Query 008637
Match_columns 558
No_of_seqs 221 out of 407
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 08:12:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008637.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008637hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ihoa2 d.3.1.18 (A:156-293) A 33.1 3.1 0.00022 35.6 -0.9 36 185-220 31-71 (138)
2 d1l5ia_ d.89.1.4 (A:) DNA-bind 26.3 30 0.0021 28.9 4.2 29 384-413 17-45 (118)
3 d1oqya2 a.5.2.1 (A:317-360) DN 20.2 6.5 0.00047 27.9 -1.1 26 388-413 1-30 (44)
4 d1vjna_ d.157.1.4 (A:) Hypothe 18.0 46 0.0033 28.9 4.0 42 171-218 142-184 (209)
5 d1wgla_ a.5.2.4 (A:) Toll-inte 16.4 17 0.0012 27.1 0.4 49 417-470 9-57 (59)
6 d2fr5a1 c.97.1.1 (A:11-146) mo 14.7 45 0.0033 27.8 2.9 100 327-439 28-134 (136)
7 d1mn3a_ a.5.2.4 (A:) Vacuolar 14.3 20 0.0015 26.2 0.4 14 418-431 13-26 (54)
8 d2g7ja1 d.198.5.1 (A:1-112) Pu 14.3 33 0.0024 28.0 1.7 18 387-404 3-20 (112)
9 d1jjcb2 a.6.1.1 (B:400-474) Do 13.5 44 0.0032 25.0 2.2 23 379-402 13-35 (75)
10 d1okga1 c.46.1.2 (A:7-162) 3-m 11.8 96 0.007 26.1 4.2 29 382-410 66-95 (156)
No 1
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=33.11 E-value=3.1 Score=35.56 Aligned_cols=36 Identities=36% Similarity=0.662 Sum_probs=29.5
Q ss_pred eEEecccCCCccccCCC-----CCCcccChHHHHHhccccc
Q 008637 185 TLVIPNFHYHSIWRDPS-----KFRDIYDEDYFTSVLQNDV 220 (558)
Q Consensus 185 TLVlP~l~~~s~W~D~S-----~F~dIFD~dhFI~sL~~dV 220 (558)
-||||...-+++|+++- -=+.|||-|.|--..|.-|
T Consensus 31 YLVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaAv 71 (138)
T d2ihoa2 31 YLVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAAV 71 (138)
T ss_dssp EECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHHH
T ss_pred EEEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHHH
Confidence 39999999999999852 2579999999988877553
No 2
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=26.27 E-value=30 Score=28.87 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHhhcCCCCCcEEEEeecc
Q 008637 384 KCPLTPLEVGLMLRGMGFDKNTYIFLASGK 413 (558)
Q Consensus 384 ~CPLTPeEvgl~LralGf~~~T~IYlAsGe 413 (558)
+||||+||+...|+.|-=+.+. .||..++
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~v~r 45 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEEEcc
Confidence 6999999999999998765544 4665444
No 3
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.23 E-value=6.5 Score=27.94 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=18.6
Q ss_pred CHHHHHH--HHhhcCCCCCc--EEEEeecc
Q 008637 388 TPLEVGL--MLRGMGFDKNT--YIFLASGK 413 (558)
Q Consensus 388 TPeEvgl--~LralGf~~~T--~IYlAsGe 413 (558)
||+|... =|.+|||+++. .+|+|-.+
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 4555443 47899999987 46888766
No 4
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=18.05 E-value=46 Score=28.92 Aligned_cols=42 Identities=29% Similarity=0.434 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhcceEEecccCCCccccC-CCCCCcccChHHHHHhccc
Q 008637 171 SICNAVAVAGYLNATLVIPNFHYHSIWRD-PSKFRDIYDEDYFTSVLQN 218 (558)
Q Consensus 171 ~IcDaVavArlLNATLVlP~l~~~s~W~D-~S~F~dIFD~dhFI~sL~~ 218 (558)
.--+|+.+|+.|++-.|||-= |+. ...| ++=..|.|++.++.
T Consensus 142 ~~~ea~~~~~~l~pk~viP~H-----~~t~~~~~-~~~~~~~f~~~~~~ 184 (209)
T d1vjna_ 142 GPKEAKEVADLLNAKVIIPMH-----YKTKYLKF-NLLPVDDFLKLFDS 184 (209)
T ss_dssp CHHHHHHHHHHTTCSEEEEES-----CCCSSCCT-TCCCTHHHHTTSSC
T ss_pred CHHHHHHHHHHhCCCEEEEec-----cCCccccc-CcCCHHHHHHHhhh
Confidence 456899999999999999962 432 2223 45557888887663
No 5
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.39 E-value=17 Score=27.09 Aligned_cols=49 Identities=22% Similarity=0.366 Sum_probs=28.6
Q ss_pred ccccchhHHHhCCcccccccCCChhhhccccccccccccceeeeeecCcceeec
Q 008637 417 AEKTMAPLIEMFPNLQTKEMLASEEELAPFKNFSSRMAAVDYTVCLHSEVFVTT 470 (558)
Q Consensus 417 g~~~m~pL~~~FPnl~tKe~L~s~eEL~pf~~~ss~~AALDYiVcl~SDVFv~t 470 (558)
-++.+..|++|||++-. +.+-. =|. .+..+..+|+|=+.-..-+.|-|+
T Consensus 9 ~Ee~i~~LkeMFP~~D~-~vI~~--VL~--a~~G~vd~aid~LL~Msd~~~gp~ 57 (59)
T d1wgla_ 9 SEEDLKAIQDMFPNMDQ-EVIRS--VLE--AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp CHHHHHHHHHHCSSSCH-HHHHH--HHT--TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cHHHHHHHHHHCCCCCH-HHHHH--HHH--HcCCCHHHHHHHHHhcCCCCcCCC
Confidence 35679999999999842 22211 111 123455677776666655555554
No 6
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.74 E-value=45 Score=27.78 Aligned_cols=100 Identities=19% Similarity=0.323 Sum_probs=56.0
Q ss_pred EEEeeccchhhhhhcccc-----cC-CChhHHHHHHHHHHhccccccCCCCcccCchhhhcCCCCCCCHHHH-HHHHhhc
Q 008637 327 ISVHLRFEEDMVAFSCCV-----FD-GGEREKEDMKEARERGWKGKFTKPGRVIRPGAIRINGKCPLTPLEV-GLMLRGM 399 (558)
Q Consensus 327 iAlHLRfE~DMlAfsgC~-----~~-~~~~E~~eL~~~R~~~w~~k~~~~~~~i~~~~~R~~G~CPLTPeEv-gl~Lral 399 (558)
|+-=++.+ |=-.|.||. |+ +-.+|+-.+.++-...=+ ++ +. ..+.... .+. +++|=-. --+|..
T Consensus 28 VGAa~~~~-dG~i~~G~NvEnasy~~~iCAEr~Ai~~a~~~g~~-~~-~~-~~~~~~~---~~~-~~~PCG~CRQ~l~E- 98 (136)
T d2fr5a1 28 VGAALLTG-DGRIFSGCNIENACYPLGVCAERTAIQKAISEGYK-DF-RA-IAISSDL---QEE-FISPCGACRQVMRE- 98 (136)
T ss_dssp EEEEEEET-TSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCC-CE-EE-EEEEESC---SSS-CCCCCHHHHHHHHH-
T ss_pred EEEEEEeC-CCCEEEEEeecccccccccchhheeeeeeeccCCc-cE-EE-EEeeccc---CCC-CCCcchhhhHHHHh-
Confidence 65666665 455566665 22 234898888777532111 00 00 0011100 111 2333221 234555
Q ss_pred CCCCCcEEEEeeccccCccccchhHHHhCCcccccccCCC
Q 008637 400 GFDKNTYIFLASGKIYNAEKTMAPLIEMFPNLQTKEMLAS 439 (558)
Q Consensus 400 Gf~~~T~IYlAsGeiyGg~~~m~pL~~~FPnl~tKe~L~s 439 (558)
|..++.||+...+ |+.....|+++.|.-+++++|-.
T Consensus 99 -~~~~~~i~~~~~~---~~~~~~tl~eLLP~~F~~~~L~~ 134 (136)
T d2fr5a1 99 -FGTDWAVYMTKPD---GTFVVRTVQELLPASFGPEDLQK 134 (136)
T ss_dssp -TCSSCEEEEECTT---SCEEEEEHHHHSTTCCCGGGGTC
T ss_pred -hCCCceEEEECCC---CCEEEeEHHHhCcCCCChHHhCc
Confidence 4578899998876 56667789999999999988753
No 7
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.29 E-value=20 Score=26.18 Aligned_cols=14 Identities=36% Similarity=0.802 Sum_probs=11.7
Q ss_pred cccchhHHHhCCcc
Q 008637 418 EKTMAPLIEMFPNL 431 (558)
Q Consensus 418 ~~~m~pL~~~FPnl 431 (558)
+..++.|++|||++
T Consensus 13 ~e~~~~Lk~MFP~~ 26 (54)
T d1mn3a_ 13 KDTLNTLQNMFPDM 26 (54)
T ss_dssp HHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHCCCC
Confidence 34688999999987
No 8
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=14.28 E-value=33 Score=28.00 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=16.1
Q ss_pred CCHHHHHHHHhhcCCCCC
Q 008637 387 LTPLEVGLMLRGMGFDKN 404 (558)
Q Consensus 387 LTPeEvgl~LralGf~~~ 404 (558)
|-|.||+.+|+..||..+
T Consensus 3 LRPDEVArVLe~aGF~~d 20 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVD 20 (112)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred cChHHHHHHHHHcCceEE
Confidence 679999999999999764
No 9
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=13.51 E-value=44 Score=25.05 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=19.5
Q ss_pred hhcCCCCCCCHHHHHHHHhhcCCC
Q 008637 379 IRINGKCPLTPLEVGLMLRGMGFD 402 (558)
Q Consensus 379 ~R~~G~CPLTPeEvgl~LralGf~ 402 (558)
.+..|.. ++++|+..+|+.|||.
T Consensus 13 ~~~lG~~-i~~~~i~~~L~~Lg~~ 35 (75)
T d1jjcb2 13 NRLLGTS-YPEAEQIAILKRLGCR 35 (75)
T ss_dssp HHHHTCC-CCHHHHHHHHHHTTCE
T ss_pred HHHhCCC-CCHHHHHHHHHHcCCc
Confidence 3556766 9999999999999996
No 10
>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}
Probab=11.80 E-value=96 Score=26.09 Aligned_cols=29 Identities=14% Similarity=0.046 Sum_probs=22.5
Q ss_pred CCCCCC-CHHHHHHHHhhcCCCCCcEEEEe
Q 008637 382 NGKCPL-TPLEVGLMLRGMGFDKNTYIFLA 410 (558)
Q Consensus 382 ~G~CPL-TPeEvgl~LralGf~~~T~IYlA 410 (558)
.|.=|| +|++....|+.+|.+++|.|-|=
T Consensus 66 ~~~~~lP~~~~~~~~l~~lGI~~~~~VVvY 95 (156)
T d1okga1 66 TARHPLPPCAEFIDWCMANGMAGELPVLCY 95 (156)
T ss_dssp CCSSCCCCHHHHHHHHHHTTCSSSSCEEEE
T ss_pred CCccccCCHHHHHHHHHhccccCCceEEEE
Confidence 343344 78999999999999999976663
Done!