BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008638
(558 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/455 (81%), Positives = 407/455 (89%), Gaps = 2/455 (0%)
Query: 86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEG 145
A GQ+ VIGAVVDV+FDEGLPPIL ALEV RLVLEVAQH+GE VRTIAMDGTEG
Sbjct: 9 ATGQIVAVIGAVVDVQFDEGLPPILNALEVQGRESRLVLEVAQHLGESTVRTIAMDGTEG 68
Query: 146 LVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQAT 205
LVRGQ+VL++G+PI +PVG TLGRIMNVIGEPIDE+G +KT+ + PIH EAP F+E +
Sbjct: 69 LVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEMSV 128
Query: 206 EQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265
EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGE
Sbjct: 129 EQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE 188
Query: 266 RTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA 325
RTREGNDLY EMIESGVI L K A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD
Sbjct: 189 RTREGNDLYHEMIESGVINL--KDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQ 246
Query: 326 EGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITS 385
EGQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G +QERITTTKKGSITS
Sbjct: 247 EGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITS 306
Query: 386 VQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEE 445
VQAIYVPADDLTDPAPATTFAHLDATTVLSR I+ELGIYPAVDPLDSTSR++ P+I+G E
Sbjct: 307 VQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSE 366
Query: 446 HYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTG 505
HY+ ARGVQK+LQ+YK+LQDIIAILGMDELSE+DKLTV+RARKIQRFLSQPF VAEVFTG
Sbjct: 367 HYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTG 426
Query: 506 APGKYVELKESIASFQGVLDGKYDDLPEQSFYMVG 540
GK V LKE+I FQ +L G YD LPEQ+FYMVG
Sbjct: 427 HMGKLVPLKETIKGFQQILAGDYDHLPEQAFYMVG 461
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/453 (81%), Positives = 406/453 (89%), Gaps = 2/453 (0%)
Query: 88 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
G++ VIGAVVDV+FDEGLPPIL ALEV RLVLEVAQH+GE VRTIAMDGTEGLV
Sbjct: 13 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 72
Query: 148 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQ 207
RGQ+VL++G+PI +PVG TLGRIMNVIGEPIDE+G +KT+ + IH EAP FVE + EQ
Sbjct: 73 RGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQ 132
Query: 208 QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267
+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGERT
Sbjct: 133 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 192
Query: 268 REGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEG 327
REGNDLY EMIESGVI L D A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EG
Sbjct: 193 REGNDLYHEMIESGVINLKD--ATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 250
Query: 328 QDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQ 387
QDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G +QERITTTKKGSITSVQ
Sbjct: 251 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQ 310
Query: 388 AIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHY 447
AIYVPADDLTDPAPATTFAHLDATTVLSR I+ELGIYPAVDPLDSTSR++ P+I+G EHY
Sbjct: 311 AIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHY 370
Query: 448 NTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAP 507
+ ARGVQK+LQ+YK+LQDIIAILGMDELSE+DKLTV+RARKIQRFLSQPF VAEVFTG
Sbjct: 371 DVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHL 430
Query: 508 GKYVELKESIASFQGVLDGKYDDLPEQSFYMVG 540
GK V LKE+I FQ +L G+YD LPEQ+FYMVG
Sbjct: 431 GKLVPLKETIKGFQQILAGEYDHLPEQAFYMVG 463
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/453 (81%), Positives = 406/453 (89%), Gaps = 2/453 (0%)
Query: 88 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
G++ VIGAVVDV+FDEGLPPIL ALEV RLVLEVAQH+GE VRTIAMDGTEGLV
Sbjct: 15 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 74
Query: 148 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQ 207
RGQ+VL++G+PI +PVG TLGRIMNVIGEPIDE+G +KT+ + IH EAP FVE + EQ
Sbjct: 75 RGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQ 134
Query: 208 QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267
+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGERT
Sbjct: 135 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 194
Query: 268 REGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEG 327
REGNDLY EMIESGVI L D A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EG
Sbjct: 195 REGNDLYHEMIESGVINLKD--ATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 252
Query: 328 QDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQ 387
QDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G +QERITTTKKGSITSVQ
Sbjct: 253 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQ 312
Query: 388 AIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHY 447
AIYVPADDLTDPAPATTFAHLDATTVLSR I+ELGIYPAVDPLDSTSR++ P+I+G EHY
Sbjct: 313 AIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHY 372
Query: 448 NTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAP 507
+ ARGVQK+LQ+YK+LQDIIAILGMDELSE+DKLTV+RARKIQRFLSQPF VAEVFTG
Sbjct: 373 DVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHL 432
Query: 508 GKYVELKESIASFQGVLDGKYDDLPEQSFYMVG 540
GK V LKE+I FQ +L G+YD LPEQ+FYMVG
Sbjct: 433 GKLVPLKETIKGFQQILAGEYDHLPEQAFYMVG 465
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/453 (81%), Positives = 406/453 (89%), Gaps = 2/453 (0%)
Query: 88 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
G++ VIGAVVDV+FDEGLPPIL ALEV RLVLEVAQH+GE VRTIAMDGTEGLV
Sbjct: 15 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 74
Query: 148 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQ 207
RGQ+VL++G+PI +PVG TLGRIMNVIGEPIDE+G +KT+ + IH EAP FVE + EQ
Sbjct: 75 RGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQ 134
Query: 208 QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267
+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGERT
Sbjct: 135 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 194
Query: 268 REGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEG 327
REGNDLY EMIESGVI L D A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EG
Sbjct: 195 REGNDLYHEMIESGVINLKD--ATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 252
Query: 328 QDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQ 387
QDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G +QERITTTKKGSITSVQ
Sbjct: 253 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQ 312
Query: 388 AIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHY 447
AIYVPADDLTDPAPATTFAHLDATTVLSR I+ELGIYPAVDPLDSTSR++ P+I+G EHY
Sbjct: 313 AIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHY 372
Query: 448 NTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAP 507
+ ARGVQK+LQ+YK+LQDIIAILGMDELSE+DKLTV+RARKIQRFLSQPF VAEVFTG
Sbjct: 373 DVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHL 432
Query: 508 GKYVELKESIASFQGVLDGKYDDLPEQSFYMVG 540
GK V LKE+I FQ +L G+YD LPEQ+FYMVG
Sbjct: 433 GKLVPLKETIKGFQQILAGEYDHLPEQAFYMVG 465
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/453 (81%), Positives = 406/453 (89%), Gaps = 2/453 (0%)
Query: 88 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
G++ VIGAVVDV+FDEGLPPIL ALEV RLVLEVAQH+GE VRTIAMDGTEGLV
Sbjct: 61 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 120
Query: 148 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQ 207
RGQ+VL++G+PI +PVG TLGRIMNVIGEPIDE+G +KT+ + IH EAP FVE + EQ
Sbjct: 121 RGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQ 180
Query: 208 QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267
+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGERT
Sbjct: 181 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 240
Query: 268 REGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEG 327
REGNDLY EMIESGVI L K A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EG
Sbjct: 241 REGNDLYHEMIESGVINL--KDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 298
Query: 328 QDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQ 387
QDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G +QERITTTKKGSITSVQ
Sbjct: 299 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQ 358
Query: 388 AIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHY 447
AIYVPADDLTDPAPATTFAHLDATTVLSR I+ELGIYPAVDPLDSTSR++ P+I+G EHY
Sbjct: 359 AIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHY 418
Query: 448 NTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAP 507
+ ARGVQK+LQ+YK+LQDIIAILGMDELSE+DKLTV+RARKIQRFLSQPF VAEVFTG
Sbjct: 419 DVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHL 478
Query: 508 GKYVELKESIASFQGVLDGKYDDLPEQSFYMVG 540
GK V LKE+I FQ +L G+YD LPEQ+FYMVG
Sbjct: 479 GKLVPLKETIKGFQQILAGEYDHLPEQAFYMVG 511
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/453 (81%), Positives = 406/453 (89%), Gaps = 2/453 (0%)
Query: 88 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
G++ VIGAVVDV+FDEGLPPIL ALEV RLVLEVAQH+GE VRTIAMDGTEGLV
Sbjct: 3 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 62
Query: 148 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQ 207
RGQ+VL++G+PI +PVG TLGRIMNVIGEPIDE+G +KT+ + IH EAP FVE + EQ
Sbjct: 63 RGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQ 122
Query: 208 QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267
+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGERT
Sbjct: 123 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 182
Query: 268 REGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEG 327
REGNDLY EMIESGVI L D A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EG
Sbjct: 183 REGNDLYHEMIESGVINLKD--ATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 240
Query: 328 QDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQ 387
QDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G +QERITTTKKGSITSVQ
Sbjct: 241 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQ 300
Query: 388 AIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHY 447
AIYVPADDLTDPAPATTFAHLDATTVLSR I+ELGIYPAVDPLDSTSR++ P+I+G EHY
Sbjct: 301 AIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHY 360
Query: 448 NTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAP 507
+ ARGVQK+LQ+YK+LQDIIAILGMDELSE+DKLTV+RARKIQRFLSQPF VAEVFTG
Sbjct: 361 DVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHL 420
Query: 508 GKYVELKESIASFQGVLDGKYDDLPEQSFYMVG 540
GK V LKE+I FQ +L G+YD LPEQ+FYMVG
Sbjct: 421 GKLVPLKETIKGFQQILAGEYDHLPEQAFYMVG 453
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/453 (81%), Positives = 405/453 (89%), Gaps = 2/453 (0%)
Query: 88 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
G++ VIGAVVDV+FDEGLPPIL ALEV RLVLEVAQH+GE VRTIAMDGTEGLV
Sbjct: 15 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 74
Query: 148 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQ 207
RGQ+VL++G+PI +PVG TLGRIMNVIGEPIDE+G +KT+ + IH EAP FVE + EQ
Sbjct: 75 RGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQ 134
Query: 208 QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267
+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGERT
Sbjct: 135 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 194
Query: 268 REGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEG 327
REGNDLY EMIESGVI L D A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EG
Sbjct: 195 REGNDLYHEMIESGVINLKD--ATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 252
Query: 328 QDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQ 387
QDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G +QERITTTKKGSITSVQ
Sbjct: 253 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQ 312
Query: 388 AIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHY 447
AI VPADDLTDPAPATTFAHLDATTVLSR I+ELGIYPAVDPLDSTSR++ P+I+G EHY
Sbjct: 313 AIXVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHY 372
Query: 448 NTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAP 507
+ ARGVQK+LQ+YK+LQDIIAILGMDELSE+DKLTV+RARKIQRFLSQPF VAEVFTG
Sbjct: 373 DVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHL 432
Query: 508 GKYVELKESIASFQGVLDGKYDDLPEQSFYMVG 540
GK V LKE+I FQ +L G+YD LPEQ+FYMVG
Sbjct: 433 GKLVPLKETIKGFQQILAGEYDHLPEQAFYMVG 465
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/455 (77%), Positives = 396/455 (87%), Gaps = 4/455 (0%)
Query: 88 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGL 146
G+V VIGA+VDV F++ LP IL ALE+ +LVLEVAQH+GE VRTIAMDGTEGL
Sbjct: 44 GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGL 103
Query: 147 VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATE 206
VRG++VL+TG PI+VPVGR TLGRI+NVIGEPIDE+G +K++ PIH + P+F EQ+T
Sbjct: 104 VRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTS 163
Query: 207 QQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266
+IL TGIKVVDLLAPY RGGKIGLFGGAGVGKTV I ELINN+AKAHGGFSVF GVGER
Sbjct: 164 AEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGER 223
Query: 267 TREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAE 326
TREGNDLYREM E+GVI L + +SK ALV+GQMNEPPGARARV LTGLT+AE+FRD E
Sbjct: 224 TREGNDLYREMKETGVINL---EGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEE 280
Query: 327 GQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSV 386
GQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G LQERITTTKKGS+TSV
Sbjct: 281 GQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSV 340
Query: 387 QAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEH 446
QA+YVPADDLTDPAPATTFAHLDATTVLSR ISELGIYPAVDPLDS SR+L ++G+EH
Sbjct: 341 QAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEH 400
Query: 447 YNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGA 506
Y+ A VQ+ LQ YK+LQDIIAILGMDELSE DKLTV RARKIQRFLSQPF VAEVFTG
Sbjct: 401 YDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGI 460
Query: 507 PGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGG 541
PGK V LK+++ASF+ VL+GKYD++PE +FYMVGG
Sbjct: 461 PGKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGG 495
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/455 (77%), Positives = 396/455 (87%), Gaps = 4/455 (0%)
Query: 88 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGL 146
G+V VIGA+VDV F++ LP IL ALE+ +LVLEVAQH+GE VRTIAMDGTEGL
Sbjct: 17 GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGL 76
Query: 147 VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATE 206
VRG++VL+TG PI+VPVGR TLGRI+NVIGEPIDE+G +K++ PIH + P+F EQ+T
Sbjct: 77 VRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTS 136
Query: 207 QQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266
+IL TGIKVVDLLAPY RGGKIGLFGGAGVGKTV I ELINN+AKAHGGFSVF GVGER
Sbjct: 137 AEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGER 196
Query: 267 TREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAE 326
TREGNDLYREM E+GVI L + +SK ALV+GQMNEPPGARARV LTGLT+AE+FRD E
Sbjct: 197 TREGNDLYREMKETGVINL---EGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEE 253
Query: 327 GQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSV 386
GQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G LQERITTTKKGS+TSV
Sbjct: 254 GQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSV 313
Query: 387 QAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEH 446
QA+YVPADDLTDPAPATTFAHLDATTVLSR ISELGIYPAVDPLDS SR+L ++G+EH
Sbjct: 314 QAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEH 373
Query: 447 YNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGA 506
Y+ A VQ+ LQ YK+LQDIIAILGMDELSE DKLTV RARKIQRFLSQPF VAEVFTG
Sbjct: 374 YDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGI 433
Query: 507 PGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGG 541
PGK V LK+++ASF+ VL+GKYD++PE +FYMVGG
Sbjct: 434 PGKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGG 468
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/455 (77%), Positives = 396/455 (87%), Gaps = 4/455 (0%)
Query: 88 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGL 146
G+V VIGA+VDV F++ LP IL ALE+ +LVLEVAQH+GE VRTIAMDGTEGL
Sbjct: 11 GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGL 70
Query: 147 VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATE 206
VRG++VL+TG PI+VPVGR TLGRI+NVIGEPIDE+G +K++ PIH + P+F EQ+T
Sbjct: 71 VRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTS 130
Query: 207 QQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266
+IL TGIKVVDLLAPY RGGKIGLFGGAGVGKTV I ELINN+AKAHGGFSVF GVGER
Sbjct: 131 AEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGER 190
Query: 267 TREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAE 326
TREGNDLYREM E+GVI L + +SK ALV+GQMNEPPGARARV LTGLT+AE+FRD E
Sbjct: 191 TREGNDLYREMKETGVINL---EGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEE 247
Query: 327 GQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSV 386
GQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G LQERITTTKKGS+TSV
Sbjct: 248 GQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSV 307
Query: 387 QAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEH 446
QA+YVPADDLTDPAPATTFAHLDATTVLSR ISELGIYPAVDPLDS SR+L ++G+EH
Sbjct: 308 QAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEH 367
Query: 447 YNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGA 506
Y+ A VQ+ LQ YK+LQDIIAILGMDELSE DKLTV RARKIQRFLSQPF VAEVFTG
Sbjct: 368 YDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGI 427
Query: 507 PGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGG 541
PGK V LK+++ASF+ VL+GKYD++PE +FYMVGG
Sbjct: 428 PGKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGG 462
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/455 (77%), Positives = 396/455 (87%), Gaps = 4/455 (0%)
Query: 88 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGL 146
G+V VIGA+VDV F++ LP IL ALE+ +LVLEVAQH+GE VRTIAMDGTEGL
Sbjct: 6 GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGL 65
Query: 147 VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATE 206
VRG++VL+TG PI+VPVGR TLGRI+NVIGEPIDE+G +K++ PIH + P+F EQ+T
Sbjct: 66 VRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTS 125
Query: 207 QQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266
+IL TGIKVVDLLAPY RGGKIGLFGGAGVGKTV I ELINN+AKAHGGFSVF GVGER
Sbjct: 126 AEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGER 185
Query: 267 TREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAE 326
TREGNDLYREM E+GVI L + +SK ALV+GQMNEPPGARARV LTGLT+AE+FRD E
Sbjct: 186 TREGNDLYREMKETGVINL---EGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEE 242
Query: 327 GQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSV 386
GQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G LQERITTTKKGS+TSV
Sbjct: 243 GQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSV 302
Query: 387 QAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEH 446
QA+YVPADDLTDPAPATTFAHLDATTVLSR ISELGIYPAVDPLDS SR+L ++G+EH
Sbjct: 303 QAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEH 362
Query: 447 YNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGA 506
Y+ A VQ+ LQ YK+LQDIIAILGMDELSE DKLTV RARKIQRFLSQPF VAEVFTG
Sbjct: 363 YDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGI 422
Query: 507 PGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGG 541
PGK V LK+++ASF+ VL+GKYD++PE +FYMVGG
Sbjct: 423 PGKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGG 457
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/455 (77%), Positives = 396/455 (87%), Gaps = 4/455 (0%)
Query: 88 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGL 146
G+V VIGA+VDV F++ LP IL ALE+ +LVLEVAQH+GE VRTIAMDGTEGL
Sbjct: 6 GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGL 65
Query: 147 VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATE 206
VRG++VL+TG PI+VPVGR TLGRI+NVIGEPIDE+G +K++ PIH + P+F EQ+T
Sbjct: 66 VRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTS 125
Query: 207 QQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266
+IL TGIKVVDLLAPY RGGKIGLFGGAGVGKTV I ELINN+AKAHGGFSVF GVGER
Sbjct: 126 AEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGER 185
Query: 267 TREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAE 326
TREGNDLYREM E+GVI L + +SK ALV+GQMNEPPGARARV LTGLT+AE+FRD E
Sbjct: 186 TREGNDLYREMKETGVINL---EGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEE 242
Query: 327 GQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSV 386
GQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G LQERITTTKKGS+TSV
Sbjct: 243 GQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSV 302
Query: 387 QAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEH 446
QA+YVPADDLTDPAPATTFAHLDATTVLSR ISELGIYPAVDPLDS SR+L ++G+EH
Sbjct: 303 QAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEH 362
Query: 447 YNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGA 506
Y+ A VQ+ LQ YK+LQDIIAILGMDELSE DKLTV RARKIQRFLSQPF VAEVFTG
Sbjct: 363 YDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGI 422
Query: 507 PGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGG 541
PGK V LK+++ASF+ VL+GKYD++PE +FYMVGG
Sbjct: 423 PGKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGG 457
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/455 (76%), Positives = 395/455 (86%), Gaps = 4/455 (0%)
Query: 88 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGL 146
G+V VIGA+VDV F++ LP IL ALE+ +LVLEVAQH+GE VRTIAMDGTEGL
Sbjct: 17 GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGL 76
Query: 147 VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATE 206
VRG++VL+TG PI+VPVGR TLGRI+NVIGEPIDE+G +K++ PIH + P+F EQ+T
Sbjct: 77 VRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTS 136
Query: 207 QQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266
+IL TGIKVVDLLAPY RGGKIGLFGGAGVGKTV I ELINN+AKAHGGFSVF GVGER
Sbjct: 137 AEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGER 196
Query: 267 TREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAE 326
TREGNDLYREM E+GVI L + +SK ALV+GQMNEPPGARARV LTGLT+AE+FRD E
Sbjct: 197 TREGNDLYREMKETGVINL---EGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEE 253
Query: 327 GQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSV 386
GQDVLLFIDNIFRFTQA SEVSALLGRIPSA GYQPTLATD+G LQERITTTKKGS+TSV
Sbjct: 254 GQDVLLFIDNIFRFTQAGSEVSALLGRIPSAFGYQPTLATDMGLLQERITTTKKGSVTSV 313
Query: 387 QAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEH 446
QA+YVPADDLTDPAPATTFAHLDATTVLSR ISELGIYPAVDPLDS SR+L ++G+EH
Sbjct: 314 QAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEH 373
Query: 447 YNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGA 506
Y+ A VQ+ LQ YK+LQDIIAILGMDELSE DKLTV RARKIQRFLSQPF VAEVFTG
Sbjct: 374 YDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGI 433
Query: 507 PGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGG 541
PGK V LK+++ASF+ VL+GKYD++PE +FYMVGG
Sbjct: 434 PGKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGG 468
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/455 (70%), Positives = 380/455 (83%), Gaps = 10/455 (2%)
Query: 88 GQVCQVIGAVVDVRFDEG-LPPILTALEVV-DHSVRLVLEVAQHMGEGVVRTIAMDGTEG 145
G++ QV+G VVD++F+ G LP I A+ + L +E A H+G+ VVR +AM T+G
Sbjct: 4 GRIIQVMGPVVDIQFESGQLPDIYNAITIERPQGGTLTVEAAVHLGDNVVRCVAMASTDG 63
Query: 146 LVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQAT 205
LVRG ++TG+PI+VPVG+ TLGR+ NV+GEPIDE+G++ E PIHR AP F E +T
Sbjct: 64 LVRGLEAVDTGAPISVPVGKATLGRVFNVLGEPIDEQGEVNAEERHPIHRPAPEFEELST 123
Query: 206 EQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265
+IL TGIKV+DLLAPY +GGKIGLFGGAGVGKTVLI ELINNVA+ HGG SVFAGVGE
Sbjct: 124 ADEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAQEHGGLSVFAGVGE 183
Query: 266 RTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA 325
RTREGNDLY EM +SGVI SK ++V+GQMNEPPGAR RV LTGLT+AE+FRD
Sbjct: 184 RTREGNDLYHEMKDSGVI--------SKTSMVFGQMNEPPGARLRVALTGLTMAEYFRDR 235
Query: 326 EGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITS 385
EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G LQERIT+TKKGSITS
Sbjct: 236 EGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSITS 295
Query: 386 VQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEE 445
+QAIYVPADD TDPAPATTFAHLDATT L R+++E+GIYPAVDPL STSR+LSP ++GEE
Sbjct: 296 IQAIYVPADDYTDPAPATTFAHLDATTNLERKLAEMGIYPAVDPLASTSRILSPAVVGEE 355
Query: 446 HYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTG 505
HY ARGVQ+VLQ Y +LQDIIAILGMDELS++DKL VARARKIQRFLSQPFHVAE FTG
Sbjct: 356 HYRVARGVQQVLQRYNDLQDIIAILGMDELSDEDKLIVARARKIQRFLSQPFHVAEQFTG 415
Query: 506 APGKYVELKESIASFQGVLDGKYDDLPEQSFYMVG 540
PGKYV +KE++ F+ +L+GK+D+LPE++FYMVG
Sbjct: 416 MPGKYVPVKETVRGFKEILEGKHDNLPEEAFYMVG 450
>pdb|3OAA|D Chain D, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|E Chain E, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|F Chain F, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|L Chain L, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|M Chain M, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|N Chain N, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|T Chain T, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|U Chain U, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|V Chain V, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|BB Chain b, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|CC Chain c, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|DD Chain d, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 459
Score = 627 bits (1616), Expect = e-180, Method: Compositional matrix adjust.
Identities = 310/456 (67%), Positives = 371/456 (81%), Gaps = 10/456 (2%)
Query: 86 AIGQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTE 144
A G++ QVIGAVVDV F + +P + ALEV + + RLVLEV Q +G G+VRTIAM ++
Sbjct: 1 ATGKIVQVIGAVVDVEFPQDAVPRVYDALEVQNGNERLVLEVQQQLGGGIVRTIAMGSSD 60
Query: 145 GLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQA 204
GL RG V + PI VPVG TLGRIMNV+GEP+D KG++ E IHR AP++ E +
Sbjct: 61 GLRRGLDVKDLEHPIEVPVGEATLGRIMNVLGEPVDMKGEIGEEERWAIHRAAPSYEELS 120
Query: 205 TEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG 264
Q++L TGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELI N+A H G+SVFAGVG
Sbjct: 121 NSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVG 180
Query: 265 ERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD 324
ERTREGND Y EM +S VI K +LVYGQMNEPPG R RV LTGLT+AE FRD
Sbjct: 181 ERTREGNDFYHEMTDSNVI--------DKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRD 232
Query: 325 AEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSIT 384
EG+DVLLF+DNI+R+T A +EVSALLGR+PSAVGYQPTLA ++G LQERIT+TK GSIT
Sbjct: 233 -EGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSIT 291
Query: 385 SVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGE 444
SVQA+YVPADDLTDP+PATTFAHLDAT VLSRQI+ LGIYPAVDPLDSTSR L P ++G+
Sbjct: 292 SVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQ 351
Query: 445 EHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFT 504
EHY+TARGVQ +LQ Y+ L+DIIAILGMDELSE+DKL VARARKIQRFLSQPF VAEVFT
Sbjct: 352 EHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQRFLSQPFFVAEVFT 411
Query: 505 GAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVG 540
G+PGKYV LK++I F+G+++G+YD LPEQ+FYMVG
Sbjct: 412 GSPGKYVSLKDTIRGFKGIMEGEYDHLPEQAFYMVG 447
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 621 bits (1601), Expect = e-178, Method: Compositional matrix adjust.
Identities = 317/463 (68%), Positives = 373/463 (80%), Gaps = 19/463 (4%)
Query: 88 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVR--------LVLEVAQHMGEGVVRTI 138
G+V QV+G VVDV+F+ G LP I AL++ H R L LEVA H+G+ VRTI
Sbjct: 4 GRVIQVMGPVVDVKFENGHLPAIYNALKI-QHKARNENEVDIDLTLEVALHLGDDTVRTI 62
Query: 139 AMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTE-HYLPIHREA 197
AM T+GL+RG V++TG+PI+VPVG+VTLGR+ NV+GEPID +GD+ + PIHR A
Sbjct: 63 AMASTDGLIRGMEVIDTGAPISVPVGQVTLGRVFNVLGEPIDLEGDIPADARRDPIHRPA 122
Query: 198 PAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGF 257
P F E ATE +IL TGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELI+N+A+ HGG
Sbjct: 123 PKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182
Query: 258 SVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLT 317
SVFAGVGERTREGNDLY EM +SGVI SK A+V+GQMNEPPGAR RV LTGLT
Sbjct: 183 SVFAGVGERTREGNDLYHEMKDSGVI--------SKTAMVFGQMNEPPGARMRVALTGLT 234
Query: 318 VAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT 377
+AE+FRD +GQD LLFIDNIFRFTQA SEVSALLGR+PSA+GYQPTLAT++G LQERIT+
Sbjct: 235 MAEYFRDEQGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERITS 294
Query: 378 TKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRML 437
T KGSITS+QAIYVPADD TDPAPATTF+HLDATT L R+++E+GIYPAVDPL STSR L
Sbjct: 295 TAKGSITSIQAIYVPADDYTDPAPATTFSHLDATTNLERKLAEMGIYPAVDPLVSTSRAL 354
Query: 438 SPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPF 497
+P I+GEEHY AR VQ+ L+ YK LQDIIAILGMDELS++DKL V RAR+IQ FLSQ F
Sbjct: 355 APEIVGEEHYQVARKVQQTLERYKELQDIIAILGMDELSDEDKLVVHRARRIQFFLSQNF 414
Query: 498 HVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVG 540
HVAE FTG PG YV +KE++ F+ +L+GKYD LPE F +VG
Sbjct: 415 HVAEQFTGQPGSYVPVKETVRGFKEILEGKYDHLPEDRFRLVG 457
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 498
Score = 607 bits (1564), Expect = e-174, Method: Compositional matrix adjust.
Identities = 315/464 (67%), Positives = 368/464 (79%), Gaps = 7/464 (1%)
Query: 84 KGAIGQVCQVIGAVVDVRFDEG-LPPILTAL-----EVVDHSVRLVLEVAQHMGEGVVRT 137
K +G++ Q+IG V++V F G +P I AL + + + EV Q +G VR
Sbjct: 17 KKNLGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRA 76
Query: 138 IAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREA 197
+AM T+GL RG V++TG+P++VPVG TLGRI NV+GEP+D + T PIHR A
Sbjct: 77 VAMSATDGLTRGMEVIDTGAPLSVPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRSA 136
Query: 198 PAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGF 257
PAF + T+ I TGIKVV+LLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAHGG
Sbjct: 137 PAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGV 196
Query: 258 SVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLT 317
SVF GVGERTREGNDLY EM ESGVI A+SK ALVYGQMNEPPGAR RVGLT LT
Sbjct: 197 SVFGGVGERTREGNDLYMEMKESGVIN-EQNIAESKVALVYGQMNEPPGARMRVGLTALT 255
Query: 318 VAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT 377
+AE+FRD QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G LQERIT+
Sbjct: 256 MAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITS 315
Query: 378 TKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRML 437
TK+GSITS+QA+YVPADDLTDPAPATTFAHLDATTVLSR ++ GIYPAVDPLDSTS ML
Sbjct: 316 TKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTML 375
Query: 438 SPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPF 497
P I+GEEHY A+ V++ LQ YK LQDIIAILG+DELSE+D+LTVARARKI+RFLSQPF
Sbjct: 376 QPRIVGEEHYEIAQRVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPF 435
Query: 498 HVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGG 541
VAEVFTG+PGKYV L E+I FQ +L G+ D LPEQ+FY+VG
Sbjct: 436 FVAEVFTGSPGKYVGLAETIRGFQLILSGELDSLPEQAFYLVGN 479
>pdb|2OBL|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
pdb|2OBM|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
Length = 347
Score = 145 bits (367), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 172/339 (50%), Gaps = 24/339 (7%)
Query: 163 VGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHR----EAPAFVEQATEQQILVTGIKVVD 218
VG LGR+++ IG P++ YLP R E P + + Q + G++ +D
Sbjct: 7 VGDALLGRLIDGIGRPMESN---IVAPYLPFERSLYAEPPDPLLRQVIDQPFILGVRAID 63
Query: 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMI 278
L G +IG+F G+GVGK+ L+ + N A V A +GER RE N+ +
Sbjct: 64 GLLTCGIGQRIGIFAGSGVGKSTLLGMICNG---ASADIIVLALIGERGREVNEFLALLP 120
Query: 279 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIF 338
+S + SKC LV + P R + T T+AE+FRD +G++VLL +D++
Sbjct: 121 QSTL---------SKCVLVVTTSDRPALERMKAAFTATTIAEYFRD-QGKNVLLMMDSVT 170
Query: 339 RFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTD 398
R+ +A +V G G+ P++ + L L ER KGSIT++ + + +D++ D
Sbjct: 171 RYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVND 230
Query: 399 PAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQ 458
P + LD VL+R+++E +PA+D S SR++ +++ EH A +K++
Sbjct: 231 PIGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASRVMH-NVVTSEHLRAAAECKKLIA 289
Query: 459 NYKNLQDIIAI--LGMDELSEDDKLTVARARKIQRFLSQ 495
YKN + +I I M + E DK + + IQ F+ Q
Sbjct: 290 TYKNPELLIRIGEYTMGQDPEADK-AIKNRKLIQNFIQQ 327
>pdb|2DPY|A Chain A, Crystal Structure Of The Flagellar Type Iii Atpase Flii
pdb|2DPY|B Chain B, Crystal Structure Of The Flagellar Type Iii Atpase Flii
Length = 438
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/351 (28%), Positives = 172/351 (49%), Gaps = 42/351 (11%)
Query: 138 IAMDGTEGLVRGQRV---------LNTGSPITVPVGRVTLGRIMNVIGEPID-------- 180
+ ++ EG++ G RV L +G +P+G LGR+++ G+P+D
Sbjct: 62 MPLEEVEGILPGARVYARNGHGDGLQSGK--QLPLGPALLGRVLDGGGKPLDGLPAPDTL 119
Query: 181 EKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240
E G L T + P+ R + +L TG++ ++ L RG ++GLF G+GVGK+
Sbjct: 120 ETGALITPPFNPLQR--------TPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKS 171
Query: 241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQ 300
VL + ++ +A V +GER RE D ++ ++ ++
Sbjct: 172 VL-LGMMARYTRAD--VIVVGLIGERGREVKDFIENIL--------GPDGRARSVVIAAP 220
Query: 301 MNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGY 360
+ P R + +AE FRD GQ VLL +D++ R+ A E++ +G P+ GY
Sbjct: 221 ADVSPLLRMQGAAYATRIAEDFRD-RGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGY 279
Query: 361 QPTLATDLGGLQERITTTKKG--SITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQI 418
P++ L L ER G SIT+ + DD DP + A LD VLSR++
Sbjct: 280 PPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRL 339
Query: 419 SELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAI 469
+E G YPA+D S SR ++ ++ E+HY R +++L +++ +D++++
Sbjct: 340 AEAGHYPAIDIEASISRAMT-ALITEQHYARVRLFKQLLSSFQRNRDLVSV 389
>pdb|3GQB|B Chain B, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|D Chain D, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 464
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 159/347 (45%), Gaps = 24/347 (6%)
Query: 163 VGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAP 222
V + LGR N IG+PID + E LPI V + +Q + TGI +D++
Sbjct: 84 VSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNT 143
Query: 223 YQRGGKIGLFGGAGVGKTVLIMELINNVA----------KAHGGFSVFAGVGERTREGND 272
RG K+ +F G+G+ + ++ K VFA +G RE +
Sbjct: 144 LVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSY 203
Query: 273 LYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLL 332
+E +G + S+ L + ++P R LTVAE+ VL+
Sbjct: 204 FIQEFERTGAL--------SRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLV 255
Query: 333 FIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQER--ITTTKKGSITSVQAIY 390
+ ++ +++A E+ A IP GY + TDL + ER + KKGS+T + +
Sbjct: 256 ILTDMTNYSEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVVEGKKGSVTQIPILS 315
Query: 391 VPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHI----LGEEH 446
+P DD T P P T + LSR++ GIYP +DPL S SR+++ + E+H
Sbjct: 316 MPDDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMNNGVGKGKTREDH 375
Query: 447 YNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFL 493
+ + N +++ ++AI+G D L+E+D+ + A +RF
Sbjct: 376 KQVSDQLYSAYANGVDIRKLVAIIGEDALTENDRRYLQFADAFERFF 422
>pdb|3A5C|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|D Chain D, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|E Chain E, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|F Chain F, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 478
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 158/347 (45%), Gaps = 24/347 (6%)
Query: 163 VGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAP 222
V + LGR N IG+PID + E LPI V + +Q + TGI +D++
Sbjct: 84 VSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNT 143
Query: 223 YQRGGKIGLFGGAGVGKTVLIMELINNVA----------KAHGGFSVFAGVGERTREGND 272
RG K+ +F G+G+ + ++ K VFA +G RE +
Sbjct: 144 LVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSY 203
Query: 273 LYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLL 332
+E +G + S+ L + ++P R LTVAE+ VL+
Sbjct: 204 FIQEFERTGAL--------SRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLV 255
Query: 333 FIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQER--ITTTKKGSITSVQAIY 390
+ ++ + +A E+ A IP GY + TDL + ER + KKGS+T + +
Sbjct: 256 ILTDMTNYCEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVVEGKKGSVTQIPILS 315
Query: 391 VPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHI----LGEEH 446
+P DD T P P T + LSR++ GIYP +DPL S SR+++ + E+H
Sbjct: 316 MPDDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMNNGVGKGKTREDH 375
Query: 447 YNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFL 493
+ + N +++ ++AI+G D L+E+D+ + A +RF
Sbjct: 376 KQVSDQLYSAYANGVDIRKLVAIIGEDALTENDRRYLQFADAFERFF 422
>pdb|3A5C|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|A Chain A, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|B Chain B, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|C Chain C, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 578
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/363 (27%), Positives = 167/363 (46%), Gaps = 33/363 (9%)
Query: 179 IDEKGDLKTEHYLPIHREAPAFVEQATEQQI-LVTGIKVVDLLAPYQRGGKIGLFGGAGV 237
+++ +LK H P+ R P V++ + +TG++++D+L P GG + G G
Sbjct: 175 LEDGTELKMYHTWPVRRARP--VQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGS 232
Query: 238 GKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALV 297
GKTV L ++ V+ G GER E D+ E E K G + L+
Sbjct: 233 GKTVTQQSLAK---WSNADVVVYVGCGERGNEMTDVLVEFPELTDPKTGGPLM-HRTVLI 288
Query: 298 YGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSA 357
N P AR G+T+AE+FRD +G V L D+ R+ +A E+S+ L +P+
Sbjct: 289 ANTSNMPVAAREASIYVGVTIAEYFRD-QGFSVALMADSTSRWAEALREISSRLEEMPAE 347
Query: 358 VGYQPTLATDLGGLQERITTT-----KKGSITSVQAIYVPADDLTDPAPATT------FA 406
GY P LA L ER ++G++T V A+ P D+++P +T F
Sbjct: 348 EGYPPYLAARLAAFYERAGKVITLGGEEGAVTIVGAVSPPGGDMSEPVTQSTLRIVGAFW 407
Query: 407 HLDATTVLSRQISELGIYPAVDPLDSTSRM---LSPHI---LGEEHYNTARGVQKVLQNY 460
LDA+ R +PA++ S S L P + E++ + ++LQ
Sbjct: 408 RLDASLAFRRH------FPAINWNGSYSLFTSALDPWYRENVAEDYPELRDAISELLQRE 461
Query: 461 KNLQDIIAILGMDELSEDDKLTVARARKIQR-FLSQ-PFHVAEVFTGAPGKYVELKESIA 518
LQ+I+ ++G D L + ++L + R I+ FL Q +H + + Y +K +A
Sbjct: 462 AGLQEIVQLVGPDALQDAERLVIEVGRIIREDFLQQNAYHEVDAYCSMKKAYGIMKMILA 521
Query: 519 SFQ 521
++
Sbjct: 522 FYK 524
>pdb|3GQB|A Chain A, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|C Chain C, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 578
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 99/363 (27%), Positives = 168/363 (46%), Gaps = 33/363 (9%)
Query: 179 IDEKGDLKTEHYLPIHREAPAFVEQATEQQI-LVTGIKVVDLLAPYQRGGKIGLFGGAGV 237
+++ +LK H P+ R P V++ + +TG++++D+L P GG + G G
Sbjct: 175 LEDGTELKMYHTWPVRRARP--VQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGS 232
Query: 238 GKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALV 297
GK+V L ++ V+ G GER E D+ E E K G + L+
Sbjct: 233 GKSVTQQSLAK---WSNADVVVYVGSGERGNEMTDVLVEFPELTDPKTGGPLM-HRTVLI 288
Query: 298 YGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSA 357
N P AR G+T+AE+FRD +G V L D+ R+ +A E+S+ L +P+
Sbjct: 289 ANTSNMPVAAREASIYVGVTIAEYFRD-QGFSVALMADSTSRWAEALREISSRLEEMPAE 347
Query: 358 VGYQPTLATDLGGLQERITTT-----KKGSITSVQAIYVPADDLTDPAPATT------FA 406
GY P LA L ER ++G++T V A+ P D+++P +T F
Sbjct: 348 EGYPPYLAARLAAFYERAGKVITLGGEEGAVTIVGAVSPPGGDMSEPVTQSTLRIVGAFW 407
Query: 407 HLDATTVLSRQISELGIYPAVDPLDSTSRM---LSPHI---LGEEHYNTARGVQKVLQNY 460
LDA+ R +PA++ S S L P + E++ + ++LQ
Sbjct: 408 RLDASLAFRRH------FPAINWNGSYSLFTSALDPWYRENVAEDYPELRDAISELLQRE 461
Query: 461 KNLQDIIAILGMDELSEDDKLTVARARKIQR-FLSQ-PFHVAEVFTGAPGKYVELKESIA 518
LQ+I+ ++G D L + ++L + R I+ FL Q +H + ++ Y +K +A
Sbjct: 462 AGLQEIVQLVGPDALQDAERLVIEVGRIIREDFLQQNAYHEVDAYSSMKKAYGIMKMILA 521
Query: 519 SFQ 521
++
Sbjct: 522 FYK 524
>pdb|3VR6|D Chain D, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|E Chain E, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|F Chain F, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 465
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/376 (25%), Positives = 167/376 (44%), Gaps = 19/376 (5%)
Query: 140 MDGTEGL-VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP 198
+GT G+ ++ V G P+ + V +GR+ + +G P D ++ E YL I+ E
Sbjct: 64 FEGTSGINLKNSSVRFLGHPLQLGVSEDMIGRVFDGLGRPKDNGPEILPEKYLDINGEVI 123
Query: 199 AFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINN--VAKAHGG 256
+ + + + TGI +D L RG K+ +F G+G+ L ++ V +
Sbjct: 124 NPIARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDD 183
Query: 257 FS-VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTG 315
F+ VFA +G E + ++G I + + N+P R
Sbjct: 184 FAVVFAAIGITFEEAEFFMEDFRQTGAI--------DRSVMFMNLANDPAIERIATPRMA 235
Query: 316 LTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERI 375
LT AE+ +G VL+ + ++ + +A E+SA +P GY L T+L L ER
Sbjct: 236 LTAAEYLAYEKGMHVLVIMTDMTNYAEALREISAARREVPGRRGYPGYLYTNLATLFERA 295
Query: 376 TTTK--KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDST 433
+ KGS+T + + +P DD T P P T + +L+R++ + GI P +D L S
Sbjct: 296 GRIRGLKGSVTQIPILTMPEDDKTHPIPDLTGYITEGQIILTRELYKSGIQPPIDVLPSL 355
Query: 434 SRMLSPHI----LGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKI 489
SR+ E+H T + K +++ +LG LS+ DK+ A +
Sbjct: 356 SRLKDKGTGAGKTREDHAATMNQLFAAYAQGKQAKELAVVLGESALSDIDKIYAKFAERF 415
Query: 490 QR-FLSQPFHVAEVFT 504
+ +++Q F+ T
Sbjct: 416 ENEYVNQGFYTNRTIT 431
>pdb|3MFY|A Chain A, Structural Characterization Of The Subunit A Mutant F236a
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 156/357 (43%), Gaps = 19/357 (5%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
G T+ ++ + P E +LK P+ + P + E+ + L+TG +V+D P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
+GG + G AG GKTV +L + ++ G GER E D+ E +
Sbjct: 225 AKGGTAAIPGPAGSGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343
K G K + L+ N P AR TG+T+AE+FRD G DV L D+ R+ +A
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAEA 339
Query: 344 NSEVSALLGRIPSAVGYQPTLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDL 396
E+S L +P GY LA+ L ER + + GS++ + A+ P D
Sbjct: 340 LREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Query: 397 TDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSP-----HILGEEHYNTAR 451
++P T + L ++ +PA++ L S S + H + + R
Sbjct: 400 SEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMR 459
Query: 452 -GVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAP 507
+LQ LQ+I+ I+G D L E ++ + AR ++ Q EV T P
Sbjct: 460 DKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCP 516
>pdb|3VR6|A Chain A, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|B Chain B, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|C Chain C, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 600
Score = 111 bits (278), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 93/348 (26%), Positives = 163/348 (46%), Gaps = 25/348 (7%)
Query: 184 DLKTEHYLPIHREAPAFVEQATEQQI-LVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242
+L P+ R P ++Q + ++TG +V+D P +GG + G G GKTV+
Sbjct: 191 ELTMMQKWPVRRGRP--IKQKLNPDVPMITGQRVIDTFFPVTKGGAAAVPGPFGAGKTVV 248
Query: 243 IMELINNVAKAHG-GFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQM 301
+ +AK V+ G GER E D+ E E G+ + + L+
Sbjct: 249 Q----HQIAKWSDVDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLME-RTVLIANTS 303
Query: 302 NEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQ 361
N P AR TG+T+AE+FRD G DV + D+ R+ +A E+S L +P GY
Sbjct: 304 NMPVAAREASIYTGITIAEYFRDM-GYDVAIMADSTSRWAEALREMSGRLEEMPGDEGYP 362
Query: 362 PTLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVL 414
L + L ER + ++GSIT++ A+ D+++P T + L
Sbjct: 363 AYLGSRLAEYYERSGRVIALGSDQREGSITAISAVSPSGGDISEPVTQNTLRVVKVFWGL 422
Query: 415 SRQISELGIYPAVDPLDSTSRMLSP------HILGEEHYNTARGVQKVLQNYKNLQDIIA 468
+++ +P+++ + S S + IL ++ + ++LQ + L +I+
Sbjct: 423 DSSLAQKRHFPSINWIQSYSLYSTEVGRYMDQILQQDWSDMVTEGMRILQEEEQLNEIVR 482
Query: 469 ILGMDELSEDDKLTVARARKIQR-FLSQ-PFHVAEVFTGAPGKYVELK 514
++G+D LS++D+LT+ A+ I+ +L Q F + FT ++ LK
Sbjct: 483 LVGIDSLSDNDRLTLEVAKSIREDYLQQNAFDDVDTFTSREKQFNMLK 530
>pdb|3M4Y|A Chain A, Structural Characterization Of The Subunit A Mutant P235a
Of The A-Atp Synthase
Length = 588
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 155/357 (43%), Gaps = 19/357 (5%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
G T+ ++ + P E +LK P+ + P + E+ + L+TG +V+D P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
+GG + G G GKTV +L + ++ G GER E D+ E +
Sbjct: 225 AKGGTAAIPGAFGSGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343
K G K + L+ N P AR TG+T+AE+FRD G DV L D+ R+ +A
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAEA 339
Query: 344 NSEVSALLGRIPSAVGYQPTLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDL 396
E+S L +P GY LA+ L ER + + GS++ + A+ P D
Sbjct: 340 LREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Query: 397 TDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSP-----HILGEEHYNTAR 451
++P T + L ++ +PA++ L S S + H + + R
Sbjct: 400 SEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMR 459
Query: 452 -GVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAP 507
+LQ LQ+I+ I+G D L E ++ + AR ++ Q EV T P
Sbjct: 460 DKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCP 516
>pdb|3IKJ|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Mutant S238a Of The A1ao Atp
Synthase
Length = 588
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 155/357 (43%), Gaps = 19/357 (5%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
G T+ ++ + P E +LK P+ + P + E+ + L+TG +V+D P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
+GG + G G GKTV +L + ++ G GER E D+ E +
Sbjct: 225 AKGGTAAIPGPFGAGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343
K G K + L+ N P AR TG+T+AE+FRD G DV L D+ R+ +A
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAEA 339
Query: 344 NSEVSALLGRIPSAVGYQPTLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDL 396
E+S L +P GY LA+ L ER + + GS++ + A+ P D
Sbjct: 340 LREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Query: 397 TDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSP-----HILGEEHYNTAR 451
++P T + L ++ +PA++ L S S + H + + R
Sbjct: 400 SEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMR 459
Query: 452 -GVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAP 507
+LQ LQ+I+ I+G D L E ++ + AR ++ Q EV T P
Sbjct: 460 DKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCP 516
>pdb|3SDZ|A Chain A, Structural Characterization Of The Subunit A Mutant F427w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 155/357 (43%), Gaps = 19/357 (5%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
G T+ ++ + P E +LK P+ + P + E+ + L+TG +V+D P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
+GG + G G GKTV +L + ++ G GER E D+ E +
Sbjct: 225 AKGGTAAIPGPFGSGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343
K G K + L+ N P AR TG+T+AE+FRD G DV L D+ R+ +A
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAEA 339
Query: 344 NSEVSALLGRIPSAVGYQPTLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDL 396
E+S L +P GY LA+ L ER + + GS++ + A+ P D
Sbjct: 340 LREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Query: 397 TDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSP-----HILGEEHYNTAR 451
++P T + L ++ +PA++ L S S + H + + R
Sbjct: 400 SEPVVQNTLRVVKVFWALDADLARRRHWPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMR 459
Query: 452 -GVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAP 507
+LQ LQ+I+ I+G D L E ++ + AR ++ Q EV T P
Sbjct: 460 DKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCP 516
>pdb|1VDZ|A Chain A, Crystal Structure Of A-Type Atpase Catalytic Subunit A
From Pyrococcus Horikoshii Ot3
Length = 588
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 155/357 (43%), Gaps = 19/357 (5%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
G T+ ++ + P E +LK P+ + P + E+ + L+TG +V+D P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
+GG + G G GKTV +L + ++ G GER E D+ E +
Sbjct: 225 AKGGTAAIPGPFGSGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343
K G K + L+ N P AR TG+T+AE+FRD G DV L D+ R+ +A
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAEA 339
Query: 344 NSEVSALLGRIPSAVGYQPTLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDL 396
E+S L +P GY LA+ L ER + + GS++ + A+ P D
Sbjct: 340 LREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Query: 397 TDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSP-----HILGEEHYNTAR 451
++P T + L ++ +PA++ L S S + H + + R
Sbjct: 400 SEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMR 459
Query: 452 -GVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAP 507
+LQ LQ+I+ I+G D L E ++ + AR ++ Q EV T P
Sbjct: 460 DKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCP 516
>pdb|3I4L|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Amp-Pnp Of The A1ao Atp
Synthase
pdb|3I72|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With So4 Of The A1ao Atp Synthase
pdb|3I73|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Adp Of The A1ao Atp Synthase
pdb|3P20|A Chain A, Crystal Structure Of Vanadate Bound Subunit A Of The A1ao
Atp Synthase
Length = 588
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 155/357 (43%), Gaps = 19/357 (5%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
G T+ ++ + P E +LK P+ + P + E+ + L+TG +V+D P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
+GG + G G GKTV +L + ++ G GER E D+ E +
Sbjct: 225 AKGGTAAIPGPFGSGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343
K G K + L+ N P AR TG+T+AE+FRD G DV L D+ R+ +A
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAEA 339
Query: 344 NSEVSALLGRIPSAVGYQPTLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDL 396
E+S L +P GY LA+ L ER + + GS++ + A+ P D
Sbjct: 340 LREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Query: 397 TDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSP-----HILGEEHYNTAR 451
++P T + L ++ +PA++ L S S + H + + R
Sbjct: 400 SEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMR 459
Query: 452 -GVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAP 507
+LQ LQ+I+ I+G D L E ++ + AR ++ Q EV T P
Sbjct: 460 DKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCP 516
>pdb|3SE0|A Chain A, Structural Characterization Of The Subunit A Mutant F508w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 155/357 (43%), Gaps = 19/357 (5%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
G T+ ++ + P E +LK P+ + P + E+ + L+TG +V+D P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
+GG + G G GKTV +L + ++ G GER E D+ E +
Sbjct: 225 AKGGTAAIPGPFGSGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343
K G K + L+ N P AR TG+T+AE+FRD G DV L D+ R+ +A
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAEA 339
Query: 344 NSEVSALLGRIPSAVGYQPTLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDL 396
E+S L +P GY LA+ L ER + + GS++ + A+ P D
Sbjct: 340 LREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Query: 397 TDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSP-----HILGEEHYNTAR 451
++P T + L ++ +PA++ L S S + H + + R
Sbjct: 400 SEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMR 459
Query: 452 -GVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAP 507
+LQ LQ+I+ I+G D L E ++ + AR ++ Q EV T P
Sbjct: 460 DKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAWDEVDTYCP 516
>pdb|3VR2|A Chain A, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|B Chain B, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|C Chain C, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|A Chain A, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|B Chain B, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|C Chain C, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|A Chain A, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|B Chain B, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|C Chain C, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|A Chain A, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|B Chain B, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|C Chain C, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 600
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/348 (26%), Positives = 160/348 (45%), Gaps = 25/348 (7%)
Query: 184 DLKTEHYLPIHREAPAFVEQATEQQI-LVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242
+L P+ R P ++Q + +TG +V+D P +GG + G G GKTV+
Sbjct: 191 ELTXXQKWPVRRGRP--IKQKLNPDVPXITGQRVIDTFFPVTKGGAAAVPGPFGAGKTVV 248
Query: 243 IMELINNVAKAHG-GFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQM 301
+ +AK V+ G GER E D+ E E G+ + + L+
Sbjct: 249 Q----HQIAKWSDVDLVVYVGCGERGNEXTDVVNEFPELIDPNTGESLXE-RTVLIANTS 303
Query: 302 NEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQ 361
N P AR TG+T+AE+FRD G DV + D+ R+ +A E S L P GY
Sbjct: 304 NXPVAAREASIYTGITIAEYFRDX-GYDVAIXADSTSRWAEALREXSGRLEEXPGDEGYP 362
Query: 362 PTLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVL 414
L + L ER + ++GSIT++ A+ D+++P T + L
Sbjct: 363 AYLGSRLAEYYERSGRVIALGSDQREGSITAISAVSPSGGDISEPVTQNTLRVVKVFWGL 422
Query: 415 SRQISELGIYPAVDPLDSTSRMLSP------HILGEEHYNTARGVQKVLQNYKNLQDIIA 468
+++ +P+++ + S S + IL ++ + ++LQ + L +I+
Sbjct: 423 DSSLAQKRHFPSINWIQSYSLYSTEVGRYXDQILQQDWSDXVTEGXRILQEEEQLNEIVR 482
Query: 469 ILGMDELSEDDKLTVARARKIQR-FLSQ-PFHVAEVFTGAPGKYVELK 514
++G+D LS++D+LT+ A+ I+ +L Q F + FT ++ LK
Sbjct: 483 LVGIDSLSDNDRLTLEVAKSIREDYLQQNAFDDVDTFTSREKQFNXLK 530
>pdb|3SSA|A Chain A, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
pdb|3SSA|B Chain B, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
Length = 460
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 161/349 (46%), Gaps = 17/349 (4%)
Query: 140 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 199
+GT GL + V+ TG + +P LGRI++ GEP D + + L I+ A
Sbjct: 57 FEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMN 116
Query: 200 FVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN--NVAKAHGGF 257
+ + + TGI +D RG K+ +F +G+ T + +++ +V + F
Sbjct: 117 PYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHTEIALQIARQASVPGSESAF 176
Query: 258 SV-FAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316
+V FA +G E + ++G ++ + + ++P R L
Sbjct: 177 AVVFAAMGITNEEAQYFMSDFEKTGALE--------RAVVFLNLADDPAVERIVTPRMAL 228
Query: 317 TVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQER-- 374
T AE+ G VL+ + +I + +A ++ A +P GY + TDL L ER
Sbjct: 229 TAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAG 288
Query: 375 ITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTS 434
I KGS+T + + +P DD+T P P + + V++R++ GIYP ++ L S S
Sbjct: 289 IVKGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLS 348
Query: 435 RMLSPHI----LGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDD 479
R+++ I E+H + + ++L+ ++AI+G + LSE D
Sbjct: 349 RLMNSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERD 397
>pdb|3QJY|A Chain A, Crystal Structure Of P-Loop G234a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 154/357 (43%), Gaps = 19/357 (5%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
G T+ ++ + P E +LK P+ + P + E+ + L+TG +V+D P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
+GG + G GKTV +L + ++ G GER E D+ E +
Sbjct: 225 AKGGTAAIPAPFGSGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343
K G K + L+ N P AR TG+T+AE+FRD G DV L D+ R+ +A
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAEA 339
Query: 344 NSEVSALLGRIPSAVGYQPTLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDL 396
E+S L +P GY LA+ L ER + + GS++ + A+ P D
Sbjct: 340 LREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Query: 397 TDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSP-----HILGEEHYNTAR 451
++P T + L ++ +PA++ L S S + H + + R
Sbjct: 400 SEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMR 459
Query: 452 -GVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAP 507
+LQ LQ+I+ I+G D L E ++ + AR ++ Q EV T P
Sbjct: 460 DKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCP 516
>pdb|3QIA|A Chain A, Crystal Structure Of P-Loop G237a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 154/357 (43%), Gaps = 19/357 (5%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
G T+ ++ + P E +LK P+ + P + E+ + L+TG +V+D P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
+GG + G GKTV +L + ++ G GER E D+ E +
Sbjct: 225 AKGGTAAIPGPFASGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343
K G K + L+ N P AR TG+T+AE+FRD G DV L D+ R+ +A
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAEA 339
Query: 344 NSEVSALLGRIPSAVGYQPTLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDL 396
E+S L +P GY LA+ L ER + + GS++ + A+ P D
Sbjct: 340 LREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Query: 397 TDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSP-----HILGEEHYNTAR 451
++P T + L ++ +PA++ L S S + H + + R
Sbjct: 400 SEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMR 459
Query: 452 -GVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAP 507
+LQ LQ+I+ I+G D L E ++ + AR ++ Q EV T P
Sbjct: 460 DKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCP 516
>pdb|3ND9|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 154/357 (43%), Gaps = 19/357 (5%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
G T+ ++ + P E +LK P+ + P + E+ + L+TG +V+D P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
+GG + G G GK V +L + ++ G GER E D+ E +
Sbjct: 225 AKGGTAAIPGPFGSGKAVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343
K G K + L+ N P AR TG+T+AE+FRD G DV L D+ R+ +A
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAEA 339
Query: 344 NSEVSALLGRIPSAVGYQPTLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDL 396
E+S L +P GY LA+ L ER + + GS++ + A+ P D
Sbjct: 340 LREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Query: 397 TDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSP-----HILGEEHYNTAR 451
++P T + L ++ +PA++ L S S + H + + R
Sbjct: 400 SEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMR 459
Query: 452 -GVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAP 507
+LQ LQ+I+ I+G D L E ++ + AR ++ Q EV T P
Sbjct: 460 DKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCP 516
>pdb|3QG1|A Chain A, Crystal Structure Of P-Loop G239a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 154/357 (43%), Gaps = 19/357 (5%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
G T+ ++ + P E +LK P+ + P + E+ + L+TG +V+D P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
+GG + G G KTV +L + ++ G GER E D+ E +
Sbjct: 225 AKGGTAAIPGPFGSAKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343
K G K + L+ N P AR TG+T+AE+FRD G DV L D+ R+ +A
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAEA 339
Query: 344 NSEVSALLGRIPSAVGYQPTLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDL 396
E+S L +P GY LA+ L ER + + GS++ + A+ P D
Sbjct: 340 LREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Query: 397 TDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSP-----HILGEEHYNTAR 451
++P T + L ++ +PA++ L S S + H + + R
Sbjct: 400 SEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMR 459
Query: 452 -GVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAP 507
+LQ LQ+I+ I+G D L E ++ + AR ++ Q EV T P
Sbjct: 460 DKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCP 516
>pdb|3ND8|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 154/357 (43%), Gaps = 19/357 (5%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
G T+ ++ + P E +LK P+ + P + E+ + L+TG +V+D P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
+GG + G G G TV +L + ++ G GER E D+ E +
Sbjct: 225 AKGGTAAIPGPFGSGATVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343
K G K + L+ N P AR TG+T+AE+FRD G DV L D+ R+ +A
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAEA 339
Query: 344 NSEVSALLGRIPSAVGYQPTLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDL 396
E+S L +P GY LA+ L ER + + GS++ + A+ P D
Sbjct: 340 LREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDF 399
Query: 397 TDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSP-----HILGEEHYNTAR 451
++P T + L ++ +PA++ L S S + H + + R
Sbjct: 400 SEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMR 459
Query: 452 -GVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAP 507
+LQ LQ+I+ I+G D L E ++ + AR ++ Q EV T P
Sbjct: 460 DKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCP 516
>pdb|2RKW|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|2RKW|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3EIU|A Chain A, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
pdb|3EIU|B Chain B, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
Length = 469
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 160/349 (45%), Gaps = 17/349 (4%)
Query: 140 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 199
+GT GL + V+ TG + +P LGRI++ GEP D + + L I+ A
Sbjct: 66 FEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMN 125
Query: 200 FVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN--NVAKAHGGF 257
+ + + TGI +D RG K+ +F +G+ + +++ +V + F
Sbjct: 126 PYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAF 185
Query: 258 SV-FAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316
+V FA +G E + ++G ++ + + ++P R L
Sbjct: 186 AVVFAAMGITNEEAQYFMSDFEKTGALE--------RAVVFLNLADDPAVERIVTPRMAL 237
Query: 317 TVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQER-- 374
T AE+ G VL+ + +I + +A ++ A +P GY + TDL L ER
Sbjct: 238 TAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAG 297
Query: 375 ITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTS 434
I KGS+T + + +P DD+T P P + + V++R++ GIYP ++ L S S
Sbjct: 298 IVKGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLS 357
Query: 435 RMLSPHI----LGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDD 479
R+++ I E+H + + ++L+ ++AI+G + LSE D
Sbjct: 358 RLMNSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERD 406
>pdb|3TGW|A Chain A, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
pdb|3TGW|B Chain B, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
Length = 460
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 160/349 (45%), Gaps = 17/349 (4%)
Query: 140 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 199
+GT GL + V+ TG + +P LGRI++ GEP D + + L I+ A
Sbjct: 57 FEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMN 116
Query: 200 FVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN--NVAKAHGGF 257
+ + + TGI +D RG K+ +F +G+ + +++ +V + F
Sbjct: 117 PYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPANEIALQIARQASVPGSESAF 176
Query: 258 SV-FAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316
+V FA +G E + ++G ++ + + ++P R L
Sbjct: 177 AVVFAAMGITNEEAQYFMSDFEKTGALE--------RAVVFLNLADDPAVERIVTPRMAL 228
Query: 317 TVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQER-- 374
T AE+ G VL+ + +I + +A ++ A +P GY + TDL L ER
Sbjct: 229 TAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAG 288
Query: 375 ITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTS 434
I KGS+T + + +P DD+T P P + + V++R++ GIYP ++ L S S
Sbjct: 289 IVKGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLS 348
Query: 435 RMLSPHI----LGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDD 479
R+++ I E+H + + ++L+ ++AI+G + LSE D
Sbjct: 349 RLMNSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERD 397
>pdb|3TIV|A Chain A, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
pdb|3TIV|B Chain B, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
Length = 460
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 160/349 (45%), Gaps = 17/349 (4%)
Query: 140 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 199
+GT GL + V+ TG + +P LGRI++ GEP D + + L I+ A
Sbjct: 57 FEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMN 116
Query: 200 FVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN--NVAKAHGGF 257
+ + + TGI +D RG K+ +F +G+ + +++ +V + F
Sbjct: 117 PYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHAEIALQIARQASVPGSESAF 176
Query: 258 SV-FAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316
+V FA +G E + ++G ++ + + ++P R L
Sbjct: 177 AVVFAAMGITNEEAQYFMSDFEKTGALE--------RAVVFLNLADDPAVERIVTPRMAL 228
Query: 317 TVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQER-- 374
T AE+ G VL+ + +I + +A ++ A +P GY + TDL L ER
Sbjct: 229 TAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAG 288
Query: 375 ITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTS 434
I KGS+T + + +P DD+T P P + + V++R++ GIYP ++ L S S
Sbjct: 289 IVKGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLS 348
Query: 435 RMLSPHI----LGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDD 479
R+++ I E+H + + ++L+ ++AI+G + LSE D
Sbjct: 349 RLMNSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERD 397
>pdb|2C61|A Chain A, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|2C61|B Chain B, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|3DSR|A Chain A, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
pdb|3DSR|B Chain B, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
Length = 469
Score = 108 bits (269), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 160/349 (45%), Gaps = 17/349 (4%)
Query: 140 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 199
+GT GL + V+ TG + +P LGRI++ GEP D + + L I+ A
Sbjct: 66 FEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMN 125
Query: 200 FVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN--NVAKAHGGF 257
+ + + TGI +D RG K+ +F +G+ + +++ +V + F
Sbjct: 126 PYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAF 185
Query: 258 SV-FAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316
+V FA +G E + ++G ++ + + ++P R L
Sbjct: 186 AVVFAAMGITNEEAQYFMSDFEKTGALE--------RAVVFLNLADDPAVERIVTPRMAL 237
Query: 317 TVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQER-- 374
T AE+ G VL+ + +I + +A ++ A +P GY + TDL L ER
Sbjct: 238 TAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAG 297
Query: 375 ITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTS 434
I KGS+T + + +P DD+T P P + + V++R++ GIYP ++ L S S
Sbjct: 298 IVKGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLS 357
Query: 435 RMLSPHI----LGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDD 479
R+++ I E+H + + ++L+ ++AI+G + LSE D
Sbjct: 358 RLMNSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERD 406
>pdb|3OAA|A Chain A, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|B Chain B, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|C Chain C, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|I Chain I, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|J Chain J, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|K Chain K, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Q Chain Q, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|R Chain R, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|S Chain S, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Y Chain Y, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Z Chain Z, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|AA Chain a, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 513
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 144/326 (44%), Gaps = 25/326 (7%)
Query: 126 VAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDL 185
+A ++ V + M L G +V TG + VPVGR LGR++N +G PID KG L
Sbjct: 62 IALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGPL 121
Query: 186 KTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME 245
+ + + AP +E+ + Q + TG K VD + P RG + + G GKT L ++
Sbjct: 122 DHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAID 181
Query: 246 LINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPP 305
I N + G ++ +G++ +++ R++ E G + + +V +E
Sbjct: 182 AIIN-QRDSGIKCIYVAIGQKASTISNVVRKLEEHGAL--------ANTIVVVATASESA 232
Query: 306 GARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLA 365
+ G + E+FRD G+D L+ D++ + A ++S LL R P + +
Sbjct: 233 ALQYLAPYAGCAMGEYFRD-RGEDALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVF 291
Query: 366 TDLGGLQERITTT---------------KKGSITSVQAIYVPADDLTDPAPATTFAHLDA 410
L ER K GS+T++ I A D++ P + D
Sbjct: 292 YLHSRLLERAARVNAEYVEAFTKGEVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDG 351
Query: 411 TTVLSRQISELGIYPAVDPLDSTSRM 436
L + GI PAV+P S SR+
Sbjct: 352 QIFLETNLFNAGIRPAVNPGISVSRV 377
>pdb|3VR2|D Chain D, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|E Chain E, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|F Chain F, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|D Chain D, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|E Chain E, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|F Chain F, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|D Chain D, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|E Chain E, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|F Chain F, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|D Chain D, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|E Chain E, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|F Chain F, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 465
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 96/376 (25%), Positives = 163/376 (43%), Gaps = 19/376 (5%)
Query: 140 MDGTEGL-VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP 198
+GT G+ ++ V G P+ + V +GR+ + +G P D ++ E YL I+ E
Sbjct: 64 FEGTSGINLKNSSVRFLGHPLQLGVSEDXIGRVFDGLGRPKDNGPEILPEKYLDINGEVI 123
Query: 199 AFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINN--VAKAHGG 256
+ + + + TGI +D L RG K+ +F G+G+ L ++ V +
Sbjct: 124 NPIARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDD 183
Query: 257 FS-VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTG 315
F+ VFA +G E + ++G I + N+P R
Sbjct: 184 FAVVFAAIGITFEEAEFFXEDFRQTGAI--------DRSVXFXNLANDPAIERIATPRXA 235
Query: 316 LTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERI 375
LT AE+ +G VL+ + + +A E+SA +P GY L T+L L ER
Sbjct: 236 LTAAEYLAYEKGXHVLVIXTDXTNYAEALREISAARREVPGRRGYPGYLYTNLATLFERA 295
Query: 376 TTTK--KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDST 433
+ KGS+T + + P DD T P P T + +L+R++ + GI P +D L S
Sbjct: 296 GRIRGLKGSVTQIPILTXPEDDKTHPIPDLTGYITEGQIILTRELYKSGIQPPIDVLPSL 355
Query: 434 SRMLSPHI----LGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKI 489
SR+ E+H T + K +++ +LG LS+ DK+ A +
Sbjct: 356 SRLKDKGTGAGKTREDHAATXNQLFAAYAQGKQAKELAVVLGESALSDIDKIYAKFAERF 415
Query: 490 QR-FLSQPFHVAEVFT 504
+ +++Q F+ T
Sbjct: 416 ENEYVNQGFYTNRTIT 431
>pdb|2QE7|A Chain A, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|B Chain B, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|C Chain C, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 502
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 107/419 (25%), Positives = 181/419 (43%), Gaps = 37/419 (8%)
Query: 123 VLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEK 182
V+ +AQ++ E V + + + G +V TG + VPVG LGR++N +G+P+D +
Sbjct: 59 VMGMAQNLEEDNVGVVILGPYTEIREGTQVKRTGRIMEVPVGEALLGRVVNPLGQPLDGR 118
Query: 183 GDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242
G ++T Y PI AP +++ + + L TGIK +D + P RG + + G GKT +
Sbjct: 119 GPIETAEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTI 178
Query: 243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIK-LGDKQADSKCALVYGQM 301
++ I N K ++ +G+ ++ +GV++ L A +V
Sbjct: 179 AIDTIIN-QKGQDVICIYVAIGQ---------KQSTVAGVVETLRQHDALDYTIVVTASA 228
Query: 302 NEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQ 361
+EP G + E+F +G+ L+ D++ + A E+S LL R P Y
Sbjct: 229 SEPAPLLYLAPYAGCAMGEYFM-YKGKHALVVYDDLSKQAAAYRELSLLLRRPPGREAYP 287
Query: 362 PTLATDLGGLQERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQ 417
+ L ER GS+T++ I A D++ P + D L
Sbjct: 288 GDVFYLHSRLLERAAKLSDEKGGGSLTALPFIETQAGDVSAYIPTNVISITDGQIFLESD 347
Query: 418 ISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQ----NYKNLQDIIAILGMD 473
+ G+ PAV+ S SR + G + V L+ Y+ LQ A G
Sbjct: 348 LFYSGVRPAVNVGISVSR-----VGGAAQIKAMKKVAGTLRLDLAQYRELQ-AFAQFG-- 399
Query: 474 ELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLP 532
S+ DK T A+ + +R E+ K + ++E + S V +G DD+P
Sbjct: 400 --SDLDKATQAKLNRGER-------TVEILKQDEHKPMPVEEQVISIYAVTNGFMDDIP 449
>pdb|1SKY|B Chain B, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 502
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 102/431 (23%), Positives = 179/431 (41%), Gaps = 42/431 (9%)
Query: 123 VLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEK 182
V+ +A ++ E V + + G+ G V TG + VPVG +GR++N +G+P+D
Sbjct: 59 VMGMALNLEENNVGIVILGPYTGIKEGDEVRRTGRIMEVPVGETLIGRVVNPLGQPVDGL 118
Query: 183 GDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242
G ++T PI AP +++ + + L TGIK +D L P RG + + G GKT +
Sbjct: 119 GPVETTETRPIESRAPGVMDRRSVHEPLQTGIKAIDALVPIGRGQRELIIGDRQTGKTSV 178
Query: 243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMN 302
++ I N K ++ +G++ + + V L A +V +
Sbjct: 179 AIDTIIN-QKDQNMICIYVAIGQK--------ESTVATVVETLAKHGAPDYTIVVTASAS 229
Query: 303 EPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQP 362
+P G+ + E+F G+ VL+ ID++ + A ++S LL R P Y
Sbjct: 230 QPAPLLFLAPYAGVAMGEYFM-IMGKHVLVVIDDLSKQAAAYRQLSLLLRRPPGREAYPG 288
Query: 363 TLATDLGGLQERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQI 418
+ L ER GS+T++ + A D++ P + D L +
Sbjct: 289 DIFYLHSRLLERAAKLSDAKGGGSLTALPFVETQAGDISAYIPTNVISITDGQIFLQSDL 348
Query: 419 SELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQ----NYKNLQDIIAILGMDE 474
G+ PA++ S SR + G + V L+ Y+ L+ A G D
Sbjct: 349 FFSGVRPAINAGLSVSR-----VGGAAQIKAMKKVAGTLRLDLAAYRELE-AFAQFGSD- 401
Query: 475 LSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLP-- 532
L + + VAR + L Q H + + +++ + + G DD+P
Sbjct: 402 LDKATQANVARGARTVEVLKQDLH----------QPIPVEKQVLIIYALTRGFLDDIPVE 451
Query: 533 -----EQSFYM 538
E+ FY+
Sbjct: 452 DVRRFEKEFYL 462
>pdb|2R9V|A Chain A, Crystal Structure Of Atp Synthase Subunit Alpha (Tm1612)
From Thermotoga Maritima At 2.10 A Resolution
Length = 515
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 103/412 (25%), Positives = 174/412 (42%), Gaps = 29/412 (7%)
Query: 126 VAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDL 185
VA ++ E V I + + + G V I VPVG LGR++N +GEP+D KG +
Sbjct: 75 VAFNLEEDNVGIIILGEYKDIKEGHTVRRLKRIIEVPVGEELLGRVVNPLGEPLDGKGPI 134
Query: 186 KTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME 245
+++ PI +AP + + L TGIK +D P RG + + G GKT + ++
Sbjct: 135 NAKNFRPIEIKAPGVIYRKPVDTPLQTGIKAIDSXIPIGRGQRELIIGDRQTGKTAIAID 194
Query: 246 LINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPP 305
I N K G + ++ +G++ + I + KL A +V ++P
Sbjct: 195 TIIN-QKGQGVYCIYVAIGQK--------KSAIARIIDKLRQYGAXEYTTVVVASASDPA 245
Query: 306 GARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLA 365
+ G E+F + G+D L+ D++ + A ++S L R P Y +
Sbjct: 246 SLQYIAPYAGCAXGEYFAYS-GRDALVVYDDLSKHAVAYRQLSLLXRRPPGREAYPGDIF 304
Query: 366 TDLGGLQERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISEL 421
L ER GS+T++ + A+D++ P + D L +
Sbjct: 305 YLHSRLLERAVRLNDKLGGGSLTALPIVETQANDISAYIPTNVISITDGQIYLEPGLFYA 364
Query: 422 GIYPAVDPLDSTSRM-LSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDK 480
G PA++ S SR+ S I + A ++ L Y+ L+ EL +
Sbjct: 365 GQRPAINVGLSVSRVGGSAQIKAXKQ--VAGXLRIDLAQYRELETFAQF--ATELDPATR 420
Query: 481 LTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLP 532
+ R +++ L Q E ++ P VE ++ + F GV G DDLP
Sbjct: 421 AQIIRGQRLXELLKQ-----EQYSPXP---VE-EQVVVLFAGV-RGYLDDLP 462
>pdb|2XND|A Chain A, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|B Chain B, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|C Chain C, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 492
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 140/307 (45%), Gaps = 21/307 (6%)
Query: 142 GTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF 200
G + L++ G V TG+ + VPVG LGR+++ +G ID KG + ++ + +AP
Sbjct: 59 GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 118
Query: 201 VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG---- 256
+ + + ++ + TGIK VD L P RG + + G GKT + ++ I N + + G
Sbjct: 119 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 178
Query: 257 ---FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313
+ ++ +G++ R + V +L D A +V ++ +
Sbjct: 179 KKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPY 230
Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQE 373
+G ++ E+FRD G+ L+ D++ + A ++S LL R P Y + L E
Sbjct: 231 SGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 289
Query: 374 RITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDP 429
R GS+T++ I A D++ P + D L ++ GI PA++
Sbjct: 290 RAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 349
Query: 430 LDSTSRM 436
S SR+
Sbjct: 350 GLSVSRV 356
>pdb|1OHH|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
Length = 487
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 140/307 (45%), Gaps = 21/307 (6%)
Query: 142 GTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF 200
G + L++ G V TG+ + VPVG LGR+++ +G ID KG + ++ + +AP
Sbjct: 54 GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 113
Query: 201 VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG---- 256
+ + + ++ + TGIK VD L P RG + + G GKT + ++ I N + + G
Sbjct: 114 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 173
Query: 257 ---FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313
+ ++ +G++ R + V +L D A +V ++ +
Sbjct: 174 KKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPY 225
Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQE 373
+G ++ E+FRD G+ L+ D++ + A ++S LL R P Y + L E
Sbjct: 226 SGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 284
Query: 374 RITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDP 429
R GS+T++ I A D++ P + D L ++ GI PA++
Sbjct: 285 RAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 344
Query: 430 LDSTSRM 436
S SR+
Sbjct: 345 GLSVSRV 351
>pdb|4B2Q|B Chain B, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|BB Chain b, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 486
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 105/419 (25%), Positives = 178/419 (42%), Gaps = 37/419 (8%)
Query: 138 IAMDGTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHRE 196
I + G++ LV+ G+ V TG+ + VPVG LGR+++ +G PID KG + +
Sbjct: 51 IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 110
Query: 197 APAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 256
AP + + + + + TG+K VD L P RG + + G GKT + ++ I N + + G
Sbjct: 111 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 170
Query: 257 -------FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARA 309
+ V+ VG++ R + V L A +V +E +
Sbjct: 171 SDESKKLYCVYVAVGQK--------RSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQY 222
Query: 310 RVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 369
T ++ E FRD G+ L+ D++ + A ++S LL R P Y +
Sbjct: 223 LAPFTAASIGEWFRD-NGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHS 281
Query: 370 GLQERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYP 425
L ER + GS+T++ I D++ P + D L ++ GI P
Sbjct: 282 RLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRP 341
Query: 426 AVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVAR 485
A++ S SR+ S + + A ++ L Y+ + A G D L K T+ R
Sbjct: 342 AINVGLSVSRVGSAAQV-KALKQVAGSLKLFLAQYREVA-AFAQFGSD-LDASTKQTLVR 398
Query: 486 ARKIQRFLSQ----PFHVAE----VFTGAPGKY--VELK---ESIASFQGVLDGKYDDL 531
++ + L Q P E ++ G G +EL E +SF L +++L
Sbjct: 399 GERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNEL 457
>pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
Length = 510
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 140/307 (45%), Gaps = 21/307 (6%)
Query: 142 GTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF 200
G + L++ G V TG+ + VPVG LGR+++ +G ID KG + ++ + +AP
Sbjct: 77 GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 136
Query: 201 VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG---- 256
+ + + ++ + TGIK VD L P RG + + G GKT + ++ I N + + G
Sbjct: 137 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 196
Query: 257 ---FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313
+ ++ +G++ R + V +L D A +V ++ +
Sbjct: 197 KKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPY 248
Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQE 373
+G ++ E+FRD G+ L+ D++ + A ++S LL R P Y + L E
Sbjct: 249 SGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 307
Query: 374 RITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDP 429
R GS+T++ I A D++ P + D L ++ GI PA++
Sbjct: 308 RAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 367
Query: 430 LDSTSRM 436
S SR+
Sbjct: 368 GLSVSRV 374
>pdb|4B2Q|A Chain A, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|C Chain C, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|AA Chain a, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|CC Chain c, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 485
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 105/419 (25%), Positives = 178/419 (42%), Gaps = 37/419 (8%)
Query: 138 IAMDGTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHRE 196
I + G++ LV+ G+ V TG+ + VPVG LGR+++ +G PID KG + +
Sbjct: 50 IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 109
Query: 197 APAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 256
AP + + + + + TG+K VD L P RG + + G GKT + ++ I N + + G
Sbjct: 110 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 169
Query: 257 -------FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARA 309
+ V+ VG++ R + V L A +V +E +
Sbjct: 170 SDESKKLYCVYVAVGQK--------RSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQY 221
Query: 310 RVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 369
T ++ E FRD G+ L+ D++ + A ++S LL R P Y +
Sbjct: 222 LAPFTAASIGEWFRD-NGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHS 280
Query: 370 GLQERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYP 425
L ER + GS+T++ I D++ P + D L ++ GI P
Sbjct: 281 RLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRP 340
Query: 426 AVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVAR 485
A++ S SR+ S + + A ++ L Y+ + A G D L K T+ R
Sbjct: 341 AINVGLSVSRVGSAAQV-KALKQVAGSLKLFLAQYREVA-AFAQFGSD-LDASTKQTLVR 397
Query: 486 ARKIQRFLSQ----PFHVAE----VFTGAPGKY--VELK---ESIASFQGVLDGKYDDL 531
++ + L Q P E ++ G G +EL E +SF L +++L
Sbjct: 398 GERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNEL 456
>pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase
pdb|1BMF|B Chain B, Bovine Mitochondrial F1-Atpase
pdb|1BMF|C Chain C, Bovine Mitochondrial F1-Atpase
pdb|1NBM|A Chain A, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|B Chain B, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|C Chain C, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1QO1|A Chain A, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|B Chain B, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|C Chain C, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|A Chain A, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|B Chain B, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|C Chain C, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|A Chain A, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|B Chain B, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|C Chain C, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|B Chain B, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|C Chain C, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|A Chain A, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|B Chain B, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|C Chain C, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|A Chain A, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|B Chain B, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|C Chain C, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|A Chain A, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|B Chain B, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|C Chain C, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|A Chain A, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|B Chain B, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|C Chain C, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2WSS|A Chain A, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|B Chain B, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|C Chain C, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|J Chain J, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|K Chain K, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|L Chain L, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|4ASU|A Chain A, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|B Chain B, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|C Chain C, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 510
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 140/307 (45%), Gaps = 21/307 (6%)
Query: 142 GTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF 200
G + L++ G V TG+ + VPVG LGR+++ +G ID KG + ++ + +AP
Sbjct: 77 GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 136
Query: 201 VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG---- 256
+ + + ++ + TGIK VD L P RG + + G GKT + ++ I N + + G
Sbjct: 137 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 196
Query: 257 ---FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313
+ ++ +G++ R + V +L D A +V ++ +
Sbjct: 197 KKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPY 248
Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQE 373
+G ++ E+FRD G+ L+ D++ + A ++S LL R P Y + L E
Sbjct: 249 SGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 307
Query: 374 RITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDP 429
R GS+T++ I A D++ P + D L ++ GI PA++
Sbjct: 308 RAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 367
Query: 430 LDSTSRM 436
S SR+
Sbjct: 368 GLSVSRV 374
>pdb|2W6E|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 553
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 140/307 (45%), Gaps = 21/307 (6%)
Query: 142 GTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF 200
G + L++ G V TG+ + VPVG LGR+++ +G ID KG + ++ + +AP
Sbjct: 120 GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 179
Query: 201 VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG---- 256
+ + + ++ + TGIK VD L P RG + + G GKT + ++ I N + + G
Sbjct: 180 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 239
Query: 257 ---FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313
+ ++ +G++ R + V +L D A +V ++ +
Sbjct: 240 KKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPY 291
Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQE 373
+G ++ E+FRD G+ L+ D++ + A ++S LL R P Y + L E
Sbjct: 292 SGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 350
Query: 374 RITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDP 429
R GS+T++ I A D++ P + D L ++ GI PA++
Sbjct: 351 RAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 410
Query: 430 LDSTSRM 436
S SR+
Sbjct: 411 GLSVSRV 417
>pdb|2JIZ|A Chain A, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|B Chain B, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|C Chain C, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|H Chain H, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|I Chain I, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|J Chain J, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|A Chain A, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|B Chain B, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|C Chain C, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|H Chain H, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|I Chain I, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|J Chain J, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|A Chain A, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|B Chain B, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|C Chain C, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|H Chain H, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|I Chain I, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|J Chain J, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|A Chain A, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|B Chain B, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|C Chain C, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1
Length = 510
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 140/307 (45%), Gaps = 21/307 (6%)
Query: 142 GTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF 200
G + L++ G V TG+ + VPVG LGR+++ +G ID KG + ++ + +AP
Sbjct: 77 GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 136
Query: 201 VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG---- 256
+ + + ++ + TGIK VD L P RG + + G GKT + ++ I N + + G
Sbjct: 137 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 196
Query: 257 ---FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313
+ ++ +G++ R + V +L D A +V ++ +
Sbjct: 197 KKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPY 248
Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQE 373
+G ++ E+FRD G+ L+ D++ + A ++S LL R P Y + L E
Sbjct: 249 SGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 307
Query: 374 RITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDP 429
R GS+T++ I A D++ P + D L ++ GI PA++
Sbjct: 308 RAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 367
Query: 430 LDSTSRM 436
S SR+
Sbjct: 368 GLSVSRV 374
>pdb|3OFN|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 510
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 105/419 (25%), Positives = 178/419 (42%), Gaps = 37/419 (8%)
Query: 138 IAMDGTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHRE 196
I + G++ LV+ G+ V TG+ + VPVG LGR+++ +G PID KG + +
Sbjct: 75 IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 134
Query: 197 APAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 256
AP + + + + + TG+K VD L P RG + + G GKT + ++ I N + + G
Sbjct: 135 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 194
Query: 257 -------FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARA 309
+ V+ VG++ R + V L A +V +E +
Sbjct: 195 SDESKKLYCVYVAVGQK--------RSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQY 246
Query: 310 RVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 369
T ++ E FRD G+ L+ D++ + A ++S LL R P Y +
Sbjct: 247 LAPFTAASIGEWFRD-NGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHS 305
Query: 370 GLQERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYP 425
L ER + GS+T++ I D++ P + D L ++ GI P
Sbjct: 306 RLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRP 365
Query: 426 AVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVAR 485
A++ S SR+ S + + A ++ L Y+ + A G D L K T+ R
Sbjct: 366 AINVGLSVSRVGSAAQV-KALKQVAGSLKLFLAQYREVA-AFAQFGSD-LDASTKQTLVR 422
Query: 486 ARKIQRFLSQ----PFHVAE----VFTGAPGKY--VELK---ESIASFQGVLDGKYDDL 531
++ + L Q P E ++ G G +EL E +SF L +++L
Sbjct: 423 GERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNEL 481
>pdb|2HLD|A Chain A, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|B Chain B, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|C Chain C, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|J Chain J, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|K Chain K, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|L Chain L, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|S Chain S, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|T Chain T, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|U Chain U, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|A Chain A, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|B Chain B, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|C Chain C, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|J Chain J, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|K Chain K, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|L Chain L, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|S Chain S, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|T Chain T, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|U Chain U, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|A Chain A, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|B Chain B, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|C Chain C, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3OE7|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEH|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3ZRY|A Chain A, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|B Chain B, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|C Chain C, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|A Chain A, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|B Chain B, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|C Chain C, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|K Chain K, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|L Chain L, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|M Chain M, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 510
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 105/419 (25%), Positives = 178/419 (42%), Gaps = 37/419 (8%)
Query: 138 IAMDGTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHRE 196
I + G++ LV+ G+ V TG+ + VPVG LGR+++ +G PID KG + +
Sbjct: 75 IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 134
Query: 197 APAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 256
AP + + + + + TG+K VD L P RG + + G GKT + ++ I N + + G
Sbjct: 135 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 194
Query: 257 -------FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARA 309
+ V+ VG++ R + V L A +V +E +
Sbjct: 195 SDESKKLYCVYVAVGQK--------RSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQY 246
Query: 310 RVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 369
T ++ E FRD G+ L+ D++ + A ++S LL R P Y +
Sbjct: 247 LAPFTAASIGEWFRD-NGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHS 305
Query: 370 GLQERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYP 425
L ER + GS+T++ I D++ P + D L ++ GI P
Sbjct: 306 RLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRP 365
Query: 426 AVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVAR 485
A++ S SR+ S + + A ++ L Y+ + A G D L K T+ R
Sbjct: 366 AINVGLSVSRVGSAAQV-KALKQVAGSLKLFLAQYREVA-AFAQFGSD-LDASTKQTLVR 422
Query: 486 ARKIQRFLSQ----PFHVAE----VFTGAPGKY--VELK---ESIASFQGVLDGKYDDL 531
++ + L Q P E ++ G G +EL E +SF L +++L
Sbjct: 423 GERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNEL 481
>pdb|2XOK|A Chain A, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|B Chain B, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|C Chain C, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 545
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 105/419 (25%), Positives = 178/419 (42%), Gaps = 37/419 (8%)
Query: 138 IAMDGTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHRE 196
I + G++ LV+ G+ V TG+ + VPVG LGR+++ +G PID KG + +
Sbjct: 110 IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 169
Query: 197 APAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 256
AP + + + + + TG+K VD L P RG + + G GKT + ++ I N + + G
Sbjct: 170 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 229
Query: 257 -------FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARA 309
+ V+ VG++ R + V L A +V +E +
Sbjct: 230 SDESKKLYCVYVAVGQK--------RSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQY 281
Query: 310 RVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 369
T ++ E FRD G+ L+ D++ + A ++S LL R P Y +
Sbjct: 282 LAPFTAASIGEWFRD-NGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHS 340
Query: 370 GLQERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYP 425
L ER + GS+T++ I D++ P + D L ++ GI P
Sbjct: 341 RLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRP 400
Query: 426 AVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVAR 485
A++ S SR+ S + + A ++ L Y+ + A G D L K T+ R
Sbjct: 401 AINVGLSVSRVGSAAQV-KALKQVAGSLKLFLAQYREVA-AFAQFGSD-LDASTKQTLVR 457
Query: 486 ARKIQRFLSQ----PFHVAE----VFTGAPGKY--VELK---ESIASFQGVLDGKYDDL 531
++ + L Q P E ++ G G +EL E +SF L +++L
Sbjct: 458 GERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNEL 516
>pdb|2F43|A Chain A, Rat Liver F1-atpase
Length = 510
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 140/307 (45%), Gaps = 21/307 (6%)
Query: 142 GTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF 200
G + L++ G V TG+ + VPVG LGR+++ +G ID KG + ++ + +AP
Sbjct: 77 GNDKLIKEGDIVKRTGAIVDVPVGDELLGRVVDALGNAIDGKGPVGSKIRRRVGLKAPGI 136
Query: 201 VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG---- 256
+ + + ++ + TGIK VD L P RG + + G GKT + ++ I N + + G
Sbjct: 137 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 196
Query: 257 ---FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313
+ ++ +G++ R + V +L D A +V ++ +
Sbjct: 197 KKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPY 248
Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQE 373
+G ++ E+FRD G+ L+ D++ + A ++S LL R P Y + L E
Sbjct: 249 SGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 307
Query: 374 RITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDP 429
R GS+T++ I A D++ P + D L ++ GI PA++
Sbjct: 308 RAAKMNDSFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 367
Query: 430 LDSTSRM 436
S SR+
Sbjct: 368 GLSVSRV 374
>pdb|1MAB|A Chain A, Rat Liver F1-Atpase
Length = 510
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 140/307 (45%), Gaps = 21/307 (6%)
Query: 142 GTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF 200
G + L++ G V TG+ + VPVG LGR+++ +G ID KG + ++ + +AP
Sbjct: 77 GNDKLIKEGDIVKRTGAIVDVPVGDELLGRVVDALGNAIDGKGPVGSKIRRRVGLKAPGI 136
Query: 201 VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG---- 256
+ + + ++ + TGIK VD L P RG + + G GKT + ++ I N + + G
Sbjct: 137 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 196
Query: 257 ---FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313
+ ++ +G++ R + V +L D A +V ++ +
Sbjct: 197 KKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPY 248
Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQE 373
+G ++ E+FRD G+ L+ D++ + A ++S LL R P Y + L E
Sbjct: 249 SGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 307
Query: 374 RITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDP 429
R GS+T++ I A D++ P + D L ++ GI PA++
Sbjct: 308 RAAKMNDSFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 367
Query: 430 LDSTSRM 436
S SR+
Sbjct: 368 GLSVSRV 374
>pdb|3OEE|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
Length = 510
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 105/419 (25%), Positives = 178/419 (42%), Gaps = 37/419 (8%)
Query: 138 IAMDGTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHRE 196
I + G++ LV+ G+ V TG+ + VPVG LGR+++ +G PID KG + +
Sbjct: 75 IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 134
Query: 197 APAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 256
AP + + + + + TG+K VD L P RG + + G GKT + ++ I N + + G
Sbjct: 135 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 194
Query: 257 -------FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARA 309
+ V+ VG++ R + V L A +V +E +
Sbjct: 195 SDESKKLYCVYVAVGQK--------RSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQY 246
Query: 310 RVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 369
T ++ E FRD G+ L+ D++ + A ++S LL R P Y +
Sbjct: 247 LAPFTAASIGEWFRD-NGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHS 305
Query: 370 GLQERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYP 425
L ER + GS+T++ I D++ P + D L ++ GI P
Sbjct: 306 RLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRP 365
Query: 426 AVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVAR 485
A++ S SR+ S + + A ++ L Y+ + A G D L K T+ R
Sbjct: 366 AINVGLSVSRVGSAAQV-KALKQVAGSLKLFLAQYREVA-ASAQFGSD-LDASTKQTLVR 422
Query: 486 ARKIQRFLSQ----PFHVAE----VFTGAPGKY--VELK---ESIASFQGVLDGKYDDL 531
++ + L Q P E ++ G G +EL E +SF L +++L
Sbjct: 423 GERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNEL 481
>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|A Chain A, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 507
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 104/429 (24%), Positives = 179/429 (41%), Gaps = 58/429 (13%)
Query: 100 VRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPI 159
V F+EG I AL + ++V +VL MG+G++ + G V TG
Sbjct: 54 VEFEEG--TIGIALNLESNNVGVVL-----MGDGLM----------IQEGSSVKATGRIA 96
Query: 160 TVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDL 219
+PV LGR++N + +PID +G++ I AP + + + + L TG+ +D
Sbjct: 97 QIPVSEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDA 156
Query: 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIE 279
+ P RG + + G GKT + + I N + V+ +G++ + E
Sbjct: 157 MIPVGRGQRELIIGDRQTGKTAVATDTILN-QQGQNVICVYVAIGQKASSVAQVVTNFQE 215
Query: 280 SGVIKLG---DKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDN 336
G ++ + ADS L Y TG +AE+F E ++++ D+
Sbjct: 216 RGAMEYTIVVAETADSPATLQY-----------LAPYTGAALAEYFMYRERHTLIIY-DD 263
Query: 337 IFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTK----KGSITSVQAIYVP 392
+ + QA ++S LL R P Y + L ER +GS+T++ +
Sbjct: 264 LSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSLLGEGSMTALPIVETQ 323
Query: 393 ADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARG 452
A D++ P + D LS + GI PA++ S SR+ S + +
Sbjct: 324 AGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQI--------KA 375
Query: 453 VQKVLQNYK-NLQDIIAILGMDELSED-DKLT---VARARKIQRFLSQPF--------HV 499
++KV K L + + + D DK T +AR ++++ L QP V
Sbjct: 376 MKKVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQPQSAPLTVEEQV 435
Query: 500 AEVFTGAPG 508
++TG G
Sbjct: 436 MTIYTGTNG 444
>pdb|3L0O|A Chain A, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
pdb|3L0O|B Chain B, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
Length = 427
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 95/232 (40%), Gaps = 28/232 (12%)
Query: 211 VTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH-GGFSVFAGVGERTRE 269
+ +++DL AP +G + + GKT ++ E+ N +A+ H + + ER E
Sbjct: 160 IYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEE 219
Query: 270 GNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQD 329
D+ + + ++ + PP + +V L +A+ + D
Sbjct: 220 VTDI---------------RESTNAIVIAAPFDMPPDKQVKVAELTLEMAKRLVEF-NYD 263
Query: 330 VLLFIDNIFRFTQANSEV-----SALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSIT 384
V++ +D++ R + + V L G + A Y+P G + T + GS+T
Sbjct: 264 VVILLDSLTRLARVYNIVVPPSGKLLTGGVDPAALYKPKRF--FGAAR---NTREGGSLT 318
Query: 385 SVQAIYVPADDLTDPAPATTFAHL-DATTVLSRQISELGIYPAVDPLDSTSR 435
+ V D F + VLSRQ++ I+PA++ L S +R
Sbjct: 319 IIATALVETGSKMDEVIFEEFKGTGNMELVLSRQLANKRIFPAINLLLSGTR 370
>pdb|1PVO|A Chain A, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|B Chain B, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|C Chain C, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|D Chain D, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|E Chain E, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|F Chain F, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1XPR|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPU|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPO|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
Length = 419
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 59/288 (20%), Positives = 116/288 (40%), Gaps = 36/288 (12%)
Query: 177 EPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAG 236
+P + + + E+ P+H + +E+ +T +V+DL +P RG + +
Sbjct: 123 KPENARNKILFENLTPLHANSRLRMERGNGSTEDLTA-RVLDLASPIGRGQRGLIVAPPK 181
Query: 237 VGKTVLIMELINNVAKAHGGFSVFA-GVGERTREGNDLYREMIESGVIKLGDKQADSKCA 295
GKT+L+ + ++A H + + ER E ++ R + K
Sbjct: 182 AGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV---------------KGE 226
Query: 296 LVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEV-----SAL 350
+V +EP +V + A+ + + +DV++ +D+I R +A + V L
Sbjct: 227 VVASTFDEPASRHVQVAEMVIEKAKRLVEHK-KDVIILLDSITRLARAYNTVVPASGKVL 285
Query: 351 LGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDA 410
G + + ++P G + + GS+T + + D F
Sbjct: 286 TGGVDANALHRPKRF--FGAAR---NVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGN 340
Query: 411 TTV-LSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVL 457
+ LSR+I+E ++PA+D S +R EE T +QK+
Sbjct: 341 MELHLSRKIAEKRVFPAIDYNRSGTR-------KEELLTTQEELQKMW 381
>pdb|2HT1|A Chain A, The Closed Ring Structure Of The Rho Transcription
Termination Factor In Complex With Nucleic Acid In The
Motor Domains
pdb|2HT1|B Chain B, The Closed Ring Structure Of The Rho Transcription
Termination Factor In Complex With Nucleic Acid In The
Motor Domains
Length = 433
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 59/288 (20%), Positives = 116/288 (40%), Gaps = 36/288 (12%)
Query: 177 EPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAG 236
+P + + + E+ P+H + +E+ +T +V+DL +P RG + +
Sbjct: 145 KPENARNKILFENLTPLHANSRLRMERGNGSTEDLTA-RVLDLASPIGRGQRGLIVAPPK 203
Query: 237 VGKTVLIMELINNVAKAHGGFSVFA-GVGERTREGNDLYREMIESGVIKLGDKQADSKCA 295
GKT+L+ + ++A H + + ER E ++ R + K
Sbjct: 204 AGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV---------------KGE 248
Query: 296 LVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEV-----SAL 350
+V +EP +V + A+ + + +DV++ +D+I R +A + V L
Sbjct: 249 VVASTFDEPASRHVQVAEMVIEKAKRLVEHK-KDVIILLDSITRLARAYNTVVPASGKVL 307
Query: 351 LGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDA 410
G + + ++P G + + GS+T + + D F
Sbjct: 308 TGGVDANALHRPKRF--FGAAR---NVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGN 362
Query: 411 TTV-LSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVL 457
+ LSR+I+E ++PA+D S +R EE T +QK+
Sbjct: 363 MELHLSRKIAEKRVFPAIDYNRSGTR-------KEELLTTQEELQKMW 403
>pdb|3ICE|A Chain A, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|B Chain B, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|C Chain C, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|D Chain D, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|E Chain E, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|F Chain F, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
Length = 422
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 54/266 (20%), Positives = 106/266 (39%), Gaps = 29/266 (10%)
Query: 177 EPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAG 236
+P + + + E+ P+H + E+ +T +V+DL +P RG + +
Sbjct: 126 KPENARNKILFENLTPLHANSRLRXERGNGSTEDLTA-RVLDLASPIGRGQRGLIVAPPK 184
Query: 237 VGKTVLIMELINNVAKAHGGFSVFA-GVGERTREGNDLYREMIESGVIKLGDKQADSKCA 295
GKT L+ + ++A H + + ER E + R + K
Sbjct: 185 AGKTXLLQNIAQSIAYNHPDCVLXVLLIDERPEEVTEXQRLV---------------KGE 229
Query: 296 LVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEV-----SAL 350
+V +EP +V + A+ + + +DV++ +D+I R +A + V L
Sbjct: 230 VVASTFDEPASRHVQVAEXVIEKAKRLVEHK-KDVIILLDSITRLARAYNTVVPASGKVL 288
Query: 351 LGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDA 410
G + + ++P G + + GS+T + + D F
Sbjct: 289 TGGVDANALHRPKRF--FGAAR---NVEEGGSLTIIATALIDTGSKXDEVIYEEFKGTGN 343
Query: 411 TTV-LSRQISELGIYPAVDPLDSTSR 435
+ LSR+I+E ++PA+D S +R
Sbjct: 344 XELHLSRKIAEKRVFPAIDYNRSGTR 369
>pdb|1PV4|A Chain A, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|B Chain B, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|C Chain C, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|D Chain D, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|E Chain E, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|F Chain F, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
Length = 419
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 54/266 (20%), Positives = 106/266 (39%), Gaps = 29/266 (10%)
Query: 177 EPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAG 236
+P + + + E+ P+H + E+ +T +V+DL +P RG + +
Sbjct: 123 KPENARNKILFENLTPLHANSRLRXERGNGSTEDLTA-RVLDLASPIGRGQRGLIVAPPK 181
Query: 237 VGKTVLIMELINNVAKAHGGFSVFA-GVGERTREGNDLYREMIESGVIKLGDKQADSKCA 295
GKT L+ + ++A H + + ER E + R + K
Sbjct: 182 AGKTXLLQNIAQSIAYNHPDCVLXVLLIDERPEEVTEXQRLV---------------KGE 226
Query: 296 LVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEV-----SAL 350
+V +EP +V + A+ + + +DV++ +D+I R +A + V L
Sbjct: 227 VVASTFDEPASRHVQVAEXVIEKAKRLVEHK-KDVIILLDSITRLARAYNTVVPASGKVL 285
Query: 351 LGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDA 410
G + + ++P G + + GS+T + + D F
Sbjct: 286 TGGVDANALHRPKRF--FGAAR---NVEEGGSLTIIATALIDTGSKXDEVIYEEFKGTGN 340
Query: 411 TTV-LSRQISELGIYPAVDPLDSTSR 435
+ LSR+I+E ++PA+D S +R
Sbjct: 341 XELHLSRKIAEKRVFPAIDYNRSGTR 366
>pdb|3I9W|A Chain A, Crystal Structure Of The E. Coli Histidine Kinase Sensor
Tors Sensor Domain
Length = 290
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 22/100 (22%)
Query: 278 IESGVIKLGDKQADSKCALVYGQMN-------------EPPGARARVGLTGLTVAEHF-- 322
++ V+ LG +Q + Q+N E PG RA+V T TV+++
Sbjct: 183 VQQMVMNLGLEQIQKNAPTLEKQLNNAVKILQRRQIRIEDPGVRAQVATTLTTVSQYSDL 242
Query: 323 -----RDAEGQDVL--LFIDNIFRFTQANSEVSALLGRIP 355
+D+E + L L +NI +F Q +SEVS L+ I
Sbjct: 243 LALYQQDSEISNHLQTLAQNNIAQFAQFSSEVSQLVDTIE 282
>pdb|1RR7|A Chain A, Crystal Structure Of The Middle Operon Regulator Protein
Of Bacteriophage Mu
Length = 129
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 31/75 (41%)
Query: 118 HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGE 177
HS+ +V+ + +H+G G V + L+R R+ N + V G N + +
Sbjct: 52 HSLEIVVAICKHLGGGQVYIPRGQALDSLIRDLRIWNDFNGRNVSELTTRYGVTFNTVYK 111
Query: 178 PIDEKGDLKTEHYLP 192
I LK Y P
Sbjct: 112 AIRRMRRLKYRQYQP 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,687,048
Number of Sequences: 62578
Number of extensions: 619885
Number of successful extensions: 2000
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1777
Number of HSP's gapped (non-prelim): 112
length of query: 558
length of database: 14,973,337
effective HSP length: 104
effective length of query: 454
effective length of database: 8,465,225
effective search space: 3843212150
effective search space used: 3843212150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)