Query 008637
Match_columns 558
No_of_seqs 221 out of 407
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 08:12:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008637.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008637hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.5 3.5E-14 1.2E-18 148.2 11.4 296 151-492 19-383 (408)
2 3zy2_A Putative GDP-fucose pro 99.1 6.5E-10 2.2E-14 115.4 13.7 268 152-486 6-347 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 97.4 0.005 1.7E-07 67.2 17.9 250 154-484 145-418 (526)
4 2hhc_A NODZ, nodulation fucosy 97.2 0.0016 5.6E-08 65.5 11.4 40 153-192 3-42 (330)
5 1l2m_A REP protein; A+B fold, 20.0 99 0.0034 27.5 4.2 29 384-413 17-45 (118)
6 1p3q_Q VPS9P, vacuolar protein 16.8 34 0.0012 26.7 0.4 38 419-461 14-51 (54)
7 3l32_A Phosphoprotein; antipar 16.5 56 0.0019 24.7 1.5 21 297-317 2-22 (45)
8 3mpy_A Ethanolamine utilizatio 14.9 2.4E+02 0.0081 24.5 5.3 50 154-203 38-97 (103)
9 2eqr_A N-COR1, N-COR, nuclear 14.8 89 0.0031 24.0 2.4 20 381-400 9-28 (61)
10 2g7j_A Putative cytoplasmic pr 13.7 68 0.0023 28.6 1.5 19 387-405 3-21 (124)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.51 E-value=3.5e-14 Score=148.25 Aligned_cols=296 Identities=17% Similarity=0.238 Sum_probs=163.0
Q ss_pred CCCCceEEEEec-C-chhHHHHHHHHHHHHHHHhcce----EEecccCCCccccCC------CCCCcccChHHHHHhccc
Q 008637 151 PESNGYISVEAN-G-GLNQQRISICNAVAVAGYLNAT----LVIPNFHYHSIWRDP------SKFRDIYDEDYFTSVLQN 218 (558)
Q Consensus 151 ~~snGYl~V~~n-G-GLNQqR~~IcDaVavArlLNAT----LVlP~l~~~s~W~D~------S~F~dIFD~dhFI~sL~~ 218 (558)
...++||+-..| | |.|.||...-.|.+.|+.||.| ||||-...---|+-. -.|++.||++++ +.
T Consensus 19 ~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~~ 94 (408)
T 4ap5_A 19 ASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----NK 94 (408)
T ss_dssp -CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----HT
T ss_pred ccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----Hh
Confidence 456899998864 5 8999999999999999999999 999966432335533 249999999865 55
Q ss_pred cccccccCchhHHHhhcccCCccccc-ccc----c-----C-----------------------CChhhHHhhcchhhhc
Q 008637 219 DVRVVNKIPEYIMERFDHNMSNVYNF-RVK----A-----W-----------------------SPIQFYKDEVLPKLLE 265 (558)
Q Consensus 219 dVrIVk~LP~~l~~~~~~~~~~~~~~-~~~----~-----~-----------------------s~~~yY~~~VlP~l~k 265 (558)
.|+||.- +++++..+... +..+ ..+ . | .++.|=...|. ...
T Consensus 95 ~vpVI~m--eeFl~~~~~~~--~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~--~~~ 168 (408)
T 4ap5_A 95 NIPVIEY--EQFIAESGGPF--IDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETR--GLN 168 (408)
T ss_dssp TSCEEEH--HHHHHHSSSSE--EEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCE--EEE
T ss_pred hCCeeEH--HHHHHHhCCCC--CcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccc--cCC
Confidence 6677654 44443221100 0000 000 0 0 01111000000 011
Q ss_pred cceEEEcCCCccccC-----------------CCC------chhhhhhccccccccccchhHHHHHHHHHHHHHhccccC
Q 008637 266 ERLIRISPFANRLSF-----------------DAP------PAVQRLRCLANYEALRFSSPILTMGETLVARMKERSVNH 322 (558)
Q Consensus 266 ~~vi~l~~f~~rLa~-----------------~lP------~~iQrLRCrvnf~ALrF~~~I~~lg~~LV~Rmr~~s~~~ 322 (558)
..-+.+.+..+.+.. .+| .+...+ -..|+|.+.|.+.|++.++..-.
T Consensus 169 ~~c~~~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~-----~r~l~~s~~l~~~a~~fi~~~L~----- 238 (408)
T 4ap5_A 169 VSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDT-----RRSMVFARHLREVGDEFRSRHLN----- 238 (408)
T ss_dssp EEEEEECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHH-----HHTCCBCHHHHHHHHHHHHHHHC-----
T ss_pred ceeEEEeecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhH-----HHHhhhhHHHHHHHHHHHHHHhC-----
Confidence 111122221111110 000 111111 13699999999999998886642
Q ss_pred CCceEEEeeccchhhhhhcccccCCChhHHHHHHHHHHhccccccCCCCcccCchhhhcCC-CCCCCHHHHHHHHhhcCC
Q 008637 323 GGKYISVHLRFEEDMVAFSCCVFDGGEREKEDMKEARERGWKGKFTKPGRVIRPGAIRING-KCPLTPLEVGLMLRGMGF 401 (558)
Q Consensus 323 ~g~yiAlHLRfE~DMlAfsgC~~~~~~~E~~eL~~~R~~~w~~k~~~~~~~i~~~~~R~~G-~CPLTPeEvgl~LralGf 401 (558)
++|+++|+|.+.|+... |....... ...+..-+.+.+ +-..... .+|-.++-+..+.+.|-=
T Consensus 239 -~~~~~~h~r~~~dw~~~--~~~~~~~~---------~~~y~~~H~Rr~-----d~~~~~~~~~ps~~~~~~~i~~~~~~ 301 (408)
T 4ap5_A 239 -STDDADRIPFQEDWMKM--KVKLGSAL---------GGPYLGVHLRRK-----DFIWGHRQDVPSLEGAVRKIRSLMKT 301 (408)
T ss_dssp -CCTTTTTCCCCSSGGGC--CCCTTCBC---------CEEEEEEEECCT-----TTTTTTCSSSCCHHHHHHHHHHHHHH
T ss_pred -cccceeecccchhHhhh--hccccccc---------CCCccccccccc-----cchhhhhccCCCHHHHHHHHHHHHHh
Confidence 36666666666666543 32211100 000111110000 0000111 223332222323322222
Q ss_pred CCCcEEEEeeccccCccccchhHHHhCCcccccccCCChhhhccccccccccccceeeeeecCcceeecCCCChhhhhhh
Q 008637 402 DKNTYIFLASGKIYNAEKTMAPLIEMFPNLQTKEMLASEEELAPFKNFSSRMAAVDYTVCLHSEVFVTTQGGNFPHFLMG 481 (558)
Q Consensus 402 ~~~T~IYlAsGeiyGg~~~m~pL~~~FPnl~tKe~L~s~eEL~pf~~~ss~~AALDYiVcl~SDVFv~t~~GNfa~~V~G 481 (558)
.+-+.||||+-+ .+..+..|++.+|.++.-.. ..+++..+ .....|.||-+||.+||+||+|..++|+..|.=
T Consensus 302 ~~~~~VyiATD~---~~~~~~~l~~~~~~~~~~~~--~~~~~~~~--~d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~ 374 (408)
T 4ap5_A 302 HRLDKVFVATDA---VRKEYEELKKLLPEMVRFEP--TWEELELY--KDGGVAIIDQWICAHARFFIGTSVSTFSFRIHE 374 (408)
T ss_dssp HTCSCEEEEECC---CHHHHHHHHHHCTTEECCCC--CHHHHHHH--HHHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHH
T ss_pred cCCCEEEEeCCC---chhHHHHHHHhCCCcEEecC--cchhhhcc--CcchhhHHHHHHHHhCCeeEeCCcCchhHHHHH
Confidence 244569999875 34457889999987764322 23445444 234679999999999999999999999999999
Q ss_pred hcccccCCccc
Q 008637 482 HRRYLYGGHSK 492 (558)
Q Consensus 482 hR~y~~~G~~k 492 (558)
.|-++ |+.+
T Consensus 375 eR~~~--G~~~ 383 (408)
T 4ap5_A 375 EREIL--GLDP 383 (408)
T ss_dssp HHHHH--TBCG
T ss_pred HHHhc--CCCC
Confidence 99987 8753
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=99.09 E-value=6.5e-10 Score=115.42 Aligned_cols=268 Identities=19% Similarity=0.286 Sum_probs=157.8
Q ss_pred CCCceEEEE-ecCchhHHHHHHHHHHHHHHHhcceEEecccCCCccccCCCC---CCcccChHHHHHhccccccccccCc
Q 008637 152 ESNGYISVE-ANGGLNQQRISICNAVAVAGYLNATLVIPNFHYHSIWRDPSK---FRDIYDEDYFTSVLQNDVRVVNKIP 227 (558)
Q Consensus 152 ~snGYl~V~-~nGGLNQqR~~IcDaVavArlLNATLVlP~l~~~s~W~D~S~---F~dIFD~dhFI~sL~~dVrIVk~LP 227 (558)
.+||||+-= |-|-+.+|--...-+.+.|+.||.|||||-+-. |-+-.+. |++.|+++. |+..-|||.-
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~--y~~~~~~~vpf~~yF~v~~----l~~yhrvi~m-- 77 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIE--FKHPETKMIPFEFLFQVGT----VAKYTRVVTM-- 77 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEE--CSSSSCEEECHHHHBCHHH----HTTTSCEECH--
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCcccc--ccCCcccccchhheeecch----hhhhceeeeH--
Confidence 369998875 999999999999999999999999999998753 2222233 888888765 4444455422
Q ss_pred hhHHHhh-------------c-------------ccCC----cc-------ccccc-cc--CCC----hhh--------H
Q 008637 228 EYIMERF-------------D-------------HNMS----NV-------YNFRV-KA--WSP----IQF--------Y 255 (558)
Q Consensus 228 ~~l~~~~-------------~-------------~~~~----~~-------~~~~~-~~--~s~----~~y--------Y 255 (558)
+++|+.. - ..+. |+ .++.. .+ +.+ ..| +
T Consensus 78 e~Fm~~lap~~WP~~~R~~~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~W 157 (362)
T 3zy2_A 78 QEFTKKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKKW 157 (362)
T ss_dssp HHHHHHTHHHHSCGGGCEEEESSCBC-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC-------CH
T ss_pred HHHHHHhccccCCcccceEeeccccccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccchhHHHHH
Confidence 2221100 0 0000 00 00000 00 111 111 1
Q ss_pred HhhcchhhhccceEEEcCCCccccCCCCc---hhhhhhccccccccccchhHHHHHHHHHHHHHhccccCCCceEEEeec
Q 008637 256 KDEVLPKLLEERLIRISPFANRLSFDAPP---AVQRLRCLANYEALRFSSPILTMGETLVARMKERSVNHGGKYISVHLR 332 (558)
Q Consensus 256 ~~~VlP~l~k~~vi~l~~f~~rLa~~lP~---~iQrLRCrvnf~ALrF~~~I~~lg~~LV~Rmr~~s~~~~g~yiAlHLR 332 (558)
.++.-| .+|-|+.|.+.-.. +.+.. .||| -|+++++|.+.|++.++.-- .++|||+|||
T Consensus 158 ~~~~p~--~~~pVlAf~gaPa~--FPv~~e~r~Lqk--------Ym~WS~~i~~~a~~fI~~~L------~rpyVgIHLR 219 (362)
T 3zy2_A 158 LEKFPS--EEYPVLAFSSAPAP--FPSKGKVWSIQK--------YLRWSSRITEQAKKFISANL------AKPFVAVHLR 219 (362)
T ss_dssp HHHSCT--TTCSEEEESSCSSC--SSCCGGGGGGGG--------GCCBCHHHHHHHHHHHHHHC------CSSEEEEEEC
T ss_pred HHhCCc--ccCceEeecCCCCC--CCcChhhHhHHH--------hccccHHHHHHHHHHHHHhc------CCCeEEEEEe
Confidence 111111 34566666532111 11111 2555 58999999999999888743 2499999999
Q ss_pred cchhhhhhcccccCCCh------hHHHHHHHHHHhccccccCCCCcccCchhhhcCC-----CCCCCHHH----HHHHHh
Q 008637 333 FEEDMVAFSCCVFDGGE------REKEDMKEARERGWKGKFTKPGRVIRPGAIRING-----KCPLTPLE----VGLMLR 397 (558)
Q Consensus 333 fE~DMlAfsgC~~~~~~------~E~~eL~~~R~~~w~~k~~~~~~~i~~~~~R~~G-----~CPLTPeE----vgl~Lr 397 (558)
--.|+.-. |.+.-.. +.-.-+ +| ....| .|==+-++ +..+++
T Consensus 220 ~G~DW~~a--C~hlk~~~~~~lfaSPQC~------Gy---------------~~~~~~lt~emClPSle~I~rqIk~~vk 276 (362)
T 3zy2_A 220 NDADWVRV--CEHIDTTTNRPLFASEQCL------GE---------------GHHLGTLTKEICSPSKQQILEQIVEKVG 276 (362)
T ss_dssp CCHHHHHH--HHTCCTTTCCCCTTTHHHH------CG---------------GGTTCCCCHHHHSCCHHHHHHHHHHHHH
T ss_pred cCCcHHHH--HhhhccccCcccccCCccc------CC---------------cccCcccchhccCCCHHHHHHHHHHHHH
Confidence 99899876 7752110 000011 01 01111 23112323 444555
Q ss_pred hcCCCCCcEEEEeeccccCccccchhHHHhCCcccccccCCChhhhccccccccccccceeeeeecCcceeecCCCChhh
Q 008637 398 GMGFDKNTYIFLASGKIYNAEKTMAPLIEMFPNLQTKEMLASEEELAPFKNFSSRMAAVDYTVCLHSEVFVTTQGGNFPH 477 (558)
Q Consensus 398 alGf~~~T~IYlAsGeiyGg~~~m~pL~~~FPnl~tKe~L~s~eEL~pf~~~ss~~AALDYiVcl~SDVFv~t~~GNfa~ 477 (558)
.++ -..||||+-. +..+.-|+++|+.... .+.+ ++| -.|+||.+||.+||+||+|..++|+.
T Consensus 277 ~~~---lksVFIATDa----~~~~~ELk~~L~~~~v--~vv~---~~p------e~a~ID~~I~~~A~~FIGN~~SSFSa 338 (362)
T 3zy2_A 277 SIG---AKSVFVASDK----DHMIDEINEALKPYEI--EAHR---QEP------DDMYTSLAIMGRADLFVGNCVSTFSH 338 (362)
T ss_dssp HHT---CSEEEEEESS----CCCHHHHHHHHGGGTC--CEEC---CSS------CCHHHHHHHHHHSSEEEECTTCHHHH
T ss_pred hcC---CcEEEEecCC----HHHHHHHHHHhhccCc--eEEE---eCC------chhHHHHHHHHhCCEeecCccccccH
Confidence 555 4569999965 4467888888874211 1111 111 17999999999999999999999999
Q ss_pred hhhhhcccc
Q 008637 478 FLMGHRRYL 486 (558)
Q Consensus 478 ~V~GhR~y~ 486 (558)
.|.=.|--+
T Consensus 339 ~I~rERdi~ 347 (362)
T 3zy2_A 339 IVKRERDHA 347 (362)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhc
Confidence 999888654
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=97.38 E-value=0.005 Score=67.20 Aligned_cols=250 Identities=14% Similarity=0.110 Sum_probs=138.6
Q ss_pred CceEEEEe--cCchhHHHHHHHHHHHHHHHhcceEEecccCCCccccC-CCCCCcccChHHHHHhccccccccccCchhH
Q 008637 154 NGYISVEA--NGGLNQQRISICNAVAVAGYLNATLVIPNFHYHSIWRD-PSKFRDIYDEDYFTSVLQNDVRVVNKIPEYI 230 (558)
Q Consensus 154 nGYl~V~~--nGGLNQqR~~IcDaVavArlLNATLVlP~l~~~s~W~D-~S~F~dIFD~dhFI~sL~~dVrIVk~LP~~l 230 (558)
..||+... -.|+.-+-..++-|..+|-.+|-|||+-.-. |.- ...|+++|+. +...+... |
T Consensus 145 aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~----w~Y~~g~w~~yF~P--~s~~C~~~-------~--- 208 (526)
T 2de0_X 145 AKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQN----WRYATGGWETVFRP--VSETCTDR-------S--- 208 (526)
T ss_dssp SCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTT----CSSCTTCGGGTBCC--SCSSCCCC-------C---
T ss_pred CCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCC----CCcCCCCHHHhhhC--cCccccCC-------C---
Confidence 57999886 4799999999999999999999999994422 442 2467777764 11111110 0
Q ss_pred HHhhcccCCcccccccccCCChhhHHhhcchhhhccceEEEcCCC--cc---cc-CCCCch----hhhhhc-------cc
Q 008637 231 MERFDHNMSNVYNFRVKAWSPIQFYKDEVLPKLLEERLIRISPFA--NR---LS-FDAPPA----VQRLRC-------LA 293 (558)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~s~~~yY~~~VlP~l~k~~vi~l~~f~--~r---La-~~lP~~----iQrLRC-------rv 293 (558)
......|..... -..+.||.+.-.+ ++ .. ..+|.+ ++++.- ..
T Consensus 209 ------------~~~~~~w~~~~~--------~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~~~q 268 (526)
T 2de0_X 209 ------------GISTGHWSGEVK--------DKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQ 268 (526)
T ss_dssp ------------CSCCCBCCCTTG--------GGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHHHHH
T ss_pred ------------ccccCCCCCccc--------CCCcceEEeeccccccccccccccccchhHHHHHHhccCCcHHHHHHH
Confidence 001122332210 0234444332221 11 11 134433 333320 01
Q ss_pred cc-cccccchhHHHHHHHHHHHHHhccccCCCceEEEeeccchhhhhhcccccCCChhHHHHHHHHHHhccccccCCCCc
Q 008637 294 NY-EALRFSSPILTMGETLVARMKERSVNHGGKYISVHLRFEEDMVAFSCCVFDGGEREKEDMKEARERGWKGKFTKPGR 372 (558)
Q Consensus 294 nf-~ALrF~~~I~~lg~~LV~Rmr~~s~~~~g~yiAlHLRfE~DMlAfsgC~~~~~~~E~~eL~~~R~~~w~~k~~~~~~ 372 (558)
.+ ..+|+.++|++.-+.+.+.+.- +++.|+||.|-- |-++. .....+.+ +-+..+
T Consensus 269 ~~~yl~rP~~~i~~~I~~~~~~l~~-----~~piVGVHIRrG-Dk~~~---E~~~~~~~-~Y~~~v-------------- 324 (526)
T 2de0_X 269 FVKYLIRPQPWLEKEIEEATKKLGF-----KHPVIGVHVRRT-DKVGT---EAAFHPIE-EYMVHV-------------- 324 (526)
T ss_dssp HHHHHTCBCHHHHHHHHHHHHHHTC-----CSSEEEEEECCC---------CCCSCSHH-HHHHHH--------------
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCC-----CCCEEEEEEeCC-CCCcc---ccccCCHH-HHHHHH--------------
Confidence 11 2478999999888888777642 579999999943 22221 00111111 111111
Q ss_pred ccCchhhhcCCCCCCCHHHHHHHHhhcCCCCCcEEEEeeccccCccccchhHHHhCCcc--cccccCCChhhh-cccccc
Q 008637 373 VIRPGAIRINGKCPLTPLEVGLMLRGMGFDKNTYIFLASGKIYNAEKTMAPLIEMFPNL--QTKEMLASEEEL-APFKNF 449 (558)
Q Consensus 373 ~i~~~~~R~~G~CPLTPeEvgl~LralGf~~~T~IYlAsGeiyGg~~~m~pL~~~FPnl--~tKe~L~s~eEL-~pf~~~ 449 (558)
++.-..|+.......+.||||+-+ ...++-+++.||+. ++-........+ ..+...
T Consensus 325 -----------------~~~~~~l~~~~~~~~~~ifLATDD----p~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~ 383 (526)
T 2de0_X 325 -----------------EEHFQLLARRMQVDKKRVYLATDD----PSLLKEAKTKYPNYEFISDNSISWSAGLHNRYTEN 383 (526)
T ss_dssp -----------------HHHHHHHHTTSCCSSCEEEEEESC----HHHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCCT
T ss_pred -----------------HHHHHHHHhhcCCCCCeEEEEcCC----HHHHHHHHHhCCCCEEecCcccccccCccccccHH
Confidence 111111333346788899999988 56677888889985 322211111111 111111
Q ss_pred ccccccceeeeeecCcceeecCCCChhhhhhhhcc
Q 008637 450 SSRMAAVDYTVCLHSEVFVTTQGGNFPHFLMGHRR 484 (558)
Q Consensus 450 ss~~AALDYiVcl~SDVFv~t~~GNfa~~V~GhR~ 484 (558)
+-..+.+|.++.+++|+||+|.++||++++...+-
T Consensus 384 ~l~~~l~DL~lLs~cd~~Vgt~sS~~srla~~l~~ 418 (526)
T 2de0_X 384 SLRGVILDIHFLSQADFLVCTFSSQVCRVAYEIMQ 418 (526)
T ss_dssp HHHHHHHHHHHHHHSSEEEECTTSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCeeecCCCCHHHHHHHHHhc
Confidence 11457899999999999999999999998877664
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=97.23 E-value=0.0016 Score=65.46 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=35.8
Q ss_pred CCceEEEEecCchhHHHHHHHHHHHHHHHhcceEEecccC
Q 008637 153 SNGYISVEANGGLNQQRISICNAVAVAGYLNATLVIPNFH 192 (558)
Q Consensus 153 snGYl~V~~nGGLNQqR~~IcDaVavArlLNATLVlP~l~ 192 (558)
+..||++...|||.+|=-+++.|.++|.+.|.+|+|--..
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~ 42 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG 42 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC
Confidence 4579999999999999999999999999999998886443
No 5
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=19.96 E-value=99 Score=27.54 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHhhcCCCCCcEEEEeecc
Q 008637 384 KCPLTPLEVGLMLRGMGFDKNTYIFLASGK 413 (558)
Q Consensus 384 ~CPLTPeEvgl~LralGf~~~T~IYlAsGe 413 (558)
.||||+||+...|+.|--+.+ ..|+...+
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~~-~~yi~i~r 45 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPTN-KLFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSC-EEEEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCcc-eeeeeehh
Confidence 799999999999999885543 55655544
No 6
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=16.76 E-value=34 Score=26.73 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=19.6
Q ss_pred ccchhHHHhCCcccccccCCChhhhccccccccccccceeeee
Q 008637 419 KTMAPLIEMFPNLQTKEMLASEEELAPFKNFSSRMAAVDYTVC 461 (558)
Q Consensus 419 ~~m~pL~~~FPnl~tKe~L~s~eEL~pf~~~ss~~AALDYiVc 461 (558)
..+..|++|||++ ++|-+-.- | ..|.+...+|||....
T Consensus 14 ~~~~~L~~MFP~l-D~evI~~V--l--~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 14 DTLNTLQNMFPDM-DPSLIEDV--C--IAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHSTTS-CHHHHHHH--H--HHSCC--CGGGC----
T ss_pred HHHHHHHHHcccC-CHHHHHHH--H--HHcCCCHHHHHHHHHh
Confidence 3578899999998 33333221 1 2244566788886543
No 7
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=16.46 E-value=56 Score=24.69 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=17.8
Q ss_pred ccccchhHHHHHHHHHHHHHh
Q 008637 297 ALRFSSPILTMGETLVARMKE 317 (558)
Q Consensus 297 ALrF~~~I~~lg~~LV~Rmr~ 317 (558)
++-|+.-+.++|.++|.||++
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKt 22 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRS 22 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHHHHc
Confidence 345777889999999999996
No 8
>3mpy_A Ethanolamine utilization protein EUTM; bacterial microcompartment, shell protein, ethanolamine AMMO lyase, carboxysome, membrane protein; 2.00A {Escherichia coli} PDB: 3mpw_G 3i6p_A
Probab=14.85 E-value=2.4e+02 Score=24.52 Aligned_cols=50 Identities=22% Similarity=0.224 Sum_probs=39.6
Q ss_pred CceEEEEecCchhHHHHHHHHHHHHHH---HhcceEEecccCC-------CccccCCCCC
Q 008637 154 NGYISVEANGGLNQQRISICNAVAVAG---YLNATLVIPNFHY-------HSIWRDPSKF 203 (558)
Q Consensus 154 nGYl~V~~nGGLNQqR~~IcDaVavAr---lLNATLVlP~l~~-------~s~W~D~S~F 203 (558)
.|+++|-..|.....+.++-.+..+|. .+-.+.|||.-+. .+|-.|+|+.
T Consensus 38 ~G~~~v~i~GDVsaV~aAv~ag~~aa~~~g~lvs~~VIprP~~~l~~~l~~~~~~~~~~~ 97 (103)
T 3mpy_A 38 GGLCTAMVRGDVAACKAATDAGAAAAQRIGELVSVHVIPRPHGDLEEVFPIGLKGDSSNL 97 (103)
T ss_dssp TTEEEEEEEECHHHHHHHHHHHHHHHHHHSCEEEEEEESSCCTHHHHHSSCCSSSCCSCC
T ss_pred CCEEEEEEEEeHHHHHHHHHHHHHHHhhcCCEEEEEEeCCCCHHHHHHhccCcCCCcccc
Confidence 489999999999999999999998886 4667899998764 3455566553
No 9
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=14.81 E-value=89 Score=24.01 Aligned_cols=20 Identities=10% Similarity=-0.223 Sum_probs=17.2
Q ss_pred cCCCCCCCHHHHHHHHhhcC
Q 008637 381 INGKCPLTPLEVGLMLRGMG 400 (558)
Q Consensus 381 ~~G~CPLTPeEvgl~LralG 400 (558)
.+...|.|+||..+|++++-
T Consensus 9 r~~~~~WT~eE~~~F~~~~~ 28 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKFI 28 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHH
Confidence 36778999999999999874
No 10
>2g7j_A Putative cytoplasmic protein; STR72, autostructure, structural genomics, PSI, protein STRU initiative; NMR {Salmonella typhimurium} SCOP: d.198.5.1
Probab=13.68 E-value=68 Score=28.59 Aligned_cols=19 Identities=37% Similarity=0.545 Sum_probs=16.7
Q ss_pred CCHHHHHHHHhhcCCCCCc
Q 008637 387 LTPLEVGLMLRGMGFDKNT 405 (558)
Q Consensus 387 LTPeEvgl~LralGf~~~T 405 (558)
|-|.||+.+|...||..+.
T Consensus 3 LRPDEVArVLEk~GF~~D~ 21 (124)
T 2g7j_A 3 LRPDEVARVLEKAGFTVDV 21 (124)
T ss_dssp CCHHHHHHHHHHTTCEEEE
T ss_pred cChHHHHHHHHHcCceEEE
Confidence 6799999999999998654
Done!