BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008637
         (558 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana
           GN=At1g04910 PE=1 SV=1
          Length = 519

 Score =  261 bits (666), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 160/435 (36%), Positives = 243/435 (55%), Gaps = 23/435 (5%)

Query: 126 ISTIWKASHKGVEWKPCVKRSSGELP---ESNGYISVEANGGLNQQRISICNAVAVAGYL 182
           +  +W+++  G  W+P     S   P   E+NGY+ V  NGGLNQQR +ICNAV  A  +
Sbjct: 59  VEELWESAKSG-GWRPSSAPRSDWPPPTKETNGYLRVRCNGGLNQQRSAICNAVLAARIM 117

Query: 183 NATLVIPNFHYHSIWRDPSKFRDIYDEDYFTSVLQNDVRVVNKIPEYIMERFDHNMSNVY 242
           NATLV+P    +S W D S F+ IYD ++F   L+ DV++V KIP+ + +         +
Sbjct: 118 NATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPD-VHKNGKTKKIKAF 176

Query: 243 NFRVKAWSPIQFYKDEVLPKLLEERLIRISPFANRLSFDAP-PAVQRLRCLANYEALRFS 301
             R    +PI++Y    L  + E   I ++PF++RL+ +   P  QRLRC  NY ALRF 
Sbjct: 177 QIRPPRDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFK 236

Query: 302 SPILTMGETLVARMKERSVNHGGKYISVHLRFEEDMVAFSCCVFDGGEREKEDMKEARER 361
             I+ + E++V +++ +     G ++S+HLRFE DM+AF+ C       E++ +++ R+ 
Sbjct: 237 PHIMKLSESIVDKLRSQ-----GHFMSIHLRFEMDMLAFAGCFDIFNPEEQKILRKYRKE 291

Query: 362 GWKGKFTKPGRVIRPGAIRINGKCPLTPLEVGLMLRGMGFDKNTYIFLASGKIYNAEKTM 421
            +  K     R+I     R  GKCPLTP EVGL+LR M FD +T I+LA+G+++  E+ M
Sbjct: 292 NFADK-----RLIY-NERRAIGKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQFM 345

Query: 422 APLIEMFPNLQTKEMLASEEELAPFKNFSSRMAAVDYTVCLHSEVFVTTQGG--NFPHFL 479
            P   +FP L     +   EEL+         +AVDY VCL S++F+ T  G  NF + L
Sbjct: 346 KPFRTLFPRLDNHSSVDPSEELSATSQ-GLIGSAVDYMVCLLSDIFMPTYDGPSNFANNL 404

Query: 480 MGHRRYLYGGHSKTIRPDKRKLALLFDNPNIGWRS-FKRQMLSMRSHSDSKGYELKRPSD 538
           +GHR  LY G   TIRPD++ LA +F     G R+ F+  +  +   ++  G   +   +
Sbjct: 405 LGHR--LYYGFRTTIRPDRKALAPIFIAREKGKRAGFEEAVRRVMLKTNFGGPHKRVSPE 462

Query: 539 SPYTFPCPDCMCRAN 553
           S YT   P+C C+ N
Sbjct: 463 SFYTNSWPECFCQMN 477


>sp|A3MX72|SYW_PYRCJ Tryptophan--tRNA ligase OS=Pyrobaculum calidifontis (strain JCM
           11548 / VA1) GN=trpS PE=3 SV=1
          Length = 374

 Score = 35.0 bits (79), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 28  HGRGKPGGRFTPVGPPGRANLAHRLAWLFLSVLLRRQGIFLF 69
           HG GKP   +T  GP G  ++ H + W+ L  L  + G+ ++
Sbjct: 67  HGEGKPWALYTGRGPSGPVHIGHMVPWILLKWLSDKFGVEVY 108


>sp|Q673L6|TERT_RAT Telomerase reverse transcriptase OS=Rattus norvegicus GN=Tert PE=2
           SV=1
          Length = 1125

 Score = 32.3 bits (72), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 10/84 (11%)

Query: 380 RINGKCPLTPLEVGLMLRGMGFDKNTYIFLASGK----IYNAEKTMAPLIEMFPNLQTKE 435
           ++NG  P+  +  G+  R  G  K T  F  S K    + N E+T        PNL    
Sbjct: 616 KLNGLRPIVNMSYGMDTRAFGKKKQTQCFTQSLKTLFSVLNYERTK------HPNLMGAS 669

Query: 436 MLASEEELAPFKNFSSRMAAVDYT 459
           +L + +    ++ F  R+ A+D T
Sbjct: 670 VLGTSDSYRIWRTFVLRVRALDQT 693


>sp|A4WL99|SYW_PYRAR Tryptophan--tRNA ligase OS=Pyrobaculum arsenaticum (strain DSM
           13514 / JCM 11321) GN=trpS PE=3 SV=1
          Length = 374

 Score = 32.3 bits (72), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 28  HGRGKPGGRFTPVGPPGRANLAHRLAWLFLSVLLRRQGIFLF 69
           HG G+P   +T  GP G  ++ H + W+ L     + G+ ++
Sbjct: 67  HGEGRPWALYTGRGPSGPVHIGHMVPWILLKWFSDKFGVEVY 108


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.137    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 224,256,516
Number of Sequences: 539616
Number of extensions: 10059642
Number of successful extensions: 23882
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 23865
Number of HSP's gapped (non-prelim): 19
length of query: 558
length of database: 191,569,459
effective HSP length: 123
effective length of query: 435
effective length of database: 125,196,691
effective search space: 54460560585
effective search space used: 54460560585
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)