWS-FTWGAAVVGATNVCL--RKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSP-EAKQLDRPVRILTAGSPPPAPV 317 (558)
Q Consensus 242 ~~g~~-~~~~~l~~g~~~~~~--~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~-~~~~~~~l~~v~~~g~~l~~~~ 317 (558)
..+.. .++.++..|+++++. ..+++..+++.++++++|+++++|++++.|.+.. ....++++|.+++||+++++++
T Consensus 278 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~l~~lr~i~~gGe~l~~~~ 357 (580)
T 3etc_A 278 GKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEPLNPEV 357 (580)
T ss_dssp THHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---CCTTCCEEEECSSCCCHHH
T ss_pred HHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcccccCCCccceEEEEccCCCCHHH
Confidence 87764 478888999999888 4689999999999999999999999999998865 4456789999999999999999
Q ss_pred hHHhhh-cCCeeeecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCCCCCeeeEE
Q 008636 318 LLRTES-LGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEI 396 (558)
Q Consensus 318 ~~~~~~-~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel 396 (558)
.+++.+ +++++++.||+||++.++...... ....+++|.|.+++ +++|+|+ ++++++.| +.|||
T Consensus 358 ~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~~G~p~~~~-~v~ivd~-~g~~~~~g--~~GEl 422 (580)
T 3etc_A 358 FNRFLEFTGIKLMEGFGQTETVVTIATFPWM-----------EPKPGSIGKPTPGY-KIELMDR-DGRLCEVG--EEGEI 422 (580)
T ss_dssp HHHHHHHHSCCCEEEECCTTSSCCEECCTTS-----------CCCTTCCBEECTTC-EEEEECT-TSCBCCTT--CCEEE
T ss_pred HHHHHHHhCCeEecccccccccceeecCCCC-----------CCCCCccccCCCCC-EEEEECC-CCCCCCCC--CceEE
Confidence 999984 699999999999998765543311 12346899999999 9999998 68899888 88999
Q ss_pred EEec-----ccccccccCCchhhcccccCCceeeCceeEEccCCcEEEecccCCeeeeCceeechHHHHHHHhcCCCcce
Q 008636 397 VMRG-----GSLMLGYLKDPEATSKCMKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNE 471 (558)
Q Consensus 397 ~v~~-----~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~ 471 (558)
+|+| ++++.||+++|+.+.+.|.+|||+|||+|++|+||++++.||+||+||++|++|+|.+||++|.++|+|.+
T Consensus 423 ~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~ 502 (580)
T 3etc_A 423 VINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLE 502 (580)
T ss_dssp EEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEE
T ss_pred EEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeee
Confidence 9997 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeeCCCCCceeEEEEEecCCCCCCCCCCCHHHHHHHHHhcCCCccccCeEEEecccCCCCCCcchhHHHHHHHhh
Q 008636 472 AAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIANS 550 (558)
Q Consensus 472 ~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GK~~r~~l~~~~~~ 550 (558)
++|++.+++..|+.++++|++.++.... ....++|+++++++|++|++|+.++++++||+|++||++|++|++++.+
T Consensus 503 a~Vvg~~~~~~g~~~~a~vv~~~~~~~~--~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 503 CAITGVPDPVRGQVIKATIVLTKDYTPS--DSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp EEEEEEEETTTEEEEEEEEEECTTCCCC--HHHHHHHHHHHHHHSCGGGCCSEEEEECC--------------------
T ss_pred EEEEeeeccCCCcEEEEEEEECCCCCCC--HHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhc
Confidence 9999999999999999999998775411 0235789999999999999999999999999999999999999998764
No 11
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=9.7e-78 Score=627.84 Aligned_cols=503 Identities=22% Similarity=0.301 Sum_probs=430.5
Q ss_pred CChhh-HHHHHhhcCCCCceEEE--CCccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCcE
Q 008636 14 LTPLG-FIERAATACDDCPSIIY--NDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAI 90 (558)
Q Consensus 14 ~tl~~-~l~~~a~~~p~~~a~~~--~~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 90 (558)
+|+.+ +|.++++++ +++|+++ .++++||+||.+++.++|+.|+++|+++||+|+|+++|++++++++|||+++|++
T Consensus 25 ~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav 103 (548)
T 2d1s_A 25 AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVG 103 (548)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCE
T ss_pred CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCE
Confidence 58899 888888889 9999998 4689999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccCChHHHHHHHhhcCccEEEEeCcChHHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCCCCCCCCchhhHH
Q 008636 91 FNTINTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPPADFVDTYE 170 (558)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (558)
++|++|.++.+++.+++++++++++|++.+....+.......+ ....++.++.... . .....+.
T Consensus 104 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-------~------~~~~~~~ 167 (548)
T 2d1s_A 104 VAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVT---TIKTIVILDSKVD-------Y------RGYQCLD 167 (548)
T ss_dssp EEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHST---TCCEEEETTCSSC-------B------TTBCBHH
T ss_pred EeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCC---CCCEEEEeCCccc-------c------cccccHH
Confidence 9999999999999999999999999999988777666544332 1233443332110 0 0122344
Q ss_pred HhhcCCCCC-CCCCCCC-----CCCCceEEEccCCCCCCCceeeecHHHHHHHHHhcccc---cccCCCCEEEEecCchh
Q 008636 171 NMLAKGDPQ-FSWVRPK-----SDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLID---WVVPKQSVLLWTLPMFH 241 (558)
Q Consensus 171 ~~~~~~~~~-~~~~~~~-----~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~ 241 (558)
++....... ....... .++++++|+|||||||.||+|.++|+++.......... +++.+++++++..|++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 247 (548)
T 2d1s_A 168 TFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHH 247 (548)
T ss_dssp HHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTS
T ss_pred HHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHH
Confidence 544432111 1110111 23899999999999999999999999998777666555 67889999999999999
Q ss_pred hhhhhH-HHHHHHhcceEEEecCCCHHHHHHHHHHhCCcEEEehHHHHHHHhcCc--cccCCCCceEEEEecCCCChhhh
Q 008636 242 NNGWSF-TWGAAVVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSP--EAKQLDRPVRILTAGSPPPAPVL 318 (558)
Q Consensus 242 ~~g~~~-~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~--~~~~~~~l~~v~~~g~~l~~~~~ 318 (558)
..++.. ++.++ .|+++++.+.+++..+++.++++++|+++++|+++..|.+.. ....++++|.+++||+++++++.
T Consensus 248 ~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~ 326 (548)
T 2d1s_A 248 GFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVG 326 (548)
T ss_dssp HHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHH
T ss_pred HHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHH
Confidence 999865 55666 999999999899999999999999999999999999998875 33467899999999999999999
Q ss_pred HHhhh-c-CCeeeecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCCCCCeeeEE
Q 008636 319 LRTES-L-GFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEI 396 (558)
Q Consensus 319 ~~~~~-~-~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel 396 (558)
+++.+ + ++.+++.||+||++++++.+... .....++|.|.+++ +++|+|+++++++++| +.|||
T Consensus 327 ~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl 392 (548)
T 2d1s_A 327 EAVARRFNLPGVRQGYGLTETTSAIIITPEG-----------DDKPGASGKVVPLF-KAKVIDLDTKKSLGPN--RRGEV 392 (548)
T ss_dssp HHHHHHTTCSCCEEEEECGGGSSEEEECCTT-----------CCCTTCCBEECTTC-EEEEECTTTCCBCCTT--CCEEE
T ss_pred HHHHHHcCCCceeeccccccccceeeecCcc-----------cCCCCCCCccCCCc-eEEEEeCCcCccCCCC--CCeEE
Confidence 99984 5 78899999999998776653211 12346889999998 9999997789999988 78999
Q ss_pred EEecccccccccCCchhhcccc-cCCceeeCceeEEccCCcEEEecccCCeeeeCceeechHHHHHHHhcCCCcceeEEE
Q 008636 397 VMRGGSLMLGYLKDPEATSKCM-KDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVV 475 (558)
Q Consensus 397 ~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~ 475 (558)
+++|++++.|||++|+.+...| .+|||+|||+|++++||.+++.||+||+||++|++|+|.+||+.|.++|+|.+++|+
T Consensus 393 ~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~ 472 (548)
T 2d1s_A 393 CVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVA 472 (548)
T ss_dssp EEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEE
T ss_pred EECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEE
Confidence 9999999999999999999888 689999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCCceeEEEEEecCCCCCCCCCCCHHHHHHHHHhcCCCccccC-eEEEecccCCCCCCcchhHHHHHHHhhccc
Q 008636 476 GRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPK-TVVFIDELPKTATGKVQKYVLGDIANSMSM 553 (558)
Q Consensus 476 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~-~i~~v~~~P~t~~GK~~r~~l~~~~~~~~~ 553 (558)
+.+++..|+.++++|++.++.. .+.++++++++++|+.|++|+ .++++++||+|++||++|++|++++.+.+.
T Consensus 473 ~~~~~~~g~~~~a~vv~~~~~~-----~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~ 546 (548)
T 2d1s_A 473 GVPDPVAGELPGAVVVLESGKN-----MTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPVA 546 (548)
T ss_dssp EEEETTTEEEEEEEEEECTTCC-----CCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC-
T ss_pred EEEcCCCCeeeEEEEEEcCCCC-----CCHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhhhh
Confidence 9999988999999999877654 678999999999999999999 999999999999999999999999987654
No 12
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=2.2e-79 Score=641.47 Aligned_cols=511 Identities=23% Similarity=0.321 Sum_probs=335.6
Q ss_pred CCCCCCCChhhHHHHHhhcCCCCceEE---E--CCccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 008636 8 PANSCPLTPLGFIERAATACDDCPSII---Y--NDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHF 82 (558)
Q Consensus 8 ~~~~~~~tl~~~l~~~a~~~p~~~a~~---~--~~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 82 (558)
+.+..++|+.++|.++++++|+++|++ + .++++||+||.+++.++|++|+++|+++||+|+|+++|++++++++|
T Consensus 14 ~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 93 (550)
T 3rix_A 14 FYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVL 93 (550)
T ss_dssp SSCCCCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred CCCcccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHH
Confidence 455667899999999999999999976 3 35799999999999999999999999999999999999999999999
Q ss_pred HHhhcCcEEEeccccCChHHHHHHHhhcCccEEEEeCcChHHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCCCCCC
Q 008636 83 AVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPP 162 (558)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (558)
||+++|++++|++|.++.+++.++++.++++++|++.+....+.......+. ...++.++.....
T Consensus 94 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~------------ 158 (550)
T 3rix_A 94 GALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPI---IQKIIIMDSKTDY------------ 158 (550)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTT---CCEEEETTCSSCB------------
T ss_pred HHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCC---cceEEEEcCCccc------------
Confidence 9999999999999999999999999999999999999888887777665542 3444444332111
Q ss_pred CCchhhHHHhhcCCCC------CCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhcccc---cccCCCCEE
Q 008636 163 ADFVDTYENMLAKGDP------QFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLID---WVVPKQSVL 233 (558)
Q Consensus 163 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~~---~~~~~~~~~ 233 (558)
.....+.++...... .........++++++|+|||||||.||+|.++|+++.......... +.+.+++++
T Consensus 159 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (550)
T 3rix_A 159 -QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAI 237 (550)
T ss_dssp -TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEE
T ss_pred -cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEE
Confidence 012333343332111 1111122345789999999999999999999999998776655544 467889999
Q ss_pred EEecCchhhhhhhHHHHHHHhcceEEEecCCCHHHHHHHHHHhCCcEEEehHHHHHHHhcCc--cccCCCCceEEEEecC
Q 008636 234 LWTLPMFHNNGWSFTWGAAVVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSP--EAKQLDRPVRILTAGS 311 (558)
Q Consensus 234 ~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~--~~~~~~~l~~v~~~g~ 311 (558)
++.+|++|..++...+.+++.|+++++.+.+++..+++.++++++|+++++|+++..|++.. ....++++|.+++||+
T Consensus 238 l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~ 317 (550)
T 3rix_A 238 LSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGA 317 (550)
T ss_dssp EECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSS
T ss_pred EEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecC
Confidence 99999999999988889999999999999999999999999999999999999999998876 4456889999999999
Q ss_pred CCChhhhHHhh-hcCCe-eeecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCCC
Q 008636 312 PPPAPVLLRTE-SLGFI-VSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRD 389 (558)
Q Consensus 312 ~l~~~~~~~~~-~~~~~-v~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~ 389 (558)
++++++.+++. .++.. +++.||+||++++++.+... ....+++|.|.+++ +++|+|++++.+++.|
T Consensus 318 ~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~~~~~~-~~~i~d~~~~~~~~~g 385 (550)
T 3rix_A 318 PLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG-----------DDKPGAVGKVVPFF-EAKVVDLDTGKTLGVN 385 (550)
T ss_dssp CCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT-----------CCCTTEEEEECTTC-EEEEECTTTCCBCCTT
T ss_pred CCCHHHHHHHHHHcCCCccccccCcCccccceecCCCC-----------CCCCCCcccccCCc-EEEEEeCCCCcCCCCC
Confidence 99999999998 45664 89999999999877654321 12345789999998 9999998789999988
Q ss_pred CCeeeEEEEecccccccccCCchhhcccc-cCCceeeCceeEEccCCcEEEecccCCeeeeCceeechHHHHHHHhcCCC
Q 008636 390 GQTRGEIVMRGGSLMLGYLKDPEATSKCM-KDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPM 468 (558)
Q Consensus 390 ~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~ 468 (558)
+.|||+|+|++++.|||++|+.+...| .+|||+|||+|++++||++++.||+||+||++|++|+|.+||+.|.++|+
T Consensus 386 --~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~ 463 (550)
T 3rix_A 386 --QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPN 463 (550)
T ss_dssp --CCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC----------------------------
T ss_pred --CCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCC
Confidence 889999999999999999999999888 78999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEeeeCCCCCceeEEEEEecCCCCCCCCCCCHHHHHHHHHhcCCCcccc-CeEEEecccCCCCCCcchhHHHHHH
Q 008636 469 VNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVP-KTVVFIDELPKTATGKVQKYVLGDI 547 (558)
Q Consensus 469 v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p-~~i~~v~~~P~t~~GK~~r~~l~~~ 547 (558)
|.+++|++.+++..|+.++++|++.++.. .+.++++++++++++++..| ..++++++||+|++||++|++|+++
T Consensus 464 V~~a~vv~~~~~~~g~~~~a~vv~~~~~~-----~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~ 538 (550)
T 3rix_A 464 IFDAGVAGLPDDDAGELPAAVVVLEHGKT-----MTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREI 538 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cceEEEEEeecCCCCceEEEEEEecCCCC-----CCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHH
Confidence 99999999999999999999999887654 67788999999999988655 4799999999999999999999999
Q ss_pred Hhhccc
Q 008636 548 ANSMSM 553 (558)
Q Consensus 548 ~~~~~~ 553 (558)
+.+...
T Consensus 539 ~~~~~~ 544 (550)
T 3rix_A 539 LIKAKK 544 (550)
T ss_dssp ------
T ss_pred HHhhcc
Confidence 877543
No 13
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.7e-77 Score=622.31 Aligned_cols=498 Identities=20% Similarity=0.232 Sum_probs=418.9
Q ss_pred CChhhHHHHHhhcCCCCceEEECCccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCcEEEe
Q 008636 14 LTPLGFIERAATACDDCPSIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNT 93 (558)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~a~~~~~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~ 93 (558)
||+.++|+++++++|+++|+++.++++||+||.+++.++|++|.++|+++||+|+++++|++++++++|||+++|++++|
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vp 80 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP 80 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEE
T ss_pred CcHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChHHHHHHHhhcCccEEEEeCcChHHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCCCCCCCCchhhHHHhh
Q 008636 94 INTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPPADFVDTYENML 173 (558)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (558)
+++.++.+++.++++.++++++|++...... ...... .. ...+.++.
T Consensus 81 l~~~~~~~~l~~il~~~~~~~~i~~~~~~~~------------~~~~~~-~~--------------------~~~~~~~~ 127 (512)
T 3fce_A 81 VDLSIPADRVQRIAENSGAKLLLSATAVTVT------------DLPVRI-VS--------------------EDNLKDIF 127 (512)
T ss_dssp EETTSCHHHHHHHHHHSCCCEEEESSCCCSS------------CCSSEE-EE--------------------THHHHHHH
T ss_pred eCCCCcHHHHHHHHHhcCCCEEEecCccccc------------ccccce-ec--------------------hhhhhhhc
Confidence 9999999999999999999999987532100 011111 10 01122221
Q ss_pred c-CCCCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhcccccccCCCCEEEEecCchhhhhhhHHHHHH
Q 008636 174 A-KGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTWGAA 252 (558)
Q Consensus 174 ~-~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l 252 (558)
. .............++++++|+|||||||.||+|.++|+++..........+++.++|++++..|++|..++..++.++
T Consensus 128 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 207 (512)
T 3fce_A 128 FTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSL 207 (512)
T ss_dssp HHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHH
T ss_pred ccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHH
Confidence 1 111111222345678999999999999999999999999998888888888999999999999999999998899999
Q ss_pred HhcceEEEecC---CCHHHHHHHHHHhCCcEEEehHHHHHHHhcCc--cccCCCCceEEEEecCCCChhhhHHhhh-c-C
Q 008636 253 VVGATNVCLRK---FDAPTVFALIRKHGVTHMCGAPIVLNLLSSSP--EAKQLDRPVRILTAGSPPPAPVLLRTES-L-G 325 (558)
Q Consensus 253 ~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~--~~~~~~~l~~v~~~g~~l~~~~~~~~~~-~-~ 325 (558)
+.|+++++.+. +++..+++.++++++|++.++|+++..++... ....++++|.+++||+++++++.+++.+ + +
T Consensus 208 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~ 287 (512)
T 3fce_A 208 VTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPK 287 (512)
T ss_dssp HTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTT
T ss_pred hCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCC
Confidence 99999999875 68999999999999999999999999998776 4456789999999999999999999984 5 8
Q ss_pred CeeeecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCCCCCeeeEEEEecccccc
Q 008636 326 FIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLML 405 (558)
Q Consensus 326 ~~v~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~ 405 (558)
+++++.||+||++++++...... .........++|.+.+++ +++|+|+ ++.+++.| +.|||+++|++++.
T Consensus 288 ~~i~~~YG~TE~~~~~~~~~~~~------~~~~~~~~~~~G~~~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~v~~ 357 (512)
T 3fce_A 288 ATIMNTYGPTEATVAVTGIHVTE------EVLDQYKSLPVGYCKSDC-RLLIMKE-DGTIAPDG--EKGEIVIVGPSVSV 357 (512)
T ss_dssp CEEEEEECCGGGSSCSEEEECCH------HHHHHCSSCCCEEECTTC-EEEEECS-SSCBCCTT--SCEEEEEESTTSCS
T ss_pred CEEEeCcccChhhhheeeEEecc------ccccccCCCccccccCCc-EEEEECC-CCCCCCCC--CeEEEEEeccccCh
Confidence 99999999999988766543111 111222445789999998 9999997 78899888 78999999999999
Q ss_pred cccCCchhhccccc----CCceeeCceeEEccCCcEEEecccCCeeeeCceeechHHHHHHHhcCCCcceeEEEeeeCCC
Q 008636 406 GYLKDPEATSKCMK----DGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPF 481 (558)
Q Consensus 406 gy~~~~~~~~~~~~----~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 481 (558)
|||++|+.+...|. +|||+|||+|++ +||.+++.||+||+||++|++|+|.+||+.|.++|+|.+++|++.+++.
T Consensus 358 GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~ 436 (512)
T 3fce_A 358 GYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGE 436 (512)
T ss_dssp CBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETT
T ss_pred hhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCC
Confidence 99999999998883 569999999999 6999999999999999999999999999999999999999999999888
Q ss_pred CCceeEEEEEecCCCCCCCCCCCHHHHHHHHHhcCCCccccCeEEEecccCCCCCCcchhHHHHHHHhhcccccC
Q 008636 482 WQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIANSMSMSHS 556 (558)
Q Consensus 482 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GK~~r~~l~~~~~~~~~~~~ 556 (558)
.++.+++++++.++.... .....++++++++++|+.|++|+.++++++||+|++||++|++|++.+.+...++.
T Consensus 437 ~~~~~~a~vv~~~~~~~~-~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~~~~ 510 (512)
T 3fce_A 437 KYDYLLAVVVPGEHSFEK-EFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEHHHH 510 (512)
T ss_dssp EEEEEEEEEEECSCCCSS-HHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC------
T ss_pred CceEEEEEEecCCccccc-hhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhcccccc
Confidence 889999999987654310 00124679999999999999999999999999999999999999999999887764
No 14
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.6e-76 Score=620.56 Aligned_cols=504 Identities=22% Similarity=0.305 Sum_probs=425.8
Q ss_pred ChhhHHHHHhhc-----CCCCceEEEC-----CccccHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCchhHHHHHHH
Q 008636 15 TPLGFIERAATA-----CDDCPSIIYN-----DTTYTWSQTYRRCLQLASSLSSF-GINPGHVVSVIAPNIPAMYELHFA 83 (558)
Q Consensus 15 tl~~~l~~~a~~-----~p~~~a~~~~-----~~~~Ty~~l~~~v~~la~~L~~~-Gv~~gd~V~i~~~~~~~~~~~~lA 83 (558)
++.++|+++++. +|+++|+++. ++++||+||.+++.++|++|++. |+++||+|+|+++|++++++++||
T Consensus 39 ~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA 118 (570)
T 3c5e_A 39 FASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILG 118 (570)
T ss_dssp HHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 457899999998 9999999982 37899999999999999999998 999999999999999999999999
Q ss_pred HhhcCcEEEeccccCChHHHHHHHhhcCccEEEEeCcChHHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCCCCCCC
Q 008636 84 VPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPPA 163 (558)
Q Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (558)
|+++|++++|+++.++.+++.++++.++++++|++.+....+.......+ ....++.++....
T Consensus 119 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-------------- 181 (570)
T 3c5e_A 119 CIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECP---SLRIKLLVSEKSC-------------- 181 (570)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCT---TCCEEEEESSSCC--------------
T ss_pred HHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCC---ceeEEEEecccCc--------------
Confidence 99999999999999999999999999999999999988777766554433 1334444432110
Q ss_pred CchhhHHHhhcCCCCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHH-HHHhcccccccCCCCEEEEecCchhh
Q 008636 164 DFVDTYENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFI-IAVDSLIDWVVPKQSVLLWTLPMFHN 242 (558)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~ 242 (558)
.....+.+++........ .....++++++|+|||||||.||+|.++|+.+.. ..... ..+++.++|++++..|++|.
T Consensus 182 ~~~~~~~~~~~~~~~~~~-~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~ 259 (570)
T 3c5e_A 182 DGWLNFKKLLNEASTTHH-CVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWTGLQASDIMWTISDTGWI 259 (570)
T ss_dssp TTSEEHHHHHHHSCSCCC-CCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTTSCCTTCEEEECCCTTSH
T ss_pred cccccHHHHhhccccccc-ccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhcCCCCCceEEEcCchHHH
Confidence 002345555443322211 1235678999999999999999999999994332 33333 56778899999999999999
Q ss_pred hhhh-HHHHHHHhcceEEEec--CCCHHHHHHHHHHhCCcEEEehHHHHHHHhcCc-cccCCCCceEEEEecCCCChhhh
Q 008636 243 NGWS-FTWGAAVVGATNVCLR--KFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSP-EAKQLDRPVRILTAGSPPPAPVL 318 (558)
Q Consensus 243 ~g~~-~~~~~l~~g~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~-~~~~~~~l~~v~~~g~~l~~~~~ 318 (558)
.++. .++.++..|+++++.+ .+++..+++.++++++|+++++|++++.|.+.. ....++++|.+++||+++++++.
T Consensus 260 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~l~~~~~ 339 (570)
T 3c5e_A 260 LNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETL 339 (570)
T ss_dssp HHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSCCCHHHH
T ss_pred HHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCCcCCHHHH
Confidence 9985 6888999999999986 689999999999999999999999999998764 33457899999999999999999
Q ss_pred HHhhh-cCCeeeecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCCCCCeeeEEE
Q 008636 319 LRTES-LGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIV 397 (558)
Q Consensus 319 ~~~~~-~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~ 397 (558)
+.+.+ +++++++.||+||++.+++..... ....+++|.|.+++ +++|+|+ ++++++.| +.|||+
T Consensus 340 ~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~~~~-~v~i~d~-~g~~~~~G--~~GEl~ 404 (570)
T 3c5e_A 340 ENWRAQTGLDIRESYGQTETGLTCMVSKTM-----------KIKPGYMGTAASCY-DVQIIDD-KGNVLPPG--TEGDIG 404 (570)
T ss_dssp HHHHHHHSCCCEEEEEETTTEEEEECCTTS-----------CCCTTCCCEECTTC-CEEEECT-TSCBCCTT--CCEEEE
T ss_pred HHHHHHhCCchhhccchhhcccceecCccc-----------ccCCCcccccCCCc-eEEEECC-CCCCCCCC--CCCeeE
Confidence 99984 699999999999998665443210 12346899999998 9999997 68899888 789999
Q ss_pred Ee-----cccccccccCCchhhcccccCCceeeCceeEEccCCcEEEecccCCeeeeCceeechHHHHHHHhcCCCccee
Q 008636 398 MR-----GGSLMLGYLKDPEATSKCMKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEA 472 (558)
Q Consensus 398 v~-----~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~ 472 (558)
++ |++++.|||++|+.+...|.+|||+|||+|++++||.+++.||+||+||++|++|+|.+||+.|.++|+|.++
T Consensus 405 v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a 484 (570)
T 3c5e_A 405 IRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVET 484 (570)
T ss_dssp EECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEE
T ss_pred EeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceE
Confidence 99 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeCCCCCceeEEEEEecCCCCCCCCCCCHHHHHHHHHhcCCCccccCeEEEecccCCCCCCcchhHHHHHHHhhcc
Q 008636 473 AVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIANSMS 552 (558)
Q Consensus 473 ~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GK~~r~~l~~~~~~~~ 552 (558)
+|++.+++..++.++++|++.++....+.....++|+++++++|+.|++|+.|+++++||+|++||++|++|++.+.+.+
T Consensus 485 ~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~s 564 (570)
T 3c5e_A 485 AVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKMS 564 (570)
T ss_dssp EEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC--
T ss_pred EEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHhhh
Confidence 99999999889999999998765321111123678999999999999999999999999999999999999999986654
No 15
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1e-76 Score=631.44 Aligned_cols=512 Identities=21% Similarity=0.293 Sum_probs=427.4
Q ss_pred ChhhHHHHHhhcCCCCceEEE------CCccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcC
Q 008636 15 TPLGFIERAATACDDCPSIIY------NDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSG 88 (558)
Q Consensus 15 tl~~~l~~~a~~~p~~~a~~~------~~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 88 (558)
++.++|+++++++|+++|+++ .++++||+||.+++.++|++|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 156 (652)
T 1pg4_A 77 LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 156 (652)
T ss_dssp HHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 467889899999999999998 23689999999999999999999999999999999999999999999999999
Q ss_pred cEEEeccccCChHHHHHHHhhcCccEEEEeCcCh---------HHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCCC
Q 008636 89 AIFNTINTRLDARTISIILKHSESKLVFVDHLSS---------SLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPR 159 (558)
Q Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (558)
++++|+++.++.+++.+++++++++++|+++... ..+.+....... .....++.+....... .
T Consensus 157 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vi~~~~~~~~~-------~ 228 (652)
T 1pg4_A 157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNV-TSVEHVIVLKRTGSDI-------D 228 (652)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTC-CSCCEEEEECSSCCCC-------C
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCc-CCCCEEEEEeCCCCcc-------c
Confidence 9999999999999999999999999999987542 234444332210 1134555554321100 0
Q ss_pred CCCCCchhhHHHhhcCCCCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHH-hcccccccCCCCEEEEecC
Q 008636 160 IPPADFVDTYENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAV-DSLIDWVVPKQSVLLWTLP 238 (558)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~p 238 (558)
... .....|.+++....... ...+..++++++|+|||||||.||||+++|+++..... .....+++.++|++++..|
T Consensus 229 ~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~ 306 (652)
T 1pg4_A 229 WQE-GRDLWWRDLIEKASPEH-QPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTAD 306 (652)
T ss_dssp CCB-TTEEEHHHHHTTSCSCC-CCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSC
T ss_pred ccC-CCceeHHHHHhhcCCCC-CccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccC
Confidence 000 01245666665433221 12235678999999999999999999999999876554 3344577899999999999
Q ss_pred chhhhhh-hHHHHHHHhcceEEEecC----CCHHHHHHHHHHhCCcEEEehHHHHHHHhcCcc----ccCCCCceEEEEe
Q 008636 239 MFHNNGW-SFTWGAAVVGATNVCLRK----FDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPE----AKQLDRPVRILTA 309 (558)
Q Consensus 239 ~~~~~g~-~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~----~~~~~~l~~v~~~ 309 (558)
++|..|+ ..++.+++.|+++++.+. +++..+++.++++++|+++++|++++.|.+... ...++++|.+++|
T Consensus 307 ~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~g 386 (652)
T 1pg4_A 307 VGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSV 386 (652)
T ss_dssp TTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEE
T ss_pred CeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEe
Confidence 9999998 668899999999999874 589999999999999999999999999988752 3457899999999
Q ss_pred cCCCChhhhHHhh-hcC---CeeeecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcc
Q 008636 310 GSPPPAPVLLRTE-SLG---FIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLS 385 (558)
Q Consensus 310 g~~l~~~~~~~~~-~~~---~~v~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~ 385 (558)
|+++++++++++. .++ +++++.||+||++++++...... .....+++|.|.+++ +++|+|+ ++++
T Consensus 387 Ge~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~---------~~~~~~s~G~p~~g~-~v~i~d~-~g~~ 455 (652)
T 1pg4_A 387 GEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA---------IELKAGSATRPFFGV-QPALVDN-EGHP 455 (652)
T ss_dssp SSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTT---------CCBCTTCCBSBCTTC-CEEEECT-TCCB
T ss_pred cCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCC---------cCccCCccccCcCCC-eEEEECC-CCCC
Confidence 9999999999988 456 89999999999987666542110 112346899999998 9999997 6888
Q ss_pred cCCCCCeeeEEEEec--ccccccccCCchhhcccc---cCCceeeCceeEEccCCcEEEecccCCeeeeCceeechHHHH
Q 008636 386 VKRDGQTRGEIVMRG--GSLMLGYLKDPEATSKCM---KDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIE 460 (558)
Q Consensus 386 ~~~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE 460 (558)
++.+ +.|||+|+| |+++.|||++++.+...+ .+|||+|||+|++|+||++++.||+||+||++|++|+|.+||
T Consensus 456 v~~g--~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE 533 (652)
T 1pg4_A 456 QEGA--TEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533 (652)
T ss_dssp CCSS--EEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHH
T ss_pred cCCC--ceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHH
Confidence 8887 889999999 789999999998877665 379999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcceeEEEeeeCCCCCceeEEEEEecCCCCCCCCCCCHHHHHHHHHhcCCCccccCeEEEecccCCCCCCcch
Q 008636 461 SVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQ 540 (558)
Q Consensus 461 ~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GK~~ 540 (558)
++|.+||+|.+++|++.+++..|+.++++|++.++.... ....++|+++++++|++|++|+.|+++++||+|++||++
T Consensus 534 ~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~--~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~ 611 (652)
T 1pg4_A 534 SALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPS--PELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIM 611 (652)
T ss_dssp HHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC--HHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBC
T ss_pred HHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCC--HHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccch
Confidence 999999999999999999998899999999998764310 012578999999999999999999999999999999999
Q ss_pred hHHHHHHHhhc
Q 008636 541 KYVLGDIANSM 551 (558)
Q Consensus 541 r~~l~~~~~~~ 551 (558)
|++|++++.+.
T Consensus 612 R~~L~~~~~~~ 622 (652)
T 1pg4_A 612 RRILRKIAAGD 622 (652)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhCC
Confidence 99999999875
No 16
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=2.1e-76 Score=613.62 Aligned_cols=495 Identities=20% Similarity=0.226 Sum_probs=424.9
Q ss_pred CChhhHHHHHhhcCCCCceEEECCccccHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCchhHHHHHHHHhhcCcEEE
Q 008636 14 LTPLGFIERAATACDDCPSIIYNDTTYTWSQTYRRCLQLASSLSSF-GINPGHVVSVIAPNIPAMYELHFAVPMSGAIFN 92 (558)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~a~~~~~~~~Ty~~l~~~v~~la~~L~~~-Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v 92 (558)
||+.++|+++++++|+++|+.+.++++||+||.+++.++|++|.++ |.++|++|+++++|++++++++|||+++|++++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 80 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI 80 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEE
T ss_pred CcHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEE
Confidence 6899999999999999999999999999999999999999999985 888999999999999999999999999999999
Q ss_pred eccccCChHHHHHHHhhcCccEEEEeCcChHHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCCCCCCCCchhhHHHh
Q 008636 93 TINTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPPADFVDTYENM 172 (558)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (558)
|+++.++.+++.++++.++++++|++...... ... .... ...+.++
T Consensus 81 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~~---~~~~-------------------------~~~~~~~ 126 (511)
T 3e7w_A 81 PVDLSIPSERIAKIIESSGAELLIHAAGLSID------AVG---QQIQ-------------------------TVSAEEL 126 (511)
T ss_dssp EEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CCC---CSSC-------------------------EEEHHHH
T ss_pred ecCCCChHHHHHHHHHhCCCCEEEecccccch------hcc---cccc-------------------------eecHhhh
Confidence 99999999999999999999999996542100 000 0000 1233344
Q ss_pred hcCCCCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhcccccccCCCCEEEEecCchhhhhhhHHHHHH
Q 008636 173 LAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTWGAA 252 (558)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l 252 (558)
...............++++++|+|||||||.||+|.++|+++.....+....+++..++++++..|++|..++..++.++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 206 (511)
T 3e7w_A 127 LENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCL 206 (511)
T ss_dssp HTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHH
T ss_pred hccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHH
Confidence 33332222223345678999999999999999999999999998888887888899999999999999999998899999
Q ss_pred HhcceEEEecC---CCHHHHHHHHHHhCCcEEEehHHHHHHHhcCc--cccCCCCceEEEEecCCCChhhhHHhhh-c-C
Q 008636 253 VVGATNVCLRK---FDAPTVFALIRKHGVTHMCGAPIVLNLLSSSP--EAKQLDRPVRILTAGSPPPAPVLLRTES-L-G 325 (558)
Q Consensus 253 ~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~--~~~~~~~l~~v~~~g~~l~~~~~~~~~~-~-~ 325 (558)
..|+++++.+. +++..+++.++++++|++.++|+++..++... ....++++|.+++||+++++++.+.+.+ + +
T Consensus 207 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~ 286 (511)
T 3e7w_A 207 QSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPK 286 (511)
T ss_dssp HTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTT
T ss_pred hcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCC
Confidence 99999999875 68999999999999999999999999998876 4456789999999999999999999984 5 8
Q ss_pred CeeeecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCCCCCeeeEEEEecccccc
Q 008636 326 FIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLML 405 (558)
Q Consensus 326 ~~v~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~ 405 (558)
+++++.||+||++++++.+.... .........++|.|.+++ +++|+|+ ++++++.| +.|||+|+|++++.
T Consensus 287 ~~i~~~YG~TE~~~~~~~~~~~~------~~~~~~~~~~~G~~~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~v~~ 356 (511)
T 3e7w_A 287 AKIFNTYGPTEATVAVTSVEITN------DVISRSESLPVGFAKPDM-NIFIMDE-EGQPLPEG--EKGEIVIAGPSVSR 356 (511)
T ss_dssp CEEEECCCCGGGSSCSEEEEECH------HHHTTCSSCCCBEECTTC-EEEEECT-TSCBCCTT--CCEEEEEESTTSCC
T ss_pred cEEEeCcccchheeeeeEEeccc------cccccCCcCCCcceeCCC-EEEEECC-CCCCCCCC--CceEEEEecCccCh
Confidence 99999999999988776543211 111122345689999998 9999998 68999988 88999999999999
Q ss_pred cccCCchhhcccc--cCC--ceeeCceeEEccCCcEEEecccCCeeeeCceeechHHHHHHHhcCCCcceeEEEeeeCCC
Q 008636 406 GYLKDPEATSKCM--KDG--RYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPF 481 (558)
Q Consensus 406 gy~~~~~~~~~~~--~~g--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 481 (558)
|||++|+.+...| .+| ||+|||+|++ +||.+++.||+||+||++|++|+|.+||+.|.++|+|.+++|++.+++.
T Consensus 357 GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~ 435 (511)
T 3e7w_A 357 GYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNG 435 (511)
T ss_dssp CBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSS
T ss_pred hhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCC
Confidence 9999999999888 344 7999999999 5999999999999999999999999999999999999999999999888
Q ss_pred CCceeEEEEEecCCCCCCCCCCCHHHHHHHHHhcCCCccccCeEEEecccCCCCCCcchhHHHHHHHhhcccc
Q 008636 482 WQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIANSMSMS 554 (558)
Q Consensus 482 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GK~~r~~l~~~~~~~~~~ 554 (558)
.++.+++++++.++.... .....++++++++++|+.|++|+.++++++||+|++||++|++|++.+.+....
T Consensus 436 ~~~~~~a~vv~~~~~~~~-~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~~~ 507 (511)
T 3e7w_A 436 TVEYLIAAIVPEEHEFEK-EFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRSHH 507 (511)
T ss_dssp SCCEEEEEEEECCCCCSS-HHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHHTC
T ss_pred CceEEEEEEEeccccccc-hhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhccc
Confidence 899999999987764310 001246799999999999999999999999999999999999999998876543
No 17
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=2.5e-77 Score=619.81 Aligned_cols=497 Identities=24% Similarity=0.358 Sum_probs=394.4
Q ss_pred CChhhHHHHHhhcCCCCceEEECCccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCcEEEe
Q 008636 14 LTPLGFIERAATACDDCPSIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNT 93 (558)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~a~~~~~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~ 93 (558)
|||.++|+++++++|+++|+++.++++||+||.+++.++|++|+++ +||+|+|+++|++++++++|||+++|++++|
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp 77 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAM 77 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEe
Confidence 6889999999999999999999999999999999999999999986 8999999999999999999999999999999
Q ss_pred ccccCChHHHHHHHhhcCccEEEEeCcChHHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCCCCCCCCchhhHHHhh
Q 008636 94 INTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPPADFVDTYENML 173 (558)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (558)
+++.++.+++.++++.++++++|++.+........... . ....+......... ....... ..........
T Consensus 78 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~ 147 (501)
T 3ipl_A 78 INTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSL-D---DIEFAGRDITTNGL---LDNTMGI---QYDTSNETVV 147 (501)
T ss_dssp CCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEET-T---C------------------------------------
T ss_pred cCccCCHHHHHHHHHhcCCCEEEEcccccccccccccc-c---cceeeeeecccccc---ccccccc---ccccchhhcc
Confidence 99999999999999999999999987643322111000 0 00000000000000 0000000 0000000111
Q ss_pred cCCCCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhcccccccCCCCEEEEecCchhhhhhhHHHHHHH
Q 008636 174 AKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTWGAAV 253 (558)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~ 253 (558)
..............++++++|+|||||||.||+|.++|+++..........+++.+++++++..|++|..|+..++.+++
T Consensus 148 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~ 227 (501)
T 3ipl_A 148 PKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVI 227 (501)
T ss_dssp --CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHH
T ss_pred ccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHH
Confidence 11111111122356789999999999999999999999999988888888888999999999999999999988999999
Q ss_pred hcceEEEecCCCHHHHHHHHHHhCCcEEEehHHHHHHHhcCccccCCCCceEEEEecCCCChhhhHHhhhcCCeeeeccc
Q 008636 254 VGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQLDRPVRILTAGSPPPAPVLLRTESLGFIVSHGYG 333 (558)
Q Consensus 254 ~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~l~~v~~~g~~l~~~~~~~~~~~~~~v~~~YG 333 (558)
.|+++++.+.+++..+++.++++++|++.++|+++..|.+....... ++|.+++||+++++++.+.+.+.++++++.||
T Consensus 228 ~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~YG 306 (501)
T 3ipl_A 228 EGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPY-NLQKILLGGAKLSATMIETALQYNLPIYNSFG 306 (501)
T ss_dssp HTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCT-TCCEEEECSSCCCHHHHHHHHHTTCCEEEEEE
T ss_pred cCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcC-cccEEEEeCCCCCHHHHHHHHHhCCCEecccc
Confidence 99999999999999999999999999999999999999876533333 89999999999999999999888999999999
Q ss_pred CCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCCCCCeeeEEEEecccccccccCCchh
Q 008636 334 KTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEA 413 (558)
Q Consensus 334 ~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~ 413 (558)
+||+++.+..+. .........++|.|.+++ +++|+|++ .+ +.|||+|+|++++.||+++++.
T Consensus 307 ~TE~~~~~~~~~---------~~~~~~~~~~~G~p~~~~-~~~i~d~~------~~--~~GEl~v~g~~~~~gY~~~~~~ 368 (501)
T 3ipl_A 307 MTETCSQFLTAT---------PEMLHARPDTVGMPSANV-DVKIKNPN------KE--GHGELMIKGANVMNGYLYPTDL 368 (501)
T ss_dssp EGGGTEEEEEEC---------HHHHHHCTTCCBEECTTC-EEEEESCC------SS--CCEEEEEESTTSCSCCSBSTTC
T ss_pred ccccccceeecC---------ccccccCCCCCCCCCCCc-EEEEecCC------CC--CccEEEEeccchhhhhCcChhh
Confidence 999987655432 222234456899999998 99999974 22 5699999999999999999998
Q ss_pred hcccccCCceeeCceeEEccCCcEEEecccCCeeeeCceeechHHHHHHHhcCCCcceeEEEeeeCCCCCceeEEEEEec
Q 008636 414 TSKCMKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLK 493 (558)
Q Consensus 414 ~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 493 (558)
+.. |.+|||+|||+|++++||.+++.||+||+||++|++|+|.+||+.|.++|+|.+++|++.+++..|+.++++++..
T Consensus 369 t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~ 447 (501)
T 3ipl_A 369 TGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE 447 (501)
T ss_dssp CCS-EETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES
T ss_pred cch-hcCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC
Confidence 887 8899999999999999999999999999999999999999999999999999999999999999899999998864
Q ss_pred CCCCCCCCCCCHHHHHHHHHhcCCCccccCeEEEecccCCCCCCcchhHHHHHHHhh
Q 008636 494 TGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIANS 550 (558)
Q Consensus 494 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GK~~r~~l~~~~~~ 550 (558)
.. .+.++++++++++|+.|++|+.++++++||+|++||++|++|++....
T Consensus 448 ~~-------~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~ 497 (501)
T 3ipl_A 448 SD-------ISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHH 497 (501)
T ss_dssp SC-------CCHHHHHHHHHHHSCGGGSCSEEEECSSCC------------------
T ss_pred CC-------CCHHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhcccc
Confidence 33 678999999999999999999999999999999999999999987654
No 18
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=9.3e-76 Score=621.65 Aligned_cols=499 Identities=24% Similarity=0.323 Sum_probs=428.4
Q ss_pred CCCCCChhhHHHHHhhcCCCCceEEECCccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCc
Q 008636 10 NSCPLTPLGFIERAATACDDCPSIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGA 89 (558)
Q Consensus 10 ~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 89 (558)
-+.++|+.++|+++++ |+++|+++.++++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++|+
T Consensus 23 ~~~~~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~ 100 (617)
T 3rg2_A 23 YWQDLPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGV 100 (617)
T ss_dssp SCCCCCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTC
T ss_pred CCCcCCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCe
Confidence 3567899999999997 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccCChHHHHHHHhhcCccEEEEeCcCh-----HHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCCCCCCCC
Q 008636 90 IFNTINTRLDARTISIILKHSESKLVFVDHLSS-----SLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPPAD 164 (558)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (558)
+++|++|..+.+++..+++.+++++++++.... ........... ....+.......
T Consensus 101 ~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---------------- 161 (617)
T 3rg2_A 101 APVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHS---SIRVVQLLNDSG---------------- 161 (617)
T ss_dssp EEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHST---TCCEEEEETCCS----------------
T ss_pred EEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCC---ccceeeeccccc----------------
Confidence 999999999999999999999999999987654 22222222222 122333332221
Q ss_pred chhhHHHhhcCCCCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhcccccccCCCCEEEEecCchhhhh
Q 008636 165 FVDTYENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNG 244 (558)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g 244 (558)
...+.+......... ...+..++++++|+|||||||.||+|.++|+++..........+++.+++++++.+|++|.++
T Consensus 162 -~~~~~~~~~~~~~~~-~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 239 (617)
T 3rg2_A 162 -EHNLQDAINHPAEDF-TATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYA 239 (617)
T ss_dssp -TTBHHHHHHSCCSSC-CCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHH
T ss_pred -ccchhhhhccccccc-CCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhh
Confidence 122333333322221 123456789999999999999999999999999988888888888999999999999999888
Q ss_pred hh--HHHHHHHhcceEEEecCCCHHHHHHHHHHhCCcEEEehHHHHHHHhcCc----cccCCCCceEEEEecCCCChhhh
Q 008636 245 WS--FTWGAAVVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSP----EAKQLDRPVRILTAGSPPPAPVL 318 (558)
Q Consensus 245 ~~--~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~----~~~~~~~l~~v~~~g~~l~~~~~ 318 (558)
+. .++.+++.|+++++.+..++..+++.++++++|++.++|+++..+++.. ....++++|.+++||+++++++.
T Consensus 240 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~ 319 (617)
T 3rg2_A 240 MSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLA 319 (617)
T ss_dssp HHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHH
T ss_pred hhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHH
Confidence 74 5889999999999999889999999999999999999999999987654 23367899999999999999999
Q ss_pred HHhh-hcCCeeeecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCCCCCeeeEEE
Q 008636 319 LRTE-SLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIV 397 (558)
Q Consensus 319 ~~~~-~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~ 397 (558)
+++. .+++++++.||+||++..+.... ........++|.|..+..+++|+|+ ++++++.| +.|||+
T Consensus 320 ~~~~~~~~~~~~~~YG~tE~~~~~~~~~----------~~~~~~~~~~G~p~~~~~~~~i~d~-~~~~~p~G--~~GEl~ 386 (617)
T 3rg2_A 320 ARIPAEIGCQLQQVFGMAEGLVNYTRLD----------DSAEKIIHTQGYPMCPDDEVWVADA-EGNPLPQG--EVGRLM 386 (617)
T ss_dssp HHHHHHTCSEEEEEEEETTEEEEECCTT----------SCHHHHHHCCCEESCTTCEEEEECT-TSCBCCTT--CCEEEE
T ss_pred HHHHHHhCCcEEEEeccCcceeecccCC----------CcccccccCCCccCCCCceEEEECC-CCCCCCCC--CceEEE
Confidence 9998 56999999999999875443321 1112234578988755559999997 78999988 889999
Q ss_pred EecccccccccCCchhhcccc-cCCceeeCceeEEccCCcEEEecccCCeeeeCceeechHHHHHHHhcCCCcceeEEEe
Q 008636 398 MRGGSLMLGYLKDPEATSKCM-KDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVG 476 (558)
Q Consensus 398 v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 476 (558)
|+|+++++||+++|+.+...| .++||+|||+|++++||.+++.||+||+||++|++|+|.+||+.|.++|+|.+++|++
T Consensus 387 i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~ 466 (617)
T 3rg2_A 387 TRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVS 466 (617)
T ss_dssp EECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEE
T ss_pred ecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEe
Confidence 999999999999999999999 6899999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCceeEEEEEecCCCCCCCCCCCHHHHHHHHHh-cCCCccccCeEEEecccCCCCCCcchhHHHHHHHhhc
Q 008636 477 RPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRA-RIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIANSM 551 (558)
Q Consensus 477 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~v~~~P~t~~GK~~r~~l~~~~~~~ 551 (558)
.+++..++.++++++..+. .+..++++++++ .|+.|++|..++++++||+|++||++|++|++++.+.
T Consensus 467 ~~~~~~~~~~~a~vv~~~~-------~~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~ 535 (617)
T 3rg2_A 467 MEDELMGEKSCAYLVVKEP-------LRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR 535 (617)
T ss_dssp EEETTTEEEEEEEEEESSC-------CCHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHH
T ss_pred ccCcccCeeEEEEEEeCCC-------CCHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhcc
Confidence 9999889999999998763 678899999998 6999999999999999999999999999999988654
No 19
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=4e-76 Score=626.97 Aligned_cols=515 Identities=22% Similarity=0.333 Sum_probs=424.1
Q ss_pred ChhhHHHHHhhcCCCCceEEE------CCccccHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCchhHHHHHHHHhhc
Q 008636 15 TPLGFIERAATACDDCPSIIY------NDTTYTWSQTYRRCLQLASSLS-SFGINPGHVVSVIAPNIPAMYELHFAVPMS 87 (558)
Q Consensus 15 tl~~~l~~~a~~~p~~~a~~~------~~~~~Ty~~l~~~v~~la~~L~-~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 87 (558)
++.++|+++++++|+++|+++ .++++||+||.+++.++|+.|+ ++|+++||+|+|+++|++++++++|||+++
T Consensus 83 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~ 162 (663)
T 1ry2_A 83 ACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRI 162 (663)
T ss_dssp HHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 577899999999999999998 2478999999999999999999 999999999999999999999999999999
Q ss_pred CcEEEeccccCChHHHHHHHhhcCccEEEEeCcCh---------HHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCC
Q 008636 88 GAIFNTINTRLDARTISIILKHSESKLVFVDHLSS---------SLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPP 158 (558)
Q Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (558)
|++++|+++.++.+++.+++++++++++|+++... ..+.+.....+ ....++++....... .
T Consensus 163 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~vi~~~~~~~~~------~ 233 (663)
T 1ry2_A 163 GAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETP---GVRHVLVYRKTNNPS------V 233 (663)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCT---TCCEEEEECSSCCSS------C
T ss_pred CCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCC---CCceEEEEecCCCCc------c
Confidence 99999999999999999999999999999987643 23333333222 234555554321100 0
Q ss_pred CCCCCCchhhHHHhhcCCCCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHh-cccccccCCCCEEEEec
Q 008636 159 RIPPADFVDTYENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVD-SLIDWVVPKQSVLLWTL 237 (558)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 237 (558)
.... .....|.++........ ...+..++++++|+|||||||.||||+++|+++...... ....+.+.++|++++..
T Consensus 234 ~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~ 311 (663)
T 1ry2_A 234 AFHA-PRDLDWATEKKKYKTYY-PCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAG 311 (663)
T ss_dssp CCCS-SSEEEHHHHHTTSCSCC-CCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECS
T ss_pred ccCC-CccccHHHHHhhcCCCC-CccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcC
Confidence 0000 11234666655432221 123356789999999999999999999999998765543 33457788999999999
Q ss_pred Cchhhhhh-hHHHHHHHhcceEEEecC----CCHHHHHHHHHHhCCcEEEehHHHHHHHhcCcc----ccCCCCceEEEE
Q 008636 238 PMFHNNGW-SFTWGAAVVGATNVCLRK----FDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPE----AKQLDRPVRILT 308 (558)
Q Consensus 238 p~~~~~g~-~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~----~~~~~~l~~v~~ 308 (558)
|++|..++ ..++.+++.|+++++.+. +++..+++.|+++++|+++++|++++.|.+... ...++++|.+++
T Consensus 312 ~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~ 391 (663)
T 1ry2_A 312 DIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGS 391 (663)
T ss_dssp CTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEE
T ss_pred CcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEE
Confidence 99999998 668899999999999874 589999999999999999999999999987652 346789999999
Q ss_pred ecCCCChhhhHHhhh-cC---CeeeecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCc
Q 008636 309 AGSPPPAPVLLRTES-LG---FIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGL 384 (558)
Q Consensus 309 ~g~~l~~~~~~~~~~-~~---~~v~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~ 384 (558)
+||++++++++++.+ ++ +++++.||+||+++.++.+.... ......+++|.|.+++ +++|+|+++|+
T Consensus 392 gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~--------~~~~~~gs~G~p~~g~-~v~i~d~~~g~ 462 (663)
T 1ry2_A 392 VGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGG--------VTPMKPGSASFPFFGI-DAVVLDPNTGE 462 (663)
T ss_dssp CSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTT--------CCCCCTTCCCEECTTC-CEEEECSSSTT
T ss_pred EcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCC--------CcccCCCccccCcCCC-eEEEEcCCCCC
Confidence 999999999999984 56 89999999999987766543100 0112346899999999 99999986788
Q ss_pred ccCC-CCCeeeEEEEec--ccccccccCCchhhcccc---cCCceeeCceeEEccCCcEEEecccCCeeeeCceeechHH
Q 008636 385 SVKR-DGQTRGEIVMRG--GSLMLGYLKDPEATSKCM---KDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTE 458 (558)
Q Consensus 385 ~~~~-~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ 458 (558)
+++. + +.|||+++| |+++.|||++++.+...| .+|||+|||+|++++||++++.||+||+||++|.+|+|.+
T Consensus 463 ~v~~~g--~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~e 540 (663)
T 1ry2_A 463 ELNTSH--AEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAE 540 (663)
T ss_dssp CEECSS--CEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHH
T ss_pred cCCCCC--cceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHH
Confidence 8877 5 789999999 589999999998887765 3799999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcceeEEEeeeCCCCCceeEEEEEecCCCC---C-C-CCCCCHHHHHHHHHhcCCCccccCeEEEecccCC
Q 008636 459 IESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTD---S-G-GMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPK 533 (558)
Q Consensus 459 iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---~-~-~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~ 533 (558)
||++|.++|+|.+++|++.+++..|+.++++|++.++.. . . +.....++|+++++++|++|++|+.|+++++||+
T Consensus 541 IE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~ 620 (663)
T 1ry2_A 541 IEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPK 620 (663)
T ss_dssp HHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCB
T ss_pred HHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCC
Confidence 999999999999999999999888999999999887642 1 1 0112367899999999999999999999999999
Q ss_pred CCCCcchhHHHHHHHhhc
Q 008636 534 TATGKVQKYVLGDIANSM 551 (558)
Q Consensus 534 t~~GK~~r~~l~~~~~~~ 551 (558)
|++||++|++|++++.+.
T Consensus 621 T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 621 TRSGKIMRRILRKILAGE 638 (663)
T ss_dssp CTTSCBCHHHHHHSCC--
T ss_pred CCccCchHHHHHHHHcCC
Confidence 999999999999998765
No 20
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=7.9e-77 Score=622.06 Aligned_cols=481 Identities=20% Similarity=0.244 Sum_probs=410.5
Q ss_pred CCChhhHHHHHhhcCCCCceEEECCccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCcEEE
Q 008636 13 PLTPLGFIERAATACDDCPSIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFN 92 (558)
Q Consensus 13 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v 92 (558)
..|+.++|+++++++|+++|+++.++++||+||.+++.++|++|+++|+++||+|+|+++|++++++++|||+++|++++
T Consensus 38 ~~~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v 117 (563)
T 1amu_A 38 DKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYV 117 (563)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred CCcHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChHHHHHHHhhcCccEEEEeCcChHHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCCCCCCCCchhhHHHh
Q 008636 93 TINTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPPADFVDTYENM 172 (558)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (558)
|++|.++.+++.+++++++++++|++.+....+.. .. ....+..+......
T Consensus 118 pl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~----~~---~~~~~~~~~~~~~~---------------------- 168 (563)
T 1amu_A 118 PIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN----IQ---FNGQVEIFEEDTIK---------------------- 168 (563)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTT----SC---CCSEEEECCCSTTT----------------------
T ss_pred EeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhh----cc---ccCceeeecchhhc----------------------
Confidence 99999999999999999999999998765443322 11 01122222111000
Q ss_pred hcCCCCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhcccccccCCCCEEEEecCchhhhhhhHHHHHH
Q 008636 173 LAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTWGAA 252 (558)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l 252 (558)
.. .......+..++++++|+|||||||.||+|.++|+++..........+++.++|++++..|++|..++..++.++
T Consensus 169 -~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 245 (563)
T 1amu_A 169 -IR--EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMAL 245 (563)
T ss_dssp -TS--CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHH
T ss_pred -cc--cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHH
Confidence 00 000111234578999999999999999999999999988777777778889999999999999999988888999
Q ss_pred HhcceEEEecC---CCHHHHHHHHHHhCCcEEEehHHHHHHHhcCccccCCCCceEEEEecCCCChhhhHHhhhcCCeee
Q 008636 253 VVGATNVCLRK---FDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQLDRPVRILTAGSPPPAPVLLRTESLGFIVS 329 (558)
Q Consensus 253 ~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~l~~v~~~g~~l~~~~~~~~~~~~~~v~ 329 (558)
+.|+++++.+. .++..+++.++++++|++.++|+++..+.. ..++++|.+++||+++++++.+.+.+. ++++
T Consensus 246 ~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~----~~~~~lr~~~~gG~~l~~~~~~~~~~~-~~~~ 320 (563)
T 1amu_A 246 LTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP----ERILSIQTLITAGSATSPSLVNKWKEK-VTYI 320 (563)
T ss_dssp TTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT----TTCCSCSEEEEESSCCCHHHHHHHTTT-SEEE
T ss_pred HCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh----cccccccEEEEEEecCCHHHHHHHHhC-CeEE
Confidence 99999999875 689999999999999999999999988754 346789999999999999999998864 8999
Q ss_pred ecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCCCCCeeeEEEEecccccccccC
Q 008636 330 HGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLK 409 (558)
Q Consensus 330 ~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~ 409 (558)
+.||+||++.+++.+..... ......++|.|.+++ +++|+|+ ++.+++.| +.|||+|+|++++.|||+
T Consensus 321 ~~YG~TE~~~~~~~~~~~~~--------~~~~~~~vG~p~~~~-~v~i~d~-~~~~~~~g--~~GEl~v~g~~v~~GY~~ 388 (563)
T 1amu_A 321 NAYGPTETTICATTWVATKE--------TIGHSVPIGAPIQNT-QIYIVDE-NLQLKSVG--EAGELCIGGEGLARGYWK 388 (563)
T ss_dssp EEECCGGGSSCSEEEECCSS--------CCCSSCCCBEECTTE-EEEEECT-TSCBCCTT--CEEEEEEEETTCCCEETT
T ss_pred EEECcCHHhHhheeeecccc--------cCCCCCcccceeCCC-EEEEECC-CcCCCCCC--CcEEEEEechhhChhhCC
Confidence 99999999877665432111 011235789999998 9999997 78888888 889999999999999999
Q ss_pred Cchhhccccc-------CCceeeCceeEEccCCcEEEecccCCeeeeCceeechHHHHHHHhcCCCcceeEEEeeeCCCC
Q 008636 410 DPEATSKCMK-------DGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFW 482 (558)
Q Consensus 410 ~~~~~~~~~~-------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 482 (558)
+|+.+...|. ++||+|||+|++|+||++++.||+||+||++|++|+|.+||+.|.++|+|.+++|++.+++..
T Consensus 389 ~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~ 468 (563)
T 1amu_A 389 RPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQE 468 (563)
T ss_dssp CHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTS
T ss_pred CchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCC
Confidence 9999988873 359999999999999999999999999999999999999999999999999999999999888
Q ss_pred CceeEEEEEecCCCCCCCCCCCHHHHHHHHHhcCCCccccCeEEEecccCCCCCCcchhHHHHHHHh
Q 008636 483 QEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIAN 549 (558)
Q Consensus 483 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GK~~r~~l~~~~~ 549 (558)
++.++++++.... .+.++|+++++++|+.|++|+.++++++||+|++||++|++|++...
T Consensus 469 ~~~~~a~vv~~~~-------~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 528 (563)
T 1amu_A 469 QPYLCAYFVSEKH-------IPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDL 528 (563)
T ss_dssp CEEEEEEEEESSC-------CCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCCC
T ss_pred CeEEEEEEEeCCC-------CCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCccc
Confidence 9999999987543 67889999999999999999999999999999999999999987653
No 21
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=3.9e-77 Score=626.78 Aligned_cols=484 Identities=22% Similarity=0.302 Sum_probs=320.6
Q ss_pred CCCChhhHHHHHhhcCCCCceEEECCccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCcEE
Q 008636 12 CPLTPLGFIERAATACDDCPSIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIF 91 (558)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 91 (558)
...++.++|+++++++|+++|+++.++++||+||.+++.++|++|+++|+++||+|+|+++|++++++++|||+++|+++
T Consensus 73 ~~~~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 152 (570)
T 4gr5_A 73 AGACVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGY 152 (570)
T ss_dssp CSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred ccCCHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccCChHHHHHHHhhcCccEEEEeCcChHHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCCCCCCCCchhhHHH
Q 008636 92 NTINTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPPADFVDTYEN 171 (558)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (558)
+|++|.++.+++.+++++++++++|++.+....+. ....+...+...
T Consensus 153 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~~~---------------------- 199 (570)
T 4gr5_A 153 TMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLT-----------GTTTLYVEDEAA---------------------- 199 (570)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSC-----------SSEEEECCC-------------------------
T ss_pred EEcCCCChHHHHHHHHHhcCCCEEEecchhhhccc-----------CCcceeeecccc----------------------
Confidence 99999999999999999999999999875432110 111111111000
Q ss_pred hhcCCCCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhcccccccCCCCEEEEecCchhhhhhhHHHHH
Q 008636 172 MLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTWGA 251 (558)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~ 251 (558)
.............++++++|+|||||||.||+|.++|+++...... ...+++.+++++++..|++|..+...++.+
T Consensus 200 ---~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~ 275 (570)
T 4gr5_A 200 ---SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGA 275 (570)
T ss_dssp -------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHH
T ss_pred ---ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHH
Confidence 0000011112356789999999999999999999999998765544 455678899999999999988777788899
Q ss_pred HHhcceEEEec--CCCHHHHHHHHHHhCCcEEEehHHHHHHHhcCccccCCCCceEEEEecCCCChhhhHHhhh-c-CCe
Q 008636 252 AVVGATNVCLR--KFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQLDRPVRILTAGSPPPAPVLLRTES-L-GFI 327 (558)
Q Consensus 252 l~~g~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~l~~v~~~g~~l~~~~~~~~~~-~-~~~ 327 (558)
++.|+++++.+ .+++..+++.++++++|++.++|+++..|++.. ...++++|.+++||++++....+++.+ + +++
T Consensus 276 l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~ 354 (570)
T 4gr5_A 276 LLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEV-PEAFEGVRYAITGGEPASVPHVAKARRDHPALR 354 (570)
T ss_dssp HTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC-GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCE
T ss_pred HhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhc-hhhCCCceEEEEecccCCHHHHHHHHHhCCCcE
Confidence 99999999987 468999999999999999999999999998764 345789999999999999998888874 4 899
Q ss_pred eeecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCCCCCeeeEEEEecccccccc
Q 008636 328 VSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGY 407 (558)
Q Consensus 328 v~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy 407 (558)
+++.||+||++++++.+.... ........++|.|.+++ +++|+|+ ++.+++.| +.|||+|+|++++.||
T Consensus 355 l~~~YG~TE~~~~~~~~~~~~-------~~~~~~~~~iG~p~~~~-~v~i~d~-~~~~~~~G--~~GEl~v~g~~v~~GY 423 (570)
T 4gr5_A 355 LGNGYGPAESMGFTTHHAVVA-------GDLSGTALPIGVPLAGK-RAYVLDD-DLKPAANG--ALGELYVAGAGLAHGY 423 (570)
T ss_dssp EEEEECCGGGCSCSEEEECCG-------GGTTSSSCCCBEECTTE-EEEEECT-TSCBCCTT--CEEEEEEEETTCCCEE
T ss_pred EEEeechhhheeeeeeeeecc-------cccCCCccccceeeCCC-EEEEECC-CCCCCCCC--CcEEEEEeecccchhc
Confidence 999999999988766543211 11122335689999998 9999997 68899888 8999999999999999
Q ss_pred cCCchhhccccc---------CCceeeCceeEEccCCcEEEecccCCeeeeCceeechHHHHHHHhcCCCcceeEEEeee
Q 008636 408 LKDPEATSKCMK---------DGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRP 478 (558)
Q Consensus 408 ~~~~~~~~~~~~---------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 478 (558)
|++|+.+...|. +|||+|||+|++|+||++++.||+||+||++|++|+|.+||+.|.++|+|.+++|++.+
T Consensus 424 ~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~ 503 (570)
T 4gr5_A 424 VSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQD 503 (570)
T ss_dssp TTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC------------------------------------
T ss_pred CCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEee
Confidence 999999988873 26999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEecCCCCCCCCCCCHHHHHHHHHhcCCCccccCeEEEecccCCCCCCcchhHHHHHHH
Q 008636 479 DPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIA 548 (558)
Q Consensus 479 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GK~~r~~l~~~~ 548 (558)
++..++.++++|+..++... .+.++|+++++++|+.|++|+.++++++||+|++||++|++|++..
T Consensus 504 ~~~~~~~~~a~vv~~~~~~~----~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~g 569 (570)
T 4gr5_A 504 SRLGDKQLVAYVVAERADAP----PDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGSG 569 (570)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CCCCCeEEEEEEEecCCCCC----cCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhccC
Confidence 98888999999987654321 5678899999999999999999999999999999999999998753
No 22
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=4.4e-75 Score=606.74 Aligned_cols=497 Identities=22% Similarity=0.276 Sum_probs=410.4
Q ss_pred ChhhHHHHHhhcCCCCceEEECCccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCcEEEec
Q 008636 15 TPLGFIERAATACDDCPSIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTI 94 (558)
Q Consensus 15 tl~~~l~~~a~~~p~~~a~~~~~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l 94 (558)
++.++|+++++ +|+++|+++.++++||+||.+++.++|++|+++|+++||+|+|+++|++++++++|||+++|++++|+
T Consensus 25 ~~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl 103 (529)
T 2v7b_A 25 FAAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVA 103 (529)
T ss_dssp HHHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEec
Confidence 38889999999 99999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChHHHHHHHhhcCccEEEEeCcChHHHHHHhhcCCCCCCC-CcEEEEcCCccccCCCCCCCCCCCCCchhhHHHhh
Q 008636 95 NTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKT-PKLVLITDDKEISSSSSPPPRIPPADFVDTYENML 173 (558)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (558)
++.++.+++.+++++++++++|++.+....+.+....... . ..++..+..... ......+.++.
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~------------~~~~~~~~~~~ 168 (529)
T 2v7b_A 104 NTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEH---DGCQLIVSQPRESE------------PRLAPLFEELI 168 (529)
T ss_dssp CTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC------CCEEEEECC------------------CCCBHHHHH
T ss_pred CcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccc---cCceEEEecccccc------------cccccchhhhh
Confidence 9999999999999999999999998877666655443221 2 333333221100 00012355554
Q ss_pred cCCCCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHH-HHHHHhcccccccCCCCEEEEecCchhhhhhh-HHHHH
Q 008636 174 AKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAF-FIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWS-FTWGA 251 (558)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~-~~~~~ 251 (558)
....... ......++++++|+|||||||.||+|.++|+++ ..........+++.+++++++..|++|..++. .++.+
T Consensus 169 ~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 247 (529)
T 2v7b_A 169 DAAAPAA-KAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFP 247 (529)
T ss_dssp HTSCCCS-SCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHH
T ss_pred ccCCCcc-cccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHH
Confidence 4322221 122356789999999999999999999999999 56555666667889999999999999999985 46788
Q ss_pred HHhcceEEEe-cCCCHHHHHHHHHHhCCcEEEehHHHHHHHhcCccccC--CCCceEEEEecCCCChhhhHHhhh-cCCe
Q 008636 252 AVVGATNVCL-RKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQ--LDRPVRILTAGSPPPAPVLLRTES-LGFI 327 (558)
Q Consensus 252 l~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~--~~~l~~v~~~g~~l~~~~~~~~~~-~~~~ 327 (558)
+..|+++++. +.+++..+++.++++++|++.++|+++..+++...... ..++|.+++||+++++++.+++.+ ++++
T Consensus 248 l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~ 327 (529)
T 2v7b_A 248 LSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGCE 327 (529)
T ss_dssp HHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHHSCC
T ss_pred HhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHhCCc
Confidence 9999999987 56899999999999999999999999999987652211 348999999999999999999985 6999
Q ss_pred eeecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCCCCCeeeEEEEecccccccc
Q 008636 328 VSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGY 407 (558)
Q Consensus 328 v~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy 407 (558)
+++.||+||++++++.+.... ....++|.|.+++ +++|+|+ ++++++.| +.|||+|+|++++.||
T Consensus 328 i~~~YG~TE~~~~~~~~~~~~-----------~~~~~~G~p~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~~~~gY 392 (529)
T 2v7b_A 328 ILDGIGSTEMLHIFLSNRAGA-----------VEYGTTGRPVPGY-EIELRDE-AGHAVPDG--EVGDLYIKGPSAAVMY 392 (529)
T ss_dssp EEEEEECTTTSSEEEECCTTC-----------CCTTSCCEECTTC-EEEEECT-TSCBCCTT--SCEEEEEECTTCCCCB
T ss_pred eeeeEchhhcCceeeccccCC-----------CccCCcccCCCCC-EEEEECC-CCCCCCCC--CccEEEEecCCccccc
Confidence 999999999977665542111 2345789999998 9999996 78899888 8899999999999999
Q ss_pred cCCchhhcccccCCceeeCceeEEccCCcEEEecccCCeeeeCceeechHHHHHHHhcCCCcceeEEEeeeCCCCCceeE
Q 008636 408 LKDPEATSKCMKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPC 487 (558)
Q Consensus 408 ~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 487 (558)
|++++.+...|.+|||+|||+|++++||.+++.||+||+||++|++|+|.+||+.|.++|+|.+++|++. ++..++.++
T Consensus 393 ~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~ 471 (529)
T 2v7b_A 393 WNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTR 471 (529)
T ss_dssp TTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEE
T ss_pred CCChHHHHHhhhcCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 666678899
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHHHhcCCCccccCeEEEecccCCCCCCcchhHHHHH
Q 008636 488 AFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGD 546 (558)
Q Consensus 488 ~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GK~~r~~l~~ 546 (558)
+++++.++.... ....++++++++++|+.|++|+.++++++||+|++||++|++|++
T Consensus 472 a~vv~~~~~~~~--~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 472 AFVVLKREFAPS--EILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp EEEEECTTCCCC--HHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred EEEEecCCCCcc--hhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 999987653210 013468999999999999999999999999999999999999986
No 23
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=8.5e-76 Score=611.29 Aligned_cols=500 Identities=20% Similarity=0.222 Sum_probs=406.8
Q ss_pred CCChhhHHHHHhhcCCCCceEEECCccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCcEEE
Q 008636 13 PLTPLGFIERAATACDDCPSIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFN 92 (558)
Q Consensus 13 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v 92 (558)
.+|+.++|+++++++|+++|+.+.++++||+||.+++.++|++|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v 82 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYI 82 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChHHHHHHHhhcCccEEEEeCcChHHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCCCCCCCCchhhHHHh
Q 008636 93 TINTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPPADFVDTYENM 172 (558)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (558)
|+++.++.+++.++++.++++++|++++....+ ....+.. ...+...
T Consensus 83 pl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~-----------~~~~~~~----------------------~~~~~~~ 129 (521)
T 3l8c_A 83 PVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI-----------EGISLVS----------------------LSEIESA 129 (521)
T ss_dssp EEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC-----------TTSEEEE----------------------HHHHHHH
T ss_pred ecCccccHHHHHHHHHhCCCCEEEecCcccccc-----------ccCcccc----------------------hhhhhhc
Confidence 999999999999999999999999987532110 0001111 1111111
Q ss_pred hcCCCCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhcccc--cccCCCCEEEEecCchhhhhhhHHHH
Q 008636 173 LAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLID--WVVPKQSVLLWTLPMFHNNGWSFTWG 250 (558)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~g~~~~~~ 250 (558)
..... .........++++++|+|||||||.||+|.++|+++.....+.... +.....++++...|++|..++..++.
T Consensus 130 ~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 208 (521)
T 3l8c_A 130 KLAEM-PYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAP 208 (521)
T ss_dssp HHHTC-CCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHH
T ss_pred ccccC-CcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHH
Confidence 11111 1111233567899999999999999999999999998766655444 67788999999999999999888889
Q ss_pred HHHhcceEEEecC---CCHHHHHHHHHHhCCcEEEehHHHHHHHhcCc--cccCCCCceEEEEecCCCChhhhHHhhh-c
Q 008636 251 AAVVGATNVCLRK---FDAPTVFALIRKHGVTHMCGAPIVLNLLSSSP--EAKQLDRPVRILTAGSPPPAPVLLRTES-L 324 (558)
Q Consensus 251 ~l~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~--~~~~~~~l~~v~~~g~~l~~~~~~~~~~-~ 324 (558)
++..|+++++.+. .++..+++.+.++++|++.++|+++..+.... ....++++|.+++||+++++++.+++.+ +
T Consensus 209 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~ 288 (521)
T 3l8c_A 209 TLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERF 288 (521)
T ss_dssp HHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHC
T ss_pred HHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHC
Confidence 9999999999875 38999999999999999999999999988765 3456789999999999999999999884 4
Q ss_pred -CCeeeecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCCCCCeeeEEEEecccc
Q 008636 325 -GFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSL 403 (558)
Q Consensus 325 -~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~ 403 (558)
++++++.||+||++++++.+.... .........++|.|.+++ +++|+|+ ++.+++.| +.|||+|+|+++
T Consensus 289 ~~~~i~~~YG~TE~~~~~~~~~~~~------~~~~~~~~~~vG~p~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~v 358 (521)
T 3l8c_A 289 PSAKIINAYGPTEATVALSAIEITR------EMVDNYTRLPIGYPKPDS-PTYIIDE-DGKELSSG--EQGEIIVTGPAV 358 (521)
T ss_dssp TTCEEEEEECCGGGSSCSEEEEECH------HHHHHCSSCEEEEECTTS-CEEEECT-TSCBCCTT--CCEEEEEESTTS
T ss_pred CCceEEeCcCccHHhhhhceeeccc------ccccCCCccccccccCCC-EEEEECC-CcCCCCCC--CceEEEeccccc
Confidence 899999999999988766543211 111222345789999998 9999997 78899888 789999999999
Q ss_pred cccccCCchhhcccc----cCCceeeCceeEEccCCcEEEecccCCeeeeCceeechHHHHHHHhcCCCcceeEEEeeeC
Q 008636 404 MLGYLKDPEATSKCM----KDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPD 479 (558)
Q Consensus 404 ~~gy~~~~~~~~~~~----~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 479 (558)
+.|||++|+.+.+.| .+|||+|||+|++|+||++++.||+||+||++|++|+|.+||+.|.++|+|.+++|++..+
T Consensus 359 ~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~ 438 (521)
T 3l8c_A 359 SKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYN 438 (521)
T ss_dssp CSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCS
T ss_pred ChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeec
Confidence 999999999998887 3579999999999999999999999999999999999999999999999999999998875
Q ss_pred CC-CCceeEEEEEecCCCCCCC--CCCCHHHHHHHHHhcCCCccccCeEEEecccCCCCCCcchhHHHHHHHhhcccccC
Q 008636 480 PF-WQEIPCAFVSLKTGTDSGG--MMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIANSMSMSHS 556 (558)
Q Consensus 480 ~~-~~~~~~~~v~~~~~~~~~~--~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GK~~r~~l~~~~~~~~~~~~ 556 (558)
+. .++.++++|++.++..... .....++++++++++|+.|++|+.++++++||+|++||++|++|++.+.+...+..
T Consensus 439 ~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~~~~ 518 (521)
T 3l8c_A 439 KEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNREGHHH 518 (521)
T ss_dssp SSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC-------
T ss_pred CCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCCcccc
Confidence 43 4678999999887643110 00125789999999999999999999999999999999999999999988766543
No 24
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=6.4e-76 Score=619.99 Aligned_cols=480 Identities=19% Similarity=0.190 Sum_probs=397.3
Q ss_pred CCCCChhhHHHHHhhcCCCCceEEECCccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCcE
Q 008636 11 SCPLTPLGFIERAATACDDCPSIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAI 90 (558)
Q Consensus 11 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 90 (558)
....|+.++|+++++++|+++|+++.++++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++|++
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~ 103 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHH 103 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCE
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccCChHHHHHHHhhcCccEEEEeCcChHHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCCCCCCCCchhhHH
Q 008636 91 FNTINTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPPADFVDTYE 170 (558)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (558)
++|++|.++.+++.++++++++++++++....... .... .......
T Consensus 104 ~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~----------~~~~-~~~~~~~----------------------- 149 (620)
T 4dg8_A 104 YLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA----------NGLP-CVPVRHL----------------------- 149 (620)
T ss_dssp EEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC----------TTSC-EEEGGGC-----------------------
T ss_pred EEeeCccChHHHHHHHHHhCCCcEEEecCcccccc----------cCCc-eeeeccC-----------------------
Confidence 99999999999999999999999999765422100 0011 1110000
Q ss_pred HhhcCCCCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhcccccccCCCCEEEEecCchhhhhhhHHHH
Q 008636 171 NMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTWG 250 (558)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~ 250 (558)
.............++++++|+|||||||.||||.++|+++...... ...+.+.+++++++..|++|..++..++.
T Consensus 150 ----~~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 224 (620)
T 4dg8_A 150 ----PAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWG 224 (620)
T ss_dssp ----CCCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHH
T ss_pred ----CcCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHH
Confidence 0000011112245789999999999999999999999998766544 45677889999999999999999988999
Q ss_pred HHHhcceEEEec--CCCHHHHHHHHHHhCCcEEEehHHHHHHHhcCccccCCCCceEEEEecCCCChhhhHHhh-hc-CC
Q 008636 251 AAVVGATNVCLR--KFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQLDRPVRILTAGSPPPAPVLLRTE-SL-GF 326 (558)
Q Consensus 251 ~l~~g~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~l~~v~~~g~~l~~~~~~~~~-~~-~~ 326 (558)
+++.|+++++.+ .+++..+++.++++++|++.++|+++..|.+.. ...++++|.+++|||+++.+..+++. .+ ++
T Consensus 225 ~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~-~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~ 303 (620)
T 4dg8_A 225 ALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD-PDCLGGLRQLLTGGDILSVPHVRRALLRHPRL 303 (620)
T ss_dssp HHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC-GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTC
T ss_pred HHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC-hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCe
Confidence 999999999865 579999999999999999999999999997643 45678999999999999988888876 33 89
Q ss_pred eeeecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCCCCCeeeEEEEeccccccc
Q 008636 327 IVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLG 406 (558)
Q Consensus 327 ~v~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~g 406 (558)
++++.||+||++.+++.+... .........++|.|.+++ +++|+|++....++.| +.|||+|+|+++++|
T Consensus 304 ~l~n~YG~TE~~~~~~~~~~~-------~~~~~~~~~~iG~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~i~G~~v~~G 373 (620)
T 4dg8_A 304 HLVNGYGPTENTTFTCCHVVT-------DDDLEEDDIPIGKAIAGT-AVLLLDEHGQEIAEPD--RAGEIVAFGAGLAQG 373 (620)
T ss_dssp EEEEEECCGGGCSCSEEEECC-------TGGGGSSSCCCBEECTTE-EEEEECTTSCBCCSSS--CCEEEEEEETTCCSE
T ss_pred EEEeeEchhhhhhheEEEecc-------ccccCCCCCCceecccCc-EEEEECccCCCCCCCC--CceEEEEeccccccc
Confidence 999999999998876654321 112223446899999998 9999998444336777 789999999999999
Q ss_pred ccCCchhhcccccC--------CceeeCceeEEccCCcEEEecccCCeeeeCceeechHHHHHHHhcCCCcceeEEEeee
Q 008636 407 YLKDPEATSKCMKD--------GRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRP 478 (558)
Q Consensus 407 y~~~~~~~~~~~~~--------g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 478 (558)
|+++|+.+.+.|.+ +||+|||+|++++||.+++.||+||+||++|++|+|.+||+.|.++|+|.+++|++.+
T Consensus 374 Y~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~ 453 (620)
T 4dg8_A 374 YRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRE 453 (620)
T ss_dssp ETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEE
T ss_pred cCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEe
Confidence 99999999998843 7999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCceeEEEEEecCCCCCCCCCCCHHHHHHHHHhcCCCccccCeEEEecccCCCCCCcchhHHHHHHHhhcc
Q 008636 479 DPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIANSMS 552 (558)
Q Consensus 479 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GK~~r~~l~~~~~~~~ 552 (558)
++..+..+++ ++.... .+.+.+.++|+.|++|+.++++++||+|++||++|++|++.+.+..
T Consensus 454 ~~~~~~lv~~-~~~~~~-----------~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~~ 515 (620)
T 4dg8_A 454 RNGVKQLLCA-WTGKAD-----------ASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEPL 515 (620)
T ss_dssp ETTEEEEEEE-EEECTT-----------CCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSCC
T ss_pred CCCceEEEEE-EecChH-----------HHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhcccccc
Confidence 8754444444 433221 1334566789999999999999999999999999999999886543
No 25
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1.4e-75 Score=651.89 Aligned_cols=514 Identities=26% Similarity=0.347 Sum_probs=341.9
Q ss_pred CCCChhhHHHHHhhcCCCCceEEEC--CccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCc
Q 008636 12 CPLTPLGFIERAATACDDCPSIIYN--DTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGA 89 (558)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~~~a~~~~--~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 89 (558)
..+|+.++|+++++++|+++|+++. ++++||+||.+++.++|++|+++|+++||+|+|+++|++++++++|||+++|+
T Consensus 59 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga 138 (979)
T 3tsy_A 59 NHLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGA 138 (979)
T ss_dssp TTSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCC
Confidence 3589999999999999999999996 68999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccCChHHHHHHHhhcCccEEEEeCcChHHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCCCCCCCCchhhH
Q 008636 90 IFNTINTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPPADFVDTY 169 (558)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (558)
+++|++|.++.+++.+++++++++++|++.+....+....... ...++.++..... ........+
T Consensus 139 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~----------~~~~~~~~~ 203 (979)
T 3tsy_A 139 TATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-----GVVIVCIDDNESV----------PIPEGCLRF 203 (979)
T ss_dssp EEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-----CCEEEECCCCTTS----------CCCTTEEEG
T ss_pred EEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-----CceEEEeCCcccc----------cCCcccccH
Confidence 9999999999999999999999999999988776666554432 1233333322110 000112333
Q ss_pred HHhhcCCCCC--CCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhccc----ccccCCCCEEEEecCchhhh
Q 008636 170 ENMLAKGDPQ--FSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLI----DWVVPKQSVLLWTLPMFHNN 243 (558)
Q Consensus 170 ~~~~~~~~~~--~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~ 243 (558)
.++....... ........++++++|+|||||||.||+|.++|+++......... .+.+.+++++++.+|++|..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~ 283 (979)
T 3tsy_A 204 TELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIY 283 (979)
T ss_dssp GGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHH
T ss_pred HHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHH
Confidence 3433322211 11122457899999999999999999999999999877655432 45678899999999999999
Q ss_pred hh-hHHHHHHHhcceEEEecCCCHHHHHHHHHHhCCcEEEehHHHHHHHhcCc--cccCCCCceEEEEecCCCChhhhHH
Q 008636 244 GW-SFTWGAAVVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSP--EAKQLDRPVRILTAGSPPPAPVLLR 320 (558)
Q Consensus 244 g~-~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~--~~~~~~~l~~v~~~g~~l~~~~~~~ 320 (558)
++ ..++.++..|+++++.+.+++..+++.++++++|++.++|+++..|.+.. ....++++|.+++||+++++++.++
T Consensus 284 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~ 363 (979)
T 3tsy_A 284 ALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDA 363 (979)
T ss_dssp HHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHH
T ss_pred HHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHH
Confidence 98 45788899999999999999999999999999999999999999998876 3445789999999999999999999
Q ss_pred hhh-c-CCeeeecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCCCCCeeeEEEE
Q 008636 321 TES-L-GFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVM 398 (558)
Q Consensus 321 ~~~-~-~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v 398 (558)
+.+ + ++++++.||+||++.+++.+..... .......+++|.|.+++ +++|+|++++++++.+ +.|||+|
T Consensus 364 ~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~i 434 (979)
T 3tsy_A 364 VNAKFPNAKLGQGYGMTEAGPVLAMSLGFAK------EPFPVKSGACGTVVRNA-EMKIVDPDTGDSLSRN--QPGEICI 434 (979)
T ss_dssp HHHHCTTCEEEECEECGGGCSEEEECGGGSS------SCCCCCTTCCCEECSSC-EEEEECTTSCCBCCTT--CCEEEEE
T ss_pred HHHHCCCCeEEeeechhhhhHHHHhCCCCCC------CccccCCCCcCcccCCc-EEEEEeCCCCCCCCCC--CccEEEE
Confidence 984 5 8999999999999987665431111 11122346789999998 9999998889999998 7899999
Q ss_pred ecccccccccCCchhhcccc-cCCceeeCceeEEccCCcEEEecccCCeeeeCceeechHHHHHHHhcCCCcceeEEEee
Q 008636 399 RGGSLMLGYLKDPEATSKCM-KDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGR 477 (558)
Q Consensus 399 ~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 477 (558)
+|+++++|||++|+.+.+.| .+|||+|||+|++++||.+++.||+||+||++|++|+|.+||+.|.++|+|.+++|++.
T Consensus 435 ~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~ 514 (979)
T 3tsy_A 435 RGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAM 514 (979)
T ss_dssp ESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC--------------------------------
T ss_pred ECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEe
Confidence 99999999999999999988 68999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCceeEEEEEecCCCCCCCCCCCHHHHHHHHHhcCCCccccCeEEEecccCCCCCCcchhHHHHHHHhhcccc
Q 008636 478 PDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIANSMSMS 554 (558)
Q Consensus 478 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GK~~r~~l~~~~~~~~~~ 554 (558)
+++..++.++++|+..++.. .+.++++++++++|+.|++|+.++++++||+|++||++|++|++++.+...+
T Consensus 515 ~~~~~g~~~~a~vv~~~~~~-----~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~ 586 (979)
T 3tsy_A 515 KEEAAGEVPVAFVVKSKDSE-----LSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGLGS 586 (979)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred cccCCCcEEEEEEEECCCCC-----CCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhcCC
Confidence 99888999999998876654 6778899999999999999999999999999999999999999999876544
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=1.4e-74 Score=597.83 Aligned_cols=475 Identities=26% Similarity=0.338 Sum_probs=386.1
Q ss_pred CCCCChhhHHHHHhhcCCC-CceEEECCccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCc
Q 008636 11 SCPLTPLGFIERAATACDD-CPSIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGA 89 (558)
Q Consensus 11 ~~~~tl~~~l~~~a~~~p~-~~a~~~~~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 89 (558)
..-+|+.+.|.++++++|+ ++|+++.++++||+||.+++.++|.+|. .|++|+++++|++++++++|||+++|+
T Consensus 19 ~~~~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga 93 (505)
T 3nyq_A 19 SHMSSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGV 93 (505)
T ss_dssp -----CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTC
T ss_pred cccchhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence 3346899999999999987 9999999999999999999999998875 388999999999999999999999999
Q ss_pred EEEeccccCChHHHHHHHhhcCccEEEEeCcChHHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCCCCCCCCchhhH
Q 008636 90 IFNTINTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPPADFVDTY 169 (558)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (558)
+++|++|.++.+++.+++++++++++|++.+.... ... .....+.+....
T Consensus 94 ~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~--~~~-------~~~~~~~~~~~~--------------------- 143 (505)
T 3nyq_A 94 AAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELP--PAL-------GALERVDVDVRA--------------------- 143 (505)
T ss_dssp CEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC--GGG-------TTSEEEECCTTC---------------------
T ss_pred EEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccc--hhh-------cccccccccccc---------------------
Confidence 99999999999999999999999999997642100 000 001111111000
Q ss_pred HHhhcCCCCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhcccccccCCCCEEEEecCchhhhhhh-HH
Q 008636 170 ENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWS-FT 248 (558)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~-~~ 248 (558)
..........++++++|+|||||||.||+|.++|+++..........+++.++|++++.+|++|..|+. .+
T Consensus 144 --------~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~ 215 (505)
T 3nyq_A 144 --------RGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGI 215 (505)
T ss_dssp --------CCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTT
T ss_pred --------ccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHH
Confidence 000111235678999999999999999999999999998888888888999999999999999999884 68
Q ss_pred HHHHHhcceEEEecCCCHHHHHHHHHHhCCcEEEehHHHHHHHhcCc-----cccCCCCceEEEEecCCCChhhhHHhh-
Q 008636 249 WGAAVVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSP-----EAKQLDRPVRILTAGSPPPAPVLLRTE- 322 (558)
Q Consensus 249 ~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~-----~~~~~~~l~~v~~~g~~l~~~~~~~~~- 322 (558)
+.++..|+++++.+.+++..+++.+ ++++|+++++|+++..+++.. ....++++|.+++||+++++++.+++.
T Consensus 216 ~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~ 294 (505)
T 3nyq_A 216 LGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAA 294 (505)
T ss_dssp HHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHH
T ss_pred HHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHH
Confidence 8999999999999999999999999 889999999999999998743 223466889999999999999999998
Q ss_pred hcCCeeeecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCC-CCCeeeEEEEecc
Q 008636 323 SLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKR-DGQTRGEIVMRGG 401 (558)
Q Consensus 323 ~~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~-~~~~~Gel~v~~~ 401 (558)
.+++++++.||+||++..+..+... .....++|.|.+++ +++|+|+ ++.+++. .+++.|||+|+|+
T Consensus 295 ~~~~~~~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~~~~-~~~i~d~-~g~~~~~~~~g~~GEl~v~g~ 361 (505)
T 3nyq_A 295 ATGRRVIERYGMTETLMNTSVRADG-----------EPRAGTVGVPLPGV-ELRLVEE-DGTPIAALDGESVGEIQVRGP 361 (505)
T ss_dssp HHSCCCEEEEEETTTEEEEECCTTS-----------CCCTTCCCEECTTC-EEEEC------CCCCCCSCCCEEEEEEST
T ss_pred hcCCeeecccchhhcccccccCCCC-----------CCCCCCcccCCCCC-EEEEECC-CCCCcccCCCCceEEEEEecC
Confidence 4599999999999998765543211 12345789999998 9999998 6777765 2237899999999
Q ss_pred cccccccCCchhhcccc-cCCceeeCceeEEccCCcEEEeccc-CCeeeeCceeechHHHHHHHhcCCCcceeEEEeeeC
Q 008636 402 SLMLGYLKDPEATSKCM-KDGRYYTGDVGMMHPDGYLEIKDRS-KDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPD 479 (558)
Q Consensus 402 ~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~-~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 479 (558)
+++.|||++|+.+...| .+|||+|||+|++++||.+++.||+ ||+||++|++|+|.+||+.|.++|+|.+++|++.++
T Consensus 362 ~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~ 441 (505)
T 3nyq_A 362 NLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPD 441 (505)
T ss_dssp TSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEE
T ss_pred chhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeEC
Confidence 99999999999999999 5899999999999999999999997 589999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEecCCCCCCCCCCCHHHHHHHHHhcCCCccccCeEEEecccCCCCCCcchhHHHHH
Q 008636 480 PFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGD 546 (558)
Q Consensus 480 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GK~~r~~l~~ 546 (558)
+..++.++++|++.++... .+.++++++++++|+.|++|+.++++++||+|++||++|++|++
T Consensus 442 ~~~g~~l~a~vv~~~~~~~----~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 442 PDLGERIVAWIVPADPAAP----PALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp TTTEEEEEEEEEESSTTSC----CCHHHHHHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred CCCCcEEEEEEEECCCCCC----CCHHHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 9999999999998764221 67889999999999999999999999999999999999999986
No 27
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=7.1e-73 Score=594.50 Aligned_cols=500 Identities=18% Similarity=0.209 Sum_probs=315.0
Q ss_pred CCCCCCChhhHHHHHhhcCCCCceEEECC----------ccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHH
Q 008636 9 ANSCPLTPLGFIERAATACDDCPSIIYND----------TTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMY 78 (558)
Q Consensus 9 ~~~~~~tl~~~l~~~a~~~p~~~a~~~~~----------~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~ 78 (558)
.....+|+.++|+++++++|+++|+++.+ +++||+||.+++.++|++|.+.|+ +||+|+|+++|+++++
T Consensus 15 ~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~ 93 (562)
T 3ite_A 15 QYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAF 93 (562)
T ss_dssp ---CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHH
T ss_pred eecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHH
Confidence 34567899999999999999999998743 789999999999999999999999 7999999999999999
Q ss_pred HHHHHHhhcCcEEEeccccCChHHHHHHHhhcCccEEEEeCcChHHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCC
Q 008636 79 ELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPP 158 (558)
Q Consensus 79 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (558)
+++|||+++|++++|+++.++.+++.+++++++++++|++++....+ . ......+ +...
T Consensus 94 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-------~-~~~~~~~--~~~~----------- 152 (562)
T 3ite_A 94 AIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-------E-LPPETKV--LDTK----------- 152 (562)
T ss_dssp HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-------C-CCTTCEE--EETT-----------
T ss_pred HHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-------c-cCcccee--eccc-----------
Confidence 99999999999999999999999999999999999999986543211 0 0001111 1110
Q ss_pred CCCCCCchhhHHHhhcCCCCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhccc--------ccccCCC
Q 008636 159 RIPPADFVDTYENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLI--------DWVVPKQ 230 (558)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~--------~~~~~~~ 230 (558)
...+.+........ .......++++++|+|||||||.||+|.++|+++......... .+.+...
T Consensus 153 -------~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~ 224 (562)
T 3ite_A 153 -------NQSFIENLSTQDTS-DILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGV 224 (562)
T ss_dssp -------CHHHHHHHHHSCCS-CCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTT
T ss_pred -------chhhhhhccccccc-ccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcC
Confidence 01222222221111 1112355778999999999999999999999999766554332 2456788
Q ss_pred CEEEEecCchhhhhhhHHHHHHHhcceEEEecCCC-HHHHHHHHHHhCCcEEEehHHHHHHHhcCccccCCCCceEEEEe
Q 008636 231 SVLLWTLPMFHNNGWSFTWGAAVVGATNVCLRKFD-APTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQLDRPVRILTA 309 (558)
Q Consensus 231 ~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~l~~v~~~ 309 (558)
+++++..|++|..++..++.++..|+++++.+.+. +..+++.++++++|++.++|++++.+... ...++++|.+++|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~--~~~~~~lr~~~~g 302 (562)
T 3ite_A 225 GKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV--PEDAPHLVYLGVG 302 (562)
T ss_dssp CEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC--GGGSTTCCEEEEE
T ss_pred ceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC--ccccCceEEEEEe
Confidence 99999999999888888889999999999876543 57788999999999999999999888554 3467899999999
Q ss_pred cCCCChhhhHHhhh-cCCeeeecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCC
Q 008636 310 GSPPPAPVLLRTES-LGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKR 388 (558)
Q Consensus 310 g~~l~~~~~~~~~~-~~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~ 388 (558)
|+++++++.+.+.+ +++.+++.||+||++..+........ ....++|.|.++. +++|+|++++..++.
T Consensus 303 G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~----------~~~~~~G~p~~~~-~~~i~d~~~~~~~~~ 371 (562)
T 3ite_A 303 GEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPD----------SDTRCIGHPLGDS-VAHVLAPGSNEHVKK 371 (562)
T ss_dssp SSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTT----------SCTTEEEEECTTC-EEEEECTTSSCBCCT
T ss_pred cCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCC----------CCCccccccCCCC-eEEEEeCCCCCCCCC
Confidence 99999999999985 48999999999999876665432211 2234789999998 999999888888988
Q ss_pred CCCeeeEEEEecccccccccCCchhhcccccCC--ceeeCceeEEccCCcEEEecccCCeeeeCceeechHHHHHHHhcC
Q 008636 389 DGQTRGEIVMRGGSLMLGYLKDPEATSKCMKDG--RYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSH 466 (558)
Q Consensus 389 ~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 466 (558)
| +.|||+|+|++++.|||++|+.+...+.+| ||+|||+|++|+||++++.||+||+||++|++|+|.+||+.|.++
T Consensus 372 g--~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~ 449 (562)
T 3ite_A 372 G--MAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSL 449 (562)
T ss_dssp T--SCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC-----------------------
T ss_pred C--CceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhc
Confidence 8 889999999999999999999887777677 999999999999999999999999999999999999999999998
Q ss_pred -CCcceeEEEeeeCCCCCceeEEEEEecCCCCCC--------CCCCCHHHHHHHHHhcCCCccccCeEEEecccCCC-CC
Q 008636 467 -PMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSG--------GMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKT-AT 536 (558)
Q Consensus 467 -~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~--------~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t-~~ 536 (558)
+.+.+++|++.+++..++..++.++...+.... +.....++|+++++++|+.|++|+.|+++++||+| ++
T Consensus 450 ~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~ 529 (562)
T 3ite_A 450 SPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTS 529 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCC
Confidence 778889988888877777666655544332210 11123458999999999999999999999999998 89
Q ss_pred CcchhHHHHHHHhhccc
Q 008636 537 GKVQKYVLGDIANSMSM 553 (558)
Q Consensus 537 GK~~r~~l~~~~~~~~~ 553 (558)
||++|++|++++++...
T Consensus 530 GKi~r~~L~~~~~~~~~ 546 (562)
T 3ite_A 530 AKTDAKALEHMFHTLSL 546 (562)
T ss_dssp -----------------
T ss_pred CcchHHHHHHHHhccCH
Confidence 99999999999987654
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=1.2e-72 Score=597.26 Aligned_cols=509 Identities=17% Similarity=0.174 Sum_probs=412.7
Q ss_pred CCCCCChhhHHHHHhhcCCCCceEEEC----CccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHh
Q 008636 10 NSCPLTPLGFIERAATACDDCPSIIYN----DTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVP 85 (558)
Q Consensus 10 ~~~~~tl~~~l~~~a~~~p~~~a~~~~----~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 85 (558)
..+.+|+.++|+++++++|+++|+++. ++++||+||.+++.++|++|+++|+++||+|+|+++|++++++++|||+
T Consensus 7 ~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~ 86 (590)
T 3kxw_A 7 YLQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCL 86 (590)
T ss_dssp HHTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred hcCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHH
Confidence 346789999999999999999999874 4799999999999999999999999999999999999999999999999
Q ss_pred hcCcEEEeccccCC---hHHHHHHHhhcCccEEEEeCcChHHHHHHh-hcCCCCCCCCcEEEEcCCccccCCCCCCCCCC
Q 008636 86 MSGAIFNTINTRLD---ARTISIILKHSESKLVFVDHLSSSLLLEVV-SLFPPHSKTPKLVLITDDKEISSSSSPPPRIP 161 (558)
Q Consensus 86 ~~G~~~v~l~~~~~---~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (558)
++|++++|++|..+ .+++..+++.+++++++++.+....+.... .... ....+..+..+.
T Consensus 87 ~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~------------- 150 (590)
T 3kxw_A 87 YAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNP---KFLKIPAIALES------------- 150 (590)
T ss_dssp HTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CC---EETTEEEEEGGG-------------
T ss_pred HhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcc---cccccceeechh-------------
Confidence 99999999999884 578999999999999999876554433221 1000 011111111110
Q ss_pred CCCchhhHHHhhcCCCCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhcccccccCCCCEEEEecCchh
Q 008636 162 PADFVDTYENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFH 241 (558)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 241 (558)
+.... ..........++++++|+|||||||.||+|.++|+++..........+++.+++++++.+|++|
T Consensus 151 ----------~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h 219 (590)
T 3kxw_A 151 ----------IELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHH 219 (590)
T ss_dssp ----------CCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTS
T ss_pred ----------ccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCc
Confidence 00000 0001112356789999999999999999999999999998888888889999999999999999
Q ss_pred hhhhhH-HHHHHHhcceEEEecCC----CHHHHHHHHHHhCCcEEEehHHHHHHHhcCc-----cccCCCCceEEEEecC
Q 008636 242 NNGWSF-TWGAAVVGATNVCLRKF----DAPTVFALIRKHGVTHMCGAPIVLNLLSSSP-----EAKQLDRPVRILTAGS 311 (558)
Q Consensus 242 ~~g~~~-~~~~l~~g~~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~-----~~~~~~~l~~v~~~g~ 311 (558)
..|+.. ++.+++.|+++++.+.+ ++..+++.++++++|++.++|.++..+.+.. ....++++|.+++||+
T Consensus 220 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~ 299 (590)
T 3kxw_A 220 DMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAE 299 (590)
T ss_dssp HHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSS
T ss_pred chhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCC
Confidence 999865 88999999999998764 7899999999999999999999999887643 3446789999999999
Q ss_pred CCChhhhHHhhh-c------CCeeeecccCCCCCCcccccCCCCCCCC---------------CC-hhhhhhhcccCCce
Q 008636 312 PPPAPVLLRTES-L------GFIVSHGYGKTEIAGVNVSCAWKPKWNK---------------LP-ARERASLKARQGVR 368 (558)
Q Consensus 312 ~l~~~~~~~~~~-~------~~~v~~~YG~tE~g~~~~~~~~~~~~~~---------------~~-~~~~~~~~~~~g~~ 368 (558)
++++++.+++.+ + +.++++.||+||++++++.+.....+.. .. .........++|.|
T Consensus 300 ~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p 379 (590)
T 3kxw_A 300 PVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNP 379 (590)
T ss_dssp CCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEE
T ss_pred CCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCC
Confidence 999999999874 3 3479999999999987775432211100 00 01112344678888
Q ss_pred ecccceeeEeCCCCCcccCCCCCeeeEEEEecccccccccCCchhhcccccC-------C--ceeeCceeEEccCCcEEE
Q 008636 369 TIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCMKD-------G--RYYTGDVGMMHPDGYLEI 439 (558)
Q Consensus 369 ~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-------g--~~~TGD~~~~~~~g~l~~ 439 (558)
.++ ++|+|++++.+++.| +.|||+|+|++++.|||++|+.+...|.+ | ||+|||+|+++ +|.+++
T Consensus 380 ~~~---v~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~ 453 (590)
T 3kxw_A 380 IQE---VKIIDPDTLIPCDFD--QVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYV 453 (590)
T ss_dssp SSE---EEEECTTTCCBCCTT--BCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEE
T ss_pred CCC---eEEEcCCCCcCCCCC--CEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEE
Confidence 876 789998778999888 88999999999999999999999988843 5 99999999999 999999
Q ss_pred ecccCCeeeeCceeechHHHHHHH-hcCCCcc--eeEEEeeeCCCCCceeEEEEEecCCCCCCCCCCCHHHHHHHHHhcC
Q 008636 440 KDRSKDVIISGGENISSTEIESVL-YSHPMVN--EAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARI 516 (558)
Q Consensus 440 ~GR~~d~i~~~G~~v~~~~iE~~l-~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l 516 (558)
.||+||+||++|++|+|.+||+.| ..+|.|. +|+|++++++. ++.+++++++.++.... .+.+++.+++++.+
T Consensus 454 ~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~---~~~~~l~~~l~~~l 529 (590)
T 3kxw_A 454 TGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDD---VAQDNLFNEIFELV 529 (590)
T ss_dssp EEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCH---HHHHHHHHHHHHHH
T ss_pred EcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccccc---hhHHHHHHHHHHHH
Confidence 999999999999999999999999 7889998 89999998876 77888888887653211 45678888898888
Q ss_pred CC-ccccC-eEEEe--cccCCCCCCcchhHHHHHHHhhccccc
Q 008636 517 PR-YMVPK-TVVFI--DELPKTATGKVQKYVLGDIANSMSMSH 555 (558)
Q Consensus 517 ~~-~~~p~-~i~~v--~~~P~t~~GK~~r~~l~~~~~~~~~~~ 555 (558)
+. +++|. .++++ ++||+|++||++|++|++++.+...+.
T Consensus 530 ~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~~~~~ 572 (590)
T 3kxw_A 530 YENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDKTLPI 572 (590)
T ss_dssp HHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHTCSCC
T ss_pred HHHcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcCCCce
Confidence 75 67775 56665 799999999999999999998876653
No 29
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=3.4e-72 Score=639.58 Aligned_cols=496 Identities=22% Similarity=0.262 Sum_probs=421.1
Q ss_pred CCCCCCCCCCCCChhhHHHHHhhcCCCCceEEECCccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 008636 3 RLKPNPANSCPLTPLGFIERAATACDDCPSIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHF 82 (558)
Q Consensus 3 ~~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 82 (558)
+++....+.+..++.++|+++++++|+++|+++.++++||+||.++++++|+.|++.|+++|++|+|++++++++++++|
T Consensus 453 ~~~~~~~~~~~~~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~l 532 (1304)
T 2vsq_A 453 GLNPPAQAHETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGIL 532 (1304)
T ss_dssp TTSCCCCCCCCCCHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHH
T ss_pred hcCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHH
Confidence 45555556667899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcEEEeccccCChHHHHHHHhhcCccEEEEeCcChHHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCCCCCC
Q 008636 83 AVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPP 162 (558)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (558)
||+++|++++|++|.++.+++..++++++++++|++.+....+.. .. .....+.+.+...
T Consensus 533 ailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~----~~---~~~~~~~~~~~~~------------- 592 (1304)
T 2vsq_A 533 GVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE----LP---YTGTTLFIDDQTR------------- 592 (1304)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT----CC---CCSEEEESSCGGG-------------
T ss_pred HHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc----cC---CCCcEEEeccccc-------------
Confidence 999999999999999999999999999999999998764322110 11 0112222221100
Q ss_pred CCchhhHHHhhcCCCCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhcccccccCCCCEEEEecCchhh
Q 008636 163 ADFVDTYENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHN 242 (558)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 242 (558)
.... .........++++++|+|||||||.||||.++|+++.+. .+....+++.++++++...|++|.
T Consensus 593 ----------~~~~--~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd 659 (1304)
T 2vsq_A 593 ----------FEEQ--ASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFD 659 (1304)
T ss_dssp ----------GGSC--SSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTST
T ss_pred ----------cccc--cCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHH
Confidence 0000 001112356789999999999999999999999998865 555566788999999999999998
Q ss_pred hhhhHHHHHHHhcceEEEecC---CCHHHHHHHHHHhCCcEEEehHHHHHHHhcCccccCCCCceEEEEecCCCChhhhH
Q 008636 243 NGWSFTWGAAVVGATNVCLRK---FDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQLDRPVRILTAGSPPPAPVLL 319 (558)
Q Consensus 243 ~g~~~~~~~l~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~l~~v~~~g~~l~~~~~~ 319 (558)
.+...++.+++.|+++++.+. .++..+++.++++++|++.++|++++.+.+.. ...++++|.+++|||+++.++.+
T Consensus 660 ~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~-~~~~~~lr~~~~gGe~l~~~~~~ 738 (1304)
T 2vsq_A 660 AFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG-EDWMKGLRCILFGGERASVPHVR 738 (1304)
T ss_dssp HHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC-SHHHHTCSEEEEESSCCCHHHHH
T ss_pred HHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc-hhcCCCccEEEEecCCCCHHHHH
Confidence 888889999999999999874 68999999999999999999999999997643 23356899999999999999999
Q ss_pred Hhhh-c-CCeeeecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCCCCCeeeEEE
Q 008636 320 RTES-L-GFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIV 397 (558)
Q Consensus 320 ~~~~-~-~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~ 397 (558)
++.+ + +.+++|.||+||++..++.+..... .......++|.|.++. +++|+|+ ++++++.| +.|||+
T Consensus 739 ~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~-------~~~~~~~~iG~p~~~~-~~~i~d~-~~~~~p~G--~~GEl~ 807 (1304)
T 2vsq_A 739 KALRIMGPGKLINCYGPTEGTVFATAHVVHDL-------PDSISSLPIGKPISNA-SVYILNE-QSQLQPFG--AVGELC 807 (1304)
T ss_dssp HHHHHHCTTCEEEEECCGGGSSCSEEEECCCC-------CSSCSSCCCBEECTTE-EEEEECT-TSCBCCTT--CCEEEE
T ss_pred HHHHhCCCCEEEEeEChhHHhHHheeeeccCc-------cccCCCCCCceeeCCC-EEEEECC-CcCCCCCC--CceEEE
Confidence 8874 3 5789999999999887665432110 0112235789999998 9999997 68889988 889999
Q ss_pred EecccccccccCCchhhccccc-------CCceeeCceeEEccCCcEEEecccCCeeeeCceeechHHHHHHHhcCCCcc
Q 008636 398 MRGGSLMLGYLKDPEATSKCMK-------DGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVN 470 (558)
Q Consensus 398 v~~~~~~~gy~~~~~~~~~~~~-------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~ 470 (558)
|+|+++++||+++|+.+.+.|. ++||+|||+|++++||.++++||+||+||++|++|+|.+||+.|.++|+|.
T Consensus 808 i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~ 887 (1304)
T 2vsq_A 808 ISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVK 887 (1304)
T ss_dssp EEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCC
T ss_pred EeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCc
Confidence 9999999999999999998882 359999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeeeCCCCCceeEEEEEecCCCCCCCCCCCHHHHHHHHHhcCCCccccCeEEEecccCCCCCCcchhHHHHHHHhh
Q 008636 471 EAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIANS 550 (558)
Q Consensus 471 ~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GK~~r~~l~~~~~~ 550 (558)
+++|++.+++..+..++++++.... .+.++++++++++||.|++|..|+++++||+|++||++|++|++....
T Consensus 888 ~a~V~~~~~~~~~~~l~a~vv~~~~-------~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~~~ 960 (1304)
T 2vsq_A 888 DAVVVADRHESGDASINAYLVNRTQ-------LSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQD 960 (1304)
T ss_dssp EEEEEEECCSSSCCEEEEEEECSSS-------SCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCCGG
T ss_pred eEEEEEEecCCCCEEEEEEEeCCCC-------CCHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCcchh
Confidence 9999999888888899999987652 678899999999999999999999999999999999999999776543
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=3e-71 Score=585.33 Aligned_cols=503 Identities=19% Similarity=0.193 Sum_probs=412.1
Q ss_pred CCCChhhHHHHHhhcCCCCceEEEC---CccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcC
Q 008636 12 CPLTPLGFIERAATACDDCPSIIYN---DTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSG 88 (558)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~~~a~~~~---~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 88 (558)
...|+.++|+++++++|+.+++... ++++||+||.+++.++|++|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 19 ~~~tl~~~l~~~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 98 (576)
T 3gqw_A 19 DFPTLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAG 98 (576)
T ss_dssp CCSSHHHHHHHHTTSSCEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHhhCCCCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhC
Confidence 3449999999999999998887653 3789999999999999999999999999999999999999999999999999
Q ss_pred cEEEeccccCC-------hHHHHHHHhhcCccEEEEeCcChHHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCCCCC
Q 008636 89 AIFNTINTRLD-------ARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIP 161 (558)
Q Consensus 89 ~~~v~l~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (558)
++++|+++.++ .+++.++++.++++++|++.+....+........ .+.....
T Consensus 99 ~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~------~~~~~~~--------------- 157 (576)
T 3gqw_A 99 LVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNP------ELHVLSH--------------- 157 (576)
T ss_dssp CEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCT------TCEEEEH---------------
T ss_pred CeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCC------cceecch---------------
Confidence 99999999998 7899999999999999999887777766544332 1111110
Q ss_pred CCCchhhHHHhhcCCCCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhcccc-cccCCCCEEEEecCch
Q 008636 162 PADFVDTYENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLID-WVVPKQSVLLWTLPMF 240 (558)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~ 240 (558)
.+..... ..........++++++|+|||||||.||+|.++|+++.......... +++.++|++++.+|++
T Consensus 158 ------~~~~~~~---~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 228 (576)
T 3gqw_A 158 ------AWFKALP---EADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFY 228 (576)
T ss_dssp ------HHHHTSC---CCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTT
T ss_pred ------hhhhccc---ccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCcc
Confidence 0111111 11111123557899999999999999999999999998777665543 7889999999999999
Q ss_pred hhhhhh-HHHHHHHhcceEEEecC----CCHHHHHHHHHHhCCcEEEehHHHHHHHhcCc-----cccCCCCceEEEEec
Q 008636 241 HNNGWS-FTWGAAVVGATNVCLRK----FDAPTVFALIRKHGVTHMCGAPIVLNLLSSSP-----EAKQLDRPVRILTAG 310 (558)
Q Consensus 241 ~~~g~~-~~~~~l~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~-----~~~~~~~l~~v~~~g 310 (558)
|..|+. .++.++..|+++++.+. +++..+++.++++++|++.++|+++..+.+.. ....++++|.+++||
T Consensus 229 h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg 308 (576)
T 3gqw_A 229 HDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGA 308 (576)
T ss_dssp SHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECS
T ss_pred ccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccC
Confidence 999985 46778888988888764 58899999999999999999999998887654 344578999999999
Q ss_pred CCCChhhhHHhhh-c------CCeeeecccCCCCCCcccccCCCCCCCCCC-----------------hhhhhhhcccCC
Q 008636 311 SPPPAPVLLRTES-L------GFIVSHGYGKTEIAGVNVSCAWKPKWNKLP-----------------ARERASLKARQG 366 (558)
Q Consensus 311 ~~l~~~~~~~~~~-~------~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~g 366 (558)
+++++++.+++.+ + +..+++.||+||++.+++.+.......... .........++|
T Consensus 309 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G 388 (576)
T 3gqw_A 309 EPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCG 388 (576)
T ss_dssp SCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCC
T ss_pred ccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecC
Confidence 9999999999874 3 678999999999998877654322211000 000011223789
Q ss_pred ceecccceeeEeCCCCCcccCCCCCeeeEEEEecccccccccCCchhhcccccCCceeeCceeEEccCCcEEEecccCCe
Q 008636 367 VRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCMKDGRYYTGDVGMMHPDGYLEIKDRSKDV 446 (558)
Q Consensus 367 ~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~ 446 (558)
.|.+++ +++|+|+ ++.+++.| +.|||+|+|+++++|||++++.+...+.+|||+|||+|++ +||.+++.||+||+
T Consensus 389 ~p~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~-~dG~l~~~GR~dd~ 463 (576)
T 3gqw_A 389 KALPEH-GIEIRNE-AGMPVAER--VVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKDL 463 (576)
T ss_dssp EECTTC-EEEEECT-TSCBCCTT--BCEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE-ETTEEEEEEETTTC
T ss_pred CcCCCC-eEEEECC-CCCCCCCC--CeEEEEEeCccccccccCCccccccccCCCeeeccceEEE-ECCEEEEEecCcce
Confidence 999998 9999996 88999988 8899999999999999999998888888999999999999 69999999999999
Q ss_pred eeeCceeechHHHHHHHhcCCCcceeEEEeeeCCCCCceeEEEEEecCCCCCCCCCCCHHHHHHHHHhcC-CCccccCeE
Q 008636 447 IISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARI-PRYMVPKTV 525 (558)
Q Consensus 447 i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l-~~~~~p~~i 525 (558)
||++|++|+|.+||++|.++|+|.+++|++..++. +..++++....... ...+++.+.+.+++ +.+++|..+
T Consensus 464 ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~--~~~~~~~~~~~~~~-----~~~~~l~~~l~~~l~~~~~~p~~i 536 (576)
T 3gqw_A 464 IIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQ--EKIILQIQCRISDE-----ERRGQLIHALAARIQSEFGVTAAI 536 (576)
T ss_dssp EEETTEEECHHHHHHHHTTSSSCCTTSEEEEECTT--SCEEEEEECCCCCH-----HHHHHHHHHHHHHHHHHHSCCEEE
T ss_pred EEECCEEECHHHHHHHHHhCcccccccEEEEEcCC--ccEEEEEEEecCch-----hHHHHHHHHHHHHHHHHhCCceeE
Confidence 99999999999999999999999999988887764 33555555544322 45667888888888 678899988
Q ss_pred EEec--ccCCCCCCcchhHHHHHHHhhcccccC
Q 008636 526 VFID--ELPKTATGKVQKYVLGDIANSMSMSHS 556 (558)
Q Consensus 526 ~~v~--~~P~t~~GK~~r~~l~~~~~~~~~~~~ 556 (558)
.+++ +||+|++||++|++|++++++.....+
T Consensus 537 ~~v~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~ 569 (576)
T 3gqw_A 537 DLLPPHSIPRTSSGKPARAEAKKRYQKAYAASL 569 (576)
T ss_dssp EEECSSCSCBCTTSSBCHHHHHHHHHHHHTCC-
T ss_pred EEECCCCcCcCCCccchHHHHHHHHHHHhhhcc
Confidence 8887 899999999999999999988765543
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=2.9e-58 Score=475.01 Aligned_cols=403 Identities=20% Similarity=0.232 Sum_probs=314.0
Q ss_pred CCCCCCCCCChhhHHHHHhhcCCCCceEEECC---------ccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchh
Q 008636 6 PNPANSCPLTPLGFIERAATACDDCPSIIYND---------TTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPA 76 (558)
Q Consensus 6 ~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~---------~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~ 76 (558)
..-.+.+.+|+.++|+++++++|+++|+++.+ +++||+||.+++.++|++|+++|+ +||+|+|+++|+++
T Consensus 16 ~~~~~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e 94 (480)
T 3t5a_A 16 PRGSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLE 94 (480)
T ss_dssp --------CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHH
T ss_pred cccCCCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHH
Confidence 33445567899999999999999999999865 799999999999999999999996 99999999999999
Q ss_pred HHHHHHHHhhcCcEEEeccc---cCChHHHHHHHhhcCccEEEEeCcChHHHHHHhhcCCCCCCCCcEEEEcCCccccCC
Q 008636 77 MYELHFAVPMSGAIFNTINT---RLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDDKEISSS 153 (558)
Q Consensus 77 ~~~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (558)
+++++|||+++|++++|+++ ..+.+++.++++.++++++|++.+....+.+........ ....++..+...
T Consensus 95 ~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----- 168 (480)
T 3t5a_A 95 YVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGE-SPPSIIEVDLLD----- 168 (480)
T ss_dssp HHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC-------CCEEEEGGGSC-----
T ss_pred HHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccc-cccceeEecccc-----
Confidence 99999999999999999999 778999999999999999999998777666543322210 011222221110
Q ss_pred CCCCCCCCCCCchhhHHHhhcCCCCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhcccccccCC----
Q 008636 154 SSPPPRIPPADFVDTYENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPK---- 229 (558)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~~~~~~~---- 229 (558)
.............++++++|+|||||||.||+|.++|+++..........+....
T Consensus 169 ---------------------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~ 227 (480)
T 3t5a_A 169 ---------------------LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIP 227 (480)
T ss_dssp ---------------------TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCC
T ss_pred ---------------------cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCC
Confidence 0000011112356789999999999999999999999999888877777676666
Q ss_pred --CCEEEEecCchhhhhh-hHHHHHHHhcceEEEecCC----CHHHHHHHHHHhCCcEEEehHHHHHHHhcC------cc
Q 008636 230 --QSVLLWTLPMFHNNGW-SFTWGAAVVGATNVCLRKF----DAPTVFALIRKHGVTHMCGAPIVLNLLSSS------PE 296 (558)
Q Consensus 230 --~~~~~~~~p~~~~~g~-~~~~~~l~~g~~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~------~~ 296 (558)
++++++.+|++|..|+ ..++.+++.|+++++.+.. ++..+++.++++++| +..+|+++..++.. ..
T Consensus 228 ~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~ 306 (480)
T 3t5a_A 228 PPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMA 306 (480)
T ss_dssp CTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGT
T ss_pred CCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCccccc
Confidence 8999999999999997 4688999999999998753 899999999999999 78888888777653 14
Q ss_pred ccCCCCceEEEEecCCCChhhhHHhhh-c------CCeeeecccCCCCCCcccccCCCCCCCC--CChhh----------
Q 008636 297 AKQLDRPVRILTAGSPPPAPVLLRTES-L------GFIVSHGYGKTEIAGVNVSCAWKPKWNK--LPARE---------- 357 (558)
Q Consensus 297 ~~~~~~l~~v~~~g~~l~~~~~~~~~~-~------~~~v~~~YG~tE~g~~~~~~~~~~~~~~--~~~~~---------- 357 (558)
...++++|.+++||+++++++.+++.+ + ++.+++.||+||++.+++.......... .....
T Consensus 307 ~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 386 (480)
T 3t5a_A 307 GRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCA 386 (480)
T ss_dssp TCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCC
T ss_pred ccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecC
Confidence 456889999999999999999999884 4 2479999999999987766543211100 00000
Q ss_pred --hhhhcccCCceecccceeeEeCCCCCcccCCCCCeeeEEEEecccccccccCCchhhcccc------------cCCce
Q 008636 358 --RASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCM------------KDGRY 423 (558)
Q Consensus 358 --~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~------------~~g~~ 423 (558)
......++|.|.+ . +++|+|++++.+++.| +.|||+|+|++++.|||++|+.+.+.| .+|||
T Consensus 387 ~~~~~~~~~~G~p~~-~-~~~ivd~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~ 462 (480)
T 3t5a_A 387 GGGATSLISYMLPRS-P-IVRIVDSDTCIECPDG--TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWL 462 (480)
T ss_dssp SSSCEEEECEECCSS-S-EEEEEETTTTEECCTT--BCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBE
T ss_pred CCCcceeeecCcccC-C-EEEEEcCCCCcCCCCC--CEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCee
Confidence 0233457899998 6 9999999778999988 889999999999999999999999888 35699
Q ss_pred eeCceeEEccCCcEEEecc
Q 008636 424 YTGDVGMMHPDGYLEIKDR 442 (558)
Q Consensus 424 ~TGD~~~~~~~g~l~~~GR 442 (558)
+|||+|+++ ||+|++.||
T Consensus 463 ~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 463 RTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp EEEEEEEEE-TTEEEECC-
T ss_pred eccceeeEE-CCEEEEeCC
Confidence 999999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=1.2e-53 Score=420.14 Aligned_cols=316 Identities=18% Similarity=0.170 Sum_probs=268.2
Q ss_pred CCCceEEEccCCCCCCCceeeecHHHHHHHHHhcccccccCCCCEEEEecCchhhhhhhHHHHHHHhcceEEEecCCCHH
Q 008636 188 DLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVCLRKFDAP 267 (558)
Q Consensus 188 ~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~~~~~ 267 (558)
.+++++|+|||||||.||+|.+||+++..........++++++|++++.+|++|.+|+..++.++..|+++++.++. .
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~--~ 113 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT--A 113 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC--S
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc--c
Confidence 36899999999999999999999999998888888888999999999999999999999899999999999988642 2
Q ss_pred HHHHHHHHhCCcEEEehHHHHHHHhcCc-cccCCCCceEEEEecCCCChhhhHHhhhcCCeeeecccCCCCCCcccccCC
Q 008636 268 TVFALIRKHGVTHMCGAPIVLNLLSSSP-EAKQLDRPVRILTAGSPPPAPVLLRTESLGFIVSHGYGKTEIAGVNVSCAW 346 (558)
Q Consensus 268 ~~~~~i~~~~~t~l~~~p~~l~~l~~~~-~~~~~~~l~~v~~~g~~l~~~~~~~~~~~~~~v~~~YG~tE~g~~~~~~~~ 346 (558)
..++.++++++|++.++|+++..|++.. ....++++|.+++||+++++++.++++++++++++.||+||+++.+.....
T Consensus 114 ~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~~~~~ 193 (358)
T 4gs5_A 114 NPLAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVALKAL 193 (358)
T ss_dssp CTTTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEEEEEC
T ss_pred cHHHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEcccCCCchheecccccCceEEeccccccccceeecccc
Confidence 3456788999999999999999998876 455688999999999999999999999889999999999999876665432
Q ss_pred CCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCCCCCeeeEEEEecccccccccCCchhhcccccCCceeeC
Q 008636 347 KPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCMKDGRYYTG 426 (558)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TG 426 (558)
.. ...+.+|.+.+++ .+.+.+ .||++++|+.. .+|||+||
T Consensus 194 ~~-----------~~~g~~~~~~pgv-~~~~~~-------------~Gel~~~g~~~---------------~~g~~~TG 233 (358)
T 4gs5_A 194 NG-----------PEASELYVFLPGI-QYGVDE-------------RGCLHISGAVT---------------NGQTVQTN 233 (358)
T ss_dssp SS-----------TTCCSCEEECTTC-EEEECT-------------TSEEEEESGGG---------------TTCCEEEE
T ss_pred cc-----------cccceeeccCCCe-EEEecC-------------cCceEEecccc---------------cCcceecC
Confidence 11 1234566777766 555533 38999987522 37899999
Q ss_pred ceeEEccCCcEEEecccCCeeeeCceeechHHHHHHHh---cCCCcceeEEE-eeeCCCCCceeEEEEEecCCCCCCCCC
Q 008636 427 DVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLY---SHPMVNEAAVV-GRPDPFWQEIPCAFVSLKTGTDSGGMM 502 (558)
Q Consensus 427 D~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~---~~~~v~~~~v~-~~~~~~~~~~~~~~v~~~~~~~~~~~~ 502 (558)
|+|++|++| ++++||+||+||++|++|+|.+||+.|. +||.|.+++|+ +.+++..|+.++++|+.....
T Consensus 234 Dlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~------ 306 (358)
T 4gs5_A 234 DLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPE------ 306 (358)
T ss_dssp EEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCH------
T ss_pred CccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCCC------
Confidence 999999888 6677999999999999999999998774 57999998876 677888899999988765442
Q ss_pred CCHHHHHHHHHhcCCCccccCeEEEecccCCCCCCcchhHHHHHHHhhcc
Q 008636 503 TTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIANSMS 552 (558)
Q Consensus 503 ~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GK~~r~~l~~~~~~~~ 552 (558)
...++|+++++++|+.|++|+.|+++++||+|++||++|++|++.+++..
T Consensus 307 ~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~~ 356 (358)
T 4gs5_A 307 ALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDSS 356 (358)
T ss_dssp HHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC---
T ss_pred cCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhhc
Confidence 46678999999999999999999999999999999999999999988754
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=8.8e-48 Score=390.88 Aligned_cols=327 Identities=20% Similarity=0.199 Sum_probs=263.8
Q ss_pred CCC-CCceEEEccCCCCCCCceeeecHHHHHHHHHhc---ccccccCCCCEEEEecCchhhhh-hhHHHHHHHhcceEEE
Q 008636 186 KSD-LDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDS---LIDWVVPKQSVLLWTLPMFHNNG-WSFTWGAAVVGATNVC 260 (558)
Q Consensus 186 ~~~-~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~g-~~~~~~~l~~g~~~~~ 260 (558)
..+ +++++++|||||||.||+|.++|+++....... ...+++.++|+++...|+.|..+ +...+.++..|+++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 445 789999999999999999999999986655444 33457889999999999865544 4677888999999999
Q ss_pred ecCCCHHHHHHHHHHhCCcEEEehHHHHHHHhcCccc----cCCCCceEEEEecCCCChhhhHHhhh-cCCeeeecccCC
Q 008636 261 LRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEA----KQLDRPVRILTAGSPPPAPVLLRTES-LGFIVSHGYGKT 335 (558)
Q Consensus 261 ~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~----~~~~~l~~v~~~g~~l~~~~~~~~~~-~~~~v~~~YG~t 335 (558)
.+..++..+++.++++++|++.++|+++..|++.... ..++++|.+++||+++++++.+.+.+ +++++++.||+|
T Consensus 162 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~T 241 (436)
T 3qov_A 162 AAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMT 241 (436)
T ss_dssp CCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEG
T ss_pred CCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcch
Confidence 9888999999999999999999999999999876522 23679999999999999999999985 599999999999
Q ss_pred CCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCCCCCeeeEEEEecccccccccCCchhhc
Q 008636 336 EIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATS 415 (558)
Q Consensus 336 E~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~ 415 (558)
|+++.+...... .....+.+.++. .++|+|++++.+++.| +.|||+|+|. +.
T Consensus 242 E~~~~~~~~~~~-------------~~~g~~~~~~~~-~v~i~d~~~g~~~~~g--~~Gel~v~~~------------~~ 293 (436)
T 3qov_A 242 EMNGPGVAFECQ-------------EQNGMHFWEDCY-LVEIIDPETGEPVPEG--EIGELVLTTL------------DR 293 (436)
T ss_dssp GGTEEEEEEECT-------------TCSSEEECTTTE-EEEEECTTTCSBCSTT--CCEEEEEEES------------SC
T ss_pred hhcCCeeEEecC-------------CCCeeEEccCce-EEEEEECCCCCCCCCC--CceEEEEecc------------Cc
Confidence 995542222110 001233344565 9999998799999988 7899999983 33
Q ss_pred ccccCCceeeCceeEEccCC------c---EEEecccCCeeeeCceeechHHHHHHHhcCCCcceeEEEeeeCCCCCcee
Q 008636 416 KCMKDGRYYTGDVGMMHPDG------Y---LEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIP 486 (558)
Q Consensus 416 ~~~~~g~~~TGD~~~~~~~g------~---l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~ 486 (558)
..|.++||+|||+|+++++| . +++.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+
T Consensus 294 ~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l 373 (436)
T 3qov_A 294 EMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEM 373 (436)
T ss_dssp CSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEE
T ss_pred CCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEE
Confidence 45568999999999999998 5 69999999999999999999999999999999999999999888888999
Q ss_pred EEEEEecCCCCCCCCCCCHHHHHHHHHhcCCCc-cccCeEEEec--ccCCCCCCcchhHH
Q 008636 487 CAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRY-MVPKTVVFID--ELPKTATGKVQKYV 543 (558)
Q Consensus 487 ~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~p~~i~~v~--~~P~t~~GK~~r~~ 543 (558)
+++|++. +... +.....+++.+.+++.|+.+ ++|..+.+++ +||+|+ ||++|..
T Consensus 374 ~a~v~~~-~~~~-~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~ 430 (436)
T 3qov_A 374 IVEVELS-DLST-DNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRVK 430 (436)
T ss_dssp EEEEEEC-TTCC-CCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CEE
T ss_pred EEEEEEc-Cccc-cchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEEE
Confidence 9999988 4331 00113678899999988888 8999999998 999999 9999853
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=2.9e-47 Score=387.95 Aligned_cols=329 Identities=19% Similarity=0.189 Sum_probs=269.6
Q ss_pred CCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhcc---cccccCCCCEEEEecCc-hhhhhhhHHHHHHHhcceEEEe
Q 008636 186 KSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSL---IDWVVPKQSVLLWTLPM-FHNNGWSFTWGAAVVGATNVCL 261 (558)
Q Consensus 186 ~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~l~~g~~~~~~ 261 (558)
..++++++++|||||||.||+|.++|+++........ ..+++.++|+++...|+ +|..++...+.++..|+++++.
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 4568999999999999999999999999866543322 35678899999999998 5777777788899999999998
Q ss_pred cCCCHHHHHHHHHHhCCcEEEehHHHHHHHhcCccc--c--CCCCceEEEEecCCCChhhhHHhh-hcCCeeeecccCCC
Q 008636 262 RKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEA--K--QLDRPVRILTAGSPPPAPVLLRTE-SLGFIVSHGYGKTE 336 (558)
Q Consensus 262 ~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~--~--~~~~l~~v~~~g~~l~~~~~~~~~-~~~~~v~~~YG~tE 336 (558)
+..+++.+++.++++++|++.++|+++..|++.... . .++++|.+++||+++++++.+.++ .+|+++++.||+||
T Consensus 169 ~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE 248 (443)
T 2y4o_A 169 SGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSE 248 (443)
T ss_dssp CSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETT
T ss_pred CCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchh
Confidence 888999999999999999999999999999876421 1 247899999999999999999998 45999999999999
Q ss_pred CCC--cccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCCCCCeeeEEEEecccccccccCCchhh
Q 008636 337 IAG--VNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEAT 414 (558)
Q Consensus 337 ~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~ 414 (558)
+++ ++..+... ....+.+.++. .++|+|++++++++.| +.|||+|+|. +
T Consensus 249 ~~g~~~~~~~~~~--------------~~g~~~~~~~~-~~~i~d~~~g~~~~~G--~~Gel~v~~~------------t 299 (443)
T 2y4o_A 249 VMGPGVACECVET--------------KDGPVIWEDHF-YPEIIDPVTGEVLPDG--SQGELVFTSL------------T 299 (443)
T ss_dssp TTEEEEEEECTTT--------------CCSEEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES------------S
T ss_pred hcCCeEEeccCCC--------------CCceEEccCCe-EEEEEcCCCCCCCCCC--CceEEEEeCC------------C
Confidence 744 33333210 00122233455 8999998789999988 7899999972 3
Q ss_pred cccccCCceeeCceeEEccC-CcE-----EEecccCCeeeeCceeechHHHHHHHhcCCCcceeEEEeeeCCCCCceeEE
Q 008636 415 SKCMKDGRYYTGDVGMMHPD-GYL-----EIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCA 488 (558)
Q Consensus 415 ~~~~~~g~~~TGD~~~~~~~-g~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~ 488 (558)
...|.++||+|||+|+++++ |++ ++.||+||+||++|++|+|.+||++|.++|+|.++++++.+++..++.+++
T Consensus 300 ~~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a 379 (443)
T 2y4o_A 300 KEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDL 379 (443)
T ss_dssp CSSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEE
T ss_pred cccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEE
Confidence 34556889999999999999 986 899999999999999999999999999999999999998877766788999
Q ss_pred EEEecC--CCCCCCCCCCHHHHHHHHHhcCCCc-cccCeEEEe--cccCCCCCCcchhHHHH
Q 008636 489 FVSLKT--GTDSGGMMTTEKDIIQYCRARIPRY-MVPKTVVFI--DELPKTATGKVQKYVLG 545 (558)
Q Consensus 489 ~v~~~~--~~~~~~~~~~~~~l~~~~~~~l~~~-~~p~~i~~v--~~~P~t~~GK~~r~~l~ 545 (558)
+|++.+ +... ...+.++++++++++|+.+ .+|..+.++ ++||+|++||++|...+
T Consensus 380 ~v~~~~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~~ 439 (443)
T 2y4o_A 380 AVELRSEAAASV--TDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVIDR 439 (443)
T ss_dssp EEEECHHHHTTC--CHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEEC
T ss_pred EEEECCcccccc--hhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEec
Confidence 998865 2110 0034578999999988877 488888888 59999999999996533
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=4.9e-47 Score=385.53 Aligned_cols=326 Identities=18% Similarity=0.145 Sum_probs=269.2
Q ss_pred CCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhcc---cccccCCCCEEEEecCc-hhhhhhhHHHHHHHhcceEEEe
Q 008636 186 KSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSL---IDWVVPKQSVLLWTLPM-FHNNGWSFTWGAAVVGATNVCL 261 (558)
Q Consensus 186 ~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~l~~g~~~~~~ 261 (558)
..++++++++|||||||.||+|.++|+++........ ..+++.++|++++.+|+ +|..++...+.++..|+++++.
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 4567999999999999999999999999866543322 34678899999999998 6788887788999999999988
Q ss_pred cCCCHHHHHHHHHHhCCcEEEehHHHHHHHhcCccc--c--CCCCceEEEEecCCCChhhhHHhh-hcCCeeeecccCCC
Q 008636 262 RKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEA--K--QLDRPVRILTAGSPPPAPVLLRTE-SLGFIVSHGYGKTE 336 (558)
Q Consensus 262 ~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~--~--~~~~l~~v~~~g~~l~~~~~~~~~-~~~~~v~~~YG~tE 336 (558)
+..+++.+++.++++++|+++++|+++..|++.... . .++++|.+++||+++++++.+.++ .+|+++++.||+||
T Consensus 167 ~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE 246 (437)
T 2y27_A 167 GGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSE 246 (437)
T ss_dssp CSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETT
T ss_pred CCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchh
Confidence 888999999999999999999999999999876421 1 247899999999999999999998 46999999999999
Q ss_pred CCC--cccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCCCCCeeeEEEEecccccccccCCchhh
Q 008636 337 IAG--VNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEAT 414 (558)
Q Consensus 337 ~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~ 414 (558)
+++ ++..+... ....+.+.++. .++|+|++++++++.| +.|||+++|. +
T Consensus 247 ~~g~~~~~~~~~~--------------~~g~~~~~~~~-~~~i~d~~~g~~~~~g--~~Gel~v~~~------------t 297 (437)
T 2y27_A 247 VMGPGVASECVET--------------KDGPTIWEDHF-YPEIIDPETGEVLPDG--ELGELVFTSL------------T 297 (437)
T ss_dssp TTEEEEEECCTTT--------------CSSCEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES------------S
T ss_pred hcCCeeEEecCCC--------------CCceeEccCce-EEEEEcCCCCCCCCCC--CccEEEEecC------------C
Confidence 843 33333210 00133344555 8999998789999988 7899999982 3
Q ss_pred cccccCCceeeCceeEEcc-CCcE-----EEecccCCeeeeCceeechHHHHHHHhcCCCcceeEEEeeeCCCCCceeEE
Q 008636 415 SKCMKDGRYYTGDVGMMHP-DGYL-----EIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCA 488 (558)
Q Consensus 415 ~~~~~~g~~~TGD~~~~~~-~g~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~ 488 (558)
...|.++||+|||+|++++ +|++ ++.||+||+|+++|++|+|.+||++|.++|+|.++++++++++..++.+++
T Consensus 298 ~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a 377 (437)
T 2y27_A 298 KEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTL 377 (437)
T ss_dssp CSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEE
T ss_pred cCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEE
Confidence 3455689999999999998 6985 899999999999999999999999999999999999998887777888999
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHHHhcCCCc-cccCeEEEe--cccCCCCCCcchhHH
Q 008636 489 FVSLKTGTDSGGMMTTEKDIIQYCRARIPRY-MVPKTVVFI--DELPKTATGKVQKYV 543 (558)
Q Consensus 489 ~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~p~~i~~v--~~~P~t~~GK~~r~~ 543 (558)
+|++.++.... ..+.++++++++++|+.+ .+|..+.++ ++||+|+ ||++|..
T Consensus 378 ~v~~~~~~~~~--~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 378 NVEPCPETAPD--TAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EECBCTTTTTC--HHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EEEECCCccch--hhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 99887653210 024577999999999888 488888888 5999999 9999864
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=1.2e-29 Score=251.58 Aligned_cols=234 Identities=20% Similarity=0.132 Sum_probs=179.8
Q ss_pred CCCCCceEEEccCCCCCCCceeeecHHHHHHHHHh---cccccccCCCCEEEEecCc-hhhhhhhHHHHHHHhcceEEEe
Q 008636 186 KSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVD---SLIDWVVPKQSVLLWTLPM-FHNNGWSFTWGAAVVGATNVCL 261 (558)
Q Consensus 186 ~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~l~~g~~~~~~ 261 (558)
..++++++|+|||||||.||+|.++|+++.....+ ....+++.+++++++..|+ +|..|+...+.++..|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 46789999999999999999999999999877763 3455678899999999999 99999988888888898 6666
Q ss_pred cCCCHH-----------------------HHHHHHHHhCCcEEEehHHHHHHHhcCcc--ccCCCCceEEEEecCCCChh
Q 008636 262 RKFDAP-----------------------TVFALIRKHGVTHMCGAPIVLNLLSSSPE--AKQLDRPVRILTAGSPPPAP 316 (558)
Q Consensus 262 ~~~~~~-----------------------~~~~~i~~~~~t~l~~~p~~l~~l~~~~~--~~~~~~l~~v~~~g~~l~~~ 316 (558)
..+++. .+++.++++++|++.++|+++..|++... ...++++|.+++||++++++
T Consensus 167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~ 246 (369)
T 3hgu_A 167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLD 246 (369)
T ss_dssp CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCHH
T ss_pred ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCHH
Confidence 667777 88889999999999999999999988752 24567899999999999999
Q ss_pred hhHHhh-hc--CCeeeecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCce------ecccceeeEeCCCCCcccC
Q 008636 317 VLLRTE-SL--GFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVR------TIGLTEVDIVDPETGLSVK 387 (558)
Q Consensus 317 ~~~~~~-~~--~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~i~d~~~~~~~~ 387 (558)
+++++. +. ++++++.||+||+++++..+.. .++|.+ .+++ +++|+|++++++++
T Consensus 247 ~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~----------------~~~G~~~~~~~~~~~~-~v~ivD~~~g~~vp 309 (369)
T 3hgu_A 247 EIKFIASEILPDCEFSASYGSTSALGVSRSLLI----------------TSESQQVIYDSFSPFI-TYDVVDSITAQTVE 309 (369)
T ss_dssp HHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB----------------CTTCSSCEEECCTTTE-EEEEECTTTCSBCC
T ss_pred HHHHHHHHhCCCcEEEcccCchhhhcceecccc----------------ccCCCcccccCCCCCe-EEEEECCCCCcCCC
Confidence 999998 65 8999999999999877655431 146777 7776 99999998899999
Q ss_pred CCCCeeeEEEEecccccccccCCchhhcccccCCceeeCceeEEccC--C-------cEEEecccCCeeeeCce
Q 008636 388 RDGQTRGEIVMRGGSLMLGYLKDPEATSKCMKDGRYYTGDVGMMHPD--G-------YLEIKDRSKDVIISGGE 452 (558)
Q Consensus 388 ~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~--g-------~l~~~GR~~d~i~~~G~ 452 (558)
.| +.|||+|++.. ...+ -.+|+|||++...+. | .+..++|.++..++.|.
T Consensus 310 ~G--~~GEl~vt~l~------------~~~~-l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 310 YG--ERGNVIVTHLS------------PWAF-YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp TT--CEEEEEEEEEE------------TTEE-EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred CC--CceEEEEEEcC------------cccc-cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 88 88999999732 1122 236999999988653 2 35566777777766663
No 37
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.49 E-value=3.7e-14 Score=112.43 Aligned_cols=99 Identities=18% Similarity=0.219 Sum_probs=73.1
Q ss_pred cccCCeeeeCceeechHHHHHHHhcCCCcceeEEEeeeCCCCCceeEEEEEecCCCCCCCCCCCHHHHHHHHHhcCC-Cc
Q 008636 441 DRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIP-RY 519 (558)
Q Consensus 441 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~-~~ 519 (558)
||.||+|+++|.+++|.+||++|.++|+|.++++++.+++.+++.+++++++ ++.... .....+++.+.+++.+. .+
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~-~~~~~~~l~~~i~~~l~~~~ 78 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTD-DYGRLQALTREITRQLKDEI 78 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCC-CHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCcccc-chhHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999998888888777778899999998 553210 00133455555555543 23
Q ss_pred cccCeEEEec--ccCCCCCCcchhH
Q 008636 520 MVPKTVVFID--ELPKTATGKVQKY 542 (558)
Q Consensus 520 ~~p~~i~~v~--~~P~t~~GK~~r~ 542 (558)
.++..+.+++ +||+| +||++|.
T Consensus 79 ~~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 79 LVTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp SSCCEEEEECTTCSCCC----CCCE
T ss_pred CCceEEEEECCCCccCC-CCceEEE
Confidence 4555788887 89999 9999874
No 38
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.47 E-value=4e-14 Score=112.54 Aligned_cols=98 Identities=18% Similarity=0.221 Sum_probs=73.6
Q ss_pred cccCCeeeeCceeechHHHHHHHhcCCCcceeEEEeeeCCCCCceeEEEEEecCCCCCCCCCCCHHHHHHHHHhcCCCc-
Q 008636 441 DRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRY- 519 (558)
Q Consensus 441 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~- 519 (558)
.|.||+|+++|.+|+|.+||++|.++|+|.++++++.+++.+++.+.++++..++.... .....++.+.+++.+..+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~--~~~~~~l~~~i~~~l~~~~ 78 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDD--YGRLQALTREITRQLKDEI 78 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCC--HHHHHHHHHHHHHHHHHHH
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccc--cchhhhhHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999999899999999988765411 012344555555544322
Q ss_pred cccCeEEEe--cccCCCCCCcchh
Q 008636 520 MVPKTVVFI--DELPKTATGKVQK 541 (558)
Q Consensus 520 ~~p~~i~~v--~~~P~t~~GK~~r 541 (558)
.++..+.++ ++||+| +||++|
T Consensus 79 gv~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 79 LVTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp SSCCEEEEECTTCSCCC----CCC
T ss_pred CCccceEEEcCCeecCC-CCCcch
Confidence 355567777 489999 799988
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.81 E-value=4.5e-08 Score=99.38 Aligned_cols=74 Identities=14% Similarity=0.149 Sum_probs=55.3
Q ss_pred ccCCCCCeeeEEEEecccccccccCCchhhcccccCCceeeCceeEEcc----CCcEEEecccCCeeeeCceeechHHHH
Q 008636 385 SVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCMKDGRYYTGDVGMMHP----DGYLEIKDRSKDVIISGGENISSTEIE 460 (558)
Q Consensus 385 ~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE 460 (558)
.++.| +.+||++++.+ |.| +|++||+.++.. .+++.|.||.++++.+.|++++..+||
T Consensus 380 eVe~G--~~YelViTt~~---GL~-------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~ 441 (581)
T 4eql_A 380 DVKLG--CTYEPVVTNFA---GLY-------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLF 441 (581)
T ss_dssp GCCTT--CEEEEEEECSS---SCC-------------SEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHH
T ss_pred HcCCC--ceEEEEEeecc---cee-------------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHH
Confidence 34455 78999999752 333 499999999986 468999999999999999999999999
Q ss_pred HHHhcCC------C--cceeEEEe
Q 008636 461 SVLYSHP------M--VNEAAVVG 476 (558)
Q Consensus 461 ~~l~~~~------~--v~~~~v~~ 476 (558)
++|.+.- + |.|..+..
T Consensus 442 ~al~~a~~~l~~~g~~l~eft~~~ 465 (581)
T 4eql_A 442 KAVSQAKLVLESSGLDLKDFTSYA 465 (581)
T ss_dssp HHHHHC--------------CEEE
T ss_pred HHHHHHHHhhhhcCCEEEEEEEec
Confidence 9998542 2 55666654
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.77 E-value=3.9e-08 Score=100.00 Aligned_cols=90 Identities=14% Similarity=0.145 Sum_probs=64.4
Q ss_pred ccCCCCCeeeEEEEecccccccccCCchhhcccccCCceeeCceeEEcc----CCcEEEecccCCeeeeCceeechHHHH
Q 008636 385 SVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCMKDGRYYTGDVGMMHP----DGYLEIKDRSKDVIISGGENISSTEIE 460 (558)
Q Consensus 385 ~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE 460 (558)
.++.| +.+||++++.+ |.| +|++||+++++. .+.+.|.||.++++++.|++++..+||
T Consensus 392 eVe~G--~~YelViTt~~---GL~-------------RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~ 453 (609)
T 4b2g_A 392 HVEVG--KEYELVITTYA---GLY-------------RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQ 453 (609)
T ss_dssp GCCTT--CEEEEEEECTT---SCC-------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHH
T ss_pred HcCCC--CeEEEehhhhh---hhh-------------heecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHH
Confidence 45556 77999998742 444 499999999984 468999999999999999999999999
Q ss_pred HHHhcC------CC--cceeEEEeeeCCCCCceeEEEEEec
Q 008636 461 SVLYSH------PM--VNEAAVVGRPDPFWQEIPCAFVSLK 493 (558)
Q Consensus 461 ~~l~~~------~~--v~~~~v~~~~~~~~~~~~~~~v~~~ 493 (558)
++|.+. .+ |.|..+........+ .-+.+.++.
T Consensus 454 ~av~~a~~~l~~~g~~l~eft~~~d~~~~p~-Hyv~~wEl~ 493 (609)
T 4b2g_A 454 KAVDNASKLLREVNTSVVEYTSFADTKTIPG-HYVIYWELL 493 (609)
T ss_dssp HHHHHHHHGGGGTTEEEEEEEEEEECSSSSC-EEEEEEEEE
T ss_pred HHHHHHHHhhhccCCeEEEEEEecCCCCCCC-cEEEEEEEe
Confidence 988842 23 556666543332222 333344553
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.75 E-value=1.2e-07 Score=96.10 Aligned_cols=90 Identities=17% Similarity=0.083 Sum_probs=64.7
Q ss_pred ccCCCCCeeeEEEEecccccccccCCchhhcccccCCceeeCceeEEccC----CcEEEecccCCeeeeCceeechHHHH
Q 008636 385 SVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCMKDGRYYTGDVGMMHPD----GYLEIKDRSKDVIISGGENISSTEIE 460 (558)
Q Consensus 385 ~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~----g~l~~~GR~~d~i~~~G~~v~~~~iE 460 (558)
.++.| +.+||++++.+ |.| +|++||+.++..- ..+.|.||.++++.+.|++++..+||
T Consensus 387 eve~G--~~YelviTt~~---GL~-------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~ 448 (581)
T 4epl_A 387 QVKIG--EEYEVVITNYA---GLY-------------RYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQ 448 (581)
T ss_dssp GCCTT--CEEEEEEESTT---SCS-------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHH
T ss_pred HcCCC--CeEEEEEeecc---cee-------------eEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHH
Confidence 55556 78999999752 333 5999999999742 57999999999999999999999999
Q ss_pred HHHhcC------C--CcceeEEEeeeCCCCCceeEEEEEec
Q 008636 461 SVLYSH------P--MVNEAAVVGRPDPFWQEIPCAFVSLK 493 (558)
Q Consensus 461 ~~l~~~------~--~v~~~~v~~~~~~~~~~~~~~~v~~~ 493 (558)
++|.+. . .|.|..+........+.. +.+.++.
T Consensus 449 ~al~~a~~~l~~~~~~l~eft~~~d~~~~p~hy-v~~wE~~ 488 (581)
T 4epl_A 449 LSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHY-AIFWEIS 488 (581)
T ss_dssp HHHHHHHHHHHTTTCCEEEEEEEEECSSSSCEE-EEEEEES
T ss_pred HHHHHHHHhhcccCCeEEEEEEecCCCCCCCcE-EEEEeec
Confidence 988752 2 366777765333222333 3334553
No 42
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=92.48 E-value=0.98 Score=44.64 Aligned_cols=93 Identities=10% Similarity=0.002 Sum_probs=75.2
Q ss_pred ccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc--hhHHHHHHHHhhcCcEEEeccccCChHHHHHHHhhcCccEE
Q 008636 38 TTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNI--PAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLV 115 (558)
Q Consensus 38 ~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 115 (558)
-.+|.+.+...+..++..+...|+.++|++...++-+ ...+..+++++..|+..++.++. +.+.+...+++.++.++
T Consensus 104 v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~~ 182 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTAL 182 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCEE
T ss_pred EEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCEE
Confidence 3589999999998898888889999999999988743 34555678889999998887654 67888899999999999
Q ss_pred EEeCcChHHHHHHhhc
Q 008636 116 FVDHLSSSLLLEVVSL 131 (558)
Q Consensus 116 i~~~~~~~~~~~~~~~ 131 (558)
+..+.....+.+....
T Consensus 183 ~~~P~~~~~l~~~~~~ 198 (436)
T 3qov_A 183 HAIPSYAIRLAEVFQE 198 (436)
T ss_dssp ECCHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHH
Confidence 9888777666655433
No 43
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=92.18 E-value=1.4 Score=43.56 Aligned_cols=91 Identities=12% Similarity=0.091 Sum_probs=73.3
Q ss_pred ccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc--hhHHHHHHHHhhcCcEEEeccccCChHHHHHHHhhcCccEE
Q 008636 38 TTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNI--PAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLV 115 (558)
Q Consensus 38 ~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 115 (558)
-.+|.+.+...+..++..+...|+.++|++...++.+ ...+...++++..|+..++++. .+.+.+...+++.++.++
T Consensus 108 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l 186 (437)
T 2y27_A 108 VGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDII 186 (437)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEE
Confidence 3589999998888888888888999999999988853 3345567888899999987765 478888899999999999
Q ss_pred EEeCcChHHHHHHh
Q 008636 116 FVDHLSSSLLLEVV 129 (558)
Q Consensus 116 i~~~~~~~~~~~~~ 129 (558)
++.+.....+.+..
T Consensus 187 ~~~Ps~~~~l~~~~ 200 (437)
T 2y27_A 187 MVTPSYMLSIADEI 200 (437)
T ss_dssp EECHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHH
Confidence 98887766665544
No 44
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=92.04 E-value=1.4 Score=43.58 Aligned_cols=91 Identities=14% Similarity=0.156 Sum_probs=73.5
Q ss_pred ccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc--hhHHHHHHHHhhcCcEEEeccccCChHHHHHHHhhcCccEE
Q 008636 38 TTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNI--PAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLV 115 (558)
Q Consensus 38 ~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 115 (558)
-.+|.+.+...+..++..+...|+.++|++...++-+ ...+...++++..|+..+++++. +.+.+...+++.++.++
T Consensus 110 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l 188 (443)
T 2y4o_A 110 VGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKII 188 (443)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEE
Confidence 3589999998888888888889999999999988864 33455678888999998887654 77888899999999999
Q ss_pred EEeCcChHHHHHHh
Q 008636 116 FVDHLSSSLLLEVV 129 (558)
Q Consensus 116 i~~~~~~~~~~~~~ 129 (558)
+..+.....+.+..
T Consensus 189 ~~~Ps~~~~l~~~~ 202 (443)
T 2y4o_A 189 LVTPSYMLNLIDEM 202 (443)
T ss_dssp EECHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHH
Confidence 98877766665543
No 45
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=83.63 E-value=13 Score=37.62 Aligned_cols=99 Identities=5% Similarity=-0.063 Sum_probs=72.3
Q ss_pred CCCCceEEEC--C-------ccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhH--HH-HHHHHhhcCcEEEec
Q 008636 27 CDDCPSIIYN--D-------TTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAM--YE-LHFAVPMSGAIFNTI 94 (558)
Q Consensus 27 ~p~~~a~~~~--~-------~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~--~~-~~lA~~~~G~~~v~l 94 (558)
.|+.+|++.. + ..+|.+.+...+...... .++.++|++...+|-+..+ .. .+++++..|+..+..
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 4567776641 1 468999887776655443 4688999998888865433 33 478888999998876
Q ss_pred cccCChHHHHHHHhhcCccEEEEeCcChHHHHHHh
Q 008636 95 NTRLDARTISIILKHSESKLVFVDHLSSSLLLEVV 129 (558)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~ 129 (558)
+ ..+.+.+...+++.++.+++..+.....+.+..
T Consensus 257 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 290 (539)
T 1mdb_A 257 P-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAA 290 (539)
T ss_dssp S-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCc
Confidence 5 467888899999999999998877666665543
No 46
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=79.28 E-value=7.7 Score=39.47 Aligned_cols=97 Identities=14% Similarity=0.160 Sum_probs=70.2
Q ss_pred CCceEEEC---------CccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhH--HHHHHHHhhcCcEEEecccc
Q 008636 29 DCPSIIYN---------DTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAM--YELHFAVPMSGAIFNTINTR 97 (558)
Q Consensus 29 ~~~a~~~~---------~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~v~l~~~ 97 (558)
+.+|++.. +-.+|.+.+...+......+...++.++|++...+|-.-.+ ...+++++ .|+..+..+ .
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~ 269 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K 269 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence 67777652 24689998887766655443336788999998888765433 33456777 999988775 5
Q ss_pred CChHHHHHHHhhcCccEEEEeCcChHHHHH
Q 008636 98 LDARTISIILKHSESKLVFVDHLSSSLLLE 127 (558)
Q Consensus 98 ~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 127 (558)
.+.+.+...+++.++.+++..+.....+..
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 299 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPTLFAILNK 299 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence 678889999999999999987766555543
No 47
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=77.75 E-value=13 Score=37.06 Aligned_cols=97 Identities=12% Similarity=0.156 Sum_probs=71.6
Q ss_pred CCCCceEEEC--C-------ccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchh-HHHHHHHHhhcCcEEEeccc
Q 008636 27 CDDCPSIIYN--D-------TTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPA-MYELHFAVPMSGAIFNTINT 96 (558)
Q Consensus 27 ~p~~~a~~~~--~-------~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~v~l~~ 96 (558)
.++.+|++.. + -.+|.+.+...+..+.. ..++.++|++...+|-.-. .+..+++++..|+..+..+
T Consensus 161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 236 (501)
T 3ipl_A 161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD- 236 (501)
T ss_dssp CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-
Confidence 4677776652 1 46899988877665543 3588999999988876533 3344677888999988775
Q ss_pred cCChHHHHHHHhhcCccEEEEeCcChHHHHH
Q 008636 97 RLDARTISIILKHSESKLVFVDHLSSSLLLE 127 (558)
Q Consensus 97 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 127 (558)
..+.+.+...+++.++.++++.+.....+.+
T Consensus 237 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 267 (501)
T 3ipl_A 237 KFNAEQILTMIKNERITHISLVPQTLNWLMQ 267 (501)
T ss_dssp SCCHHHHHHHHHHSCCCEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCcEEEchHHHHHHHHh
Confidence 4678899999999999999987766655544
No 48
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=77.61 E-value=12 Score=37.53 Aligned_cols=95 Identities=11% Similarity=0.059 Sum_probs=68.5
Q ss_pred CCCceEEE--CC-------ccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHH--HHHHHhhcCcEEEeccc
Q 008636 28 DDCPSIIY--ND-------TTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYE--LHFAVPMSGAIFNTINT 96 (558)
Q Consensus 28 p~~~a~~~--~~-------~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~--~~lA~~~~G~~~v~l~~ 96 (558)
|+.+|++. .+ -.+|.+.+...+..++.. .++.++|++...+|-.-..-. .+++++ .|+..+.. +
T Consensus 169 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~-~ 243 (517)
T 3r44_A 169 GDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM-P 243 (517)
T ss_dssp TTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC-S
T ss_pred CCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe-C
Confidence 46667654 12 468999888777665544 478999999988887654332 345555 88888876 4
Q ss_pred cCChHHHHHHHhhcCccEEEEeCcChHHHHH
Q 008636 97 RLDARTISIILKHSESKLVFVDHLSSSLLLE 127 (558)
Q Consensus 97 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 127 (558)
..+...+...+++.++.++.+.+.....+..
T Consensus 244 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 274 (517)
T 3r44_A 244 QFDATKVWSLIVEERVCIGGAVPAILNFMRQ 274 (517)
T ss_dssp SCCHHHHHHHHHHTTCCEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHh
Confidence 5788889999999999999987766655544
No 49
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=77.57 E-value=10 Score=38.39 Aligned_cols=98 Identities=11% Similarity=0.009 Sum_probs=71.4
Q ss_pred CCCCceEEEC--C-------ccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHH---HHHHHhhcCcEEEec
Q 008636 27 CDDCPSIIYN--D-------TTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYE---LHFAVPMSGAIFNTI 94 (558)
Q Consensus 27 ~p~~~a~~~~--~-------~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~---~~lA~~~~G~~~v~l 94 (558)
.++.+|++.. + ..+|.+.+...+..++.. .++.++|++...+|-+..+-. .+++++..|+..+..
T Consensus 189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 265 (544)
T 3o83_A 189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265 (544)
T ss_dssp CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CccceEEEEECCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence 3567776641 1 468999988777665543 578999999998876544332 478888899988876
Q ss_pred cccCChHHHHHHHhhcCccEEEEeCcChHHHHHH
Q 008636 95 NTRLDARTISIILKHSESKLVFVDHLSSSLLLEV 128 (558)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~ 128 (558)
+ ......+...+++.++.++...+.....+.+.
T Consensus 266 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 298 (544)
T 3o83_A 266 P-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEK 298 (544)
T ss_dssp S-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHCCCEEEechHHHHHHHhc
Confidence 5 45778888899999999999887666655544
No 50
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=76.41 E-value=3.7 Score=39.16 Aligned_cols=103 Identities=12% Similarity=0.050 Sum_probs=66.8
Q ss_pred ChhhHHHHHhhcCCCCceEEE--C-------CccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchh-HHHHHHHH
Q 008636 15 TPLGFIERAATACDDCPSIIY--N-------DTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPA-MYELHFAV 84 (558)
Q Consensus 15 tl~~~l~~~a~~~p~~~a~~~--~-------~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~ 84 (558)
+..+++.++. .|.+|++. . +-.+|++.+...+..++. ..++.++|++...+|-+.. .+..++..
T Consensus 26 ~~~~~~~~w~---~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~ 99 (358)
T 4gs5_A 26 QAYDFMEKWL---GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRG 99 (358)
T ss_dssp HHHHHHHHHH---HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHH
T ss_pred chhhHhhccC---CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHH
Confidence 3444555443 36667654 1 146999998877655544 3578999999988876543 33445666
Q ss_pred hhcCcEEEeccccCChHHHHHHHhhcCccEEEEeCcChHHHH
Q 008636 85 PMSGAIFNTINTRLDARTISIILKHSESKLVFVDHLSSSLLL 126 (558)
Q Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 126 (558)
+..|+..+..++.... ...+++.++.++...+.....+.
T Consensus 100 l~~g~~~~~~~~~~~~---~~~i~~~~~t~~~~~P~~l~~ll 138 (358)
T 4gs5_A 100 MELDWELTVTEPTANP---LAGLDHADFDFVAMVPMQLQSIL 138 (358)
T ss_dssp HHHTCEEEEECCCSCT---TTTCSSCCCSEEEECHHHHHHHH
T ss_pred HHhCcEEEecCccccH---HHHHHHhCCeEEEcChHHHHHhh
Confidence 7778887777665432 34578889999888665554443
No 51
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=75.76 E-value=4.8 Score=38.49 Aligned_cols=85 Identities=12% Similarity=-0.024 Sum_probs=61.1
Q ss_pred ccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchh--HHHHHHHHhhcCcEEEeccccCChH--------------
Q 008636 38 TTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPA--MYELHFAVPMSGAIFNTINTRLDAR-------------- 101 (558)
Q Consensus 38 ~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~v~l~~~~~~~-------------- 101 (558)
..+|.+.+...+..++..+...|+.++|++..++|-+.. -+...++++..|+.+++.+ .++.
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHH
T ss_pred EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhh
Confidence 358999998888877777788899999999998886332 3344555588898555543 3333
Q ss_pred ---------HHHHHHhhcCccEEEEeCcChHH
Q 008636 102 ---------TISIILKHSESKLVFVDHLSSSL 124 (558)
Q Consensus 102 ---------~l~~~l~~~~~~~ii~~~~~~~~ 124 (558)
.+...+++.++.++++.......
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~ 218 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRE 218 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHH
Confidence 66668899999999886654433
No 52
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=75.53 E-value=11 Score=37.76 Aligned_cols=96 Identities=13% Similarity=0.063 Sum_probs=69.6
Q ss_pred CCCCceEEE--CC-------ccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchh-HHHHHHHHhhcCcEEEeccc
Q 008636 27 CDDCPSIIY--ND-------TTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPA-MYELHFAVPMSGAIFNTINT 96 (558)
Q Consensus 27 ~p~~~a~~~--~~-------~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~v~l~~ 96 (558)
.++.+|++. .+ ..+|.+.+...+..... ..++.++|++...+|-+.. .+..+++++..|+..+.+++
T Consensus 142 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 218 (512)
T 3fce_A 142 KGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK 218 (512)
T ss_dssp CTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence 456667654 12 46899888776655443 4578999999998887643 34567888899999988876
Q ss_pred c--CChHHHHHHHhhcCccEEEEeCcChHHH
Q 008636 97 R--LDARTISIILKHSESKLVFVDHLSSSLL 125 (558)
Q Consensus 97 ~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 125 (558)
. .+...+...+++.++.+++..+.....+
T Consensus 219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 249 (512)
T 3fce_A 219 DMIARPKDLFASLEQSDIQVWTSTPSFAEMC 249 (512)
T ss_dssp HHHHSHHHHHHHHHHHCCCEEEECHHHHHHH
T ss_pred HHhhCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 4 4677888899999999998876554443
No 53
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=74.11 E-value=13 Score=37.86 Aligned_cols=89 Identities=9% Similarity=0.032 Sum_probs=65.9
Q ss_pred ccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchh-HHHHHHHHhhcCcEEEeccccCChHHHHHHHhhcCccEEE
Q 008636 38 TTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPA-MYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVF 116 (558)
Q Consensus 38 ~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 116 (558)
..+|.+.+...+......+...++.++|++...+|-... .+...++++..|+..+.++ ..+.+.+...+++.++.+++
T Consensus 208 V~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~ 286 (550)
T 3rix_A 208 VALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSAL 286 (550)
T ss_dssp EEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEEE
T ss_pred hhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEEE
Confidence 468998887766555444444578899999888876543 3445677788899988774 56788899999999999999
Q ss_pred EeCcChHHHHH
Q 008636 117 VDHLSSSLLLE 127 (558)
Q Consensus 117 ~~~~~~~~~~~ 127 (558)
+.......+..
T Consensus 287 ~~P~~~~~l~~ 297 (550)
T 3rix_A 287 LVPTLFSFFAK 297 (550)
T ss_dssp ECHHHHHHHHH
T ss_pred eCcHHHHHHHh
Confidence 87766655544
No 54
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=73.80 E-value=33 Score=35.31 Aligned_cols=99 Identities=12% Similarity=0.023 Sum_probs=71.6
Q ss_pred CCCceEEEC---------CccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCch--hHHH-HHHHHhhcCcEEEecc
Q 008636 28 DDCPSIIYN---------DTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIP--AMYE-LHFAVPMSGAIFNTIN 95 (558)
Q Consensus 28 p~~~a~~~~---------~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~--~~~~-~~lA~~~~G~~~v~l~ 95 (558)
++.+|++.. +..+|.+.+...+...... .++.++|++...+|-+. ++.. .+++++..|+..+..+
T Consensus 183 ~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~ 259 (617)
T 3rg2_A 183 ADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAA 259 (617)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECS
T ss_pred CCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeC
Confidence 567776541 1468999887776665544 46889999999988543 3333 4788888898888765
Q ss_pred ccCChHHHHHHHhhcCccEEEEeCcChHHHHHHhh
Q 008636 96 TRLDARTISIILKHSESKLVFVDHLSSSLLLEVVS 130 (558)
Q Consensus 96 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~ 130 (558)
. .+...+...+++.++.++.........+.+...
T Consensus 260 ~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 293 (617)
T 3rg2_A 260 D-PSATLCFPLIEKHQVNVTALVPPAVSLWLQALI 293 (617)
T ss_dssp S-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhh
Confidence 4 567778889999999999988877666655443
No 55
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=72.93 E-value=20 Score=35.88 Aligned_cols=97 Identities=11% Similarity=0.021 Sum_probs=70.0
Q ss_pred CCCCceEEE--CC-------ccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchh-HHHHHHHHhhcCcEEEeccc
Q 008636 27 CDDCPSIIY--ND-------TTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPA-MYELHFAVPMSGAIFNTINT 96 (558)
Q Consensus 27 ~p~~~a~~~--~~-------~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~v~l~~ 96 (558)
.++.+|++. .+ -.+|.+.+...+..++. ..++.++|++...+|-+.. .+..+++++..|+..+.++.
T Consensus 141 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 217 (511)
T 3e7w_A 141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK 217 (511)
T ss_dssp CTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcCh
Confidence 456677654 12 46899888776655443 3578899999998887644 34457888999999888765
Q ss_pred c--CChHHHHHHHhhcCccEEEEeCcChHHHH
Q 008636 97 R--LDARTISIILKHSESKLVFVDHLSSSLLL 126 (558)
Q Consensus 97 ~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 126 (558)
. .....+...+++.++.+++..+.....+.
T Consensus 218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 249 (511)
T 3e7w_A 218 DAVNKPKVLFEELKKSGLNVWTSTPSFVQMCL 249 (511)
T ss_dssp HHHHSHHHHHHHHHHHCCSEEEECHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 4 46777888999999999988776555443
No 56
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=70.38 E-value=31 Score=35.22 Aligned_cols=98 Identities=6% Similarity=-0.013 Sum_probs=71.4
Q ss_pred CCCCceEEEC---------CccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHH--HHHHHHhhcCcEEEecc
Q 008636 27 CDDCPSIIYN---------DTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMY--ELHFAVPMSGAIFNTIN 95 (558)
Q Consensus 27 ~p~~~a~~~~---------~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~--~~~lA~~~~G~~~v~l~ 95 (558)
.|+.+|++.. +..+|.+.+...+..++. ..++.++|++...+|-.-.+- ..+++++..|+..+..+
T Consensus 165 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~ 241 (590)
T 3kxw_A 165 KSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMS 241 (590)
T ss_dssp CTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECC
T ss_pred CCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeC
Confidence 4667776652 146899998877766544 457899999999888775543 33788888999988876
Q ss_pred ccC---ChHHHHHHHhhcCccEEEEeCcChHHHHH
Q 008636 96 TRL---DARTISIILKHSESKLVFVDHLSSSLLLE 127 (558)
Q Consensus 96 ~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 127 (558)
+.. ....+...+++.++.++.+.......+.+
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~ 276 (590)
T 3kxw_A 242 PFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVK 276 (590)
T ss_dssp HHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHH
T ss_pred HHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHH
Confidence 643 56778888999999998876655555444
No 57
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=68.07 E-value=22 Score=35.89 Aligned_cols=102 Identities=13% Similarity=0.090 Sum_probs=69.9
Q ss_pred CCCCceEEE--CC-------ccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHH-HHHHHHhhcCcEEEeccc
Q 008636 27 CDDCPSIIY--ND-------TTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMY-ELHFAVPMSGAIFNTINT 96 (558)
Q Consensus 27 ~p~~~a~~~--~~-------~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~v~l~~ 96 (558)
.++.+|++. .+ ..+|.+.+...+.... .....++.++|++...+|-.-..- ..+++++..|+..+..++
T Consensus 174 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~ 252 (541)
T 1v25_A 174 PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAAS-LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGP 252 (541)
T ss_dssp CTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTT-STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTT
T ss_pred CCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhh-hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCC
Confidence 346667553 22 3588888764433211 112357889999988887643322 245777888999988876
Q ss_pred cCChHHHHHHHhhcCccEEEEeCcChHHHHHHh
Q 008636 97 RLDARTISIILKHSESKLVFVDHLSSSLLLEVV 129 (558)
Q Consensus 97 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~ 129 (558)
..+.+.+...+++.++.+++..+.....+.+..
T Consensus 253 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 285 (541)
T 1v25_A 253 RLDPASLVELFDGEGVTFTAGVPTVWLALADYL 285 (541)
T ss_dssp CCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCeeEEecchHHHHHHHhhh
Confidence 678899999999999999998877666655443
No 58
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=66.38 E-value=41 Score=33.98 Aligned_cols=103 Identities=8% Similarity=-0.046 Sum_probs=72.3
Q ss_pred CCCCceEEEccCCC-CCCCceeeecHHHHHHHHHhcc---cccccCCCCEEEEecCchhhhhhhHHHHHHHhcceEEEec
Q 008636 187 SDLDPMVLNYTWGT-TSAPKGVVQCYKAFFIIAVDSL---IDWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVCLR 262 (558)
Q Consensus 187 ~~~~~~~i~~TSGt-TG~pk~v~~t~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~ 262 (558)
.++.++++....+. .+. .-.+|++.+........ ...++.++|++...++-+.. ....+++++..|+..+.++
T Consensus 32 ~p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~ 108 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSID-YVMTIYALWRVAATPVPIN 108 (549)
T ss_dssp HTTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHHHHhCCEEEccC
Confidence 35577776553221 121 24578888865554443 34578899999998887532 3456788889999999887
Q ss_pred C-CCHHHHHHHHHHhCCcEEEehHHHHHHHh
Q 008636 263 K-FDAPTVFALIRKHGVTHMCGAPIVLNLLS 292 (558)
Q Consensus 263 ~-~~~~~~~~~i~~~~~t~l~~~p~~l~~l~ 292 (558)
. ...+++...+++.++..++..+.....+.
T Consensus 109 ~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~ 139 (549)
T 3g7s_A 109 PMYKSFELEHILNDSEATTLVVHSMLYENFK 139 (549)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHHHHHH
Confidence 4 67889999999999999999877665543
No 59
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=65.39 E-value=30 Score=34.84 Aligned_cols=97 Identities=13% Similarity=0.047 Sum_probs=70.0
Q ss_pred CCCCceEEEccCCCCCCCceeeecHHHHHHHHHhcc---cccccCCCCEEEEecCchhhhhhhHHHHHHHhcceEEEecC
Q 008636 187 SDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSL---IDWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVCLRK 263 (558)
Q Consensus 187 ~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~ 263 (558)
.++.++++....| -.+|++.+........ ...++.++|++...++-+. -....+++++..|+..+.++.
T Consensus 35 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~-~~~~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLINGANG-------DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSP-EFVLAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH-HHHHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEECCCC-------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH-HHHHHHHHHHHhCCEEeccCC
Confidence 4567776653222 3578988865554433 3457889999999888753 234667888899999998874
Q ss_pred -CCHHHHHHHHHHhCCcEEEehHHHHHHH
Q 008636 264 -FDAPTVFALIRKHGVTHMCGAPIVLNLL 291 (558)
Q Consensus 264 -~~~~~~~~~i~~~~~t~l~~~p~~l~~l 291 (558)
...+++...+++.++..++..+.....+
T Consensus 107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~ 135 (536)
T 3ni2_A 107 FSTPAELAKHAKASRAKLLITQACYYEKV 135 (536)
T ss_dssp TCCHHHHHHHHHHHTEEEEEECGGGTHHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEChHHHHHH
Confidence 6788999999999999999887554443
No 60
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=64.02 E-value=30 Score=32.44 Aligned_cols=89 Identities=8% Similarity=-0.023 Sum_probs=58.8
Q ss_pred CceEEECC--ccccHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEcCCchhHHHHHHHHhhcCcEEEeccccCChHHHHHH
Q 008636 30 CPSIIYND--TTYTWSQTYRRCLQLASSLSSFGI-NPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISII 106 (558)
Q Consensus 30 ~~a~~~~~--~~~Ty~~l~~~v~~la~~L~~~Gv-~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 106 (558)
++.+-.+. .+-++++- .+..+...+.+.|. ++|+.|.+....+=.-..+.++|...|..++.+-|...+..-...
T Consensus 36 ~i~~K~E~~~ptGSfK~R--~a~~~i~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~ 113 (334)
T 3tbh_A 36 KVVLKMECENPMASVKDR--LGFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCL 113 (334)
T ss_dssp EEEEEEGGGSTTSBTHHH--HHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHH
T ss_pred EEEEEeCCCCCccCcHHH--HHHHHHHHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHH
Confidence 45555543 23345543 22223334455564 888887565566777788888888889887777666655566677
Q ss_pred HhhcCccEEEEeCc
Q 008636 107 LKHSESKLVFVDHL 120 (558)
Q Consensus 107 l~~~~~~~ii~~~~ 120 (558)
++..++++++++..
T Consensus 114 ~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 114 LRIFGAEVILTPAA 127 (334)
T ss_dssp HHHTTCEEEEECGG
T ss_pred HHHCCCEEEEECCC
Confidence 89999999999764
No 61
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=63.93 E-value=40 Score=34.29 Aligned_cols=98 Identities=14% Similarity=0.049 Sum_probs=66.7
Q ss_pred CCCCceEEEC--C-------ccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHH--HHHHHHhhcCcEEEecc
Q 008636 27 CDDCPSIIYN--D-------TTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMY--ELHFAVPMSGAIFNTIN 95 (558)
Q Consensus 27 ~p~~~a~~~~--~-------~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~--~~~lA~~~~G~~~v~l~ 95 (558)
.++.+|++.. + ..+|.+ +....... .....|+.++|++..++|-+..+- ..+++.+..|+..+...
T Consensus 204 ~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~--~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~ 280 (570)
T 3c5e_A 204 GSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKM--DAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHL 280 (570)
T ss_dssp BTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHH--HTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEEC
T ss_pred CCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhh--hhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEec
Confidence 3566776541 1 358888 43311111 124468899999988888765433 34678888898888776
Q ss_pred c-cCChHHHHHHHhhcCccEEEEeCcChHHHHH
Q 008636 96 T-RLDARTISIILKHSESKLVFVDHLSSSLLLE 127 (558)
Q Consensus 96 ~-~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 127 (558)
. ..+...+...+++.++.+++..+.....+.+
T Consensus 281 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 313 (570)
T 3c5e_A 281 LPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQ 313 (570)
T ss_dssp CSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHh
Confidence 4 6678889999999999999987765555443
No 62
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=63.15 E-value=40 Score=29.18 Aligned_cols=91 Identities=14% Similarity=0.093 Sum_probs=54.5
Q ss_pred CEEEEecCc--hhhhhhhHHHHHH-HhcceEEEec-CCCHHHHHHHHHHhCCcEEEe------hHHH--HHHHhcCcccc
Q 008636 231 SVLLWTLPM--FHNNGWSFTWGAA-VVGATNVCLR-KFDAPTVFALIRKHGVTHMCG------APIV--LNLLSSSPEAK 298 (558)
Q Consensus 231 ~~~~~~~p~--~~~~g~~~~~~~l-~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~------~p~~--l~~l~~~~~~~ 298 (558)
.+++...+- .|..|...+-..+ ..|..++... ...++.+++.+.+++++++.. +++. +..+.+.....
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~ 172 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEE 172 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHT
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHc
Confidence 445444443 5777775554444 4566665554 568999999999999998777 2221 23333322222
Q ss_pred CCCCceEEEEecCCCChhhhHHh
Q 008636 299 QLDRPVRILTAGSPPPAPVLLRT 321 (558)
Q Consensus 299 ~~~~l~~v~~~g~~l~~~~~~~~ 321 (558)
.+..--.+++||.+++++..+.+
T Consensus 173 ~~~~~v~v~vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 173 KLRDSVKCMFGGAPVSDKWIEEI 195 (215)
T ss_dssp TCGGGSEEEEESSSCCHHHHHHH
T ss_pred CCCCCCEEEEECCCCCHHHHHHh
Confidence 22212357899999997655443
No 63
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=59.63 E-value=68 Score=31.82 Aligned_cols=97 Identities=10% Similarity=-0.044 Sum_probs=67.4
Q ss_pred CCCCceEEEccCCCCCCCceeeecHHHHHHHHHhcc---cccccCCCCEEEEecCchhhhhhhHHHHHHHhcceEEEecC
Q 008636 187 SDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSL---IDWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVCLRK 263 (558)
Q Consensus 187 ~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~ 263 (558)
.++.++++... + +..+|++.+........ ...++.++|++...++-+.. ....+++++..|+..+.++.
T Consensus 15 ~p~~~a~~~~~---~----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~ 86 (504)
T 1t5h_X 15 APDHCALAVPA---R----GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD-VVIAILALHRLGAVPALLNP 86 (504)
T ss_dssp CTTSEEEEETT---T----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH-HHHHHHHHHHHTCEEEEECT
T ss_pred CCCceEEEEcC---C----CceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH-HHHHHHHHHHhCcEEEecCC
Confidence 34566666432 1 24689998865554433 34578899999998887532 24667888899999998874
Q ss_pred -CCHHHHHHHHHHhCCcEEEe--hHHHHHHH
Q 008636 264 -FDAPTVFALIRKHGVTHMCG--APIVLNLL 291 (558)
Q Consensus 264 -~~~~~~~~~i~~~~~t~l~~--~p~~l~~l 291 (558)
..++++...+++.++..++. .+.....+
T Consensus 87 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 87 RLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp TSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred ccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 57888999999999999988 55544443
No 64
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=57.85 E-value=59 Score=32.35 Aligned_cols=96 Identities=8% Similarity=-0.015 Sum_probs=65.6
Q ss_pred CCCCceEEEC---------CccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhH--HHHHHHHhhcCcEEEecc
Q 008636 27 CDDCPSIIYN---------DTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAM--YELHFAVPMSGAIFNTIN 95 (558)
Q Consensus 27 ~p~~~a~~~~---------~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~v~l~ 95 (558)
.++.+|++.. +-.+|.+.+...+..+.. ..++.++|++...+|-.-.+ ...+++++..|+.+++.
T Consensus 158 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~- 233 (509)
T 3ivr_A 158 GAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVD---AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA- 233 (509)
T ss_dssp CTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEec-
Confidence 4566676541 146899988877666554 35789999999988865432 22333344445554443
Q ss_pred ccCChHHHHHHHhhcCccEEEEeCcChHHHHH
Q 008636 96 TRLDARTISIILKHSESKLVFVDHLSSSLLLE 127 (558)
Q Consensus 96 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 127 (558)
..+...+...+++.++.+++........+.+
T Consensus 234 -~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~ 264 (509)
T 3ivr_A 234 -KFDPAQAARDIEAHKVTVMAEFAPMLGNILD 264 (509)
T ss_dssp -SCCHHHHHHHHHHHTCCEEEEETTHHHHHHH
T ss_pred -ccCHHHHHHHHHHHCCcEEEecHHHHHHHHh
Confidence 6778899999999999999988776666554
No 65
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=56.77 E-value=91 Score=30.51 Aligned_cols=106 Identities=8% Similarity=0.009 Sum_probs=72.5
Q ss_pred CCCCceEEEccCCCCCCCceeeecHHHHHHHHHhccc---ccccCCCCEEEEecCchhhhhhhHHHHHHHhcceEEEecC
Q 008636 187 SDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLI---DWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVCLRK 263 (558)
Q Consensus 187 ~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~ 263 (558)
.++.++++.........-....+|++.+......... ..+. ++|++...++-... .+..+++++..|+..+.++.
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e-~~~~~lA~~~~G~v~vpl~~ 114 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLE-YVVAFLGALQAGRIAVPLSV 114 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEECS
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHH-HHHHHHHHHHhCcEEEeeCC
Confidence 4567777765421111113367899998655544443 3354 88999888876532 34567888899999998864
Q ss_pred ----CCHHHHHHHHHHhCCcEEEehHHHHHHHhcC
Q 008636 264 ----FDAPTVFALIRKHGVTHMCGAPIVLNLLSSS 294 (558)
Q Consensus 264 ----~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~ 294 (558)
...+++...+++.++..++..+.....+...
T Consensus 115 ~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 115 PQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp CCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHT
T ss_pred CCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHH
Confidence 3468889999999999999998877766554
No 66
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=55.90 E-value=40 Score=33.64 Aligned_cols=96 Identities=11% Similarity=0.052 Sum_probs=67.9
Q ss_pred CCCCceEEE--CC-------ccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchh--HHHHHHHHhhcCcEEEecc
Q 008636 27 CDDCPSIIY--ND-------TTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPA--MYELHFAVPMSGAIFNTIN 95 (558)
Q Consensus 27 ~p~~~a~~~--~~-------~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~v~l~ 95 (558)
.++.+|++. .+ ..+|.+.+...+..++..+ ++.++|++...+|-... ++..+++.+..|+..+...
T Consensus 153 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~ 229 (505)
T 3nyq_A 153 DDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG 229 (505)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS
T ss_pred CCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC
Confidence 456777654 12 4689999988877766554 67889998887775432 3345788889999988774
Q ss_pred ccCChHHHHHHHhhcCccEEEEeCcChHHHHH
Q 008636 96 TRLDARTISIILKHSESKLVFVDHLSSSLLLE 127 (558)
Q Consensus 96 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 127 (558)
..+.+.+...+ +.++.+++........+.+
T Consensus 230 -~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 230 -RFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp -SCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred -CCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 56666777777 6789998887766655544
No 67
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=54.21 E-value=74 Score=31.58 Aligned_cols=79 Identities=8% Similarity=-0.027 Sum_probs=60.7
Q ss_pred eecHHHHHHHHHhcc---cccccCCCCEEEEecCchhhhhhhHHHHHHHhcceEEEecC-CCHHHHHHHHHHhCCcEEEe
Q 008636 208 VQCYKAFFIIAVDSL---IDWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVCLRK-FDAPTVFALIRKHGVTHMCG 283 (558)
Q Consensus 208 ~~t~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~-~~~~~~~~~i~~~~~t~l~~ 283 (558)
.+|++.+........ ...++.++|++...++-+. .....+++++..|+..+.++. ...+++...+++.++..++.
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSV-EALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCH-HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH-HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 589988865554433 3447889999998888753 234667888999999998874 67889999999999999998
Q ss_pred hHHH
Q 008636 284 APIV 287 (558)
Q Consensus 284 ~p~~ 287 (558)
.+..
T Consensus 107 ~~~~ 110 (503)
T 4fuq_A 107 DPSK 110 (503)
T ss_dssp CGGG
T ss_pred Cchh
Confidence 7643
No 68
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=53.94 E-value=76 Score=32.25 Aligned_cols=94 Identities=14% Similarity=0.109 Sum_probs=68.7
Q ss_pred CCCCceEEEccCCCCCCCceeeecHHHHHHHHHhcc---cccccCCCCEEEEecCchhhhhhhHHHHHHHhcceEEEecC
Q 008636 187 SDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSL---IDWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVCLRK 263 (558)
Q Consensus 187 ~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~ 263 (558)
.++.++++..... | ....+|++.+........ ...++.++|++...++-+.. .+..+++++..|+..+.++.
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e-~~~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYD-FWYCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTH-HHHHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH-HHHHHHHHHhCCEEEEeCCc
Confidence 4667887765321 2 245689988865554333 34578999999998886532 34667888899999998874
Q ss_pred -CCHHHHHHHHHHhCCcEEEehH
Q 008636 264 -FDAPTVFALIRKHGVTHMCGAP 285 (558)
Q Consensus 264 -~~~~~~~~~i~~~~~t~l~~~p 285 (558)
..++++...+++.++..++..+
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEES
T ss_pred cCCHHHHHHHHHhcCCCEEEEec
Confidence 6789999999999999998754
No 69
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=53.38 E-value=78 Score=32.03 Aligned_cols=83 Identities=8% Similarity=0.057 Sum_probs=62.8
Q ss_pred eecHHHHHHHHHhcc---cccccCCCCEEEEecCchhhhhhhHHHHHHHhcceEEEecC-CCHHHHHHHHHHhCCcEEEe
Q 008636 208 VQCYKAFFIIAVDSL---IDWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVCLRK-FDAPTVFALIRKHGVTHMCG 283 (558)
Q Consensus 208 ~~t~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~-~~~~~~~~~i~~~~~t~l~~ 283 (558)
.+|++.+........ ...++.++|++...++-+. -....+++++..|+..+.++. ...+++...+++.++..++.
T Consensus 64 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~ 142 (563)
T 1amu_A 64 QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSI-DLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLT 142 (563)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEE
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEE
Confidence 589988865554433 3457889999998888653 234567888899999998874 67889999999999999998
Q ss_pred hHHHHHHH
Q 008636 284 APIVLNLL 291 (558)
Q Consensus 284 ~p~~l~~l 291 (558)
.+.....+
T Consensus 143 ~~~~~~~~ 150 (563)
T 1amu_A 143 QKHLVHLI 150 (563)
T ss_dssp CGGGHHHH
T ss_pred cCchhhhh
Confidence 87655443
No 70
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=51.96 E-value=53 Score=32.87 Aligned_cols=83 Identities=10% Similarity=-0.022 Sum_probs=62.5
Q ss_pred eecHHHHHHHHHhcc---cccccCCCCEEEEecCchhhhhhhHHHHHHHhcceEEEecC-CCHHHHHHHHHHhCCcEEEe
Q 008636 208 VQCYKAFFIIAVDSL---IDWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVCLRK-FDAPTVFALIRKHGVTHMCG 283 (558)
Q Consensus 208 ~~t~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~-~~~~~~~~~i~~~~~t~l~~ 283 (558)
.+|++.+........ ...++.++|++...++-+.. .....++++..|+..+.++. ..++++...+++.++..++.
T Consensus 48 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~ 126 (529)
T 2v7b_A 48 STTYGELEERARRFASALRTLGVHPEERILLVMLDTVA-LPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIA 126 (529)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTH-HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEE
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEe
Confidence 578888865554433 34578899999998887542 34567888899999988874 67889999999999999998
Q ss_pred hHHHHHHH
Q 008636 284 APIVLNLL 291 (558)
Q Consensus 284 ~p~~l~~l 291 (558)
.+.....+
T Consensus 127 ~~~~~~~~ 134 (529)
T 2v7b_A 127 SGALVQNV 134 (529)
T ss_dssp EGGGHHHH
T ss_pred chhhhhHH
Confidence 77655433
No 71
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=51.84 E-value=90 Score=31.04 Aligned_cols=99 Identities=6% Similarity=-0.029 Sum_probs=67.0
Q ss_pred CCCCceEEEC---------CccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhH-HHHHHHHhhcCcEEEeccc
Q 008636 27 CDDCPSIIYN---------DTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAM-YELHFAVPMSGAIFNTINT 96 (558)
Q Consensus 27 ~p~~~a~~~~---------~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~ 96 (558)
.++.+|++.. +..+|.+.+...+..+.... ..++.+++++....+-+... +..+++++..|+..+..+.
T Consensus 143 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 221 (521)
T 3l8c_A 143 KGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA-AFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPK 221 (521)
T ss_dssp CTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT-TTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCG
T ss_pred CCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc-ccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCH
Confidence 3566776541 14689988876554333221 25678888888877766443 4556778888998887765
Q ss_pred c--CChHHHHHHHhhcCccEEEEeCcChHHHH
Q 008636 97 R--LDARTISIILKHSESKLVFVDHLSSSLLL 126 (558)
Q Consensus 97 ~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 126 (558)
. .....+...+.+.++.++.........+.
T Consensus 222 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 253 (521)
T 3l8c_A 222 ELVADFKQLFTTIAQLPVGIWTSTPSFADMAM 253 (521)
T ss_dssp GGTTCHHHHHHHHHHSCCSEEEECHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHh
Confidence 4 26677888999999999988765554443
No 72
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=51.09 E-value=37 Score=34.50 Aligned_cols=97 Identities=11% Similarity=0.032 Sum_probs=69.4
Q ss_pred CCCCceEEEC---------CccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchh-HHHHHHHHhhcCcEEEeccc
Q 008636 27 CDDCPSIIYN---------DTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPA-MYELHFAVPMSGAIFNTINT 96 (558)
Q Consensus 27 ~p~~~a~~~~---------~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~v~l~~ 96 (558)
.|+.+|++.. +..+|.+.+..... .....++.++|++..++|-+.+ ....+++.+..|+..+..+.
T Consensus 212 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 287 (570)
T 4gr5_A 212 GPEDVACVMFTSGSTGRPKGVMSPHRALTGTYL----GQDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSG 287 (570)
T ss_dssp CTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHS----SCCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSS
T ss_pred CCCCeEEEEECCcCCCCCeEEEEecHHHHHHHH----hhhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCC
Confidence 4677787652 24688887754322 1223578899999998887543 45567888889998887764
Q ss_pred -cCChHHHHHHHhhcCccEEEEeCcChHHHHH
Q 008636 97 -RLDARTISIILKHSESKLVFVDHLSSSLLLE 127 (558)
Q Consensus 97 -~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 127 (558)
......+...+++.++.++.........+.+
T Consensus 288 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 319 (570)
T 4gr5_A 288 QNPDPLEIGELVARHGVTMLQLSASLFNFLVD 319 (570)
T ss_dssp SSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence 4567789999999999999988766665544
No 73
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=51.02 E-value=1e+02 Score=31.85 Aligned_cols=94 Identities=16% Similarity=0.120 Sum_probs=67.5
Q ss_pred CCCceEEEccCCCCCCCceeeecHHHHHHHHHhcc---cccccCCCCEEEEecCchhhhhhhHHHHHHHhcceEEEec-C
Q 008636 188 DLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSL---IDWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVCLR-K 263 (558)
Q Consensus 188 ~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~-~ 263 (558)
++.++++... ..+| ..-.+|++.+........ ...++.++|++...+|.... ....+++++..|+..+.+. .
T Consensus 90 pd~~Al~~~~-~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e-~vva~lA~~~~Gav~vpl~~~ 165 (652)
T 1pg4_A 90 GDRTAIIWEG-DDTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPE-AAVAMLACARIGAVHSVIFGG 165 (652)
T ss_dssp TTSEEEEEEC-SSTT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEECCTT
T ss_pred CCceEEEEEc-CCCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHcCcEEEecCCC
Confidence 4567776432 2122 235689998865554433 34578899999999887543 3466788889999988876 4
Q ss_pred CCHHHHHHHHHHhCCcEEEehH
Q 008636 264 FDAPTVFALIRKHGVTHMCGAP 285 (558)
Q Consensus 264 ~~~~~~~~~i~~~~~t~l~~~p 285 (558)
+.++++...+++.++.+++...
T Consensus 166 ~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 166 FSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp SCHHHHHHHHHHHTCSEEEEES
T ss_pred CCHHHHHHHHHhcCCCEEEEcC
Confidence 7889999999999999988754
No 74
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=50.65 E-value=84 Score=32.60 Aligned_cols=96 Identities=13% Similarity=0.083 Sum_probs=68.7
Q ss_pred CCCCceEEEccCCCCCCCceeeecHHHHHHHHHh---ccc-ccccCCCCEEEEecCchhhhhhhHHHHHHHhcceEEEec
Q 008636 187 SDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVD---SLI-DWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVCLR 262 (558)
Q Consensus 187 ~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~---~~~-~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~ 262 (558)
.++.+|++.... .+| ....+|++.+...... ... ..++.++|++...+|.... ....+++++..|+..+.+.
T Consensus 95 ~pd~~Al~~~~~-~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e-~v~a~lA~~~~Gav~vpl~ 170 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPE-AIITLLAISRIGAIHSVVF 170 (663)
T ss_dssp CTTSEEEEEECS-STT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHH-HHHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH-HHHHHHHHHHcCCEEEeeC
Confidence 355677765422 122 2346899888654443 333 5678899999999987542 3456788889999988876
Q ss_pred -CCCHHHHHHHHHHhCCcEEEehHH
Q 008636 263 -KFDAPTVFALIRKHGVTHMCGAPI 286 (558)
Q Consensus 263 -~~~~~~~~~~i~~~~~t~l~~~p~ 286 (558)
.+.++.+...+++.++.+++....
T Consensus 171 ~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 171 AGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCCHHHHHHHHHhcCCeEEEEccc
Confidence 478899999999999999988653
No 75
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=49.39 E-value=76 Score=29.74 Aligned_cols=90 Identities=10% Similarity=0.114 Sum_probs=61.7
Q ss_pred CCceEEECC--ccccHHHHHHHHHHHHHHHHhCC-CCCCCEEEEEcCCchhHHHHHHHHhhcCcEEEeccccCChHHHHH
Q 008636 29 DCPSIIYND--TTYTWSQTYRRCLQLASSLSSFG-INPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISI 105 (558)
Q Consensus 29 ~~~a~~~~~--~~~Ty~~l~~~v~~la~~L~~~G-v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 105 (558)
-++.+-.++ .+=||++= -+..+-..+.+.| +++|.+..+....+=.-+.+.++|.++|..+..+=|...+.....
T Consensus 50 ~~IylK~E~lnptGSfK~R--gA~~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~ 127 (344)
T 3vc3_A 50 AYVAVKQEMMQPTASIADR--PAYAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRV 127 (344)
T ss_dssp SEEEEEEGGGSTTSBTTHH--HHHHHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred CEEEEEecCCCCCCCcHHH--HHHHHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHH
Confidence 345555544 34455531 1222223344445 578877677777888888889999999988888777776667778
Q ss_pred HHhhcCccEEEEeCc
Q 008636 106 ILKHSESKLVFVDHL 120 (558)
Q Consensus 106 ~l~~~~~~~ii~~~~ 120 (558)
.++.+++++++++..
T Consensus 128 ~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 128 TMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHcCCEEEEECCC
Confidence 899999999998753
No 76
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=48.59 E-value=40 Score=34.72 Aligned_cols=97 Identities=14% Similarity=0.112 Sum_probs=69.0
Q ss_pred CCCCceEEEC--C-------ccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchh-HHHHHHHHhhcCcEEEecc-
Q 008636 27 CDDCPSIIYN--D-------TTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPA-MYELHFAVPMSGAIFNTIN- 95 (558)
Q Consensus 27 ~p~~~a~~~~--~-------~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~v~l~- 95 (558)
.|+.+|++.. + ..+|.+.+...+. .....++.++|++...++-+.+ .+..+++.+..|+..+..+
T Consensus 162 ~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 237 (620)
T 4dg8_A 162 AADQIAYINFSSGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDL 237 (620)
T ss_dssp CTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCS
T ss_pred CCCCeEEEEECCCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCcc
Confidence 3677776641 1 4688887754332 2233578899999999887655 3445788888898887764
Q ss_pred ccCChHHHHHHHhhcCccEEEEeCcChHHHHH
Q 008636 96 TRLDARTISIILKHSESKLVFVDHLSSSLLLE 127 (558)
Q Consensus 96 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 127 (558)
...+...+...+++.++.++.........+.+
T Consensus 238 ~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~ 269 (620)
T 4dg8_A 238 GPLDPGVLRQLIGERGADSAWLTASLFNTLVD 269 (620)
T ss_dssp SSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCcEEEccHHHHHHHHh
Confidence 24578889999999999999987766665544
No 77
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=46.91 E-value=89 Score=34.24 Aligned_cols=94 Identities=16% Similarity=0.133 Sum_probs=69.3
Q ss_pred CCCCceEEEccCCCCCCCceeeecHHHHHHHHHhcc---cccccCCCCEEEEecCchhhhhhhHHHHHHHhcceEEEecC
Q 008636 187 SDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSL---IDWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVCLRK 263 (558)
Q Consensus 187 ~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~ 263 (558)
.++.++++...+| -.+|++.+........ ...++.++|++...++-+. -.+..+++++..|+..+.++.
T Consensus 74 ~pd~~Al~~~~~~-------~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~-e~~v~~lA~~~~Ga~~vpl~~ 145 (979)
T 3tsy_A 74 FATKPCLINGPTG-------HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCP-EFVLSFLAASFRGATATAANP 145 (979)
T ss_dssp TTTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCH-HHHHHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEECCCC-------cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCH-HHHHHHHHHHHcCCEEEeeCC
Confidence 4667777653322 3578888865554433 3457889999999988753 234667888999999998874
Q ss_pred -CCHHHHHHHHHHhCCcEEEehHHHH
Q 008636 264 -FDAPTVFALIRKHGVTHMCGAPIVL 288 (558)
Q Consensus 264 -~~~~~~~~~i~~~~~t~l~~~p~~l 288 (558)
..++++...+++.++.+++..+...
T Consensus 146 ~~~~~~l~~~l~~~~~~~vi~~~~~~ 171 (979)
T 3tsy_A 146 FFTPAEIAKQAKASNTKLIITEARYV 171 (979)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECSTTT
T ss_pred CCCHHHHHHHHHHcCCeEEEEChHHH
Confidence 6789999999999999999876544
No 78
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=42.97 E-value=1.1e+02 Score=28.31 Aligned_cols=65 Identities=22% Similarity=0.168 Sum_probs=45.5
Q ss_pred HHhCC-CCCCCEEEEEcCCchhHHHHHHHHhhcCcEEEeccccCChHHHHHHHhhcCccEEEEeCc
Q 008636 56 LSSFG-INPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHL 120 (558)
Q Consensus 56 L~~~G-v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 120 (558)
+.+.| +++|....+....+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++.+
T Consensus 57 a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 57 AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 34556 456753444455666777777888899988777666555555567789999999998753
No 79
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=40.50 E-value=1.1e+02 Score=29.55 Aligned_cols=64 Identities=20% Similarity=0.169 Sum_probs=48.0
Q ss_pred HHhCCC-CCCCEEEEEcCCchhHHHHHHHHhhcCcEEEeccccCChHHHHHHHhhcCccEEEEeC
Q 008636 56 LSSFGI-NPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDH 119 (558)
Q Consensus 56 L~~~Gv-~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 119 (558)
..+.|. ++|....+....+=.-..+.++|.+.|..++.+=|...+..-...++..++++++++.
T Consensus 165 A~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 165 AEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 345664 6775555556667778888888999998887776766566667788999999999974
No 80
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=37.08 E-value=1.6e+02 Score=26.94 Aligned_cols=88 Identities=7% Similarity=0.020 Sum_probs=53.9
Q ss_pred CceEEECC--ccccHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEcCCchhHHHHHHHHhhcCcEEEeccccCChHHHHHH
Q 008636 30 CPSIIYND--TTYTWSQTYRRCLQLASSLSSFGI-NPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISII 106 (558)
Q Consensus 30 ~~a~~~~~--~~~Ty~~l~~~v~~la~~L~~~Gv-~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 106 (558)
++.+-.+. .+-++++-- +..+...+.+.|. ++|+.|.. ...+=.-..+.++|.+.|..++.+-|...+..-...
T Consensus 32 ~i~~K~E~~~ptgSfK~R~--a~~~l~~a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~ 108 (313)
T 2q3b_A 32 DIVAKLEFFNPANSVKDRI--GVAMLQAAEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRML 108 (313)
T ss_dssp EEEEEEGGGSTTSBTHHHH--HHHHHHHHHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHH
T ss_pred EEEEEehhcCCCCcHHHHH--HHHHHHHHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHH
Confidence 34443433 344555432 2233333445554 66776655 555666666677778899887776665544555667
Q ss_pred HhhcCccEEEEeCc
Q 008636 107 LKHSESKLVFVDHL 120 (558)
Q Consensus 107 l~~~~~~~ii~~~~ 120 (558)
++..++++++++..
T Consensus 109 ~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 109 LRAYGAELILTPGA 122 (313)
T ss_dssp HHHTTCEEEEECGG
T ss_pred HHHCCCEEEEeCCC
Confidence 88999999998763
No 81
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=36.86 E-value=1.6e+02 Score=26.83 Aligned_cols=89 Identities=10% Similarity=0.026 Sum_probs=54.1
Q ss_pred CCceEEECC--ccccHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEcCCchhHHHHHHHHhhcCcEEEeccccCChHHHHH
Q 008636 29 DCPSIIYND--TTYTWSQTYRRCLQLASSLSSFGI-NPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISI 105 (558)
Q Consensus 29 ~~~a~~~~~--~~~Ty~~l~~~v~~la~~L~~~Gv-~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 105 (558)
.++.+-.+. .+-+|++--. ..+...+.+.|. ++|+.|.. ...+=.-..+.++|...|..++.+-|...+..-..
T Consensus 29 ~~i~~K~E~~~ptgSfK~R~a--~~~l~~a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~ 105 (308)
T 2egu_A 29 ADVYLKLEFMNPGSSVKDRIA--LAMIEAAEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRN 105 (308)
T ss_dssp CEEEEEEGGGSTTSBTHHHHH--HHHHHHHHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHH
T ss_pred CEEEEEecccCCCCChHHHHH--HHHHHHHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHH
Confidence 344554433 3445554322 222333444554 66665544 55566666777778889988777666554455566
Q ss_pred HHhhcCccEEEEeCc
Q 008636 106 ILKHSESKLVFVDHL 120 (558)
Q Consensus 106 ~l~~~~~~~ii~~~~ 120 (558)
.++..++++++++..
T Consensus 106 ~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 106 LLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHcCCEEEEECCC
Confidence 779999999998764
No 82
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=36.70 E-value=76 Score=30.09 Aligned_cols=59 Identities=14% Similarity=0.077 Sum_probs=35.9
Q ss_pred HHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCcEEEecccc-----CChHHHHHHHhhcC--ccEEEE
Q 008636 56 LSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTR-----LDARTISIILKHSE--SKLVFV 117 (558)
Q Consensus 56 L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~--~~~ii~ 117 (558)
|...++++||.|.+-.+..... .-++...|+.++.++.+ .+.+.++..+..-+ +++|+.
T Consensus 70 l~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~ 135 (377)
T 3ju7_A 70 IQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVP 135 (377)
T ss_dssp HHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECC
T ss_pred HHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEE
Confidence 3444678899887766654433 33455678877766543 35667777664334 666664
No 83
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=35.14 E-value=2.6e+02 Score=25.36 Aligned_cols=65 Identities=17% Similarity=0.127 Sum_probs=44.2
Q ss_pred HHHhCC-CCCCC--EEEEEcCCchhHHHHHHHHhhcCcEEEeccccCChHHHHHHHhhcCccEEEEeCc
Q 008636 55 SLSSFG-INPGH--VVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHL 120 (558)
Q Consensus 55 ~L~~~G-v~~gd--~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 120 (558)
.+.+.| +++|+ .|. ....+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 50 ~a~~~g~~~~g~~~~vv-~assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 50 DAEERGILRPGSGQVIV-EPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHHHTTSCCTTSCCEEE-ESCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHHcCCCCCCCccEEE-EeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 344445 46666 443 345556666677778899987777666554555666788999999998765
No 84
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=34.74 E-value=1.1e+02 Score=28.40 Aligned_cols=77 Identities=9% Similarity=0.081 Sum_probs=51.9
Q ss_pred cccHHHHHHHHHHHH---HHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCcEEEeccccCChHHHHHHHhhcCccEE
Q 008636 39 TYTWSQTYRRCLQLA---SSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLV 115 (558)
Q Consensus 39 ~~Ty~~l~~~v~~la---~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 115 (558)
.+++.+......... ..|...++++|++|+|+..-+.-.+++++|....|+.++.++.+ .+. ..+.+..++..+
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~ 212 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVT 212 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEE
T ss_pred CCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEE
Confidence 567766544333322 33455689999999999887777788888877778777666543 333 455677888877
Q ss_pred EEe
Q 008636 116 FVD 118 (558)
Q Consensus 116 i~~ 118 (558)
|..
T Consensus 213 i~~ 215 (348)
T 4eez_A 213 INS 215 (348)
T ss_dssp EEC
T ss_pred EeC
Confidence 753
No 85
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=34.32 E-value=2.1e+02 Score=25.93 Aligned_cols=87 Identities=10% Similarity=0.089 Sum_probs=53.7
Q ss_pred CceEEECC--ccccHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEcCCchhHHHHHHHHhhcCcEEEeccccCChHHHHHH
Q 008636 30 CPSIIYND--TTYTWSQTYRRCLQLASSLSSFGI-NPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISII 106 (558)
Q Consensus 30 ~~a~~~~~--~~~Ty~~l~~~v~~la~~L~~~Gv-~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 106 (558)
++.+-.+. .+-+|++-- +..+...+.+.|. ++|+.|...+ .+=.-..+.++|.+.|..++.+-|...+..-...
T Consensus 26 ~v~~K~E~~~ptGSfK~R~--a~~~i~~a~~~g~~~~g~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~ 102 (303)
T 2v03_A 26 EVWLKLEGNNPAGSVKDRA--ALSMIVEAEKRGEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAA 102 (303)
T ss_dssp EEEEEEGGGSTTSBTHHHH--HHHHHHHHHHTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHH
T ss_pred EEEEEeccCCCCCCcHHHH--HHHHHHHHHHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHH
Confidence 44444433 334455432 2222333444553 6777666555 4555666677778999888777666555556677
Q ss_pred HhhcCccEEEEeC
Q 008636 107 LKHSESKLVFVDH 119 (558)
Q Consensus 107 l~~~~~~~ii~~~ 119 (558)
++..++++++++.
T Consensus 103 ~~~~Ga~v~~~~~ 115 (303)
T 2v03_A 103 MRAYGAELILVTK 115 (303)
T ss_dssp HHHTTCEEEEECT
T ss_pred HHHcCCEEEEECC
Confidence 8999999999976
No 86
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=33.86 E-value=1.5e+02 Score=27.66 Aligned_cols=64 Identities=16% Similarity=0.054 Sum_probs=43.5
Q ss_pred HHhCCC-CCCCEEEEEcCCchhHHHHHHHHhhcCcEEEeccccCChHHHHHHHhhcCccEEEEeCc
Q 008636 56 LSSFGI-NPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHL 120 (558)
Q Consensus 56 L~~~Gv-~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 120 (558)
+.+.|. ++|+.|...+. +=.-..+.++|...|..++.+-|...+..-...++..++++++++..
T Consensus 69 a~~~g~~~~g~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 69 AIKDGRLKPGMEIIESTS-GNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp HHHHTSSCTTCEEEEECS-SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 334453 67776655543 55566666777789987777666555555566789999999998763
No 87
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=33.80 E-value=1.9e+02 Score=23.40 Aligned_cols=86 Identities=19% Similarity=0.121 Sum_probs=50.2
Q ss_pred hhhhhhhHHHHHHH-hcceEEEec-CCCHHHHHHHHHHhCCcEEEehH------HHHHHHhcCccccCCCCceEEEEecC
Q 008636 240 FHNNGWSFTWGAAV-VGATNVCLR-KFDAPTVFALIRKHGVTHMCGAP------IVLNLLSSSPEAKQLDRPVRILTAGS 311 (558)
Q Consensus 240 ~~~~g~~~~~~~l~-~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p------~~l~~l~~~~~~~~~~~l~~v~~~g~ 311 (558)
.|..|...+...+- .|-.++... ..+++.+.+.+.+++++++..+- ..+..+.+..+....... .+++||.
T Consensus 30 ~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~~g~~~i-~v~vGG~ 108 (161)
T 2yxb_A 30 GHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELGADDI-PVVLGGT 108 (161)
T ss_dssp SCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTTCTTS-CEEEEEC
T ss_pred ccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHhcCCCCC-EEEEeCC
Confidence 57777655555554 466666554 46789999999999999886543 223333333223222333 3667775
Q ss_pred CCChhhhHHhhhcCCe
Q 008636 312 PPPAPVLLRTESLGFI 327 (558)
Q Consensus 312 ~l~~~~~~~~~~~~~~ 327 (558)
.. .+....+++.|+-
T Consensus 109 ~~-~~~~~~l~~~G~d 123 (161)
T 2yxb_A 109 IP-IPDLEPLRSLGIR 123 (161)
T ss_dssp CC-HHHHHHHHHTTCC
T ss_pred Cc-hhcHHHHHHCCCc
Confidence 54 4444455566654
No 88
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=33.73 E-value=1.3e+02 Score=30.21 Aligned_cols=84 Identities=11% Similarity=-0.018 Sum_probs=62.1
Q ss_pred eeecHHHHHHHHHhccc---ccccCCCCEEEEecCchhhhhhhHHHHHHHhcceEEEecC-CC-------HHHHHHHHHH
Q 008636 207 VVQCYKAFFIIAVDSLI---DWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVCLRK-FD-------APTVFALIRK 275 (558)
Q Consensus 207 v~~t~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~~~~~~-~~-------~~~~~~~i~~ 275 (558)
-.+|++.+......... ..++.+++++...++-+. -.+..+++++..|+..+.++. .. .+++...++.
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~ 126 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSS-EFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLAS 126 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH-HHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHh
Confidence 46899988655544433 457889999999888754 234667888999999998864 33 5788889999
Q ss_pred hCCcEEEehHHHHHHH
Q 008636 276 HGVTHMCGAPIVLNLL 291 (558)
Q Consensus 276 ~~~t~l~~~p~~l~~l 291 (558)
.++..++........+
T Consensus 127 ~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 127 CQPAAIITGDEWLPLV 142 (576)
T ss_dssp HCCSEEEECGGGHHHH
T ss_pred cCCCEEEecHHHHHHH
Confidence 9999999877655443
No 89
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=33.58 E-value=80 Score=22.03 Aligned_cols=47 Identities=30% Similarity=0.236 Sum_probs=32.6
Q ss_pred hHHHHHHHhcCCCcceeEEEeeeCCCCCceeEEEEEecCCCCCCCCCCCHHHHHHHHHhcCC
Q 008636 456 STEIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIP 517 (558)
Q Consensus 456 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~ 517 (558)
..++++.|.+.|+|.+|..+..+.. ..+.+.. .+.+++.+.+.+.+.
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~~D-----~ll~v~~----------~d~~~l~~~i~~~l~ 61 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGEYD-----LIVKVET----------DTLKDLDQFITEKIR 61 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSSCS-----EEEEEEE----------SSHHHHHHHHHTTGG
T ss_pred HHHHHHHHhCCCCeeEEEEEcccCC-----EEEEEEE----------CCHHHHHHHHHHHhc
Confidence 4789999999999999998754322 3344443 466778887765543
No 90
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=33.01 E-value=1.1e+02 Score=28.30 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=34.9
Q ss_pred CCCCCCEEEEEcCCch------hHHHHHHHHh-hcCcEEEeccccC--------C----hHHHHHHHhhcCccEEEEeC
Q 008636 60 GINPGHVVSVIAPNIP------AMYELHFAVP-MSGAIFNTINTRL--------D----ARTISIILKHSESKLVFVDH 119 (558)
Q Consensus 60 Gv~~gd~V~i~~~~~~------~~~~~~lA~~-~~G~~~v~l~~~~--------~----~~~l~~~l~~~~~~~ii~~~ 119 (558)
-+++||+|+|++|.+. +.+-.....+ ..|..++.-+.-. + +++|...+.+-..++|+|..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 4789999999999753 2222222222 3476665443211 1 33466667777777887754
No 91
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=31.51 E-value=2.1e+02 Score=26.42 Aligned_cols=64 Identities=13% Similarity=0.129 Sum_probs=46.1
Q ss_pred HHhCC-CCCCCEEEEEcCCchhHHHHHHHHhhcCcEEEeccccCChHHHHHHHhhcCccEEEEeCc
Q 008636 56 LSSFG-INPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHL 120 (558)
Q Consensus 56 L~~~G-v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 120 (558)
+.+.| +++++.|... ..+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 64 a~~~g~l~~~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 64 AEADGLLRPGATILEP-TSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp HHHTTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred HHHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 44555 4677776554 4466667777788888988777766665556677789999999999763
No 92
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=31.06 E-value=2e+02 Score=27.07 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=34.1
Q ss_pred CCCCCCCEEEEEcCCchhHHHHHHHHhhcCcEEEecccc----CChHHHHHHHhhc--CccEEEEe
Q 008636 59 FGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTR----LDARTISIILKHS--ESKLVFVD 118 (558)
Q Consensus 59 ~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~--~~~~ii~~ 118 (558)
.++++||.|++..+....... ++...|+.++.++.+ .+.+.++..++.. ++++++..
T Consensus 67 l~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~ 129 (394)
T 1o69_A 67 AGVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILT 129 (394)
T ss_dssp TTCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEE
T ss_pred cCCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEE
Confidence 346778888777766555432 333467666666543 3556777777654 46666654
No 93
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=31.01 E-value=1e+02 Score=28.90 Aligned_cols=56 Identities=9% Similarity=0.112 Sum_probs=40.4
Q ss_pred CEEEEEcCCchhHHHHHHHHhhcCcEEEeccccCChHHHHHHHhhcCccEEEEeCcC
Q 008636 65 HVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHLS 121 (558)
Q Consensus 65 d~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~ 121 (558)
+.|.. ...+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++...
T Consensus 77 ~~vv~-~SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~ 132 (346)
T 3l6b_A 77 KAVVT-HSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSD 132 (346)
T ss_dssp SCEEE-ECSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSSH
T ss_pred CEEEE-eCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCH
Confidence 44433 345666677778888899877777666655666778899999999997654
No 94
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=30.49 E-value=1.5e+02 Score=27.49 Aligned_cols=75 Identities=13% Similarity=-0.002 Sum_probs=47.7
Q ss_pred ccccHHHHHHHHHHH---HHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCcEEEeccccCChHHHHHHHhhcCccE
Q 008636 38 TTYTWSQTYRRCLQL---ASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKL 114 (558)
Q Consensus 38 ~~~Ty~~l~~~v~~l---a~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 114 (558)
..+++.+........ -..|.+.++++|++|+|...-++-.+++++|- ..|+.++.+..+. +.++ ++++.+++.
T Consensus 148 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~~--~~~~-~~~~lGa~~ 223 (348)
T 3two_A 148 KNAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARNE--HKKQ-DALSMGVKH 223 (348)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSSS--TTHH-HHHHTTCSE
T ss_pred CCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCH--HHHH-HHHhcCCCe
Confidence 356776654222211 13455668999999999987666777777776 4588766665443 2332 456678887
Q ss_pred EE
Q 008636 115 VF 116 (558)
Q Consensus 115 ii 116 (558)
++
T Consensus 224 v~ 225 (348)
T 3two_A 224 FY 225 (348)
T ss_dssp EE
T ss_pred ec
Confidence 77
No 95
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=29.38 E-value=2.5e+02 Score=25.12 Aligned_cols=57 Identities=14% Similarity=0.066 Sum_probs=43.3
Q ss_pred hHHHHHhhcCCCCceEEECC------ccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHH
Q 008636 18 GFIERAATACDDCPSIIYND------TTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMY 78 (558)
Q Consensus 18 ~~l~~~a~~~p~~~a~~~~~------~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~ 78 (558)
+.+++..+.-|+...+.+.+ ...|..++.+.+.+.+.+|.+.|. ...+++.|+...+
T Consensus 19 tv~~~i~~~lP~~~~iy~~D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~----~~IVIACNTa~~~ 81 (269)
T 3ist_A 19 TVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGI----KMLVIACNTATAA 81 (269)
T ss_dssp HHHHHHHHHCTTCCEEEEECGGGCCCTTSCHHHHHHHHHHHHHHHHHTTC----SEEEECCHHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCCCccHH
Confidence 34666666789888877644 478999999999999999999765 3666666776654
No 96
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=29.37 E-value=1.4e+02 Score=28.36 Aligned_cols=61 Identities=8% Similarity=0.080 Sum_probs=35.6
Q ss_pred CCCCCCCEEEEEcCCchh------HHHHHHHHh-hcCcEEEeccccC--------C----hHHHHHHHhhcCccEEEEeC
Q 008636 59 FGINPGHVVSVIAPNIPA------MYELHFAVP-MSGAIFNTINTRL--------D----ARTISIILKHSESKLVFVDH 119 (558)
Q Consensus 59 ~Gv~~gd~V~i~~~~~~~------~~~~~lA~~-~~G~~~v~l~~~~--------~----~~~l~~~l~~~~~~~ii~~~ 119 (558)
.-+++||+|+|++|.+.- .+-...+.+ ..|..++.-+... + +++|...+.+-.+++|+|..
T Consensus 38 ~~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 38 APLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 358999999999998742 222223333 3477766443211 1 23355566666777777754
No 97
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=29.05 E-value=86 Score=35.70 Aligned_cols=97 Identities=10% Similarity=0.102 Sum_probs=68.8
Q ss_pred CCCCceEEE--CC-------ccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhH-HHHHHHHhhcCcEEEeccc
Q 008636 27 CDDCPSIIY--ND-------TTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAM-YELHFAVPMSGAIFNTINT 96 (558)
Q Consensus 27 ~p~~~a~~~--~~-------~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~ 96 (558)
.|+.+|++. .| ..+|.+.+... .......++.++|+++.+.+-+.+. +.-+++.+..|+..+..++
T Consensus 605 ~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~ 680 (1304)
T 2vsq_A 605 DPNDPAYIMYTSGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADE 680 (1304)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCG
T ss_pred CCCCeEEEEeCCCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECCh
Confidence 467777654 12 45888887542 2222335888999999888877654 3457788888999888776
Q ss_pred c--CChHHHHHHHhhcCccEEEEeCcChHHHHH
Q 008636 97 R--LDARTISIILKHSESKLVFVDHLSSSLLLE 127 (558)
Q Consensus 97 ~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 127 (558)
. .+...+...+++.++.++.........+.+
T Consensus 681 ~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~ 713 (1304)
T 2vsq_A 681 HTLLDTERLTDLILQENVNVMFATTALFNLLTD 713 (1304)
T ss_dssp GGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHh
Confidence 4 467889999999999999887766555543
No 98
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=28.83 E-value=2.1e+02 Score=23.54 Aligned_cols=70 Identities=13% Similarity=0.082 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCcEEEeccccCChHH---HHHHHhhcCccEEEEeC
Q 008636 48 RCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDART---ISIILKHSESKLVFVDH 119 (558)
Q Consensus 48 ~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~---l~~~l~~~~~~~ii~~~ 119 (558)
+...+...|.+.+ ++..++|+++.....-.+.-.+-..|..+..++.+.+..+ +...++..+.+++|+++
T Consensus 32 K~~~L~~ll~~~~--~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~ 104 (185)
T 2jgn_A 32 KRSFLLDLLNATG--KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 104 (185)
T ss_dssp HHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC
T ss_pred HHHHHHHHHHhcC--CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 4455666666643 5677888888765544444444556777888887776544 33444556777777764
No 99
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=28.21 E-value=95 Score=21.59 Aligned_cols=46 Identities=7% Similarity=-0.058 Sum_probs=32.2
Q ss_pred ccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCcE
Q 008636 38 TTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAI 90 (558)
Q Consensus 38 ~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 90 (558)
..+.+.++.+ .+.+.+..+++.|.++|..+.....+...+...|..
T Consensus 22 ~~ip~~~l~~-------~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 22 INIPLKEVKE-------RIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp EECCHHHHHH-------HHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred EEcCHHHHHH-------HHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 4566666554 344446677889999999888777777777777753
No 100
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=28.09 E-value=38 Score=30.43 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=20.9
Q ss_pred HHHHHHHHhCCCCCCCEEEEEcCC
Q 008636 50 LQLASSLSSFGINPGHVVSVIAPN 73 (558)
Q Consensus 50 ~~la~~L~~~Gv~~gd~V~i~~~~ 73 (558)
..|...|+++||++||.|.|++.=
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl 41 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSL 41 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECT
T ss_pred HHHHHHHHHcCCCCCCEEEEEech
Confidence 467788999999999999999874
No 101
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=27.57 E-value=1.9e+02 Score=26.74 Aligned_cols=77 Identities=9% Similarity=0.104 Sum_probs=49.6
Q ss_pred ccccHHHHHHHHHH--H-HHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCcEEEeccccCChHHHHHHHhhcCccE
Q 008636 38 TTYTWSQTYRRCLQ--L-ASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKL 114 (558)
Q Consensus 38 ~~~Ty~~l~~~v~~--l-a~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 114 (558)
..+++.+....... . -..|...++++|++|+|...-+.-.+++++|-. .|+.++.++. +.+.++ ++++.+++.
T Consensus 138 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~-~Ga~Vi~~~~--~~~~~~-~~~~lGa~~ 213 (340)
T 3s2e_A 138 DKVGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYARA-MGLRVAAVDI--DDAKLN-LARRLGAEV 213 (340)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHHH-TTCEEEEEES--CHHHHH-HHHHTTCSE
T ss_pred CCCCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeC--CHHHHH-HHHHcCCCE
Confidence 35777665432221 1 234555689999999998876677777777764 5887666543 344443 567788887
Q ss_pred EEEe
Q 008636 115 VFVD 118 (558)
Q Consensus 115 ii~~ 118 (558)
++..
T Consensus 214 ~i~~ 217 (340)
T 3s2e_A 214 AVNA 217 (340)
T ss_dssp EEET
T ss_pred EEeC
Confidence 7753
No 102
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=27.23 E-value=1.9e+02 Score=27.92 Aligned_cols=61 Identities=13% Similarity=0.052 Sum_probs=34.7
Q ss_pred EEEcCCchhHHH-HHHHHhhcCcEEEeccccCChH--HHHHHHhhcCccEEEEeCcChHHHHHH
Q 008636 68 SVIAPNIPAMYE-LHFAVPMSGAIFNTINTRLDAR--TISIILKHSESKLVFVDHLSSSLLLEV 128 (558)
Q Consensus 68 ~i~~~~~~~~~~-~~lA~~~~G~~~v~l~~~~~~~--~l~~~l~~~~~~~ii~~~~~~~~~~~~ 128 (558)
+++..++.+.+. ++.++.+.|-.++..++.+... .+...++..+.+++.++......+.+.
T Consensus 100 ~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~a 163 (430)
T 3ri6_A 100 VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHA 163 (430)
T ss_dssp EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHh
Confidence 455556665544 3445566676666555655432 223366777888888776544444443
No 103
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=27.15 E-value=2.8e+02 Score=23.37 Aligned_cols=94 Identities=14% Similarity=0.095 Sum_probs=0.0
Q ss_pred CCCCEEEEecCc-hhhhhhhHHHHHHHh-cceEEEec-CCCHHHHHHHHHHhCCcEEEeh------HHHHHHHhcCcccc
Q 008636 228 PKQSVLLWTLPM-FHNNGWSFTWGAAVV-GATNVCLR-KFDAPTVFALIRKHGVTHMCGA------PIVLNLLSSSPEAK 298 (558)
Q Consensus 228 ~~~~~~~~~~p~-~~~~g~~~~~~~l~~-g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~------p~~l~~l~~~~~~~ 298 (558)
..+.+++.+.+- .|..|...+...+-. |..++... ...++.+.+.+++++++++..+ ...+..+.+..+..
T Consensus 87 ~~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~ 166 (210)
T 1y80_A 87 SVGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDALIAA 166 (210)
T ss_dssp CCCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHhc
Q ss_pred CCCCceEEEEecCCCChhhhHHh
Q 008636 299 QLDRPVRILTAGSPPPAPVLLRT 321 (558)
Q Consensus 299 ~~~~l~~v~~~g~~l~~~~~~~~ 321 (558)
.+..--.+++||..++++....+
T Consensus 167 ~~~~~~~v~vGG~~~~~~~~~~~ 189 (210)
T 1y80_A 167 GLRDRVKVIVGGAPLSQDFADEI 189 (210)
T ss_dssp TCGGGCEEEEESTTCCHHHHHHH
T ss_pred CCCCCCeEEEECCCCCHHHHHHc
No 104
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=26.96 E-value=2e+02 Score=26.90 Aligned_cols=62 Identities=10% Similarity=0.142 Sum_probs=43.0
Q ss_pred HHHh--CCCCCCCEEEEEcCCchhHHHHHHHHhhcCcEEEeccccCChHHHHHHHhhcCccEEEEeC
Q 008636 55 SLSS--FGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDH 119 (558)
Q Consensus 55 ~L~~--~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 119 (558)
.|.+ .++++|++|+|...-+.-.+++++|-...|+.++.++. +.+.+ .++++.+++.++...
T Consensus 176 al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~vi~~~ 239 (359)
T 1h2b_A 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKL-KLAERLGADHVVDAR 239 (359)
T ss_dssp HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHH-HHHHHTTCSEEEETT
T ss_pred HHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHH-HHHHHhCCCEEEecc
Confidence 4555 68999999999998667788888877544886655543 34443 345678888777543
No 105
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=26.87 E-value=1.9e+02 Score=26.94 Aligned_cols=60 Identities=10% Similarity=0.200 Sum_probs=35.2
Q ss_pred CCCCCCEEEEEcCCchh------HHHHHHHHh-hcCcEEEeccccC--------C----hHHHHHHHhhcCccEEEEeC
Q 008636 60 GINPGHVVSVIAPNIPA------MYELHFAVP-MSGAIFNTINTRL--------D----ARTISIILKHSESKLVFVDH 119 (558)
Q Consensus 60 Gv~~gd~V~i~~~~~~~------~~~~~lA~~-~~G~~~v~l~~~~--------~----~~~l~~~l~~~~~~~ii~~~ 119 (558)
-+++||+|+|++|.+.- .+-...+.+ ..|..++.-.... + +++|...+.+-.+++|+|..
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47899999999998842 222223333 3477766532211 1 23356666667777777754
No 106
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=26.14 E-value=43 Score=30.34 Aligned_cols=29 Identities=38% Similarity=0.513 Sum_probs=22.7
Q ss_pred ccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCC
Q 008636 38 TTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPN 73 (558)
Q Consensus 38 ~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~ 73 (558)
..+|-.+ |...|+++||++||.|.|++.=
T Consensus 20 ~~~T~~~-------L~~~L~~LGI~~Gd~llVHsSL 48 (286)
T 3sma_A 20 ELVTRDR-------LASDLAALGVRPGGVLLVHASL 48 (286)
T ss_dssp CEECHHH-------HHHHHHHHTCCTTCEEEEEECS
T ss_pred CCcCHHH-------HHHHHHHcCCCCCCEEEEEech
Confidence 4566554 5677899999999999999863
No 107
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=26.00 E-value=43 Score=30.21 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCCCCCEEEEEcCC
Q 008636 51 QLASSLSSFGINPGHVVSVIAPN 73 (558)
Q Consensus 51 ~la~~L~~~Gv~~gd~V~i~~~~ 73 (558)
.|...|+++||++||.|.|++.=
T Consensus 17 ~L~~~L~~LGI~~Gd~llVHsSl 39 (273)
T 2nyg_A 17 SITEDLKALGLKKGMTVLVHSSL 39 (273)
T ss_dssp HHHHHHHHHTCCTTCEEEEEECS
T ss_pred HHHHHHHHcCCCCCCEEEEEech
Confidence 46778999999999999999873
No 108
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=25.82 E-value=1.2e+02 Score=22.16 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=32.5
Q ss_pred CCChhhHHHHHhhcCC--------------CCceEEECCccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcC
Q 008636 13 PLTPLGFIERAATACD--------------DCPSIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAP 72 (558)
Q Consensus 13 ~~tl~~~l~~~a~~~p--------------~~~a~~~~~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~ 72 (558)
..|+.++++....++| ..+++...++.+.. ..-++.||.|+|+-|
T Consensus 36 ~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~---------------~~~L~dGDeV~i~pp 94 (98)
T 1vjk_A 36 GARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW---------------DEELKDGDVVGVFPP 94 (98)
T ss_dssp TCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT---------------TCBCCTTCEEEEESC
T ss_pred CCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC---------------CCCCCCCCEEEEECC
Confidence 4699999998887765 44556666666541 345889999999866
No 109
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=25.78 E-value=2e+02 Score=26.66 Aligned_cols=13 Identities=8% Similarity=-0.363 Sum_probs=5.8
Q ss_pred CCChhhHHHHHhh
Q 008636 13 PLTPLGFIERAAT 25 (558)
Q Consensus 13 ~~tl~~~l~~~a~ 25 (558)
+..+.+.+.+...
T Consensus 14 ~~~v~~a~~~~~~ 26 (384)
T 1eg5_A 14 DDRVLEEMIVFYR 26 (384)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 3344444444443
No 110
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=25.69 E-value=3.7e+02 Score=24.40 Aligned_cols=89 Identities=10% Similarity=0.027 Sum_probs=54.8
Q ss_pred CCceEEECC--ccccHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEcCCchhHHHHHHHHhhcCcEEEeccccCChHHHHH
Q 008636 29 DCPSIIYND--TTYTWSQTYRRCLQLASSLSSFGI-NPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISI 105 (558)
Q Consensus 29 ~~~a~~~~~--~~~Ty~~l~~~v~~la~~L~~~Gv-~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 105 (558)
.++.+-.+. .+-++++--. ..+...+.+.|. ++|+.|.. ...+=.-..+.++|.+.|..++.+-|...+..-..
T Consensus 26 ~~i~~K~E~~~ptGSfK~R~a--~~~i~~a~~~g~~~~~~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~ 102 (316)
T 1y7l_A 26 GNVVVKIEGRNPSYSVKCRIG--ANMVWQAEKDGTLTKGKEIVD-ATSGNTGIALAYVAAARGYKITLTMPETMSLERKR 102 (316)
T ss_dssp TCEEEEETTSSGGGBTHHHHH--HHHHHHHHHTTSSCTTCEEEE-SCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHH
T ss_pred CEEEEEeccCCCCCChHHHHH--HHHHHHHHHcCCCCCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 455665544 3444554332 223333445554 66665544 44566666777778889987776666555555666
Q ss_pred HHhhcCccEEEEeCc
Q 008636 106 ILKHSESKLVFVDHL 120 (558)
Q Consensus 106 ~l~~~~~~~ii~~~~ 120 (558)
.++..++++++++..
T Consensus 103 ~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 103 LLCGLGVNLVLTEGA 117 (316)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHcCCEEEEeCCC
Confidence 789999999998764
No 111
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=25.49 E-value=1.8e+02 Score=27.12 Aligned_cols=55 Identities=11% Similarity=0.124 Sum_probs=33.4
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHhhcCcEEEecccc-------CChHHHHHHHhhcCccEEEEe
Q 008636 61 INPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTR-------LDARTISIILKHSESKLVFVD 118 (558)
Q Consensus 61 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~ii~~ 118 (558)
+++||.|++..+.... ...++...|+.++.++.. .+.+.++..++..++++++..
T Consensus 106 ~~~gd~vl~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~ 167 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNM---FYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFC 167 (391)
T ss_dssp SCTTCEEEECSSCCHH---HHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEE
T ss_pred CCCCCeEEECCCCcHH---HHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEE
Confidence 3577877665554433 223445567766666543 566778777775667776553
No 112
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=25.45 E-value=1.1e+02 Score=21.00 Aligned_cols=47 Identities=19% Similarity=0.087 Sum_probs=32.0
Q ss_pred hHHHHHHHhcCCCcceeEEEeeeCCCCCceeEEEEEecCCCCCCCCCCCHHHHHHHHHhcCC
Q 008636 456 STEIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIP 517 (558)
Q Consensus 456 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~ 517 (558)
..++.+.|.++|+|.+|..+..+.. ..+.+.. .+.+++.+.+.+.+.
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~d-----~l~~v~~----------~d~~~l~~~~~~~l~ 61 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYGVYD-----IVVKVEA----------DSMDKLKDFVTNTIR 61 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSSSCS-----EEEEEEC----------SSHHHHHHHHHHTGG
T ss_pred HHHHHHHHhCCCCeEEEEEEeccCC-----EEEEEEE----------CCHHHHHHHHHHHhc
Confidence 3688999999999999988753322 4444443 466777777765544
No 113
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=24.73 E-value=1.9e+02 Score=26.51 Aligned_cols=76 Identities=17% Similarity=0.123 Sum_probs=49.0
Q ss_pred ccccHHHHHHHHHHH--H-HHHHhCCCCCCCEEEEEc-CCchhHHHHHHHHhhcCcEEEeccccCChHHHHHHHhhcCcc
Q 008636 38 TTYTWSQTYRRCLQL--A-SSLSSFGINPGHVVSVIA-PNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESK 113 (558)
Q Consensus 38 ~~~Ty~~l~~~v~~l--a-~~L~~~Gv~~gd~V~i~~-~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 113 (558)
..+++.+........ | ..|...++++|++|+|+. .-+.-.+++++|- ..|+.++.+. +.+. ..++++.+++
T Consensus 124 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~ 198 (321)
T 3tqh_A 124 EKLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAE 198 (321)
T ss_dssp TTSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCS
T ss_pred CCCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCC
Confidence 356777664432221 2 334557899999999996 5666777777775 4588766553 3444 5567778888
Q ss_pred EEEEe
Q 008636 114 LVFVD 118 (558)
Q Consensus 114 ~ii~~ 118 (558)
.++..
T Consensus 199 ~~i~~ 203 (321)
T 3tqh_A 199 QCINY 203 (321)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 76643
No 114
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=24.52 E-value=2.1e+02 Score=26.59 Aligned_cols=60 Identities=12% Similarity=0.139 Sum_probs=35.1
Q ss_pred CCCCCCEEEEEcCCchh------HHHHHHHHhh-cCcEEEeccccC--------C----hHHHHHHHhhcCccEEEEeC
Q 008636 60 GINPGHVVSVIAPNIPA------MYELHFAVPM-SGAIFNTINTRL--------D----ARTISIILKHSESKLVFVDH 119 (558)
Q Consensus 60 Gv~~gd~V~i~~~~~~~------~~~~~lA~~~-~G~~~v~l~~~~--------~----~~~l~~~l~~~~~~~ii~~~ 119 (558)
-+++||+|+|++|.+.- .+-...+.++ .|..++.-+... + +++|...+.+-.+++|+|..
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47899999999998752 2222233332 477666443211 1 23355666667777777754
No 115
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=24.52 E-value=3.8e+02 Score=24.16 Aligned_cols=63 Identities=13% Similarity=0.030 Sum_probs=40.9
Q ss_pred HHHhCCC-CCCCEEEEEcCCchhHHHHHHHHhhcCcEEEeccccCChHHHHHHHhhcCccEEEEeCc
Q 008636 55 SLSSFGI-NPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHL 120 (558)
Q Consensus 55 ~L~~~Gv-~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 120 (558)
.+.+.|. +++ | +....+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 57 ~a~~~g~~~~~--v-v~aSsGN~g~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 120 (303)
T 1o58_A 57 DAEKRGLLKNG--I-VEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGE 120 (303)
T ss_dssp HHHHTTCCTTC--E-EEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCC--E-EEECchHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 3444554 344 2 3444455566666777789987776666554455566789999999998764
No 116
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=24.48 E-value=2.4e+02 Score=21.53 Aligned_cols=43 Identities=16% Similarity=0.148 Sum_probs=30.5
Q ss_pred HHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCcEEEec
Q 008636 52 LASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTI 94 (558)
Q Consensus 52 la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l 94 (558)
.+.+|.+.|+.+...+.|...+..+.+.++==+++.|...+.+
T Consensus 46 ~~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl 88 (119)
T 1ofu_X 46 THEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVV 88 (119)
T ss_dssp CHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEE
Confidence 3567777888777777777777778888888888887644443
No 117
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=24.41 E-value=1.8e+02 Score=27.34 Aligned_cols=12 Identities=25% Similarity=0.188 Sum_probs=5.3
Q ss_pred CCCCCEEEEEcC
Q 008636 61 INPGHVVSVIAP 72 (558)
Q Consensus 61 v~~gd~V~i~~~ 72 (558)
+++||.|++..+
T Consensus 76 ~~~gd~Vl~~~~ 87 (393)
T 1mdo_A 76 IGEGDEVITPSM 87 (393)
T ss_dssp CCTTCEEEEESS
T ss_pred CCCCCEEEeCCC
Confidence 344554444433
No 118
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=24.32 E-value=4e+02 Score=24.29 Aligned_cols=71 Identities=8% Similarity=-0.064 Sum_probs=49.5
Q ss_pred HHHHHHHHHhCC-CCCCCEEEEEcCCchhHHHHHHHHhhc----C---cEEEeccccCCh------HHHHHHHhhcCccE
Q 008636 49 CLQLASSLSSFG-INPGHVVSVIAPNIPAMYELHFAVPMS----G---AIFNTINTRLDA------RTISIILKHSESKL 114 (558)
Q Consensus 49 v~~la~~L~~~G-v~~gd~V~i~~~~~~~~~~~~lA~~~~----G---~~~v~l~~~~~~------~~l~~~l~~~~~~~ 114 (558)
..++...+.+.+ +.++++|++...-+.|..+++..+... | ..++.++..... +....+.+..+..+
T Consensus 8 ~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~~s~~~~~~v~~~a~~lgi~~ 87 (317)
T 1wy5_A 8 IRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKEFAKERNMKI 87 (317)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCcccHHHHHHHHHHHHHcCCcE
Confidence 345566666543 578899999999999999888777754 3 556777776631 22556667777777
Q ss_pred EEEeC
Q 008636 115 VFVDH 119 (558)
Q Consensus 115 ii~~~ 119 (558)
.+.+-
T Consensus 88 ~v~~~ 92 (317)
T 1wy5_A 88 FVGKE 92 (317)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 76654
No 119
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=24.24 E-value=1.2e+02 Score=30.58 Aligned_cols=83 Identities=5% Similarity=-0.172 Sum_probs=61.0
Q ss_pred ccccHHHHHHHHHHHHHHHHh-----CCCCCCCEEEEEcCCchh-HHHHHHHHhhcCcEEEeccccCChHHHHHHHhhcC
Q 008636 38 TTYTWSQTYRRCLQLASSLSS-----FGINPGHVVSVIAPNIPA-MYELHFAVPMSGAIFNTINTRLDARTISIILKHSE 111 (558)
Q Consensus 38 ~~~Ty~~l~~~v~~la~~L~~-----~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~ 111 (558)
-.+|.+.+...+..++..+.. ..+...+++...++...+ .+..++..+..|+..+........+.+...+++.+
T Consensus 193 V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~ 272 (562)
T 3ite_A 193 VRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELG 272 (562)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTT
T ss_pred EEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcC
Confidence 358999998888887776652 356778888877776654 34446777888988887655444566788899999
Q ss_pred ccEEEEeCc
Q 008636 112 SKLVFVDHL 120 (558)
Q Consensus 112 ~~~ii~~~~ 120 (558)
+.++.....
T Consensus 273 ~t~~~~~P~ 281 (562)
T 3ite_A 273 VTHAGIVPS 281 (562)
T ss_dssp CCEEEECHH
T ss_pred CCEEEcCHH
Confidence 999987664
No 120
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=23.35 E-value=3e+02 Score=26.88 Aligned_cols=70 Identities=9% Similarity=-0.014 Sum_probs=50.5
Q ss_pred HHHHHHHhCC-CCCCCEEEEEcCCchhHHHHHHHHhh----cC--cEEEeccccCC-h------HHHHHHHhhcCccEEE
Q 008636 51 QLASSLSSFG-INPGHVVSVIAPNIPAMYELHFAVPM----SG--AIFNTINTRLD-A------RTISIILKHSESKLVF 116 (558)
Q Consensus 51 ~la~~L~~~G-v~~gd~V~i~~~~~~~~~~~~lA~~~----~G--~~~v~l~~~~~-~------~~l~~~l~~~~~~~ii 116 (558)
++...+.+.+ +.++++|+|...-+.|.++++..+.. .| ..++.++.... . +....+.+..+..+.+
T Consensus 4 kv~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v 83 (464)
T 3a2k_A 4 KVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCET 83 (464)
T ss_dssp HHHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEEE
Confidence 4555666655 57899999999999999988887776 33 66777887775 2 2356667778887777
Q ss_pred EeCc
Q 008636 117 VDHL 120 (558)
Q Consensus 117 ~~~~ 120 (558)
.+-+
T Consensus 84 ~~~~ 87 (464)
T 3a2k_A 84 AQID 87 (464)
T ss_dssp EECC
T ss_pred EEec
Confidence 6543
No 121
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=23.31 E-value=2e+02 Score=26.85 Aligned_cols=79 Identities=15% Similarity=0.131 Sum_probs=48.5
Q ss_pred ccccHHHHHHHHHH--H-HHHHHhCCCC-CCCEEEEEcCCchhHHHHHHHHhhcCcEEEeccccCChHHHHHHHhhcCcc
Q 008636 38 TTYTWSQTYRRCLQ--L-ASSLSSFGIN-PGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESK 113 (558)
Q Consensus 38 ~~~Ty~~l~~~v~~--l-a~~L~~~Gv~-~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 113 (558)
..+++.+....... . -..|.+.+++ +|++|+|+..-++-.+++++|-. .|+.++.+..+ .+.+....++.+++
T Consensus 151 ~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~Vi~~~~~--~~~~~~~~~~lGa~ 227 (357)
T 2cf5_A 151 EGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKA-MGHHVTVISSS--NKKREEALQDLGAD 227 (357)
T ss_dssp SSCCHHHHTGGGTHHHHHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESS--TTHHHHHHTTSCCS
T ss_pred CCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC--hHHHHHHHHHcCCc
Confidence 35677664322111 1 1335566888 99999999876677777777765 58866555443 34444444477887
Q ss_pred EEEEeC
Q 008636 114 LVFVDH 119 (558)
Q Consensus 114 ~ii~~~ 119 (558)
.++...
T Consensus 228 ~vi~~~ 233 (357)
T 2cf5_A 228 DYVIGS 233 (357)
T ss_dssp CEEETT
T ss_pred eeeccc
Confidence 766533
No 122
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A
Probab=22.65 E-value=5.2e+02 Score=24.96 Aligned_cols=98 Identities=7% Similarity=-0.080 Sum_probs=61.7
Q ss_pred CCceEEECC--c-cccHHHH--HHHHHHHHHHH-HhCCC-CCCC----------------EEEEEcCCchhHHHHHHHHh
Q 008636 29 DCPSIIYND--T-TYTWSQT--YRRCLQLASSL-SSFGI-NPGH----------------VVSVIAPNIPAMYELHFAVP 85 (558)
Q Consensus 29 ~~~a~~~~~--~-~~Ty~~l--~~~v~~la~~L-~~~Gv-~~gd----------------~V~i~~~~~~~~~~~~lA~~ 85 (558)
.++.+-.+. . +=||++- ...+.+++..+ ++.|+ ++|+ +..+....+=.-..+.++|.
T Consensus 101 ~~v~lK~E~~~p~tGSfK~Rga~~~i~~l~~~~a~~~G~l~~g~~~~~l~~~~~r~~~~~~~vv~aSsGNhg~avA~~aa 180 (442)
T 3ss7_X 101 GQLLLKKDSHLPISGSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSA 180 (442)
T ss_dssp SEEEEEEGGGCTTTSBTHHHHHHHHHHHHHHHHHHHTTSCCTTSCGGGGGSHHHHHHHHTSEEEEECSSHHHHHHHHHHH
T ss_pred CeEEEeecCCCCCCCCcHHHHHHHHHHHHhHHHHHHcCCCCCCcchhhhhhhhhhhhccCcEEEEECCCHHHHHHHHHHH
Confidence 456666553 2 4466553 33344444442 45664 5555 35556666667777778888
Q ss_pred hcCcEEEeccccCChHHHHHHHhhcCccEEEEeCcChHHHH
Q 008636 86 MSGAIFNTINTRLDARTISIILKHSESKLVFVDHLSSSLLL 126 (558)
Q Consensus 86 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 126 (558)
+.|..++.+=|...+..-...++..++++++++........
T Consensus 181 ~~G~~~~Ivmp~~~~~~k~~~~r~~GA~Vv~v~~~~~~a~~ 221 (442)
T 3ss7_X 181 RIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGVAVE 221 (442)
T ss_dssp HHTCEEEEEEETTSCHHHHHHHHHTTCEEEEESSCHHHHHH
T ss_pred HhCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 89987776666555555667789999999999876544433
No 123
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=22.64 E-value=2.8e+02 Score=26.03 Aligned_cols=69 Identities=20% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCcEEEecccc----CChHHHHHHHhhcCccEEEEeC
Q 008636 49 CLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTR----LDARTISIILKHSESKLVFVDH 119 (558)
Q Consensus 49 v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~ii~~~ 119 (558)
...+...++.. +++||.|++..+...... ..-++...|+.++.++.+ .+.+.++..++..++++++...
T Consensus 72 t~al~~~~~~l-~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 144 (416)
T 3isl_A 72 RAGIEAVLASV-IEPEDDVLIPIYGRFGYL-LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVH 144 (416)
T ss_dssp HHHHHHHHHHH-CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEES
T ss_pred HHHHHHHHHHh-cCCCCEEEEecCCcccHH-HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEc
No 124
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=22.50 E-value=3.9e+02 Score=24.32 Aligned_cols=58 Identities=7% Similarity=-0.014 Sum_probs=40.4
Q ss_pred CCEEEEEcCCchhHHHHHHHHhhcCcEEEeccccCChHHHHHHHhhcCccEEEEeCcCh
Q 008636 64 GHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHLSS 122 (558)
Q Consensus 64 gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~ 122 (558)
++.|.. ...+=.-..+.++|.+.|..++.+-|...+......++..++++++++....
T Consensus 54 ~~~vv~-~ssGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~~~ 111 (318)
T 2rkb_A 54 CRHLVC-SSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVWD 111 (318)
T ss_dssp CCEEEE-CCCSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCSSHH
T ss_pred CCEEEE-ECCchHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHhcCCEEEEECCCHH
Confidence 344443 4446666667778889998777766655555667778999999999876443
No 125
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=22.09 E-value=2.7e+02 Score=26.00 Aligned_cols=54 Identities=13% Similarity=0.288 Sum_probs=32.1
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHhhcCcEEEecccc-----CChHHHHHHHhhcCccEEEE
Q 008636 60 GINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTR-----LDARTISIILKHSESKLVFV 117 (558)
Q Consensus 60 Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~~~~ii~ 117 (558)
++++||.|.+..+...... .++...|+.++.++.+ .+.+.++..++. ++++++.
T Consensus 76 ~~~~g~~Vi~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~ 134 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSWSTTY---YPLQQYGLRVKFVDIDINTLNIDIESLKEAVTD-STKAILT 134 (390)
T ss_dssp SCCTTCEEEEESSSCHHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEE
T ss_pred CCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEecCccccCcCHHHHHHHhCc-CCeEEEE
Confidence 5778888877666544433 3444567766655443 245667766654 5566665
No 126
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=21.79 E-value=3.3e+02 Score=24.98 Aligned_cols=54 Identities=9% Similarity=0.085 Sum_probs=27.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHhhcCcEEEecc--cc----CChHHHHHHHhh----cCccEEEEe
Q 008636 62 NPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTIN--TR----LDARTISIILKH----SESKLVFVD 118 (558)
Q Consensus 62 ~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~--~~----~~~~~l~~~l~~----~~~~~ii~~ 118 (558)
++||.|++..+........ +...|+.++.++ .+ .+.+.++..++. -+++++++.
T Consensus 91 ~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~ 154 (371)
T 2e7j_A 91 KKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALIT 154 (371)
T ss_dssp CTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEE
T ss_pred CCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEE
Confidence 4677666665544333322 445566555554 22 245566666653 245555543
No 127
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=21.71 E-value=3.2e+02 Score=25.36 Aligned_cols=78 Identities=18% Similarity=0.071 Sum_probs=49.1
Q ss_pred cccHHHHHHHH--HHHH-HHHHh-CCCCCCCEEEEEcC-CchhHHHHHHHHhhcCcEEE-eccccCChHHHHHHHhhcCc
Q 008636 39 TYTWSQTYRRC--LQLA-SSLSS-FGINPGHVVSVIAP-NIPAMYELHFAVPMSGAIFN-TINTRLDARTISIILKHSES 112 (558)
Q Consensus 39 ~~Ty~~l~~~v--~~la-~~L~~-~Gv~~gd~V~i~~~-~~~~~~~~~lA~~~~G~~~v-~l~~~~~~~~l~~~l~~~~~ 112 (558)
.+++.+..... -..| ..|.+ .++++|++|+|+.. -+.-.+++++|-. .|+..+ ..+.....++....++..++
T Consensus 139 ~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~-~Ga~vi~~~~~~~~~~~~~~~~~~lGa 217 (357)
T 1zsy_A 139 DIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAA-LGLRTINVVRDRPDIQKLSDRLKSLGA 217 (357)
T ss_dssp SSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHH-HTCEEEEEECCCSCHHHHHHHHHHTTC
T ss_pred CCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHH-cCCEEEEEecCccchHHHHHHHHhcCC
Confidence 57777654321 1122 23434 48999999999997 5667777777764 587544 44444344445566778888
Q ss_pred cEEEE
Q 008636 113 KLVFV 117 (558)
Q Consensus 113 ~~ii~ 117 (558)
+.++.
T Consensus 218 ~~vi~ 222 (357)
T 1zsy_A 218 EHVIT 222 (357)
T ss_dssp SEEEE
T ss_pred cEEEe
Confidence 88775
No 128
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=21.54 E-value=2.7e+02 Score=25.97 Aligned_cols=60 Identities=22% Similarity=0.329 Sum_probs=41.1
Q ss_pred HHHhCCCC-CCCEEEEEcCCchhHHHHHHHHhhcCcEEEeccccCChHHHHHHHhhcCccEEEE
Q 008636 55 SLSSFGIN-PGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFV 117 (558)
Q Consensus 55 ~L~~~Gv~-~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~ 117 (558)
.|.+.+++ +|++|+|...-++-..++++|- ..|+.++.+.. +.+.+....+..+++.++.
T Consensus 178 al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~-~~Ga~Vi~~~~--~~~~~~~~~~~lGa~~v~~ 238 (366)
T 1yqd_A 178 PLKYFGLDEPGKHIGIVGLGGLGHVAVKFAK-AFGSKVTVIST--SPSKKEEALKNFGADSFLV 238 (366)
T ss_dssp HHHHTTCCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEES--CGGGHHHHHHTSCCSEEEE
T ss_pred HHHhcCcCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeC--CHHHHHHHHHhcCCceEEe
Confidence 35566888 9999999987667777777765 46876555543 3455555555778877664
No 129
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=21.46 E-value=2.3e+02 Score=25.79 Aligned_cols=74 Identities=4% Similarity=0.070 Sum_probs=48.5
Q ss_pred ccccHHHHHHHHHHHH---HHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCcEEEeccccCChHHHHHHHhhcCccE
Q 008636 38 TTYTWSQTYRRCLQLA---SSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKL 114 (558)
Q Consensus 38 ~~~Ty~~l~~~v~~la---~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 114 (558)
..+++.+.......++ ..|...++++|++|+|+..-+.-.+++++|- ..|+.++.+. + .+.+ .++++.+++.
T Consensus 114 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qlak-~~Ga~Vi~~~-~--~~~~-~~~~~lGa~~ 188 (315)
T 3goh_A 114 DNLSFERAAALPCPLLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQMLN-NAGYVVDLVS-A--SLSQ-ALAAKRGVRH 188 (315)
T ss_dssp TTSCHHHHHTSHHHHHHHHHHHTTSCCCSCCEEEEECCSHHHHHHHHHHH-HHTCEEEEEC-S--SCCH-HHHHHHTEEE
T ss_pred CCCCHHHHhhCccHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEE-C--hhhH-HHHHHcCCCE
Confidence 4678887653333333 3334468999999999999556777777765 4588777665 2 3333 3346678887
Q ss_pred EE
Q 008636 115 VF 116 (558)
Q Consensus 115 ii 116 (558)
++
T Consensus 189 v~ 190 (315)
T 3goh_A 189 LY 190 (315)
T ss_dssp EE
T ss_pred EE
Confidence 77
No 130
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=21.27 E-value=2.8e+02 Score=25.60 Aligned_cols=77 Identities=10% Similarity=0.014 Sum_probs=49.8
Q ss_pred ccHHHHHHHHHHH---HHHHHhC--CCCCCCEEEEEcCCchhHHHHHHHHhhcCcEEEeccccCChHHHHHHHhhcCccE
Q 008636 40 YTWSQTYRRCLQL---ASSLSSF--GINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKL 114 (558)
Q Consensus 40 ~Ty~~l~~~v~~l---a~~L~~~--Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 114 (558)
+++.+........ -..|.+. ++++|++|+|...-+.-.+++++|-..-|+.++.++. +.+. ..++++.+++.
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~--~~~~-~~~~~~lGa~~ 219 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL--DDDR-LALAREVGADA 219 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--CHHH-HHHHHHTTCSE
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CHHH-HHHHHHcCCCE
Confidence 7776654333221 1344443 7899999999988667788888887664666665543 3344 34567788888
Q ss_pred EEEeC
Q 008636 115 VFVDH 119 (558)
Q Consensus 115 ii~~~ 119 (558)
++...
T Consensus 220 ~i~~~ 224 (345)
T 3jv7_A 220 AVKSG 224 (345)
T ss_dssp EEECS
T ss_pred EEcCC
Confidence 77644
No 131
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=21.18 E-value=4.3e+02 Score=24.60 Aligned_cols=53 Identities=9% Similarity=0.046 Sum_probs=27.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHhhcCcEEEeccccCChHHHHHHHhhc---CccEEEEe
Q 008636 62 NPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHS---ESKLVFVD 118 (558)
Q Consensus 62 ~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~---~~~~ii~~ 118 (558)
++||.|++..+...... -++...|+.++.++. .+.+.++..++.. +++++++.
T Consensus 125 ~~gd~V~~~~p~~~~~~---~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~ 180 (398)
T 3a2b_A 125 GRNDYILLDERDHASII---DGSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTD 180 (398)
T ss_dssp CTTCEEEEETTCCHHHH---HHHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEE
T ss_pred CCCCEEEECCccCHHHH---HHHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEe
Confidence 56666655555433322 233445666555543 3455566666554 45555543
No 132
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=21.10 E-value=1.9e+02 Score=27.13 Aligned_cols=57 Identities=14% Similarity=0.013 Sum_probs=41.7
Q ss_pred EEEEcCCchhHHHHHHHHhhcCcEEEeccccCChHHHHHHHhhcCccEEEEeCcChH
Q 008636 67 VSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHLSSS 123 (558)
Q Consensus 67 V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~ 123 (558)
..|....+=.-..+.++|.+.|..++.+-|...+......++..++++++++.....
T Consensus 95 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~~ 151 (364)
T 4h27_A 95 HFVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGELLDE 151 (364)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECSSTTH
T ss_pred EEEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECCCHHH
Confidence 344444466667777888899988777767666666777889999999999865443
No 133
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=20.99 E-value=2.7e+02 Score=25.88 Aligned_cols=55 Identities=20% Similarity=0.240 Sum_probs=23.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHhhcCcEEEecccc----CChHHHHHHHhh-cCccEEEE
Q 008636 62 NPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTR----LDARTISIILKH-SESKLVFV 117 (558)
Q Consensus 62 ~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~-~~~~~ii~ 117 (558)
++||.|++..+..+... +.-.+...|+.++.++.+ .+.+.++..++. -++++++.
T Consensus 81 ~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~ 140 (392)
T 2z9v_A 81 SPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSV 140 (392)
T ss_dssp CTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred CCCCEEEEecCCcccHH-HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEE
Confidence 45666655554333221 111112234444333322 345556666643 24555554
No 134
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=20.93 E-value=3.7e+02 Score=25.58 Aligned_cols=60 Identities=18% Similarity=-0.032 Sum_probs=29.9
Q ss_pred EEcCCchhHHH-HHHHHhhcCcEEEeccccCChHH--HHHHHhhcCccEEEEeCcChHHHHHH
Q 008636 69 VIAPNIPAMYE-LHFAVPMSGAIFNTINTRLDART--ISIILKHSESKLVFVDHLSSSLLLEV 128 (558)
Q Consensus 69 i~~~~~~~~~~-~~lA~~~~G~~~v~l~~~~~~~~--l~~~l~~~~~~~ii~~~~~~~~~~~~ 128 (558)
++..++.+.+. ++.++.+-|-.++..++.+.... +...+...+.+++.++......+.+.
T Consensus 100 ~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~a 162 (414)
T 3ndn_A 100 FATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERA 162 (414)
T ss_dssp EEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCCCHHHHHHh
Confidence 44445544433 33444555655555555554321 33344556777777665444444433
No 135
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=20.82 E-value=2.1e+02 Score=26.57 Aligned_cols=76 Identities=12% Similarity=-0.006 Sum_probs=47.6
Q ss_pred ccccHHHHHHHHHHH--H-HHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCc-EEEeccccCChHHHHHHHhhcCcc
Q 008636 38 TTYTWSQTYRRCLQL--A-SSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGA-IFNTINTRLDARTISIILKHSESK 113 (558)
Q Consensus 38 ~~~Ty~~l~~~v~~l--a-~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~ 113 (558)
..+++.+.......+ | +.|...++++|++|+|+..-++-.+++++|- ..|+ .++.++. +.+. ..++++.+++
T Consensus 138 ~~~~~~~aa~~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~~Vi~~~~--~~~~-~~~~~~lGa~ 213 (352)
T 3fpc_A 138 KEIPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGAN-HLGAGRIFAVGS--RKHC-CDIALEYGAT 213 (352)
T ss_dssp TTSCHHHHTTTTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHHH-TTTCSSEEEECC--CHHH-HHHHHHHTCC
T ss_pred CCCCHHHHhhccchhHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCcEEEEECC--CHHH-HHHHHHhCCc
Confidence 356666654321111 1 3355678999999999987666777777765 4687 4555543 2333 3466778888
Q ss_pred EEEE
Q 008636 114 LVFV 117 (558)
Q Consensus 114 ~ii~ 117 (558)
.++.
T Consensus 214 ~vi~ 217 (352)
T 3fpc_A 214 DIIN 217 (352)
T ss_dssp EEEC
T ss_pred eEEc
Confidence 7764
No 136
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=20.46 E-value=4e+02 Score=24.49 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=28.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHhhcCcEEEeccc-c----CChHHHHHHHhhcCccEEEEe
Q 008636 62 NPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINT-R----LDARTISIILKHSESKLVFVD 118 (558)
Q Consensus 62 ~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~-~----~~~~~l~~~l~~~~~~~ii~~ 118 (558)
++||.|++..+......+ .-++...|+.++.++. + .+.+.++..++..++++++..
T Consensus 84 ~~gd~vlv~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 144 (385)
T 2bkw_A 84 APNKNVLVVSTGTFSDRF-ADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVT 144 (385)
T ss_dssp CSCCEEEEECSSHHHHHH-HHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEE
T ss_pred CCCCeEEEEcCCcchHHH-HHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEE
Confidence 567777665443332221 1233445666555543 2 345667766665455666553
No 137
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=20.38 E-value=2.4e+02 Score=26.43 Aligned_cols=59 Identities=14% Similarity=0.232 Sum_probs=39.9
Q ss_pred HHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCc-EEEeccccCChHHHHHHHhhcCccEEEE
Q 008636 55 SLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGA-IFNTINTRLDARTISIILKHSESKLVFV 117 (558)
Q Consensus 55 ~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~ii~ 117 (558)
.|...++++|++|+|...-+.-.+++++|- ..|+ .++.++. +.+. ..+++..+++.++.
T Consensus 174 ~l~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~--~~~~-~~~a~~lGa~~vi~ 233 (370)
T 4ej6_A 174 GVDLSGIKAGSTVAILGGGVIGLLTVQLAR-LAGATTVILSTR--QATK-RRLAEEVGATATVD 233 (370)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECS--CHHH-HHHHHHHTCSEEEC
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECC--CHHH-HHHHHHcCCCEEEC
Confidence 345568999999999988556677777766 4687 5555543 2333 34566778877664
No 138
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=20.25 E-value=3.1e+02 Score=25.25 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=26.1
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHhhcCcEEEecccc----CChHHHHHHHhhcCccEEEEe
Q 008636 61 INPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTR----LDARTISIILKHSESKLVFVD 118 (558)
Q Consensus 61 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~ii~~ 118 (558)
+++||.|++..+...- ....-.+...|+.++.++.+ .+.+.++..++..++++++..
T Consensus 74 ~~~gd~vi~~~~~~~~-~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~ 134 (384)
T 3zrp_A 74 LKPNDKILVVSNGVFG-DRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALT 134 (384)
T ss_dssp CCTTCEEEEECSSHHH-HHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEE
T ss_pred cCCCCEEEEecCCcch-HHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEe
Confidence 3556666555443221 11112223445554444332 245566666665455555543
No 139
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=20.05 E-value=3.4e+02 Score=21.78 Aligned_cols=69 Identities=10% Similarity=0.113 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCcEEEeccccCChHHHHHH---HhhcCccEEEEeC
Q 008636 48 RCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISII---LKHSESKLVFVDH 119 (558)
Q Consensus 48 ~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~---l~~~~~~~ii~~~ 119 (558)
+...+...|... ++..++|+++.....-.+.-.+...|..+..++.+.+..+-..+ ++....+++|+++
T Consensus 21 K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~ 92 (175)
T 2rb4_A 21 KYQALCNIYGSI---TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN 92 (175)
T ss_dssp HHHHHHHHHTTS---CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC
T ss_pred HHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 445555555543 45688888887665554444555668888888888887665444 4455667777764
Done!