Query 008638
Match_columns 558
No_of_seqs 320 out of 2351
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 14:41:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008638.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008638hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0055 AtpD F0F1-type ATP syn 100.0 2E-148 5E-153 1139.5 36.6 461 86-554 2-467 (468)
2 KOG1350 F0F1-type ATP synthase 100.0 2E-146 3E-151 1104.8 29.4 474 82-557 47-520 (521)
3 TIGR03305 alt_F1F0_F1_bet alte 100.0 9E-127 2E-131 1022.4 44.9 448 88-544 1-448 (449)
4 CHL00060 atpB ATP synthase CF1 100.0 5E-124 1E-128 1006.2 49.8 471 84-556 13-490 (494)
5 TIGR01039 atpD ATP synthase, F 100.0 6E-123 1E-127 992.3 47.1 456 87-550 2-459 (461)
6 PRK09280 F0F1 ATP synthase sub 100.0 8E-123 2E-127 994.0 47.7 459 86-552 2-462 (463)
7 PRK12597 F0F1 ATP synthase sub 100.0 4E-122 8E-127 991.0 47.8 457 86-550 2-459 (461)
8 TIGR03324 alt_F1F0_F1_al alter 100.0 1E-108 3E-113 888.3 42.8 423 85-536 26-453 (497)
9 PRK13343 F0F1 ATP synthase sub 100.0 3E-107 6E-112 880.9 42.1 422 85-535 26-452 (502)
10 PTZ00185 ATPase alpha subunit; 100.0 9E-107 2E-111 869.0 44.9 436 72-534 25-481 (574)
11 CHL00059 atpA ATP synthase CF1 100.0 3E-106 7E-111 866.7 42.0 422 85-535 5-431 (485)
12 PRK09281 F0F1 ATP synthase sub 100.0 6E-106 1E-110 873.8 43.8 423 85-536 26-453 (502)
13 TIGR00962 atpA proton transloc 100.0 1E-105 3E-110 870.7 44.1 422 85-535 25-451 (501)
14 COG1157 FliI Flagellar biosynt 100.0 6E-106 1E-110 839.9 37.8 417 82-525 20-440 (441)
15 TIGR01041 ATP_syn_B_arch ATP s 100.0 6E-105 1E-109 857.9 43.7 424 86-536 1-439 (458)
16 PRK04196 V-type ATP synthase s 100.0 8E-105 2E-109 858.9 43.9 427 85-539 2-444 (460)
17 PRK02118 V-type ATP synthase s 100.0 1E-104 2E-109 847.5 42.8 412 85-537 3-419 (436)
18 PRK04192 V-type ATP synthase s 100.0 1E-103 3E-108 860.0 42.3 424 85-524 2-526 (586)
19 TIGR01043 ATP_syn_A_arch ATP s 100.0 5E-103 1E-107 854.3 41.9 421 87-524 1-523 (578)
20 PRK06936 type III secretion sy 100.0 1E-102 2E-107 834.7 42.2 415 84-525 21-439 (439)
21 PRK07165 F0F1 ATP synthase sub 100.0 2E-102 3E-107 840.9 41.6 416 89-533 4-426 (507)
22 TIGR01042 V-ATPase_V1_A V-type 100.0 2E-102 4E-107 846.1 39.5 423 86-524 1-528 (591)
23 PRK08927 fliI flagellum-specif 100.0 1E-101 2E-106 827.2 42.8 419 84-526 15-438 (442)
24 PRK08972 fliI flagellum-specif 100.0 1E-101 2E-106 825.1 41.8 414 85-525 24-441 (444)
25 TIGR01040 V-ATPase_V1_B V-type 100.0 2E-100 3E-105 817.3 42.5 425 86-539 1-451 (466)
26 TIGR03497 FliI_clade2 flagella 100.0 1.4E-99 3E-104 809.5 40.8 410 88-524 1-413 (413)
27 PRK05688 fliI flagellum-specif 100.0 3.9E-99 8E-104 809.4 44.2 415 84-525 25-447 (451)
28 TIGR03496 FliI_clade1 flagella 100.0 4E-99 9E-104 805.7 40.6 405 88-519 1-410 (411)
29 TIGR03498 FliI_clade3 flagella 100.0 8.1E-99 2E-103 803.8 40.7 410 88-524 1-418 (418)
30 PRK09099 type III secretion sy 100.0 1.3E-98 3E-103 805.7 41.9 414 84-524 22-439 (441)
31 PRK06820 type III secretion sy 100.0 5.4E-98 1E-102 800.0 42.2 411 85-524 28-439 (440)
32 PRK07594 type III secretion sy 100.0 3.4E-97 7E-102 792.5 40.5 412 85-525 20-432 (433)
33 PRK08472 fliI flagellum-specif 100.0 6.3E-97 1E-101 790.6 40.6 414 83-524 15-433 (434)
34 PRK07960 fliI flagellum-specif 100.0 7.9E-97 2E-101 789.8 41.0 415 83-524 24-453 (455)
35 PRK05922 type III secretion sy 100.0 1.1E-96 2E-101 788.0 41.6 413 85-526 18-433 (434)
36 PRK08149 ATP synthase SpaL; Va 100.0 1.6E-96 4E-101 786.2 40.1 412 86-524 6-427 (428)
37 COG0056 AtpA F0F1-type ATP syn 100.0 1.3E-96 3E-101 770.8 32.9 423 85-535 26-452 (504)
38 TIGR01026 fliI_yscN ATPase Fli 100.0 7.3E-94 1.6E-98 771.0 42.6 415 84-525 21-440 (440)
39 TIGR02546 III_secr_ATP type II 100.0 7.6E-94 1.7E-98 768.6 40.4 413 86-525 5-422 (422)
40 PRK06002 fliI flagellum-specif 100.0 1.9E-93 4E-98 764.6 42.5 414 85-528 25-445 (450)
41 PRK07196 fliI flagellum-specif 100.0 1.4E-93 3E-98 764.9 40.3 415 84-525 15-433 (434)
42 PRK07721 fliI flagellum-specif 100.0 1.4E-90 3E-95 745.2 38.7 416 83-525 15-435 (438)
43 PRK06793 fliI flagellum-specif 100.0 6.1E-90 1.3E-94 736.4 41.8 410 84-523 19-431 (432)
44 PRK06315 type III secretion sy 100.0 3.7E-90 8E-95 739.9 40.1 415 84-524 21-441 (442)
45 cd01135 V_A-ATPase_B V/A-type 100.0 1.1E-90 2.4E-95 702.9 25.2 270 158-436 1-276 (276)
46 cd01133 F1-ATPase_beta F1 ATP 100.0 5.3E-90 1.2E-94 698.9 26.9 274 158-439 1-274 (274)
47 cd01136 ATPase_flagellum-secre 100.0 3.1E-87 6.6E-92 694.7 30.3 325 158-495 1-326 (326)
48 cd01132 F1_ATPase_alpha F1 ATP 100.0 1.7E-87 3.6E-92 679.7 25.6 269 159-437 2-274 (274)
49 PRK14698 V-type ATP synthase s 100.0 1.8E-85 3.9E-90 757.9 38.8 262 255-524 682-957 (1017)
50 cd01134 V_A-ATPase_A V/A-type 100.0 5.7E-79 1.2E-83 632.6 22.9 247 184-436 116-369 (369)
51 COG1155 NtpA Archaeal/vacuolar 100.0 1.3E-76 2.8E-81 628.8 23.5 421 87-519 2-526 (588)
52 KOG1352 Vacuolar H+-ATPase V1 100.0 3.3E-76 7.1E-81 606.6 15.5 409 82-499 16-528 (618)
53 PRK12608 transcription termina 100.0 1.9E-70 4.2E-75 574.9 26.9 333 111-468 21-360 (380)
54 PF00006 ATP-synt_ab: ATP synt 100.0 1.1E-69 2.3E-74 535.2 15.7 211 212-434 1-215 (215)
55 COG1156 NtpB Archaeal/vacuolar 100.0 6.6E-68 1.4E-72 549.4 28.4 438 85-549 5-455 (463)
56 PRK12678 transcription termina 100.0 8.3E-66 1.8E-70 557.2 26.9 332 104-466 291-641 (672)
57 PRK09376 rho transcription ter 100.0 1.7E-64 3.7E-69 531.2 30.0 335 111-468 53-396 (416)
58 KOG1351 Vacuolar H+-ATPase V1 100.0 3.8E-59 8.3E-64 467.4 24.6 401 85-499 22-447 (489)
59 TIGR00767 rho transcription te 100.0 4.2E-58 9E-63 484.8 25.6 331 112-466 54-393 (415)
60 cd01128 rho_factor Transcripti 100.0 5E-53 1.1E-57 425.3 22.3 238 214-469 4-244 (249)
61 COG1158 Rho Transcription term 100.0 1.7E-47 3.6E-52 389.7 20.4 327 113-466 58-398 (422)
62 KOG1353 F0F1-type ATP synthase 100.0 3E-45 6.5E-50 360.9 11.1 310 85-518 19-335 (340)
63 PF00306 ATP-synt_ab_C: ATP sy 99.4 6.3E-13 1.4E-17 118.9 8.4 96 447-545 1-97 (113)
64 cd01120 RecA-like_NTPases RecA 99.0 6.6E-09 1.4E-13 94.6 15.3 160 229-416 2-165 (165)
65 PF02874 ATP-synt_ab_N: ATP sy 98.5 2.5E-07 5.5E-12 75.2 6.3 66 90-156 1-69 (69)
66 PF11421 Synthase_beta: ATP sy 98.5 6.8E-08 1.5E-12 72.9 2.4 47 1-47 1-49 (49)
67 PF06745 KaiC: KaiC; InterPro 98.2 7.2E-06 1.6E-10 81.0 9.6 182 210-417 1-186 (226)
68 COG0467 RAD55 RecA-superfamily 98.1 1.7E-05 3.7E-10 80.3 11.6 184 208-422 3-199 (260)
69 smart00382 AAA ATPases associa 98.1 9.9E-06 2.1E-10 70.3 7.5 145 225-415 1-145 (148)
70 cd01394 radB RadB. The archaea 97.9 6.7E-05 1.4E-09 73.6 9.7 51 210-261 1-53 (218)
71 PRK06067 flagellar accessory p 97.8 0.00015 3.3E-09 72.2 11.3 71 207-281 4-76 (234)
72 PRK09302 circadian clock prote 97.8 0.00012 2.5E-09 81.5 11.5 182 206-418 251-436 (509)
73 cd01123 Rad51_DMC1_radA Rad51_ 97.6 0.00016 3.4E-09 71.5 8.2 122 210-342 1-129 (235)
74 TIGR03878 thermo_KaiC_2 KaiC d 97.5 0.00064 1.4E-08 69.3 10.8 57 210-267 4-76 (259)
75 TIGR02012 tigrfam_recA protein 97.4 0.00029 6.3E-09 74.3 7.4 111 208-342 34-147 (321)
76 cd01393 recA_like RecA is a b 97.4 0.00058 1.3E-08 67.1 8.9 44 210-253 1-46 (226)
77 PRK09354 recA recombinase A; P 97.4 0.00039 8.5E-09 74.1 7.6 112 207-342 38-152 (349)
78 TIGR02236 recomb_radA DNA repa 97.4 0.00046 9.9E-09 71.8 8.0 123 207-342 74-206 (310)
79 cd00983 recA RecA is a bacter 97.3 0.00039 8.4E-09 73.5 6.5 112 207-342 33-147 (325)
80 PRK09361 radB DNA repair and r 97.3 0.0019 4.2E-08 63.7 11.1 56 207-263 2-59 (225)
81 TIGR02655 circ_KaiC circadian 97.3 0.0017 3.6E-08 72.1 11.5 193 206-432 241-440 (484)
82 TIGR03877 thermo_KaiC_1 KaiC d 97.3 0.00042 9E-09 69.5 5.9 61 210-271 3-65 (237)
83 PLN03187 meiotic recombination 97.2 0.0015 3.2E-08 69.7 9.9 123 207-343 105-236 (344)
84 cd01122 GP4d_helicase GP4d_hel 97.2 0.0036 7.7E-08 63.4 12.3 66 208-273 11-77 (271)
85 PRK04328 hypothetical protein; 97.2 0.00056 1.2E-08 69.3 6.0 63 209-272 4-68 (249)
86 TIGR02655 circ_KaiC circadian 97.1 0.00055 1.2E-08 75.9 5.8 70 209-281 2-73 (484)
87 cd01124 KaiC KaiC is a circadi 97.1 0.0048 1E-07 58.4 11.1 43 229-272 2-44 (187)
88 COG1155 NtpA Archaeal/vacuolar 97.1 0.0014 3E-08 72.3 7.8 226 297-525 287-526 (588)
89 TIGR02238 recomb_DMC1 meiotic 97.0 0.0031 6.7E-08 66.4 9.8 123 206-342 74-205 (313)
90 TIGR03881 KaiC_arch_4 KaiC dom 97.0 0.001 2.2E-08 65.7 5.9 60 210-270 2-63 (229)
91 PTZ00035 Rad51 protein; Provis 97.0 0.0024 5.2E-08 67.9 8.9 46 205-250 95-142 (337)
92 PRK09302 circadian clock prote 96.9 0.0013 2.9E-08 73.1 5.8 65 208-272 11-77 (509)
93 TIGR02237 recomb_radB DNA repa 96.8 0.0088 1.9E-07 58.2 10.5 42 223-265 9-50 (209)
94 TIGR03880 KaiC_arch_3 KaiC dom 96.8 0.0081 1.7E-07 59.3 10.2 65 213-281 1-67 (224)
95 PRK09519 recA DNA recombinatio 96.8 0.0033 7.2E-08 73.3 8.5 110 208-341 39-151 (790)
96 PRK04301 radA DNA repair and r 96.8 0.0042 9.1E-08 65.1 8.3 58 208-265 82-146 (317)
97 TIGR00416 sms DNA repair prote 96.8 0.0029 6.4E-08 69.8 7.4 58 208-267 74-133 (454)
98 cd01121 Sms Sms (bacterial rad 96.8 0.006 1.3E-07 65.7 9.5 58 208-267 62-121 (372)
99 PLN03186 DNA repair protein RA 96.7 0.0048 1E-07 65.8 8.5 123 207-343 102-233 (342)
100 PF05729 NACHT: NACHT domain 96.7 0.0048 1E-07 56.5 6.9 42 228-269 2-48 (166)
101 PF05496 RuvB_N: Holliday junc 96.6 0.0043 9.3E-08 62.6 6.5 21 328-348 101-121 (233)
102 PRK11823 DNA repair protein Ra 96.6 0.0084 1.8E-07 66.0 9.1 56 208-265 60-117 (446)
103 TIGR02239 recomb_RAD51 DNA rep 96.4 0.011 2.3E-07 62.4 8.4 44 207-250 75-120 (316)
104 PRK08533 flagellar accessory p 96.3 0.011 2.3E-07 59.4 7.7 68 210-281 6-75 (230)
105 PRK05973 replicative DNA helic 96.3 0.022 4.8E-07 57.8 9.7 99 222-340 60-159 (237)
106 cd00009 AAA The AAA+ (ATPases 96.3 0.079 1.7E-06 46.3 12.0 27 225-251 18-44 (151)
107 PF00154 RecA: recA bacterial 96.1 0.015 3.3E-07 61.5 7.7 109 207-340 31-143 (322)
108 PF13173 AAA_14: AAA domain 96.1 0.022 4.7E-07 51.5 7.4 24 227-250 3-26 (128)
109 PF00931 NB-ARC: NB-ARC domain 95.9 0.0071 1.5E-07 61.2 3.9 55 224-279 17-72 (287)
110 PF13401 AAA_22: AAA domain; P 95.7 0.035 7.6E-07 49.3 7.1 94 225-341 3-100 (131)
111 COG2256 MGS1 ATPase related to 95.6 0.03 6.5E-07 60.6 7.3 32 316-348 93-124 (436)
112 TIGR02928 orc1/cdc6 family rep 95.4 0.07 1.5E-06 56.2 9.2 100 224-341 38-142 (365)
113 PF08423 Rad51: Rad51; InterP 95.4 0.032 6.8E-07 57.1 6.3 127 206-344 16-149 (256)
114 PRK00411 cdc6 cell division co 95.3 0.1 2.2E-06 55.7 10.0 98 224-341 53-151 (394)
115 PF04665 Pox_A32: Poxvirus A32 95.3 0.062 1.3E-06 54.8 8.0 38 228-267 15-52 (241)
116 PRK14722 flhF flagellar biosyn 95.2 0.1 2.2E-06 56.4 9.9 46 209-254 119-165 (374)
117 KOG2028 ATPase related to the 95.2 0.061 1.3E-06 57.8 7.7 77 229-347 165-241 (554)
118 TIGR00665 DnaB replicative DNA 95.1 0.027 5.9E-07 61.3 5.2 62 208-270 176-239 (434)
119 cd00984 DnaB_C DnaB helicase C 95.1 0.034 7.5E-07 55.1 5.4 49 223-271 10-58 (242)
120 PF03796 DnaB_C: DnaB-like hel 95.0 0.025 5.4E-07 57.3 4.1 58 210-268 2-60 (259)
121 COG1124 DppF ABC-type dipeptid 94.9 0.018 3.9E-07 58.6 2.8 27 221-247 28-54 (252)
122 PRK13342 recombination factor 94.9 0.078 1.7E-06 57.7 8.0 24 226-249 36-59 (413)
123 COG0468 RecA RecA/RadA recombi 94.8 0.11 2.3E-06 54.2 8.2 115 207-344 39-157 (279)
124 cd01125 repA Hexameric Replica 94.5 0.24 5.2E-06 49.5 9.8 44 226-269 1-54 (239)
125 PRK10416 signal recognition pa 94.4 0.37 8E-06 51.0 11.4 29 224-252 112-140 (318)
126 PF13207 AAA_17: AAA domain; P 94.4 0.043 9.3E-07 48.3 3.8 22 228-249 1-22 (121)
127 PF01637 Arch_ATPase: Archaeal 94.4 0.031 6.8E-07 53.8 3.1 27 224-250 18-44 (234)
128 PF13521 AAA_28: AAA domain; P 94.4 0.041 8.9E-07 51.5 3.8 34 228-270 1-34 (163)
129 PF00448 SRP54: SRP54-type pro 94.4 0.49 1.1E-05 46.5 11.5 45 228-272 3-47 (196)
130 cd03115 SRP The signal recogni 94.4 0.73 1.6E-05 43.4 12.3 43 229-272 3-45 (173)
131 PRK05748 replicative DNA helic 94.3 0.049 1.1E-06 59.8 4.7 58 208-266 184-242 (448)
132 COG1066 Sms Predicted ATP-depe 94.3 0.16 3.4E-06 55.5 8.2 55 210-267 75-131 (456)
133 PF01583 APS_kinase: Adenylyls 94.1 0.16 3.4E-06 48.6 7.1 87 225-340 1-87 (156)
134 cd03222 ABC_RNaseL_inhibitor T 94.1 0.048 1E-06 52.8 3.6 35 215-250 14-48 (177)
135 cd00820 PEPCK_HprK Phosphoenol 94.1 0.04 8.7E-07 49.4 2.8 27 221-247 10-36 (107)
136 PRK09165 replicative DNA helic 93.9 0.06 1.3E-06 60.2 4.4 46 208-253 198-244 (497)
137 COG1126 GlnQ ABC-type polar am 93.9 0.066 1.4E-06 53.9 4.2 39 221-260 23-61 (240)
138 COG0563 Adk Adenylate kinase a 93.8 0.16 3.4E-06 49.3 6.8 22 228-249 2-23 (178)
139 cd00544 CobU Adenosylcobinamid 93.8 0.17 3.7E-06 48.7 6.8 88 229-345 2-90 (169)
140 cd03229 ABC_Class3 This class 93.8 0.048 1E-06 52.0 3.0 27 221-247 21-47 (178)
141 TIGR03600 phage_DnaB phage rep 93.8 0.079 1.7E-06 57.6 5.1 58 208-266 175-233 (421)
142 TIGR01166 cbiO cobalt transpor 93.8 0.049 1.1E-06 52.3 3.0 26 221-246 13-38 (190)
143 PF13481 AAA_25: AAA domain; P 93.7 0.14 3E-06 48.8 6.0 65 210-274 14-89 (193)
144 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.7 0.051 1.1E-06 53.1 3.1 27 221-247 25-51 (218)
145 cd03254 ABCC_Glucan_exporter_l 93.7 0.051 1.1E-06 53.6 3.1 27 221-247 24-50 (229)
146 cd03260 ABC_PstB_phosphate_tra 93.6 0.055 1.2E-06 53.4 3.2 29 221-250 21-49 (227)
147 cd03292 ABC_FtsE_transporter F 93.6 0.055 1.2E-06 52.7 3.1 28 220-247 21-48 (214)
148 PF00005 ABC_tran: ABC transpo 93.6 0.054 1.2E-06 48.7 2.9 26 221-246 6-31 (137)
149 cd03225 ABC_cobalt_CbiO_domain 93.6 0.054 1.2E-06 52.8 3.0 28 220-247 21-48 (211)
150 COG1116 TauB ABC-type nitrate/ 93.6 0.053 1.2E-06 55.3 3.1 32 219-251 22-53 (248)
151 cd03269 ABC_putative_ATPase Th 93.5 0.059 1.3E-06 52.5 3.2 28 220-247 20-47 (210)
152 PRK14974 cell division protein 93.5 0.76 1.7E-05 49.1 11.7 29 224-252 138-166 (336)
153 cd03224 ABC_TM1139_LivF_branch 93.5 0.056 1.2E-06 53.0 3.0 26 221-246 21-46 (222)
154 TIGR02211 LolD_lipo_ex lipopro 93.5 0.06 1.3E-06 52.8 3.1 28 220-247 25-52 (221)
155 COG1125 OpuBA ABC-type proline 93.5 0.09 2E-06 54.2 4.4 41 215-256 15-56 (309)
156 TIGR02315 ABC_phnC phosphonate 93.5 0.058 1.3E-06 53.7 3.1 26 221-246 23-48 (243)
157 TIGR03608 L_ocin_972_ABC putat 93.4 0.06 1.3E-06 52.1 3.0 28 220-247 18-45 (206)
158 PRK13540 cytochrome c biogenes 93.4 0.063 1.4E-06 52.1 3.2 30 220-250 21-50 (200)
159 TIGR00960 3a0501s02 Type II (G 93.4 0.062 1.3E-06 52.6 3.1 28 220-247 23-50 (216)
160 cd03238 ABC_UvrA The excision 93.4 0.061 1.3E-06 52.0 3.0 27 220-246 15-41 (176)
161 cd03256 ABC_PhnC_transporter A 93.3 0.063 1.4E-06 53.3 3.1 27 221-247 22-48 (241)
162 TIGR03410 urea_trans_UrtE urea 93.3 0.063 1.4E-06 53.1 3.0 32 218-250 18-49 (230)
163 cd03296 ABC_CysA_sulfate_impor 93.3 0.065 1.4E-06 53.4 3.1 28 220-247 22-49 (239)
164 cd03265 ABC_DrrA DrrA is the A 93.3 0.065 1.4E-06 52.6 3.1 29 218-246 18-46 (220)
165 cd03258 ABC_MetN_methionine_tr 93.3 0.064 1.4E-06 53.1 3.1 27 221-247 26-52 (233)
166 PRK08181 transposase; Validate 93.3 0.19 4.2E-06 51.9 6.7 46 224-278 104-150 (269)
167 cd03298 ABC_ThiQ_thiamine_tran 93.3 0.074 1.6E-06 51.8 3.4 30 217-246 15-44 (211)
168 cd03250 ABCC_MRP_domain1 Domai 93.2 0.059 1.3E-06 52.4 2.6 28 220-247 25-52 (204)
169 cd03257 ABC_NikE_OppD_transpor 93.2 0.066 1.4E-06 52.6 3.0 28 220-247 25-52 (228)
170 cd03249 ABC_MTABC3_MDL1_MDL2 M 93.2 0.076 1.7E-06 52.7 3.5 28 220-247 23-50 (238)
171 TIGR03015 pepcterm_ATPase puta 93.2 0.51 1.1E-05 47.4 9.4 24 226-249 43-66 (269)
172 cd03261 ABC_Org_Solvent_Resist 93.2 0.07 1.5E-06 53.0 3.1 28 220-247 20-47 (235)
173 PRK13539 cytochrome c biogenes 93.2 0.07 1.5E-06 52.1 3.1 27 220-246 22-48 (207)
174 cd03226 ABC_cobalt_CbiO_domain 93.1 0.072 1.6E-06 51.8 3.1 26 221-246 21-46 (205)
175 COG3842 PotA ABC-type spermidi 93.1 0.091 2E-06 56.4 4.1 42 206-249 11-53 (352)
176 PRK11124 artP arginine transpo 93.1 0.072 1.6E-06 53.1 3.2 26 221-246 23-48 (242)
177 cd03262 ABC_HisP_GlnQ_permease 93.1 0.072 1.6E-06 51.9 3.1 27 221-247 21-47 (213)
178 cd03259 ABC_Carb_Solutes_like 93.1 0.072 1.6E-06 52.0 3.1 27 221-247 21-47 (213)
179 cd03218 ABC_YhbG The ABC trans 93.1 0.071 1.5E-06 52.7 3.1 27 221-247 21-47 (232)
180 TIGR03864 PQQ_ABC_ATP ABC tran 93.1 0.074 1.6E-06 52.9 3.2 27 221-247 22-48 (236)
181 PRK14247 phosphate ABC transpo 93.1 0.072 1.6E-06 53.4 3.1 28 220-247 23-50 (250)
182 TIGR00455 apsK adenylylsulfate 93.1 0.66 1.4E-05 44.3 9.6 27 224-250 16-42 (184)
183 cd03214 ABC_Iron-Siderophores_ 93.1 0.082 1.8E-06 50.5 3.3 36 220-256 19-54 (180)
184 cd03266 ABC_NatA_sodium_export 93.1 0.074 1.6E-06 52.0 3.1 27 221-247 26-52 (218)
185 PF08477 Miro: Miro-like prote 93.0 0.081 1.8E-06 46.1 3.0 22 228-249 1-22 (119)
186 PRK08118 topology modulation p 93.0 0.078 1.7E-06 50.6 3.1 23 227-249 2-24 (167)
187 cd03231 ABC_CcmA_heme_exporter 93.0 0.076 1.6E-06 51.7 3.0 32 218-250 18-49 (201)
188 cd03301 ABC_MalK_N The N-termi 93.0 0.077 1.7E-06 51.7 3.1 27 221-247 21-47 (213)
189 PRK14267 phosphate ABC transpo 93.0 0.074 1.6E-06 53.4 3.0 30 220-250 24-53 (253)
190 TIGR02673 FtsE cell division A 93.0 0.077 1.7E-06 51.8 3.1 29 221-250 23-51 (214)
191 cd03252 ABCC_Hemolysin The ABC 93.0 0.075 1.6E-06 52.8 3.0 28 220-247 22-49 (237)
192 cd03245 ABCC_bacteriocin_expor 92.9 0.078 1.7E-06 52.0 3.1 27 221-247 25-51 (220)
193 cd03247 ABCC_cytochrome_bd The 92.9 0.084 1.8E-06 50.3 3.2 28 220-247 22-49 (178)
194 TIGR00064 ftsY signal recognit 92.9 0.76 1.7E-05 47.5 10.4 31 223-253 69-99 (272)
195 cd03219 ABC_Mj1267_LivG_branch 92.9 0.071 1.5E-06 52.8 2.8 27 221-247 21-47 (236)
196 PHA02542 41 41 helicase; Provi 92.9 0.096 2.1E-06 58.3 4.0 59 208-268 170-230 (473)
197 cd03235 ABC_Metallic_Cations A 92.9 0.073 1.6E-06 51.9 2.8 26 221-246 20-45 (213)
198 cd03251 ABCC_MsbA MsbA is an e 92.9 0.082 1.8E-06 52.3 3.2 28 220-247 22-49 (234)
199 TIGR01978 sufC FeS assembly AT 92.9 0.079 1.7E-06 52.6 3.0 28 220-247 20-47 (243)
200 PRK11701 phnK phosphonate C-P 92.9 0.08 1.7E-06 53.5 3.1 29 219-247 25-53 (258)
201 cd03293 ABC_NrtD_SsuB_transpor 92.9 0.079 1.7E-06 52.1 3.0 27 221-247 25-51 (220)
202 PRK11248 tauB taurine transpor 92.9 0.082 1.8E-06 53.6 3.2 27 221-247 22-48 (255)
203 PRK07261 topology modulation p 92.9 0.084 1.8E-06 50.5 3.1 23 227-249 1-23 (171)
204 PRK13541 cytochrome c biogenes 92.8 0.099 2.1E-06 50.5 3.6 29 218-246 18-46 (195)
205 PRK10895 lipopolysaccharide AB 92.8 0.084 1.8E-06 52.6 3.2 29 221-250 24-52 (241)
206 PF12775 AAA_7: P-loop contain 92.8 0.087 1.9E-06 54.4 3.3 26 224-249 31-56 (272)
207 PF13238 AAA_18: AAA domain; P 92.8 0.086 1.9E-06 46.2 2.8 21 229-249 1-21 (129)
208 PRK14250 phosphate ABC transpo 92.7 0.087 1.9E-06 52.7 3.1 29 219-247 22-50 (241)
209 PRK11264 putative amino-acid A 92.7 0.086 1.9E-06 52.8 3.1 27 221-247 24-50 (250)
210 PRK14240 phosphate transporter 92.7 0.085 1.9E-06 52.9 3.1 29 218-246 21-49 (250)
211 PRK14274 phosphate ABC transpo 92.7 0.088 1.9E-06 53.2 3.2 27 221-247 33-59 (259)
212 PRK09493 glnQ glutamine ABC tr 92.7 0.089 1.9E-06 52.4 3.1 28 220-247 21-48 (240)
213 cd03295 ABC_OpuCA_Osmoprotecti 92.7 0.091 2E-06 52.5 3.2 27 221-247 22-48 (242)
214 cd03216 ABC_Carb_Monos_I This 92.7 0.096 2.1E-06 49.4 3.1 27 221-247 21-47 (163)
215 PRK14723 flhF flagellar biosyn 92.7 0.61 1.3E-05 54.8 10.2 124 224-352 183-318 (767)
216 cd03228 ABCC_MRP_Like The MRP 92.6 0.11 2.3E-06 49.3 3.5 36 221-257 23-58 (171)
217 PRK08760 replicative DNA helic 92.6 0.13 2.9E-06 57.2 4.7 67 209-278 211-278 (476)
218 PRK10575 iron-hydroxamate tran 92.6 0.084 1.8E-06 53.7 2.9 27 220-246 31-57 (265)
219 PRK13543 cytochrome c biogenes 92.6 0.09 2E-06 51.6 3.0 27 220-246 31-57 (214)
220 TIGR01188 drrA daunorubicin re 92.6 0.09 2E-06 54.6 3.1 28 220-247 13-40 (302)
221 PRK14255 phosphate ABC transpo 92.6 0.091 2E-06 52.7 3.1 26 221-246 26-51 (252)
222 cd03300 ABC_PotA_N PotA is an 92.6 0.099 2.1E-06 51.9 3.3 27 221-247 21-47 (232)
223 PRK10584 putative ABC transpor 92.6 0.094 2E-06 51.7 3.1 29 221-250 31-59 (228)
224 cd03270 ABC_UvrA_I The excisio 92.6 0.095 2.1E-06 52.2 3.1 27 221-247 16-42 (226)
225 cd03215 ABC_Carb_Monos_II This 92.6 0.093 2E-06 50.2 3.0 28 220-247 20-47 (182)
226 cd03223 ABCD_peroxisomal_ALDP 92.5 0.099 2.1E-06 49.5 3.1 27 221-247 22-48 (166)
227 cd03253 ABCC_ATM1_transporter 92.5 0.11 2.4E-06 51.4 3.6 28 220-247 21-48 (236)
228 PRK11629 lolD lipoprotein tran 92.5 0.097 2.1E-06 52.0 3.2 26 221-246 30-55 (233)
229 PRK14242 phosphate transporter 92.5 0.094 2E-06 52.7 3.1 27 221-247 27-53 (253)
230 TIGR03411 urea_trans_UrtD urea 92.5 0.095 2.1E-06 52.2 3.1 27 221-247 23-49 (242)
231 cd03263 ABC_subfamily_A The AB 92.5 0.096 2.1E-06 51.3 3.1 30 220-250 22-51 (220)
232 PRK11247 ssuB aliphatic sulfon 92.5 0.096 2.1E-06 53.4 3.2 29 219-247 31-59 (257)
233 PRK05800 cobU adenosylcobinami 92.5 0.18 3.8E-06 48.5 4.8 37 228-268 3-39 (170)
234 TIGR02770 nickel_nikD nickel i 92.5 0.094 2E-06 52.0 3.0 27 221-247 7-33 (230)
235 cd03268 ABC_BcrA_bacitracin_re 92.5 0.1 2.2E-06 50.8 3.1 27 221-247 21-47 (208)
236 PRK10247 putative ABC transpor 92.5 0.098 2.1E-06 51.8 3.1 28 220-247 27-54 (225)
237 COG4619 ABC-type uncharacteriz 92.5 0.098 2.1E-06 51.1 2.9 27 221-247 24-50 (223)
238 KOG0057 Mitochondrial Fe/S clu 92.5 0.13 2.8E-06 57.7 4.2 29 221-249 373-401 (591)
239 PRK15093 antimicrobial peptide 92.5 0.096 2.1E-06 55.3 3.2 33 215-247 21-54 (330)
240 TIGR00635 ruvB Holliday juncti 92.5 0.3 6.6E-06 50.2 6.8 23 226-248 30-52 (305)
241 COG4608 AppF ABC-type oligopep 92.4 0.11 2.5E-06 53.6 3.5 48 214-262 26-74 (268)
242 PRK14241 phosphate transporter 92.4 0.099 2.1E-06 52.8 3.1 28 220-247 24-51 (258)
243 PF13245 AAA_19: Part of AAA d 92.4 0.16 3.4E-06 42.6 3.7 27 226-252 9-36 (76)
244 PRK05595 replicative DNA helic 92.4 0.15 3.3E-06 56.0 4.8 57 208-265 182-239 (444)
245 PRK15177 Vi polysaccharide exp 92.4 0.1 2.2E-06 51.5 3.1 28 220-247 7-34 (213)
246 TIGR03005 ectoine_ehuA ectoine 92.4 0.1 2.2E-06 52.5 3.1 27 220-246 20-46 (252)
247 PRK13646 cbiO cobalt transport 92.4 0.081 1.8E-06 54.6 2.5 27 221-247 28-54 (286)
248 PRK12724 flagellar biosynthesi 92.4 0.76 1.6E-05 50.7 9.9 27 224-250 221-247 (432)
249 PRK11144 modC molybdate transp 92.4 0.12 2.5E-06 55.2 3.7 32 216-247 14-45 (352)
250 cd03246 ABCC_Protease_Secretio 92.4 0.11 2.5E-06 49.2 3.2 27 221-247 23-49 (173)
251 TIGR01184 ntrCD nitrate transp 92.4 0.1 2.2E-06 51.9 3.1 27 221-247 6-32 (230)
252 cd03230 ABC_DR_subfamily_A Thi 92.4 0.11 2.4E-06 49.3 3.1 26 221-246 21-46 (173)
253 TIGR00678 holB DNA polymerase 92.3 0.64 1.4E-05 44.6 8.4 25 227-251 15-39 (188)
254 PRK13538 cytochrome c biogenes 92.3 0.11 2.3E-06 50.7 3.0 29 218-246 19-47 (204)
255 TIGR02323 CP_lyasePhnK phospho 92.3 0.1 2.2E-06 52.4 3.0 28 220-247 23-50 (253)
256 PRK14239 phosphate transporter 92.3 0.11 2.3E-06 52.2 3.1 27 221-247 26-52 (252)
257 PRK15056 manganese/iron transp 92.3 0.1 2.3E-06 53.2 3.1 32 218-250 25-56 (272)
258 PRK10771 thiQ thiamine transpo 92.3 0.11 2.3E-06 51.7 3.0 29 218-246 17-45 (232)
259 TIGR02324 CP_lyasePhnL phospho 92.3 0.11 2.3E-06 51.2 3.1 27 220-246 28-54 (224)
260 PRK11831 putative ABC transpor 92.2 0.11 2.3E-06 53.1 3.1 32 218-250 25-56 (269)
261 PRK13641 cbiO cobalt transport 92.2 0.082 1.8E-06 54.5 2.3 27 221-247 28-54 (287)
262 PRK07004 replicative DNA helic 92.2 0.18 4E-06 55.8 5.1 59 209-268 195-254 (460)
263 PRK14273 phosphate ABC transpo 92.2 0.11 2.3E-06 52.3 3.1 27 221-247 28-54 (254)
264 PRK14248 phosphate ABC transpo 92.2 0.11 2.3E-06 52.9 3.1 27 221-247 42-68 (268)
265 PRK10908 cell division protein 92.2 0.11 2.4E-06 51.0 3.2 27 221-247 23-49 (222)
266 COG1120 FepC ABC-type cobalami 92.2 0.096 2.1E-06 53.9 2.7 31 218-248 20-50 (258)
267 PF00004 AAA: ATPase family as 92.2 0.12 2.6E-06 45.4 3.1 22 229-250 1-22 (132)
268 TIGR01288 nodI ATP-binding ABC 92.2 0.11 2.3E-06 54.1 3.1 28 220-247 24-51 (303)
269 TIGR02314 ABC_MetN D-methionin 92.2 0.11 2.3E-06 55.5 3.1 32 220-252 25-56 (343)
270 cd03369 ABCC_NFT1 Domain 2 of 92.2 0.11 2.4E-06 50.6 3.0 27 221-247 29-55 (207)
271 TIGR01189 ccmA heme ABC export 92.2 0.12 2.5E-06 50.1 3.2 27 220-246 20-46 (198)
272 PRK08506 replicative DNA helic 92.2 0.14 3E-06 57.0 4.1 55 209-265 174-229 (472)
273 TIGR00972 3a0107s01c2 phosphat 92.2 0.11 2.4E-06 52.0 3.1 28 220-247 21-48 (247)
274 PRK13548 hmuV hemin importer A 92.2 0.11 2.4E-06 52.7 3.1 27 221-247 23-49 (258)
275 COG3638 ABC-type phosphate/pho 92.2 0.17 3.7E-06 51.6 4.3 68 221-306 25-95 (258)
276 PF13671 AAA_33: AAA domain; P 92.2 1.8 3.9E-05 38.9 10.7 20 229-248 2-21 (143)
277 PRK13645 cbiO cobalt transport 92.2 0.11 2.4E-06 53.5 3.1 27 221-247 32-58 (289)
278 PF07728 AAA_5: AAA domain (dy 92.1 0.27 5.9E-06 44.5 5.3 22 229-250 2-23 (139)
279 PRK11308 dppF dipeptide transp 92.1 0.11 2.4E-06 54.9 3.1 28 220-247 35-62 (327)
280 cd03290 ABCC_SUR1_N The SUR do 92.1 0.11 2.5E-06 50.8 3.0 29 221-250 22-50 (218)
281 PRK14262 phosphate ABC transpo 92.1 0.12 2.6E-06 51.9 3.2 28 221-249 24-51 (250)
282 PF13191 AAA_16: AAA ATPase do 92.1 0.21 4.6E-06 46.7 4.7 46 220-266 18-63 (185)
283 PRK14237 phosphate transporter 92.1 0.12 2.6E-06 52.7 3.2 27 221-247 41-67 (267)
284 PRK14243 phosphate transporter 92.1 0.12 2.6E-06 52.6 3.1 28 220-247 30-57 (264)
285 cd03217 ABC_FeS_Assembly ABC-t 92.1 0.12 2.6E-06 50.3 3.0 29 219-247 19-47 (200)
286 COG1136 SalX ABC-type antimicr 92.0 0.12 2.6E-06 52.2 3.1 46 215-261 19-65 (226)
287 TIGR03740 galliderm_ABC gallid 92.0 0.12 2.7E-06 50.8 3.1 26 221-246 21-46 (223)
288 cd03248 ABCC_TAP TAP, the Tran 92.0 0.12 2.6E-06 50.9 3.1 29 221-250 35-63 (226)
289 PRK09544 znuC high-affinity zi 92.0 0.12 2.6E-06 52.3 3.2 27 221-247 25-51 (251)
290 PRK14266 phosphate ABC transpo 92.0 0.12 2.7E-06 51.7 3.2 28 220-247 23-50 (250)
291 PRK14256 phosphate ABC transpo 92.0 0.12 2.6E-06 51.9 3.1 27 221-247 25-51 (252)
292 PRK13649 cbiO cobalt transport 92.0 0.12 2.5E-06 53.0 3.0 27 221-247 28-54 (280)
293 PRK13632 cbiO cobalt transport 92.0 0.12 2.6E-06 52.7 3.1 29 221-250 30-58 (271)
294 COG0444 DppD ABC-type dipeptid 92.0 0.15 3.3E-06 53.8 3.9 36 214-249 18-54 (316)
295 PRK10418 nikD nickel transport 92.0 0.12 2.6E-06 52.1 3.0 31 219-250 22-52 (254)
296 PF05673 DUF815: Protein of un 91.9 0.36 7.7E-06 49.5 6.4 28 225-252 51-78 (249)
297 COG2874 FlaH Predicted ATPases 91.9 1.2 2.5E-05 45.1 9.8 161 224-417 26-191 (235)
298 PRK13648 cbiO cobalt transport 91.9 0.13 2.7E-06 52.5 3.2 32 218-250 27-58 (269)
299 cd03233 ABC_PDR_domain1 The pl 91.9 0.11 2.4E-06 50.6 2.7 29 221-250 28-56 (202)
300 cd03267 ABC_NatA_like Similar 91.9 0.12 2.7E-06 51.5 3.0 27 221-247 42-68 (236)
301 TIGR03771 anch_rpt_ABC anchore 91.9 0.12 2.7E-06 51.0 3.1 26 222-247 2-27 (223)
302 PRK13638 cbiO cobalt transport 91.9 0.12 2.5E-06 52.8 2.9 26 221-246 22-47 (271)
303 PRK10253 iron-enterobactin tra 91.9 0.12 2.6E-06 52.6 2.9 29 221-250 28-56 (265)
304 PRK10744 pstB phosphate transp 91.9 0.13 2.7E-06 52.2 3.1 27 221-247 34-60 (260)
305 TIGR02769 nickel_nikE nickel i 91.9 0.12 2.7E-06 52.4 3.0 32 218-250 29-60 (265)
306 PRK14238 phosphate transporter 91.8 0.13 2.8E-06 52.5 3.2 29 221-250 45-73 (271)
307 PRK14087 dnaA chromosomal repl 91.8 0.82 1.8E-05 50.6 9.6 33 228-260 143-175 (450)
308 PRK07773 replicative DNA helic 91.8 0.21 4.6E-06 59.7 5.3 57 208-265 198-255 (886)
309 PRK14245 phosphate ABC transpo 91.8 0.13 2.8E-06 51.6 3.1 27 220-246 23-49 (250)
310 cd03237 ABC_RNaseL_inhibitor_d 91.8 0.13 2.8E-06 52.1 3.1 25 222-246 21-45 (246)
311 PRK13650 cbiO cobalt transport 91.8 0.14 3E-06 52.6 3.4 34 218-252 25-58 (279)
312 PRK10851 sulfate/thiosulfate t 91.8 0.13 2.8E-06 55.1 3.2 32 218-250 20-51 (353)
313 cd03236 ABC_RNaseL_inhibitor_d 91.8 0.13 2.8E-06 52.5 3.0 27 223-250 23-49 (255)
314 cd03213 ABCG_EPDR ABCG transpo 91.8 0.13 2.8E-06 49.9 2.9 27 221-247 30-56 (194)
315 cd03282 ABC_MSH4_euk MutS4 hom 91.8 1.7 3.6E-05 43.0 10.8 33 216-248 19-51 (204)
316 cd03264 ABC_drug_resistance_li 91.8 0.13 2.7E-06 50.2 2.9 26 221-247 21-46 (211)
317 PRK11300 livG leucine/isoleuci 91.8 0.13 2.8E-06 51.7 3.0 26 221-246 26-51 (255)
318 PRK14271 phosphate ABC transpo 91.8 0.13 2.9E-06 52.7 3.2 30 218-247 39-68 (276)
319 TIGR01277 thiQ thiamine ABC tr 91.7 0.14 3E-06 50.2 3.1 30 218-247 16-45 (213)
320 PRK14268 phosphate ABC transpo 91.7 0.14 3E-06 51.8 3.1 28 220-247 32-59 (258)
321 COG3854 SpoIIIAA ncharacterize 91.7 0.19 4E-06 51.3 4.0 40 229-268 140-181 (308)
322 PRK14244 phosphate ABC transpo 91.6 0.14 3.1E-06 51.4 3.2 30 220-250 25-54 (251)
323 PRK14272 phosphate ABC transpo 91.6 0.14 3E-06 51.3 3.1 26 221-246 25-50 (252)
324 PRK13643 cbiO cobalt transport 91.6 0.13 2.9E-06 53.1 3.0 32 218-250 24-55 (288)
325 cd00267 ABC_ATPase ABC (ATP-bi 91.6 0.15 3.3E-06 47.4 3.1 30 218-247 17-46 (157)
326 cd03289 ABCC_CFTR2 The CFTR su 91.6 0.16 3.5E-06 52.4 3.6 31 221-252 25-55 (275)
327 PRK06904 replicative DNA helic 91.6 0.17 3.7E-06 56.3 4.0 68 208-278 202-270 (472)
328 PRK11614 livF leucine/isoleuci 91.6 0.13 2.8E-06 51.1 2.8 26 221-246 26-51 (237)
329 TIGR00968 3a0106s01 sulfate AB 91.6 0.15 3.2E-06 51.0 3.2 27 221-247 21-47 (237)
330 TIGR02868 CydC thiol reductant 91.6 0.11 2.3E-06 58.0 2.4 29 219-247 354-382 (529)
331 cd03294 ABC_Pro_Gly_Bertaine T 91.6 0.14 3.1E-06 52.2 3.1 28 220-247 44-71 (269)
332 COG1127 Ttg2A ABC-type transpo 91.6 0.12 2.6E-06 52.8 2.5 41 220-260 28-68 (263)
333 PRK14261 phosphate ABC transpo 91.6 0.14 3.1E-06 51.4 3.1 26 221-246 27-52 (253)
334 PRK11432 fbpC ferric transport 91.6 0.14 3E-06 54.8 3.2 31 219-250 25-55 (351)
335 cd03234 ABCG_White The White s 91.6 0.14 3E-06 50.6 2.9 28 220-247 27-54 (226)
336 PRK14259 phosphate ABC transpo 91.6 0.14 3E-06 52.3 3.0 28 220-247 33-60 (269)
337 TIGR02982 heterocyst_DevA ABC 91.5 0.15 3.3E-06 50.2 3.2 26 221-246 26-51 (220)
338 PRK10419 nikE nickel transport 91.5 0.14 3E-06 52.3 3.0 31 219-250 31-61 (268)
339 PRK09473 oppD oligopeptide tra 91.5 0.13 2.8E-06 54.4 2.9 28 220-247 36-63 (330)
340 PRK14251 phosphate ABC transpo 91.5 0.15 3.2E-06 51.2 3.2 29 221-250 25-53 (251)
341 PF13086 AAA_11: AAA domain; P 91.5 0.27 5.8E-06 47.3 4.9 51 228-279 19-75 (236)
342 PRK15079 oligopeptide ABC tran 91.5 0.14 3.1E-06 54.2 3.1 30 218-247 39-68 (331)
343 PRK11022 dppD dipeptide transp 91.5 0.14 3E-06 54.1 3.1 29 220-248 27-55 (326)
344 PRK10867 signal recognition pa 91.5 1.3 2.8E-05 49.0 10.6 44 227-270 101-145 (433)
345 PRK11650 ugpC glycerol-3-phosp 91.5 0.14 3E-06 54.8 3.1 31 219-250 23-53 (356)
346 PRK09183 transposase/IS protei 91.5 0.16 3.5E-06 52.0 3.4 36 223-260 99-134 (259)
347 COG1134 TagH ABC-type polysacc 91.5 0.14 3.1E-06 52.2 3.0 32 218-250 45-76 (249)
348 PRK08840 replicative DNA helic 91.5 0.19 4.1E-06 55.9 4.2 59 208-267 198-257 (464)
349 PRK11231 fecE iron-dicitrate t 91.5 0.15 3.2E-06 51.4 3.1 27 221-247 23-49 (255)
350 PRK14270 phosphate ABC transpo 91.5 0.15 3.3E-06 51.2 3.1 29 221-250 25-53 (251)
351 COG4172 ABC-type uncharacteriz 91.5 0.16 3.4E-06 55.5 3.4 46 214-261 300-346 (534)
352 PRK14269 phosphate ABC transpo 91.5 0.15 3.3E-06 51.1 3.2 28 221-249 23-50 (246)
353 PRK14265 phosphate ABC transpo 91.5 0.15 3.3E-06 52.2 3.2 28 219-246 39-66 (274)
354 PRK13546 teichoic acids export 91.5 0.15 3.2E-06 52.3 3.1 30 218-247 42-71 (264)
355 PRK11889 flhF flagellar biosyn 91.5 1.1 2.3E-05 49.3 9.7 43 224-266 239-281 (436)
356 TIGR01618 phage_P_loop phage n 91.4 0.24 5.1E-06 49.9 4.4 19 228-246 14-32 (220)
357 PRK14957 DNA polymerase III su 91.4 0.76 1.6E-05 52.2 8.9 32 326-357 117-149 (546)
358 PRK13651 cobalt transporter AT 91.4 0.15 3.2E-06 53.4 3.1 31 219-250 26-56 (305)
359 PRK14253 phosphate ABC transpo 91.4 0.15 3.3E-06 51.0 3.1 29 221-250 24-52 (249)
360 PRK14260 phosphate ABC transpo 91.4 0.15 3.2E-06 51.6 3.1 28 221-248 28-55 (259)
361 cd03232 ABC_PDR_domain2 The pl 91.4 0.15 3.3E-06 49.3 2.9 27 221-247 28-54 (192)
362 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 91.4 0.16 3.4E-06 50.5 3.1 26 221-246 43-68 (224)
363 PRK09984 phosphonate/organopho 91.4 0.15 3.2E-06 51.6 3.0 29 221-250 25-53 (262)
364 cd03297 ABC_ModC_molybdenum_tr 91.4 0.17 3.7E-06 49.5 3.3 29 218-247 16-44 (214)
365 PRK14235 phosphate transporter 91.4 0.16 3.5E-06 51.7 3.2 27 221-247 40-66 (267)
366 PRK13635 cbiO cobalt transport 91.4 0.17 3.6E-06 52.1 3.3 35 221-256 28-62 (279)
367 PRK14275 phosphate ABC transpo 91.3 0.15 3.4E-06 52.5 3.1 30 218-247 57-86 (286)
368 CHL00131 ycf16 sulfate ABC tra 91.3 0.14 3.1E-06 51.2 2.8 28 221-249 28-55 (252)
369 PRK14249 phosphate ABC transpo 91.3 0.16 3.4E-06 51.0 3.1 26 221-246 25-50 (251)
370 cd03288 ABCC_SUR2 The SUR doma 91.3 0.16 3.4E-06 51.4 3.1 27 221-247 42-68 (257)
371 PRK10619 histidine/lysine/argi 91.3 0.16 3.5E-06 51.2 3.2 27 221-247 26-52 (257)
372 TIGR03265 PhnT2 putative 2-ami 91.3 0.16 3.4E-06 54.4 3.2 31 219-250 23-53 (353)
373 PRK13547 hmuV hemin importer A 91.3 0.15 3.3E-06 52.3 3.0 27 220-246 21-47 (272)
374 PF03205 MobB: Molybdopterin g 91.3 0.28 6.1E-06 45.7 4.5 52 228-281 2-57 (140)
375 cd02027 APSK Adenosine 5'-phos 91.2 0.99 2.1E-05 42.1 8.1 23 229-251 2-24 (149)
376 TIGR03522 GldA_ABC_ATP gliding 91.2 0.16 3.4E-06 52.9 3.1 27 221-247 23-49 (301)
377 PRK15112 antimicrobial peptide 91.2 0.16 3.6E-06 51.6 3.1 32 218-250 31-62 (267)
378 PTZ00301 uridine kinase; Provi 91.2 0.27 5.8E-06 49.0 4.5 22 229-250 6-27 (210)
379 PRK13647 cbiO cobalt transport 91.2 0.16 3.5E-06 52.0 3.1 33 215-250 22-54 (274)
380 PRK13637 cbiO cobalt transport 91.2 0.16 3.5E-06 52.4 3.1 31 221-252 28-58 (287)
381 COG4988 CydD ABC-type transpor 91.2 0.18 3.9E-06 56.9 3.6 120 218-347 339-493 (559)
382 PRK14254 phosphate ABC transpo 91.2 0.17 3.6E-06 52.3 3.2 27 221-247 60-86 (285)
383 cd03291 ABCC_CFTR1 The CFTR su 91.2 0.16 3.6E-06 52.5 3.1 30 218-247 55-84 (282)
384 PRK14264 phosphate ABC transpo 91.1 0.17 3.6E-06 52.8 3.2 29 219-247 64-92 (305)
385 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.1 0.17 3.6E-06 46.9 2.8 26 221-246 21-46 (144)
386 PRK13639 cbiO cobalt transport 91.1 0.17 3.7E-06 51.8 3.1 28 220-247 22-49 (275)
387 PRK13631 cbiO cobalt transport 91.1 0.18 4E-06 53.1 3.4 31 221-252 47-77 (320)
388 cd03244 ABCC_MRP_domain2 Domai 91.1 0.18 3.8E-06 49.5 3.1 27 221-247 25-51 (221)
389 COG4586 ABC-type uncharacteriz 91.1 0.12 2.6E-06 53.8 1.9 55 215-269 39-93 (325)
390 PRK14252 phosphate ABC transpo 91.1 0.18 3.8E-06 51.2 3.2 32 218-250 34-65 (265)
391 PRK13640 cbiO cobalt transport 91.0 0.17 3.7E-06 52.0 3.1 27 221-247 28-54 (282)
392 TIGR03499 FlhF flagellar biosy 91.0 0.36 7.9E-06 50.0 5.5 30 224-253 192-221 (282)
393 TIGR01526 nadR_NMN_Atrans nico 91.0 0.63 1.4E-05 49.3 7.4 91 226-348 162-252 (325)
394 PRK07940 DNA polymerase III su 91.0 1 2.2E-05 49.1 9.2 26 225-250 35-60 (394)
395 cd02025 PanK Pantothenate kina 91.0 0.27 5.8E-06 49.1 4.4 22 229-250 2-23 (220)
396 TIGR02142 modC_ABC molybdenum 91.0 0.21 4.5E-06 53.3 3.8 29 218-246 15-43 (354)
397 PRK13644 cbiO cobalt transport 91.0 0.18 3.8E-06 51.8 3.1 28 220-247 22-49 (274)
398 PRK06995 flhF flagellar biosyn 90.9 0.36 7.7E-06 54.0 5.6 37 223-259 253-289 (484)
399 TIGR00750 lao LAO/AO transport 90.9 0.32 6.9E-06 50.7 5.0 31 222-252 30-60 (300)
400 PRK05636 replicative DNA helic 90.9 0.33 7.2E-06 54.5 5.4 59 208-267 246-305 (505)
401 cd03299 ABC_ModC_like Archeal 90.9 0.19 4E-06 50.1 3.1 26 221-246 20-45 (235)
402 PRK11176 lipid transporter ATP 90.9 0.19 4.2E-06 56.6 3.6 30 220-250 363-392 (582)
403 COG1135 AbcC ABC-type metal io 90.8 0.33 7.1E-06 51.3 4.9 47 213-260 18-65 (339)
404 TIGR03873 F420-0_ABC_ATP propo 90.8 0.18 3.9E-06 50.9 2.9 29 221-250 22-50 (256)
405 PRK13536 nodulation factor exp 90.8 0.19 4E-06 53.6 3.2 28 220-247 61-88 (340)
406 PF00308 Bac_DnaA: Bacterial d 90.8 0.55 1.2E-05 46.8 6.3 47 227-279 35-81 (219)
407 PRK13633 cobalt transporter AT 90.8 0.15 3.3E-06 52.3 2.4 27 221-247 31-57 (280)
408 PRK03846 adenylylsulfate kinas 90.8 0.81 1.8E-05 44.5 7.4 27 224-250 22-48 (198)
409 PRK14236 phosphate transporter 90.8 0.19 4.2E-06 51.3 3.2 26 221-246 46-71 (272)
410 TIGR02639 ClpA ATP-dependent C 90.7 0.4 8.6E-06 56.2 6.0 27 226-252 203-229 (731)
411 PRK13537 nodulation ABC transp 90.7 0.19 4E-06 52.6 3.0 31 221-252 28-58 (306)
412 PRK00300 gmk guanylate kinase; 90.7 0.21 4.6E-06 48.3 3.2 26 224-249 3-28 (205)
413 COG0552 FtsY Signal recognitio 90.7 1.1 2.4E-05 47.8 8.6 86 228-333 141-227 (340)
414 PRK09580 sufC cysteine desulfu 90.7 0.18 3.9E-06 50.3 2.8 28 221-249 22-49 (248)
415 PRK11000 maltose/maltodextrin 90.6 0.19 4.1E-06 54.0 3.1 31 219-250 22-52 (369)
416 PRK06526 transposase; Provisio 90.6 0.32 6.9E-06 49.8 4.6 47 224-278 96-142 (254)
417 PRK05541 adenylylsulfate kinas 90.6 0.42 9.1E-06 45.3 5.1 30 222-251 3-32 (176)
418 PRK08727 hypothetical protein; 90.6 2.8 6E-05 42.1 11.2 37 228-265 43-79 (233)
419 PRK14263 phosphate ABC transpo 90.6 0.21 4.5E-06 50.9 3.2 29 220-249 28-56 (261)
420 TIGR03263 guanyl_kin guanylate 90.6 0.19 4.1E-06 47.5 2.7 23 226-248 1-23 (180)
421 PRK00080 ruvB Holliday junctio 90.5 0.59 1.3E-05 49.1 6.7 23 227-249 52-74 (328)
422 PRK13634 cbiO cobalt transport 90.5 0.2 4.4E-06 51.8 3.1 27 221-247 28-54 (290)
423 TIGR00235 udk uridine kinase. 90.5 0.2 4.3E-06 49.0 2.8 24 225-248 5-28 (207)
424 PLN00020 ribulose bisphosphate 90.5 0.81 1.8E-05 49.8 7.6 21 228-248 150-170 (413)
425 PF01695 IstB_IS21: IstB-like 90.5 0.37 8.1E-06 46.6 4.7 47 223-278 44-91 (178)
426 PRK09452 potA putrescine/sperm 90.5 0.2 4.3E-06 54.1 3.1 32 218-250 32-63 (375)
427 PRK11153 metN DL-methionine tr 90.4 0.21 4.5E-06 53.2 3.1 30 220-250 25-54 (343)
428 PF03266 NTPase_1: NTPase; In 90.4 0.22 4.9E-06 47.8 3.1 25 228-252 1-25 (168)
429 PRK13652 cbiO cobalt transport 90.4 0.22 4.7E-06 51.1 3.2 27 221-247 25-51 (277)
430 PRK06321 replicative DNA helic 90.4 0.34 7.3E-06 54.0 4.9 60 208-268 207-267 (472)
431 PRK14246 phosphate ABC transpo 90.4 0.21 4.5E-06 50.7 3.0 28 221-249 31-58 (257)
432 TIGR02322 phosphon_PhnN phosph 90.4 0.24 5.1E-06 47.0 3.2 24 226-249 1-24 (179)
433 PRK14949 DNA polymerase III su 90.4 0.74 1.6E-05 54.9 7.7 32 326-357 117-149 (944)
434 TIGR01186 proV glycine betaine 90.3 0.2 4.4E-06 53.9 3.0 33 219-252 12-44 (363)
435 COG4555 NatA ABC-type Na+ tran 90.3 0.32 6.9E-06 48.8 4.0 47 218-265 20-66 (245)
436 TIGR03345 VI_ClpV1 type VI sec 90.3 0.47 1E-05 56.6 6.2 26 227-252 209-234 (852)
437 COG4181 Predicted ABC-type tra 90.3 0.21 4.6E-06 48.9 2.8 23 222-244 32-54 (228)
438 COG1123 ATPase components of v 90.3 0.22 4.8E-06 56.1 3.3 48 214-262 304-352 (539)
439 PRK14258 phosphate ABC transpo 90.3 0.22 4.8E-06 50.5 3.1 29 221-250 28-56 (261)
440 COG1474 CDC6 Cdc6-related prot 90.3 1 2.2E-05 48.7 8.2 103 216-340 29-135 (366)
441 PRK14257 phosphate ABC transpo 90.2 0.22 4.8E-06 52.7 3.2 27 221-247 103-129 (329)
442 PRK03695 vitamin B12-transport 90.2 0.2 4.4E-06 50.4 2.7 29 219-247 15-43 (248)
443 COG4987 CydC ABC-type transpor 90.2 0.22 4.7E-06 55.9 3.1 31 220-250 358-388 (573)
444 PF03308 ArgK: ArgK protein; 90.2 0.38 8.3E-06 49.6 4.7 38 216-253 18-56 (266)
445 PRK12727 flagellar biosynthesi 90.2 0.37 8.1E-06 54.4 5.0 34 221-254 345-378 (559)
446 cd02028 UMPK_like Uridine mono 90.2 0.39 8.5E-06 46.3 4.5 23 229-251 2-24 (179)
447 PRK10636 putative ABC transpor 90.2 0.2 4.4E-06 57.6 3.0 30 218-247 19-48 (638)
448 PRK08006 replicative DNA helic 90.1 0.31 6.6E-06 54.3 4.3 59 208-267 205-264 (471)
449 PF01926 MMR_HSR1: 50S ribosom 90.1 0.23 4.9E-06 43.6 2.6 21 228-248 1-21 (116)
450 PLN03073 ABC transporter F fam 90.1 0.2 4.4E-06 58.5 2.9 30 218-247 195-224 (718)
451 PRK08233 hypothetical protein; 90.0 0.26 5.6E-06 46.3 3.1 25 225-249 2-26 (182)
452 COG3839 MalK ABC-type sugar tr 90.0 0.23 5E-06 53.0 3.0 31 219-250 22-52 (338)
453 COG0488 Uup ATPase components 90.0 0.24 5.2E-06 55.9 3.4 31 218-248 340-370 (530)
454 PRK13642 cbiO cobalt transport 89.9 0.25 5.4E-06 50.7 3.1 29 221-250 28-56 (277)
455 TIGR01425 SRP54_euk signal rec 89.9 2.5 5.3E-05 46.8 10.9 26 227-252 101-126 (429)
456 PRK07994 DNA polymerase III su 89.9 0.99 2.2E-05 52.2 8.2 107 230-357 42-149 (647)
457 TIGR03420 DnaA_homol_Hda DnaA 89.9 0.23 5.1E-06 48.5 2.8 41 223-264 35-75 (226)
458 TIGR00959 ffh signal recogniti 89.9 2.4 5.3E-05 46.8 10.9 43 228-270 101-143 (428)
459 TIGR03258 PhnT 2-aminoethylpho 89.8 0.25 5.4E-06 53.1 3.2 31 219-250 24-54 (362)
460 PRK05480 uridine/cytidine kina 89.8 0.28 6.2E-06 47.8 3.3 27 224-250 4-30 (209)
461 cd01130 VirB11-like_ATPase Typ 89.8 0.27 5.8E-06 47.4 3.1 27 223-249 22-48 (186)
462 PRK10522 multidrug transporter 89.8 0.29 6.3E-06 55.0 3.8 28 221-249 344-371 (547)
463 cd03280 ABC_MutS2 MutS2 homolo 89.7 0.34 7.5E-06 47.2 3.8 42 215-256 16-58 (200)
464 TIGR03269 met_CoM_red_A2 methy 89.7 0.25 5.3E-06 55.2 3.1 30 219-248 19-48 (520)
465 PRK14956 DNA polymerase III su 89.7 1 2.2E-05 50.4 7.8 109 228-357 42-151 (484)
466 PRK00889 adenylylsulfate kinas 89.6 0.5 1.1E-05 44.7 4.7 27 225-251 3-29 (175)
467 PRK10078 ribose 1,5-bisphospho 89.6 0.27 5.9E-06 47.3 3.0 23 225-247 1-23 (186)
468 KOG4658 Apoptotic ATPase [Sign 89.6 0.66 1.4E-05 55.6 6.7 62 215-278 169-232 (889)
469 PRK11607 potG putrescine trans 89.6 0.26 5.7E-06 53.2 3.1 31 219-250 38-68 (377)
470 COG1484 DnaC DNA replication p 89.6 0.78 1.7E-05 46.9 6.5 47 225-280 104-151 (254)
471 PRK14530 adenylate kinase; Pro 89.6 0.3 6.6E-06 48.0 3.3 25 225-249 2-26 (215)
472 PRK09435 membrane ATPase/prote 89.6 0.39 8.5E-06 51.2 4.4 30 223-252 53-82 (332)
473 cd04138 H_N_K_Ras_like H-Ras/N 89.6 0.24 5.2E-06 44.7 2.4 22 228-249 3-24 (162)
474 PRK13636 cbiO cobalt transport 89.6 0.28 6E-06 50.6 3.1 30 220-250 26-55 (283)
475 CHL00181 cbbX CbbX; Provisiona 89.5 3.1 6.6E-05 43.4 10.9 27 223-249 56-82 (287)
476 TIGR03689 pup_AAA proteasome A 89.5 0.75 1.6E-05 51.8 6.7 23 228-250 218-240 (512)
477 PRK11174 cysteine/glutathione 89.4 0.23 5E-06 56.1 2.7 29 220-248 370-398 (588)
478 TIGR01193 bacteriocin_ABC ABC- 89.4 0.24 5.1E-06 57.4 2.8 29 218-246 492-520 (708)
479 TIGR02857 CydD thiol reductant 89.4 0.3 6.6E-06 54.4 3.5 26 221-246 343-368 (529)
480 PRK14721 flhF flagellar biosyn 89.3 0.53 1.1E-05 51.8 5.2 29 222-250 187-215 (420)
481 PRK11147 ABC transporter ATPas 89.3 0.25 5.4E-06 56.8 2.8 31 219-250 22-52 (635)
482 PF00910 RNA_helicase: RNA hel 89.3 0.36 7.8E-06 42.5 3.2 24 229-252 1-24 (107)
483 cd02023 UMPK Uridine monophosp 89.3 0.5 1.1E-05 45.6 4.5 21 229-249 2-22 (198)
484 PRK15064 ABC transporter ATP-b 89.3 0.27 5.9E-06 55.0 3.1 29 219-247 20-48 (530)
485 PRK08084 DNA replication initi 89.3 0.39 8.4E-06 48.3 3.9 40 225-265 44-83 (235)
486 PRK14531 adenylate kinase; Pro 89.3 0.32 6.9E-06 46.7 3.1 23 227-249 3-25 (183)
487 PRK06217 hypothetical protein; 89.2 0.31 6.7E-06 46.7 3.0 23 227-249 2-24 (183)
488 COG4167 SapF ABC-type antimicr 89.2 0.28 6.1E-06 48.5 2.7 27 220-246 33-59 (267)
489 PRK14955 DNA polymerase III su 89.2 1.3 2.8E-05 48.1 8.1 22 229-250 41-62 (397)
490 COG1122 CbiO ABC-type cobalt t 89.2 0.3 6.5E-06 49.6 3.0 34 218-252 22-55 (235)
491 PRK10762 D-ribose transporter 89.2 0.27 5.8E-06 54.7 2.9 29 219-247 23-51 (501)
492 PF12846 AAA_10: AAA-like doma 89.2 0.48 1E-05 47.6 4.5 44 228-275 3-46 (304)
493 PRK10636 putative ABC transpor 89.2 0.27 5.9E-06 56.6 3.0 29 219-247 331-359 (638)
494 PRK06696 uridine kinase; Valid 89.1 0.48 1E-05 47.0 4.4 24 228-251 24-47 (223)
495 cd00876 Ras Ras family. The R 89.0 0.25 5.5E-06 44.5 2.2 21 228-248 1-21 (160)
496 PRK11819 putative ABC transpor 89.0 0.29 6.2E-06 55.3 3.1 31 219-250 26-56 (556)
497 TIGR03796 NHPM_micro_ABC1 NHPM 89.0 0.24 5.2E-06 57.3 2.5 28 220-247 499-526 (710)
498 COG1618 Predicted nucleotide k 89.0 0.51 1.1E-05 45.7 4.2 32 228-261 7-38 (179)
499 PRK10790 putative multidrug tr 89.0 0.26 5.6E-06 55.8 2.7 29 218-246 359-387 (592)
500 PRK11160 cysteine/glutathione 89.0 0.35 7.6E-06 54.8 3.7 28 221-249 361-388 (574)
No 1
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=2.3e-148 Score=1139.47 Aligned_cols=461 Identities=77% Similarity=1.165 Sum_probs=450.6
Q ss_pred ceeeEEEEECCeEEEEeC--CCCchhhhceEEeccCc-eeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceec
Q 008638 86 AIGQVCQVIGAVVDVRFD--EGLPPILTALEVVDHSV-RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVP 162 (558)
Q Consensus 86 ~~G~V~~V~G~VVdv~F~--~gLp~i~~~Lev~~~~~-~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~Vp 162 (558)
+.|+|+||+|+||||+|+ +.||.++++|++...+. .+++||++|+|++.||+|+|+.++||.+|+.|.+||+|++||
T Consensus 2 ~~G~vvqv~g~VvdV~F~~~~~lP~I~naL~~~~~~~~~~~leV~q~lg~~~VR~Iam~~t~gl~rg~~v~dtg~pi~VP 81 (468)
T COG0055 2 NKGKVVQVIGPVVDVEFPEEDELPEIYNALEVQNGNQGTLVLEVAQHLGDNVVRTIAMGSTDGLVRGLEVIDTGKPISVP 81 (468)
T ss_pred CCceEEEEEeeEEEEEecCcccCchhhhhheeccCCcceEeeehHHHhCCCeEEEEEecCccCcccCcEEecCCCceEEe
Confidence 469999999999999997 35999999999987543 489999999999999999999999999999999999999999
Q ss_pred cCccccceEEEEecccccccCCCccc--ccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChh
Q 008638 163 VGRVTLGRIMNVIGEPIDEKGDLKTE--HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240 (558)
Q Consensus 163 VG~~lLGRV~d~lG~PiD~~~~i~~~--~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT 240 (558)
||+.+||||+|++|+|||+.+++... .+||||+++|.+.++.+..|+|+||||+||+|+|+.||+|+|||||+|||||
T Consensus 82 VG~~~lgri~nvlG~~iD~~~~~~~~~~~~~~Ih~~~p~~~e~~~~~EIleTGIKVIDll~P~~kGgKiGLFGGAGVGKT 161 (468)
T COG0055 82 VGKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKT 161 (468)
T ss_pred cchhhcccchhccCCcccccCCCCccccceeeccCCCCchhhcccchhhhhhCceEEEEecccccCceeeeeccCCccce
Confidence 99999999999999999999999866 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHH
Q 008638 241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE 320 (558)
Q Consensus 241 ~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAE 320 (558)
+|++|+|+|+++.|++++||+++|||+||++|+|.||+|+|++ +||++|++||||||++|+|++++|+|+||
T Consensus 162 Vl~~ELI~Nia~~h~g~SVFaGvGERtREGndLy~Em~es~vl--------~ktalv~gQMNEpPGaR~RValtGlT~AE 233 (468)
T COG0055 162 VLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVL--------DKTALVFGQMNEPPGARMRVALTGLTMAE 233 (468)
T ss_pred eeHHHHHHHHHHHcCCeEEEEeccccccchHHHHHHHHhcCCC--------CceeEEEeecCCCCcceeeehhhhhhHHH
Confidence 9999999999999999999999999999999999999999876 48999999999999999999999999999
Q ss_pred HhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCCCCch
Q 008638 321 HFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPA 400 (558)
Q Consensus 321 yfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~dpi 400 (558)
||||++|+|||||+|||+||.||.+|||.+|||+||+.||||+|.++++.|+||++++++||||++|+||+|+||+|||.
T Consensus 234 yfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~PSavGYQpTLatemg~lQERItstk~GSITSiQavyvPaDDlTDPa 313 (468)
T COG0055 234 YFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSITSVQAVYVPADDLTDPA 313 (468)
T ss_pred HhhcccCCeEEEEehhhhHHhhcchHHHHHhccCccccccCchhHHHHHHHHHHHhcCCCCceEEEEEEEeccccCCCcc
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCChhHH
Q 008638 401 PATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDK 480 (558)
Q Consensus 401 p~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~~~ 480 (558)
|.++|+|||++++|||++|++|+|||||||.|.||.++|.++|++||++|++++++|++|+||||||+|+|+|+||++||
T Consensus 314 pattFaHLDat~vLsR~ia~~GIyPAvDPL~StSr~l~p~ivGe~Hy~va~~vq~iLqrYkeLqDIIaILGmdELseedk 393 (468)
T COG0055 314 PATTFAHLDATTVLSRQIAALGIYPAVDPLDSTSRALDPKIVGEEHYEVAREVQSILQRYKELQDIIAILGMDELSEEDK 393 (468)
T ss_pred hhhhhhhcccceeeeHhHHhcCCCcccCcccccccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhcChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCccccccccCHHHHHHHHHHHHH
Q 008638 481 LTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIAK 554 (558)
Q Consensus 481 ~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~f~~~g~~~~~~~k~~~~~~ 554 (558)
++|.|||+|++||+|||+++|.|||.||+||+|+|||++|++|++|+||++||++|||||+|+|+.+|+++|.+
T Consensus 394 ~~V~rArki~~FlSQpF~vAE~FTg~pG~~V~l~dti~~fk~Il~G~yd~~pE~aF~~vGsi~e~~eka~~~~~ 467 (468)
T COG0055 394 LTVARARKIQRFLSQPFFVAEVFTGSPGKYVPLKDTIRGFKRILEGKYDHLPEQAFYMVGSIEEAVEKAKKLGK 467 (468)
T ss_pred HHHHHHHHHHHHhcCcchhhheecCCCceeeeHHHHHHHHHHHhCCCcccCCHHHHhhcCcHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999864
No 2
>KOG1350 consensus F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.5e-146 Score=1104.77 Aligned_cols=474 Identities=81% Similarity=1.221 Sum_probs=466.2
Q ss_pred ccCCceeeEEEEECCeEEEEeCCCCchhhhceEEeccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCcee
Q 008638 82 TGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITV 161 (558)
Q Consensus 82 ~~~~~~G~V~~V~G~VVdv~F~~gLp~i~~~Lev~~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~V 161 (558)
+++++.|+|++|+|+||||.|++++|+|+|+|++.+.+.++++||+||+|+|+|||++|+.|+||.+|++|.+||.|++|
T Consensus 47 ~a~~~~G~i~avIGavvDv~F~~~~P~ilNaLev~~~~~~lvlEV~qhlG~n~VR~iAMdgTEGLvRG~~VlDtG~Pi~i 126 (521)
T KOG1350|consen 47 AAKKNKGRIVAVIGAVVDVQFEEGLPPILNALEVKGRDTRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGYPISI 126 (521)
T ss_pred hhcccCCcEEEEEeeeEEEecCCCCcchhhceeecCCCceeeeHHHHHhCcCeEEEEEecCchhhhcCcccccCCCceee
Confidence 55677899999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred ccCccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhH
Q 008638 162 PVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTV 241 (558)
Q Consensus 162 pVG~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~ 241 (558)
|||+++||||+|++|+|||++||+....+.|||.++|.+.+.....|+|+||||++|+|+|+.||+|+|+|||+|+|||+
T Consensus 127 pVG~~tLGRI~NViGePiDerGpi~s~~~~~IHaeaP~f~e~s~~~eIl~TGIKVvDLLAPYakGGKIGLFGGAGVGKTV 206 (521)
T KOG1350|consen 127 PVGPETLGRIMNVIGEPIDERGPIKSKKYSPIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV 206 (521)
T ss_pred ecCHHHHhhHHHhcCCcccccCCcccccccccccCChhHhhhcccHHHHhhcceeeeeecccccCCeeeeeccCCcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHH
Q 008638 242 LIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEH 321 (558)
Q Consensus 242 L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEy 321 (558)
|+|++|||++|+|++++||+++|||+||++|+|+||+|+|++++.++ .+|.++|++|||+||++|.|+++||+|+|||
T Consensus 207 lImELINNiAKaHGGySVF~GvGERTREGNDLY~EM~E~gVI~l~~~--~SKvaLV~GQMNePPGARaRV~LTgLTvAEY 284 (521)
T KOG1350|consen 207 LIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLEGE--TSKVALVYGQMNEPPGARARVALTGLTVAEY 284 (521)
T ss_pred eHHHHHHHHHHhcCCeEEeeccccccccccHHHHHHHhcCeeeccCC--cceEEEEeeccCCCCCceeeeeeecccHHHH
Confidence 99999999999999999999999999999999999999999997653 3799999999999999999999999999999
Q ss_pred hHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCCCCchh
Q 008638 322 FRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAP 401 (558)
Q Consensus 322 fRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~dpip 401 (558)
|||++|+|||||+||||||+||.+|+|.+|||+||++||||+|.++++.++||++++++||||++|+||||+||++||.|
T Consensus 285 FRD~egQDVLLFIDNIFRFtQAGSEVSALLGRiPSAVGYQPTLaTdMG~mQERITtTkkGSiTSvQAvYVPADDLtDPaP 364 (521)
T KOG1350|consen 285 FRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAVYVPADDLTDPAP 364 (521)
T ss_pred hhccccceEEEeehhhhhhhccchHHHHHhccCccccccCcccccchhhhhHhhhccccCceeEEEEEEeehhccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCChhHHH
Q 008638 402 ATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKL 481 (558)
Q Consensus 402 ~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~~~~ 481 (558)
.++|+|||++.||||.+++.|||||||||.|.||+|+|.++|++||++|+.++++|+.||+|||||+|+|+|+|||+||+
T Consensus 365 attFaHLDAttVLSR~iaelgIYPAVDPLDStSrimdp~ivG~eHY~vA~~Vqk~LQ~YKsLQDIIAILGmDELSEeDkL 444 (521)
T KOG1350|consen 365 ATTFAHLDATTVLSRGIAELGIYPAVDPLDSTSRIMDPNIVGEEHYNVARGVQKTLQDYKSLQDIIAILGMDELSEEDKL 444 (521)
T ss_pred cceeeccchhhhhhhhhHhcCCccccCCccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCccccccccCHHHHHHHHHHHHHHhc
Q 008638 482 TVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIAKESA 557 (558)
Q Consensus 482 ~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~f~~~g~~~~~~~k~~~~~~~~~ 557 (558)
+++|+|+|++||+|||.++|+|||.|||+|+|+|||++|++|++|+||++||++|||+|+|+|+.+||+++++|++
T Consensus 445 TV~RARKiqRFLSQPF~VAEvFTG~~GklV~l~~ti~gF~~iL~Ge~D~lPE~AFYmvG~iee~~~KA~~la~e~~ 520 (521)
T KOG1350|consen 445 TVARARKIQRFLSQPFQVAEVFTGHPGKLVPLEETIRGFKAILEGEYDHLPEQAFYMVGGIEEVVAKAEKLAKEAS 520 (521)
T ss_pred hHHHHHHHHHHHcCchhhhhhhcCCCCceecHHHHHHHHHHHhcCcccCCchhheeeecCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999875
No 3
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=100.00 E-value=8.5e-127 Score=1022.36 Aligned_cols=448 Identities=52% Similarity=0.900 Sum_probs=434.8
Q ss_pred eeEEEEECCeEEEEeCCCCchhhhceEEeccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceeccCccc
Q 008638 88 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVT 167 (558)
Q Consensus 88 G~V~~V~G~VVdv~F~~gLp~i~~~Lev~~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpVG~~l 167 (558)
|+|++|+|+||||+|++.+|++++.|++.. ..++++||+++++++.|++++|++++||++|+.|..||++++||||+++
T Consensus 1 G~i~~i~g~vvdv~f~~~~p~i~~~l~~~~-~~~~~~EVv~~l~~~~v~l~~l~~t~Gi~~G~~V~~tg~~~~VpVg~~l 79 (449)
T TIGR03305 1 GHVVAVRGSIVDVRFDGELPAIHSVLRAGR-EGEVVVEVLSQLDAHHVRGIALTPTQGLARGMPVRDSGGPLKAPVGKPT 79 (449)
T ss_pred CeEEEEEcCEEEEEeCCCCcchhheEEecC-CCcEEEeeeeEecCCeEEEEEccCcccCCCCCEEEecCCceEEEcChhh
Confidence 899999999999999878999999999875 3478899999999999999999999999999999999999999999999
Q ss_pred cceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHHHHHHH
Q 008638 168 LGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 168 LGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
||||+|++|+|||+++++...++|||++++|++++|.+++++|+||||+||+|+|||||||+||||++|+|||+|+++++
T Consensus 80 LGRVlD~~G~PiD~~~~~~~~~~~~i~~~ap~~~~R~~i~e~L~TGIr~ID~l~pigkGQr~~Ifg~~G~GKt~l~~~~~ 159 (449)
T TIGR03305 80 LSRMFDVFGNTIDRREPPKDVEWRSVHQAPPTLTRRSSKSEVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTEMI 159 (449)
T ss_pred cCCEEccCccccCCCCCCCCccccchhcCCCCchhcccCCcccccCceeeccccccccCCEEEeecCCCCChhHHHHHHH
Confidence 99999999999999988877778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCC
Q 008638 248 NNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEG 327 (558)
Q Consensus 248 ~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G 327 (558)
+|++++|.+++||++||||+||++|++++|.+.+++ +||++|++|+|+||++|++++|+|+|+||||||++|
T Consensus 160 ~~~~~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l--------~rtvvv~~ts~~~~~~r~~~~~~a~tiAEyfrd~~G 231 (449)
T TIGR03305 160 HNMVGQHQGVSIFCGIGERCREGEELYREMKEAGVL--------DNTVMVFGQMNEPPGARFRVGHTALTMAEYFRDDEK 231 (449)
T ss_pred HHHHhcCCCEEEEEEeccCcHHHHHHHHHHhhcccc--------ceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 998777779999999999999999999999886644 599999999999999999999999999999999889
Q ss_pred CcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCCCCchhhhHhhh
Q 008638 328 QDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAH 407 (558)
Q Consensus 328 ~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~dpip~~~~~i 407 (558)
+||||++||+||||+|+||||+++||||+++||||++|+.|++|+|||++.++||||+|++|++|+||++||||+++++|
T Consensus 232 ~~VLl~~DslTR~A~A~REisl~~ge~P~~~GYP~~vfs~l~~L~ERag~~~~GSIT~i~~V~~~~dD~~dPi~d~~~si 311 (449)
T TIGR03305 232 QDVLLLIDNIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAELEERIATTSDGAITSIQAVYVPADDFTDPAAVHTFSH 311 (449)
T ss_pred CceEEEecChHHHHHHHHHHHHHcCCCCCccCcCchHHHHhHHHHHhhcCCCCcCeeEEEEEEccCCCCCCchhHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 008638 408 LDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARAR 487 (558)
Q Consensus 408 lDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~~~~~v~~~~ 487 (558)
+||||||||+||++||||||||+.|+||++++.+++++|++++.++|++|++|+|++++++++|++++++++++++++++
T Consensus 312 lDG~IvLsr~La~~g~yPAIDvl~S~SR~~~~~i~~~~h~~~a~~~~~~l~~y~e~~~li~~~g~~~l~~~~~~~i~~~~ 391 (449)
T TIGR03305 312 LSASLVLSRKRASEGLYPAIDPLQSTSKMATPGIVGERHYDLAREVRQTLAQYEELKDIIAMLGLEQLSREDRRVVNRAR 391 (449)
T ss_pred cceEEEEcHHHHhCCCCCccCCCcchhhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCccccccccCHHH
Q 008638 488 KIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEE 544 (558)
Q Consensus 488 ~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~f~~~g~~~~ 544 (558)
+|++||+|+++++|.||+.+|+||+++||++++.+|++|+||++||..|||+|+|+|
T Consensus 392 ~i~~fL~Q~~~~~e~~t~~~g~~v~l~~tl~~~~~il~g~~~~~~~~~~~~~g~~~~ 448 (449)
T TIGR03305 392 RLERFLTQPFFTTEQFTGMKGKTVSLEDALDGCERILNDEFQDYPERDLYMIGKIDE 448 (449)
T ss_pred HHHHHhCCCCcccccccCCCCceeEHHHHHHHHHHHhcCCcccCCHHHhhcccCccc
Confidence 999999999999999999999999999999999999999999999999999999987
No 4
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=100.00 E-value=5.3e-124 Score=1006.17 Aligned_cols=471 Identities=69% Similarity=1.061 Sum_probs=446.1
Q ss_pred CCceeeEEEEECCeEEEEeCC-CCchhhhceEEeccC--c---eeEEeeeeecCCceEEEEEeccccCcccCceEEecCC
Q 008638 84 KGAIGQVCQVIGAVVDVRFDE-GLPPILTALEVVDHS--V---RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGS 157 (558)
Q Consensus 84 ~~~~G~V~~V~G~VVdv~F~~-gLp~i~~~Lev~~~~--~---~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~ 157 (558)
+...|+|++|+|.+++|.|++ .+|++.+.+++...+ . .+.+||+++.+++.+++|+|++++||+.|++|..||+
T Consensus 13 ~~~~G~V~~v~G~viev~~~~~~iP~ig~~~~i~~~~~~~~~~~~~~EVvg~~~~~~v~~~~l~~~~gi~~G~~V~~tg~ 92 (494)
T CHL00060 13 EKNLGRITQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGA 92 (494)
T ss_pred cccceEEEEEEccEEEEEecCCCcCCcCCEEEEccCCCCCccceEEEEEEEEeCCCeEEEEeccCccCCCCCCEEEeCCC
Confidence 455799999999999999984 588887777773312 1 4788999999989999999999999999999999999
Q ss_pred CceeccCccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCC
Q 008638 158 PITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGV 237 (558)
Q Consensus 158 ~~~VpVG~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~ 237 (558)
+++||||+++||||+|++|+|||+++++...++|||++++|++++|.++++||+||||+||+|+|||||||+||||++|+
T Consensus 93 ~~~vpvg~~lLGRVid~~G~piDg~~~~~~~~~~pi~~~~p~~~~R~~i~e~L~TGIraID~l~pigkGQR~gIfgg~Gv 172 (494)
T CHL00060 93 PLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGV 172 (494)
T ss_pred cceeecchhhcCCEEeecCcccCCCCCCCCCccccccCCCcCchhcccccceeecCceeeeccCCcccCCEEeeecCCCC
Confidence 99999999999999999999999998887777899999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHH
Q 008638 238 GKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLT 317 (558)
Q Consensus 238 GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~t 317 (558)
|||+|+.++++|++++|+++|||++||||+||+.|||+++.+.++++... ..++|+++|++|+|+||++|++++|+|+|
T Consensus 173 GKs~L~~~~~~~~~~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~-~~~~rsvvv~atsd~p~~~R~~a~~~A~t 251 (494)
T CHL00060 173 GKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQN-IAESKVALVYGQMNEPPGARMRVGLTALT 251 (494)
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEEeccCchHHHHHHHHHHhcCccccCc-ccccceEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999999999988888899999999999999999999999988765321 12579999999999999999999999999
Q ss_pred HHHHhHHhCCC-cEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCC
Q 008638 318 VAEHFRDAEGQ-DVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDL 396 (558)
Q Consensus 318 iAEyfRd~~G~-dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~ 396 (558)
+|||||| +|+ ||||++||+||||+|+||||+++||||+++||||++|+.|++|+|||++..+||||+||+|++|+||+
T Consensus 252 iAEyfrd-~g~~~VLll~DslTR~A~A~REIsl~~gepP~~~GYPpsvfs~l~~LlERaG~~~~GSITai~tVl~~gdD~ 330 (494)
T CHL00060 252 MAEYFRD-VNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDL 330 (494)
T ss_pred HHHHHHH-cCCCCEEEEcccchHHHHHHHHHHHhcCCCCCCCCcCCCHHHHhHHHHHhccCCCCCCeeEEEEEECCCCCC
Confidence 9999999 565 99999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred CCchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCC
Q 008638 397 TDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELS 476 (558)
Q Consensus 397 ~dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~ 476 (558)
+||||+++++||||||||||+||++||||||||+.|+||++.+.+++++|++++.++|++|++|+|++++++++|+++++
T Consensus 331 tdPI~d~~~silDGhIvLsr~La~~G~yPAIDvl~SvSR~~~~~~v~~~h~~~a~~~r~~la~y~e~e~li~~~g~~~ls 410 (494)
T CHL00060 331 TDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELS 410 (494)
T ss_pred CCcchHhhhhhcceEEEEcHHHHhCCCCCCcCCccchhhhcccccCCHHHHHHHHHHHHHHHHhHHHHHHHHHhCcccCC
Confidence 99999999999999999999999999999999999999997789999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCccccccccCHHHHHHHHHHHHHHh
Q 008638 477 EDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIAKES 556 (558)
Q Consensus 477 ~~~~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~f~~~g~~~~~~~k~~~~~~~~ 556 (558)
++++.+++++++|++||+|++|++|.|||.+++++++++++..+..|++|+||++||+.|||+|+++|+.+|+..++.|.
T Consensus 411 ~~~~~~i~~~~~i~~fL~Q~~f~~e~ft~~~~~~~~~~~~~~~l~~i~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 490 (494)
T CHL00060 411 EEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAANLEVES 490 (494)
T ss_pred HHHHHHHHhHHHHHHHhcCCcchhhcccCCCCcccCHHHHHHHHHHHhCCCccCCCHHHhhccCcHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888775
No 5
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=100.00 E-value=5.9e-123 Score=992.30 Aligned_cols=456 Identities=76% Similarity=1.168 Sum_probs=436.1
Q ss_pred eeeEEEEECCeEEEEeCC-CCchhhhceEEec-cCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceeccC
Q 008638 87 IGQVCQVIGAVVDVRFDE-GLPPILTALEVVD-HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (558)
Q Consensus 87 ~G~V~~V~G~VVdv~F~~-gLp~i~~~Lev~~-~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpVG 164 (558)
+|+|++|+|.++++.|+. .++.+.++|++.. .+..+.+||+.+++++.|++++|+++.||+.|+.|..|+++++||||
T Consensus 2 ~G~v~~v~g~~ie~~~~~~~ig~~~~~l~i~~~~~~~~~~eVv~~~~~~~v~l~~l~~~~gi~~G~~V~~t~~~~~i~vg 81 (461)
T TIGR01039 2 KGKVVQVIGPVVDVEFEQGELPRIYNALKVQNRAESELTLEVAQHLGDDTVRTIAMGSTDGLVRGLEVIDTGAPISVPVG 81 (461)
T ss_pred ccEEEEEEeeEEEEEECCCCCcchheEEEEecCCCceEEEEeeeeeCCCeEEEEEccCcccCCCCCEEEeCCCceEEEcC
Confidence 599999999999999984 5777777777733 22148889999999999999999999999999999999999999999
Q ss_pred ccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHHHH
Q 008638 165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM 244 (558)
Q Consensus 165 ~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~~ 244 (558)
+++||||+|++|+|||+++++....+|||+.++|++++|.+++++|+||||+||+|+|||||||+||||++|+|||+|++
T Consensus 82 ~~lLGRViD~~G~pid~~~~~~~~~~~pi~~~~p~~~~R~~~~e~l~TGiraID~l~pig~GQr~~If~~~G~GKt~L~~ 161 (461)
T TIGR01039 82 KETLGRIFNVLGEPIDEKGPIPAKERWPIHRKAPSFEEQSTKVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQ 161 (461)
T ss_pred hhhcCCEEccCCcccCCCCCCCCCcccccccCCCChhHcCCcccccccCceeecccCCcccCCEEEeecCCCCChHHHHH
Confidence 99999999999999999988777778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHH
Q 008638 245 ELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD 324 (558)
Q Consensus 245 ~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd 324 (558)
++++|+++.|++++||++||||+||+.||++++.+.++ ++||++|++|+|+||.+|++++|+|+|+||||||
T Consensus 162 ~~~~~~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~--------l~rtvvV~atsd~p~~~R~~a~~~a~tiAEyfrd 233 (461)
T TIGR01039 162 ELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGV--------IDKTALVYGQMNEPPGARMRVALTGLTMAEYFRD 233 (461)
T ss_pred HHHHHHHhcCCCeEEEEEecCCchHHHHHHHHHHhcCC--------cceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999987778899999999999999999999977654 4699999999999999999999999999999999
Q ss_pred hCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCCCCchhhhH
Q 008638 325 AEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATT 404 (558)
Q Consensus 325 ~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~dpip~~~ 404 (558)
++|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||+++.++||||+|++|++|+||++||||+++
T Consensus 234 ~~G~~VLll~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~L~ERag~~~~GSITai~tVl~~gdD~~dPi~d~~ 313 (461)
T TIGR01039 234 EQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERITSTKTGSITSVQAVYVPADDLTDPAPATT 313 (461)
T ss_pred hcCCeeEEEecchhHHHHHHHHHHHhcCCCCCCCCcCCcHHHHHHHHHHhcCCCCCCceeEEEEEEccCCCCCCccHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCChhHHHHHH
Q 008638 405 FAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVA 484 (558)
Q Consensus 405 ~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~~~~~v~ 484 (558)
++||||||||||+||++||||||||+.|+||+|++.+++++|++++.++|++|++|+|++++++++|+++++++++.+++
T Consensus 314 ~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~~~~~h~~~a~~~r~~la~y~e~~~li~i~g~~~lsd~~~~~l~ 393 (461)
T TIGR01039 314 FAHLDATTVLSRKIAELGIYPAVDPLDSTSRLLDPSVVGEEHYDVARGVQQILQRYKELQDIIAILGMDELSEEDKLTVE 393 (461)
T ss_pred HHhcceEEEECHHHHhCCCCCCcCCccccccccCCccCCHHHHHHHHHHHHHHHhhhHHHHHHHHhCCccCCHHHHHHHH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCccccccccCHHHHHHHHH
Q 008638 485 RARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAE 550 (558)
Q Consensus 485 ~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~f~~~g~~~~~~~k~~ 550 (558)
++++|++||+|+++++|.||+.++++++++|+++.+.+|++|+||++||+.|||+|+++|+.+|..
T Consensus 394 ~~~~i~~fL~Q~~~~~~~~t~~~~~~~~~~~~~~~l~~i~~g~~~~~~~~~~~~~g~~~~~~~~~~ 459 (461)
T TIGR01039 394 RARRIQRFLSQPFFVAEVFTGQPGKYVPLKDTIRGFKEILEGKYDHLPEQAFYMVGTIEEVVEKAK 459 (461)
T ss_pred hHHHHHHHhCCCCchhccccCCCCcccCHHHHHHHHHHHhCCCccCCCHHHHhccCcHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999998854
No 6
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=100.00 E-value=7.6e-123 Score=994.04 Aligned_cols=459 Identities=77% Similarity=1.173 Sum_probs=437.2
Q ss_pred ceeeEEEEECCeEEEEeCCC-CchhhhceEEe-ccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceecc
Q 008638 86 AIGQVCQVIGAVVDVRFDEG-LPPILTALEVV-DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (558)
Q Consensus 86 ~~G~V~~V~G~VVdv~F~~g-Lp~i~~~Lev~-~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpV 163 (558)
+.|+|++|.|++|++.++.. +|.+.....+. ..+..+.+||+.+++++.+.+++++++.||++|+.|..||++++|||
T Consensus 2 ~~G~V~~i~g~~v~~~~~~~~~~~ige~~~i~~~~~~~~~~EVv~~~~~~~~~~~~~~~~~gi~~G~~V~~tg~~~~v~v 81 (463)
T PRK09280 2 NTGKIVQVIGPVVDVEFPRGELPKIYNALEVEKGDGKKLVLEVAQHLGDGVVRTIAMGSTDGLVRGMEVIDTGAPISVPV 81 (463)
T ss_pred CccEEEEEEccEEEEEeCCCCCccccCEEEEEeCCCCeEEEEeeEEecCCeEEEEEecCccCCCCCCEEEeCCCceEEEc
Confidence 57999999999999998753 55665545552 22346889999999999999999999999999999999999999999
Q ss_pred CccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHHH
Q 008638 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243 (558)
Q Consensus 164 G~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~ 243 (558)
|+++||||+|++|+|||+.+++...++|||+.++|++++|.++++||.||||+||+|+|||||||+||||++|+|||+|+
T Consensus 82 g~~lLGRViD~~G~pld~~~~~~~~~~~pi~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGQR~gIfa~~GvGKt~Ll 161 (463)
T PRK09280 82 GKATLGRIFNVLGEPIDEKGPIGAEERWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLI 161 (463)
T ss_pred ChhhcCCEEeeeccccCCCCCcCccceecccCCCCChHHhCCccceeccCCeeecccCCcccCCEEEeecCCCCChhHHH
Confidence 99999999999999999998887778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhH
Q 008638 244 MELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR 323 (558)
Q Consensus 244 ~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfR 323 (558)
+++++|+++.+++++||++||||+||+.||++++.+.+. ++||++|++|+|+||.+|++++|+|+|+|||||
T Consensus 162 ~~i~~~~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~--------l~rsvvV~atsd~p~~~r~~a~~~a~tiAEyfr 233 (463)
T PRK09280 162 QELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGV--------LDKTALVFGQMNEPPGARLRVALTGLTMAEYFR 233 (463)
T ss_pred HHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCC--------cceeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999987777899999999999999999999987653 469999999999999999999999999999999
Q ss_pred HhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCCCCchhhh
Q 008638 324 DAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPAT 403 (558)
Q Consensus 324 d~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~dpip~~ 403 (558)
|++|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||+++.++||||+|+||++|+||++||||++
T Consensus 234 d~~G~~VLll~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~L~ERag~~~~GSITai~tVl~~gdD~~dPI~d~ 313 (463)
T PRK09280 234 DVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSITSVQAVYVPADDLTDPAPAT 313 (463)
T ss_pred HhcCCceEEEecchHHHHHHHHHHHHhcCCCCcccCcCchHHHHHHHHHHHhcCCCCCceeEEEEEECcCCCCCCcchHh
Confidence 97899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCChhHHHHH
Q 008638 404 TFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTV 483 (558)
Q Consensus 404 ~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~~~~~v 483 (558)
+++||||||+|||+||++||||||||+.|+||+|++.+++++|+++++++|++|++|+|++++++++||+++++.+++++
T Consensus 314 ~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~~~~~~~~~a~~~r~~la~y~e~e~li~i~gy~~~sd~~d~ai 393 (463)
T PRK09280 314 TFAHLDATTVLSRQIAELGIYPAVDPLDSTSRILDPLIVGEEHYDVAREVQQILQRYKELQDIIAILGMDELSEEDKLTV 393 (463)
T ss_pred hhhhcceEEEEcHHHHhCCCCCccCCccccccccccccCCHHHHHHHHHHHHHHHHhHHHHHHHHhhCCccCCHHHHHHH
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCccccccccCHHHHHHHHHHH
Q 008638 484 ARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKI 552 (558)
Q Consensus 484 ~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~f~~~g~~~~~~~k~~~~ 552 (558)
+++++|++||+|+++++|.||+.++++++++|+++.+.+|++|+||++||.+|||+|+++|+.+|++++
T Consensus 394 ~~~~~i~~fL~Q~~~~~~~ft~~~~~~~~~~~~~~~l~~i~~g~~~~~~~~~~~~~g~~~~~~~~~~~~ 462 (463)
T PRK09280 394 ARARKIQRFLSQPFFVAEQFTGSPGKYVPLKDTIRGFKEILEGEYDHLPEQAFYMVGTIEEAIEKAKKL 462 (463)
T ss_pred HhhHHHHHhccCCcchhhcccCCCCcccCHHHHHHHHHHHhCCCccCCCHHHHhccCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999997664
No 7
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=100.00 E-value=3.8e-122 Score=991.04 Aligned_cols=457 Identities=60% Similarity=0.981 Sum_probs=433.0
Q ss_pred ceeeEEEEECCeEEEEeCCC-CchhhhceEEeccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceeccC
Q 008638 86 AIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (558)
Q Consensus 86 ~~G~V~~V~G~VVdv~F~~g-Lp~i~~~Lev~~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpVG 164 (558)
+.|+|++|.|+++++.+..+ ++.+.....+...+....+||+++++++.+++++++++.||++|+.|..||++++||||
T Consensus 2 ~~G~V~~i~g~vi~v~g~~~~~~~ige~~~i~~~~~~~~~eVv~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg 81 (461)
T PRK12597 2 MIGRIIKIRGDVVDVEFEEGALPPINQALTVHDDGGPTLLEVKQHLDETTVRAIALGSTSGLARGDEVRNTGGPIEVPVG 81 (461)
T ss_pred CccEEEEEECcEEEEEECCCCCcCccCEEEEecCCCcEEEEEEEEcCCCeEEEEEecCccCCCCCCEEEeCCCceEEEcC
Confidence 46999999999999997643 34444334443322357889999999999999999999999999999999999999999
Q ss_pred ccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHHHH
Q 008638 165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM 244 (558)
Q Consensus 165 ~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~~ 244 (558)
+++||||+|++|+|||+.+++....+||++.++|++++|.++++||+||||+||+|+|||||||+||||++|+|||+|+.
T Consensus 82 ~~llGRVid~~G~plD~~~~~~~~~~~~i~~~~p~~~~R~~~~e~l~TGir~ID~l~pigkGQR~gIfa~~G~GKt~Ll~ 161 (461)
T PRK12597 82 EAVLGRLLDVLGEPLDGGPPLPAEERRPIHSTIPPLAEQDTSTEILETGIKVIDLLCPIAKGGKTGLFGGAGVGKTVLMM 161 (461)
T ss_pred hhhcCCEEeeccccccCCCCCCCcceeeccCCCcChhhcCCcCcceecCCeeecccCccccCCEEEeecCCCCChhHHHH
Confidence 99999999999999999988877788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHH
Q 008638 245 ELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD 324 (558)
Q Consensus 245 ~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd 324 (558)
++++|++++|.+++||++||||+||+.||++++.+.+. ++||++|++|+|+||.+|++++|+|+|+||||||
T Consensus 162 ~~~~~~~~~~~dv~V~~liGER~rEv~ef~~~~~~~~~--------l~rsvvv~atsd~~~~~R~~a~~~a~tiAEyfrd 233 (461)
T PRK12597 162 ELIFNISKQHSGSSVFAGVGERSREGHELYHEMKESGV--------LDKTVMVYGQMNEPPGARMRVVLTGLTIAEYLRD 233 (461)
T ss_pred HHHHHHHhhCCCEEEEEcCCcchHHHHHHHHHHHhcCC--------cceeEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888999999999999999999999987654 4599999999999999999999999999999999
Q ss_pred hCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCCCCchhhhH
Q 008638 325 AEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATT 404 (558)
Q Consensus 325 ~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~dpip~~~ 404 (558)
++|+||||++||+||||+|+||||+++||||+++||||++|++|++|+||+++.++||||+|+||++|+||++||||+++
T Consensus 234 ~~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~l~ERag~~~~GSIT~i~tVl~~~dD~~dPI~d~~ 313 (461)
T PRK12597 234 EEKEDVLLFIDNIFRFVQAGSEVSGLLGRMPSRVGYQPTLASEVAELQERIASTKNGSITSIQAVYVPADDLTDPAAVAI 313 (461)
T ss_pred hcCCceEEEeccchHHHHHHHHHHHhcCCCCCcCCcCchhHHHHHHHHHhhcCCCCccccEEEEEEecCCCCCCccHHHH
Confidence 55999999999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred hhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCChhHHHHHH
Q 008638 405 FAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVA 484 (558)
Q Consensus 405 ~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~~~~~v~ 484 (558)
++||||||||||+||++||||||||+.|+||++++.+++++|+++++++|++|++|+|++++++++||++++++++.+++
T Consensus 314 ~~ilDG~IvLsr~La~~g~yPAIDvl~S~SR~~~~~i~~~~h~~~a~~~r~~la~y~e~e~li~i~gy~~l~~~~d~~i~ 393 (461)
T PRK12597 314 FSHLDSTVVLSRAQAAKGIYPAIDPLASSSNLLDPLVVGERHYDAAIEVKRILQRYKELEDVIAILGIDELSAEDKIIVK 393 (461)
T ss_pred HhhcceEEEEcHHHHhCCCCCccCCccccccccccccCCHHHHHHHHHHHHHHHhhhhHHHHHHHcCCccCCHHHHHHHH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999889999999999
Q ss_pred HHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCccccccccCHHHHHHHHH
Q 008638 485 RARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAE 550 (558)
Q Consensus 485 ~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~f~~~g~~~~~~~k~~ 550 (558)
++++|++||+|+++++|.|||.|+++++++|+++.+.+|++|+||++||++|||+|+++|+.+|++
T Consensus 394 ~~~~i~~fL~Q~~~~~~~~t~~~~~~~~~~~~~~~l~~i~~g~~~~~~~~~~~~~g~~~~~~~~~~ 459 (461)
T PRK12597 394 RARQLQRFLTQPFFVTEAFTGEPGVSVPLEETLDSCERILNGEYDDWSEESFYMIGSLDDLRTKEE 459 (461)
T ss_pred hHHHHHHHhCCCcchhhcccCCCCcccCHHHHHHHHHHHhCCCccCCCHHHHhccCcHHHHHhHhh
Confidence 999999999999999999999999999999999999999999999999999999999999988764
No 8
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=100.00 E-value=1.3e-108 Score=888.33 Aligned_cols=423 Identities=26% Similarity=0.408 Sum_probs=389.3
Q ss_pred CceeeEEEEECCeEEEEeCCCCchh-hhceEEeccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceecc
Q 008638 85 GAIGQVCQVIGAVVDVRFDEGLPPI-LTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (558)
Q Consensus 85 ~~~G~V~~V~G~VVdv~F~~gLp~i-~~~Lev~~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpV 163 (558)
..+|+|++|.|+++.+. |+|++ ++++.... + ....||+. ++++.+.+++|+++.||+.|+.|..||++++|||
T Consensus 26 ~~~G~V~~v~g~ii~v~---gl~~~~~gEl~~i~-~-~~~g~Vi~-l~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpv 99 (497)
T TIGR03324 26 QEVGTVESVSTGIARVH---GLPGVGFEELLRFP-G-GLLGIAFN-VDEDEVGVVLLGEYSHLQAGDEVERTGRVMDVPV 99 (497)
T ss_pred eEEEEEEEEeceEEEEE---ccCCCCcCCEEEEC-C-CcEEEEEE-EcCCeEEEEEecCCcCCcCCCEEEECCCCCeEEC
Confidence 45799999999999997 75544 33333332 2 35566665 4888899999999999999999999999999999
Q ss_pred CccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHHH
Q 008638 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243 (558)
Q Consensus 164 G~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~ 243 (558)
|+++||||+|++|+|||+++++...++|||++++|++++|.++++||+||||+||+|+|||||||+||||++|||||+|+
T Consensus 100 g~~llGRVvd~lG~PiDg~~~~~~~~~~~i~~~~p~~~~R~~v~epl~TGI~aID~l~pigrGQR~~Ifg~~g~GKT~La 179 (497)
T TIGR03324 100 GDGLLGRVVDPLGRPLDGGGPLASSPRLPIERPAPPIMDRAPVTVPLQTGLKVIDALIPIGRGQRELILGDRQTGKTAIA 179 (497)
T ss_pred CHhhCcCEECCCCCCcCCCCCCCCCceeehhccCcCccccCCCCchhhcCCEEEeccCCcccCCEEEeecCCCCCHHHHH
Confidence 99999999999999999999988888899999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhH
Q 008638 244 MELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR 323 (558)
Q Consensus 244 ~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfR 323 (558)
.++|.|++. .+.+|||++||||+||+.+++++|.+.+. ++||++|++|+|+||.+|++++|+|||||||||
T Consensus 180 l~~I~~q~~-~dv~~V~~~IGeR~rev~e~i~~l~~~~~--------l~~tvvV~atsd~p~~~r~~ap~~a~aiAEyfr 250 (497)
T TIGR03324 180 IDTILNQKG-RNVLCIYCAIGQRASAVAKVVANLREHGA--------MDYTIVVVTEGNDPPGLQYIAPYAATSIGEHFM 250 (497)
T ss_pred HHHHHHhcC-CCcEEEEEEeccCcHHHHHHHHHhhhcCC--------cceeEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 888888753 33359999999999999999999988764 459999999999999999999999999999999
Q ss_pred HhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcC--C--CCCceeeEEEEeecCCCCCCc
Q 008638 324 DAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT--T--KKGSITSVQAIYVPADDLTDP 399 (558)
Q Consensus 324 d~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~--~--~~GSIT~i~~V~v~~dD~~dp 399 (558)
| +|+||||+|||+||||+|+||||+++||||+++||||++|+.|++|+|||++ . ++||||+||+|++++||++||
T Consensus 251 d-~G~~VLlv~DdlTr~A~A~REisL~lgepPgr~gYPg~vF~~~srLlERag~~~~~~~~GSITal~~V~~~~dD~s~p 329 (497)
T TIGR03324 251 E-QGRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLNEELGGGSLTALPIIETEAQNISAY 329 (497)
T ss_pred h-CCCCEEEEEcChhHHHHHHHHHHhhccCCCccCcCCccHHHHhHHHHHhhhhccCCCCCcceeEEEEEEcCCCCCCCc
Confidence 9 8999999999999999999999999999999999999999999999999997 3 589999999999999999999
Q ss_pred hhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCChhH
Q 008638 400 APATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDD 479 (558)
Q Consensus 400 ip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~~ 479 (558)
||+++++|+||||||||+||++||||||||+.|+||++. ....++|++++..+|+.|++|+|+++++++ |.+ +++++
T Consensus 330 I~d~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRv~~-~~~~~~~~~~a~~lr~~la~y~e~e~~~~~-G~~-ld~~~ 406 (497)
T TIGR03324 330 IPTNLISITDGQIYLSPTLFELGVLPAVDVGKSVSRVGG-KAQLAAYRAVAGDLKLAYAQFEELETFARF-GAR-LDENT 406 (497)
T ss_pred chHhheeccceEEEEcHHHHhCCCCCcCCCccccccCCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHh-hhh-cCHHH
Confidence 999999999999999999999999999999999999985 456799999999999999999999999876 533 89999
Q ss_pred HHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCcccc
Q 008638 480 KLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSF 536 (558)
Q Consensus 480 ~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~f 536 (558)
+.+++++++|++||+|+++. ++++++++..++++.+|.+|++|++..
T Consensus 407 ~~~i~~~~~i~~fL~Q~~~~----------~~~~~~~~~~l~~~~~g~~d~~~~~~v 453 (497)
T TIGR03324 407 RKTIEHGRRIRACLKQTQSS----------PLTVPQQIAILLALTNGLFDGVDLDAM 453 (497)
T ss_pred HHHHHhHHHHHHHhCCCCCC----------CCCHHHHHHHHHHHhcCCCCCCCHHHH
Confidence 99999999999999999887 899999999999999999999999553
No 9
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=100.00 E-value=2.9e-107 Score=880.85 Aligned_cols=422 Identities=27% Similarity=0.408 Sum_probs=389.3
Q ss_pred CceeeEEEEECCeEEEEeCCCCchh-hhceEEeccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceecc
Q 008638 85 GAIGQVCQVIGAVVDVRFDEGLPPI-LTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (558)
Q Consensus 85 ~~~G~V~~V~G~VVdv~F~~gLp~i-~~~Lev~~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpV 163 (558)
..+|+|++|.|+++.|. |+|++ ++++.... + .... .+.+++++.|.+++|++++||+.|+.|..||++++|||
T Consensus 26 ~~~G~V~~v~g~i~~v~---gl~~~~~ge~~~i~-~-~~~g-~V~~l~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpv 99 (502)
T PRK13343 26 REIGRVESVGDGIAFVS---GLPDAALDELLRFE-G-GSRG-FAFNLEEELVGAVLLDDTADILAGTEVRRTGRVLEVPV 99 (502)
T ss_pred EEeeEEEEEeCCEEEEe---CCCCCCCCCEEEEC-C-CcEE-EEEEecCCeEEEEEeeCCCCCCCCCEeEecCCcceeec
Confidence 35799999999999997 86543 33333222 2 3444 44566999999999999999999999999999999999
Q ss_pred CccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHHH
Q 008638 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243 (558)
Q Consensus 164 G~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~ 243 (558)
|+++||||+|++|+|||+++++...+++|++.++|++++|.++++||+||||+||+|+|||||||+||||++|+|||+|+
T Consensus 100 g~~llGRVid~lG~piDg~~~i~~~~~~~i~~~ap~~~~R~~v~epl~TGIkaID~l~pigrGQR~~I~g~~g~GKt~La 179 (502)
T PRK13343 100 GDGLLGRVIDPLGRPLDGGGPLQATARRPLERPAPAIIERDFVTEPLQTGIKVVDALIPIGRGQRELIIGDRQTGKTAIA 179 (502)
T ss_pred CHHhcCCEECCCCCcccCCCCCCCCceecccCCCcChhhcCCCCcccccCCceeccccccccCCEEEeeCCCCCCccHHH
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhH
Q 008638 244 MELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR 323 (558)
Q Consensus 244 ~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfR 323 (558)
+++|.|++. .+.+|||++||||+||+.++++++.+.+.+ +||++|++|+|+||++|++++|+|||||||||
T Consensus 180 l~~i~~~~~-~dv~~V~~~IGer~rev~e~~~~l~~~~~l--------~~tvvV~atsd~~~~~r~~ap~~a~aiAEyfr 250 (502)
T PRK13343 180 IDAIINQKD-SDVICVYVAIGQKASAVARVIETLREHGAL--------EYTTVVVAEASDPPGLQYLAPFAGCAIAEYFR 250 (502)
T ss_pred HHHHHhhcC-CCEEEEEEEeccChHHHHHHHHHHHhcCcc--------ceeEEEEecccccHHHHHHHHHHHHHHHHHHH
Confidence 888888743 334579999999999999999999887644 59999999999999999999999999999999
Q ss_pred HhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCC----CCCceeeEEEEeecCCCCCCc
Q 008638 324 DAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT----KKGSITSVQAIYVPADDLTDP 399 (558)
Q Consensus 324 d~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~----~~GSIT~i~~V~v~~dD~~dp 399 (558)
| +|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+|||++. ++||||+||+|++++||++||
T Consensus 251 d-~G~~VLlv~DdlTr~A~A~REisL~l~epPgr~gYP~~vf~~~srLlERAg~~~~~~~gGSITal~~V~~~~dD~s~p 329 (502)
T PRK13343 251 D-QGQDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERAAKLSPELGGGSLTALPIIETLAGELSAY 329 (502)
T ss_pred h-CCCCEEEEecchHHHHHHHHHHHHhcCCCCCcCCcCcchHhhhHHHHHhhccCCCCCCCcceEEEEEEEcCCCCCCCc
Confidence 9 89999999999999999999999999999999999999999999999999975 689999999999999999999
Q ss_pred hhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCChhH
Q 008638 400 APATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDD 479 (558)
Q Consensus 400 ip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~~ 479 (558)
||+++++|+||||||||+||++||||||||+.|+||+++. .+.++|++++.++|.+|++|+|++++++++++ ++++.
T Consensus 330 I~~~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRv~~~-~~~~~~~~~a~~lr~~la~y~e~e~~~~~G~~--ld~~~ 406 (502)
T PRK13343 330 IPTNLISITDGQIYLDSDLFAAGQRPAVDVGLSVSRVGGK-AQHPAIRKESGRLRLDYAQFLELEAFTRFGGL--LDAGT 406 (502)
T ss_pred chhhhhcccceEEEECHHHHhCCCCCccCCccchhccCcc-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCHHH
Confidence 9999999999999999999999999999999999999854 46799999999999999999999999877664 89999
Q ss_pred HHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCccc
Q 008638 480 KLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQS 535 (558)
Q Consensus 480 ~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~ 535 (558)
+.+++++++|++||+|+++. ++++++++..+.++.+|.+|++|.+.
T Consensus 407 ~~~i~~~~~i~~~L~Q~~~~----------~~~~~~~~~~l~~~~~g~~~~~~~~~ 452 (502)
T PRK13343 407 QKQITRGRRLRELLKQPRFS----------PLSVEEQIALLYALNEGLLDAVPLAN 452 (502)
T ss_pred HHHHHHHHHHHHHhcCCCCC----------CCCHHHHHHHHHHHhcCCccCCCHHH
Confidence 99999999999999999888 78999999999999999999999865
No 10
>PTZ00185 ATPase alpha subunit; Provisional
Probab=100.00 E-value=8.8e-107 Score=868.97 Aligned_cols=436 Identities=22% Similarity=0.306 Sum_probs=395.5
Q ss_pred CCCCccccccccCCceeeEEEEECCeEEEEeCCCCchhhh-c-eEEeccCceeEEeeeeecCCc-eEEEEEeccccCccc
Q 008638 72 GGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILT-A-LEVVDHSVRLVLEVAQHMGEG-VVRTIAMDGTEGLVR 148 (558)
Q Consensus 72 ~~~~~~~~~~~~~~~~G~V~~V~G~VVdv~F~~gLp~i~~-~-Lev~~~~~~lv~EV~~~lg~~-~Vr~i~l~~t~GL~~ 148 (558)
+++++++..|++..++|+|++|.|.|+.|+|.+|++++.. + +++...+.....+++.+++++ .|++++|++++||+.
T Consensus 25 ~~~~~~~~~~~~~~~~G~V~~v~~gia~v~~v~Gl~~~~~gElv~f~~~~~~~~~G~vlnl~~d~~v~~v~lg~~~gI~~ 104 (574)
T PTZ00185 25 SAAPGQKSFFKATEMIGYVHSIDGTIATLIPAPGNPGVAYNTIIMIQVSPTTFAAGLVFNLEKDGRIGIILMDNITEVQS 104 (574)
T ss_pred ccCCcchhhhhhheeeEEEEEEcCeEEEEeecCCCcccccCceEEEEcCCCCeEEEEEEEecCCCeEEEEEecCccCCCC
Confidence 3456678899999999999999887999988889988743 3 333222223456777888888 699999999999999
Q ss_pred CceEEecCCCceeccCccccceEEEEeccccccc------CCCccc-ccccccCCCCcccccccccceeeeeeeEeeccc
Q 008638 149 GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEK------GDLKTE-HYLPIHREAPAFVEQATEQQILVTGIKVVDLLA 221 (558)
Q Consensus 149 G~~V~~tg~~~~VpVG~~lLGRV~d~lG~PiD~~------~~i~~~-~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~ 221 (558)
|++|..||++++||||+++||||+|++|+|||++ +++... .++||+.++|++++|.++++||+||||+||+|+
T Consensus 105 G~~V~~tg~~~~VpVG~~lLGRVvD~lG~PIDg~~~~~~~g~i~~~~~~~pIe~~ap~~~~R~~v~epL~TGIkaID~Li 184 (574)
T PTZ00185 105 GQKVMATGKLLYIPVGAGVLGKVVNPLGHEVPVGLLTRSRALLESEQTLGKVDAGAPNIVSRSPVNYNLLTGFKAVDTMI 184 (574)
T ss_pred CCEEEECCCccEEECCcccccCEECCCCcccCCCCccccCCCCCcccccccccCCCcChhhcCCCCCcCcCCceeeeccc
Confidence 9999999999999999999999999999999987 555544 477999999999999999999999999999999
Q ss_pred ccccCceeeeecCCCCChhHHHHHHHHHHHh-------hcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeE
Q 008638 222 PYQRGGKIGLFGGAGVGKTVLIMELINNVAK-------AHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKC 294 (558)
Q Consensus 222 PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~-------~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t 294 (558)
|||||||+|||||+|+|||+|++++|.||++ .+.++|||++||||.||+.+++++|.+.|++ ++|
T Consensus 185 PIGRGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL--------~~T 256 (574)
T PTZ00185 185 PIGRGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGAL--------RYT 256 (574)
T ss_pred cccCCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCc--------cce
Confidence 9999999999999999999999899888863 2458999999999999999999999988755 599
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhh
Q 008638 295 ALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQER 374 (558)
Q Consensus 295 ~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ER 374 (558)
++|++++|+||++|+++||+|||+|||||| +|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||
T Consensus 257 vVV~AtAdep~~~r~~Apy~a~tiAEYFrd-~GkdVLiv~DDLTr~A~A~REISLllgrpPgRegYPgdVF~lhsrLlER 335 (574)
T PTZ00185 257 TVMAATAAEPAGLQYLAPYSGVTMGEYFMN-RGRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLER 335 (574)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEEcCchHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHh
Confidence 999999999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred hcC----CCCCceeeEEEEeecCCCCCCchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHH
Q 008638 375 ITT----TKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTA 450 (558)
Q Consensus 375 a~~----~~~GSIT~i~~V~v~~dD~~dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a 450 (558)
|++ .++||||+||+|++|+||++||||+++++|+||||+|||+||++|+||||||+.|+||++++. ..+.|+++|
T Consensus 336 Ag~l~~~~G~GSITAlpiV~t~adDis~pIptnviSItDGqIvLsr~Lf~~GiyPAIDVl~SvSRvg~~a-q~~~~k~vA 414 (574)
T PTZ00185 336 AAMLSPGKGGGSVTALPIVETLSNDVTAYIVTNVISITDGQIYLDTKLFTGGQRPAVNIGLSVSRVGSSA-QNVAMKAVA 414 (574)
T ss_pred cccccCCCCCcceEEEEEEEccCCCCCCcchHhhhhhcCeEEEEcHHHHhCCCCCCcCCcccccccCCcc-CCHHHHHHH
Confidence 998 357999999999999999999999999999999999999999999999999999999998655 568899999
Q ss_pred HHHHHHHHccHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCC
Q 008638 451 RGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDD 530 (558)
Q Consensus 451 ~~~r~~La~y~el~~ii~i~G~~~l~~~~~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~ 530 (558)
..+|..|++|+||+.+. .+|-| |++ ..++++++|.+.|+|+. +.++++++..+.+..+|.+|+
T Consensus 415 g~lr~~LaqY~El~~fa-~fgsd-ld~---~~l~rG~r~~ellkQ~~------------p~~~~~qv~~l~a~~~g~ld~ 477 (574)
T PTZ00185 415 GKLKGILAEYRKLAADS-VGGSQ-VQT---VPMIRGARFVALFNQKN------------PSFFMNALVSLYACLNGYLDD 477 (574)
T ss_pred HHHHHHHHHHHHHHHHH-hhcch-hhH---HHHHhhHHHHHHHCCCC------------CCCHHHHHHHHHHHhcCCccc
Confidence 99999999999999985 56643 443 79999999999999975 468999999999999999999
Q ss_pred CCcc
Q 008638 531 LPEQ 534 (558)
Q Consensus 531 ~p~~ 534 (558)
+|.+
T Consensus 478 ~~~~ 481 (574)
T PTZ00185 478 VKVN 481 (574)
T ss_pred CcHH
Confidence 9874
No 11
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=100.00 E-value=3.2e-106 Score=866.68 Aligned_cols=422 Identities=23% Similarity=0.318 Sum_probs=390.0
Q ss_pred CceeeEEEEECCeEEEEeCCCC-chhhhceEEeccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceecc
Q 008638 85 GAIGQVCQVIGAVVDVRFDEGL-PPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (558)
Q Consensus 85 ~~~G~V~~V~G~VVdv~F~~gL-p~i~~~Lev~~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpV 163 (558)
..+|+|++|.|.++.|. |+ ...++++.... + ....+|+ .++++.+.+++|+++.||+.|+.|..||++++|||
T Consensus 5 ~~~G~V~~v~~~ii~v~---Gl~~~~~ge~~~i~-~-~~~g~vi-~~~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpv 78 (485)
T CHL00059 5 VNTGTVLQVGDGIARIY---GLDEVMAGELVEFE-D-GTIGIAL-NLESNNVGVVLMGDGLMIQEGSSVKATGKIAQIPV 78 (485)
T ss_pred eeeEEEEEEeccEEEEe---ccccCCcCCEEEEC-C-CCEEEEE-EEcCCEEEEEEeeCCCCCCCCCEEEECCCcceEEc
Confidence 45799999999999997 77 44445544443 2 3455555 55888999999999999999999999999999999
Q ss_pred CccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHHH
Q 008638 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243 (558)
Q Consensus 164 G~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~ 243 (558)
|+++||||+|++|+|||+++++....++||+.++|++++|.++++||+||||+||+|+|||||||+||||++|+|||+|+
T Consensus 79 g~~llGRVvd~lG~piDg~~~~~~~~~~~i~~~ap~~~~R~~v~epl~TGI~aID~l~pigrGQR~~I~g~~g~GKt~La 158 (485)
T CHL00059 79 SEAYLGRVVNALAKPIDGKGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 158 (485)
T ss_pred CHhhcCCEECCCCCeeCCCCCcCCCccccccCCCCCchhccCCCcccccCceeeccccccccCCEEEeecCCCCCHHHHH
Confidence 99999999999999999999887778899999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhH
Q 008638 244 MELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR 323 (558)
Q Consensus 244 ~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfR 323 (558)
+++|.|+++ ++.+|||++||||+||+.+|++++.+.+.+ +||++|++|+|+||.+|+++||+|||||||||
T Consensus 159 l~~I~~q~~-~dv~cV~~~IGer~rev~e~~~~l~~~~~l--------~~tvvV~atad~~~~~r~~ap~~a~aiAEyfr 229 (485)
T CHL00059 159 TDTILNQKG-QNVICVYVAIGQKASSVAQVVTTLQERGAM--------EYTIVVAETADSPATLQYLAPYTGAALAEYFM 229 (485)
T ss_pred HHHHHhccc-CCeEEEEEEecCCchHHHHHHHHhhcccch--------hceEEEEeCCCCCHHHHHHHHHHHhhHHHHHH
Confidence 889888753 345789999999999999999999887644 59999999999999999999999999999999
Q ss_pred HhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCC----CCCceeeEEEEeecCCCCCCc
Q 008638 324 DAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT----KKGSITSVQAIYVPADDLTDP 399 (558)
Q Consensus 324 d~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~----~~GSIT~i~~V~v~~dD~~dp 399 (558)
| +|+||||+|||+||||+|+||||+++||||+++||||++|+.|++|+||+++. ++||||+||+|++++||++||
T Consensus 230 ~-~G~~VLlv~DdlTr~A~A~REisl~l~epPgr~gYP~~vF~~~srLlERag~~~~~~~~GSITal~~V~~~~dD~s~p 308 (485)
T CHL00059 230 Y-RGRHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQAGDVSAY 308 (485)
T ss_pred H-cCCCEEEEEcChhHHHHHHHHHHHhcCCCCCcCCcCchHHHHhHHHHHhhhcccCCCCCcceEEEEEEEccCCCCCCc
Confidence 9 89999999999999999999999999999999999999999999999999976 589999999999999999999
Q ss_pred hhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCChhH
Q 008638 400 APATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDD 479 (558)
Q Consensus 400 ip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~~ 479 (558)
||+++++|+||||||||+||++||||||||+.|+||+++.. ..++|++++.++|+.|++|+|+++++++ + ..++++.
T Consensus 309 I~~~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRvg~~a-q~~~~~~~a~~lr~~la~y~e~e~~~~~-~-~~~d~~~ 385 (485)
T CHL00059 309 IPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAA-QIKAMKQVAGKLKLELAQFAELEAFAQF-A-SDLDKAT 385 (485)
T ss_pred chHhhhhhcceEEEEcHHHHhCCCCCCcCcccchhcCCchh-hcHHHHHHHHHHHHHHHHHHHHHHHHHh-h-cCCCHHH
Confidence 99999999999999999999999999999999999998554 5699999999999999999999999998 4 4688999
Q ss_pred HHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCccc
Q 008638 480 KLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQS 535 (558)
Q Consensus 480 ~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~ 535 (558)
+.+++++++|++||+|+.+. ++++++++..++++.+|++|++|.+.
T Consensus 386 ~~~i~~~~~i~~~L~Q~~~~----------~~~~~e~~~~l~a~~~g~l~~~~~~~ 431 (485)
T CHL00059 386 QNQLARGQRLRELLKQSQSA----------PLTVEEQVATIYTGTNGYLDSLEIGQ 431 (485)
T ss_pred HHHHHhHHHHHHHhcCCCCC----------CCCHHHHHHHHHHhccCCcCccCHHH
Confidence 99999999999999998877 88999999999999999999999854
No 12
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=6.3e-106 Score=873.79 Aligned_cols=423 Identities=24% Similarity=0.385 Sum_probs=390.7
Q ss_pred CceeeEEEEECCeEEEEeCCCC-chhhhceEEeccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceecc
Q 008638 85 GAIGQVCQVIGAVVDVRFDEGL-PPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (558)
Q Consensus 85 ~~~G~V~~V~G~VVdv~F~~gL-p~i~~~Lev~~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpV 163 (558)
..+|+|++|.|+++.++ |+ ...++++.... + +...+|+ .++++.+.+++|+++.||..|+.|..||++++|||
T Consensus 26 ~~~G~V~~v~g~~v~v~---g~~~~~~ge~~~i~-~-~~~g~Vi-~~~~~~~~~~~~~~~~gi~~g~~V~~~~~~~~v~v 99 (502)
T PRK09281 26 EEVGTVISVGDGIARVY---GLDNVMAGELLEFP-G-GVYGIAL-NLEEDNVGAVILGDYEDIKEGDTVKRTGRILEVPV 99 (502)
T ss_pred EEEEEEEEEeCCEEEEE---CccccccCCEEEEC-C-CcEEEEE-EEcCCeEEEEEecCcccccCCCeeeecCCceEEec
Confidence 35799999999999997 77 44445544433 2 3455555 55888899999999999999999999999999999
Q ss_pred CccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHHH
Q 008638 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243 (558)
Q Consensus 164 G~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~ 243 (558)
|+++||||+|++|+|||+++++...++||++.++|++++|.++++||+||||+||+|+|||||||+||||++|+|||+|+
T Consensus 100 g~~llGrv~d~~G~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~~~l~TGi~~ID~l~pigrGQr~~Ifg~~g~GKt~la 179 (502)
T PRK09281 100 GEALLGRVVNPLGQPIDGKGPIEATETRPVERKAPGVIDRKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAIA 179 (502)
T ss_pred CHHhcCCEEccCCCCcCCCCCCCCCceecccCCCcCccccCCccceeecCCeeeecccccccCcEEEeecCCCCCchHHH
Confidence 99999999999999999999888888899999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhH
Q 008638 244 MELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR 323 (558)
Q Consensus 244 ~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfR 323 (558)
+++|.|++. ++.+|||++||||+||+.+|+++|.+.+.+ +||++|++|+|+||.+|++++|+|||+|||||
T Consensus 180 l~~i~~~~~-~dv~~V~~~IGer~~ev~e~~~~~~~~~~l--------~~tvvv~atsd~p~~~r~~a~~~a~tiAEyfr 250 (502)
T PRK09281 180 IDTIINQKG-KDVICIYVAIGQKASTVAQVVRKLEEHGAM--------EYTIVVAATASDPAPLQYLAPYAGCAMGEYFM 250 (502)
T ss_pred HHHHHHhcC-CCeEEEEEEecCChHHHHHHHHHHhhcCCc--------cceEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 888888753 334589999999999999999999887644 59999999999999999999999999999999
Q ss_pred HhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCC----CCCceeeEEEEeecCCCCCCc
Q 008638 324 DAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT----KKGSITSVQAIYVPADDLTDP 399 (558)
Q Consensus 324 d~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~----~~GSIT~i~~V~v~~dD~~dp 399 (558)
| +|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||+||+|++|+||++||
T Consensus 251 d-~G~~VLli~DdlTr~A~A~REisl~~gepPgr~gyP~~vf~~~s~LlERag~~~~~~~~GSITal~~V~~~~dD~s~p 329 (502)
T PRK09281 251 D-NGKDALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSLTALPIIETQAGDVSAY 329 (502)
T ss_pred H-cCCCEEEEecCchHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhhccCCCCCccEEEEEEEECCCCCCCCc
Confidence 9 79999999999999999999999999999999999999999999999999985 689999999999999999999
Q ss_pred hhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCChhH
Q 008638 400 APATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDD 479 (558)
Q Consensus 400 ip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~~ 479 (558)
||+++++|+||||||||+||++||||||||+.|+||++++. +.++|++++.++|++|++|+|+++++++ | .++++++
T Consensus 330 I~d~~~sItDGqIvLsr~La~~G~~PAIdv~~SvSRv~~~~-~~~~~~~~a~~lr~~la~y~e~~~l~~~-g-~~l~~~~ 406 (502)
T PRK09281 330 IPTNVISITDGQIFLESDLFNAGIRPAINVGISVSRVGGAA-QIKAMKKVAGTLRLDLAQYRELEAFAQF-G-SDLDEAT 406 (502)
T ss_pred chHhhhcccceEEEEcHHHHhCCCCCccCCcccccccCCcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHH-h-cCCCHHH
Confidence 99999999999999999999999999999999999998655 4699999999999999999999999876 5 5699999
Q ss_pred HHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCcccc
Q 008638 480 KLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSF 536 (558)
Q Consensus 480 ~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~f 536 (558)
+.+++++++|++||+|+++. ..++++|+..+.++.+|.+|.+|.+..
T Consensus 407 ~~~l~~~~~i~~fL~Q~~~~----------~~~~~~~~~~~~~~~~G~l~~l~~~~i 453 (502)
T PRK09281 407 RAQLERGQRLVELLKQPQYS----------PLPVEEQVVILYAGTNGYLDDVPVEKV 453 (502)
T ss_pred HHHHHHHHHHHHHhCCCCCC----------CCCHHHHHHHHHHHhcCccccCCHHHH
Confidence 99999999999999999887 779999999999999999999998644
No 13
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=100.00 E-value=1.5e-105 Score=870.75 Aligned_cols=422 Identities=25% Similarity=0.392 Sum_probs=387.5
Q ss_pred CceeeEEEEECCeEEEEeCCCC-chhhhceEEeccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceecc
Q 008638 85 GAIGQVCQVIGAVVDVRFDEGL-PPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (558)
Q Consensus 85 ~~~G~V~~V~G~VVdv~F~~gL-p~i~~~Lev~~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpV 163 (558)
..+|+|++|.|+++.++ |+ ...++++.... + ....||+ .++++.+.+++|+++.||+.|+.|..||++++|||
T Consensus 25 ~~~G~V~~v~g~ii~v~---g~~~~~~ge~~~i~-~-~~~g~Vi-~~~~~~~~~~~~~~~~gi~~G~~V~~tg~~~~v~v 98 (501)
T TIGR00962 25 EEVGTVVSVGDGIARVY---GLENVMSGELIEFE-G-GVQGIAL-NLEEDSVGAVIMGDYSNIREGSTVKRTGRILKVPV 98 (501)
T ss_pred EEEEEEEEEeCCEEEEE---CCcCCCCCCEEEEC-C-CeEEEEE-EecCCeEEEEEecCCcCCCCCCeeEecCCccEEec
Confidence 35799999999999997 77 44445544333 2 3445555 55888899999999999999999999999999999
Q ss_pred CccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHHH
Q 008638 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243 (558)
Q Consensus 164 G~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~ 243 (558)
|+++||||+|++|+|||+++++....++|++.++|++++|.++++||+||||+||+|+|||||||+||||++|+|||+|+
T Consensus 99 g~~llGRV~d~~G~pld~~~~~~~~~~~~i~~~~p~~~~R~~i~~pl~TGi~aID~l~pigrGQr~~I~g~~g~GKt~La 178 (501)
T TIGR00962 99 GDGLLGRVVNALGQPIDGKGPIDSDEFRPIEKIAPGVMERKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAVA 178 (501)
T ss_pred ChHhcCCEeCCCCCeeCCCCCcCCCCceeeecCCCChhhcCCcCceeccCCceeeccCCcccCCEEEeecCCCCCccHHH
Confidence 99999999999999999999887777889999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhH
Q 008638 244 MELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR 323 (558)
Q Consensus 244 ~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfR 323 (558)
+++|.|++. ++.+|||++||||+||+.+++++|.+.+++ +||++|++|+|+||++|++++|+|||+|||||
T Consensus 179 l~~i~~~~~-~dv~~V~~~IGer~rev~e~~~~~~~~~~l--------~~tvvV~atsd~p~~~r~~a~~~a~aiAEyfr 249 (501)
T TIGR00962 179 IDTIINQKD-SDVYCVYVAIGQKASTVAQVVRKLEEHGAM--------DYTIVVAATASDSASLQYLAPYTGCTMAEYFR 249 (501)
T ss_pred HHHHHhhcC-CCeEEEEEEccCChHHHHHHHHHHHhcCcc--------ceeEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 788888753 334579999999999999999999887644 59999999999999999999999999999999
Q ss_pred HhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCC----CCCceeeEEEEeecCCCCCCc
Q 008638 324 DAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT----KKGSITSVQAIYVPADDLTDP 399 (558)
Q Consensus 324 d~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~----~~GSIT~i~~V~v~~dD~~dp 399 (558)
| +|+||||+|||+||||+|+||||+++||||+++||||++|+.|++|+|||++. ++||||+||+|++|+||++||
T Consensus 250 d-~G~~VLlv~Ddltr~A~A~REisl~lgepP~~~gYP~~vf~~~srLlERag~~~~~~g~GSITal~~V~~~~dD~s~p 328 (501)
T TIGR00962 250 D-NGKHALIIYDDLSKHAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDEKGGGSLTALPIIETQAGDVSAY 328 (501)
T ss_pred H-cCCCEEEEecchHHHHHHHHHHHHhcCCCCcccCcCchHHHHHHHHHHHHhhccCCCCCcceEEEEEEECCCCCCCCc
Confidence 9 79999999999999999999999999999999999999999999999999974 379999999999999999999
Q ss_pred hhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCChhH
Q 008638 400 APATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDD 479 (558)
Q Consensus 400 ip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~~ 479 (558)
||+++++||||||||||+||++||||||||+.|+||++++. ..++|++++.++|.+|++|+|++++++++ .++++++
T Consensus 329 I~~~~~sItDGqIvLsr~La~~G~~PAIdv~~SvSRv~~~~-~~~~~~~~a~~lr~~la~y~e~~~l~~~g--~~ld~~~ 405 (501)
T TIGR00962 329 IPTNVISITDGQIFLESDLFNSGIRPAINVGLSVSRVGGAA-QIKAMKQVAGSLRLELAQYRELEAFSQFA--SDLDEAT 405 (501)
T ss_pred chHhhhhhcceEEEEcHhHHhCCCCCccCCccchhccCccc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCCHHH
Confidence 99999999999999999999999999999999999998655 56999999999999999999999999884 5699999
Q ss_pred HHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCccc
Q 008638 480 KLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQS 535 (558)
Q Consensus 480 ~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~ 535 (558)
+.+++++++|++||+|+.+. ++++++++..++++.+|.+|++|.+.
T Consensus 406 ~~~l~~~~~i~~fL~Q~~~~----------~~~~~~q~~~l~a~~~G~l~~v~~~~ 451 (501)
T TIGR00962 406 KAQLERGKRLVELLKQPQYK----------PLPVEEQVVILYAGTKGYLDDIPVDK 451 (501)
T ss_pred HHHHHHHHHHHHHhcCCCCC----------CcCHHHHHHHHHHHhcCCcccccHHH
Confidence 99999999999999999877 68899999999999999999998865
No 14
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=100.00 E-value=6.3e-106 Score=839.90 Aligned_cols=417 Identities=31% Similarity=0.515 Sum_probs=379.4
Q ss_pred ccCCceeeEEEEECCeEEEEeCCCCchhhhceEEe-c--cCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCC
Q 008638 82 TGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVV-D--HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSP 158 (558)
Q Consensus 82 ~~~~~~G~V~~V~G~VVdv~F~~gLp~i~~~Lev~-~--~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~ 158 (558)
.....+|+|++|.|.++++. |+-...+.+... . ......+||+.+ .++.+.+++|++..|+.+|++|..+|++
T Consensus 20 ~~~~~~G~v~~v~G~~lea~---g~~~~iGelc~i~~~~~~~~~~aEVvgf-~~~~~~L~p~~~~~gv~~g~~V~~~~~~ 95 (441)
T COG1157 20 DPYKRRGRLTRVTGLLLEAV---GPQARIGELCKIERSRGSEKVLAEVVGF-NEERVLLMPFEPVEGVSPGAEVVPTGRP 95 (441)
T ss_pred CcceEEEEEEEEeeeEEEEe---cCCCcccceEEEEecCCCCceeEEEEEE-cCCeEEEeccCccccCCCCCEEEecCCc
Confidence 34455799999999999997 655555665433 2 222238999998 5555669999999999999999999999
Q ss_pred ceeccCccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCC
Q 008638 159 ITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVG 238 (558)
Q Consensus 159 ~~VpVG~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~G 238 (558)
++||+|++|||||+|++|+|||+.+.+....+.|+..+||+++.|.++.++|.||||+||.|+|||+|||+|||+++|||
T Consensus 96 ~~v~~g~~lLGRVld~~G~plDg~~~~~~~~~~~l~~~pp~pm~R~~I~~~l~tGVRaIDgllT~G~GQRiGIFAgsGVG 175 (441)
T COG1157 96 LSVPVGDALLGRVLDGLGRPLDGGGLPDGTERRPLDAPPPNPLKRRPIEEPLDTGVRAIDGLLTCGKGQRIGIFAGSGVG 175 (441)
T ss_pred cccccChhhhhhhhccCCCcCcCCCCCCCcccccccCCCCCchhcccccccccccceeeecccccccCceeEEEecCCCc
Confidence 99999999999999999999999888888899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHH
Q 008638 239 KTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV 318 (558)
Q Consensus 239 KT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~ti 318 (558)
||||+.+|+++ +++ |++|+++||||+|||.| |+|..+.. ..++|||+|++|+|+||.+|.+++++|++|
T Consensus 176 KStLLgMiar~-t~a--Dv~ViaLIGERGREVrE----FIE~~Lg~----egl~rsViVvATSD~s~l~R~~aa~~At~I 244 (441)
T COG1157 176 KSTLLGMIARN-TEA--DVNVIALIGERGREVRE----FIEKDLGE----EGLKRSVVVVATSDESALMRLKAAFTATTI 244 (441)
T ss_pred HHHHHHHHhcc-ccC--CEEEEEEeeccchhHHH----HHHHhcch----hhccceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 99999877665 443 89999999999999955 55543322 246899999999999999999999999999
Q ss_pred HHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCCCC
Q 008638 319 AEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTD 398 (558)
Q Consensus 319 AEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~d 398 (558)
|||||| |||||||+|||+||||+|+|||+++.||||.++||||++|+.|++|+||+|++.+||||+||||++++||++|
T Consensus 245 AEyFRD-qG~~VLL~mDSlTRfA~AqREI~LA~GEpP~~kGYppSVF~~LP~LlERaG~~~~GsITafYTVLveGDD~~d 323 (441)
T COG1157 245 AEYFRD-QGKRVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPPSVFSELPRLLERAGNGDKGSITAFYTVLVEGDDMND 323 (441)
T ss_pred HHHHHh-CCCeEEEEeecHHHHHHHHHHHHHhcCCCCccCCCCchHHHHhHHHHhhcCCCCCCcEEEEEEEEeecCCCCC
Confidence 999999 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCChh
Q 008638 399 PAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSED 478 (558)
Q Consensus 399 pip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~ 478 (558)
||+|++++||||||||||+||++|||||||++.|+||+| +.++.++|+++|.++|++|+.|+|.+++|+++.|...++.
T Consensus 324 PiaD~~RsILDGHIvLsR~LA~~ghyPaIdvl~SiSRvm-~~i~~~~h~~~a~~~r~lls~y~e~edLi~iGaY~~G~D~ 402 (441)
T COG1157 324 PIADEVRSILDGHIVLSRALAEAGHYPAIDVLASISRVM-PQIVSEEHRKAARRLRQLLSRYEENEDLIRIGAYQKGSDP 402 (441)
T ss_pred chhhhhhhhccceEEeeHhHHhcCCCCCcchHHHHHHHh-hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCH
Confidence 999999999999999999999999999999999999997 7889999999999999999999999999999999988754
Q ss_pred -HHHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHc
Q 008638 479 -DKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLD 525 (558)
Q Consensus 479 -~~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~ 525 (558)
-..++++.++|++||+|+.++ +.+++++++.+..++.
T Consensus 403 ~~D~Ai~~~p~i~~fL~Q~~~e----------~~~~~~t~~~L~~~~~ 440 (441)
T COG1157 403 ELDKAIKLYPKIEQFLKQGIDE----------KSSFEETLEQLEAILS 440 (441)
T ss_pred HHHHHHHhhHHHHHHHcCCccc----------cCCHHHHHHHHHHHhc
Confidence 346999999999999998777 7888999999998764
No 15
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=6.1e-105 Score=857.90 Aligned_cols=424 Identities=26% Similarity=0.395 Sum_probs=386.7
Q ss_pred ceeeEEEEECCeEEEEeCCCC-chhhhceEEec--cCceeEEeeeeecCCceEEEEEeccccCcccCce-EEecCCCcee
Q 008638 86 AIGQVCQVIGAVVDVRFDEGL-PPILTALEVVD--HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQR-VLNTGSPITV 161 (558)
Q Consensus 86 ~~G~V~~V~G~VVdv~F~~gL-p~i~~~Lev~~--~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~-V~~tg~~~~V 161 (558)
.|++|++|.|++++++ |+ ...++++.... .+.....||+.+ .++.+.+++|+++.||++|+. |..||++++|
T Consensus 1 ~y~~v~~i~g~iv~v~---g~~~~~~ge~~~i~~~~~~~~~geVv~~-~~~~~~l~~~~~t~gi~~g~~~V~~tg~~~~v 76 (458)
T TIGR01041 1 EYSTITEIAGPLVFVE---GVEPVAYNEIVEIETPDGEKRRGQVLDS-SEGLAVVQVFEGTTGLDPTGTKVRFTGETLKL 76 (458)
T ss_pred CccEEEEEEccEEEEE---ccCCCCcCCEEEEEcCCCcEEEEEEEEE-ECCEEEEEEecCCcCcCCCCcEEEECCCceEE
Confidence 4799999999999997 66 44556654442 233367888877 566788999999999999986 9999999999
Q ss_pred ccCccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhH
Q 008638 162 PVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTV 241 (558)
Q Consensus 162 pVG~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~ 241 (558)
|||+++||||+|++|+|||+++++....+||++.++|++++|.++++||+||||+||+|+|||||||+||||++|+|||+
T Consensus 77 ~vg~~lLGRViD~~G~plD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~~ID~l~pig~GQR~gIfgg~G~GKs~ 156 (458)
T TIGR01041 77 PVSEDMLGRILNGSGEPIDGGPEIVPDERRDINGAPINPYAREYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNE 156 (458)
T ss_pred EcChhhccCEEccCCcccCCCCCCCccceeeccCCCCChhhcCCCCCcCCCCeEEEEccCccccCCEEEeeCCCCCCHHH
Confidence 99999999999999999999888877788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc----CCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHH
Q 008638 242 LIMELINNVAKAH----GGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLT 317 (558)
Q Consensus 242 L~~~~i~n~a~~~----~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~t 317 (558)
|+.+|+++ ++.+ +.+|||++||||+||+.||+++|.+.+. ++||++|++|+|+||.+|++++|+|+|
T Consensus 157 L~~~ia~~-~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~--------l~rtvvv~atsd~p~~~R~~a~~~a~t 227 (458)
T TIGR01041 157 LAAQIARQ-ATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGA--------LERAVVFLNLADDPAVERIVTPRMALT 227 (458)
T ss_pred HHHHHHHh-hcccCCCCceEEEEEEccccchHHHHHHHHHHhcCC--------cceEEEEEECCCCCHHHHHHHHHHHHH
Confidence 99876654 4432 2389999999999999999999987764 469999999999999999999999999
Q ss_pred HHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCC--CCCceeeEEEEeecCCC
Q 008638 318 VAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT--KKGSITSVQAIYVPADD 395 (558)
Q Consensus 318 iAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~--~~GSIT~i~~V~v~~dD 395 (558)
+||||||++|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||+|++|++|+||
T Consensus 228 iAEyfr~d~G~~VLli~DslTR~A~A~REIsl~~gepP~~~GYP~svfs~l~~LlERaG~~~~~~GSITai~tV~~~gdD 307 (458)
T TIGR01041 228 AAEYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVKGKKGSITQMPILTMPGDD 307 (458)
T ss_pred HHHHHHHccCCcEEEEEcChhHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHhcccCCCCCcceEEEEEEEcCCCC
Confidence 9999994389999999999999999999999999999999999999999999999999986 68999999999999999
Q ss_pred CCCchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCC----CccChHHHHHHHHHHHHHHccHHHHHHHHHhc
Q 008638 396 LTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSP----HILGEEHYNTARGVQKVLQNYKNLQDIIAILG 471 (558)
Q Consensus 396 ~~dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~----~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G 471 (558)
++||||+++++||||||||||+||++||||||||+.|+||+|+. +++.++|++++.+++..|+++++|+++.+..|
T Consensus 308 ~~dPI~d~~~sIlDGhivLsr~La~~G~yPAIDvl~SvSR~~~~~ig~~~~~~~~~~~a~~l~~~y~~~~~L~~i~~~~G 387 (458)
T TIGR01041 308 ITHPIPDLTGYITEGQIVLSRELHRKGIYPPINVLPSLSRLMKDGIGEGKTREDHKDVSDQLYAAYAEGRDLRGLVAIVG 387 (458)
T ss_pred CCCchHHhhhhhcceEEEEcHHHHhCCCCCccCCccchhhcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999865 35789999999999999999999999999889
Q ss_pred CCCCChhHHHHHHHHHHH-HHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCcccc
Q 008638 472 MDELSEDDKLTVARARKI-QRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSF 536 (558)
Q Consensus 472 ~~~l~~~~~~~v~~~~~i-~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~f 536 (558)
.++++++++..+.++++| ++||+|++++ .+++++++..+.+++ +++|++++
T Consensus 388 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~----------~~~~~~~~~~l~~~l----~~~~~~~~ 439 (458)
T TIGR01041 388 EEALSERDRKYLKFADLFERRFVRQGRNE----------NRSIEETLDIGWELL----SILPESEL 439 (458)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhcCCCCCC----------CCCHHHHHHHHHHHH----hhCCHHHH
Confidence 999999999999999995 7899999887 899999999998776 57888665
No 16
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=7.6e-105 Score=858.91 Aligned_cols=427 Identities=28% Similarity=0.413 Sum_probs=387.3
Q ss_pred CceeeEEEEECCeEEEEeCCCC-chhhhceEEec--cCceeEEeeeeecCCceEEEEEeccccCcc-cCceEEecCCCce
Q 008638 85 GAIGQVCQVIGAVVDVRFDEGL-PPILTALEVVD--HSVRLVLEVAQHMGEGVVRTIAMDGTEGLV-RGQRVLNTGSPIT 160 (558)
Q Consensus 85 ~~~G~V~~V~G~VVdv~F~~gL-p~i~~~Lev~~--~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~-~G~~V~~tg~~~~ 160 (558)
..||+|++|.|++++++ |+ +..++++.... .+....+||+.+ .++.+.+++|+++.||+ .|++|..||++++
T Consensus 2 ~~yg~V~~i~g~~v~v~---g~~~~~~ge~~~i~~~~~~~~~geVi~~-~~~~~~l~~~~~t~gl~i~G~~V~~tg~~~~ 77 (460)
T PRK04196 2 KEYRTVSEIKGPLLFVE---GVEGVAYGEIVEIELPNGEKRRGQVLEV-SEDKAVVQVFEGTTGLDLKDTKVRFTGEPLK 77 (460)
T ss_pred ceeEEEEEEECcEEEEe---ccCCCCCCCEEEEEcCCCCEEEEEEEEE-eCCeEEEEEccCCCCCCCCCCEEEeCCCccE
Confidence 35899999999999998 65 44555544443 233467899887 55667799999999999 8999999999999
Q ss_pred eccCccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChh
Q 008638 161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240 (558)
Q Consensus 161 VpVG~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT 240 (558)
||||+++||||+|++|+|||+++++....++|++.++|++++|.++++||+||||+||+|+|||||||+||||++|+|||
T Consensus 78 V~vg~~lLGRVvD~~G~PlD~~~~i~~~~~~~i~~~ap~~l~R~~i~epl~TGi~~ID~l~pig~GQR~gIfgg~G~GKs 157 (460)
T PRK04196 78 LPVSEDMLGRIFDGLGRPIDGGPEIIPEKRLDINGAPINPVAREYPEEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHN 157 (460)
T ss_pred EEcCcccccCEECccCCCccCCCCCCCCccCcccCCCCChhhcCCCCccccCCeEEEeccCcccCCCEEEeeCCCCCCcc
Confidence 99999999999999999999999887777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc----CCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHH
Q 008638 241 VLIMELINNVAKAH----GGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316 (558)
Q Consensus 241 ~L~~~~i~n~a~~~----~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~ 316 (558)
+|+.+|+++ ++.+ +.+|||++||||+||+.||+++|.+.++ ++||++|++|+|+||.+|++++|+|+
T Consensus 158 ~L~~~ia~~-~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~--------l~rtvvV~atsd~p~~~R~~a~~~a~ 228 (460)
T PRK04196 158 ELAAQIARQ-AKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGA--------LERSVVFLNLADDPAIERILTPRMAL 228 (460)
T ss_pred HHHHHHHHh-hhhccCCCceEEEEEEeccccHHHHHHHHHHHhcCC--------cceEEEEEEcCCCCHHHHHHHHHHHH
Confidence 999876654 4432 2389999999999999999999988764 45999999999999999999999999
Q ss_pred HHHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCC--CCCceeeEEEEeecCC
Q 008638 317 TVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT--KKGSITSVQAIYVPAD 394 (558)
Q Consensus 317 tiAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~--~~GSIT~i~~V~v~~d 394 (558)
||||||||++|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||+|++|++|+|
T Consensus 229 tiAEyfr~d~G~~VLli~DslTR~A~A~REIsl~~gepP~~~gYP~~vf~~l~~LlERaG~~~~~~GSITai~~V~~~gd 308 (460)
T PRK04196 229 TAAEYLAFEKGMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIKGKKGSITQIPILTMPDD 308 (460)
T ss_pred HHHHHHHHhcCCcEEEEEcChHHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhcCCCCCeeeEEEEEEEcCCC
Confidence 99999994389999999999999999999999999999999999999999999999999986 6899999999999999
Q ss_pred CCCCchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccC-----hHHHHHHHHHHHHHHccHHHHHHHHH
Q 008638 395 DLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILG-----EEHYNTARGVQKVLQNYKNLQDIIAI 469 (558)
Q Consensus 395 D~~dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~-----~~h~~~a~~~r~~La~y~el~~ii~i 469 (558)
|++||||+++++||||||+|||+||++||||||||+.|+||+++. +++ ++|++++.+++..|++|++|+++.+.
T Consensus 309 D~~dpI~d~~~sI~DG~ivLsr~La~~g~~PAIDvl~SvSR~~~~-~~~~~~~~~~~~~~a~~l~~~y~~~~~l~~~~~~ 387 (460)
T PRK04196 309 DITHPIPDLTGYITEGQIVLSRELHRKGIYPPIDVLPSLSRLMKD-GIGEGKTREDHKDVANQLYAAYARGKDLRELAAI 387 (460)
T ss_pred CCCCchhhhhhhhcceEEEEcHHHHhCCCCCccCCccchhhhccc-cCCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999844 467 99999999999999999999999998
Q ss_pred hcCCCCChhHHHHHHHHHHHH-HhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCccccccc
Q 008638 470 LGMDELSEDDKLTVARARKIQ-RFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMV 539 (558)
Q Consensus 470 ~G~~~l~~~~~~~v~~~~~i~-~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~f~~~ 539 (558)
.|.++++++++..+.++++++ +||+|++++ .+++++++..+..++ +++|+++..+.
T Consensus 388 ~G~~~l~d~~~~~~~~~~~~~~~fL~Q~~~~----------~~~~~~~~~~l~~~l----~~~~~~~l~~~ 444 (460)
T PRK04196 388 VGEEALSERDRKYLKFADAFEREFVNQGFDE----------NRSIEETLDLGWELL----SILPESELKRI 444 (460)
T ss_pred cCCCcCCHHHHHHHHHHHHHHHHHcCCCCCC----------CcCHHHHHHHHHHHH----hhCCHHHHHHH
Confidence 899999999999999999996 799999887 889999999988665 56888665443
No 17
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=1.1e-104 Score=847.49 Aligned_cols=412 Identities=22% Similarity=0.317 Sum_probs=374.3
Q ss_pred CceeeEEEEECCeEEEEeCCCCchhhhceEEeccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceeccC
Q 008638 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (558)
Q Consensus 85 ~~~G~V~~V~G~VVdv~F~~gLp~i~~~Lev~~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpVG 164 (558)
+.+|+|++|.|++++|+|+. +.+....++...+....+||+ +++++.+++++|++++||.+|++|..||++++||||
T Consensus 3 ~~~g~v~~i~G~~v~v~~~~--~~~ge~~~i~~~~~~~~geVi-~~~~~~v~~~~~~~t~Gl~~g~~V~~tg~~~~vpvg 79 (436)
T PRK02118 3 KIYTKITDITGNVITVEAEG--VGYGELATVERKDGSSLAQVI-RLDGDKVTLQVFGGTRGISTGDEVVFLGRPMQVTYS 79 (436)
T ss_pred ceeEEEEEEECcEEEEEeCC--CCCCCEEEEEcCCCCEEEEEE-EEcCCEEEEEEecCCcCCCCCCEEEeCCCceEEEcC
Confidence 46899999999999999742 334333454322225678885 669999999999999999999999999999999999
Q ss_pred ccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHHHH
Q 008638 165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM 244 (558)
Q Consensus 165 ~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~~ 244 (558)
+++||||+|++|+|||+++++.. +.+|++.++|++++|.+++++|+||||+||+|+||+||||+||||++|+|||+|+.
T Consensus 80 ~~lLGRV~d~~G~PiD~~~~~~~-~~~~i~~~~~~p~~R~~~~e~l~TGIkaID~l~pl~rGQkigIF~gaGvgk~~L~~ 158 (436)
T PRK02118 80 ESLLGRRFNGSGKPIDGGPELEG-EPIEIGGPSVNPVKRIVPREMIRTGIPMIDVFNTLVESQKIPIFSVSGEPYNALLA 158 (436)
T ss_pred ccccCCEEccCCcccCCCCCCCc-ceeecCCCCCChHHcCCcccccccCcEEeecccccccCCEEEEEeCCCCCHHHHHH
Confidence 99999999999999998877744 45999999999999999999999999999999999999999999999999999986
Q ss_pred HHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHH
Q 008638 245 ELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD 324 (558)
Q Consensus 245 ~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd 324 (558)
+|++ +++ .+++||++||||+||+++|+++|.+.+++ +||++|++|||+||++|++++++|+|+||||||
T Consensus 159 ~ia~-~~~--~~v~Vfa~iGeR~rE~~ef~~~~~~~~~l--------~rtvlv~~~adep~~~R~~~~~~AltiAEyfrd 227 (436)
T PRK02118 159 RIAL-QAE--ADIIILGGMGLTFDDYLFFKDTFENAGAL--------DRTVMFIHTASDPPVECLLVPDMALAVAEKFAL 227 (436)
T ss_pred HHHH-hhC--CCeEEEEEeccchhHHHHHHHHHhhCCCc--------ceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 5543 333 38999999999999999999999988755 599999999999999999999999999999999
Q ss_pred hCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcC-CCCCceeeEEEEeecCCCCCCchhhh
Q 008638 325 AEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT-TKKGSITSVQAIYVPADDLTDPAPAT 403 (558)
Q Consensus 325 ~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~-~~~GSIT~i~~V~v~~dD~~dpip~~ 403 (558)
+.|+||||++||+||||+|+||||+++||||+++||||++|++|++|+|||++ +++||||+||+|++|+||++||||++
T Consensus 228 ~g~~~VLli~DdlTr~a~A~REIsl~~ge~P~r~GYpp~lfs~L~~l~ERag~~~~~GSITai~~V~~p~DD~tdPi~d~ 307 (436)
T PRK02118 228 EGKKKVLVLLTDMTNFADALKEISITMDQIPSNRGYPGSLYSDLASRYEKAVDFEDGGSITIIAVTTMPGDDVTHPVPDN 307 (436)
T ss_pred cCCCCEEEeccCchHHHHHHHHHHHhcCCCCCCCCcCCcHHHHHHHHHHhcCCCCCCeeEEEEEEEEcCCCCcCccHHHH
Confidence 43499999999999999999999999999999999999999999999999998 46899999999999999999999999
Q ss_pred HhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccC----hHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCChhH
Q 008638 404 TFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILG----EEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDD 479 (558)
Q Consensus 404 ~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~----~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~~ 479 (558)
+++||||||||||+| ||||.|+||+| +.++| ++|+++|++++++|++|+|+++++++ |+ +||++|
T Consensus 308 ~~silDGqIvLsR~l--------ID~l~S~SRl~-~~v~g~~t~~~h~~~a~~l~~~~a~y~e~~dli~i-G~-eLs~~d 376 (436)
T PRK02118 308 TGYITEGQFYLRRGR--------IDPFGSLSRLK-QLVIGKKTREDHGDLMNAMIRLYADSREAKEKMAM-GF-KLSNWD 376 (436)
T ss_pred HHHhcCcEEEecccc--------ccCcccccccc-ccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHh-hh-hcCHHH
Confidence 999999999999998 99999999998 88888 69999999999999999999999996 76 899999
Q ss_pred HHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCccccc
Q 008638 480 KLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFY 537 (558)
Q Consensus 480 ~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~f~ 537 (558)
++.+++|+++++||.| +|++++++||++.+.+|++. +|+.+..
T Consensus 377 ~~~l~~~~~~e~~~~~-----------~g~~~~~~etl~~~~~~l~~----~~~~~~~ 419 (436)
T PRK02118 377 EKLLKFSELFESRLMD-----------LEVNIPLEEALDLGWKILAQ----CFHPEEV 419 (436)
T ss_pred HHHHHHHHHHHHHhhc-----------CCCcccHHHHHHHHHHHHHH----CCHHHHh
Confidence 9999999999998855 57899999999999999988 5555543
No 18
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=1.2e-103 Score=860.03 Aligned_cols=424 Identities=28% Similarity=0.404 Sum_probs=377.3
Q ss_pred CceeeEEEEECCeEEEEeCCCCchhhhceEEeccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceeccC
Q 008638 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (558)
Q Consensus 85 ~~~G~V~~V~G~VVdv~F~~gLp~i~~~Lev~~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpVG 164 (558)
...|+|++|.|++|.+++..+. .++++..++ +.+++.||+.+.++. +.+++|++|+||++|++|..||++++||+|
T Consensus 2 ~~~G~I~~V~Gpvv~~~~~~~~--~~~E~v~v~-~~~l~gEVi~~~~d~-a~iqv~e~T~Gl~~G~~V~~tg~plsv~lG 77 (586)
T PRK04192 2 MTKGKIVRVSGPLVVAEGMGGA--RMYEVVRVG-EEGLIGEIIRIEGDK-ATIQVYEETSGIKPGEPVEFTGEPLSVELG 77 (586)
T ss_pred CceeEEEEEECcEEEEEeCCCC--CccCEEEEC-CCcEEEEEEEEeCCc-eEEEEecCCcCCCCCCEEEeCCCccEEEcC
Confidence 3579999999999999854432 344543334 346899999986655 479999999999999999999999999999
Q ss_pred ccccceEEEEecccccccCCC--------------c--------------------------------------------
Q 008638 165 RVTLGRIMNVIGEPIDEKGDL--------------K-------------------------------------------- 186 (558)
Q Consensus 165 ~~lLGRV~d~lG~PiD~~~~i--------------~-------------------------------------------- 186 (558)
+++||||+|++|+|||+.+.. .
T Consensus 78 pglLGrv~Dg~grPLd~~~~~~~~~i~rG~~~~~l~~~~~w~f~p~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g 157 (586)
T PRK04192 78 PGLLGSIFDGIQRPLDELAEKSGDFLERGVYVPALDREKKWEFTPTVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSG 157 (586)
T ss_pred HHhcCCeecCCCCcccccchhcccccccCCCCCCCCcccccceecccccCCEecCCceEEEEecCCceeeeeecCCCCce
Confidence 999999999999999976410 1
Q ss_pred -------------------------------ccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCC
Q 008638 187 -------------------------------TEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGA 235 (558)
Q Consensus 187 -------------------------------~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~ 235 (558)
..++||++.++|. .+|.++++||.||||+||+|+||+||||++|||++
T Consensus 158 ~~~~i~~~G~ytv~~~i~~~~~~~G~~~~~~~~~~wPvr~~~p~-~~R~~~~~pL~TGirvID~l~Pi~kGq~~~Ipg~~ 236 (586)
T PRK04192 158 TVKEIVSEGDYTVDDTIAVLEDEDGEGVELTMMQKWPVRRPRPY-KEKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPF 236 (586)
T ss_pred EEEEEccCCCceeeeEEEEEEccCCceeeeccccccccccCCcc-cccCCCCCccccCchhhhcccccccCCeEEEecCC
Confidence 0156899999887 99999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHH
Q 008638 236 GVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTG 315 (558)
Q Consensus 236 g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta 315 (558)
|+|||+|+++++++ + +.|++||++||||+||++|++++|.+.-....+. ..++||++|+||||+|+++|++++|||
T Consensus 237 G~GKTvl~~~iak~-a--~adivVyvg~GERg~E~~e~l~ef~~l~dp~~g~-~~m~RTvlVanTSn~Pv~aR~~s~ytg 312 (586)
T PRK04192 237 GSGKTVTQHQLAKW-A--DADIVIYVGCGERGNEMTEVLEEFPELIDPKTGR-PLMERTVLIANTSNMPVAAREASIYTG 312 (586)
T ss_pred CCCHHHHHHHHHhc-C--CCCEEEEEEcCcChHHHHHHHHHHHhhccccccc-ccceeEEEEEECCCCCHHHHHHHHHHH
Confidence 99999999887765 3 4589999999999999999999999853322322 357899999999999999999999999
Q ss_pred HHHHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCC-----CCCceeeEEEEe
Q 008638 316 LTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT-----KKGSITSVQAIY 390 (558)
Q Consensus 316 ~tiAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~-----~~GSIT~i~~V~ 390 (558)
+|+|||||| +|+||||++||+||||+|+||||+++||||+++||||||+++|++||||||.. .+||||+|++|+
T Consensus 313 iTiAEYfRd-~G~~Vllm~DStSR~AeAlREIS~~l~E~P~~eGYP~yL~S~La~~yERAG~v~~~~~~~GSIT~i~aVs 391 (586)
T PRK04192 313 ITIAEYYRD-MGYDVLLMADSTSRWAEALREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEEGSVTIIGAVS 391 (586)
T ss_pred HHHHHHHHH-CCCCEEEEecChHHHHHHHHHHHHhcCCCCccCCcCccHHHHHHHHHHhhcccccCCCCCcceEEEEEEE
Confidence 999999999 79999999999999999999999999999999999999999999999999874 479999999999
Q ss_pred ecCCCCCCchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCC------ccChHHHHHHHHHHHHHHccHHHH
Q 008638 391 VPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPH------ILGEEHYNTARGVQKVLQNYKNLQ 464 (558)
Q Consensus 391 v~~dD~~dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~------~~~~~h~~~a~~~r~~La~y~el~ 464 (558)
+|+||++||||++|++|+||||+|||+||++||||||||+.|+||+++.. .++++|++++++++++|++|+|++
T Consensus 392 ~pggD~sePVt~~t~~i~dg~i~Ldr~LA~~ghyPAId~l~S~Sr~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~~el~ 471 (586)
T PRK04192 392 PPGGDFSEPVTQNTLRIVKVFWALDAELADRRHFPAINWLTSYSLYLDQVAPWWEENVDPDWRELRDEAMDLLQREAELQ 471 (586)
T ss_pred CCCCCCCcchHHHHHHHhCceEEEcHHHHhCCcCCccCCccchhhhhhcccchhhcccCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998643 346899999999999999999999
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHHH-HhhCCCCCccchhcCCCCceecHHHHHHHHHHHH
Q 008638 465 DIIAILGMDELSEDDKLTVARARKIQ-RFLSQPFHVAEVFTGAPGKYVELKESIASFQGVL 524 (558)
Q Consensus 465 ~ii~i~G~~~l~~~~~~~v~~~~~i~-~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il 524 (558)
++++++|.|+||++||++++++++|+ .||+|+++... +.++++++|+..|+.|+
T Consensus 472 eiv~lvG~d~Ls~~d~~~l~~a~~i~~~fL~Q~~f~~~------d~~~~l~k~~~~l~~i~ 526 (586)
T PRK04192 472 EIVRLVGPDALPEEDRLILEVARLIREDFLQQNAFDPV------DTYCPPEKQYEMLKLIL 526 (586)
T ss_pred HHHHHhCcccCCHHHHHHHHHHHHHHHhhcCCCCCCCc------cccccHHHHHHHHHHHH
Confidence 99999999999999999999999999 59999988744 44667777766666554
No 19
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=4.7e-103 Score=854.34 Aligned_cols=421 Identities=27% Similarity=0.407 Sum_probs=370.3
Q ss_pred eeeEEEEECCeEEEEeCCCCc-hhhhceEEeccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceeccCc
Q 008638 87 IGQVCQVIGAVVDVRFDEGLP-PILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGR 165 (558)
Q Consensus 87 ~G~V~~V~G~VVdv~F~~gLp-~i~~~Lev~~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpVG~ 165 (558)
.|+|.+|.|++|.++ |++ ..++++..++ +.+++.||+.+.+ +.+.+++|++|.||++|++|..||++++||+|+
T Consensus 1 ~G~I~~V~Gpvv~a~---g~~~~~~gE~v~v~-~~~l~gEVi~~~~-d~a~iqvye~t~Gl~~G~~V~~tg~plsV~lGp 75 (578)
T TIGR01043 1 KGRIIRVSGPLVVAD---GMKGAQMYEVVKVG-EEGLIGEIIRIEG-DKAFIQVYEETSGIKPGEPVVGTGAPLSVELGP 75 (578)
T ss_pred CCEEEEEECCEEEEe---cCCCCCcCCEEEEC-CCcEEEEEEEEcC-CeEEEEECCCCCCCCCCCEEEECCCccEEEcCH
Confidence 389999999999998 554 3445544444 3468999998855 555688999999999999999999999999999
Q ss_pred cccceEEEEecccccccCC----C----------cc--------------------------------------------
Q 008638 166 VTLGRIMNVIGEPIDEKGD----L----------KT-------------------------------------------- 187 (558)
Q Consensus 166 ~lLGRV~d~lG~PiD~~~~----i----------~~-------------------------------------------- 187 (558)
++||||+|++|+|||+.+. . ..
T Consensus 76 glLGrV~DgigrPLd~~~~~~g~~i~rg~~~~~l~~~~~w~f~p~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~ 155 (578)
T TIGR01043 76 GLLGSIYDGVQRPLDVLKEKTGDFIARGVDAPGLDRDKKWHFKPTVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGE 155 (578)
T ss_pred HHhcceeccCCccccCcccccccccccCccCCCcCcccccccccccccCccccCCceEEEEecccceeeeeecCCCCcce
Confidence 9999999999999997621 1 11
Q ss_pred -----------------------------cccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCC
Q 008638 188 -----------------------------EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVG 238 (558)
Q Consensus 188 -----------------------------~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~G 238 (558)
.+.||++. +|++++|.++++||.||||+||+|+||+||||++|||++|||
T Consensus 156 v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~wPvr~-p~p~~~R~~~~~pL~TGiRvID~l~Pi~kGqr~~I~gg~G~G 234 (578)
T TIGR01043 156 IVEIAEEGDYTVEDTIAVVDTDGDEEIKMYQKWPVRI-PRPYKEKLPPEVPLITGQRILDTFFPIAKGGTAAIPGPFGSG 234 (578)
T ss_pred EEEeccCCCceeeeeEEEEecCCceeeeeeeeccccc-CCCchhcCCCCcchhccchhhhccccccCCCEEEEecCCCCC
Confidence 12689987 677999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHH
Q 008638 239 KTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV 318 (558)
Q Consensus 239 KT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~ti 318 (558)
||+|+++++++ + +.|++||++||||+||++|++++|.+.....++. ..++||++|++|+|+||.+|++++|+|+||
T Consensus 235 KT~l~~~lak~-~--~adivVyvg~GERG~E~~e~le~f~~l~dp~~g~-~~m~RTvlVanTSn~p~~aR~~s~ytg~Ti 310 (578)
T TIGR01043 235 KTVTQHQLAKW-S--DADIVVYIGCGERGNEMTDVLEEFPELKDPKTGK-PLMERTVLIANTSNMPVAAREASIYTGITI 310 (578)
T ss_pred HHHHHHHHHhc-C--CCCEEEEEEeccChHHHHHHHHHhHhhccccccc-ccccceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 99999877664 2 4589999999999999999999998754333333 357899999999999999999999999999
Q ss_pred HHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCC-------CCCceeeEEEEee
Q 008638 319 AEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT-------KKGSITSVQAIYV 391 (558)
Q Consensus 319 AEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~-------~~GSIT~i~~V~v 391 (558)
|||||| +|+||||++||+||||+|+||||+++||||+++||||+||++|++||||||+. ++||||+|++|++
T Consensus 311 AEYfRD-~G~~Vllm~DS~sR~AeAlREIs~~lgE~P~~eGYP~yl~SrLa~~yERAG~~~~~~~~~r~GSIT~i~aVs~ 389 (578)
T TIGR01043 311 AEYFRD-MGYDVALMADSTSRWAEAMREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEERVGSVTVIGAVSP 389 (578)
T ss_pred HHHHHH-CCCCEEEEecChhHHHHHHHHHHHhcCCCCCCCCcCccHHHHHHHHHHhhccccccCCCCCCccEeEEEEEEC
Confidence 999999 79999999999999999999999999999999999999999999999999864 2699999999999
Q ss_pred cCCCCCCchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCC---Cc---cChHHHHHHHHHHHHHHccHHHHH
Q 008638 392 PADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSP---HI---LGEEHYNTARGVQKVLQNYKNLQD 465 (558)
Q Consensus 392 ~~dD~~dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~---~~---~~~~h~~~a~~~r~~La~y~el~~ 465 (558)
|+||++||||++|++|+||||+|||+||++||||||||+.|+||+++. ++ ++++|+.++++++++|++|+||++
T Consensus 390 ~ggD~sdPVt~~t~~i~dg~i~Ldr~LA~~ghyPAId~l~S~Sr~~~~~~~~~~~~v~~~~~~~~~~~~~lL~~~~el~~ 469 (578)
T TIGR01043 390 PGGDFSEPVTQNTLRIVKVFWALDADLAQRRHFPAINWLQSYSLYVDLVQDWWHENVDPDWREMRDEAMDLLQKESELQE 469 (578)
T ss_pred CCCCCCccHHHHHHHHhCcEEEeCHHHHhcCCCCCcCcccchhhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999743 23 789999999999999999999999
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHH-HhhCCCCCccchhcCCCCceecHHHHHHHHHHHH
Q 008638 466 IIAILGMDELSEDDKLTVARARKIQ-RFLSQPFHVAEVFTGAPGKYVELKESIASFQGVL 524 (558)
Q Consensus 466 ii~i~G~~~l~~~~~~~v~~~~~i~-~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il 524 (558)
|+++.|.|.|+++||.++++|+.++ .||+|+.+..- ..++++++++..++.|+
T Consensus 470 iv~lvG~d~L~~~d~~il~~a~~i~e~FLqQ~~~~~~------d~~~~~~k~~~~L~~i~ 523 (578)
T TIGR01043 470 IVQLVGPDALPERQKLILEVARMIREAFLQQNAFDPV------DTYCPPQKQYRILRAIM 523 (578)
T ss_pred HHhccCCCCCCHHHHHHHHHhHHHHHhhCCCCCCCCc------cCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999997 59999976521 12456666666655544
No 20
>PRK06936 type III secretion system ATPase; Provisional
Probab=100.00 E-value=1e-102 Score=834.71 Aligned_cols=415 Identities=28% Similarity=0.452 Sum_probs=376.1
Q ss_pred CCceeeEEEEECCeEEEEeCCCCchhhhceEEec-c-Cc-eeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCce
Q 008638 84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVD-H-SV-RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPIT 160 (558)
Q Consensus 84 ~~~~G~V~~V~G~VVdv~F~~gLp~i~~~Lev~~-~-~~-~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~ 160 (558)
...+|+|++|.|+++++. +....++++.... . .. .+..||+.+.++..+ +++|++++||+.|++|..||++++
T Consensus 21 ~~~~G~V~~v~g~~v~~~---~~~~~~ge~~~i~~~~~~~~~~~eVv~~~~~~~~-l~~~~~~~gi~~g~~V~~tg~~~~ 96 (439)
T PRK06936 21 IQIRGRVTQVTGTILKAV---VPGVRIGELCYLRNPDNSLSLQAEVIGFAQHQAL-LTPLGEMYGISSNTEVSPTGTMHQ 96 (439)
T ss_pred cceeeEEEEEECcEEEEE---eCCCCCCCEEEEecCCCCcceEEEEEEEECCeEE-EEecCCCCCCCCCCEEEeCCCceE
Confidence 456799999999999997 3334555544442 1 22 478899999666655 999999999999999999999999
Q ss_pred eccCccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChh
Q 008638 161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240 (558)
Q Consensus 161 VpVG~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT 240 (558)
||||+++||||+|++|+|||+++++....++||+.++|++++|.++++||+||||+||.++|+++|||++|||++|+|||
T Consensus 97 v~vg~~lLGRV~d~~G~plD~~~~~~~~~~~pi~~~~p~p~~R~~i~~~l~TGi~vid~l~~i~~Gq~~~I~G~sG~GKS 176 (439)
T PRK06936 97 VGVGEHLLGRVLDGLGQPFDGGHPPEPAAWYPVYADAPAPMSRRLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKS 176 (439)
T ss_pred EEeCccccCCEECCCCCccCCCCCCCccceeeccCCCCChHHccccCCCCcCCcceeeeeEEecCCCEEEEECCCCCChH
Confidence 99999999999999999999998887777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHH
Q 008638 241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE 320 (558)
Q Consensus 241 ~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAE 320 (558)
+|++.++++ . +.+++||++||||+||++||+++.... ..++||++|++|+|+||.+|++++|+|+|+||
T Consensus 177 tLl~~Ia~~-~--~~dv~V~~liGERgrEv~ef~~~~l~~--------~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAE 245 (439)
T PRK06936 177 TLLASLIRS-A--EVDVTVLALIGERGREVREFIESDLGE--------EGLRKAVLVVATSDRPSMERAKAGFVATSIAE 245 (439)
T ss_pred HHHHHHhcC-C--CCCEEEEEEEccCcHHHHHHHHHHhcc--------cccceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 998766554 2 348999999999999999888653322 13579999999999999999999999999999
Q ss_pred HhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCCCCch
Q 008638 321 HFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPA 400 (558)
Q Consensus 321 yfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~dpi 400 (558)
|||| +|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.++||||+|+||++|+||++|||
T Consensus 246 yfrd-~G~~Vll~~DslTR~A~A~REisl~~gepP~~~gyp~svfs~l~~l~ERaG~~~~GSIT~i~tVl~~gdD~~dpI 324 (439)
T PRK06936 246 YFRD-QGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSDKGSITALYTVLVEGDDMTEPV 324 (439)
T ss_pred HHHH-cCCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCccHHHHHHHHHHhhccCCCcceeeeEEEEccCCCCCcch
Confidence 9999 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCC-CChhH
Q 008638 401 PATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDE-LSEDD 479 (558)
Q Consensus 401 p~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~-l~~~~ 479 (558)
|+++++|+||||+|||+||++||||||||+.|+||++ +.+++++|++++.++|++|++|+|+++++++++|+. .+++.
T Consensus 325 ~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~-~~~~~~~~~~~a~~~r~~la~y~e~e~li~iG~y~~g~d~~~ 403 (439)
T PRK06936 325 ADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVM-NQIVSKEHKTWAGRLRELLAKYEEVELLLQIGEYQKGQDKEA 403 (439)
T ss_pred HHHhhhhcceEEEECHHHHhCCCCCccCCcccccccc-hhhCCHHHHHHHHHHHHHHHcchHHHHHHHhcCccCCCCHHH
Confidence 9999999999999999999999999999999999998 577899999999999999999999999999988764 34455
Q ss_pred HHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHc
Q 008638 480 KLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLD 525 (558)
Q Consensus 480 ~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~ 525 (558)
+.++.++++|++||+|++++ ..++++++..+..+++
T Consensus 404 d~ai~~~~~i~~fL~Q~~~~----------~~~~~~~~~~l~~~~~ 439 (439)
T PRK06936 404 DQAIERIGAIRGFLRQGTHE----------LSHFNETLNLLETLTQ 439 (439)
T ss_pred HHHHHhHHHHHHHcCCCCCC----------CCCHHHHHHHHHHHhC
Confidence 57999999999999999877 7899999999988763
No 21
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=1.5e-102 Score=840.87 Aligned_cols=416 Identities=17% Similarity=0.223 Sum_probs=381.1
Q ss_pred eEEEEECCeEEEEeCCCCc-hhhhceEEeccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceeccCccc
Q 008638 89 QVCQVIGAVVDVRFDEGLP-PILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVT 167 (558)
Q Consensus 89 ~V~~V~G~VVdv~F~~gLp-~i~~~Lev~~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpVG~~l 167 (558)
+|++|.|.++.|. |++ ...+++.....+.....+|. .+.++.+.+++++++.||+.|++|..||++++||||+++
T Consensus 4 ~V~~v~~~i~~v~---Gl~~~~~ge~~~~~~~~~~~g~V~-~~~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~l 79 (507)
T PRK07165 4 KIKSIFDYIVEVK---GEYDYQQNQFFTLKNNPNVKAFVI-SATEDKAYLLINNEKGKIKINDELIELNNTNKVKTSKEY 79 (507)
T ss_pred EEEEEeceEEEEE---cccCCCcCCEEEECCCCeEEEEEE-EEeCCeEEEEEccCccCCCCCCEEEECCCccEEECCccc
Confidence 7899999999997 873 33444333332223455555 458888999999999999999999999999999999999
Q ss_pred cceEEEEecccccccCCCcc-----cccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHH
Q 008638 168 LGRIMNVIGEPIDEKGDLKT-----EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242 (558)
Q Consensus 168 LGRV~d~lG~PiD~~~~i~~-----~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L 242 (558)
||||+|++|+|||+++++.. ...+|+++++|++++|.++++||+||||+||+|+|||||||+||||++|||||+|
T Consensus 80 LGRVvd~lG~piDg~g~i~~~~~~~~~~~~i~~~ap~~~~R~~v~epL~TGIkaID~l~pigrGQR~~Ifg~~gtGKT~l 159 (507)
T PRK07165 80 FGKIIDIDGNIIYPEAQNPLSKKFLPNTSSIFNLAHGLMTVKTLNEQLYTGIIAIDLLIPIGKGQRELIIGDRQTGKTHI 159 (507)
T ss_pred cCCEECCCCcccCCCCCCCcccccccccccccCCCCCchhhCCCCceeecCchhhhhcCCcccCCEEEeecCCCCCccHH
Confidence 99999999999999987765 5678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHh
Q 008638 243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF 322 (558)
Q Consensus 243 ~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyf 322 (558)
+.++|.|++. ++.+|||++||||+||+.+++++|.+.|++ +||++|++++ +||.+|+++||+|||+||||
T Consensus 160 al~~I~~q~~-~dv~~V~~~IGer~~ev~~~~~~l~~~gal--------~~tvvV~ats-d~~~~r~~ap~~a~tiAEyf 229 (507)
T PRK07165 160 ALNTIINQKN-TNVKCIYVAIGQKRENLSRIYETLKEHDAL--------KNTIIIDAPS-TSPYEQYLAPYVAMAHAENI 229 (507)
T ss_pred HHHHHHHhcC-CCeEEEEEEccCChHHHHHHHHHhhhcCce--------eeeEEEEeCC-CCHHHHHHHHHHHHHHHHHH
Confidence 8888888853 345689999999999999999999988754 5999999998 59999999999999999999
Q ss_pred HHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCC-CCceeeEEEEeecCCCCCCchh
Q 008638 323 RDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTK-KGSITSVQAIYVPADDLTDPAP 401 (558)
Q Consensus 323 Rd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~-~GSIT~i~~V~v~~dD~~dpip 401 (558)
|| + +|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.+ +||||++|+|++++||++||||
T Consensus 230 rd-~-~dVLlv~DdLTr~A~A~REisLllgepPgregYPg~vF~~~srLlERAg~~~g~GSITalpiV~t~~dDis~pIp 307 (507)
T PRK07165 230 SY-N-DDVLIVFDDLTKHANIYREIALLTNKPVGKEAFPGDMFFAHSKLLERAGKFKNRKTITALPILQTVDNDITSLIS 307 (507)
T ss_pred Hh-c-CceEEEEcChHHHHHHHHHHHhhccCCCCccCCCchHHHHhHHHHHhccCCCCCCceEEEEEEECCCCCCCCcch
Confidence 99 7 9999999999999999999999999999999999999999999999999875 7999999999999999999999
Q ss_pred hhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCChhHHH
Q 008638 402 ATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKL 481 (558)
Q Consensus 402 ~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~~~~ 481 (558)
+++++||||||||||+||++||||||||+.|+||+|+ ...++.|++++..+|++|++|+|+++++++ |++ ++++++.
T Consensus 308 dnv~sItDGqIvLsr~L~~~G~~PAIDvl~SvSRv~~-~~q~~~~~~~a~~~r~~la~Y~e~e~~~~~-~~~-ld~~~~~ 384 (507)
T PRK07165 308 SNIISITDGQIVTSSDLFASGKLPAIDIDLSVSRTGS-SVQSKTITKVAGEISKIYRAYKRQLKLSML-DYD-LNKETSD 384 (507)
T ss_pred hhhccccCeEEEEcHHHHhCCCCCCcCCccchhhccc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-CCHHHHH
Confidence 9999999999999999999999999999999999985 557899999999999999999999998776 886 9999999
Q ss_pred HHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCc
Q 008638 482 TVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPE 533 (558)
Q Consensus 482 ~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~ 533 (558)
+++++++|++||+|+.+. +.+..+++..+.++..|.+|++|.
T Consensus 385 ~l~~g~~i~~~L~Q~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~ 426 (507)
T PRK07165 385 LLFKGKMIEKMFNQKGFS----------LYSYRFVLLISKLISWGLLKDVKD 426 (507)
T ss_pred HHHHHHHHHHHhCCCCCC----------CCCHHHHHHHHHHHHhhhhhhCCc
Confidence 999999999999999887 678899999899999999999998
No 22
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=2e-102 Score=846.08 Aligned_cols=423 Identities=27% Similarity=0.408 Sum_probs=375.7
Q ss_pred ceeeEEEEECCeEEEEeCCCC-chhhhceEEeccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceeccC
Q 008638 86 AIGQVCQVIGAVVDVRFDEGL-PPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (558)
Q Consensus 86 ~~G~V~~V~G~VVdv~F~~gL-p~i~~~Lev~~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpVG 164 (558)
++|+|++|.|++|.++ |+ ...++++..++ +.+++.||+.+ .++.+.+++|+++.||++|++|..||++++|++|
T Consensus 1 ~~G~V~~v~G~vV~a~---g~~~~~~gE~v~v~-~~~l~gEVI~l-~~d~a~iq~ye~t~Gl~~G~~V~~tg~~lsv~lG 75 (591)
T TIGR01042 1 EYGYIYKVSGPVVVAE---NMAGAAMYELVRVG-HDELVGEIIRL-EGDKATIQVYEETSGLTVGDPVLRTGKPLSVELG 75 (591)
T ss_pred CceEEEEEECCEEEEe---cCCCCCcCCEEEEC-CCceEEEEEEE-cCCeEEEEEccCccCCCCCCEEEeCCCccEEEcC
Confidence 4699999999999997 66 23444544444 34689999988 5566779999999999999999999999999999
Q ss_pred ccccceEEEEecccccccC----C-----------Ccc------------------------------------------
Q 008638 165 RVTLGRIMNVIGEPIDEKG----D-----------LKT------------------------------------------ 187 (558)
Q Consensus 165 ~~lLGRV~d~lG~PiD~~~----~-----------i~~------------------------------------------ 187 (558)
+++||||+|++|+|||+.+ . +..
T Consensus 76 pglLG~V~DgigrPLd~~~~~~~~~fi~rG~~~~~ld~~~~w~f~p~~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~ 155 (591)
T TIGR01042 76 PGILGNIFDGIQRPLKAIAEQSQSIYIPRGVNVPALDRDKKWEFTPKKLRVGDHITGGDIYGTVFENSLIKHKIMLPPRA 155 (591)
T ss_pred HHHhhcccCcCCCchHHHHhhccCccccCCCCCCCCCccccceeeccccccCCCccCCCeEEEEecCCceeeeeecCCCC
Confidence 9999999999999999753 1 110
Q ss_pred ---------------------------------cccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecC
Q 008638 188 ---------------------------------EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGG 234 (558)
Q Consensus 188 ---------------------------------~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg 234 (558)
.+.||++. +|++++|.++++||.||||+||+|+||+||||++||||
T Consensus 156 ~g~v~~i~~~g~ytv~~~i~~~~~~g~~~~~~m~~~wPvr~-p~p~~~R~~~~~PL~TG~RvID~lfPi~kGqr~~I~gg 234 (591)
T TIGR01042 156 RGTITYIAPAGNYTVDDTVLEVEFQGVKKKFSMLQTWPVRS-PRPVTEKLPANTPLLTGQRVLDALFPCVQGGTTAIPGA 234 (591)
T ss_pred ceEEEEEccCCCceeeeEEEEEeeCCceeeeccceeeeccc-CCChhhccCCCCccccchhhhhhccchhcCCeEEEEcC
Confidence 02699998 67799999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCc-ccCCCeEEEEEecCCCCHHHHHHHHH
Q 008638 235 AGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGD-KQADSKCALVYGQMNEPPGARARVGL 313 (558)
Q Consensus 235 ~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~-~~~~~~t~vV~~t~~ep~~~r~~~~~ 313 (558)
+|||||+|+++|++ ++ +.|++||++||||+||++|++.+|.+......+. +..++||++|++|+|+|+++|++++|
T Consensus 235 ~G~GKT~l~~~lak-~s--~aDviVyvg~GERG~Em~evle~fp~l~dp~~g~~~~~m~rtvlVa~tsd~p~~~R~~s~y 311 (591)
T TIGR01042 235 FGCGKTVISQSLSK-YS--NSDAIVYVGCGERGNEMAEVLMDFPELTMEVDGREESIMKRTTLVANTSNMPVAAREASIY 311 (591)
T ss_pred CCcCHHHHHHHHHh-cc--CcCEEEEEEEeechHHHHHHHHHhHhhcccccccccccccceEEEEEcCCCCHHHHHHHHH
Confidence 99999999998754 33 3589999999999999999999998865433331 33578999999999999999999999
Q ss_pred HHHHHHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCC-------CCCceeeE
Q 008638 314 TGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT-------KKGSITSV 386 (558)
Q Consensus 314 ta~tiAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~-------~~GSIT~i 386 (558)
||+|||||||| +|+||||++||+||||+|+||||+++||||+++||||+||++|++||||||+. ++||||+|
T Consensus 312 tg~tiAEYfRD-~G~~Vll~~DS~tR~AeAlREIsl~lgE~P~~eGYPayl~SrLa~l~ERAG~~~~~~~~~~~GSIT~i 390 (591)
T TIGR01042 312 TGITLAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPEREGSVSIV 390 (591)
T ss_pred HHHHHHHHHHh-cCCCEEEEecChHHHHHHHHHHHhccCCCCCCCCcCccHHHHHHHHHHhccCCccCCCCCCCccEEEE
Confidence 99999999999 79999999999999999999999999999999999999999999999999974 37999999
Q ss_pred EEEeecCCCCCCchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccC---CCcc--ChHHHHHHHHHHHHHHccH
Q 008638 387 QAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLS---PHIL--GEEHYNTARGVQKVLQNYK 461 (558)
Q Consensus 387 ~~V~v~~dD~~dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~---~~~~--~~~h~~~a~~~r~~La~y~ 461 (558)
++|++|+||++|||+++|++|+|+||+|||+||++||||||||+.|+||+++ +++. +++|++++.+++++|++|+
T Consensus 391 ~aVs~~ggD~sePVt~~t~~i~~~f~~Ldr~LA~~ghyPAId~l~S~Sr~~~~l~~~~~~~~~~~~~~~~~~~~lL~~~~ 470 (591)
T TIGR01042 391 GAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALEEFYEKFYPEFVPLRTKAKEILQEEE 470 (591)
T ss_pred EEEECCCCCCCCchHHHHHHHhcceeeeCHHHHhCCCCCCcCCchhhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999973 2222 5899999999999999999
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHH-HhhCCCCCccchhcCCCCceecHHHHHHHHHHHH
Q 008638 462 NLQDIIAILGMDELSEDDKLTVARARKIQ-RFLSQPFHVAEVFTGAPGKYVELKESIASFQGVL 524 (558)
Q Consensus 462 el~~ii~i~G~~~l~~~~~~~v~~~~~i~-~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il 524 (558)
|++++++++|++.|+++|+.++++++.++ .||+|++|.+ ...++++++|+..++.|+
T Consensus 471 el~eiv~l~g~~~l~~~d~~i~~~a~~i~e~FLqQ~a~~~------~d~~~~~~kt~~~L~~i~ 528 (591)
T TIGR01042 471 DLNEIVQLVGKDALAETDKITLEVAKLIKEDFLQQNGYTP------YDRFCPFYKTVGMMRNMI 528 (591)
T ss_pred HHHHHHHHhCCccCCHHHHHHHHHHHHHHHHhCCCCCCCC------ccccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999998 6999998773 445678888777776665
No 23
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.1e-101 Score=827.17 Aligned_cols=419 Identities=28% Similarity=0.435 Sum_probs=379.2
Q ss_pred CCceeeEEEEECCeEEEEeCCCCchhhhceEEeccCc-eeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceec
Q 008638 84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSV-RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVP 162 (558)
Q Consensus 84 ~~~~G~V~~V~G~VVdv~F~~gLp~i~~~Lev~~~~~-~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~Vp 162 (558)
...+|+|++|.|++++|++.+....+....++...+. ...+||+++.++ .+.++++++++||..|+.|..||++++||
T Consensus 15 ~~~~g~v~~i~g~~i~v~g~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~~-~~~l~~~~~~~gi~~g~~V~~tg~~~~v~ 93 (442)
T PRK08927 15 LVIYGRVVAVRGLLVEVAGPIHALSVGARIVVETRGGRPVPCEVVGFRGD-RALLMPFGPLEGVRRGCRAVIANAAAAVR 93 (442)
T ss_pred ceeeeEEEEEEccEEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEcCC-eEEEEEccCccCCCCCCEEEeCCCccEEE
Confidence 3567999999999999997642334443345533222 478899999666 57899999999999999999999999999
Q ss_pred cCccccceEEEEecccccccCCCccc-ccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhH
Q 008638 163 VGRVTLGRIMNVIGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTV 241 (558)
Q Consensus 163 VG~~lLGRV~d~lG~PiD~~~~i~~~-~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~ 241 (558)
||+++||||+|++|+|||+++++... .++||+.++|++++|.+++++|+||||+||+|+|+++|||++|||++|+|||+
T Consensus 94 vg~~llGRVid~~G~piDg~~~~~~~~~~~~i~~~~p~~~~R~~~~~~l~TGir~ID~l~~i~~Gqri~I~G~sG~GKTt 173 (442)
T PRK08927 94 PSRAWLGRVVNALGEPIDGKGPLPQGPVPYPLRAPPPPAHSRARVGEPLDLGVRALNTFLTCCRGQRMGIFAGSGVGKSV 173 (442)
T ss_pred CChhhCCCEEccCCCCccCCCCCCCCcccccccCCCcChHHcCCcccccccceEEEeeeeEEcCCCEEEEECCCCCCHHH
Confidence 99999999999999999999887654 57899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHH
Q 008638 242 LIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEH 321 (558)
Q Consensus 242 L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEy 321 (558)
|++.++++ .+ .+++||++||||+||+.||+++..... .++||++|++|+|+||.+|++++|+|+|+|||
T Consensus 174 LL~~I~~~-~~--~d~~v~~~iGER~rEv~ef~~~~l~~~--------~l~rsvvv~atsd~~~~~r~~a~~~a~tiAEy 242 (442)
T PRK08927 174 LLSMLARN-AD--ADVSVIGLIGERGREVQEFLQDDLGPE--------GLARSVVVVATSDEPALMRRQAAYLTLAIAEY 242 (442)
T ss_pred HHHHHHhc-cC--CCEEEEEEEecCcHHHHHHHHHHhhcc--------CceeEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 99755543 33 478899999999999999887653321 35799999999999999999999999999999
Q ss_pred hHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcC--CCCCceeeEEEEeecCCCCCCc
Q 008638 322 FRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT--TKKGSITSVQAIYVPADDLTDP 399 (558)
Q Consensus 322 fRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~--~~~GSIT~i~~V~v~~dD~~dp 399 (558)
||| +|+||||++||+||||+|+||||+++||||+++||||++|++|++|+||||+ .++||||+|++|++|+||++||
T Consensus 243 frd-~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gyp~~~f~~l~~l~ERaG~~~~~~GSIT~i~tVlv~gdD~~dp 321 (442)
T PRK08927 243 FRD-QGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAGPGPIGEGTITGLFTVLVDGDDHNEP 321 (442)
T ss_pred HHH-CCCcEEEEEeCcHHHHhhhhHHHHhcCCCCcccCCCcchHHHhhHHHHHhcCCCCCCeeeeeeeeeEccCCCCCCc
Confidence 999 7999999999999999999999999999999999999999999999999998 4589999999999999999999
Q ss_pred hhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCChh-
Q 008638 400 APATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSED- 478 (558)
Q Consensus 400 ip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~- 478 (558)
||+++++|+||||||||+||++||||||||+.|+||++ +.+++++|++.+..+|++|++|+|+++++++++|+.+++.
T Consensus 322 i~d~~~~i~Dg~ivLsr~La~~g~~PAIDvl~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~edli~lg~y~~g~d~~ 400 (442)
T PRK08927 322 VADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTM-PGCNDPEENPLVRRARQLMATYADMEELIRLGAYRAGSDPE 400 (442)
T ss_pred hhhhhhccccEEEEEcHHHHhCCCCCccCCcccccccc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcCCCCHH
Confidence 99999999999999999999999999999999999997 7778999999999999999999999999999999766543
Q ss_pred HHHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHcc
Q 008638 479 DKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDG 526 (558)
Q Consensus 479 ~~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G 526 (558)
.+.+++++++|++||+|+.+. +.+++++++.+.+++.|
T Consensus 401 ~d~ai~~~~~i~~fL~Q~~~e----------~~~~~~~~~~l~~l~~~ 438 (442)
T PRK08927 401 VDEAIRLNPALEAFLRQGKDE----------ATSLAEGYARLAQILGG 438 (442)
T ss_pred HHHHHHccHHHHHhcCCCCCC----------CCCHHHHHHHHHHHhcc
Confidence 457899999999999998766 78999999999999977
No 24
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.1e-101 Score=825.11 Aligned_cols=414 Identities=28% Similarity=0.460 Sum_probs=381.0
Q ss_pred CceeeEEEEECCeEEEEeCCCCchhhhceEEecc-CceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceecc
Q 008638 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH-SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (558)
Q Consensus 85 ~~~G~V~~V~G~VVdv~F~~gLp~i~~~Lev~~~-~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpV 163 (558)
..+|+|++|.|+++++. |+....+++...+. +..+.+||+++. ++.+.++++++++||+.|++|..||++++|||
T Consensus 24 ~~~G~v~~v~g~~i~~~---g~~~~ige~~~i~~~~~~~~~EVv~~~-~~~~~l~~~~~~~gi~~g~~V~~tg~~~~v~v 99 (444)
T PRK08972 24 VASGKLVRVVGLTLEAT---GCRAPVGSLCSIETMAGELEAEVVGFD-GDLLYLMPIEELRGVLPGARVTPLGEQSGLPV 99 (444)
T ss_pred ceeeEEEEEEcCEEEEe---eCCCCCCCEEEEecCCCcEEEEEEEec-CCEEEEEECCCcCCCCCCCEEEECCCccEEEc
Confidence 34699999999999997 66566667555532 335889999985 55788999999999999999999999999999
Q ss_pred CccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHHH
Q 008638 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243 (558)
Q Consensus 164 G~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~ 243 (558)
|+++||||+|++|+|+|+.+++...++||+++++|++++|.++++||+||||+||.++|+++|||++|||++|+|||||+
T Consensus 100 g~~llGRVid~~G~plD~~~~~~~~~~~~i~~~~~~p~~R~~i~e~l~TGi~aID~ll~i~~GqrigI~G~sG~GKSTLL 179 (444)
T PRK08972 100 GMSLLGRVIDGVGNPLDGLGPIYTDQRASRHSPPINPLSRRPITEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLL 179 (444)
T ss_pred ChhhcCCeECCCCCCcCCCCCCCCCccccccCCCCChhhcCCCCCcccccceeecceEEEcCCCEEEEECCCCCChhHHH
Confidence 99999999999999999999887778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhH
Q 008638 244 MELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR 323 (558)
Q Consensus 244 ~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfR 323 (558)
..++++ .+.+++||++||||+||+.||++++...+ .++||++|++|+|+||.+|++++|+|+|+|||||
T Consensus 180 ~~I~~~---~~~dv~Vi~lIGER~rEv~efi~~~l~~~--------~l~rtvvv~atsd~p~~~R~~a~~~A~tiAEyfr 248 (444)
T PRK08972 180 GMMTRG---TTADVIVVGLVGERGREVKEFIEEILGEE--------GRARSVVVAAPADTSPLMRLKGCETATTIAEYFR 248 (444)
T ss_pred HHhccC---CCCCEEEEEEEcCChHHHHHHHHHhhccC--------CcccEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 766543 23478999999999999999999875443 3579999999999999999999999999999999
Q ss_pred HhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCC--CCCceeeEEEEeecCCCCCCchh
Q 008638 324 DAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT--KKGSITSVQAIYVPADDLTDPAP 401 (558)
Q Consensus 324 d~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~--~~GSIT~i~~V~v~~dD~~dpip 401 (558)
| +|+||||+|||+||||+|+||||+++||||+++||||++|+.|++|+|||++. ++||||+|++|++|+||++||||
T Consensus 249 d-~G~~VLl~~DslTR~A~A~REIsl~~gepP~~~GYPpsvfs~l~~L~ERAg~~~~~~GSITai~tVl~~gdD~~dpI~ 327 (444)
T PRK08972 249 D-QGLNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGGPGQGSITAFYTVLTEGDDLQDPIA 327 (444)
T ss_pred H-cCCCEEEEEcChHHHHHHHHHHHHhcCCCCccccCCchHHHHhHHHHHHhcCCCCCCceeeeEEEEEEeCCCCCcchH
Confidence 9 89999999999999999999999999999999999999999999999999975 47999999999999999999999
Q ss_pred hhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCC-hhHH
Q 008638 402 ATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELS-EDDK 480 (558)
Q Consensus 402 ~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~-~~~~ 480 (558)
+++++|+||||||||+||++||||||||+.|+||++ +.+++++|+++++++|++|++|+|+++++++++|...+ ++.+
T Consensus 328 d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~-~~i~~~~h~~~a~~~r~~ls~y~~~e~li~~g~y~~g~d~~~d 406 (444)
T PRK08972 328 DASRAILDGHIVLSRELADSGHYPAIDIEASISRVM-PMVISEEHLEAMRRVKQVYSLYQQNRDLISIGAYKQGSDPRID 406 (444)
T ss_pred HhhhhhcceEEEEcHHHHhCCCCCeeCCccccccCc-hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCHHHH
Confidence 999999999999999999999999999999999997 77889999999999999999999999999999998654 4466
Q ss_pred HHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHc
Q 008638 481 LTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLD 525 (558)
Q Consensus 481 ~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~ 525 (558)
.++++.++|++||+|+... .++++|++..+.++++
T Consensus 407 ~ai~~~~~i~~fl~Q~~~~----------~~~~~~~~~~l~~~~~ 441 (444)
T PRK08972 407 NAIRLQPAMNAFLQQTMKE----------AVPYDMSVNMLKQLAA 441 (444)
T ss_pred HHHHhhHHHHHHhCCCCCC----------CCCHHHHHHHHHHHHh
Confidence 7999999999999998877 8899999999998875
No 25
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=1.6e-100 Score=817.31 Aligned_cols=425 Identities=24% Similarity=0.344 Sum_probs=374.7
Q ss_pred ceeeEEEEECCeEEEEeCCCC-chhhhceEEe--ccCceeEEeeeeecCCceEEEEEeccccCccc-CceEEecCCCcee
Q 008638 86 AIGQVCQVIGAVVDVRFDEGL-PPILTALEVV--DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVR-GQRVLNTGSPITV 161 (558)
Q Consensus 86 ~~G~V~~V~G~VVdv~F~~gL-p~i~~~Lev~--~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~-G~~V~~tg~~~~V 161 (558)
+|++|++|.|+++.+. |+ ...++++... ..+.....||+.+ .++.+.+++|++++||+. |+.|..||++++|
T Consensus 1 ~y~~v~~i~G~~i~~~---g~~~~~~Ge~~~i~~~~~~~~~geVi~~-~~~~~~l~~~~~~~gi~~~g~~V~~t~~~~~v 76 (466)
T TIGR01040 1 EYRTVSGVNGPLVILD---NVKFPRFAEIVNLTLPDGTVRSGQVLEV-SGNKAVVQVFEGTSGIDAKKTTCEFTGDILRT 76 (466)
T ss_pred CCccceEEEccEEEEE---CCCCCCcCCEEEEEeCCCCEEEEEEEEE-eCCeEEEEEcCCCCCcccCCCEEEECCCccEE
Confidence 4789999999999997 66 4444554443 2222356788877 667778999999999996 9999999999999
Q ss_pred ccCccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhH
Q 008638 162 PVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTV 241 (558)
Q Consensus 162 pVG~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~ 241 (558)
|||+++||||+|++|+|||+++++....++||+.++|++++|.+++++|+||||+||+|+|||||||+||||++|+|||+
T Consensus 77 ~vg~~lLGRVid~~G~piD~~~~~~~~~~~~i~~~~~~~~~R~~i~e~l~TGI~aID~l~~ig~GQRigIfagsGvGKs~ 156 (466)
T TIGR01040 77 PVSEDMLGRVFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNE 156 (466)
T ss_pred EcCcccccCEECccccccCCCCCCCCCceeeccCCCCChhHcCCCCCeeecCcEEEeccCccccCCeeeeecCCCCCHHH
Confidence 99999999999999999999988877778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh------h-------cCCEEEEEEecCCchhHHHH-HHHHHHhcccccCcccCCCeEEEEEecCCCCHHH
Q 008638 242 LIMELINNVAK------A-------HGGFSVFAGVGERTREGNDL-YREMIESGVIKLGDKQADSKCALVYGQMNEPPGA 307 (558)
Q Consensus 242 L~~~~i~n~a~------~-------~~~v~V~~~iGER~rEv~d~-~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~ 307 (558)
|+.+|+++ ++ + .+.+|||++|||| ||+.++ +++|.+.|+ ++||++|++|+|+||.+
T Consensus 157 L~~~i~~~-~~~~~~~~aD~~~~~~~~~v~V~a~IGer-re~~efi~~~l~~~g~--------l~rtvvv~atsd~p~~~ 226 (466)
T TIGR01040 157 IAAQICRQ-AGLVKLPTKDVHDGHEDNFAIVFAAMGVN-METARFFKQDFEENGS--------MERVCLFLNLANDPTIE 226 (466)
T ss_pred HHHHHHHh-hccccccccccccccCCceEEEEEEeeee-hHHHHHHHHHHHhcCC--------cceEEEEEECCCCCHHH
Confidence 99886655 33 1 1128999999999 777774 456766654 46999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCC--CCCceee
Q 008638 308 RARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT--KKGSITS 385 (558)
Q Consensus 308 r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~--~~GSIT~ 385 (558)
|++++|+|+|+|||||+++|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||+|+. ++||||+
T Consensus 227 R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~A~A~REisl~~gepP~~~GYP~svfs~l~~L~ERaG~~~~~~GSITa 306 (466)
T TIGR01040 227 RIITPRLALTTAEYLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQ 306 (466)
T ss_pred HHHHHhhhHHHHHHHHHhcCCcEEEeccChHHHHHHHHHHHHhcCCCCCCcCcCchHHHHHHHHhhccccCCCCCcceEE
Confidence 99999999999999995589999999999999999999999999999999999999999999999999985 5899999
Q ss_pred EEEEeecCCCCCCchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccC-----hHHHHHHHHHHHHHHcc
Q 008638 386 VQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILG-----EEHYNTARGVQKVLQNY 460 (558)
Q Consensus 386 i~~V~v~~dD~~dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~-----~~h~~~a~~~r~~La~y 460 (558)
|++|++|+||++||||+++++||||||||||+||++||||||||+.|+||+|+ .+++ ++|+++++++...|+++
T Consensus 307 i~tV~~~~dD~~~pI~d~~~sIlDGhIvLsr~La~~g~yPAIDvl~SvSRl~~-~v~~~~~~~~~h~~~a~~l~~~y~~~ 385 (466)
T TIGR01040 307 IPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMK-SAIGEGMTRKDHSDVSNQLYACYAIG 385 (466)
T ss_pred EEEEECCCCCCCCcchhhhhhhcceEEEECHHHHhCCCCCccCCccchhhccc-cccccCcCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999984 4455 89999999988888888
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHH-HHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCccccccc
Q 008638 461 KNLQDIIAILGMDELSEDDKLTVARARKI-QRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMV 539 (558)
Q Consensus 461 ~el~~ii~i~G~~~l~~~~~~~v~~~~~i-~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~f~~~ 539 (558)
++|.++.+..|.|+++++++.++.++++| ++||+|++++ ..++.+++..-..++. .+|.+.+-++
T Consensus 386 ~~L~~ig~y~G~d~l~d~a~~~l~~~~~i~~~FL~Q~~~~----------~~~~~~~l~~~w~ll~----~~~~~~~~r~ 451 (466)
T TIGR01040 386 KDVQAMKAVVGEEALSSEDLLYLEFLDKFEKNFIAQGPYE----------NRTIFESLDIAWQLLR----IFPKEMLKRI 451 (466)
T ss_pred HHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHhccCcCC----------CcCHHHHHHHHHHHHH----hCCHHHhccC
Confidence 99999988899999999999999999999 6799999877 5666666666554444 5666666554
No 26
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=1.4e-99 Score=809.52 Aligned_cols=410 Identities=30% Similarity=0.495 Sum_probs=375.4
Q ss_pred eeEEEEECCeEEEEeCCCCchhhhc-eEEec-cCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceeccCc
Q 008638 88 GQVCQVIGAVVDVRFDEGLPPILTA-LEVVD-HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGR 165 (558)
Q Consensus 88 G~V~~V~G~VVdv~F~~gLp~i~~~-Lev~~-~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpVG~ 165 (558)
|+|++|.|++++|+++ +..+++ ..+.. .+..+.+||+++. ++.+++++|+++.||++|+.|..||++++||||+
T Consensus 1 G~V~~i~G~~i~v~~~---~~~ige~~~i~~~~~~~~~~eVi~~~-~~~v~l~~~~~t~gl~~G~~V~~tg~~~~vpvg~ 76 (413)
T TIGR03497 1 GKVTRVIGLTIESKGP---KAKIGELCSILTKGGKPVLAEVVGFK-EENVLLMPLGEVEGIGPGSLVIATGRPLAIKVGK 76 (413)
T ss_pred CeEEEEECCEEEEEeC---CCCcCCEEEEEeCCCCeEEEEEEEEc-CCeEEEEEccCccCCCCCCEEEEcCCeeEEEcch
Confidence 8999999999999965 223344 34431 2345789999996 6668899999999999999999999999999999
Q ss_pred cccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHHHHH
Q 008638 166 VTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME 245 (558)
Q Consensus 166 ~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~~~ 245 (558)
++||||+|++|+|||+.+++...++||++.++|++++|.++++++.||||+||.++|+++|||++|||++|+|||+|+..
T Consensus 77 ~lLGRVid~~G~plD~~~~~~~~~~~~i~~~~p~~~~R~~~~~~~~tGi~~iD~l~~i~~Gqri~I~G~sG~GKTtLl~~ 156 (413)
T TIGR03497 77 GLLGRVLDGLGRPLDGEGPIIGEEPYPLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGM 156 (413)
T ss_pred hhcCCEEcCCCCcccCCCCCCCCccccccCCCcChHHccchhhhccccceeeeeEEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 99999999999999998888777889999999999999999999999999999999999999999999999999999965
Q ss_pred HHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHh
Q 008638 246 LINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA 325 (558)
Q Consensus 246 ~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~ 325 (558)
++ ++. +.++.|+++||||++|++|++++.... ..++||++|++|+|+||.+|++++|+|+|+||||||
T Consensus 157 i~-~~~--~~~~gvi~~~Ger~~ev~e~~~~~l~~--------~~~~~~v~v~~tsd~~~~~r~~~~~~a~tiAEyfr~- 224 (413)
T TIGR03497 157 IA-RNA--KADINVIALIGERGREVRDFIEKDLGE--------EGLKRSVVVVATSDQPALMRLKAAFTATAIAEYFRD- 224 (413)
T ss_pred Hh-CCC--CCCeEEEEEEccchHHHHHHHHHHhcc--------cccceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-
Confidence 54 433 357889999999999999988875332 135799999999999999999999999999999999
Q ss_pred CCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCCCCchhhhHh
Q 008638 326 EGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTF 405 (558)
Q Consensus 326 ~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~dpip~~~~ 405 (558)
+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+|||+++++||||+|++|++|+||++||||++++
T Consensus 225 ~G~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~GSIT~~~tVl~~gdD~~dpi~~~~~ 304 (413)
T TIGR03497 225 QGKDVLLMMDSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGNSQKGSITGFYTVLVDGDDMNEPIADAVR 304 (413)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhcCCCCCCCCcCchHHHHhHHHHHHhcCCCCcceeEEEEEEccCCCCCCcchhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCChh-HHHHHH
Q 008638 406 AHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSED-DKLTVA 484 (558)
Q Consensus 406 ~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~-~~~~v~ 484 (558)
+|+||||||||+||++||||||||+.|+||++ +.+++++|+++++++|++|++|+|+++++++++|++++++ ++.++.
T Consensus 305 si~dg~ivLsr~la~~g~~PAId~~~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~~~li~~g~~~~g~d~~~~~~i~ 383 (413)
T TIGR03497 305 GILDGHIVLSRELAAKNHYPAIDVLASVSRVM-NEIVSEEHKELAGKLRELLAVYKEAEDLINIGAYKRGSNPKIDEAIR 383 (413)
T ss_pred ccccEEEEECHHHHhCCCCCccCCccccccCc-cccCCHHHHHHHHHHHHHHHhhHHHHHHHHhcCcccCCCHHHHHHHH
Confidence 99999999999999999999999999999997 6788999999999999999999999999999999977654 778999
Q ss_pred HHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHH
Q 008638 485 RARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVL 524 (558)
Q Consensus 485 ~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il 524 (558)
++++|++||+|+.++ +.+++++++.+.+++
T Consensus 384 ~~~~i~~fl~Q~~~~----------~~~~~~~~~~l~~~~ 413 (413)
T TIGR03497 384 YIEKINSFLKQGIDE----------KFTFEETVQLLKTLF 413 (413)
T ss_pred HHHHHHHHhCCCCCC----------CCCHHHHHHHHHhhC
Confidence 999999999999887 789999999887763
No 27
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=3.9e-99 Score=809.40 Aligned_cols=415 Identities=27% Similarity=0.467 Sum_probs=382.7
Q ss_pred CCceeeEEEEECCeEEEEeCCCCchhhhceEEecc-Cc----eeEEeeeeecCCceEEEEEeccccCcccCceEEecCCC
Q 008638 84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH-SV----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSP 158 (558)
Q Consensus 84 ~~~~G~V~~V~G~VVdv~F~~gLp~i~~~Lev~~~-~~----~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~ 158 (558)
...+|+|++|.|.++++. |++..++++..... +. .+.+||+++ .++.+.+++|+++.||++|+.|..||++
T Consensus 25 ~~~~g~v~~v~g~~~~~~---g~~~~~ge~c~i~~~~~~~~~~~~~eVv~~-~~~~~~l~~~~~~~gi~~g~~V~~tg~~ 100 (451)
T PRK05688 25 PVVEGRLLRMVGLTLEAE---GLRAAVGSRCLVINDDSYHPVQVEAEVMGF-SGDKVFLMPVGSVAGIAPGARVVPLADT 100 (451)
T ss_pred cceeeEEEEEEecEEEEe---cCCCCCCCEEEEecCCCccccceEEEEEEE-cCCEEEEEEccCccCCCCCCEEEECCCc
Confidence 345799999999999997 76666677555522 22 478899997 8888999999999999999999999999
Q ss_pred ceeccCccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCC
Q 008638 159 ITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVG 238 (558)
Q Consensus 159 ~~VpVG~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~G 238 (558)
++||||+++||||+|++|+|||+++++....++|++.++|++++|.++++||+||||+||.|+|+++|||++|||++|+|
T Consensus 101 ~~v~vg~~llGRV~d~~G~plD~~~~~~~~~~~~i~~~~~~p~~R~~i~~~l~TGi~aID~l~~I~~GqrigI~G~sG~G 180 (451)
T PRK05688 101 GRLPMGMSMLGRVLDGAGRALDGKGPMKAEDWVPMDGPTINPLNRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVG 180 (451)
T ss_pred cEEEecccccCCEEeccCceecCCCCCCccceecccCCCCCHHHcccccCCcccceeeecceEEecCCcEEEEECCCCCC
Confidence 99999999999999999999999988877778899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHH
Q 008638 239 KTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV 318 (558)
Q Consensus 239 KT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~ti 318 (558)
||+|+..+. ++. +.+++|+++||+|++|+.++++++...+ .+.|+++|++|+|+||.+|++++++|+|+
T Consensus 181 KSTLl~~I~-g~~--~~dv~V~g~Ig~rg~ev~~~~~~~~~~~--------~l~rsvvv~atsd~~p~~r~~a~~~a~ai 249 (451)
T PRK05688 181 KSVLLGMMT-RFT--EADIIVVGLIGERGREVKEFIEHILGEE--------GLKRSVVVASPADDAPLMRLRAAMYCTRI 249 (451)
T ss_pred HHHHHHHHh-CCC--CCCEEEEEEeCcCcHhHHHHHHHHhhcC--------CccEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 999996544 332 3578899999999999999999887665 34699999999999999999999999999
Q ss_pred HHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCC--CCceeeEEEEeecCCCC
Q 008638 319 AEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTK--KGSITSVQAIYVPADDL 396 (558)
Q Consensus 319 AEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~--~GSIT~i~~V~v~~dD~ 396 (558)
|||||| +|+||||+|||+||||+|+||||+++||||+++||||++|+.|++|+|||++.+ +||||+||||++|+||+
T Consensus 250 AEyfrd-~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYp~svfs~l~~l~ERag~~~~~~GSITai~tVl~~gdD~ 328 (451)
T PRK05688 250 AEYFRD-KGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEPGGGSITAFYTVLSEGDDQ 328 (451)
T ss_pred HHHHHH-CCCCEEEEecchhHHHHHHHHHHHhcCCCCcccCCCchHHHHhHHHHHHhcCCCCCCceeeEEEEEEecCCCC
Confidence 999999 899999999999999999999999999999999999999999999999999875 89999999999999999
Q ss_pred CCchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCC-CC
Q 008638 397 TDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMD-EL 475 (558)
Q Consensus 397 ~dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~-~l 475 (558)
+||||+++++|+||||||||+||++||||||||+.|+||++ +.+++++|+++++++|++|++|+++++++++++|. ..
T Consensus 329 ~dpI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~-~~~~~~~~~~~a~~~r~~la~y~~~~dli~~g~y~~g~ 407 (451)
T PRK05688 329 QDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVM-PQVVDPEHLRRAQRFKQLWSRYQQSRDLISVGAYVAGG 407 (451)
T ss_pred CCchHHHHHhhccEEEEEcHHHHhCCCCCccCCccccCccc-hhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCC
Confidence 99999999999999999999999999999999999999997 77789999999999999999999999999999888 44
Q ss_pred ChhHHHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHc
Q 008638 476 SEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLD 525 (558)
Q Consensus 476 ~~~~~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~ 525 (558)
+++.+.++.++++|++||+|+.++ +.+++++++.+.+++.
T Consensus 408 d~~~d~ai~~~~~i~~fL~Q~~~e----------~~~~~~~~~~l~~~~~ 447 (451)
T PRK05688 408 DPETDLAIARFPHLVQFLRQGLRE----------NVSLAQSREQLAAIFA 447 (451)
T ss_pred CHHHHHHHHhhHHHHHHhCCCCCC----------CCCHHHHHHHHHHHhc
Confidence 566778999999999999999887 7899999999998874
No 28
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=4e-99 Score=805.68 Aligned_cols=405 Identities=30% Similarity=0.497 Sum_probs=370.8
Q ss_pred eeEEEEECCeEEEEeCCCCchhhhceEEec--cCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceeccCc
Q 008638 88 GQVCQVIGAVVDVRFDEGLPPILTALEVVD--HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGR 165 (558)
Q Consensus 88 G~V~~V~G~VVdv~F~~gLp~i~~~Lev~~--~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpVG~ 165 (558)
|+|++|.|++++|++. ...++++.... .+.....||+.+ .++.+++++|++++||++|+.|..||++++||||+
T Consensus 1 G~v~~v~g~~v~v~g~---~~~~ge~~~i~~~~~~~~~~eVv~~-~~~~v~l~~~~~t~gl~~G~~V~~tg~~~~v~vg~ 76 (411)
T TIGR03496 1 GRVTRVVGLVLEAVGL---RAPVGSRCEIESSDGDPIEAEVVGF-RGDRVLLMPLEDVEGLRPGARVFPLEGPLRLPVGD 76 (411)
T ss_pred CEEEEEECcEEEEEeC---CCCcCCEEEEEcCCCCeEEEEEEEe-cCCEEEEEEccCccCCCCCCEEEECCCccEEEcch
Confidence 8999999999999854 34445543332 233478899987 78889999999999999999999999999999999
Q ss_pred cccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHHHHH
Q 008638 166 VTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME 245 (558)
Q Consensus 166 ~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~~~ 245 (558)
++||||+|++|+|||+.+++....+||++.++|++++|.++++++.||+|+||.++|+++|||++|||++|+|||+|+..
T Consensus 77 ~llGrVid~~G~pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~~~tGi~~id~l~~i~~Gq~~~I~G~sG~GKTtLl~~ 156 (411)
T TIGR03496 77 SLLGRVIDGLGRPLDGKGPLDAGERVPLYAPPINPLKRAPIDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTLLGM 156 (411)
T ss_pred hhcCCEECCCCCCcCCCCCCCcccccccccCCCCHHhccCcceEeeeeEEeecceEEEecCcEEEEECCCCCCHHHHHHH
Confidence 99999999999999999888777889999999999999999999999999999999999999999999999999999965
Q ss_pred HHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHh
Q 008638 246 LINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA 325 (558)
Q Consensus 246 ~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~ 325 (558)
+++ +.+ .++.||++||||++|++++++++.+.++ ++||++|++|+|+||.+|++++|+|+|+||||||
T Consensus 157 I~~-~~~--~~~~vi~~iGer~~ev~e~~~~~~~~~~--------~~~tvvv~~tsd~~~~~r~~a~~~a~tiAEyfr~- 224 (411)
T TIGR03496 157 MAR-YTE--ADVVVVGLIGERGREVKEFIEDILGEEG--------LARSVVVAATADESPLMRLRAAFYATAIAEYFRD- 224 (411)
T ss_pred Hhc-CCC--CCEEEEEEEecChHHHHHHHHHHhhCCC--------cceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-
Confidence 554 333 4788899999999999999999887664 4599999999999999999999999999999999
Q ss_pred CCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcC--CCCCceeeEEEEeecCCCCCCchhhh
Q 008638 326 EGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT--TKKGSITSVQAIYVPADDLTDPAPAT 403 (558)
Q Consensus 326 ~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~--~~~GSIT~i~~V~v~~dD~~dpip~~ 403 (558)
+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+|||++ +++||||+|+||++|+||++||||++
T Consensus 225 ~G~~Vll~~Dsltr~A~A~REisl~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~~~GSIT~~~tv~~~~dd~~dpi~~~ 304 (411)
T TIGR03496 225 QGKDVLLLMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPQLVERAGNGEEGKGSITAFYTVLVEGDDQQDPIADA 304 (411)
T ss_pred CCCCEEEEEeChHHHHHHHHHHHHhcCCCCCccCcCHHHHHHhHHHHHHhcccCCCCcceeEEEEEEccCCCCCCcchhh
Confidence 7999999999999999999999999999999999999999999999999998 46899999999999999999999999
Q ss_pred HhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCC-hhHHHH
Q 008638 404 TFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELS-EDDKLT 482 (558)
Q Consensus 404 ~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~-~~~~~~ 482 (558)
+++|+||||+|||+||++||||||||+.|+||++ +.+++++|+++++++|++|++|+|+++++++++|++.+ ++.+.+
T Consensus 305 ~~~i~dg~ivLsr~la~~g~~PAId~~~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~~~l~~~g~y~~g~d~~~d~~ 383 (411)
T TIGR03496 305 ARAILDGHIVLSRELAEQGHYPAIDILASISRVM-PDVVSPEHRQAARRFKQLLSRYQENRDLISIGAYQAGSDPELDQA 383 (411)
T ss_pred hcccccEEEEEchhHHhCCCCCccCCCcccccch-hhhCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcCCCCHHHHHH
Confidence 9999999999999999999999999999999997 67789999999999999999999999999999997544 444668
Q ss_pred HHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHH
Q 008638 483 VARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIAS 519 (558)
Q Consensus 483 v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~ 519 (558)
++++++|++||+|++++ .+++++++..
T Consensus 384 i~~~~~i~~fl~Q~~~~----------~~~~~~~~~~ 410 (411)
T TIGR03496 384 IALYPRIEAFLQQGMRE----------RASFEESLEA 410 (411)
T ss_pred HHHHHHHHHHhCCCCCC----------CCCHHHHHhh
Confidence 99999999999999988 6788887754
No 29
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=8.1e-99 Score=803.77 Aligned_cols=410 Identities=31% Similarity=0.494 Sum_probs=372.5
Q ss_pred eeEEEEECCeEEEEeCCCCch--hhhceEEecc--CceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceecc
Q 008638 88 GQVCQVIGAVVDVRFDEGLPP--ILTALEVVDH--SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (558)
Q Consensus 88 G~V~~V~G~VVdv~F~~gLp~--i~~~Lev~~~--~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpV 163 (558)
|+|++|.|++++++ |+.. .++++..... +.....||+.+ +++.++++++++++||++|+.|..||++++|||
T Consensus 1 G~v~~v~g~~~~v~---g~~~~~~~ge~~~i~~~~~~~~~~eVv~~-~~~~v~l~~~~~~~gi~~G~~V~~tg~~~~i~v 76 (418)
T TIGR03498 1 GRVTAVTGLLIEVR---GLSRAVRLGDRCAIRARDGRPVLAEVVGF-NGDRVLLMPFEPLEGVGLGCAVFAREGPLAVRP 76 (418)
T ss_pred CEEEEEECcEEEEE---cCCCccCCCCEEEEEcCCCCEEEEEEEEE-cCCeEEEEEccCCcCCCCCCEEEECCCccEEEe
Confidence 89999999999998 6554 3455444332 22477899886 778889999999999999999999999999999
Q ss_pred CccccceEEEEecccccccCCCccc-ccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHH
Q 008638 164 GRVTLGRIMNVIGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242 (558)
Q Consensus 164 G~~lLGRV~d~lG~PiD~~~~i~~~-~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L 242 (558)
|+++||||+|++|+|||+++++... .+|||+.++|++++|.+++++|+|||++||.++|+++|||++|||++|+|||+|
T Consensus 77 g~~lLGRViD~lG~plD~~~~~~~~~~~~~i~~~~p~~~~R~~i~~~l~tGi~aiD~~~~i~~Gq~i~I~G~sG~GKTtL 156 (418)
T TIGR03498 77 HPSWLGRVINALGEPIDGKGPLPQGERRYPLRASPPPAMSRARVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTL 156 (418)
T ss_pred ChhhcCCEECCCCCccCCCCCCCCCcceechhhcCCChhhccCcccccCCccEEEeeeccccCCcEEEEECCCCCChHHH
Confidence 9999999999999999998887555 468999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHh
Q 008638 243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF 322 (558)
Q Consensus 243 ~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyf 322 (558)
+..++ ++. +.+..+|+++|||+||++++++++...+ .++||++|++|+|+||.+|++++|+|+|+||||
T Consensus 157 l~~I~-~~~--~~~~gvi~~iGer~~ev~~~~~~~l~~~--------~~~~tvvv~atsd~~~~~r~~a~~~a~~iAEyf 225 (418)
T TIGR03498 157 LSMLA-RNT--DADVVVIALVGERGREVREFLEDDLGEE--------GLKRSVVVVATSDESPLMRRQAAYTATAIAEYF 225 (418)
T ss_pred HHHHh-CCC--CCCEEEEEEEeeechHHHHHHHHhhhcc--------ccceeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 96444 333 3467899999999999999988754332 357999999999999999999999999999999
Q ss_pred HHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcC--CCCCceeeEEEEeecCCCCCCch
Q 008638 323 RDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT--TKKGSITSVQAIYVPADDLTDPA 400 (558)
Q Consensus 323 Rd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~--~~~GSIT~i~~V~v~~dD~~dpi 400 (558)
|| +|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||+++ .++||||+||||++|+||++|||
T Consensus 226 rd-~G~~Vll~~DslTr~A~A~REisl~~gepP~~~gyp~~vf~~l~~L~ERag~~~~~~GSIT~~~tVl~~gdd~~dpi 304 (418)
T TIGR03498 226 RD-QGKDVLLLMDSVTRFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLERAGPGAEGKGSITGIFTVLVDGDDHNEPV 304 (418)
T ss_pred HH-cCCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCchhhhhhhHHHHHhccCCCCCcceeeeEEEeccCCCCCCcc
Confidence 99 8999999999999999999999999999999999999999999999999996 45899999999999999999999
Q ss_pred hhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCC-hhH
Q 008638 401 PATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELS-EDD 479 (558)
Q Consensus 401 p~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~-~~~ 479 (558)
|+++++|+||||||||+||++||||||||+.|+||++ +.+++++|++++.++|++|++|+|+++++++++|++.+ ++.
T Consensus 305 ~d~~~si~DG~ivLsr~la~~g~~PAIDv~~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~~~~~~~g~y~~g~d~~~ 383 (418)
T TIGR03498 305 ADAVRGILDGHIVLDRAIAERGRYPAINVLASVSRLA-PRVWSPEERKLVRRLRALLARYEETEDLIRLGAYRKGSDPEL 383 (418)
T ss_pred hhhhheeeeeEEEECHHHHhCCCCCccCCcccccccc-hhhcCHHHHHHHHHHHHHHHhhHHHHHHHHhhCCcCCCCHHH
Confidence 9999999999999999999999999999999999997 67789999999999999999999999999999998755 445
Q ss_pred HHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHH
Q 008638 480 KLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVL 524 (558)
Q Consensus 480 ~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il 524 (558)
+.+++++++|++||+|+... +++++++++.+.+++
T Consensus 384 d~ai~~~~~i~~fl~Q~~~~----------~~~~~~~~~~l~~~~ 418 (418)
T TIGR03498 384 DEAIRLVPKIYEFLTQGPDE----------PTSLQDPFADLAAIL 418 (418)
T ss_pred HHHHHhHHHHHHHhCCCCCC----------CCCHHHHHHHHHhhC
Confidence 78999999999999998887 889999999988763
No 30
>PRK09099 type III secretion system ATPase; Provisional
Probab=100.00 E-value=1.3e-98 Score=805.68 Aligned_cols=414 Identities=29% Similarity=0.474 Sum_probs=378.1
Q ss_pred CCceeeEEEEECCeEEEEeCCCCchhhhceEEec--cCce-eEEeeeeecCCceEEEEEeccccCcccCceEEecCCCce
Q 008638 84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVD--HSVR-LVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPIT 160 (558)
Q Consensus 84 ~~~~G~V~~V~G~VVdv~F~~gLp~i~~~Lev~~--~~~~-lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~ 160 (558)
...+|+|++|.|+++++. |+...++++.... .+.. ...||+.+ .++.+.+++|+++.||+.|++|..||++++
T Consensus 22 ~~~~G~V~~v~g~~i~~~---g~~~~~ge~~~i~~~~g~~~~~~eVv~~-~~~~~~l~~~~~t~gi~~g~~V~~tg~~~~ 97 (441)
T PRK09099 22 VRRTGKVVEVIGTLLRVS---GLDVTLGELCELRQRDGTLLQRAEVVGF-SRDVALLSPFGELGGLSRGTRVIGLGRPLS 97 (441)
T ss_pred ceEeeEEEEEECCEEEEe---ccCCCCCCEEEEecCCCCeeeEEEEEEE-ECCEEEEEEccCCcCCCCCCEEEeCCCccE
Confidence 355799999999999997 6666666655442 2222 67899987 556677999999999999999999999999
Q ss_pred eccCccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChh
Q 008638 161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240 (558)
Q Consensus 161 VpVG~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT 240 (558)
||||+++||||+|++|+|||+.+++...+++|++.++|++++|.++++||+||+++||.++|+++|||++|||++|+|||
T Consensus 98 v~vg~~lLGrV~d~~G~piD~~~~~~~~~~~~i~~~~p~p~~R~~i~e~l~TGi~~ID~l~~i~~Gq~~~I~G~sG~GKT 177 (441)
T PRK09099 98 VPVGPALLGRVIDGLGEPIDGGGPLDCDELVPVIAAPPDPMSRRMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGKS 177 (441)
T ss_pred EEeccccccCEEcccCCccCCCCCCccccccccccCCCChhhcCCcccccCCCceeccceeeecCCCEEEEECCCCCCHH
Confidence 99999999999999999999988887777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHH
Q 008638 241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE 320 (558)
Q Consensus 241 ~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAE 320 (558)
+|++.+..+. +.+++||++||||+||+++|++++.+.+ .++|+++|++|+|+||.+|++++|+|+|+||
T Consensus 178 tLl~~ia~~~---~~d~~vi~~iGer~~ev~ef~~~~~~~~--------~l~rtvvv~~tsd~p~~~r~~a~~~a~tiAE 246 (441)
T PRK09099 178 TLMGMFARGT---QCDVNVIALIGERGREVREFIELILGED--------GMARSVVVCATSDRSSIERAKAAYVATAIAE 246 (441)
T ss_pred HHHHHHhCCC---CCCeEEEEEEccChHHHHHHHHHHhhcC--------CcceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 9997665432 2478899999999999999999886654 3469999999999999999999999999999
Q ss_pred HhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCCCCch
Q 008638 321 HFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPA 400 (558)
Q Consensus 321 yfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~dpi 400 (558)
|||| +|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||..++||||+|+||++++||++|||
T Consensus 247 yfrd-~G~~VLl~~DslTr~A~A~REisl~~gepP~~~gyP~~vf~~l~~l~ERag~~~~GSIT~i~tVl~~~dd~~dpI 325 (441)
T PRK09099 247 YFRD-RGLRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGMGETGSITALYTVLAEDESGSDPI 325 (441)
T ss_pred HHHH-cCCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCccHHHHhHHHHHhhcCCCCcchheeEEEEecCCCcCCcc
Confidence 9999 799999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred hhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCCh-hH
Q 008638 401 PATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSE-DD 479 (558)
Q Consensus 401 p~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~-~~ 479 (558)
|+++++|+||||||||+||++||||||||+.|+||++ +.+++++|++++.++|++|++|+|+++++++++|+..++ ..
T Consensus 326 ~d~~~~i~DG~ivLsr~La~~g~yPAIDvl~S~SR~~-~~~~~~~~~~~a~~lr~~la~y~e~e~li~iG~y~~g~d~~~ 404 (441)
T PRK09099 326 AEEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVM-PQVVPREHVQAAGRLRQLLAKHREVETLLQVGEYRAGSDPVA 404 (441)
T ss_pred hhhhheecceEEEEcHHHHhCCCCCccCCccccCccc-hhcCCHHHHHHHHHHHHHHHhhHHHHHHHHhcCccCCCChhH
Confidence 9999999999999999999999999999999999997 677899999999999999999999999999987765443 35
Q ss_pred HHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHH
Q 008638 480 KLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVL 524 (558)
Q Consensus 480 ~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il 524 (558)
+.+++++++|++||+|+... ++++++|+..+++++
T Consensus 405 d~~i~~~~~i~~fL~Q~~~~----------~~~~~~t~~~l~~~~ 439 (441)
T PRK09099 405 DEAIAKIDAIRDFLSQRTDE----------YSDPDATLAALAELS 439 (441)
T ss_pred HHHHHHHHHHHHHhCCCCCC----------CCCHHHHHHHHHHHh
Confidence 56899999999999998655 899999999999886
No 31
>PRK06820 type III secretion system ATPase; Validated
Probab=100.00 E-value=5.4e-98 Score=800.01 Aligned_cols=411 Identities=26% Similarity=0.407 Sum_probs=375.9
Q ss_pred CceeeEEEEECCeEEEEeCCCCchhhhceEEeccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceeccC
Q 008638 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (558)
Q Consensus 85 ~~~G~V~~V~G~VVdv~F~~gLp~i~~~Lev~~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpVG 164 (558)
..+|+|++|.|.++.+. +....++++.....+ ....||+.+.+ +.+.+++|++++||++|++|..||++++||||
T Consensus 28 ~~~G~v~~v~g~~~~~~---~~~~~~ge~~~i~~~-~~~~eVv~~~~-~~~~l~~~~~~~gi~~g~~v~~tg~~~~v~vg 102 (440)
T PRK06820 28 RYRGPIVEIGPTLLRAS---LPGVAQGELCRIEPQ-GMLAEVVSIEQ-EMALLSPFASSDGLRCGQWVTPLGHMHQVQVG 102 (440)
T ss_pred eEeeEEEEEECcEEEEE---ECCCCcCCEEEEecC-CeEEEEEEEeC-CeEEEEEccCccCCCCCCEEEECCCCcEEEec
Confidence 34699999999999997 444555665555322 47889998855 55789999999999999999999999999999
Q ss_pred ccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHHHH
Q 008638 165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM 244 (558)
Q Consensus 165 ~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~~ 244 (558)
+++||||+|++|+|||+++++ ..+++|++.++|++++|.+++++|.||||+||.|+|+++|||++|||++|+|||+|++
T Consensus 103 ~~llGrv~d~~G~pld~~~~~-~~~~~~i~~~~p~p~~R~~~~~~l~TGi~aID~l~~i~~Gqri~I~G~sG~GKStLl~ 181 (440)
T PRK06820 103 ADLAGRILDGLGAPIDGGPPL-TGQWRELDCPPPSPLTRQPIEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLG 181 (440)
T ss_pred hhhcCCEECccCCccCCCCCC-CcccccccCCCCChhhcCCchhhccCCCceecceEEecCCCEEEEECCCCCChHHHHH
Confidence 999999999999999998766 5667899999999999999999999999999999999999999999999999999996
Q ss_pred HHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHH
Q 008638 245 ELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD 324 (558)
Q Consensus 245 ~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd 324 (558)
+|.++. +.++.||++||||++|++++++++...+ .+.++++|++++|+||.+|++++|+|+|+||||||
T Consensus 182 -~I~~~~--~~dv~V~~~iGergrEv~ef~e~~l~~~--------~~~rtvvv~atsd~p~~~r~~a~~~a~tiAEyfrd 250 (440)
T PRK06820 182 -MLCADS--AADVMVLALIGERGREVREFLEQVLTPE--------ARARTVVVVATSDRPALERLKGLSTATTIAEYFRD 250 (440)
T ss_pred -HHhccC--CCCEEEEEEEccChHHHHHHHHHhhccC--------CceeEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 444433 4688999999999999999988876654 34699999999999999999999999999999999
Q ss_pred hCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCCCCchhhhH
Q 008638 325 AEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATT 404 (558)
Q Consensus 325 ~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~dpip~~~ 404 (558)
+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+|||++.++||||+|+||++|+||++||||+++
T Consensus 251 -~G~~VLl~~Dsltr~A~A~REisl~~gepP~~~GYP~~vf~~l~~L~ERag~~~~GSIT~i~tVl~~gdD~~dpI~d~~ 329 (440)
T PRK06820 251 -RGKKVLLMADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSITAFYTVLVEGDDMNEPVADEV 329 (440)
T ss_pred -cCCCEEEEccchhHHHHHHHHHHHhcCCCCccccCCccHHHHHHHHHHhhccCCCcceeEEEEEEccCCCCCCcchhhh
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCC-ChhHHHHH
Q 008638 405 FAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDEL-SEDDKLTV 483 (558)
Q Consensus 405 ~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l-~~~~~~~v 483 (558)
++|+||||+|||+||++||||||||+.|+||++ +.+++++|++.++.+|++|++|+|+++++++++|... +++.+.++
T Consensus 330 ~~ilDg~ivLsr~La~~g~yPAIDvl~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~~~li~~G~y~~g~d~~~d~~i 408 (440)
T PRK06820 330 RSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIM-PQIVSAGQLAMAQKLRRMLACYQEIELLVRVGEYQAGEDLQADEAL 408 (440)
T ss_pred ccccceEEEECHHHHhCCCCCccCCcccccccc-hhhCCHHHHHHHHHHHHHHHhhhHHHHHHHhhCccCCCCHHHHHHH
Confidence 999999999999999999999999999999997 6788999999999999999999999999999888754 45577899
Q ss_pred HHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHH
Q 008638 484 ARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVL 524 (558)
Q Consensus 484 ~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il 524 (558)
.++++|++||+|+.++ +++++|+++.+.+++
T Consensus 409 ~~~~~i~~fL~Q~~~e----------~~~~~~~~~~l~~~~ 439 (440)
T PRK06820 409 QRYPAICAFLQQDHSE----------TAHLETTLEHLAQVV 439 (440)
T ss_pred HhhHHHHHHhCCCCCC----------CCCHHHHHHHHHHHh
Confidence 9999999999998766 889999999998875
No 32
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=100.00 E-value=3.4e-97 Score=792.47 Aligned_cols=412 Identities=27% Similarity=0.400 Sum_probs=375.7
Q ss_pred CceeeEEEEECCeEEEEeCCCCchhhhceEEeccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceeccC
Q 008638 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (558)
Q Consensus 85 ~~~G~V~~V~G~VVdv~F~~gLp~i~~~Lev~~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpVG 164 (558)
..+|+|++|.|.++++. +....++++..... .....||+.+.+++ +.+++|+++.||++|++|..||++++||||
T Consensus 20 ~~~G~v~~v~g~~~~~~---~~~~~~ge~~~i~~-~~~~~eVv~~~~~~-~~l~~~~~~~gi~~g~~V~~tg~~~~v~vg 94 (433)
T PRK07594 20 CRWGRIQDVSATLLNAW---LPGVFMGELCCIKP-GEELAEVVGINGSK-ALLSPFTSTIGLHCGQQVMALRRRHQVPVG 94 (433)
T ss_pred ceeeEEEEEECCEEEEE---ECCcCCCCEEEEec-CCeEEEEEEEcCCe-EEEEEccCCcCCCCCCEEEeCCCccEEEeC
Confidence 34699999999999997 55556667655432 24788999985555 559999999999999999999999999999
Q ss_pred ccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHHHH
Q 008638 165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM 244 (558)
Q Consensus 165 ~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~~ 244 (558)
+++||||+|++|+|||++++. ...++|++..+|++++|..+++++.||||+||.++|+++|||++|||++|+|||+|+.
T Consensus 95 ~~llGrVid~~G~pld~~~~~-~~~~~~i~~~~p~~~~r~~v~~~l~tGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~ 173 (433)
T PRK07594 95 EALLGRVIDGFGRPLDGRELP-DVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA 173 (433)
T ss_pred hhhccCEEcccCCCcCCCCCC-cccccccccCCCCceeccCHhheeCCCceeeeeeeecCCCCEEEEECCCCCCccHHHH
Confidence 999999999999999998764 5567899999999999999999999999999999999999999999999999999996
Q ss_pred HHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHH
Q 008638 245 ELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD 324 (558)
Q Consensus 245 ~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd 324 (558)
.++ ++. +.+.+||++||||++|+.++++++.+.+ .++||++|++++|+|+.+|++++|+|+|+||||||
T Consensus 174 ~I~-~~~--~~d~~vi~~iGeRgrEv~efl~~~~~~~--------~~~rtv~vv~tsd~p~~~r~~a~~~a~tiAEyfrd 242 (433)
T PRK07594 174 MLC-NAP--DADSNVLVLIGERGREVREFIDFTLSEE--------TRKRCVIVVATSDRPALERVRALFVATTIAEFFRD 242 (433)
T ss_pred Hhc-CCC--CCCEEEEEEECCCchHHHHHHHHhhccC--------CcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 554 433 3577999999999999999998876544 34699999999999999999999999999999999
Q ss_pred hCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCCCCchhhhH
Q 008638 325 AEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATT 404 (558)
Q Consensus 325 ~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~dpip~~~ 404 (558)
+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+|||+..++||||+|++|++|+||++||||+++
T Consensus 243 -~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~GSIT~~~tVl~~gdD~~dpi~d~~ 321 (433)
T PRK07594 243 -NGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEV 321 (433)
T ss_pred -CCCcEEEEEeCHHHHHHHHHHHHHhcCCCCCCCCcCchhHHHhHHHHHhhcCCCCcchheeeeeeecCCCCCCchHHHh
Confidence 7999999999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred hhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCC-hhHHHHH
Q 008638 405 FAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELS-EDDKLTV 483 (558)
Q Consensus 405 ~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~-~~~~~~v 483 (558)
++|+||||||||+||++||||||||+.|+||++ +.+++++|+++|+++|++|++|+|+|++|++++|...+ ++.+.++
T Consensus 322 ~~ilDG~IvLsr~la~~g~yPAIDvl~S~SR~~-~~~~~~~h~~~a~~~r~~la~y~e~e~li~~G~y~~g~d~~~d~ai 400 (433)
T PRK07594 322 RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVF-PVVTSHEHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAI 400 (433)
T ss_pred hhhcceEEEEcHHHHhCCCCCccCCcccccccc-hhhCCHHHHHHHHHHHHHHHcchHHHHHHHhcCCCCCCCHHHHHHH
Confidence 999999999999999999999999999999997 77889999999999999999999999999999886554 4466799
Q ss_pred HHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHc
Q 008638 484 ARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLD 525 (558)
Q Consensus 484 ~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~ 525 (558)
++.++|++||+|+..+ ..++++++..+.+++.
T Consensus 401 ~~~~~i~~fl~Q~~~~----------~~~~~~~~~~l~~~~~ 432 (433)
T PRK07594 401 DTYPDICTFLRQSKDE----------VCGPELLIEKLHQILT 432 (433)
T ss_pred HhhHHHHHHhCCCCCC----------CCCHHHHHHHHHHHhc
Confidence 9999999999998877 8899999999988763
No 33
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=6.3e-97 Score=790.58 Aligned_cols=414 Identities=27% Similarity=0.476 Sum_probs=376.7
Q ss_pred cCCceeeEEEEECCeEEEEeCCCCchhhhceEEecc-C--ceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCc
Q 008638 83 GKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH-S--VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPI 159 (558)
Q Consensus 83 ~~~~~G~V~~V~G~VVdv~F~~gLp~i~~~Lev~~~-~--~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~ 159 (558)
....+|+|++|.|+++++. |+...++++..... + ....+||+.+ .++.+.+++|+++.||++|++|..||+++
T Consensus 15 ~~~~~G~v~~v~g~~v~~~---g~~~~~ge~~~i~~~~~~~~~~~eVv~~-~~~~~~l~~~~~t~gl~~G~~V~~tg~~~ 90 (434)
T PRK08472 15 LSPRFGSITKISPTIIEAD---GLNPSVGDIVKIESSDNGKECLGMVVVI-EKEQFGISPFSFIEGFKIGDKVFISKEGL 90 (434)
T ss_pred cceeeeEEEEEEccEEEEE---ecCCCCCCEEEEecCCCCCceEEEEEEE-eCCeEEEEEccCCCCCCCCCEEEeCCCce
Confidence 3456899999999999997 66556666554432 1 2477898877 77778899999999999999999999999
Q ss_pred eeccCccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCCh
Q 008638 160 TVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 239 (558)
Q Consensus 160 ~VpVG~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GK 239 (558)
+||||+++||||+|++|+|||+++++...+++||+.++|++++|.++++++.||+++||.++|+++||+++|||++|+||
T Consensus 91 ~v~vg~~llGRViD~~G~plD~~g~~~~~~~~~i~~~~~~~~~R~~i~~~l~tgi~aid~l~~i~~Gq~~~i~G~sG~GK 170 (434)
T PRK08472 91 NIPVGRNLLGRVVDPLGRPIDGKGAIDYERYAPIMKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGK 170 (434)
T ss_pred EEEcChhhcCCEECCCCCcccCCCCCCcccccccccCCCCHHHcCCcceeccchhHHhhhcceecCCCEEEEECCCCCCH
Confidence 99999999999999999999999887767789999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHH
Q 008638 240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVA 319 (558)
Q Consensus 240 T~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiA 319 (558)
|+|+..++.+ ++ .+++||++||||++|+++++++.. +. .++++++|++|+|+||++|++++++|+++|
T Consensus 171 StLl~~i~~~-~~--~~v~vi~~iGergrev~e~~~~~l-------~~--~l~~tvvV~atsddsp~~R~~~~~~a~~iA 238 (434)
T PRK08472 171 STLMGMIVKG-CL--APIKVVALIGERGREIPEFIEKNL-------GG--DLENTVIVVATSDDSPLMRKYGAFCAMSVA 238 (434)
T ss_pred HHHHHHHhhc-cC--CCEEEEEeeCccchhHHHHHHHHh-------cC--cccceEEEEECCCCCHHHhhHHHHHHHHHH
Confidence 9999766544 22 478999999999999988876432 11 256999999999999999999999999999
Q ss_pred HHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCC-CCceeeEEEEeecCCCCCC
Q 008638 320 EHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTK-KGSITSVQAIYVPADDLTD 398 (558)
Q Consensus 320 EyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~-~GSIT~i~~V~v~~dD~~d 398 (558)
||||| +|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+|||++.+ +||||+|++|++|+||++|
T Consensus 239 EyFrd-~G~~Vll~~DslTr~A~A~REi~l~~ge~P~~~Gyp~~vf~~l~~l~ERag~~~g~GSIT~~~tVlv~gdD~~d 317 (434)
T PRK08472 239 EYFKN-QGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGKEEGKGSITAFFTVLVEGDDMSD 317 (434)
T ss_pred HHHHH-cCCCEEEecccchHHHHHHHHHHHhcCCCCCccCcCchHHHHHHHHHHHhccCCCCceeeEeEEEEecCCCCCC
Confidence 99999 799999999999999999999999999999999999999999999999999976 8999999999999999999
Q ss_pred chhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCCh-
Q 008638 399 PAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSE- 477 (558)
Q Consensus 399 pip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~- 477 (558)
||++++++|+||||||||+||++||||||||+.|+||++ +.+++++|++++.++|++|++|+|+++++++++|....+
T Consensus 318 pi~d~~~~i~Dg~ivLsr~la~~g~~PAIDvl~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~e~li~~G~y~~g~d~ 396 (434)
T PRK08472 318 PIADQSRSILDGHIVLSRELTDFGIYPPINILNSASRVM-NDIISPEHKLAARKFKRLYSLLKENEVLIRIGAYQKGNDK 396 (434)
T ss_pred CchHHhhhhcceEEEEcHHHHhCCCCCccCCccccCccc-hhcCCHHHHHHHHHHHHHHHhchhHHHHHHhhCccCCCCH
Confidence 999999999999999999999999999999999999997 568899999999999999999999999999988866544
Q ss_pred hHHHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHH
Q 008638 478 DDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVL 524 (558)
Q Consensus 478 ~~~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il 524 (558)
+.+.+++++++|++||+|+.+. +++++++++.+.+++
T Consensus 397 ~~d~ai~~~~~i~~fL~Q~~~~----------~~~~~~~~~~l~~~~ 433 (434)
T PRK08472 397 ELDEAISKKEFMEQFLKQNPNE----------LFPFEQTFEQLEEIL 433 (434)
T ss_pred HHHHHHHhHHHHHHHhCCCCCC----------CCCHHHHHHHHHHHh
Confidence 4567999999999999999876 899999999999886
No 34
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=7.9e-97 Score=789.85 Aligned_cols=415 Identities=26% Similarity=0.446 Sum_probs=377.2
Q ss_pred cCCceeeEEEEECCeEEEEeCCCCchhhhceEEecc-Cc----eeEEeeeeecCCceEEEEEeccccCcccCceEEec--
Q 008638 83 GKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH-SV----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNT-- 155 (558)
Q Consensus 83 ~~~~~G~V~~V~G~VVdv~F~~gLp~i~~~Lev~~~-~~----~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~t-- 155 (558)
....+|+|++|.|.+|++. |+....+.+..... +. .+.+||+.+ .++.+.+++|++++||.+|+.|..|
T Consensus 24 ~~~~~G~v~~v~g~~v~~~---g~~~~iG~~c~i~~~~~~~~~~~~~eVvg~-~~~~~~l~~~~~~~gi~~g~~v~~~~~ 99 (455)
T PRK07960 24 AVRRYGRLTRATGLVLEAT---GLQLPLGATCVIERQNGSETHEVESEVVGF-NGQRLFLMPLEEVEGILPGARVYARNI 99 (455)
T ss_pred ccccccEEEEEEEEEEEEe---CCCCCCCCEEEEEeCCCccccceeeeEEEe-cCCEEEEEECCCccCCCCCCEEEECCc
Confidence 3355799999999999997 76566666555421 22 367899998 6677779999999999999999999
Q ss_pred -----CCCceeccCccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceee
Q 008638 156 -----GSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIG 230 (558)
Q Consensus 156 -----g~~~~VpVG~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~g 230 (558)
|++++||||+++||||+|++|+|||+++++....++|++.++|++++|.+++++|+||||+||+|+|+++|||++
T Consensus 100 ~~~~~~~~~~v~vg~~llGRvid~~G~piDg~~~~~~~~~~~i~~~~~~p~~R~~i~e~l~TGiraID~ll~I~~Gqri~ 179 (455)
T PRK07960 100 SGEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPAPDTGETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMG 179 (455)
T ss_pred ccccCCCceEEECCcccccCEECCCccccCCCCCCCCCccccccCCCcChHHhcccccchhccceeeeecccccCCcEEE
Confidence 999999999999999999999999999888777788999999999999999999999999999999999999999
Q ss_pred eecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHH
Q 008638 231 LFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARAR 310 (558)
Q Consensus 231 IfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~ 310 (558)
|||++|+|||+|+..+++ +. +.+++|+++||||++|+.++++++.+.+ .++++++|++++|+||.+|++
T Consensus 180 I~G~sG~GKTTLL~~Ia~-~~--~~d~iv~g~Igerg~ev~e~~~~~~~~~--------~~~~tvVv~~~ad~~~~~r~~ 248 (455)
T PRK07960 180 LFAGSGVGKSVLLGMMAR-YT--QADVIVVGLIGERGREVKDFIENILGAE--------GRARSVVIAAPADVSPLLRMQ 248 (455)
T ss_pred EECCCCCCccHHHHHHhC-CC--CCCEEEEEEEEECCeEHHHHHHhhcCcC--------CCceEEEEEECCCCCHHHHHH
Confidence 999999999999965543 32 3578889999999999999888875443 456999999999999999999
Q ss_pred HHHHHHHHHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCC--CCCceeeEEE
Q 008638 311 VGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT--KKGSITSVQA 388 (558)
Q Consensus 311 ~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~--~~GSIT~i~~ 388 (558)
++++|+|+|||||| +|+||||++||+||||+|+||||+++||+|+++||||++|+.|++|+|||++. ++||||+|++
T Consensus 249 ~~~~a~tiAEyfrd-~G~~Vll~~DslTr~A~A~rEisl~~ge~P~~~gypp~~f~~l~~l~ERag~~~~~~GSIT~i~t 327 (455)
T PRK07960 249 GAAYATRIAEDFRD-RGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFYT 327 (455)
T ss_pred HHHHHHHHHHHHHH-cCCCeEEEecchhHHHHHHHHHHHhcCCCCccccCCcchhhhhhHHHHHHhcCCCCCeeeeeEEE
Confidence 99999999999999 89999999999999999999999999999999999999999999999999985 6899999999
Q ss_pred EeecCCCCCCchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHH
Q 008638 389 IYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIA 468 (558)
Q Consensus 389 V~v~~dD~~dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~ 468 (558)
|++|+||++||||+++++|+||||||||+||++||||||||+.|+||+++ .+++++|++.+..+|++|+.|++++++|+
T Consensus 328 Vlv~~dD~~dpi~d~~~~i~dg~ivLsr~la~~g~yPAID~l~S~SR~~~-~~~~~~~~~~~~~~r~~l~~Y~~~~dli~ 406 (455)
T PRK07960 328 VLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMT-ALIDEQHYARVRQFKQLLSSFQRNRDLVS 406 (455)
T ss_pred EEEcCCCCCcchHHHhhhhcceEEEECHHHHhCCCCCccCcCcccCcCcc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999984 67899999999999999999999999999
Q ss_pred HhcCCCCChh-HHHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHH
Q 008638 469 ILGMDELSED-DKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVL 524 (558)
Q Consensus 469 i~G~~~l~~~-~~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il 524 (558)
+++|..+++. .+.++.+.++|++||+|++++ ..+++|+++.+..++
T Consensus 407 ig~y~~G~d~~~D~ai~~~~~i~~fl~Q~~~e----------~~~~~~~~~~l~~~~ 453 (455)
T PRK07960 407 VGAYAKGSDPMLDKAIALWPQLEAFLQQGIFE----------RADWEDSLQALERIF 453 (455)
T ss_pred hcCccCCCCHHHHHHHHhHHHHHHHhCCCCCC----------CcCHHHHHHHHHHhh
Confidence 9999776644 445778889999999999888 778999999988875
No 35
>PRK05922 type III secretion system ATPase; Validated
Probab=100.00 E-value=1.1e-96 Score=788.02 Aligned_cols=413 Identities=26% Similarity=0.392 Sum_probs=375.7
Q ss_pred CceeeEEEEECCeEEEEeCCCCchhhhceEEec-c-CceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceec
Q 008638 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVD-H-SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVP 162 (558)
Q Consensus 85 ~~~G~V~~V~G~VVdv~F~~gLp~i~~~Lev~~-~-~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~Vp 162 (558)
..+|+|++|.|++++++ |+...++++.... . +....+||+.+ .++.+.++++++++||+.|+.|..||++++||
T Consensus 18 ~~~g~v~~v~g~~i~~~---g~~~~~ge~~~i~~~~~~~~~~eVv~~-~~~~~~l~~~~~~~gi~~G~~V~~~~~~~~v~ 93 (434)
T PRK05922 18 RECGLLSRVSGNLLEAQ---GLSACLGELCQISLSKSPPILAEVIGF-HNRTTLLMSLSPIHYVALGAEVLPLRRPPSLH 93 (434)
T ss_pred eeeeEEEEEEccEEEEE---eCCCCCCCEEEEecCCCCeeEEEEEEE-eCCeEEEEEccCCCCCCCCCEEEeCCCCcEEE
Confidence 46899999999999998 7666666755542 1 23477899987 66677799999999999999999999999999
Q ss_pred cCccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHH
Q 008638 163 VGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242 (558)
Q Consensus 163 VG~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L 242 (558)
+|+++||||+|++|+|||+.+++....++|++.++|++++|.+++++|+||||+||.|+|+++|||++|||++|+|||+|
T Consensus 94 vg~~llGrv~d~~G~pld~~~~~~~~~~~pi~~~~~~~~~R~~i~e~l~TGIr~ID~ll~I~~GqrigI~G~nG~GKSTL 173 (434)
T PRK05922 94 LSDHLLGRVLDGFGNPLDGKEQLPKTHLKPLFSSPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSSL 173 (434)
T ss_pred cChhhcCCEeCCCCCccCCCCCCCccceeecccCCCChhhcCCcceecCCCceeecceEEEcCCcEEEEECCCCCChHHH
Confidence 99999999999999999998887777788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHh
Q 008638 243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF 322 (558)
Q Consensus 243 ~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyf 322 (558)
+..+++ +. +.+++||++||||++|+.++++++.+.. .+++|++|++|+|+||.+|++++++|+|+||||
T Consensus 174 L~~Ia~-~~--~~d~gvi~liGerg~ev~eyl~q~~~~~--------~~~rTVlv~atsd~~~~~r~~a~~~a~tiAEyf 242 (434)
T PRK05922 174 LSTIAK-GS--KSTINVIALIGERGREVREYIEQHKEGL--------AAQRTIIIASPAHETAPTKVIAGRAAMTIAEYF 242 (434)
T ss_pred HHHHhc-cC--CCCceEEEEeCCCCchHHHHHHHHHhhc--------cccceEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 865543 33 3578999999999999999998876543 235899999999999999999999999999999
Q ss_pred HHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCCCCchhh
Q 008638 323 RDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPA 402 (558)
Q Consensus 323 Rd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~dpip~ 402 (558)
|| +|+||||++||+||||+|+||||+++||||+++||||++|++|++|+||||+.++||||+|++|++++| ..||+++
T Consensus 243 rd-~G~~VLl~~DslTR~A~A~REisl~~ge~P~~~gyp~svfs~l~~l~ERag~~~~GSIT~~~tVl~~~~-~~dpi~d 320 (434)
T PRK05922 243 RD-QGHRVLFIMDSLSRWIAALQEVALARGETLSAHHYAASVFHHVSEFTERAGNNDKGSITALYAILHYPN-HPDIFTD 320 (434)
T ss_pred HH-cCCCEEEeccchhHHHHHHHHHHHhcCCCCCcCCcCchHHHHhHHHHHhhcCCCCcceeEEEEEEecCC-CCCcccc
Confidence 99 799999999999999999999999999999999999999999999999999988999999999999998 7899999
Q ss_pred hHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCChh-HHH
Q 008638 403 TTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSED-DKL 481 (558)
Q Consensus 403 ~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~-~~~ 481 (558)
++++||||||||||+|++++ |||||++.|+||+| +.++.++|++++.++|++|++|+|+|++|++++|+..++. -+.
T Consensus 321 ~~rsilDGhIvLsr~la~~~-~PAIDvl~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~edli~~G~y~~g~d~~~d~ 398 (434)
T PRK05922 321 YLKSLLDGHFFLTPQGKALA-SPPIDILTSLSRSA-RQLALPHHYAAAEELRSLLKAYHEALDIIQLGAYVPGQDAHLDR 398 (434)
T ss_pred chhhhcCcEEEEcHHHHhCC-CCCcCCccccccCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCHHHHH
Confidence 99999999999999999987 99999999999998 5556799999999999999999999999999999866533 346
Q ss_pred HHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHcc
Q 008638 482 TVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDG 526 (558)
Q Consensus 482 ~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G 526 (558)
++++.+.|++||+|++.+ +++++|+++.+.++++-
T Consensus 399 a~~~~~~i~~fl~Q~~~~----------~~~~~~~~~~l~~~~~~ 433 (434)
T PRK05922 399 AVKLLPSIKQFLSQPLSS----------YCALHNTLKQLEALLKH 433 (434)
T ss_pred HHHhHHHHHHHhCCCCCC----------CCCHHHHHHHHHHHHhc
Confidence 888888999999999876 89999999999999763
No 36
>PRK08149 ATP synthase SpaL; Validated
Probab=100.00 E-value=1.6e-96 Score=786.22 Aligned_cols=412 Identities=25% Similarity=0.401 Sum_probs=370.1
Q ss_pred ceeeEEEEECCeEEEEeCCCCchhhhceEEecc---CceeE--EeeeeecCCceEEEEEeccccCcccCceEEecCCCce
Q 008638 86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH---SVRLV--LEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPIT 160 (558)
Q Consensus 86 ~~G~V~~V~G~VVdv~F~~gLp~i~~~Lev~~~---~~~lv--~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~ 160 (558)
.+|+|++|.|++++++ +....++++..... +..+. +||+.+ .++.+.+++|+++.||..|++|..||++++
T Consensus 6 ~~g~v~~i~g~~i~~~---~~~~~~ge~~~i~~~~~~~~~~~~~evv~~-~~~~~~l~~~~~~~gi~~g~~v~~~~~~~~ 81 (428)
T PRK08149 6 RLAHPLRIQGPIIEAE---LPDVAIGEICEIRAGWHSNEVIARAQVVGF-QRERTILSLIGNAQGLSRQVVLKPTGKPLS 81 (428)
T ss_pred eeeEEEEEEeeEEEEE---ECCCCcCCEEEEeecCCCCceeeEEEEEEe-eCcEEEEEECCCccCCCCCCEEEEcCCcCE
Confidence 4699999999999998 44444555444321 22233 677776 666677999999999999999999999999
Q ss_pred eccCccccceEEEEecccccccC--CCc--ccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCC
Q 008638 161 VPVGRVTLGRIMNVIGEPIDEKG--DLK--TEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAG 236 (558)
Q Consensus 161 VpVG~~lLGRV~d~lG~PiD~~~--~i~--~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g 236 (558)
||||+++||||+|++|+|+|+.+ +.. ...++||++++|++++|.+++++|.||+++||.++|+++|||++|||++|
T Consensus 82 v~vg~~llGrv~d~~G~piD~~~~~~~~~~~~~~~~i~~~~~~~~~R~~i~e~l~tGi~aid~ll~i~~Gq~i~I~G~sG 161 (428)
T PRK08149 82 VWVGEALLGAVLDPTGKIVERFDAPPTVGPISEERVIDVAPPSYAERRPIREPLITGVRAIDGLLTCGVGQRMGIFASAG 161 (428)
T ss_pred EEeChhhcCCeeCCCCCCcCCCCCCcccccccceeehhccCCcchhccCccccccCCcEEEeeeeeEecCCEEEEECCCC
Confidence 99999999999999999999876 332 25678999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHH
Q 008638 237 VGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316 (558)
Q Consensus 237 ~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~ 316 (558)
+|||||+..+++ +. +.+++||++||+|++|++++++++.+.+ .++|+++|++|+|+||.+|++++|+|+
T Consensus 162 ~GKTTLl~~i~~-~~--~~dv~v~g~Ig~rg~ev~e~~~~~l~~~--------~~~~~~vV~~~sd~p~~~r~~a~~~a~ 230 (428)
T PRK08149 162 CGKTSLMNMLIE-HS--EADVFVIGLIGERGREVTEFVESLRASS--------RREKCVLVYATSDFSSVDRCNAALVAT 230 (428)
T ss_pred CChhHHHHHHhc-CC--CCCeEEEEEEeeCCccHHHHHHHHhhcc--------cccceEEEEECCCCCHHHHHhHHHHHH
Confidence 999999875544 32 3578889999999999999999887654 346999999999999999999999999
Q ss_pred HHHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCC
Q 008638 317 TVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDL 396 (558)
Q Consensus 317 tiAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~ 396 (558)
|+|||||| +||||||++||+||||+|+||||+++||||+++||||++|+.|++|+||+++.++||||+|++|++|+||+
T Consensus 231 tiAE~fr~-~G~~Vll~~DslTr~A~A~rEi~l~~ge~P~~~Gyp~~vfs~l~~l~ERag~~~~GSIT~~~tVl~~~dD~ 309 (428)
T PRK08149 231 TVAEYFRD-QGKRVVLFIDSMTRYARALRDVALAAGELPARRGYPASVFDSLPRLLERPGATLAGSITAFYTVLLESEEE 309 (428)
T ss_pred HHHHHHHH-cCCCEEEEccchHHHHHHHHHhHhhcCCCCcccccCccHHHHHHHHHHhccCCCCCCceEEEEEEecCCCC
Confidence 99999999 79999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCC-
Q 008638 397 TDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDEL- 475 (558)
Q Consensus 397 ~dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l- 475 (558)
+||||+++++|+||||+|||+||++||||||||+.|+||++ +.+++++|+++++++|++|++|+|+++++++++|...
T Consensus 310 ~dpi~d~~~~ilDg~ivLsr~La~~g~yPAIDvl~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~e~li~~G~y~~g~ 388 (428)
T PRK08149 310 PDPIGDEIRSILDGHIYLSRKLAAKGHYPAIDVLKSVSRVF-GQVTDPKHRQLAAAFRKLLTRLEELQLFIDLGEYRRGE 388 (428)
T ss_pred CCCchhhhheeccEEEEEcHHHHhCCCCCcccCccccccch-hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999999999999999999997 4778999999999999999999999999999776432
Q ss_pred ChhHHHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHH
Q 008638 476 SEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVL 524 (558)
Q Consensus 476 ~~~~~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il 524 (558)
+++.+.++.++++|++||+|++++ ++++++++..+..++
T Consensus 389 ~~~~d~ai~~~~~i~~fl~Q~~~~----------~~~~~~~~~~l~~~~ 427 (428)
T PRK08149 389 NADNDRAMDKRPALEAFLKQDVAE----------KSSFSDTLERLNEFA 427 (428)
T ss_pred CHHHHHHHHhHHHHHHHhCCCCCC----------CCCHHHHHHHHHHHh
Confidence 334556899999999999999988 889999999988775
No 37
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.3e-96 Score=770.79 Aligned_cols=423 Identities=26% Similarity=0.417 Sum_probs=399.3
Q ss_pred CceeeEEEEECCeEEEEeCCCCchhhhceEEeccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceeccC
Q 008638 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (558)
Q Consensus 85 ~~~G~V~~V~G~VVdv~F~~gLp~i~~~Lev~~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpVG 164 (558)
.+.|+|++|.+.++.|. ||.+++ ..|+..+. .-+.+++.+++++.|.++.+++...|+.|++|++||+.+.||||
T Consensus 26 ~~~g~V~sv~DgIa~v~---Gl~~~~-~~E~~ef~-~~v~G~alnle~d~VG~vi~g~~~~i~eG~~v~~Tg~i~~Vpvg 100 (504)
T COG0056 26 KEVGTVISVGDGIARVS---GLENVM-AGELVEFP-GGVKGMALNLEEDSVGAVILGDYSDIKEGDEVKRTGRILEVPVG 100 (504)
T ss_pred hccceEEEEecceEEEe---cCchhh-cCceEEec-CCcEEEEEeccccceeEEEecCCccccCCcEEEeeCceEEEecc
Confidence 46899999999999997 999886 45555554 45789999999999999999999999999999999999999999
Q ss_pred ccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHHHH
Q 008638 165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM 244 (558)
Q Consensus 165 ~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~~ 244 (558)
+++||||+|++|+|+|+++++....+.|++..+|..++|.++++||+||||+||+|+|||||||.+|+|+++||||.++.
T Consensus 101 ~~llGRVVn~lG~pidgkg~i~~~~~~~~e~~Apgv~~RksV~ePlqTGikaIDamiPIGRGQRELIIGDRQTGKTaIAi 180 (504)
T COG0056 101 EELLGRVVDALGNPIDGKGPIDATKTRPVEKKAPGVMDRKSVNEPLQTGIKAIDALIPIGRGQRELIIGDRQTGKTAIAI 180 (504)
T ss_pred hhhcceeecCCCCccCCCCCccccccCccccccCceecccccCchhhhhhHHHhhhcccCCCceEEEeccCcCCcchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHH
Q 008638 245 ELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD 324 (558)
Q Consensus 245 ~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd 324 (558)
+.|.||. ..+.+||||+||++.+.+..+++.|.++|.+ ++|++|++++++|+..+|.+||+||||||||||
T Consensus 181 dtIiNQk-~~~v~CIYVAIGQK~stva~vv~tL~e~gAm--------dyTiVV~AsASd~a~lqYLaPy~g~a~aE~f~~ 251 (504)
T COG0056 181 DTIINQK-GSGVKCIYVAIGQKRSTVANVVRTLEEHGAM--------DYTIVVAASASDSAPLQYLAPYAGCAMAEYFRD 251 (504)
T ss_pred HHHHhcc-cCCcEEEEEEcccchHHHHHHHHHHHHcCCc--------cceEEEEecCCcchhhhhhhhhhhhHHHHHHHh
Confidence 9999985 5567899999999999999999999998855 589999999999999999999999999999999
Q ss_pred hCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcC----CCCCceeeEEEEeecCCCCCCch
Q 008638 325 AEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT----TKKGSITSVQAIYVPADDLTDPA 400 (558)
Q Consensus 325 ~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~----~~~GSIT~i~~V~v~~dD~~dpi 400 (558)
+|+|||+++||||+||.||||+|++++|||++++|||++||.|++|+|||++ .++||||++|.+.+.++|++.+|
T Consensus 252 -~G~dvLIVyDDLsKhA~AYReiSLLlrRPPGREAyPGDVFYlHSrLLERAakl~~e~g~GSiTALPIIETqagDvSAyI 330 (504)
T COG0056 252 -NGKDVLIVYDDLSKHAVAYREISLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSITALPIIETQAGDVSAYI 330 (504)
T ss_pred -cCCeEEEEecCchHHHHHHHHHHHHhcCCCCccCCCCceeehhHHHHHHHHhhccccCCCceEeeeeEEeccCceeeec
Confidence 8999999999999999999999999999999999999999999999999987 47899999999999999999999
Q ss_pred hhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCChhHH
Q 008638 401 PATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDK 480 (558)
Q Consensus 401 p~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~~~ 480 (558)
|+|++||+||||+|+.+||++|+.||||+..|+||+++.++ -+...+++..+|..|++|+|++.+ +.+|.| |+++++
T Consensus 331 pTNVISITDGQIfl~t~LFn~G~rPAInvGlSVSRvGssAQ-~kamkkvag~lrl~laqYrel~af-sqf~sd-Ld~~T~ 407 (504)
T COG0056 331 PTNVISITDGQIFLETDLFNAGIRPAINVGLSVSRVGSAAQ-IKAMKKVAGSLRLILAQYRELEAF-SQFGSD-LDKATR 407 (504)
T ss_pred ccceEEecCCcEEeehhhhhcCCCccccCCceeeccchHHH-HHHHHHHHHHHHHHHHHHHHHHHH-Hhhcch-hCHHHH
Confidence 99999999999999999999999999999999999986554 366778899999999999999997 567865 999999
Q ss_pred HHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCccc
Q 008638 481 LTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQS 535 (558)
Q Consensus 481 ~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~ 535 (558)
..+++++++.+.|+|+.+. +++.++++-.++++..|.+|++|.+.
T Consensus 408 ~~l~~G~r~~ellkQ~~~~----------p~sv~~qv~ilya~~~G~ld~v~v~~ 452 (504)
T COG0056 408 KQLERGKRLTELLKQPQYS----------PLSVEEQVLILYAGTNGYLDDVPVEK 452 (504)
T ss_pred HHHHccHHHHHHhcCCCCC----------CccHHHHHHHHHHHhcCcccCCcHHH
Confidence 9999999999999999887 89999999999999999999999854
No 38
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=100.00 E-value=7.3e-94 Score=771.01 Aligned_cols=415 Identities=31% Similarity=0.496 Sum_probs=374.9
Q ss_pred CCceeeEEEEECCeEEEEeCCCCchhhhce-EEec--cCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCce
Q 008638 84 KGAIGQVCQVIGAVVDVRFDEGLPPILTAL-EVVD--HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPIT 160 (558)
Q Consensus 84 ~~~~G~V~~V~G~VVdv~F~~gLp~i~~~L-ev~~--~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~ 160 (558)
...+|+|++|.|+++++.++ ...++++ ++.. .+..+.+||+++.+ +.+++++|++++||++|++|..||++++
T Consensus 21 ~~~~G~v~~i~G~~v~~~~~---~~~~ge~~~i~~~~~~~~~~~eVi~~~~-~~v~l~~~~~t~gl~~G~~V~~tg~~~~ 96 (440)
T TIGR01026 21 VKRVGRVTKVKGLLIEAVGP---QASVGDLCLIERRGSEGRLVAEVVGFNG-EFVFLMPYEEVEGVRPGSKVLATGEGLS 96 (440)
T ss_pred cceeeEEEEEEeeEEEEEcC---CCCcCCEEEEeecCCCCcEEEEEEEecC-CEEEEEEccCCcCCCCCCEEEeCCCccE
Confidence 35679999999999999853 2334454 4421 12347889999854 7889999999999999999999999999
Q ss_pred eccCccccceEEEEecccccccC-CCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCCh
Q 008638 161 VPVGRVTLGRIMNVIGEPIDEKG-DLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 239 (558)
Q Consensus 161 VpVG~~lLGRV~d~lG~PiD~~~-~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GK 239 (558)
||||+++||||+|++|+|||+.+ ++.....+|++.++|++++|.++++++.||+|+||.++|+++|||++|||++|+||
T Consensus 97 v~vg~~llGRVid~~G~plD~~~~~~~~~~~~~i~~~~~~p~~R~~~~e~l~TGi~~iD~l~~i~~Gq~~~I~G~sG~GK 176 (440)
T TIGR01026 97 IKVGDGLLGRVLDGLGKPIDGKGKFLDNVETEGLITAPINPLKRAPIREILSTGVRSIDGLLTVGKGQRIGIFAGSGVGK 176 (440)
T ss_pred EEcChhhhhceecCCCcccCCCCCCCCCccccccccCCCChHHccCccccccceeeeeeeccccCCCcEEEEECCCCCCH
Confidence 99999999999999999999988 66566678999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHH
Q 008638 240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVA 319 (558)
Q Consensus 240 T~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiA 319 (558)
|+|+..++ ++. +.++.||++||||++|++++++++...+ .+++|++|++++|+||.+|++++++|+|+|
T Consensus 177 StLl~~I~-~~~--~~~~~vi~~iG~r~~ev~~~~~~~~~~~--------~l~~tvvv~~~~d~~p~~r~~~~~~a~t~A 245 (440)
T TIGR01026 177 STLLGMIA-RNT--EADVNVIALIGERGREVREFIEHDLGEE--------GLKRSVVVVATSDQSPLLRLKGAYVATAIA 245 (440)
T ss_pred HHHHHHHh-CCC--CCCEEEEEEEeecchHHHHHHHHHhccc--------ccceEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 99996554 333 3578899999999999999888765432 357999999999999999999999999999
Q ss_pred HHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCCCCc
Q 008638 320 EHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDP 399 (558)
Q Consensus 320 EyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~dp 399 (558)
||||| +|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||++..++||||+|+||++++||++||
T Consensus 246 E~frd-~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~dp 324 (440)
T TIGR01026 246 EYFRD-QGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNEP 324 (440)
T ss_pred HHHHH-CCCCEEEEEeChHHHHHHHHHHHHhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCcc
Confidence 99999 79999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred hhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCC-hh
Q 008638 400 APATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELS-ED 478 (558)
Q Consensus 400 ip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~-~~ 478 (558)
|++++++|+||||+|||+||++||||||||+.|+||++ +.+++++|+++++++|++|++|+|+++++++++|...+ ++
T Consensus 325 i~d~~~~i~dG~ivLsr~la~~~~~PAId~~~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~~~li~ig~y~~g~d~~ 403 (440)
T TIGR01026 325 IADSVRGILDGHIVLSRALAQRGHYPAIDVLASISRLM-TAIVSEEHRRAARKFRELLSKYKDNEDLIRIGAYQRGSDRE 403 (440)
T ss_pred hhhhhccccceEEEEecchhhCCccCccCCCcccccCc-cccCCHHHHHHHHHHHHHHHhhHHHHHHHHhhccccCCCHH
Confidence 99999999999999999999999999999999999997 77889999999999999999999999999998876432 34
Q ss_pred HHHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHc
Q 008638 479 DKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLD 525 (558)
Q Consensus 479 ~~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~ 525 (558)
.+.++.++++|++||+|+++. +++++++++.|.+++.
T Consensus 404 ~d~~i~~~~~i~~fL~Q~~~~----------~~~~~~~~~~l~~~~~ 440 (440)
T TIGR01026 404 LDFAIAKYPKLERFLKQGINE----------KVNFEESLQQLEEIFR 440 (440)
T ss_pred HHHHHHHHHHHHHHcCCCCCC----------CCCHHHHHHHHHHhhC
Confidence 445788999999999999887 8999999999998863
No 39
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=100.00 E-value=7.6e-94 Score=768.57 Aligned_cols=413 Identities=29% Similarity=0.496 Sum_probs=373.4
Q ss_pred ceeeEEEEECCeEEEEeCCCCchhhhceEEec-c-CceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceecc
Q 008638 86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVD-H-SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (558)
Q Consensus 86 ~~G~V~~V~G~VVdv~F~~gLp~i~~~Lev~~-~-~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpV 163 (558)
.+|+|++|.|++++|.++ ...++++.... . +..+..||+.+.++ .+.+++|++++||++|++|..||++++|||
T Consensus 5 ~~G~V~~v~g~~v~v~~~---~~~~ge~~~i~~~~~~~~~~eVi~~~~~-~~~l~~~~~~~gl~~G~~V~~tg~~~~v~v 80 (422)
T TIGR02546 5 VRGRVTEVSGTLLKAVLP---GARVGELCLIRRRDPSQLLAEVVGFTGD-EALLSPLGELHGISPGSEVIPTGRPLSIRV 80 (422)
T ss_pred eeEEEEEEECcEEEEEEC---CCCCCCEEEEeeCCCCeEEEEEEEEcCC-cEEEEEccCccCCCCCCEEEECCCCceEEe
Confidence 479999999999999854 22334433332 1 33588999999665 566999999999999999999999999999
Q ss_pred CccccceEEEEecccccccCCCcccc--cccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhH
Q 008638 164 GRVTLGRIMNVIGEPIDEKGDLKTEH--YLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTV 241 (558)
Q Consensus 164 G~~lLGRV~d~lG~PiD~~~~i~~~~--~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~ 241 (558)
|+++||||+|++|+|||+++++.... +|||+.++|++++|.+++++|+||+++||.++|+++|||++|||++|+|||+
T Consensus 81 g~~lLGrViD~~G~plD~~~~~~~~~~~~~pi~~~~~~~~~R~~i~~~l~tG~~~id~l~~i~~Gq~~~I~G~sG~GKSt 160 (422)
T TIGR02546 81 GEALLGRVLDGFGRPLDGKGELPAGEIETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKST 160 (422)
T ss_pred ChhhccCEeCCCCCcccCCCCCCCCCceeeeccCCCcCHHHccCcccccCCCceeehhhccccCCCEEEEECCCCCChHH
Confidence 99999999999999999998876653 6899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHH
Q 008638 242 LIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEH 321 (558)
Q Consensus 242 L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEy 321 (558)
|++.++. +. +.+.++|++||||++|+.++++++...+ .++++++|++++|+|+.+|++++|+|+++|||
T Consensus 161 Ll~~I~~-~~--~~~~~vi~~iG~~~~ev~~~~~~~~~~~--------~~~~tvvv~~~s~~p~~~r~~~~~~a~~~AE~ 229 (422)
T TIGR02546 161 LLGMIAR-GA--SADVNVIALIGERGREVREFIEHHLGEE--------GRKRSVLVVSTSDRPSLERLKAAYTATAIAEY 229 (422)
T ss_pred HHHHHhC-CC--CCCEEEEEEEccCCcCHHHHHHHHhccc--------cccceEEEeccccCCHHHHHHHHHHHHHHHHH
Confidence 9865544 33 3578999999999999998887765443 34699999999999999999999999999999
Q ss_pred hHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCCCCchh
Q 008638 322 FRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAP 401 (558)
Q Consensus 322 fRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~dpip 401 (558)
||| +|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+|||++.++||||+|+||++|+||++|||+
T Consensus 230 f~~-~g~~Vl~~~Dsltr~a~A~rei~l~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~GSIT~~~tv~~~~dd~~~pi~ 308 (422)
T TIGR02546 230 FRD-QGKRVLLMMDSLTRFARALREIGLAAGEPPARGGYPPSVFSSLPRLLERAGNGEKGSITALYTVLVEGDDMNDPIA 308 (422)
T ss_pred HHH-CCCcEEEEEeCchHHHHHHHHHHHhcCCCCcccccChhHHHHhHHHHHHhcCCCCCceeEEEEEeccCCCCCCCch
Confidence 999 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCC-ChhHH
Q 008638 402 ATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDEL-SEDDK 480 (558)
Q Consensus 402 ~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l-~~~~~ 480 (558)
+++++|+||||+|||+||++||||||||+.|+||++ +.+++++|++++.++|++|++|+|+++++++++|+.. +++.+
T Consensus 309 ~~~~~i~dg~i~Lsr~la~~g~yPAId~~~S~SR~~-~~~~~~~~~~~a~~~~~~l~~y~e~~~li~~g~y~~g~d~~~d 387 (422)
T TIGR02546 309 DEVRSILDGHIVLSRALAERNHYPAIDVLASLSRVM-SQVVSTEHRRAAGKLRRLLATYKEVELLIRLGEYQPGSDPETD 387 (422)
T ss_pred hhhhccccEEEEEcHHHHhCCCCCccCCccccccch-hhhCCHHHHHHHHHHHHHHHhhHHHHHHHHhcCCcCCCCHHHH
Confidence 999999999999999999999999999999999997 6778999999999999999999999999999877643 34456
Q ss_pred HHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHc
Q 008638 481 LTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLD 525 (558)
Q Consensus 481 ~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~ 525 (558)
.++.++++|++||+|+++. ++++++++..+.++++
T Consensus 388 ~~i~~~~~i~~fl~Q~~~~----------~~~~~~~~~~l~~~~~ 422 (422)
T TIGR02546 388 DAIDKIDAIRAFLRQSTDE----------YSPYEETLEQLHALVA 422 (422)
T ss_pred HHHHhHHHHHHHhCCCCCC----------CCCHHHHHHHHHHHhC
Confidence 7899999999999999876 8899999999998763
No 40
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.9e-93 Score=764.63 Aligned_cols=414 Identities=30% Similarity=0.428 Sum_probs=372.8
Q ss_pred CceeeEEEEECCeEEEEeCCCC--chhhhceEEecc-CceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCcee
Q 008638 85 GAIGQVCQVIGAVVDVRFDEGL--PPILTALEVVDH-SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITV 161 (558)
Q Consensus 85 ~~~G~V~~V~G~VVdv~F~~gL--p~i~~~Lev~~~-~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~V 161 (558)
..+|+|++|.|.++++. |+ ...++++..... +....+||+.+ .++.+.+++++++.||+.|+.|.. ++++++
T Consensus 25 ~~~G~v~~v~g~~~~~~---g~~~~~~iGe~~~i~~~~~~~~~eVv~~-~~~~~~l~~~~~~~gi~~g~~v~~-~~~~~v 99 (450)
T PRK06002 25 RIGGTVSEVTASHYRVR---GLSRFVRLGDFVAIRADGGTHLGEVVRV-DPDGVTVKPFEPRIEIGLGDAVFR-KGPLRI 99 (450)
T ss_pred ceeEEEEEEeceEEEEE---cCccCCCCCCEEEEECCCCcEEEEEEEE-eCCeEEEEEccCCcCCCCCCEEEe-CCCcee
Confidence 45799999999999997 77 345556444432 22467788877 666777999999999999999999 678999
Q ss_pred ccCccccceEEEEecccccccCCCcccc-cccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChh
Q 008638 162 PVGRVTLGRIMNVIGEPIDEKGDLKTEH-YLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240 (558)
Q Consensus 162 pVG~~lLGRV~d~lG~PiD~~~~i~~~~-~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT 240 (558)
|+|+++||||+|++|+|||+.+++...+ ++||++++|++++|..+++++.|||++||.|.||++|||++|||++|+|||
T Consensus 100 ~vg~~llGRV~d~~G~piDg~~~~~~~~~~~~i~~~~p~~~~r~~v~~~l~TGi~aID~L~~I~~Gqri~I~G~SGsGKT 179 (450)
T PRK06002 100 RPDPSWKGRVINALGEPIDGLGPLAPGTRPMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLCAGQRIGIFAGSGVGKS 179 (450)
T ss_pred ecCcccccCEECCCCcCCCCCCCCCCCcceeeccCCCCCCeEeecceEEcCCCcEEeeeeceecCCcEEEEECCCCCCHH
Confidence 9999999999999999999988876544 589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHH
Q 008638 241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE 320 (558)
Q Consensus 241 ~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAE 320 (558)
+|+..+ ... .+.+..+|+++|||++|+.++.++.... .+++++.|++|+|+||.+|++++|+|+|+||
T Consensus 180 TLL~~I-a~l--~~pd~gvv~liGergrev~e~~~~~l~~---------~r~rtI~vV~qsd~~~~~r~~~~~~a~~iAE 247 (450)
T PRK06002 180 TLLAML-ARA--DAFDTVVIALVGERGREVREFLEDTLAD---------NLKKAVAVVATSDESPMMRRLAPLTATAIAE 247 (450)
T ss_pred HHHHHH-hCC--CCCCeeeeeecccCCccHHHHhHHHHHH---------hhCCeEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 999644 332 2357789999999999999887765432 1358999999999999999999999999999
Q ss_pred HhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcC--CCCCceeeEEEEeecCCCCCC
Q 008638 321 HFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT--TKKGSITSVQAIYVPADDLTD 398 (558)
Q Consensus 321 yfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~--~~~GSIT~i~~V~v~~dD~~d 398 (558)
|||| +|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||+++ .++||||+|+||++|+||++|
T Consensus 248 yfrd-~G~~Vll~~DslTr~A~A~rEisl~~ge~P~~~gyp~~vf~~l~~l~ERag~~~~~~GSIT~~~tvl~~~dd~~d 326 (450)
T PRK06002 248 YFRD-RGENVLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVDGDDHND 326 (450)
T ss_pred HHHH-cCCCEEEeccchHHHHHHHHHHHHhcCCCCccccCCccHHHHhhHHHHHhccCCCCCeeeeEEEEEEecCCCCCC
Confidence 9999 7999999999999999999999999999999999999999999999999997 458999999999999999999
Q ss_pred chhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCChh
Q 008638 399 PAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSED 478 (558)
Q Consensus 399 pip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~ 478 (558)
|||+++++|+||||||||+||++||||||||+.|+||+++. ++.++|++++.++|++|++|+|++++|++++|+.+++.
T Consensus 327 pI~d~~~~i~Dg~ivLsr~la~~g~~PAIDv~~S~SR~~~~-~~~~~~~~~a~~~r~~la~y~e~e~li~ig~y~~G~d~ 405 (450)
T PRK06002 327 PVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISRLARH-AWTPEQRKLVSRLKSMIARFEETRDLRLIGGYRAGSDP 405 (450)
T ss_pred ccHHHHHhhcceEEEEcHHHHhCCCCCccCCccccCccccc-ccCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCh
Confidence 99999999999999999999999999999999999999854 56899999999999999999999999999999999764
Q ss_pred H-HHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHcccc
Q 008638 479 D-KLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKY 528 (558)
Q Consensus 479 ~-~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~ 528 (558)
+ +.+++++++|++||+|+..+ +++ ++++..+..++.|..
T Consensus 406 ~~D~ai~~~~~i~~fL~Q~~~~----------~~~-~~~~~~l~~~~~~~~ 445 (450)
T PRK06002 406 DLDQAVDLVPRIYEALRQSPGD----------PPS-DDAFADLAAALKGAA 445 (450)
T ss_pred HHHHHHHhHHHHHHHhCCCCCC----------CCC-HHHHHHHHHHHhhHh
Confidence 3 46999999999999998776 788 999999999999854
No 41
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.4e-93 Score=764.86 Aligned_cols=415 Identities=24% Similarity=0.397 Sum_probs=374.9
Q ss_pred CCceeeEEEEECCeEEEEeCCCCchhhhceEEe-ccCc-eeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCcee
Q 008638 84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVV-DHSV-RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITV 161 (558)
Q Consensus 84 ~~~~G~V~~V~G~VVdv~F~~gLp~i~~~Lev~-~~~~-~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~V 161 (558)
-..+|+|++|.|.++++. |+...++++... ..+. ....||+.+ .++.+.+++|++++||++|++|..||++++|
T Consensus 15 ~~~~G~v~~v~g~~~~~~---~~~~~~ge~~~i~~~~~~~~~~eVv~~-~~~~~~l~~~~~~~gi~~g~~v~~~~~~~~v 90 (434)
T PRK07196 15 ARVAGRLVRVTGLLLESV---GCRLAIGQRCRIESVDETFIEAQVVGF-DRDITYLMPFKHPGGVLGGARVFPSEQDGEL 90 (434)
T ss_pred cceeeEEEEEEcCEEEEe---cCCCCcCCEEEEEeCCCceEEEEEEEe-cCCEEEEEECCCccCCCCCCEEEECCCccEE
Confidence 345799999999999997 655556665544 2122 478899998 5556669999999999999999999999999
Q ss_pred ccCccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhH
Q 008638 162 PVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTV 241 (558)
Q Consensus 162 pVG~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~ 241 (558)
|||+++||||+|++|+|||+++++.....+|++.++|++++|.++++||+|||++||.++|+++|||++|||++|+||||
T Consensus 91 ~vg~~llGrv~d~~G~pld~~~~~~~~~~~~~~~~~~~p~~R~~~~~~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKST 170 (434)
T PRK07196 91 LIGDSWLGRVINGLGEPLDGKGQLGGSTPLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSV 170 (434)
T ss_pred EcCccccCCeeCcCCCCcCCCCCCCCCceeeccCCCCChHHhcccccccccceeeccceEeEecceEEEEECCCCCCccH
Confidence 99999999999999999999988766677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHH
Q 008638 242 LIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEH 321 (558)
Q Consensus 242 L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEy 321 (558)
|+.. |.++.+ .++.|+++||+|++|+.+++.+..... .+.|++++++++|+|+..|++++++++++|||
T Consensus 171 Ll~~-I~g~~~--~dv~vig~IGerg~ev~ef~~~~l~~~--------gl~rsvvv~~~~d~s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 171 LLGM-ITRYTQ--ADVVVVGLIGERGREVKEFIEHSLQAA--------GMAKSVVVAAPADESPLMRIKATELCHAIATY 239 (434)
T ss_pred HHHH-HhcccC--CCeEEEEEEeeecHHHHHHHHHHhhhc--------ccceEEEEEecCCCChhhhHHHHHHHHHHHHH
Confidence 9954 444433 467888999999999999886543221 24589999999999999999999999999999
Q ss_pred hHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCC-CCceeeEEEEeecCCCCCCch
Q 008638 322 FRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTK-KGSITSVQAIYVPADDLTDPA 400 (558)
Q Consensus 322 fRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~-~GSIT~i~~V~v~~dD~~dpi 400 (558)
||+ +|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.. +||||+||||++|+||++|||
T Consensus 240 fr~-~g~~Vll~~Dsltr~a~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi 318 (434)
T PRK07196 240 YRD-KGHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPI 318 (434)
T ss_pred hhh-ccCCEEEeecchhHHHhhhhHHHHhcCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCch
Confidence 999 799999999999999999999999999999999999999999999999998864 799999999999999999999
Q ss_pred hhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCC-hhH
Q 008638 401 PATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELS-EDD 479 (558)
Q Consensus 401 p~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~-~~~ 479 (558)
|+++++|+||||||||+||++||||||||+.|+||++ +.+++++|++++.++|++|++|+|+++++++++|.... ++.
T Consensus 319 ~d~~~~ilDG~ivLsr~la~~g~yPAIDvl~S~SR~~-~~~~~~~~~~~a~~~r~~~a~y~e~~~li~~g~y~~g~d~~~ 397 (434)
T PRK07196 319 VDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCM-SQVIGSQQAKAASLLKQCYADYMAIKPLIPLGGYVAGADPMA 397 (434)
T ss_pred hHhhhhhcceEEEEcHHHHhCCCCCccCCccccCccc-hhccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence 9999999999999999999999999999999999998 57789999999999999999999999999999876644 446
Q ss_pred HHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHc
Q 008638 480 KLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLD 525 (558)
Q Consensus 480 ~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~ 525 (558)
+.+++++++|++||+|++++ ..+++|+++.+.+++.
T Consensus 398 d~ai~~~~~i~~fL~Q~~~e----------~~~~~~~~~~l~~~~~ 433 (434)
T PRK07196 398 DQAVHYYPAITQFLRQEVGH----------PALFSASVEQLTGMFP 433 (434)
T ss_pred HHHHHhHHHHHHHhCCCCCC----------CCCHHHHHHHHHHHhc
Confidence 78999999999999999888 8899999999998864
No 42
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.4e-90 Score=745.23 Aligned_cols=416 Identities=27% Similarity=0.434 Sum_probs=373.7
Q ss_pred cCCceeeEEEEECCeEEEEeCCCCchhhhce-EEec--cC-ceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCC
Q 008638 83 GKGAIGQVCQVIGAVVDVRFDEGLPPILTAL-EVVD--HS-VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSP 158 (558)
Q Consensus 83 ~~~~~G~V~~V~G~VVdv~F~~gLp~i~~~L-ev~~--~~-~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~ 158 (558)
....+|+|++|.|++++++++. ..++++ .+.. .+ ..+.+||+++.+++ +.+++|++++||++|++|..||++
T Consensus 15 ~~~~~G~v~~i~G~~i~~~~~~---~~ige~~~i~~~~~~~~~~~~EVi~~~~~~-~~l~~~~~~~gl~~g~~V~~tg~~ 90 (438)
T PRK07721 15 PYKRYGKVSRVIGLMIESKGPE---SSIGDVCYIHTKGGGDKAIKAEVVGFKDEH-VLLMPYTEVAEIAPGCLVEATGKP 90 (438)
T ss_pred ccceecEEEEEECcEEEEEECC---CCchheEEEEecCCCCceEEEEEEEEcCCE-EEEEEccCccCCCCCCEEEECCCc
Confidence 3456899999999999999652 223443 3321 11 14889999997776 679999999999999999999999
Q ss_pred ceeccCccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCC
Q 008638 159 ITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVG 238 (558)
Q Consensus 159 ~~VpVG~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~G 238 (558)
++||||+++||||+|++|+|||+.+......++|++.++|++++|.+++++|+||+++||.++|+++||+++|+|++|+|
T Consensus 91 ~~v~vg~~llGRv~d~~G~plD~~~~~~~~~~~~i~~~~p~p~~R~~i~~~l~tg~~vid~l~~i~~Gq~i~I~G~sG~G 170 (438)
T PRK07721 91 LEVKVGSGLIGQVLDALGEPLDGSALPKGLAPVSTDQDPPNPLKRPPIREPMEVGVRAIDSLLTVGKGQRVGIFAGSGVG 170 (438)
T ss_pred cEEEechhhcCCEECcCCCccCCCCCCCccccCCccCCCCChhhccCcccccccchhhhheeeeecCCcEEEEECCCCCC
Confidence 99999999999999999999998775444467899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHH
Q 008638 239 KTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV 318 (558)
Q Consensus 239 KT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~ti 318 (558)
||+|+..++ ++. +.+..+++++|||++|+++++++.... ..++++++|++|+|+||.+|++++|+|+|+
T Consensus 171 KStLl~~I~-~~~--~~~~gvI~~~Gerg~ev~e~~~~~l~~--------~~l~r~v~vv~~~~~~~~~r~~~~~~a~~i 239 (438)
T PRK07721 171 KSTLMGMIA-RNT--SADLNVIALIGERGREVREFIERDLGP--------EGLKRSIVVVATSDQPALMRIKGAYTATAI 239 (438)
T ss_pred HHHHHHHHh-ccc--CCCeEEEEEEecCCccHHHHHHhhcCh--------hhhcCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 999996554 433 346789999999999998887763221 135689999999999999999999999999
Q ss_pred HHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCCCC
Q 008638 319 AEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTD 398 (558)
Q Consensus 319 AEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~d 398 (558)
|||||| +|+||||++||+||||+|+||||+++||||++.||||++|+.+++|+||+++.++||||+|+||+++++|++|
T Consensus 240 AEyfr~-~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e 318 (438)
T PRK07721 240 AEYFRD-QGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE 318 (438)
T ss_pred HHHHHH-CCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc
Confidence 999999 7999999999999999999999999999999999999999999999999997778999999999999999999
Q ss_pred chhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCC-h
Q 008638 399 PAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELS-E 477 (558)
Q Consensus 399 pip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~-~ 477 (558)
|++++++.++||||+||++|+++||||||||+.|+||++ +.+++++|+++++++|++|++|+|+++++++++|.+++ +
T Consensus 319 ~i~d~v~~i~dG~Ivls~~la~~g~~PAIdv~~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~~~li~~g~y~~g~~~ 397 (438)
T PRK07721 319 PIADTVRGILDGHFVLDRQLANKGQYPAINVLKSVSRVM-NHIVSPEHKEAANRFRELLSTYQNSEDLINIGAYKRGSSR 397 (438)
T ss_pred hhhhhEEEecCEEEEEeccHHHCCCCCccCCcccccccc-cccCCHHHHHHHHHHHHHHHHhHHHHHHHHhhCCcCCCCH
Confidence 999999999999999999999999999999999999997 46889999999999999999999999999999999887 3
Q ss_pred hHHHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHc
Q 008638 478 DDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLD 525 (558)
Q Consensus 478 ~~~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~ 525 (558)
+.+.+++++++|++||+|+++. +.++++++..+.+++.
T Consensus 398 ~~d~a~~~~~~~~~fl~Q~~~~----------~~~~~~~~~~l~~~~~ 435 (438)
T PRK07721 398 EIDEAIQFYPQIISFLKQGTDE----------KATFEESIQALLSLFG 435 (438)
T ss_pred HHHHHHHhHHHHHHHhCCCCCC----------CCCHHHHHHHHHHHHh
Confidence 4556899999999999999888 7899999999998874
No 43
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=6.1e-90 Score=736.43 Aligned_cols=410 Identities=27% Similarity=0.414 Sum_probs=372.7
Q ss_pred CCceeeEEEEECCeEEEEeCCCCchhhhceEEeccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceecc
Q 008638 84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (558)
Q Consensus 84 ~~~~G~V~~V~G~VVdv~F~~gLp~i~~~Lev~~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpV 163 (558)
-..+|+|++|.|.++++. |+....+++.... +..+.+||+.+.++. +.++++++++||++|+.|..||++++|||
T Consensus 19 ~~~~g~v~~~~g~~~~~~---g~~~~ige~~~i~-~~~~~~eV~~~~~~~-~~~~~~~~~~gi~~g~~v~~~~~~~~v~v 93 (432)
T PRK06793 19 YTKVGKVHSVQEQFFVAK---GPKAKIGDVCFVG-EHNVLCEVIAIEKEN-NMLLPFEQTEKVCYGDSVTLIAEDVVIPR 93 (432)
T ss_pred cceeeEEEEEEEEEEEEE---cCCCCcCCEEEEC-CCCEEEEEEEecCCc-EEEEEccCccCCCCCCEEEECCCccEEEc
Confidence 355799999999999997 7655666655443 334788999986655 57999999999999999999999999999
Q ss_pred CccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHHH
Q 008638 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243 (558)
Q Consensus 164 G~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~ 243 (558)
|+++||||+|++|+|+|+++++...+.+|++.++|++++|..+++++.||||+||.++|+++|||++|||++|+|||+|+
T Consensus 94 g~~~lGrV~d~~G~piD~~~~~~~~~~~~i~~~~~~~~~r~~i~~~l~TGiraID~ll~I~~Gqri~I~G~sG~GKTtLl 173 (432)
T PRK06793 94 GNHLLGKVLSANGEVLNEEAENIPLQKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTLL 173 (432)
T ss_pred CHhhccCEECcCCccCCCCCCCCCcccccccCCCCCchheechhhccCCCCEEEeccceecCCcEEEEECCCCCChHHHH
Confidence 99999999999999999987765667789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCEEEEEEecCCchhHHHHHHH-HHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHh
Q 008638 244 MELINNVAKAHGGFSVFAGVGERTREGNDLYRE-MIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF 322 (558)
Q Consensus 244 ~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e-~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyf 322 (558)
..++.+. + .+..+++++|||++|+.|+++. +.+. .++++++|++++|+||++|++++++|+++||||
T Consensus 174 ~~Ia~~~-~--~~~gvI~~iGerg~ev~e~~~~~l~~~---------gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyf 241 (432)
T PRK06793 174 GMIAKNA-K--ADINVISLVGERGREVKDFIRKELGEE---------GMRKSVVVVATSDESHLMQLRAAKLATSIAEYF 241 (432)
T ss_pred HHHhccC-C--CCeEEEEeCCCCcccHHHHHHHHhhhc---------ccceeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 7776653 2 4678899999999999998774 3332 346899999999999999999999999999999
Q ss_pred HHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCCCCchhh
Q 008638 323 RDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPA 402 (558)
Q Consensus 323 Rd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~dpip~ 402 (558)
|| +|+||||++||+||||+|+|||++++||+|+. |||+++|+.|++|+||+++.++||||++++|++|+||++||||+
T Consensus 242 r~-~G~~VLlilDslTr~a~A~reisl~~~e~p~~-G~~~~~~s~l~~L~ERag~~~~GSiT~~~tvlv~~dD~~dpI~d 319 (432)
T PRK06793 242 RD-QGNNVLLMMDSVTRFADARRSVDIAVKELPIG-GKTLLMESYMKKLLERSGKTQKGSITGIYTVLVDGDDLNGPVPD 319 (432)
T ss_pred HH-cCCcEEEEecchHHHHHHHHHHHHHhcCCCCC-CeeeeeeccchhHHHHhccCCCcceEEEEEEEecCCCCCCcchH
Confidence 99 89999999999999999999999999999997 99999999999999999999999999999999999999999999
Q ss_pred hHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCChhHH-H
Q 008638 403 TTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDK-L 481 (558)
Q Consensus 403 ~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~~~-~ 481 (558)
++++|+||||||||+||++||||||||+.|+||++ +.+++++|++++..+|++|++|+|+++++++++|.+.++.+. .
T Consensus 320 ~~~si~DG~ivLsr~la~~g~~PAIDv~~S~SR~~-~~~~~~~~~~~a~~~r~~la~y~e~e~~i~~g~y~~g~~~~~d~ 398 (432)
T PRK06793 320 LARGILDGHIVLKRELATLSHYPAISVLDSVSRIM-EEIVSPNHWQLANEMRKILSIYKENELYFKLGTIQENAENAYIF 398 (432)
T ss_pred HhhhhcceEEEEcHHHHhCCCCCccCCCcccCcCc-cccCCHHHHHHHHHHHHHHHhChHHHHHHHhCCccCCCCHHHHH
Confidence 99999999999999999999999999999999997 578899999999999999999999999999999998875433 4
Q ss_pred HHH-HHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHH
Q 008638 482 TVA-RARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGV 523 (558)
Q Consensus 482 ~v~-~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~i 523 (558)
++. +.++|++||+|+... +++++++++.+..+
T Consensus 399 ai~~~~~~i~~fl~Q~~~~----------~~~~~~~~~~l~~~ 431 (432)
T PRK06793 399 ECKNKVEGINTFLKQGRSD----------SFQFDDIVEAMHHI 431 (432)
T ss_pred HHHHhHHHHHHHhCCCCCC----------CCCHHHHHHHHHhh
Confidence 777 999999999998777 78999999888765
No 44
>PRK06315 type III secretion system ATPase; Provisional
Probab=100.00 E-value=3.7e-90 Score=739.92 Aligned_cols=415 Identities=29% Similarity=0.486 Sum_probs=376.1
Q ss_pred CCceeeEEEEECCeEEEEeCCCCchhhhceEEeccCc--eeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCcee
Q 008638 84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITV 161 (558)
Q Consensus 84 ~~~~G~V~~V~G~VVdv~F~~gLp~i~~~Lev~~~~~--~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~V 161 (558)
...+|+|++|.|+++++.+ .+..++++.....+. ...+||+.+.+ +.+.+++|+++.||.+|+.|..||++++|
T Consensus 21 ~~~~G~v~~i~g~~~~~~~---~~~~~ge~~~i~~~~~~~~~~eVv~~~~-~~~~l~~~~~~~gi~~g~~V~~~g~~~~v 96 (442)
T PRK06315 21 TTVVGRITEVVGMLIKAVV---PDVRVGEVCLVKRHGMEPLVTEVVGFTQ-NFVFLSPLGELTGVSPSSEVIPTGLPLHI 96 (442)
T ss_pred ceeccEEEEEECCEEEEEE---CCcccCCEEEEecCCCCEEEEEEEEEcC-CeEEEEEccCCcCCCCCCEEEeCCCccEE
Confidence 3457999999999999984 333445544332222 47889999855 77889999999999999999999999999
Q ss_pred ccCccccceEEEEecccccc--cCCCc-ccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCC
Q 008638 162 PVGRVTLGRIMNVIGEPIDE--KGDLK-TEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVG 238 (558)
Q Consensus 162 pVG~~lLGRV~d~lG~PiD~--~~~i~-~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~G 238 (558)
|||+++||||+|++|+|||+ ++++. ...+||++.++|++++|.++++||+||||+||.++|+++|||++|||++|+|
T Consensus 97 ~vg~~llGrv~d~~G~pld~~~~~~~~~~~~~~~i~~~~~~~~~R~~~~e~l~TGi~aID~~l~i~~Gq~i~I~G~sG~G 176 (442)
T PRK06315 97 RAGNGLLGRVLNGLGEPIDTETKGPLENVDETYPIFRAPPDPLHRAKLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVG 176 (442)
T ss_pred EecccccCCEEeccCcccccccCCCcccccceeeeecCCCChHHcccccccccceEEEEeccccccCCcEEEEECCCCCC
Confidence 99999999999999999998 77764 4467899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHH
Q 008638 239 KTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV 318 (558)
Q Consensus 239 KT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~ti 318 (558)
||+|+..++.+... .+..|+++||||++|+.+++.+.... ..++++++|++|+++||..|++.+++|+++
T Consensus 177 KStLl~~I~~~~~~--~~~~vi~liGerg~ev~~~~~~~l~~--------~g~~~svvvvats~q~p~~rlnp~~va~~I 246 (442)
T PRK06315 177 KSSLLGMIARNAEE--ADVNVIALIGERGREVREFIEGDLGE--------EGMKRSVIVVSTSDQSSQLRLNAAYVGTAI 246 (442)
T ss_pred cchHHHHhhccccc--CCceEEEEECCCchHHHHHHHHHHHh--------cCCceEEEEEeCCCCCHHHHhhHHHHHHHH
Confidence 99999766655422 35678999999999999888764322 134689999999999999999999999999
Q ss_pred HHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCCCC
Q 008638 319 AEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTD 398 (558)
Q Consensus 319 AEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~d 398 (558)
|||||+ +|+|||+++|++|||++|+|||++++|+||++.||||++|+.|++|+||||+.++||||+||||++++||++|
T Consensus 247 AE~~r~-~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS~l~~llERag~~~~GSITai~tVl~~gdD~~d 325 (442)
T PRK06315 247 AEYFRD-QGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERSGASDKGTITAFYTVLVAGDDMNE 325 (442)
T ss_pred HHHHHH-cCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhhHhHHHHHHhcCCCCcceeeeEEEEecCCCCCc
Confidence 999999 7999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCCh-
Q 008638 399 PAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSE- 477 (558)
Q Consensus 399 pip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~- 477 (558)
|||+++++|+||||+|||+||++||||||||+.|+||++ +.+++++|++++.++|++|++|+|+++++++++|.+.++
T Consensus 326 pi~d~~~~i~dg~ivLsr~la~~g~~Paidv~~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~e~li~~g~y~~g~d~ 404 (442)
T PRK06315 326 PVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLL-TAIVPEEQRRIIGKAREVLAKYKANEMLIRIGEYRRGSDR 404 (442)
T ss_pred ccHHHhhhhcceEEEEeccHHHcCCCCCccchhhhcccc-hhcCCHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcCCCCH
Confidence 999999999999999999999999999999999999997 577899999999999999999999999999999988876
Q ss_pred hHHHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHH
Q 008638 478 DDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVL 524 (558)
Q Consensus 478 ~~~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il 524 (558)
+.+.+++++++|++||+|++++ +++++++++.+..++
T Consensus 405 ~~d~ai~~~~~i~~fL~Q~~~e----------~~~~~~~~~~l~~~~ 441 (442)
T PRK06315 405 EVDFAIDHIDKLNRFLKQDIHE----------KTNYEEAAQQLRAIF 441 (442)
T ss_pred HHHHHHHHHHHHHHHhCCCCCC----------CCCHHHHHHHHHHHh
Confidence 5778999999999999999888 889999999998875
No 45
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=100.00 E-value=1.1e-90 Score=702.90 Aligned_cols=270 Identities=30% Similarity=0.475 Sum_probs=256.0
Q ss_pred CceeccCccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCC
Q 008638 158 PITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGV 237 (558)
Q Consensus 158 ~~~VpVG~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~ 237 (558)
+++||||+++||||+|++|+|||+++++...++|||+.++|++++|.++++||+||||+||+|+|||||||+||||++|+
T Consensus 1 ~~~Vpvg~~lLGRVvd~lG~piD~~~~~~~~~~~~i~~~ap~~~~R~~i~e~l~TGIkaID~l~pig~GQR~gIfgg~Gv 80 (276)
T cd01135 1 TLKVPVSEDMLGRIFNGSGKPIDGGPEILAEEYLDINGPPINPVARIYPEEMIQTGISAIDGMNTLVRGQKIPIFSGSGL 80 (276)
T ss_pred CcEEECChhhcCCEECCCCCCCCCCCCCCCCceeeccCCCcCchhcCCcccccccCcEeeecccccccCCEEEeecCCCC
Confidence 47899999999999999999999998887778899999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHh----hcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHH
Q 008638 238 GKTVLIMELINNVAK----AHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313 (558)
Q Consensus 238 GKT~L~~~~i~n~a~----~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ 313 (558)
|||+|+.+|+++ ++ .+.++|||++||||+||+.||+++|.+.+++ +||++|++|+|+||++|++++|
T Consensus 81 GKt~L~~~i~~~-~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l--------~~tv~v~~t~~~~~~~r~~a~~ 151 (276)
T cd01135 81 PHNELAAQIARQ-AGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGAL--------ERVVLFLNLANDPTIERIITPR 151 (276)
T ss_pred ChhHHHHHHHHh-hhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCc--------ceEEEEEecCCCCHHHHHHHHH
Confidence 999999986655 33 2358999999999999999999999887644 5999999999999999999999
Q ss_pred HHHHHHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCC--CCCceeeEEEEee
Q 008638 314 TGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT--KKGSITSVQAIYV 391 (558)
Q Consensus 314 ta~tiAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~--~~GSIT~i~~V~v 391 (558)
+|+|+||||||++|+||||+|||+||||+|+||||+++||||+++||||++|++|++|+|||++. ++||||+||+|++
T Consensus 152 ~a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~rEisl~~gepP~~~gyp~~vf~~~~~l~ERag~~~~~~GSITa~~~V~~ 231 (276)
T cd01135 152 MALTTAEYLAYEKGKHVLVILTDMTNYAEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRNGSITQIPILTM 231 (276)
T ss_pred HHHHHHHHHHhccCCeEEEEEcChhHHHHHHHHHHhccCCCCCccCcCccHHHHhhHHheecccCCCCCeeEEEEEEEEc
Confidence 99999999999449999999999999999999999999999999999999999999999999986 4799999999999
Q ss_pred cCCCCCCchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccc
Q 008638 392 PADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRM 436 (558)
Q Consensus 392 ~~dD~~dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~ 436 (558)
|+||++||||+++++||||||||||+||++||||||||+.|+||+
T Consensus 232 ~~dD~~dpi~~~~~si~DG~ivLsr~la~~g~~PAID~l~S~SR~ 276 (276)
T cd01135 232 PNDDITHPIPDLTGYITEGQIVLDRQLHNRGIYPPINVLPSLSRL 276 (276)
T ss_pred cCCCcCcchHHHHHhhcceEEEEcHHHHhCCCCCCcCCcccccCC
Confidence 999999999999999999999999999999999999999999995
No 46
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=100.00 E-value=5.3e-90 Score=698.94 Aligned_cols=274 Identities=85% Similarity=1.275 Sum_probs=264.7
Q ss_pred CceeccCccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCC
Q 008638 158 PITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGV 237 (558)
Q Consensus 158 ~~~VpVG~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~ 237 (558)
+++||||+++||||+|++|+|||+++++...++|||++++|++++|.+++++|+||||+||+|+|||||||++|||++|+
T Consensus 1 ~~~vpvg~~llGRv~d~~G~piD~~~~~~~~~~~~i~~~~p~~~~R~~~~e~L~TGIr~ID~l~pig~GQr~~If~~~G~ 80 (274)
T cd01133 1 PISVPVGPETLGRIFNVLGEPIDERGPIKTKKTWPIHREAPEFVEQSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGV 80 (274)
T ss_pred CcEEecChhhcCCEECCCCCccCCCCCCCccccccccCCCCCchhhcCcCcccccCceeeeccCCcccCCEEEEecCCCC
Confidence 57899999999999999999999998887778899999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHH
Q 008638 238 GKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLT 317 (558)
Q Consensus 238 GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~t 317 (558)
|||+|++++++|+++++.++|||++||||+||++|++++|.+.+++ +||++|++|+|+||.+|++++|+|+|
T Consensus 81 GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~--------~~tvvv~~t~d~~~~~r~~~~~~a~~ 152 (274)
T cd01133 81 GKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVL--------SKTALVYGQMNEPPGARARVALTGLT 152 (274)
T ss_pred ChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCc--------ceeEEEEECCCCCHHHHHHHHHHHHH
Confidence 9999999999999877789999999999999999999999887644 59999999999999999999999999
Q ss_pred HHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCCC
Q 008638 318 VAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLT 397 (558)
Q Consensus 318 iAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~ 397 (558)
+||||||++|+||||++||+||||+|+||||+++||+|+++||||++|++|++|+||++++++||||+|++|++|+||++
T Consensus 153 ~AEyfr~~~g~~Vl~~~Dsltr~a~A~reis~~~ge~p~~~gyp~~~f~~~~~l~ERag~~~~GSiT~~~~v~~~~dD~~ 232 (274)
T cd01133 153 MAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITSTKKGSITSVQAVYVPADDLT 232 (274)
T ss_pred HHHHHHHhcCCeEEEEEeChhHHHHHHHHHHHHcCCCCCCcCcCccHHHHHHHHHHHhcCCCCcccceEEEEEecCCCCC
Confidence 99999994499999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCC
Q 008638 398 DPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSP 439 (558)
Q Consensus 398 dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~ 439 (558)
||||+++++|+||||+|||+||++||||||||+.|+||+|++
T Consensus 233 dpi~~~~~~i~dg~ivLsr~la~~g~~PAId~~~S~SR~~~~ 274 (274)
T cd01133 233 DPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRILDP 274 (274)
T ss_pred CchHHHHHHhcceEEEEcHHHHhCCCCCCcCCccchhcccCc
Confidence 999999999999999999999999999999999999999864
No 47
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=100.00 E-value=3.1e-87 Score=694.72 Aligned_cols=325 Identities=34% Similarity=0.568 Sum_probs=304.9
Q ss_pred CceeccCccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCC
Q 008638 158 PITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGV 237 (558)
Q Consensus 158 ~~~VpVG~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~ 237 (558)
+++||||+++||||+|++|+|||+.+++...++||++.++|++++|.++++++.||||+||.++|+++|||++|||++|+
T Consensus 1 ~~~v~vg~~~lGrv~d~~G~pid~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~tGi~aiD~l~~i~~Gqri~I~G~sG~ 80 (326)
T cd01136 1 PLSVPVGDALLGRVLDAFGEPLDGKGPLGKEVRYPLLRTPPNPLKRRPIDEVLPTGVRAIDGLLTVGKGQRLGIFAGSGV 80 (326)
T ss_pred CceeeCCcccccCEECCCCcccCCCCCCCCCccccccCCCcCHHHhccceeEcCCCcEEEeeeeEEcCCcEEEEECCCCC
Confidence 57899999999999999999999998877778899999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHH
Q 008638 238 GKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLT 317 (558)
Q Consensus 238 GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~t 317 (558)
|||+|+..++ ++. +.+++||++||||++|+++++.++...+. +.||++|++|+|+||++|++++++|+|
T Consensus 81 GKTtLl~~Ia-~~~--~~~~~vi~~iGer~~ev~~~~~~~~~~~~--------l~rtvvv~~t~d~~~~~r~~~~~~a~~ 149 (326)
T cd01136 81 GKSTLLGMIA-RGT--TADVNVIALIGERGREVREFIEKDLGEEG--------LKRSVVVVATSDESPLLRVKAAYTATA 149 (326)
T ss_pred ChHHHHHHHh-CCC--CCCEEEEEEEecCCccHHHHHHHHHhcCc--------cceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 9999986554 433 35789999999999999999988876543 459999999999999999999999999
Q ss_pred HHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCCC
Q 008638 318 VAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLT 397 (558)
Q Consensus 318 iAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~ 397 (558)
+|||||| +|+||||++||+||||+|+||||+++||+|+++||||++|+.|++|+|||++.++||||+|++|++|+||++
T Consensus 150 ~AEyfr~-~g~~Vll~~Dsltr~a~A~rei~~~~ge~p~~~gyp~~~~~~~~~l~ERag~~~~GSIT~i~tv~~~gdd~~ 228 (326)
T cd01136 150 IAEYFRD-QGKDVLLLMDSLTRFAMAQREIGLAAGEPPTTKGYPPSVFALLPRLLERAGNSDKGSITAFYTVLVEGDDLN 228 (326)
T ss_pred HHHHHHH-cCCCeEEEeccchHHHHHHHHHHHhcCCCCCcCCcChHHHHHhHHHHHHhcCCCCCCeeeeeeeeecCCCCC
Confidence 9999999 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCC-
Q 008638 398 DPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELS- 476 (558)
Q Consensus 398 dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~- 476 (558)
||||+++++|+||||+|||+||++||||||||+.|+||++ +.+++++|++++.++|++|++|+|+++++++++|+...
T Consensus 229 dpi~~~~~~~~dg~ivL~r~la~~g~~PAid~~~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~~~~i~~g~y~~g~d 307 (326)
T cd01136 229 EPIADAVRSILDGHIVLSRALAAAGHYPAIDVLKSISRLM-NAVVTPEHKEAARKLRELLSAYQEVEDLIRIGAYKKGSD 307 (326)
T ss_pred cchHHhhhhccceEEEEcCcHHHcCCCCCcccccccccCc-cccCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCC
Confidence 9999999999999999999999999999999999999997 67889999999999999999999999999998776543
Q ss_pred hhHHHHHHHHHHHHHhhCC
Q 008638 477 EDDKLTVARARKIQRFLSQ 495 (558)
Q Consensus 477 ~~~~~~v~~~~~i~~fL~Q 495 (558)
++.+.+++++++|++||+|
T Consensus 308 ~~~d~~i~~~~~i~~~l~Q 326 (326)
T cd01136 308 PEVDEAIKLLPKIEAFLKQ 326 (326)
T ss_pred HHHHHHHHhHHHHHHHhCC
Confidence 3455689999999999998
No 48
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=100.00 E-value=1.7e-87 Score=679.68 Aligned_cols=269 Identities=27% Similarity=0.431 Sum_probs=255.9
Q ss_pred ceeccCccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCC
Q 008638 159 ITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVG 238 (558)
Q Consensus 159 ~~VpVG~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~G 238 (558)
++||||+++||||+|++|+|||+++++...++|||+.++|++++|.+++++|+||||+||+|+|||||||++|||++|+|
T Consensus 2 ~~vpvg~~lLGRvld~~G~piD~~~~~~~~~~~~i~~~~p~~~~R~~i~e~L~TGI~~ID~l~pigrGQr~~Ifg~~g~G 81 (274)
T cd01132 2 ADVPVGEALLGRVVDALGNPIDGKGPIETKERRPIESKAPGIIPRKSVNEPLQTGIKAIDAMIPIGRGQRELIIGDRQTG 81 (274)
T ss_pred eEEECCHhhCCCEEccCCCCccCCCCcCcCceeeccCCCCChhhcCCcccccccCCEEeeccCCcccCCEEEeeCCCCCC
Confidence 68999999999999999999999988877788999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHH
Q 008638 239 KTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV 318 (558)
Q Consensus 239 KT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~ti 318 (558)
||+|++++|.|+++ ++.+|||++||||+||++|+++++.+.+++ +||++|++|+|+||.+|++++|+|||+
T Consensus 82 Kt~L~l~~i~~~~~-~~v~~V~~~iGer~~ev~e~~~~~~~~~~~--------~~tvvv~~t~d~~~~~r~~a~~~a~ai 152 (274)
T cd01132 82 KTAIAIDTIINQKG-KKVYCIYVAIGQKASTVAQVVKTLEEHGAM--------EYTIVVAATASDPAPLQYLAPYTGCAM 152 (274)
T ss_pred ccHHHHHHHHHhcC-CCeEEEEEecccchHHHHHHHHHHHhcCcc--------ceeEEEEeCCCCchhHHHHHHHHHHHH
Confidence 99997778777643 345679999999999999999999987644 599999999999999999999999999
Q ss_pred HHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCC----CCCceeeEEEEeecCC
Q 008638 319 AEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT----KKGSITSVQAIYVPAD 394 (558)
Q Consensus 319 AEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~----~~GSIT~i~~V~v~~d 394 (558)
|||||| +|+||||++||+||||+|+||||+++||+|+++||||++|+.|++|+||+++. ++||||+|++|++|+|
T Consensus 153 AE~fr~-~G~~Vlvl~DslTr~A~A~rEisl~~ge~P~~~gYp~~~f~~~~~L~ERag~~~~~~~~GSIT~i~~V~~~~d 231 (274)
T cd01132 153 GEYFMD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDELGGGSLTALPIIETQAG 231 (274)
T ss_pred HHHHHH-CCCCEEEEEcChHHHHHHHHHHHHhcCCCCCCcCcCchHHHHhHHHHHHhhhccCCCCCcceEEEEEEEcCCC
Confidence 999999 79999999999999999999999999999999999999999999999999975 5899999999999999
Q ss_pred CCCCchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCcccc
Q 008638 395 DLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRML 437 (558)
Q Consensus 395 D~~dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~ 437 (558)
|++||||+++++|+||||+|||+||++||||||||+.|+||++
T Consensus 232 D~~~pi~~~~~~i~dg~ivLsr~la~~g~yPaId~l~S~SR~g 274 (274)
T cd01132 232 DVSAYIPTNVISITDGQIFLETDLFNKGIRPAINVGLSVSRVG 274 (274)
T ss_pred CcCcchHHHHHhhcCeEEEEcHHHHhCCCCCCcCCcccccCCC
Confidence 9999999999999999999999999999999999999999973
No 49
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=1.8e-85 Score=757.92 Aligned_cols=262 Identities=27% Similarity=0.387 Sum_probs=239.6
Q ss_pred CCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeec
Q 008638 255 GGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFI 334 (558)
Q Consensus 255 ~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~ 334 (558)
.|+|||++||||+||++|++++|.+.....++. ..++||++|++|+|+||++|++++|+|+|||||||| +|+||||++
T Consensus 682 adi~V~~~iGERg~Ev~e~l~~~~~l~~~~~g~-~~m~rtvlv~~ts~~p~~~R~~s~y~a~tiAEyfrd-~G~~Vll~~ 759 (1017)
T PRK14698 682 AQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGK-PLMERTVLIANTSNMPVAAREASIYTGITIAEYFRD-MGYDVALMA 759 (1017)
T ss_pred CCEEEEEeeccchHHHHHHHHHHHhhcccccCc-cccccEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEe
Confidence 489999999999999999999999876655554 367899999999999999999999999999999999 799999999
Q ss_pred ccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCC-------CCCceeeEEEEeecCCCCCCchhhhHhhh
Q 008638 335 DNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT-------KKGSITSVQAIYVPADDLTDPAPATTFAH 407 (558)
Q Consensus 335 DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~-------~~GSIT~i~~V~v~~dD~~dpip~~~~~i 407 (558)
||+||||+|+||||+++||||+++||||+||++|++||||||+. ++||||+|++|++|+||++||||++|++|
T Consensus 760 Ds~sR~A~A~REis~~l~e~P~~~gyP~~l~s~L~~~~ERaG~~~~l~~~~~~GSIT~i~~V~~~g~D~s~Pv~~~~~~i 839 (1017)
T PRK14698 760 DSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRV 839 (1017)
T ss_pred ccchHHHHHHHHHHHhcCCCCCCCCcCccHHHHHHHHHHhccCCcccCCCCCCcceEEEEEEECCCCCCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999973 67999999999999999999999999999
Q ss_pred cCcEEEeehhhhhcCCcCcccCCCCCccccCCC------ccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCChhHHH
Q 008638 408 LDATTVLSRQISELGIYPAVDPLDSTSRMLSPH------ILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKL 481 (558)
Q Consensus 408 lDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~------~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~~~~ 481 (558)
+||||+|||+||++||||||||+.|+||+++.. .++++|+.++++++++|++|+|+++|++++|.+.++++|+.
T Consensus 840 ~dg~i~L~~~La~~g~~PAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~el~~~i~l~g~~~l~~~d~~ 919 (1017)
T PRK14698 840 VKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNVDPEWKAMRDKAMELLQKEAELQEIVRIVGPDALPERERA 919 (1017)
T ss_pred hCcEEecCHHHHhCCCCCCcCcccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 999999999999999999999999999998532 26899999999999999999999999999998899999999
Q ss_pred HHHHHHHHH-HhhCCCCCccchhcCCCCceecHHHHHHHHHHHH
Q 008638 482 TVARARKIQ-RFLSQPFHVAEVFTGAPGKYVELKESIASFQGVL 524 (558)
Q Consensus 482 ~v~~~~~i~-~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il 524 (558)
+++++++|+ .||+|+.+..- ..++++++++..++.|+
T Consensus 920 ~~~~~~~i~e~fL~Q~~~~~~------d~~~~~~~~~~~l~~i~ 957 (1017)
T PRK14698 920 ILLVARMLREDYLQQDAFDEV------DTYCPPEKQVTMMRVLL 957 (1017)
T ss_pred HHHHhHHHHhccCCCCCCCcc------ccCCCHHHHHHHHHHHH
Confidence 999999997 59999986631 22456777766666554
No 50
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=100.00 E-value=5.7e-79 Score=632.56 Aligned_cols=247 Identities=28% Similarity=0.441 Sum_probs=231.1
Q ss_pred CCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEe
Q 008638 184 DLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV 263 (558)
Q Consensus 184 ~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~i 263 (558)
++...+.|||++++|.+ +|.++++||+||||+||+|+||+||||++|||++|+|||+|+++|+++ + +.+++||++|
T Consensus 116 ~~~~~~~~Pv~~~~P~~-~r~~~~~pL~TGirvID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~-~--~~dvvVyv~i 191 (369)
T cd01134 116 EITMVQKWPVRQPRPVK-EKLPPNEPLLTGQRVLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKY-S--NSDIVIYVGC 191 (369)
T ss_pred ccccceeeecccCCCcc-ccCCCCCchhccchhhhccccccCCCEEEEECCCCCChHHHHHHHHhC-C--CCCEEEEEEe
Confidence 34445779999999987 999999999999999999999999999999999999999999877764 3 4589999999
Q ss_pred cCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHH
Q 008638 264 GERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343 (558)
Q Consensus 264 GER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A 343 (558)
|||+||++|++++|.+.....++. ..++||++|++|+|+||.+|++++|+|+|+|||||| +|+||||++||+||||+|
T Consensus 192 GERg~Ev~e~l~ef~~l~~~~~~~-~~m~rtvlV~nts~~p~~~R~~s~yta~tiAEYfrd-~G~dVll~~Ds~tR~A~A 269 (369)
T cd01134 192 GERGNEMTEVLEEFPELTDPVTGE-PLMKRTVLIANTSNMPVAAREASIYTGITIAEYFRD-MGYNVALMADSTSRWAEA 269 (369)
T ss_pred CCChHHHHHHHHHHHhhccccccC-CccceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEEcChhHHHHH
Confidence 999999999999999877655443 357899999999999999999999999999999999 799999999999999999
Q ss_pred HHHHHhhhCCCCCCCCCCCccccchhhhHhhhcC-------CCCCceeeEEEEeecCCCCCCchhhhHhhhcCcEEEeeh
Q 008638 344 NSEVSALLGRIPSAVGYQPTLATDLGGLQERITT-------TKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSR 416 (558)
Q Consensus 344 ~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~-------~~~GSIT~i~~V~v~~dD~~dpip~~~~~ilDg~ivLsr 416 (558)
+||||+++||||+++||||+++++|++||||||+ .++||||+|++|++|+||++|||++++++|+||||+|||
T Consensus 270 ~REIs~~l~E~P~~~GYP~yl~s~La~~yERAG~~~~~~~~~~~GSIT~i~~V~~~g~D~sdPV~~~t~~i~dg~i~Lsr 349 (369)
T cd01134 270 LREISGRLEEMPGEEGYPAYLGARLASFYERAGRVKCLGSPGREGSVTIVGAVSPPGGDFSEPVTQATLRIVQVFWGLDK 349 (369)
T ss_pred HHHHHHhcCCCCCccCcCccHHHHHHHHHHhcccccccCCCCCCccEEEEEEEEccCCCcCcchHHhhHhhcceEEEECH
Confidence 9999999999999999999999999999999996 357999999999999999999999999999999999999
Q ss_pred hhhhcCCcCcccCCCCCccc
Q 008638 417 QISELGIYPAVDPLDSTSRM 436 (558)
Q Consensus 417 ~LA~~g~yPAID~l~S~SR~ 436 (558)
+||++||||||||+.|+||+
T Consensus 350 ~La~~g~yPAId~l~S~Sry 369 (369)
T cd01134 350 KLAQRRHFPSINWLISYSKY 369 (369)
T ss_pred HHHhCCCCCCcCCcccccCC
Confidence 99999999999999999996
No 51
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=100.00 E-value=1.3e-76 Score=628.77 Aligned_cols=421 Identities=28% Similarity=0.415 Sum_probs=365.2
Q ss_pred eeeEEEEECCeEEEEeCCCCchhhhceEEec-cCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceeccCc
Q 008638 87 IGQVCQVIGAVVDVRFDEGLPPILTALEVVD-HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGR 165 (558)
Q Consensus 87 ~G~V~~V~G~VVdv~F~~gLp~i~~~Lev~~-~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpVG~ 165 (558)
.|+|.+|.||+|.++ |+..+ +..+++. ++.+++.||+.+-|+ .+.+++|++|.||++|++|.+||+|++|.+|+
T Consensus 2 ~G~i~~isGp~V~a~---gm~~~-~my~~v~Vg~~~L~gEiI~i~gd-~a~iQVyE~T~Gi~~Ge~V~~Tg~pLsvELGP 76 (588)
T COG1155 2 MGKIIRISGPVVVAE---GMEGA-KMYDVVKVGEMGLIGEIIRIEGN-RATIQVYEDTAGIRPGEKVENTGRPLSVELGP 76 (588)
T ss_pred CceEEEEECCEEEEe---cCcCC-ceEEEEEEcCCceeEEEEEEeCC-eEEEEEEeecCCCCCCCeeecCCCceEEEeCc
Confidence 599999999999986 76544 2333332 345899999998555 55599999999999999999999999999999
Q ss_pred cccceEEEEeccccccc----------C----CCcc--------------------------------------------
Q 008638 166 VTLGRIMNVIGEPIDEK----------G----DLKT-------------------------------------------- 187 (558)
Q Consensus 166 ~lLGRV~d~lG~PiD~~----------~----~i~~-------------------------------------------- 187 (558)
+||+.|+|++.+|+|.. | ++..
T Consensus 77 Gll~~IyDGiQrPL~~i~e~sg~Fi~RGv~~p~Ldr~~kW~F~P~~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~ 156 (588)
T COG1155 77 GLLKSIYDGIQRPLDVIKETSGDFIARGLNPPALDRKKKWDFVPAVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGK 156 (588)
T ss_pred cHHhhhhhhccChHHHHHHHhhhHhhcCCCCCCCCcccccccccccccCCEeccCceEEEeccCCceEEEEeCCCCCceE
Confidence 99999999999999642 0 0000
Q ss_pred ------------------------------cccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCC
Q 008638 188 ------------------------------EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGV 237 (558)
Q Consensus 188 ------------------------------~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~ 237 (558)
-++||+.++.| +.++.++.+||.||+|+||.|+|+.||+..+|.||+|+
T Consensus 157 v~~i~~~G~ytv~d~ia~v~~~~g~~~~~m~~~WPVR~~rp-~~eKl~p~~Pl~TGqRviDt~FPvaKGGTaaiPGpFGs 235 (588)
T COG1155 157 VTWIAEEGEYTVEDVIATVSTEGGEVDVQMMTTWPVRKARP-VKRKLPPEIPLVTGQRVIDTLFPVAKGGTAAVPGPFGS 235 (588)
T ss_pred EEEEecCCCceeeEEEEEEecCCCeEEEEEEEeccccCCcc-ccccCCCCCcccccceeehhhcccccCccccccCCCCC
Confidence 06799999988 59999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHH
Q 008638 238 GKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLT 317 (558)
Q Consensus 238 GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~t 317 (558)
|||++.+++..+ + +.++.||++||||++|++|++.+|.|......|.. .+.||++|++|+|+|..+|+.+.|+|+|
T Consensus 236 GKTV~qh~laK~-s--dadiVVyigCGERGNEmtevL~eFPeL~Dp~tg~~-lm~RT~liaNTSnMPVAAREasIYtGiT 311 (588)
T COG1155 236 GKTVSQHTLSKL-A--DGDIVIYVGCGERGNEMTEVLQEFPELKDPNTGQP-LMDRTVLIANTSNMPVAAREASIYTGIT 311 (588)
T ss_pred CcEehhhhhhhh-c--cCCEEEEEecCCccchHHHHHHhCccccCCCCCCc-ccceeeEeecCccchHHHhhhhhhhhhh
Confidence 999999888764 2 35899999999999999999999998766554433 4678999999999999999999999999
Q ss_pred HHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcC-------CCCCceeeEEEEe
Q 008638 318 VAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT-------TKKGSITSVQAIY 390 (558)
Q Consensus 318 iAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~-------~~~GSIT~i~~V~ 390 (558)
+|||||| +|+||+++.||.+|||+|.||||..|+|+|+.+|||.+|.+.++++|||+|. .+.||+|++++|+
T Consensus 312 iaEY~RD-mGy~v~lmADSTSRWAEAlREisgRleEmPgeegyPaYL~srlA~fYERaG~v~~~~~~~r~GsvtV~gaVS 390 (588)
T COG1155 312 IAEYYRD-MGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGSRLAEFYERAGRVRLVSPEERFGSITVIGAVS 390 (588)
T ss_pred HHHHHHh-hhhhhHHhhchHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHhcCeeeecCCCcceEEEEEecCCC
Confidence 9999999 7999999999999999999999999999999999999999999999999985 3459999999999
Q ss_pred ecCCCCCCchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccC---CCc---cChHHHHHHHHHHHHHHccHHHH
Q 008638 391 VPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLS---PHI---LGEEHYNTARGVQKVLQNYKNLQ 464 (558)
Q Consensus 391 v~~dD~~dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~---~~~---~~~~h~~~a~~~r~~La~y~el~ 464 (558)
+|++|+++|++.+|+.+...+|.||++||+++|||||||+.|+|.+.+ +++ +++++..+...++++|++..|||
T Consensus 391 PpGGdfSEPVtq~Tlriv~vFw~Ld~~la~~rhfPaInwl~syS~Y~~~~~~~~~~~v~~~~~~~r~~a~~~Lq~e~elq 470 (588)
T COG1155 391 PPGGDFSEPVTQNTLRVVRVFWALDAALANRRHFPSINWLNSYSLYTEDLRSWYDENVSPEWGALRDQAMEILQRESELQ 470 (588)
T ss_pred CCCCCcCcccchheeeeeeeecccchhhhhcccCcccChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999953 222 34566677889999999999999
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHHHH-hhCCCCCccchhc-CCCCceecHHHHHHH
Q 008638 465 DIIAILGMDELSEDDKLTVARARKIQR-FLSQPFHVAEVFT-GAPGKYVELKESIAS 519 (558)
Q Consensus 465 ~ii~i~G~~~l~~~~~~~v~~~~~i~~-fL~Q~~~~ae~ft-~~~g~~v~l~dti~~ 519 (558)
+++++.|.|.|++.+++++..++.|++ ||+|+-+ ++.++ |.+-+...+.+.+..
T Consensus 471 eiv~lVG~eal~e~~~~il~va~~ire~fLqQnaf-d~vD~~~~~~kq~~mm~~i~~ 526 (588)
T COG1155 471 EIVQLVGYDALPEKEKSILDVARIIREDFLQQNAF-DEIDAYCSLRKQYLMLKAIME 526 (588)
T ss_pred HHHHHhCccccchHHHHHHHHHHHHHHHHHhhccc-CcccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999986 7777644 34444 455555555544443
No 52
>KOG1352 consensus Vacuolar H+-ATPase V1 sector, subunit A [Energy production and conversion]
Probab=100.00 E-value=3.3e-76 Score=606.64 Aligned_cols=409 Identities=28% Similarity=0.432 Sum_probs=358.7
Q ss_pred ccCCceeeEEEEECCeEEEEeCCCCchhhhceEEeccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCcee
Q 008638 82 TGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITV 161 (558)
Q Consensus 82 ~~~~~~G~V~~V~G~VVdv~F~~gLp~i~~~Lev~~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~V 161 (558)
..+..+|+|.+|.||||..+-+.|. .+.+|.-+++. .++.||+.+-|+ ...++++++|.|+.+||+|.+||+|++|
T Consensus 16 ~~es~~G~v~~VSGPVV~a~~M~G~--aMYELVrVGh~-~LvGEiIrlegD-~aTIQVYEeTsG~tVgDpvlrTgkPLsv 91 (618)
T KOG1352|consen 16 EEESEYGRVYSVSGPVVVAENMAGC--AMYELVRVGHD-ELVGEIIRLEGD-MATIQVYEETSGLTVGDPVLRTGKPLSV 91 (618)
T ss_pred hhhhccceEEeccCceEehhcccch--HHHHHHHcchH-hhhhheeEecCc-eeEEEEEeccCCcccCCchhhcCCcceE
Confidence 5567799999999999998744443 34455545553 799999988555 4558999999999999999999999999
Q ss_pred ccCccccceEEEEecccccccCCCcc------------------------------------------------------
Q 008638 162 PVGRVTLGRIMNVIGEPIDEKGDLKT------------------------------------------------------ 187 (558)
Q Consensus 162 pVG~~lLGRV~d~lG~PiD~~~~i~~------------------------------------------------------ 187 (558)
.+|++++|.|+|++.+|+.....+..
T Consensus 92 ELGPGimgsIfDGIQRPLk~I~~~s~siyiPkGv~~~aL~r~~~weF~p~k~~vg~hitGGDiyg~V~ENsli~hki~lp 171 (618)
T KOG1352|consen 92 ELGPGIMGSIFDGIQRPLKDISELSQSIYIPKGVNTPALDREIKWEFTPGKLRVGDHITGGDIYGSVFENSLIKHKILLP 171 (618)
T ss_pred eeCcchhhhhhhhhhhhHHHHHHhcCcEeccCCCCccccCccceeecccceeeecceeecCceEEEeeccchhhceeecC
Confidence 99999999999999999843210000
Q ss_pred ------------------------------------cccccccCCCCcccccccccceeeeeeeEeecccccccCceeee
Q 008638 188 ------------------------------------EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGL 231 (558)
Q Consensus 188 ------------------------------------~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gI 231 (558)
-+.||++.+.| ..++.+-+.||.||.|++|.|+||..|+...|
T Consensus 172 Pr~~Gtvt~iAp~G~Y~~~d~vlE~Ef~g~k~~~tmlq~WPVR~pRP-v~ekl~an~PLltGQRvLDalfPcVqGGTtaI 250 (618)
T KOG1352|consen 172 PRARGTVTYIAPAGNYTLDDVVLELEFDGEKTKFTMLQTWPVRQPRP-VTEKLPANHPLLTGQRVLDALFPCVQGGTTAI 250 (618)
T ss_pred CccCceEEEEecCCccccccEEEEEeecCceeeEEEEEecccCCCcc-hhhccCCCCcccccchHHHhhcchhcCCcccc
Confidence 06799998888 68999999999999999999999999999999
Q ss_pred ecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCc-ccCCCeEEEEEecCCCCHHHHHH
Q 008638 232 FGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGD-KQADSKCALVYGQMNEPPGARAR 310 (558)
Q Consensus 232 fGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~-~~~~~~t~vV~~t~~ep~~~r~~ 310 (558)
.|.+|||||++.|.+... .|.|+.||++||||++|+.|++++|.+...--.|. +.-++||++|++|+|+|..+|..
T Consensus 251 PGAFGCGKTVISQsLSKY---SNSD~iiYVGCGERGNEMsEVL~dFPeLt~ev~G~~esiMKRT~LVANTSNMPVAAREA 327 (618)
T KOG1352|consen 251 PGAFGCGKTVISQSLSKY---SNSDAIIYVGCGERGNEMSEVLMDFPELTMEVDGKTESIMKRTALVANTSNMPVAAREA 327 (618)
T ss_pred CcccccchHHHHHHHhhc---cCCCeEEEEcccccchhHHHHHHhChhhEEecCCcchhhhhhhhhhhcCCCCchhhhhh
Confidence 999999999999877532 35799999999999999999999999875322222 22478999999999999999999
Q ss_pred HHHHHHHHHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcC-------CCCCce
Q 008638 311 VGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT-------TKKGSI 383 (558)
Q Consensus 311 ~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~-------~~~GSI 383 (558)
+.|||+|++||||| +|+||-.+.||.+|||+|.||||..|+|||+..|||.+|..+|++||||||+ .+.||+
T Consensus 328 SIYTGITlsEYfRD-mG~nVsMmADStSRWAEALREISGRLaEMPADsGyPAYLgArLAsFYERAG~vkcLGsP~ReGsV 406 (618)
T KOG1352|consen 328 SIYTGITLSEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPDREGSV 406 (618)
T ss_pred hhhhcccHHHHHHh-cCcceeeeecchhHHHHHHHHhhhhhhcCcCcCCCcHHHHHHHHHHHHhcCceeecCCCCcCcee
Confidence 99999999999999 7999999999999999999999999999999999999999999999999986 578999
Q ss_pred eeEEEEeecCCCCCCchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCC---Cc--cChHHHHHHHHHHHHHH
Q 008638 384 TSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSP---HI--LGEEHYNTARGVQKVLQ 458 (558)
Q Consensus 384 T~i~~V~v~~dD~~dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~---~~--~~~~h~~~a~~~r~~La 458 (558)
|++++|++|++|++||++.+|++|+..+|.||++||++.|||.|||+.|+|+++.. .+ ..++...+..++|++||
T Consensus 407 sIVgAVSPpGGDFsDPVTsATLgIvQVFWGLDKKLAQRKHFPSiNwliSYSkY~~aL~~~Ye~~~peF~~lRtk~keilq 486 (618)
T KOG1352|consen 407 SIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDPFYEKNYPEFVVLRTKAKEILQ 486 (618)
T ss_pred EEEEeecCCCCCcCCcchhhhhheeeehhcccHHHHhhccCCccchhhhHHHHHHHHHHHHHhcCCCccchHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999632 21 01233446789999999
Q ss_pred ccHHHHHHHHHhcCCCCChhHHHHHHHHHHHHH-hhCCCCCc
Q 008638 459 NYKNLQDIIAILGMDELSEDDKLTVARARKIQR-FLSQPFHV 499 (558)
Q Consensus 459 ~y~el~~ii~i~G~~~l~~~~~~~v~~~~~i~~-fL~Q~~~~ 499 (558)
+.++|.+|++++|...|++.||.+++.+..|++ ||+|+-+.
T Consensus 487 ~eedl~eivQLVGK~aL~etdKitLevaklik~DfLqQN~ys 528 (618)
T KOG1352|consen 487 EEEDLSEIVQLVGKSALAETDKITLEVAKLIKDDFLQQNGYS 528 (618)
T ss_pred hhhhHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999985 99998665
No 53
>PRK12608 transcription termination factor Rho; Provisional
Probab=100.00 E-value=1.9e-70 Score=574.91 Aligned_cols=333 Identities=20% Similarity=0.226 Sum_probs=296.9
Q ss_pred hceEEeccCceeEEee--eeecCCceEEEE-EeccccCcccCceEEecCCCceeccCccccceEEEEecccccccCCCcc
Q 008638 111 TALEVVDHSVRLVLEV--AQHMGEGVVRTI-AMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKT 187 (558)
Q Consensus 111 ~~Lev~~~~~~lv~EV--~~~lg~~~Vr~i-~l~~t~GL~~G~~V~~tg~~~~VpVG~~lLGRV~d~lG~PiD~~~~i~~ 187 (558)
+.|++.+.+..+++.. -+..+++.+.+- ..-...||+.|+.|..++++ ++|+.+||||+|++|+|+|+..
T Consensus 21 g~l~~~~~g~gflr~~~~~~~~~~~d~yv~~~~i~~~~l~~Gd~V~~~~r~---~~~~~~LgrV~~~~G~p~d~~~---- 93 (380)
T PRK12608 21 GVLEILGDGFGFLRSARRNYLPSPDDVFVPPALIRRFNLRTGDVVEGVARP---RERYRVLVRVDSVNGTDPEKLA---- 93 (380)
T ss_pred EEEEEcCCCceEeecCccCCCCCCCCeeeCHHHHHHhCCCCCCEEEeccCC---CCChhheEEEeccCCcCchhcc----
Confidence 4455555445555553 445566666433 24456899999999999998 9999999999999999999762
Q ss_pred cccccccCCCCccccccccccee-eeeeeEeecccccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCE-EEEEEecC
Q 008638 188 EHYLPIHREAPAFVEQATEQQIL-VTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGF-SVFAGVGE 265 (558)
Q Consensus 188 ~~~~pI~~~~p~~~~R~~~~e~l-~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v-~V~~~iGE 265 (558)
...++.+..++++.+|.++.+++ .+|+|+||+|+|||||||++|+|++|+|||+|+++++++..++|+++ |++++|||
T Consensus 94 ~~~~~~~~~pi~p~~R~~ie~~~~~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgE 173 (380)
T PRK12608 94 RRPHFDDLTPLHPRERLRLETGSDDLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDE 173 (380)
T ss_pred cccCcCcCCCCCccccccccccCcchhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecC
Confidence 23456777888899999998888 99999999999999999999999999999999999999887777776 58999999
Q ss_pred CchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHHHH
Q 008638 266 RTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANS 345 (558)
Q Consensus 266 R~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A~r 345 (558)
|++|+.||++.+. .+++++++|+|+..|.+++++++++||||++ +|+||||++||+||||+|||
T Consensus 174 R~~EV~df~~~i~---------------~~Vvast~de~~~~~~~v~~~~~~~Ae~f~~-~GkdVVLvlDsltr~A~A~r 237 (380)
T PRK12608 174 RPEEVTDMRRSVK---------------GEVYASTFDRPPDEHIRVAELVLERAKRLVE-QGKDVVILLDSLTRLARAYN 237 (380)
T ss_pred CCCCHHHHHHHHh---------------hhEEeecCCCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEEeCcHHHHHHHH
Confidence 9999999988762 2588999999999999999999999999999 89999999999999999999
Q ss_pred HHHhhhCCCCCCCCCCCccccchhhhHhhhcCCC-CCceeeEEEEeec-CCCCCCchhhhHhhhcCcEEEeehhhhhcCC
Q 008638 346 EVSALLGRIPSAVGYQPTLATDLGGLQERITTTK-KGSITSVQAIYVP-ADDLTDPAPATTFAHLDATTVLSRQISELGI 423 (558)
Q Consensus 346 Eis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~-~GSIT~i~~V~v~-~dD~~dpip~~~~~ilDg~ivLsr~LA~~g~ 423 (558)
|+++.+||+|+ .||||+.|+.+.+|.|||++.. +||||+|+||+++ +||+.|||.++..+++||||||||+||++||
T Consensus 238 ei~~~~G~~~s-~G~~~s~~~~~~rl~~~A~~~~~~GSiT~i~TvLvetg~~mdd~I~ee~kg~~dg~ivLsR~lA~~~~ 316 (380)
T PRK12608 238 NEVESSGRTLS-GGVDARALQRPKRLFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMEIVLDRELADKRV 316 (380)
T ss_pred hhhcccCCCCC-CCcChHHHhhhHHHHHhcCCCCCCcchhheEEEEEecCCCCCcchHHHhcccCCCeEEECHHHHhCCC
Confidence 99999999999 8999999999999999999854 8999999999999 7888999999999999999999999999999
Q ss_pred cCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHH
Q 008638 424 YPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIA 468 (558)
Q Consensus 424 yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~ 468 (558)
|||||++.|.||.+ +.+++++|++.++.+|++|+.|++.+.+-.
T Consensus 317 fPAIDi~~S~sR~~-~~l~~~~~~~~~~~~R~~l~~~~~~e~~~~ 360 (380)
T PRK12608 317 FPAIDIAKSGTRRE-ELLLDSKELEKVRRLRRALASRKPVEAMEA 360 (380)
T ss_pred CCccCcccccCcch-hhcCCHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 99999999999985 788999999999999999999999887533
No 54
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=100.00 E-value=1.1e-69 Score=535.24 Aligned_cols=211 Identities=48% Similarity=0.782 Sum_probs=199.5
Q ss_pred eeeeEeecccccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCC
Q 008638 212 TGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQAD 291 (558)
Q Consensus 212 TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~ 291 (558)
||||+||+|+||+||||++|||++|+|||+|++++++|+. .++.||++||||++|++|+++++.+.+.+
T Consensus 1 TGir~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~---~d~~V~~~iGer~~Ev~~~~~~~~~~~~~-------- 69 (215)
T PF00006_consen 1 TGIRAIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQD---ADVVVYALIGERGREVTEFIEELKGEGAL-------- 69 (215)
T ss_dssp -SHHHHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCT---TTEEEEEEESECHHHHHHHHHHHHHTTGG--------
T ss_pred CCCceeccccccccCCEEEEEcCcccccchhhHHHHhccc---ccceeeeeccccchhHHHHHHHHhhcccc--------
Confidence 8999999999999999999999999999999999999874 36779999999999999999999887755
Q ss_pred CeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhh
Q 008638 292 SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGL 371 (558)
Q Consensus 292 ~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L 371 (558)
+||++|++|+|+||.+|++++|+||++|||||| +|+|||+++||+||||+|+|||++++||+|+++|||+++|+.|++|
T Consensus 70 ~~t~vv~~t~~~~~~~r~~~~~~a~t~AEyfrd-~G~dVlli~Dsltr~a~A~reis~~~g~~p~~~Gyp~~~~~~l~~l 148 (215)
T PF00006_consen 70 ERTVVVAATSDEPPAARYRAPYTALTIAEYFRD-QGKDVLLIIDSLTRWAQAYREISLLLGEPPGREGYPPSLFSDLASL 148 (215)
T ss_dssp GGEEEEEEETTS-HHHHHHHHHHHHHHHHHHHH-TTSEEEEEEETHHHHHHHHHHHHHHTTSSBBGGGSBTTHHHHHHHH
T ss_pred cccccccccchhhHHHHhhhhccchhhhHHHhh-cCCceeehhhhhHHHHHHHHhhhcccccccccccccchhccchhhH
Confidence 499999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HhhhcCC----CCCceeeEEEEeecCCCCCCchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCc
Q 008638 372 QERITTT----KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTS 434 (558)
Q Consensus 372 ~ERa~~~----~~GSIT~i~~V~v~~dD~~dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~S 434 (558)
+|||++. ++||||+|++|++|+||++||+++++++|+||||+|||+||++||||||||+.|+|
T Consensus 149 ~ERag~~~~~~~~GSIT~~~~v~~~~~d~~~pi~~~~~~~~dg~i~L~r~la~~~~~PAId~~~S~S 215 (215)
T PF00006_consen 149 YERAGKVNSEEGGGSITAIPTVLVPGDDITDPIPDNTKSILDGHIVLSRKLAERGIFPAIDVLKSVS 215 (215)
T ss_dssp HTTSEEBSTTTTSEEEEEEEEEEESTTBTTSHHHHHHHTTSSEEEEB-HHHHHTT-SS-BETTTEEE
T ss_pred HHHhhccccccCCceeeeecccccccccccchHHHHHHhhcceEEEeCHHHHhCCCCCccCCccCCC
Confidence 9999987 89999999999999999999999999999999999999999999999999999987
No 55
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=100.00 E-value=6.6e-68 Score=549.38 Aligned_cols=438 Identities=26% Similarity=0.372 Sum_probs=384.9
Q ss_pred CceeeEEEEECCeEEEEeCCCCchhhhc-eEEeccCceeEEeeeeecCCceEEEEEeccccCcccCce-EEecCCCceec
Q 008638 85 GAIGQVCQVIGAVVDVRFDEGLPPILTA-LEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQR-VLNTGSPITVP 162 (558)
Q Consensus 85 ~~~G~V~~V~G~VVdv~F~~gLp~i~~~-Lev~~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~-V~~tg~~~~Vp 162 (558)
.+|-+|++|.||++.|+-.+|. -+++ +++...+...-.+-+.....+.+.+++|++|.||..++. |..+|+++.+|
T Consensus 5 ~~Y~~i~~i~Gplv~ve~~eg~--~y~E~v~i~~~~G~~r~gqVle~~~~~a~vQVfegT~Gl~~~~t~vrF~g~~l~i~ 82 (463)
T COG1156 5 KEYTTISEIKGPLIIVEGVEGA--SYGELVEIETPDGEVRRGQVLEVRGDKAVVQVFEGTSGLDTKGTTVRFTGETLKIP 82 (463)
T ss_pred ceeeeEEEeccceEEEecccCC--CcceEEEEECCCCCeeeeeEeeccCceEEEEEeecccCCCCCCceEEEeCceEEEe
Confidence 4578899999999999844443 3344 333333322333333344677777999999999997765 99999999999
Q ss_pred cCccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHH
Q 008638 163 VGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242 (558)
Q Consensus 163 VG~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L 242 (558)
|++.+||||+|+.|+|||+.+.+.++++..|+..+.||..|..+.++++|||.+||.|.++.||||+.||.++|-....|
T Consensus 83 vs~dllGRifnG~G~PiDggp~i~~e~~~dI~g~~~NP~aR~yP~efIqTgIsaIDg~NtLvrgQKlPIFSgSGlphN~L 162 (463)
T COG1156 83 VSEDLLGRIFNGSGKPIDGGPEIVPEDRLDINGAPINPYARIYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNEL 162 (463)
T ss_pred ecHHhhhhhhcCCCCcCCCCCcCCCCcccccCCCCCCchhhhChhhHhhcCccHHhhhhhhhcccccccccCCCCchHHH
Confidence 99999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcC---C-EEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHH
Q 008638 243 IMELINNVAKAHG---G-FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV 318 (558)
Q Consensus 243 ~~~~i~n~a~~~~---~-v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~ti 318 (558)
+.++++ |++..+ . ..||+++|-...|.+-|.++|.+.|++ +|++++.+.+|+|+.+|...|.+|+|.
T Consensus 163 aaqIar-QA~v~~~~e~favVfaamGit~eea~fF~~~fe~tGal--------~r~vlflnlA~dp~vEri~tPr~aLt~ 233 (463)
T COG1156 163 AAQIAR-QATVDGEEEEFAVVFAAMGITHEEALFFMDEFEETGAL--------DRAVLFLNLADDPAVERIITPRMALTV 233 (463)
T ss_pred HHHHHH-hcccCCCccceeEEEeecCccHHHHHHHHHHHHhhhhh--------hhhHhhhhccCCCceeEecchhHHHHH
Confidence 987664 565322 1 368999999999999999999998865 489999999999999999999999999
Q ss_pred HHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcC--CCCCceeeEEEEeecCCCC
Q 008638 319 AEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT--TKKGSITSVQAIYVPADDL 396 (558)
Q Consensus 319 AEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~--~~~GSIT~i~~V~v~~dD~ 396 (558)
||||..++++|||+++.|+|.||+|.||||.+.++.|+++|||++++++|+.+||||+. .++||||.+++..+|.||+
T Consensus 234 AEylA~e~~~hVLVilTDMTnyceALREIsaareeVPgrRGYPGymYTdLatiYErAg~i~g~~GSiTqipIlTMP~DDI 313 (463)
T COG1156 234 AEYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIRGRKGSITQIPILTMPGDDI 313 (463)
T ss_pred HHHHhccCCceEEEEEcchhHHHHHHHHHHhhhccCCCcCCCcchHHHHHHHHHHhhceeccCCCceEEEEeeecCCCCc
Confidence 99999989999999999999999999999999999999999999999999999999997 4689999999999999999
Q ss_pred CCchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCcc----ChHHHHHHHHHHHHHHccHHHHHHHHHhcC
Q 008638 397 TDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHIL----GEEHYNTARGVQKVLQNYKNLQDIIAILGM 472 (558)
Q Consensus 397 ~dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~----~~~h~~~a~~~r~~La~y~el~~ii~i~G~ 472 (558)
|+||||.|.+|+.|||+|||+|.++|+||+||++.|.||+++..+- -++|..+++++.+.+++.+++.++.+++|.
T Consensus 314 THPIPDlTGYITEGQivl~r~l~~~gIyPpi~vlpSLSRL~~~giG~g~TReDH~~~snql~a~YA~g~d~r~l~avvge 393 (463)
T COG1156 314 THPIPDLTGYITEGQIVLSRDLHRKGIYPPINVLPSLSRLMKDGIGEGKTREDHGDVSNQLYAAYAEGRDLRELVAVVGE 393 (463)
T ss_pred CCCCCcccceeccceEEEEhhcccCCcCCCccccccHHHHhhcccCCCccccccHHHHHHHHHHHhcchhHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999865542 269999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHH-HhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCccccccccCHHHHHHHH
Q 008638 473 DELSEDDKLTVARARKIQ-RFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEEVIAKA 549 (558)
Q Consensus 473 ~~l~~~~~~~v~~~~~i~-~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~f~~~g~~~~~~~k~ 549 (558)
+.|++.||+.++++..++ +|++|.+++ --+++||++.=-.+|.- +|+....=+ -+|.++|+
T Consensus 394 ~aLs~~D~~~l~F~d~FE~~fi~qg~~e----------nrsieetLdlgW~lL~~----lp~~el~ri--~~~~I~ky 455 (463)
T COG1156 394 EALSERDRKYLKFADLFEQRFIKQGRYE----------NRSIEETLDLGWELLSI----LPESELTRI--KPDLIDKY 455 (463)
T ss_pred hhcchhHHHHHHHHHHHHHHHHhccccc----------CCCHHHHHHHhHHHHHh----CCHhHhccC--CHHHHHHh
Confidence 999999999999999998 599999887 67899999876666554 666555322 24555554
No 56
>PRK12678 transcription termination factor Rho; Provisional
Probab=100.00 E-value=8.3e-66 Score=557.17 Aligned_cols=332 Identities=22% Similarity=0.300 Sum_probs=288.6
Q ss_pred CCCchhhhceEEeccCceeEEeeeeecCCceEEEE-EeccccCcccCceEEecCCCceecc-Cc--------cccceEEE
Q 008638 104 EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTI-AMDGTEGLVRGQRVLNTGSPITVPV-GR--------VTLGRIMN 173 (558)
Q Consensus 104 ~gLp~i~~~Lev~~~~~~lv~EV~~~lg~~~Vr~i-~l~~t~GL~~G~~V~~tg~~~~VpV-G~--------~lLGRV~d 173 (558)
+++-++.+.|++.+ ++.++...-++.+++.|.+- .+-...||+.||.|... +..|- |+ ..|-||..
T Consensus 291 ~~~~~~~GiLdi~d-g~gFlR~~~y~~~~~Dvyvs~~qirr~~Lr~Gd~v~G~---vr~p~~~e~~~~r~k~~~l~~v~~ 366 (672)
T PRK12678 291 DVLVPVAGILDVLD-NYAFVRTSGYLPGPNDVYVSMNQVRKNGLRKGDAVTGA---VRAPREGEQGNQRQKFNPLVRLDS 366 (672)
T ss_pred CCeeEeeEEEEecC-CeeEeeCCCCCCCCCCeeeCHHHHHHcCCCCCCEEEEe---ecCCCCCccccccceeeeeeeEee
Confidence 45666777888885 67889988888898888543 35567899999999875 33344 33 36789999
Q ss_pred Eecccccc-cCCCcccccccccCCCCccccccccc-ceeeeeeeEeecccccccCceeeeecCCCCChhHHHHHHHHHHH
Q 008638 174 VIGEPIDE-KGDLKTEHYLPIHREAPAFVEQATEQ-QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 174 ~lG~PiD~-~~~i~~~~~~pI~~~~p~~~~R~~~~-e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
++|.+.+. ...+.+.+..|++ |.+|..+. +++.||||+||+|+|||||||+|||||+|+|||+|+++|++.++
T Consensus 367 vNg~~~e~~~~r~~F~~Ltp~~-----P~~R~~le~e~~~~giRvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~ 441 (672)
T PRK12678 367 VNGMSPEEAKKRPEFGKLTPLY-----PNERLRLETEPKKLTTRVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAIT 441 (672)
T ss_pred eCCCChHHhccCCCcccCCCCC-----hHHhcccccCcccccceeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHh
Confidence 99987764 4455566666554 57777776 89999999999999999999999999999999999999888888
Q ss_pred hhcCCEE-EEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcE
Q 008638 252 KAHGGFS-VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDV 330 (558)
Q Consensus 252 ~~~~~v~-V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dV 330 (558)
++|+++. ||++||||++||+||.+.. +..||++|+|+||..|++++|+||++|||||| +|+||
T Consensus 442 ~n~~~~~~ivvLIgERpeEVtdm~rsV---------------kgeVVasT~D~p~~~~~~~a~~ai~~Ae~fre-~G~dV 505 (672)
T PRK12678 442 TNNPECHLMVVLVDERPEEVTDMQRSV---------------KGEVIASTFDRPPSDHTTVAELAIERAKRLVE-LGKDV 505 (672)
T ss_pred hcCCCeEEEEEEEeCchhhHHHHHHhc---------------cceEEEECCCCCHHHHHHHHHHHHHHHHHHHH-cCCCE
Confidence 8787764 6899999999998754321 34599999999999999999999999999999 89999
Q ss_pred EeecccchhHHHHHHHHHhhhCC-----CCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeec-CCCCCCchhhhH
Q 008638 331 LLFIDNIFRFTQANSEVSALLGR-----IPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVP-ADDLTDPAPATT 404 (558)
Q Consensus 331 Ll~~DsltR~a~A~rEis~~lgr-----~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~-~dD~~dpip~~~ 404 (558)
|||+|||||||+|||||++.+|| +|+..+|||++|+.+++++|+ +||||+|+||+|+ ++++.|||.++.
T Consensus 506 lillDSlTR~ArAyrev~~~sGr~lSGG~d~~a~ypP~~F~~~AR~iE~-----gGSLTii~TvLVETGS~mDd~Ifeef 580 (672)
T PRK12678 506 VVLLDSITRLGRAYNLAAPASGRILSGGVDSTALYPPKRFFGAARNIEN-----GGSLTIIATALVETGSKMDEVIFEEF 580 (672)
T ss_pred EEEEeCchHHHHHHHHhhcCCCCccCCCCchhhccCccHHHHHHHhhcc-----CccceeeEEEEeccCCccCcchHHHH
Confidence 99999999999999999999999 688999999999999999984 9999999999999 566667999999
Q ss_pred hhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHH
Q 008638 405 FAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDI 466 (558)
Q Consensus 405 ~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~i 466 (558)
.+++|+||+|||+||++||||||||+.|+||++ +.+++++|+..++.+|++|+.|...+.+
T Consensus 581 kgtgn~elvLsR~LAerrifPAIDv~~S~SR~e-e~l~~~~e~~~~~~lRr~l~~~~~~~a~ 641 (672)
T PRK12678 581 KGTGNMELKLDRKLADKRIFPAVDVNASGTRKE-ELLLSPDELAIVHKLRRVLSGLDSQQAI 641 (672)
T ss_pred hhccCceeeECHHHHhCCCCCccCCCcCccccc-hhhCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999995 8889999999999999999999887765
No 57
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=100.00 E-value=1.7e-64 Score=531.25 Aligned_cols=335 Identities=19% Similarity=0.238 Sum_probs=284.9
Q ss_pred hceEEeccCceeEEee--eeecCCceEEEE-EeccccCcccCceEEecCCCceeccCccccceEEEEecccccc-cCCCc
Q 008638 111 TALEVVDHSVRLVLEV--AQHMGEGVVRTI-AMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDE-KGDLK 186 (558)
Q Consensus 111 ~~Lev~~~~~~lv~EV--~~~lg~~~Vr~i-~l~~t~GL~~G~~V~~tg~~~~VpVG~~lLGRV~d~lG~PiD~-~~~i~ 186 (558)
+.|++...+..+++.. -+..+++.+.+- .+-...+|+.||.|.+.-++..=.--...|-+|..++|.+.+. ...+.
T Consensus 53 g~le~~~~g~gflr~~~~~y~~~~~d~yvs~~~ir~~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~~~~~~~r~~ 132 (416)
T PRK09376 53 GVLEILPDGFGFLRSPDANYLPGPDDIYVSPSQIRRFNLRTGDTVEGKIRPPKEGERYFALLKVETVNGEDPEKARNRPL 132 (416)
T ss_pred EEEEEcCCCCeEEeCCCcCCCCCCCCeeeCHHHHHhcCCCCCCEEEEEeeCCCCCCCccceEEEeeeCCCCHHHhcCCCC
Confidence 3455544444555543 344566666433 2445689999999998655532212224678999999997764 44556
Q ss_pred ccccccccCCCCcccccccccc--eeeeeeeEeecccccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEE-EEEEe
Q 008638 187 TEHYLPIHREAPAFVEQATEQQ--ILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS-VFAGV 263 (558)
Q Consensus 187 ~~~~~pI~~~~p~~~~R~~~~e--~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~-V~~~i 263 (558)
+++..|++ |.+|....+ ++.||+|+||+|+|||||||+|||||+|||||||++++.++...+|.+++ ++++|
T Consensus 133 f~~l~p~~-----p~~R~~le~~~~~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLI 207 (416)
T PRK09376 133 FENLTPLY-----PNERLRLETGNPEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLI 207 (416)
T ss_pred cccCCCCC-----hhhcccccCCCCcccceeeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEe
Confidence 67666554 577777766 79999999999999999999999999999999999998888876666765 67999
Q ss_pred cCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHH
Q 008638 264 GERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343 (558)
Q Consensus 264 GER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A 343 (558)
|||++|++++++++. .++|++|+|+||..|++++|+++++||||++ +|+|||||+||||||++|
T Consensus 208 gER~~EVtdiqrsIl---------------g~vv~st~d~~~~~~~~~a~~~ie~Ae~~~e-~G~dVlL~iDsItR~arA 271 (416)
T PRK09376 208 DERPEEVTDMQRSVK---------------GEVVASTFDEPAERHVQVAEMVIEKAKRLVE-HGKDVVILLDSITRLARA 271 (416)
T ss_pred CCchhHHHHHHHHhc---------------CcEEEECCCCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEEEChHHHHHH
Confidence 999999999888762 3689999999999999999999999999997 899999999999999999
Q ss_pred HHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCC-CCCceeeEEEEeec-CCCCCCchhhhHhhhcCcEEEeehhhhhc
Q 008638 344 NSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT-KKGSITSVQAIYVP-ADDLTDPAPATTFAHLDATTVLSRQISEL 421 (558)
Q Consensus 344 ~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~-~~GSIT~i~~V~v~-~dD~~dpip~~~~~ilDg~ivLsr~LA~~ 421 (558)
|||+++++||+|+ .||+|+.|+.+.+|+|||++. ++||||+|+||+++ ++++.|||.++..+++|+||+|||+||++
T Consensus 272 qrev~~~sG~~~s-gG~~~~~~~~~~r~f~~Arn~e~~GSlT~i~T~LvetGs~mdd~I~ee~kg~~n~~ivLdR~lA~~ 350 (416)
T PRK09376 272 YNTVVPSSGKVLS-GGVDANALHRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLAEK 350 (416)
T ss_pred HHhhhhccCCCCC-CCCChhHhhhhHHHHHhhcCCCCCcceEEEEEEEecCCCCCCccHHHHHhhhcCceEeECHHHHhc
Confidence 9999999999999 899999999999999999985 79999999999999 77888999999999999999999999999
Q ss_pred CCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHH
Q 008638 422 GIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIA 468 (558)
Q Consensus 422 g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~ 468 (558)
||||||||+.|.||. ++.+++++|++.++.+|++|+.|++.+.+-.
T Consensus 351 r~fPAIDi~~S~sR~-~~~l~~~~~~~~~~~lR~~l~~~~~~e~~e~ 396 (416)
T PRK09376 351 RIFPAIDINRSGTRK-EELLLSPEELQKVWILRKILSPMDEVEAMEF 396 (416)
T ss_pred CCCCccCcccccccc-ccccCCHHHHHHHHHHHHHHHccCcHHHHHH
Confidence 999999999999998 5888999999999999999999998876533
No 58
>KOG1351 consensus Vacuolar H+-ATPase V1 sector, subunit B [Energy production and conversion]
Probab=100.00 E-value=3.8e-59 Score=467.40 Aligned_cols=401 Identities=29% Similarity=0.411 Sum_probs=355.7
Q ss_pred CceeeEEEEECCeEE---EEeCCCCchhhhceEEeccCc--eeEEeeeeecCCceEEEEEeccccCcc-cCceEEecCCC
Q 008638 85 GAIGQVCQVIGAVVD---VRFDEGLPPILTALEVVDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLV-RGQRVLNTGSP 158 (558)
Q Consensus 85 ~~~G~V~~V~G~VVd---v~F~~gLp~i~~~Lev~~~~~--~lv~EV~~~lg~~~Vr~i~l~~t~GL~-~G~~V~~tg~~ 158 (558)
-.|-+|..|.||+|- |+|+.-- .+. .+.+.++.. .-++||. |+..| +++|++|.|+. .-..|..||+.
T Consensus 22 l~y~tv~gvngplvild~vkfp~y~-eiv-~ltlpdgt~r~gqvlev~---g~kav-vqvfegtsgid~k~t~~eftg~~ 95 (489)
T KOG1351|consen 22 LTYRTVSGVNGPLVILDKVKFPKYA-EIV-NLTLPDGSVRSGQVLEVS---GEKAV-VQVFEGTSGIDAKKTTVEFTGEI 95 (489)
T ss_pred eeEeeecccCCceEEEecccccchh-hhe-EEecCCCCeecceEEEec---CCeeE-EEEeccccccccccceEEEeccc
Confidence 457899999999985 4443110 110 134444332 3577775 44444 88999999997 56899999999
Q ss_pred ceeccCccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCC
Q 008638 159 ITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVG 238 (558)
Q Consensus 159 ~~VpVG~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~G 238 (558)
++.||++.+||||+|+.|+|||.++++..+.+..|...+.++..|..+.|+++|||.+||.|..|.||||+.||..+|..
T Consensus 96 lr~pvsedmlgrifngsgkpid~gp~vl~edyldi~gqpinp~~riypeemiqtgis~idvmnsiargqkipifsaaglp 175 (489)
T KOG1351|consen 96 LRTPVSEDMLGRIFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLP 175 (489)
T ss_pred ccccccHHHhhhhhcCCCCccCCCCCcChHHhhccCCCcCCcccccChHHHHHhCchHHhhhhHHhccCccceeecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHH--h----h----cC-C-EEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHH
Q 008638 239 KTVLIMELINNVA--K----A----HG-G-FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPG 306 (558)
Q Consensus 239 KT~L~~~~i~n~a--~----~----~~-~-v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~ 306 (558)
...++.++.+..- | . |. . -.||+++|-..+...-|.+.|.|.|- +.+++++.+-+|+|-.
T Consensus 176 hneiaaqicrqaglvk~~~k~~~d~~~dnfaivfaamgvnmetarffk~dfeengs--------m~~v~lflnlandpti 247 (489)
T KOG1351|consen 176 HNEIAAQICRQAGLVKRPEKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGS--------MERVCLFLNLANDPTI 247 (489)
T ss_pred hhHHHHHHHHhcCccccCCcccccccccceeeeehhhcccHHHHHHHHhhHHhcCC--------ccceEEEEecCCCCch
Confidence 9999988776421 1 1 11 2 35899999988888878888988873 4589999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcC--CCCCcee
Q 008638 307 ARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT--TKKGSIT 384 (558)
Q Consensus 307 ~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~--~~~GSIT 384 (558)
+|...+..|+|.|||+..+.+||||+++.|++.||+|.||||.+..|.|+++|||++++++|+.+|||||+ .++||||
T Consensus 248 eriitprlalt~aeflayq~ekhvlviltdmssya~alrevsaareevpgrrg~pgymytdlatiyeragrvegr~gsit 327 (489)
T KOG1351|consen 248 ERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRNGSIT 327 (489)
T ss_pred hhhcchhhhHhHHHHHHHhhcCeEEEEEeccHHHHHHHHHHHHhhhhCCCcCCCCceehhhHHHHHHHhcccccCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997 5789999
Q ss_pred eEEEEeecCCCCCCchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCc----cChHHHHHHHHHHHHHHcc
Q 008638 385 SVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHI----LGEEHYNTARGVQKVLQNY 460 (558)
Q Consensus 385 ~i~~V~v~~dD~~dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~----~~~~h~~~a~~~r~~La~y 460 (558)
.+++..+|.||+++|+||-|.+|+.|||+.||+|.++.+||+||+|.|.||+|..++ .-++|-++.+++...++--
T Consensus 328 qipiltmpnddithpipdltgyitegqiyvdrqlhnr~iyppinvlpslsrlmksaigegmtr~dh~dvsnqlya~yaig 407 (489)
T KOG1351|consen 328 QIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYACYAIG 407 (489)
T ss_pred eeeeEecCCcccCCCCCcccceeecceEEEehhhhcccCCCCcccchhHHHHHHHHhcCCcccccchhhHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999985544 3479999999999999999
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHHHH-hhCCCCCc
Q 008638 461 KNLQDIIAILGMDELSEDDKLTVARARKIQR-FLSQPFHV 499 (558)
Q Consensus 461 ~el~~ii~i~G~~~l~~~~~~~v~~~~~i~~-fL~Q~~~~ 499 (558)
|+.|.+-+.+|.+.|+.+|++.+++-.++++ |++|..++
T Consensus 408 kdvqamkavvgeeals~ed~l~lefl~kfek~fi~qg~ye 447 (489)
T KOG1351|consen 408 KDVQAMKAVVGEEALSSEDLLYLEFLDKFEKNFISQGAYE 447 (489)
T ss_pred chHHHHHHHhcccccChhhhHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999985 99998776
No 59
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=100.00 E-value=4.2e-58 Score=484.78 Aligned_cols=331 Identities=18% Similarity=0.252 Sum_probs=272.1
Q ss_pred ceEEeccCceeEEee--eeecCCceEEEE-EeccccCcccCceEEecCCCceeccCc--cccceEEEEeccccc-ccCCC
Q 008638 112 ALEVVDHSVRLVLEV--AQHMGEGVVRTI-AMDGTEGLVRGQRVLNTGSPITVPVGR--VTLGRIMNVIGEPID-EKGDL 185 (558)
Q Consensus 112 ~Lev~~~~~~lv~EV--~~~lg~~~Vr~i-~l~~t~GL~~G~~V~~tg~~~~VpVG~--~lLGRV~d~lG~PiD-~~~~i 185 (558)
.|++...+..+++.. -+..+++.+.+- ..-...+|+.||.|.+.-++.. -++ .-|=++-.++|.+.+ ..+.+
T Consensus 54 ~le~~~~g~gflr~~~~~~~~~~~d~yvs~~~i~~~~lr~gd~v~g~~R~~~--~~ER~~~Ll~v~~vn~~~~e~~~~ri 131 (415)
T TIGR00767 54 VLEILPDGFGFLRSPDSSYLPGPDDIYVSPSQIRRFNLRTGDTIEGQIRSPK--EGERYFALLKVESVNGDDPEKAKNRV 131 (415)
T ss_pred EEEEcCCCCeEEeCCCcCCCCCCCCeeeCHHHHHhcCCCCCCEEEEEEeccc--cHhHHHHHhCCCccCCCCccccCCCe
Confidence 344444344555543 344566666433 2445689999999988644321 111 122244444555443 35567
Q ss_pred cccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHHHHHHHHHHHhhcCC-EEEEEEec
Q 008638 186 KTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-FSVFAGVG 264 (558)
Q Consensus 186 ~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~-v~V~~~iG 264 (558)
.+++..|+++.....++. .+-..|+|+||+++|||+|||++|+|++|+|||+|+..+.++..++|.+ ++++++||
T Consensus 132 ~Fe~LTf~YP~er~~Le~----~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIg 207 (415)
T TIGR00767 132 LFENLTPLYPNERLRLET----STEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLID 207 (415)
T ss_pred EEEEeeecCCCccceeec----CccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcC
Confidence 788888988654333332 2345688999999999999999999999999999999888877665555 45779999
Q ss_pred CCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHHH
Q 008638 265 ERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQAN 344 (558)
Q Consensus 265 ER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A~ 344 (558)
||++|+.|+++.+ .+.+|++|+|+||..|.++++.++++||||++ +|+||||++|+++|||+||
T Consensus 208 ER~~EVtDLqrsI---------------lg~Vvast~d~p~~~~~~va~~v~e~Ae~~~~-~GkdVVLlIDEitR~arAq 271 (415)
T TIGR00767 208 ERPEEVTDMQRSV---------------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVE-HKKDVVILLDSITRLARAY 271 (415)
T ss_pred CCCccHHHHHHHh---------------hceEEEecCCCChHHHHHHHHHHHHHHHHHHH-cCCCeEEEEEChhHHHHHH
Confidence 9999999988876 24689999999999999999999999999998 8999999999999999999
Q ss_pred HHHHhhhCCCCCCCCCCCccccchhhhHhhhcCC-CCCceeeEEEEeec-CCCCCCchhhhHhhhcCcEEEeehhhhhcC
Q 008638 345 SEVSALLGRIPSAVGYQPTLATDLGGLQERITTT-KKGSITSVQAIYVP-ADDLTDPAPATTFAHLDATTVLSRQISELG 422 (558)
Q Consensus 345 rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~-~~GSIT~i~~V~v~-~dD~~dpip~~~~~ilDg~ivLsr~LA~~g 422 (558)
|||++++||+|+ .||||++|+.+.+|+|||++. ++||||+|+||+++ +||+.|||.++..+++||||+|||+||++|
T Consensus 272 rei~~~~G~~~s-~G~~~~~~~~~~~~~~~a~~~~~~GSiT~~~TvLvetg~~mdd~i~~e~kg~~~~~ivL~r~la~~~ 350 (415)
T TIGR00767 272 NTVTPASGKVLS-GGVDANALHRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLADRR 350 (415)
T ss_pred HHhHhhcCCCCC-CCcChhhhcccHHHHhhcCCCCCCcchhheEEEEeccCCCCCcchHHHhccccCCeEEECHHHHhCC
Confidence 999999999999 899999999999999999984 79999999999999 677788999999999999999999999999
Q ss_pred CcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHH
Q 008638 423 IYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDI 466 (558)
Q Consensus 423 ~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~i 466 (558)
||||||++.|.||.+ +.+++++|++.++.+|++|+.|.+.+.+
T Consensus 351 ~fPAidi~~S~sR~~-~~l~~~~~~~~~~~~r~~l~~~~~~~~~ 393 (415)
T TIGR00767 351 IFPAIDIKKSGTRKE-ELLLTPEELQKIWVLRKIISPMDSIEAM 393 (415)
T ss_pred CCCCcCcccccccch-hhcCCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 999999999999995 7889999999999999999999887764
No 60
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=100.00 E-value=5e-53 Score=425.30 Aligned_cols=238 Identities=24% Similarity=0.356 Sum_probs=219.8
Q ss_pred eeEeecccccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEE-EEEEecCCchhHHHHHHHHHHhcccccCcccCCC
Q 008638 214 IKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS-VFAGVGERTREGNDLYREMIESGVIKLGDKQADS 292 (558)
Q Consensus 214 IkvID~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~-V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~ 292 (558)
.|+||+|+||++|||++|||++|+|||||+++++++....|.+++ +++++|||++|+.++++.+
T Consensus 4 ~~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I--------------- 68 (249)
T cd01128 4 TRVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV--------------- 68 (249)
T ss_pred hhheeeecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHh---------------
Confidence 499999999999999999999999999999988877654454555 5577999999999988876
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhH
Q 008638 293 KCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQ 372 (558)
Q Consensus 293 ~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ 372 (558)
++++|++++++||..|+++++.++++||||++ +|+||+||+|+++||++|+||+++..|++| ..||||++|+.+.+++
T Consensus 69 ~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~-~G~~vll~iDei~r~a~a~~ev~~~~G~~~-sgG~~~~~~~~~~q~~ 146 (249)
T cd01128 69 KGEVIASTFDEPPERHVQVAEMVLEKAKRLVE-HGKDVVILLDSITRLARAYNTVVPPSGKIL-SGGVDANALHKPKRFF 146 (249)
T ss_pred ccEEEEecCCCCHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEECHHHhhhhhhhccccCCCCC-CCCcChhhhhhhHHHH
Confidence 46899999999999999999999999999998 799999999999999999999999999999 6899999999999999
Q ss_pred hhhcCC-CCCceeeEEEEeec-CCCCCCchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHH
Q 008638 373 ERITTT-KKGSITSVQAIYVP-ADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTA 450 (558)
Q Consensus 373 ERa~~~-~~GSIT~i~~V~v~-~dD~~dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a 450 (558)
|||+.. ++||||+++|++++ ++|..||+.++..+++|+||+|||+|++.|+||||||+.|.||. ++.++++.||..+
T Consensus 147 ~~Ar~~~~~gsIt~l~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr~-~~ll~~~~~~~~~ 225 (249)
T cd01128 147 GAARNIEEGGSLTIIATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRK-EELLLDPEELQRM 225 (249)
T ss_pred HHhcCCCCCCceEEeeeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCcc-chhhCCHHHHHHH
Confidence 999985 89999999999999 56666799999999999999999999999999999999999997 6888899999999
Q ss_pred HHHHHHHHccHHHHHHHHH
Q 008638 451 RGVQKVLQNYKNLQDIIAI 469 (558)
Q Consensus 451 ~~~r~~La~y~el~~ii~i 469 (558)
+++|++|+.|++++++..+
T Consensus 226 ~~~r~~~~~~~~~~~~~~~ 244 (249)
T cd01128 226 WLLRRVLSDMDPIEAMEFL 244 (249)
T ss_pred HHHHHHHHccChHHHHHHH
Confidence 9999999999999998654
No 61
>COG1158 Rho Transcription termination factor [Transcription]
Probab=100.00 E-value=1.7e-47 Score=389.67 Aligned_cols=327 Identities=21% Similarity=0.297 Sum_probs=275.7
Q ss_pred eEEeccCceeEEeee--eecCCceEEEEE-eccccCcccCceEEecCCCceeccCccccceEEEEecccccc-cCCCccc
Q 008638 113 LEVVDHSVRLVLEVA--QHMGEGVVRTIA-MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDE-KGDLKTE 188 (558)
Q Consensus 113 Lev~~~~~~lv~EV~--~~lg~~~Vr~i~-l~~t~GL~~G~~V~~tg~~~~VpVG~~lLGRV~d~lG~PiD~-~~~i~~~ 188 (558)
|++...+..+++..- ++.+.+.+.+.+ .-...+|+.||.|.+.-++.+=-.-..-|-||.-++|.+.+. +..+.++
T Consensus 58 Leil~dGfGFLR~~~~~yl~~~~DiYvSpSQIRrf~LrtGD~v~G~vR~Pke~Ery~aLl~ve~vN~~~pe~~~~R~~F~ 137 (422)
T COG1158 58 LEILPDGFGFLRSADSSYLPGPDDIYVSPSQIRRFNLRTGDTVEGKVRPPKEGERYFALLKVEAVNGDDPEKAKNRVLFE 137 (422)
T ss_pred EEeccCCcceeecCccccCCCCCceEECHHHHhhccCccCCEEeeeecCCCcccceeeeEEEeecCCCCHHHhhccCCcc
Confidence 444444445666555 666777765443 234579999999988755544333335677999999998764 5677889
Q ss_pred ccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEE-EEEecCCc
Q 008638 189 HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSV-FAGVGERT 267 (558)
Q Consensus 189 ~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V-~~~iGER~ 267 (558)
...|+++.....+++......+.| |+||++.|||||||.+|++|+.+|||+|++++++.++++|+++.+ +++|+||+
T Consensus 138 ~LTPlyP~erl~LE~~~~~~~ls~--RviDL~~PIGkGQR~LIVAPPkaGKT~lLq~IA~aIt~N~Pe~~LiVLLIDERP 215 (422)
T COG1158 138 NLTPLYPNERLKLERENGSTDLST--RVIDLISPIGKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVLLIDERP 215 (422)
T ss_pred cCCCCCCcceeeeecCCCcccchh--HHHhhhcccCCCceeeEecCCCCCchHHHHHHHHHHhcCCCceEEEEEEecCCc
Confidence 999999999988998887777877 999999999999999999999999999999999999999999875 58899999
Q ss_pred hhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHHHHHH
Q 008638 268 REGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEV 347 (558)
Q Consensus 268 rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A~rEi 347 (558)
+||+|+.+.. +..||++|+|+||..|.+++...+.-|....+ +|+||++++|||||+|+||+-+
T Consensus 216 EEVTdmqrsV---------------~geViaSTFDepp~~HvqVAE~viEkAKRlVE-~~kDVVILLDSITRLaRAYN~v 279 (422)
T COG1158 216 EEVTDMQRSV---------------KGEVVASTFDEPPSRHVQVAEMVIEKAKRLVE-HGKDVVILLDSITRLARAYNTV 279 (422)
T ss_pred hHHHHHHHhh---------------cceEEeecCCCcchhhHHHHHHHHHHHHHHHH-cCCcEEEEehhHHHHHHHhccc
Confidence 9999977654 46799999999999999999999999999998 8999999999999999999999
Q ss_pred HhhhCCCCCC-----CCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCCCCchhhhHhhhcCc----EEEeehhh
Q 008638 348 SALLGRIPSA-----VGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDA----TTVLSRQI 418 (558)
Q Consensus 348 s~~lgr~P~~-----~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~dpip~~~~~ilDg----~ivLsr~L 418 (558)
....|+..+. .-|.|.-|.--|+-. +.|||+|+++|.++++|..+|.+ +|..|+| .++|||+|
T Consensus 280 ~P~SGkvLsGGvD~nAL~~PKrFFGAARNI-----EeGGSLTIiATALVdTGSrMDeV---IfEEFKGTGNmEl~LdR~l 351 (422)
T COG1158 280 VPSSGKVLSGGVDANALHRPKRFFGAARNI-----EEGGSLTIIATALVDTGSRMDEV---IFEEFKGTGNMELHLDRKL 351 (422)
T ss_pred CCCCCCeecCCcChhhhcCchhhhhhhhcc-----ccCcchhhhhhhhhhcCCccchh---hhhhhcCCCceEEEEhhhh
Confidence 9999998887 236666555444432 57999999999999999999998 7888887 69999999
Q ss_pred hhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHH
Q 008638 419 SELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDI 466 (558)
Q Consensus 419 A~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~i 466 (558)
|++++|||||+..|.+|. +..++++++.+..+.+|++|+...+.+.+
T Consensus 352 aerRifPAIdi~kSGTRK-EeLLl~~~~l~k~w~lRr~l~~md~~~a~ 398 (422)
T COG1158 352 AERRIFPAIDINKSGTRK-EELLLSPDELQKMWVLRRILSPMDEIDAI 398 (422)
T ss_pred hhcccccceecccCCcch-HhhcCCHHHHHHHHHHHHHhcCCChHHHH
Confidence 999999999999999999 78899999999999999999876555543
No 62
>KOG1353 consensus F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=3e-45 Score=360.87 Aligned_cols=310 Identities=23% Similarity=0.339 Sum_probs=278.9
Q ss_pred CceeeEEEEECCeEEEEeCCCCchhhhceEEeccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceeccC
Q 008638 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (558)
Q Consensus 85 ~~~G~V~~V~G~VVdv~F~~gLp~i~~~Lev~~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpVG 164 (558)
.+.|+|.+|.+.+..|. ||.++ .+-|++.+. ..+..++.++..+.|.+..|++..-++.|+.|+.|+....||+|
T Consensus 19 eEtgrVLsIGdGIArV~---GL~nv-QAeEmvEFs-sGlKgmalnle~~~vg~v~~g~d~~ikeg~~VkrTgaIvDVpvg 93 (340)
T KOG1353|consen 19 EETGRVLSIGDGIARVY---GLTNV-QAEEMVEFS-SGLKGMALNLEGENVGVVVFGEDSLIKEGDTVKRTAAISDVPPL 93 (340)
T ss_pred hhccceEEEcCceeeee---ccccc-chHHHHhhh-ccccchhccccCCceEEEEEcCcceeccCceEEeeeeeeccCch
Confidence 45799999999999997 99888 467777765 45778999999999999999999999999999999999999999
Q ss_pred ccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHHHH
Q 008638 165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM 244 (558)
Q Consensus 165 ~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~~ 244 (558)
+.+|||+.|.+|+|||++|++.....+ +..|.+..+|++||+|++|+++|||||||.+|+|++.+|||.|..
T Consensus 94 ~~LlgrvvdAlGn~idgkG~i~~~~~~--------ii~r~Sv~epmqtg~KAvdslVpigRgqrELiIgdRqTGkTsla~ 165 (340)
T KOG1353|consen 94 KALLGRVGCALGEPIDGNGKISAKERR--------IIPRASVDEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTSLAI 165 (340)
T ss_pred HHHhhhhhhhhcCeecCCCCccccccc--------cccceeeechhhhhhhHhhceeeeccCceEEEeccccCCceeeee
Confidence 999999999999999999998765543 678889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC-------CEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHH
Q 008638 245 ELINNVAKAHG-------GFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLT 317 (558)
Q Consensus 245 ~~i~n~a~~~~-------~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~t 317 (558)
+.|.|+...+. -+|||+.||++...+..+++.|.+.+.+ +++++|.+|++
T Consensus 166 dTI~nqk~~N~~~~ekkKiyCvyvaigqkrStvaqlv~~l~~~~a~--------~y~ivv~atas--------------- 222 (340)
T KOG1353|consen 166 DTILNQKRGNECLDEKKKIYCVYVAIGQKRSTVAQLVQRLEEADAM--------EYSIVVAATAS--------------- 222 (340)
T ss_pred hhhhhhhhhcccccccceEEEEEEecccchhHHHHHHHHHHhcCCc--------eEEEEEEeecc---------------
Confidence 99999864432 4799999999999999999999988755 58999999877
Q ss_pred HHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCCC
Q 008638 318 VAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLT 397 (558)
Q Consensus 318 iAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~ 397 (558)
.++|++
T Consensus 223 --------------------------------------------------------------------------q~gdvs 228 (340)
T KOG1353|consen 223 --------------------------------------------------------------------------QAGDVS 228 (340)
T ss_pred --------------------------------------------------------------------------ccccee
Confidence 889999
Q ss_pred CchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCCh
Q 008638 398 DPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSE 477 (558)
Q Consensus 398 dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~ 477 (558)
.++|+++++| ||||+|+.+|+.+|+.||||+..|+||+++...+ +...++|..++-.|+||+|+..+ +.+|.| |+.
T Consensus 229 ayiptnvisi-dgqi~l~t~lfy~girpainvg~svsrvgsaaq~-kamkqvag~~klelaq~revaaf-aqfgsd-lda 304 (340)
T KOG1353|consen 229 AYIPTNVISI-DGQIFLETELFYKGIRPAINVGLSVSRVGSAAQT-KAMKQVAGSLKLELAQYREVAAF-AQFGSD-LDA 304 (340)
T ss_pred eecccceeee-cchhHHHHHHHHhccchhheeeeEeeeccchHHH-HHHHHHhhhhhhHHHHHHHHHHH-HHhccc-ccH
Confidence 9999999999 9999999999999999999999999999866654 56778889999999999999997 567865 888
Q ss_pred hHHHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHH
Q 008638 478 DDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIA 518 (558)
Q Consensus 478 ~~~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~ 518 (558)
.++..+.|+.++.+.|+|+.+. +...+|++.
T Consensus 305 ~tq~~l~rg~rltellkq~qy~----------p~~~e~qv~ 335 (340)
T KOG1353|consen 305 ATQQLLNRGVRLTELLKQGQYA----------PLAIEEQVA 335 (340)
T ss_pred HHHHHHHhhhHHHHHHhcCCCC----------Ccchhhhee
Confidence 9999999999999999999887 666677664
No 63
>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the C-terminal domain, which forms a left-handed superhelix composed of 4-5 individual helices. The C-terminal domain can vary between the alpha and beta subunits, and between different ATPases []. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3OAA_U 2F43_B 1MAB_B 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B ....
Probab=99.41 E-value=6.3e-13 Score=118.94 Aligned_cols=96 Identities=30% Similarity=0.549 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHccHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhCCCCCccchhcCCCCceec-HHHHHHHHHHHHc
Q 008638 447 YNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVE-LKESIASFQGVLD 525 (558)
Q Consensus 447 ~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~~~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~-l~dti~~~~~il~ 525 (558)
+++++.++.+|++|+||+++++++|.+.|+++++.++.+|++|++||+|+.+... ..++.++. +.+++..+.++++
T Consensus 1 k~v~~~l~~~Laq~~EL~~~~q~vG~d~L~~~~k~~l~~g~~i~e~LkQ~~~~~~---~~~~q~~~~~~~~~~~~~~~~~ 77 (113)
T PF00306_consen 1 KKVAGQLKLILAQYRELEEFVQFVGSDALDDEDKLILERGRRIREFLKQNAFDPV---PLEKQYVMILEETIDLFYAILR 77 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTCSTHHHHHHHHHHHHHHHHT-BSTTTTT---SSHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCCCCCCCC---cCcchhhhHHHHHHHHHHHHHh
Confidence 3678999999999999999999999999999999999999999999999988854 44555678 8999999999999
Q ss_pred cccCCCCccccccccCHHHH
Q 008638 526 GKYDDLPEQSFYMVGGIEEV 545 (558)
Q Consensus 526 G~~d~~p~~~f~~~g~~~~~ 545 (558)
|+||++|+..|.+++++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ 97 (113)
T PF00306_consen 78 GKFDDIPEEELEKIETKDIE 97 (113)
T ss_dssp TTTTTS-GGGHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHhhHHHH
Confidence 99999999999999887654
No 64
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.04 E-value=6.6e-09 Score=94.56 Aligned_cols=160 Identities=33% Similarity=0.486 Sum_probs=116.8
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHH
Q 008638 229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGAR 308 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r 308 (558)
++|+|++|+|||+++..++...++ ++..++|....+...+..+.+..+...+ ...+..++....+......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 72 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEIEELTERLIGESLKG--------ALDNLIIVFATADDPAAAR 72 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCcchHHHHHHHhhhhhcc--------ccccEEEEEcCCCCCcHHH
Confidence 579999999999999998887654 4456778888877766654433332222 1234445555555443333
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEE
Q 008638 309 ARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQA 388 (558)
Q Consensus 309 ~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~ 388 (558)
.. .++.++.. ..+..++++|+++.+.+...+. ..++++.+...+..|.+++. ...+|.+.+
T Consensus 73 ~~------~~~~~~~~-~~~~~~lviDe~~~~~~~~~~~---------~~~~~~~~~~~l~~l~~~~~---~~~~~vv~~ 133 (165)
T cd01120 73 LL------SKAERLRE-RGGDDLIILDELTRLVRALREI---------REGYPGELDEELRELLERAR---KGGVTVIFT 133 (165)
T ss_pred HH------HHHHHHHh-CCCCEEEEEEcHHHHHHHHHHH---------HhcCChHHHHHHHHHHHHHh---cCCceEEEE
Confidence 22 45667776 6777899999999999876653 34677788888888888874 468999999
Q ss_pred EeecCCCCCCc----hhhhHhhhcCcEEEeeh
Q 008638 389 IYVPADDLTDP----APATTFAHLDATTVLSR 416 (558)
Q Consensus 389 V~v~~dD~~dp----ip~~~~~ilDg~ivLsr 416 (558)
...+.++..+| .+..+....|+.|+|+|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 165 (165)
T cd01120 134 LQVPSGDKGDPRLTRGAQNLEDIADTVIVLSR 165 (165)
T ss_pred EecCCccccCcccccCccceeeecceEEEEeC
Confidence 99999888888 88888999999999986
No 65
>PF02874 ATP-synt_ab_N: ATP synthase alpha/beta family, beta-barrel domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR004100 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the N-terminal domain, which forms a closed beta-barrel with Greek-key topology. ; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015992 proton transport, 0046034 ATP metabolic process, 0016469 proton-transporting two-sector ATPase complex; PDB: 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B 1E79_B 1E1R_C 2XND_C ....
Probab=98.50 E-value=2.5e-07 Score=75.23 Aligned_cols=66 Identities=44% Similarity=0.569 Sum_probs=54.2
Q ss_pred EEEEECCeEEEEeCCC-CchhhhceEEe--ccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecC
Q 008638 90 VCQVIGAVVDVRFDEG-LPPILTALEVV--DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTG 156 (558)
Q Consensus 90 V~~V~G~VVdv~F~~g-Lp~i~~~Lev~--~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg 156 (558)
|++|.|++++++|..+ +|.+++.+.+. ++. ...++.+.+++++.+++|+|++++||++|++|.+||
T Consensus 1 V~~v~G~vv~v~~~~~~~~g~~~~~~~~~~~~~-~~~~~~Vv~~~~~~v~~~~~~~t~Gl~~G~~V~~tG 69 (69)
T PF02874_consen 1 VTQVVGPVVEVEFGPGVLPGIGEAVEVELVDFG-NGVLGEVVGLDEDEVRLQVFGSTDGLSRGTEVRFTG 69 (69)
T ss_dssp EEEEECTEEEEECSEEEEEETTTEEEEEEEEET-TEEEEEEEEEETTEEEEEESSSGTTSBTTCEEEEEE
T ss_pred CccccceEEEEEcCCCCCCCccEEEEEecccce-eeeeeeecccCccEEEEEEecCCCCCCCCCEEEcCc
Confidence 7899999999987643 67777777665 323 456677777899999999999999999999999986
No 66
>PF11421 Synthase_beta: ATP synthase F1 beta subunit; InterPro: IPR020971 F-type ATPases have 2 components, CF1 - the catalytic core - and CF0 - the membrane proton channel. CF1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. CF0 has three main subunits: a, b and c. This entry represents the beta subunit of the F1 component. The NMR solution structure of the protein in SDS micelles was found to contain two helices, an N-terminal amphipathic alpha-helix and a C-terminal alpha-helix separated by a large unstructured internal domain. The N-terminal alpha-helix is the Tom20 receptor binding site whereas the C-terminal alpha-helix is located upstream of the mitochondrial processing peptidase cleavage site [].; GO: 0005524 ATP binding, 0016887 ATPase activity, 0006200 ATP catabolic process, 0006754 ATP biosynthetic process, 0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); PDB: 1PYV_A.
Probab=98.48 E-value=6.8e-08 Score=72.85 Aligned_cols=47 Identities=77% Similarity=0.920 Sum_probs=35.9
Q ss_pred ChhhhHhHHHhhhhcccCCCCCCCCCCcc--CCCcccccCCcchhhhhh
Q 008638 1 MASRRLLSSLLRSSVRRSPSKSSLSNSSV--FSPAATRRASPYGHLLSR 47 (558)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 47 (558)
||+||+|++|+|++.|++.+++.|+|++- ..+.+.++++|+|++|+|
T Consensus 1 MASRR~lSSlLRSssrr~~sks~l~~~~pr~~sp~p~~R~SP~gyLLnR 49 (49)
T PF11421_consen 1 MASRRLLSSLLRSSSRRSASKSPLSNSSPRLPSPSPASRASPYGYLLNR 49 (49)
T ss_dssp ---SHHHHHHHHHHHTTSSSST-GGGGTTTTSTTT-STT-SHHHHHHHH
T ss_pred CchHHHHHHHHHHHhcccccccccccCCCCCCCccccCCCCccchhccC
Confidence 99999999999999999999988886654 555568899999999986
No 67
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=98.19 E-value=7.2e-06 Score=80.99 Aligned_cols=182 Identities=19% Similarity=0.193 Sum_probs=100.6
Q ss_pred eeeeeeEeeccc--ccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCc
Q 008638 210 LVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGD 287 (558)
Q Consensus 210 l~TGIkvID~l~--PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~ 287 (558)
+.|||.-+|-++ -+-+|.-++|.|++|+|||+|+.+++.+.+++.+.-++|+..-|..+++ ++.|..-|. +..+
T Consensus 1 V~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l---~~~~~s~g~-d~~~ 76 (226)
T PF06745_consen 1 VPTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEEL---IENMKSFGW-DLEE 76 (226)
T ss_dssp E--SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHH---HHHHHTTTS--HHH
T ss_pred CCCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHH---HHHHHHcCC-cHHH
Confidence 369999999999 7889999999999999999999999988776535678899888876555 444544332 1100
Q ss_pred ccCCCeEEEEEecCCCCHH-HHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCcccc
Q 008638 288 KQADSKCALVYGQMNEPPG-ARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLAT 366 (558)
Q Consensus 288 ~~~~~~t~vV~~t~~ep~~-~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~ 366 (558)
.....+-. +.....+... .....-...-.+.+...+ .+. -.+++||++-+ .++.. |..+..
T Consensus 77 ~~~~g~l~-~~d~~~~~~~~~~~~~~~l~~~i~~~i~~-~~~-~~vVIDsls~l-~~~~~--------------~~~~r~ 138 (226)
T PF06745_consen 77 YEDSGKLK-IIDAFPERIGWSPNDLEELLSKIREAIEE-LKP-DRVVIDSLSAL-LLYDD--------------PEELRR 138 (226)
T ss_dssp HHHTTSEE-EEESSGGGST-TSCCHHHHHHHHHHHHHH-HTS-SEEEEETHHHH-TTSSS--------------GGGHHH
T ss_pred HhhcCCEE-EEecccccccccccCHHHHHHHHHHHHHh-cCC-CEEEEECHHHH-hhcCC--------------HHHHHH
Confidence 00011222 3322222100 011111223455566665 344 68899999966 11110 111122
Q ss_pred chhhhHhhhcCCCCCceeeEEEEeecCCCCCCchhhhHhh-hcCcEEEeehh
Q 008638 367 DLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFA-HLDATTVLSRQ 417 (558)
Q Consensus 367 ~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~dpip~~~~~-ilDg~ivLsr~ 417 (558)
.+-.|..... .-.+|++.+...+.+...+. ...+.. +.|+-|.|+..
T Consensus 139 ~l~~l~~~l~---~~~~t~llt~~~~~~~~~~~-~~~i~~~l~D~vI~L~~~ 186 (226)
T PF06745_consen 139 FLRALIKFLK---SRGVTTLLTSEMPSGSEDDG-TFGIEHYLADGVIELRYE 186 (226)
T ss_dssp HHHHHHHHHH---HTTEEEEEEEEESSSSSSSS-STSHHHHHSSEEEEEEEE
T ss_pred HHHHHHHHHH---HCCCEEEEEEccccCccccc-ccchhhhcccEEEEEEEE
Confidence 2334444432 22357777777654322111 112334 89999999864
No 68
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=98.15 E-value=1.7e-05 Score=80.33 Aligned_cols=184 Identities=20% Similarity=0.204 Sum_probs=113.2
Q ss_pred ceeeeeeeEeecccc--cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHH-------H
Q 008638 208 QILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREM-------I 278 (558)
Q Consensus 208 e~l~TGIkvID~l~P--igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~-------~ 278 (558)
+.+.|||.-+|-++- +-+|.-++|.|++|+|||+++.+.+.+.++. +.-|+|+..-|...++.+.+..| .
T Consensus 3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~ 81 (260)
T COG0467 3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGARE-GEPVLYVSTEESPEELLENARSFGWDLEVYI 81 (260)
T ss_pred ccccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhc-CCcEEEEEecCCHHHHHHHHHHcCCCHHHHh
Confidence 457899999999999 8999999999999999999999999998765 66799999999998887766532 2
Q ss_pred HhcccccCcccCCCeEEEEEecCCCCHH--H--HHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCC
Q 008638 279 ESGVIKLGDKQADSKCALVYGQMNEPPG--A--RARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRI 354 (558)
Q Consensus 279 e~~~~~~~~~~~~~~t~vV~~t~~ep~~--~--r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~ 354 (558)
+.+.+ ...-.+........ . -.......-.+-+.+.+ .+ ...+++||++.+......=...
T Consensus 82 ~~g~l---------~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~-~~-~~~~ViDsi~~~~~~~~~~~~~---- 146 (260)
T COG0467 82 EKGKL---------AILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEK-EG-ADRVVIDSITELTLYLNDPALV---- 146 (260)
T ss_pred hcCCE---------EEEEccccccccccccccCCccHHHHHHHHHHHHHH-hC-CCEEEEeCCchHhhhcCchHHH----
Confidence 22211 11111111111100 0 12234456677777887 35 6778899999654433221110
Q ss_pred CCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCCCCchhhhHhhhcCcEEEeehhhhhcC
Q 008638 355 PSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELG 422 (558)
Q Consensus 355 P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~dpip~~~~~ilDg~ivLsr~LA~~g 422 (558)
...+-.+.... .+.| +|++-+...+.+...+. ...-.+.||.|.|+....+-+
T Consensus 147 ----------r~~~~~l~~~~--~~~~-~t~~~~~~~~~~~~~~~--~~~~~~vdgvI~l~~~~~~~~ 199 (260)
T COG0467 147 ----------RRILLLLKRFL--KKLG-VTSLLTTEAPVEERGES--GVEEYIVDGVIRLDLKEIEGG 199 (260)
T ss_pred ----------HHHHHHHHHHH--HhCC-CEEEEEecccccCCCcc--ceEEEEEEEEEEEeeecccCc
Confidence 11111121111 2344 78776665444333331 112238999999998766643
No 69
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.09 E-value=9.9e-06 Score=70.31 Aligned_cols=145 Identities=23% Similarity=0.162 Sum_probs=83.2
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCC
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEP 304 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep 304 (558)
+|+.+.|+|++|+|||+++..++.+..+.+ ..++...++...+....... ......+..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~ 59 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-------------------LIIVGGKKA 59 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-------------------hhhhhccCC
Confidence 478999999999999999998887654321 24555555554444322211 001111222
Q ss_pred HHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCcee
Q 008638 305 PGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSIT 384 (558)
Q Consensus 305 ~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT 384 (558)
...+.......++.|++.. ..++++|++.++.............. ...+ ........+.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~-----~~viiiDei~~~~~~~~~~~~~~~~~-------------~~~~---~~~~~~~~~~ 118 (148)
T smart00382 60 SGSGELRLRLALALARKLK-----PDVLILDEITSLLDAEQEALLLLLEE-------------LRLL---LLLKSEKNLT 118 (148)
T ss_pred CCCHHHHHHHHHHHHHhcC-----CCEEEEECCcccCCHHHHHHHHhhhh-------------hHHH---HHHHhcCCCE
Confidence 3334444555666666533 58999999998888777665443332 0001 1111234556
Q ss_pred eEEEEeecCCCCCCchhhhHhhhcCcEEEee
Q 008638 385 SVQAIYVPADDLTDPAPATTFAHLDATTVLS 415 (558)
Q Consensus 385 ~i~~V~v~~dD~~dpip~~~~~ilDg~ivLs 415 (558)
.+.+... ...+.+..++..+|.++.+.
T Consensus 119 ~i~~~~~----~~~~~~~~~~~~~~~~~~~~ 145 (148)
T smart00382 119 VILTTND----EKDLGPALLRRRFDRRIVLL 145 (148)
T ss_pred EEEEeCC----CccCchhhhhhccceEEEec
Confidence 6666553 44556666666777776654
No 70
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.87 E-value=6.7e-05 Score=73.60 Aligned_cols=51 Identities=31% Similarity=0.434 Sum_probs=42.7
Q ss_pred eeeeeeEeecccc--cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEE
Q 008638 210 LVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFA 261 (558)
Q Consensus 210 l~TGIkvID~l~P--igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~ 261 (558)
+.|||..+|-++. +.+|.=+.|+|++|+|||+|+.+++.+.++. +.-++|+
T Consensus 1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~-g~~v~yi 53 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ-GKKVAYI 53 (218)
T ss_pred CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 4799999999996 7889999999999999999999999887654 3344554
No 71
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.82 E-value=0.00015 Score=72.16 Aligned_cols=71 Identities=20% Similarity=0.235 Sum_probs=56.8
Q ss_pred cceeeeeeeEeecccc--cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhc
Q 008638 207 QQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (558)
Q Consensus 207 ~e~l~TGIkvID~l~P--igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~ 281 (558)
.+.+.|||..+|-++. +-+|.-+.|.|++|+|||+|+..++.+.++ ++.-++|+..-|..+ ++++.+.+.|
T Consensus 4 ~~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~e~~~~---~~~~~~~~~g 76 (234)
T PRK06067 4 KEIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITTENTSK---SYLKQMESVK 76 (234)
T ss_pred ceEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEcCCCHH---HHHHHHHHCC
Confidence 4569999999999985 779999999999999999999999887665 356778888866554 4556665554
No 72
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.81 E-value=0.00012 Score=81.46 Aligned_cols=182 Identities=14% Similarity=0.153 Sum_probs=102.2
Q ss_pred ccceeeeeeeEeecccc--cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhccc
Q 008638 206 EQQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283 (558)
Q Consensus 206 ~~e~l~TGIkvID~l~P--igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~ 283 (558)
..+.+.|||..+|-++. +-+|.-++|.|++|+|||+|+..++.+.++. +.-++|+..-|...++ .+.+..-|+
T Consensus 251 ~~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~-g~~~~yis~e~~~~~i---~~~~~~~g~- 325 (509)
T PRK09302 251 SNERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRR-GERCLLFAFEESRAQL---IRNARSWGI- 325 (509)
T ss_pred ccccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecCCHHHH---HHHHHHcCC-
Confidence 45668999999999986 8899999999999999999999999887653 4567777766655444 444433331
Q ss_pred ccCcccCCCeEEEEEecC-CCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCC
Q 008638 284 KLGDKQADSKCALVYGQM-NEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQP 362 (558)
Q Consensus 284 ~~~~~~~~~~t~vV~~t~-~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp 362 (558)
++.......+..++.... ........ ..+.+...+ .+-+ ++++||++-+...... .
T Consensus 326 ~~~~~~~~g~l~i~~~~~~~~~~~~~~------~~i~~~i~~-~~~~-~vVIDslt~l~~~~~~---------------~ 382 (509)
T PRK09302 326 DLEKMEEKGLLKIICARPESYGLEDHL------IIIKREIEE-FKPS-RVAIDPLSALARGGSL---------------N 382 (509)
T ss_pred ChHHHhhcCCceeecCCcccCCHHHHH------HHHHHHHHH-cCCC-EEEEcCHHHHHHhCCH---------------H
Confidence 110000001122222111 11111111 123333333 3444 7899999976543210 0
Q ss_pred ccccchhhhHhhhcCCCCCceeeEEEEeecCCCCCCchh-hhHhhhcCcEEEeehhh
Q 008638 363 TLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAP-ATTFAHLDATTVLSRQI 418 (558)
Q Consensus 363 ~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~dpip-~~~~~ilDg~ivLsr~L 418 (558)
.+-..+..|...+. .-.+|++.|..++...-.++.. ..+-.+.|+-|.|+..-
T Consensus 383 ~~~~~l~~l~~~~k---~~~~t~l~t~~~~~~~g~~~~~~~~~~~l~D~vI~L~~~~ 436 (509)
T PRK09302 383 EFRQFVIRLTDYLK---SEEITGLFTNLTPDFMGSHSITESHISSLTDTWILLQYVE 436 (509)
T ss_pred HHHHHHHHHHHHHH---hCCCeEEEEeccccccCCCCCCcCceEEeeeEEEEEEEee
Confidence 11112223332222 1236888887766532222222 23567889999998643
No 73
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.64 E-value=0.00016 Score=71.48 Aligned_cols=122 Identities=21% Similarity=0.218 Sum_probs=69.0
Q ss_pred eeeeeeEeecccc--cccCceeeeecCCCCChhHHHHHHHHHHHhhc-----CCEEEEEEecCCchhHHHHHHHHHHhcc
Q 008638 210 LVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAH-----GGFSVFAGVGERTREGNDLYREMIESGV 282 (558)
Q Consensus 210 l~TGIkvID~l~P--igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~-----~~v~V~~~iGER~rEv~d~~~e~~e~~~ 282 (558)
+.|||+.+|-++. +.+|..+.|.|++|+|||+|+++++.+..... +.-++|+-. |..-...++.+-+...+.
T Consensus 1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~-e~~~~~~rl~~~~~~~~~ 79 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDT-EGTFRPERLVQIAERFGL 79 (235)
T ss_pred CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeC-CCCcCHHHHHHHHHHhcc
Confidence 4699999999986 88999999999999999999999987643321 134556543 332222233332222221
Q ss_pred cccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHH
Q 008638 283 IKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342 (558)
Q Consensus 283 ~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~ 342 (558)
. .+...++..++. ..+ .. .....+ ..+-+.+.. .++--++++||++.+.+
T Consensus 80 ~---~~~~~~~i~~~~-~~~-~~--~l~~~l--~~l~~~l~~-~~~~~liVIDSis~~~~ 129 (235)
T cd01123 80 D---PEEVLDNIYVAR-AYN-SD--HQLQLL--EELEAILIE-SSRIKLVIVDSVTALFR 129 (235)
T ss_pred C---hHhHhcCEEEEe-cCC-HH--HHHHHH--HHHHHHHhh-cCCeeEEEEeCcHHHHH
Confidence 1 111233433332 211 11 111111 123334443 33777999999997653
No 74
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.52 E-value=0.00064 Score=69.34 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=46.7
Q ss_pred eeeeeeEeeccc----------------ccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCc
Q 008638 210 LVTGIKVVDLLA----------------PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267 (558)
Q Consensus 210 l~TGIkvID~l~----------------PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~ 267 (558)
+.|||+-+|-++ =+-+|.-++|.|++|+|||+++++++.+.+++ +.-++|+-.-|..
T Consensus 4 ~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~-Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 4 VPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQASR-GNPVLFVTVESPA 76 (259)
T ss_pred ccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecCCc
Confidence 579999999986 46799999999999999999999998887664 4556776665543
No 75
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.44 E-value=0.00029 Score=74.32 Aligned_cols=111 Identities=25% Similarity=0.361 Sum_probs=73.8
Q ss_pred ceeeeeeeEeecccc---cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccc
Q 008638 208 QILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIK 284 (558)
Q Consensus 208 e~l~TGIkvID~l~P---igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~ 284 (558)
+.+.||+..+|.++. +-+|.-+.|+|++|+|||+|+.+++.+.++. ++.++|+-.-+..... .+...|+-
T Consensus 34 ~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~-g~~v~yId~E~~~~~~-----~a~~lGvd- 106 (321)
T TIGR02012 34 ETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDAEHALDPV-----YARKLGVD- 106 (321)
T ss_pred ceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEcccchhHHH-----HHHHcCCC-
Confidence 458999999999998 7799999999999999999999998887654 5667777443322211 12222321
Q ss_pred cCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHH
Q 008638 285 LGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342 (558)
Q Consensus 285 ~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~ 342 (558)
.++ +++.+.+. .++ ++.+.+.+-. .+.--++++||++-+..
T Consensus 107 ------~~~--l~v~~p~~--~eq------~l~~~~~li~-~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 107 ------IDN--LLVSQPDT--GEQ------ALEIAETLVR-SGAVDIIVVDSVAALVP 147 (321)
T ss_pred ------HHH--eEEecCCC--HHH------HHHHHHHHhh-ccCCcEEEEcchhhhcc
Confidence 122 23333332 222 3455666554 57777999999997664
No 76
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.43 E-value=0.00058 Score=67.05 Aligned_cols=44 Identities=32% Similarity=0.421 Sum_probs=38.9
Q ss_pred eeeeeeEeeccc--ccccCceeeeecCCCCChhHHHHHHHHHHHhh
Q 008638 210 LVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (558)
Q Consensus 210 l~TGIkvID~l~--PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~ 253 (558)
+.|||..+|-++ -+-+|+-..|+|++|+|||+|+.+++.+.++.
T Consensus 1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~ 46 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLP 46 (226)
T ss_pred CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcc
Confidence 479999999987 48899999999999999999999998876543
No 77
>PRK09354 recA recombinase A; Provisional
Probab=97.39 E-value=0.00039 Score=74.10 Aligned_cols=112 Identities=22% Similarity=0.357 Sum_probs=76.4
Q ss_pred cceeeeeeeEeecccc---cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhccc
Q 008638 207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283 (558)
Q Consensus 207 ~e~l~TGIkvID~l~P---igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~ 283 (558)
.+.+.||+..+|.++. +-+|.-+.|+|++|+|||+|+.+++.+.++ .++.++|+-.=+.... +-+...|+-
T Consensus 38 ~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~-~G~~~~yId~E~s~~~-----~~a~~lGvd 111 (349)
T PRK09354 38 VEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK-AGGTAAFIDAEHALDP-----VYAKKLGVD 111 (349)
T ss_pred CceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEECCccchHH-----HHHHHcCCC
Confidence 3568999999999998 667888999999999999999999888655 3577888765443332 123333321
Q ss_pred ccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHH
Q 008638 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342 (558)
Q Consensus 284 ~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~ 342 (558)
.++ +++.+.+. .++ ++.+.+.+-. .+.--++++||++-+..
T Consensus 112 -------ld~--lli~qp~~--~Eq------~l~i~~~li~-s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 112 -------IDN--LLVSQPDT--GEQ------ALEIADTLVR-SGAVDLIVVDSVAALVP 152 (349)
T ss_pred -------HHH--eEEecCCC--HHH------HHHHHHHHhh-cCCCCEEEEeChhhhcc
Confidence 123 33333332 222 3566666665 57888999999996653
No 78
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.39 E-value=0.00046 Score=71.80 Aligned_cols=123 Identities=20% Similarity=0.219 Sum_probs=74.1
Q ss_pred cceeeeeeeEeecccc--cccCceeeeecCCCCChhHHHHHHHHHHHhh-----cCCEEEEEEecC--CchhHHHHHHHH
Q 008638 207 QQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGFSVFAGVGE--RTREGNDLYREM 277 (558)
Q Consensus 207 ~e~l~TGIkvID~l~P--igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~-----~~~v~V~~~iGE--R~rEv~d~~~e~ 277 (558)
...+.||++.+|-++- +.+|.-+.|+|++|+|||+|+.+++.+.+.. ..+-+||+-.-+ +++...++.+
T Consensus 74 ~~~~~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~-- 151 (310)
T TIGR02236 74 IGKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAE-- 151 (310)
T ss_pred CCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHH--
Confidence 3457899999999987 7789999999999999999999998775421 124678887766 3444433322
Q ss_pred HHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCC-cEEeecccchhHHH
Q 008638 278 IESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQ-DVLLFIDNIFRFTQ 342 (558)
Q Consensus 278 ~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~-dVLl~~DsltR~a~ 342 (558)
..++- .+...++.. ++...+..+ .. +.--.+.+++.+ .+. -=++++||++-+-+
T Consensus 152 -~~gl~---~~~~~~~i~-i~~~~~~~~--~~---~lld~l~~~i~~-~~~~~~lVVIDSisa~~r 206 (310)
T TIGR02236 152 -ARGLD---PDEVLKNIY-VARAYNSNH--QM---LLVEKAEDLIKE-LNNPVKLLIVDSLTSHFR 206 (310)
T ss_pred -HcCCC---HHHHhhceE-EEecCCHHH--HH---HHHHHHHHHHHh-cCCCceEEEEecchHhhh
Confidence 22211 111123333 333332221 11 112235666665 332 33999999997644
No 79
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.31 E-value=0.00039 Score=73.50 Aligned_cols=112 Identities=23% Similarity=0.357 Sum_probs=75.0
Q ss_pred cceeeeeeeEeecccc---cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhccc
Q 008638 207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283 (558)
Q Consensus 207 ~e~l~TGIkvID~l~P---igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~ 283 (558)
.+.+.||+..+|.++. +-+|.=+.|+|++|+|||+|+.+++.+.++. ++.++|+-.=+... . +.+...|+-
T Consensus 33 ~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~-g~~~vyId~E~~~~-~----~~a~~lGvd 106 (325)
T cd00983 33 VEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKL-GGTVAFIDAEHALD-P----VYAKKLGVD 106 (325)
T ss_pred CceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEECccccHH-H----HHHHHcCCC
Confidence 3569999999999998 7788899999999999999999998886653 56777775433221 1 122222321
Q ss_pred ccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHH
Q 008638 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342 (558)
Q Consensus 284 ~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~ 342 (558)
.++ +++.+.+. .+ -++.+++.+-. .+.--++++||++-+..
T Consensus 107 -------~~~--l~v~~p~~--~e------q~l~i~~~li~-s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 107 -------LDN--LLISQPDT--GE------QALEIADSLVR-SGAVDLIVVDSVAALVP 147 (325)
T ss_pred -------HHH--heecCCCC--HH------HHHHHHHHHHh-ccCCCEEEEcchHhhcc
Confidence 122 23333332 22 24556677765 57788999999996653
No 80
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.31 E-value=0.0019 Score=63.66 Aligned_cols=56 Identities=30% Similarity=0.504 Sum_probs=46.4
Q ss_pred cceeeeeeeEeeccc--ccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEe
Q 008638 207 QQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV 263 (558)
Q Consensus 207 ~e~l~TGIkvID~l~--PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~i 263 (558)
++.+.|||..+|-++ -+-+|.-+.|.|++|+|||+|+.+++.+.++. +.-++|+-.
T Consensus 2 ~~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~-~~~v~yi~~ 59 (225)
T PRK09361 2 DERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKN-GKKVIYIDT 59 (225)
T ss_pred CccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEC
Confidence 456899999999998 57789999999999999999999999888764 344566544
No 81
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.29 E-value=0.0017 Score=72.14 Aligned_cols=193 Identities=12% Similarity=0.108 Sum_probs=112.0
Q ss_pred ccceeeeeeeEeecccc--cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhccc
Q 008638 206 EQQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283 (558)
Q Consensus 206 ~~e~l~TGIkvID~l~P--igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~ 283 (558)
..+.+.|||.-+|-++- +.+|.-++|.|++|+|||+|+++++.+.+++ +.-++|+.--|...+. .+.+..-|+.
T Consensus 241 ~~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~-ge~~~y~s~eEs~~~i---~~~~~~lg~~ 316 (484)
T TIGR02655 241 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN-KERAILFAYEESRAQL---LRNAYSWGID 316 (484)
T ss_pred cccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeeCCHHHH---HHHHHHcCCC
Confidence 56679999999999874 8899999999999999999999999887763 5678898877765544 5555554421
Q ss_pred ccCcccCCCeEEEEEecC--CCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCC
Q 008638 284 KLGDKQADSKCALVYGQM--NEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQ 361 (558)
Q Consensus 284 ~~~~~~~~~~t~vV~~t~--~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYp 361 (558)
... ...+....+.... ...+... .-.+-+...+ .+.+ ++++||++-|..+... .
T Consensus 317 -~~~-~~~~g~l~~~~~~p~~~~~~~~------~~~i~~~i~~-~~~~-~vvIDsi~~~~~~~~~----------~---- 372 (484)
T TIGR02655 317 -FEE-MEQQGLLKIICAYPESAGLEDH------LQIIKSEIAD-FKPA-RIAIDSLSALARGVSN----------N---- 372 (484)
T ss_pred -hHH-HhhCCcEEEEEcccccCChHHH------HHHHHHHHHH-cCCC-EEEEcCHHHHHHhcCH----------H----
Confidence 111 0011112222221 1112221 1122222233 3444 7899999977554311 0
Q ss_pred CccccchhhhHhhhcCCCCCceeeEEEEeecC--CCCCCchh-hhHhhhcCcEEEeehhhhhcCCcCcccCCCC
Q 008638 362 PTLATDLGGLQERITTTKKGSITSVQAIYVPA--DDLTDPAP-ATTFAHLDATTVLSRQISELGIYPAVDPLDS 432 (558)
Q Consensus 362 p~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~--dD~~dpip-~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S 432 (558)
.+-..+.+|.+-+ +.-.||.+.|..++. ++. +++ ..+-++.|+-|.|...-.+....-+|-++++
T Consensus 373 -~~r~~~~~l~~~l---k~~~it~~~t~~~~~~~~~~--~~~~~~~s~l~D~ii~l~~~e~~g~~~r~i~V~K~ 440 (484)
T TIGR02655 373 -AFRQFVIGVTGYA---KQEEITGFFTNTSDQFMGSH--SITDSHISTITDTILMLQYVEIRGEMSRAINVFKM 440 (484)
T ss_pred -HHHHHHHHHHHHH---hhCCCeEEEeecccccccCC--ccCCCCeeEeeeEEEEEEEEecCCEEEEEEEEEEc
Confidence 0011122232221 344578888866654 222 222 2345688998888766555445556666665
No 82
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.26 E-value=0.00042 Score=69.50 Aligned_cols=61 Identities=21% Similarity=0.328 Sum_probs=51.8
Q ss_pred eeeeeeEeecccc--cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHH
Q 008638 210 LVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGN 271 (558)
Q Consensus 210 l~TGIkvID~l~P--igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~ 271 (558)
+.|||.-+|-++. +-+|.-++|.|++|+|||+|+++++.+.++ ++.-++|+...|...++.
T Consensus 3 i~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~-~ge~~lyvs~ee~~~~i~ 65 (237)
T TIGR03877 3 VKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ-MGEPGIYVALEEHPVQVR 65 (237)
T ss_pred cccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcEEEEEeeCCHHHHH
Confidence 6899999999875 779999999999999999999999887664 356788999888766543
No 83
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.24 E-value=0.0015 Score=69.72 Aligned_cols=123 Identities=16% Similarity=0.174 Sum_probs=74.4
Q ss_pred cceeeeeeeEeecccc--cccCceeeeecCCCCChhHHHHHHHHHHHh--hc---CCEEEEEEecC--CchhHHHHHHHH
Q 008638 207 QQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAK--AH---GGFSVFAGVGE--RTREGNDLYREM 277 (558)
Q Consensus 207 ~e~l~TGIkvID~l~P--igkGqr~gIfGg~g~GKT~L~~~~i~n~a~--~~---~~v~V~~~iGE--R~rEv~d~~~e~ 277 (558)
...+.||++.+|-++- |-+|.=..|+|++|+|||+|+++++.+... .. .+-++|+-.-+ +++.+.++.+.|
T Consensus 105 ~~~isTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~ 184 (344)
T PLN03187 105 VVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERF 184 (344)
T ss_pred CceecCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHc
Confidence 4569999999999987 668899999999999999999998766432 11 24567776655 555554444332
Q ss_pred HHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHH
Q 008638 278 IESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343 (558)
Q Consensus 278 ~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A 343 (558)
|+ ..+..+++ + .+.....+ ....... ..+.+.+.+ +.-=||++||++-+-++
T Consensus 185 ---g~---d~~~~l~~-I-~~~~~~~~-e~~~~~l---~~l~~~i~~--~~~~LvVIDSital~r~ 236 (344)
T PLN03187 185 ---GM---DADAVLDN-I-IYARAYTY-EHQYNLL---LGLAAKMAE--EPFRLLIVDSVIALFRV 236 (344)
T ss_pred ---CC---ChhhhcCe-E-EEecCCCH-HHHHHHH---HHHHHHHHh--cCCCEEEEeCcHHhhhc
Confidence 21 11112334 2 23333222 2222211 233344544 34558899999976443
No 84
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.23 E-value=0.0036 Score=63.39 Aligned_cols=66 Identities=23% Similarity=0.226 Sum_probs=50.4
Q ss_pred ceeeeeeeEeeccc-ccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHH
Q 008638 208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDL 273 (558)
Q Consensus 208 e~l~TGIkvID~l~-PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~ 273 (558)
+-+.||+..+|-++ -+.+|.-+.|.|++|+|||+++.+++.+.++.++.-++|+-.-+...+..+.
T Consensus 11 ~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r 77 (271)
T cd01122 11 EEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARR 77 (271)
T ss_pred cCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHH
Confidence 35779999999975 4778999999999999999999999988776544445566665655555443
No 85
>PRK04328 hypothetical protein; Provisional
Probab=97.20 E-value=0.00056 Score=69.32 Aligned_cols=63 Identities=22% Similarity=0.297 Sum_probs=53.6
Q ss_pred eeeeeeeEeecccc--cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHH
Q 008638 209 ILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGND 272 (558)
Q Consensus 209 ~l~TGIkvID~l~P--igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d 272 (558)
.+.|||.-+|-++. +-+|.-++|.|++|+|||+|+.+++.+.++. +.-++|+...|.++++.+
T Consensus 4 rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~-ge~~lyis~ee~~~~i~~ 68 (249)
T PRK04328 4 RVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGVYVALEEHPVQVRR 68 (249)
T ss_pred eecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEeeCCHHHHHH
Confidence 47899999999986 5699999999999999999999998876543 567899999998776543
No 86
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.15 E-value=0.00055 Score=75.89 Aligned_cols=70 Identities=20% Similarity=0.210 Sum_probs=57.5
Q ss_pred eeeeeeeEeecccc--cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhc
Q 008638 209 ILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (558)
Q Consensus 209 ~l~TGIkvID~l~P--igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~ 281 (558)
.+.|||.-+|-++. +-+|.-++|.|++|+|||+|+++++.+.+++++.-++|+..-|..++. ++.+..-|
T Consensus 2 r~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l---~~~~~~~G 73 (484)
T TIGR02655 2 KIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDI---IKNARSFG 73 (484)
T ss_pred cCCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHH---HHHHHHcC
Confidence 36899999999987 889999999999999999999999887666545678999888877665 44454444
No 87
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.11 E-value=0.0048 Score=58.38 Aligned_cols=43 Identities=23% Similarity=0.344 Sum_probs=33.5
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHH
Q 008638 229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGND 272 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d 272 (558)
++|.|++|+|||+|+.+++.+.+++ +.-++|+..-|..+++.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~-g~~v~~~s~e~~~~~~~~ 44 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR-GEPGLYVTLEESPEELIE 44 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCCCHHHHHH
Confidence 5789999999999999999887764 445677777776666544
No 88
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=97.07 E-value=0.0014 Score=72.35 Aligned_cols=226 Identities=6% Similarity=-0.058 Sum_probs=189.2
Q ss_pred EEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhc
Q 008638 297 VYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERIT 376 (558)
Q Consensus 297 V~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~ 376 (558)
.....+.+..++..+-++.+.+++++++ -++|+=+.++.+.+++.+++|...-+...+....|+-..-.-|++.+++..
T Consensus 287 RT~liaNTSnMPVAAREasIYtGiTiaE-Y~RDmGy~v~lmADSTSRWAEAlREisgRleEmPgeegyPaYL~srlA~fY 365 (588)
T COG1155 287 RTVLIANTSNMPVAAREASIYTGITIAE-YYRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGSRLAEFY 365 (588)
T ss_pred eeeEeecCccchHHHhhhhhhhhhhHHH-HHHhhhhhhHHhhchHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHH
Confidence 3445677888999999999999999999 699999999999999999999998888889999999988888888888877
Q ss_pred CCCC-------CceeeEEEEeecCCCCCCchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccCh--HHH
Q 008638 377 TTKK-------GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGE--EHY 447 (558)
Q Consensus 377 ~~~~-------GSIT~i~~V~v~~dD~~dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~--~h~ 447 (558)
...| +++|..-||.-+..+...++.+.+-+.+=..|-+.-.|..+.++|-+.|..+++-.-+ .+.+. .++
T Consensus 366 ERaG~v~~~~~~~r~GsvtV~gaVSPpGGdfSEPVtq~Tlriv~vFw~Ld~~la~~rhfPaInwl~syS-~Y~~~~~~~~ 444 (588)
T COG1155 366 ERAGRVRLVSPEERFGSITVIGAVSPPGGDFSEPVTQNTLRVVRVFWALDAALANRRHFPSINWLNSYS-LYTEDLRSWY 444 (588)
T ss_pred HhcCeeeecCCCcceEEEEEecCCCCCCCCcCcccchheeeeeeeecccchhhhhcccCcccChHHHHH-HHHHHHHHHh
Confidence 5555 5667778888888999999999999999999999999999999999999999888753 33331 222
Q ss_pred H-----HHHHHHHHHHccHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHH
Q 008638 448 N-----TARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQG 522 (558)
Q Consensus 448 ~-----~a~~~r~~La~y~el~~ii~i~G~~~l~~~~~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~ 522 (558)
. .-.++|..+.++-+.++-++..+..-+.+...........+.+.+.|.|...+.|... ..|.++.++..-++.
T Consensus 445 ~~~v~~~~~~~r~~a~~~Lq~e~elqeiv~lVG~eal~e~~~~il~va~~ire~fLqQnafd~v-D~~~~~~kq~~mm~~ 523 (588)
T COG1155 445 DENVSPEWGALRDQAMEILQRESELQEIVQLVGYDALPEKEKSILDVARIIREDFLQQNAFDEI-DAYCSLRKQYLMLKA 523 (588)
T ss_pred hcccCchHHHHHHHHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHhhcccCcc-cccCCHHHHHHHHHH
Confidence 2 1445688899999999988988988888777778888888889999999998888833 345788888888887
Q ss_pred HHc
Q 008638 523 VLD 525 (558)
Q Consensus 523 il~ 525 (558)
|..
T Consensus 524 i~~ 526 (588)
T COG1155 524 IME 526 (588)
T ss_pred HHH
Confidence 753
No 89
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.03 E-value=0.0031 Score=66.37 Aligned_cols=123 Identities=17% Similarity=0.171 Sum_probs=71.9
Q ss_pred ccceeeeeeeEeecccc--cccCceeeeecCCCCChhHHHHHHHHHHHhh-----cCCEEEEEEecC--CchhHHHHHHH
Q 008638 206 EQQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGFSVFAGVGE--RTREGNDLYRE 276 (558)
Q Consensus 206 ~~e~l~TGIkvID~l~P--igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~-----~~~v~V~~~iGE--R~rEv~d~~~e 276 (558)
....+.||++.+|-++- +.+|.=..|+|++|+|||+|+++++.+.... .++-++|+-.-+ +++.+.++.+.
T Consensus 74 ~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~ 153 (313)
T TIGR02238 74 KVLKITTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAER 153 (313)
T ss_pred cCceeCCCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 34568999999999976 7789999999999999999999988654321 124567766544 24444333322
Q ss_pred HHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHH
Q 008638 277 MIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342 (558)
Q Consensus 277 ~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~ 342 (558)
| ++ ..+..+++ +.++ .... ....... -..+.+.+.+ ++--|+++||++-+-+
T Consensus 154 ~---g~---d~~~~l~~-i~~~-~~~~-~e~~~~~---l~~l~~~i~~--~~~~LvVIDSisal~r 205 (313)
T TIGR02238 154 F---GV---DPDAVLDN-ILYA-RAYT-SEHQMEL---LDYLAAKFSE--EPFRLLIVDSIMALFR 205 (313)
T ss_pred c---CC---ChHHhcCc-EEEe-cCCC-HHHHHHH---HHHHHHHhhc--cCCCEEEEEcchHhhh
Confidence 2 21 11112233 2332 2221 1111111 1234445544 4455799999986544
No 90
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.02 E-value=0.001 Score=65.72 Aligned_cols=60 Identities=23% Similarity=0.352 Sum_probs=47.8
Q ss_pred eeeeeeEeecccc--cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhH
Q 008638 210 LVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG 270 (558)
Q Consensus 210 l~TGIkvID~l~P--igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv 270 (558)
+.|||.-+|-++. +-+|.-++|.|++|+|||+|+..++.+.++. +.-++|+...+..+++
T Consensus 2 i~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~-g~~~~~is~e~~~~~i 63 (229)
T TIGR03881 2 LSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD-GDPVIYVTTEESRESI 63 (229)
T ss_pred cCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhc-CCeEEEEEccCCHHHH
Confidence 5799999999875 7799999999999999999999988776553 4556777665554433
No 91
>PTZ00035 Rad51 protein; Provisional
Probab=97.02 E-value=0.0024 Score=67.87 Aligned_cols=46 Identities=28% Similarity=0.294 Sum_probs=39.7
Q ss_pred cccceeeeeeeEeecccc--cccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 205 TEQQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 205 ~~~e~l~TGIkvID~l~P--igkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.....+.||++.+|-++- +.+|.-..|+|++|+|||+|++.++.+.
T Consensus 95 ~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 95 KNIIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred ccCccccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 345679999999999984 7789999999999999999998887654
No 92
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.88 E-value=0.0013 Score=73.10 Aligned_cols=65 Identities=26% Similarity=0.307 Sum_probs=55.9
Q ss_pred ceeeeeeeEeeccc--ccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHH
Q 008638 208 QILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGND 272 (558)
Q Consensus 208 e~l~TGIkvID~l~--PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d 272 (558)
+.+.|||..+|-++ -+.+|.-++|.|++|+|||+|+++++.+.++.++.-|+|+..-|..+++.+
T Consensus 11 ~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~ 77 (509)
T PRK09302 11 EKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIR 77 (509)
T ss_pred ccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHH
Confidence 45799999999997 488999999999999999999999998877765667899999997766544
No 93
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.83 E-value=0.0088 Score=58.19 Aligned_cols=42 Identities=31% Similarity=0.449 Sum_probs=34.0
Q ss_pred cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecC
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGE 265 (558)
+.+|+-+.|.|++|+|||+++++++.+.++. +.-++|+-.-+
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~-g~~v~yi~~e~ 50 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAARQ-GKKVVYIDTEG 50 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCC
Confidence 5688999999999999999999999887654 45567766643
No 94
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.82 E-value=0.0081 Score=59.32 Aligned_cols=65 Identities=23% Similarity=0.351 Sum_probs=49.0
Q ss_pred eeeEeeccc--ccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhc
Q 008638 213 GIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (558)
Q Consensus 213 GIkvID~l~--PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~ 281 (558)
||+.+|-++ -+.+|.-++|.|++|+|||+++.+++.+.++. +.-++|+-.-|..+++ .+.+...|
T Consensus 1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~~~~~l---~~~~~~~~ 67 (224)
T TIGR03880 1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEEREERI---LGYAKSKG 67 (224)
T ss_pred CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCHHHH---HHHHHHcC
Confidence 677778776 45589999999999999999999999886654 5667888887765554 44444433
No 95
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.81 E-value=0.0033 Score=73.29 Aligned_cols=110 Identities=23% Similarity=0.370 Sum_probs=73.4
Q ss_pred ceeeeeeeEeecccc---cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccc
Q 008638 208 QILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIK 284 (558)
Q Consensus 208 e~l~TGIkvID~l~P---igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~ 284 (558)
+.+.||+..+|.++. +-+|.-+.|+|++|+|||+|+.+++.+.++. ++.++|+-.-+..+. + -+...|+-
T Consensus 39 ~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~-G~~v~yId~E~t~~~--~---~A~~lGvD- 111 (790)
T PRK09519 39 SVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA-GGVAAFIDAEHALDP--D---YAKKLGVD- 111 (790)
T ss_pred ceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEECCccchhH--H---HHHHcCCC-
Confidence 468999999999998 7789999999999999999999988776543 467777765554431 1 22222321
Q ss_pred cCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHH
Q 008638 285 LGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (558)
Q Consensus 285 ~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a 341 (558)
.++. ++.+.+ +.++ .+.+++.+-. ++.--||++||++-+.
T Consensus 112 ------l~~l--lv~~~~--~~E~------~l~~i~~lv~-~~~~~LVVIDSI~aL~ 151 (790)
T PRK09519 112 ------TDSL--LVSQPD--TGEQ------ALEIADMLIR-SGALDIVVIDSVAALV 151 (790)
T ss_pred ------hhHe--EEecCC--CHHH------HHHHHHHHhh-cCCCeEEEEcchhhhc
Confidence 1122 333332 2233 3444555544 4778899999998555
No 96
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.78 E-value=0.0042 Score=65.07 Aligned_cols=58 Identities=26% Similarity=0.320 Sum_probs=46.4
Q ss_pred ceeeeeeeEeecccc--cccCceeeeecCCCCChhHHHHHHHHHHHhhc-----CCEEEEEEecC
Q 008638 208 QILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAH-----GGFSVFAGVGE 265 (558)
Q Consensus 208 e~l~TGIkvID~l~P--igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~-----~~v~V~~~iGE 265 (558)
..+.||+.-+|-++. +-+|.-..|+|++|+|||+++.+++.+.+... ++-++|+-.-+
T Consensus 82 ~~~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 82 GKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 457899999999876 77899999999999999999999987754321 23567777665
No 97
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.77 E-value=0.0029 Score=69.79 Aligned_cols=58 Identities=22% Similarity=0.360 Sum_probs=47.1
Q ss_pred ceeeeeeeEeeccc--ccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCc
Q 008638 208 QILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267 (558)
Q Consensus 208 e~l~TGIkvID~l~--PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~ 267 (558)
+.+.|||.-+|-++ -+.+|+-++|.|++|+|||+|+.+++.+.++. +.-++|+ .||-.
T Consensus 74 ~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYv-s~EEs 133 (454)
T TIGR00416 74 PRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYV-SGEES 133 (454)
T ss_pred CccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEE-ECcCC
Confidence 45899999999998 49999999999999999999999998887764 2334555 46533
No 98
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.77 E-value=0.006 Score=65.73 Aligned_cols=58 Identities=29% Similarity=0.519 Sum_probs=46.5
Q ss_pred ceeeeeeeEeecccc--cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCc
Q 008638 208 QILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267 (558)
Q Consensus 208 e~l~TGIkvID~l~P--igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~ 267 (558)
+.+.|||.-+|-++- +.+|.-++|.|++|+|||+|+.+++.+.++. +.-++|+ .||..
T Consensus 62 ~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~-g~~VlYv-s~EEs 121 (372)
T cd01121 62 ERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR-GGKVLYV-SGEES 121 (372)
T ss_pred CccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEE-ECCcC
Confidence 458999999999985 8899999999999999999999999887764 2333444 45533
No 99
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.74 E-value=0.0048 Score=65.78 Aligned_cols=123 Identities=15% Similarity=0.195 Sum_probs=72.5
Q ss_pred cceeeeeeeEeecccc--cccCceeeeecCCCCChhHHHHHHHHHHHhh-----cCCEEEEEEecC--CchhHHHHHHHH
Q 008638 207 QQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGFSVFAGVGE--RTREGNDLYREM 277 (558)
Q Consensus 207 ~e~l~TGIkvID~l~P--igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~-----~~~v~V~~~iGE--R~rEv~d~~~e~ 277 (558)
...+.||++.+|-++. +-+|.=..|+|++|+|||+|++.++.+.... ..+-++|+-.-+ +++.+.++.+.|
T Consensus 102 ~~~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~ 181 (342)
T PLN03186 102 IIQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERF 181 (342)
T ss_pred cceeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHc
Confidence 3559999999999765 6788889999999999999999888764321 123567766655 444454443332
Q ss_pred HHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHH
Q 008638 278 IESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343 (558)
Q Consensus 278 ~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A 343 (558)
++ ..+..+++. .++...+ ........ ..+++.+.. ++=-||++||++-+-+.
T Consensus 182 ---~~---~~~~~l~~i-~~~~~~~--~e~~~~ll---~~~~~~~~~--~~~~LIVIDSI~alfr~ 233 (342)
T PLN03186 182 ---GL---NGADVLENV-AYARAYN--TDHQSELL---LEAASMMAE--TRFALMIVDSATALYRT 233 (342)
T ss_pred ---CC---Chhhhccce-EEEecCC--HHHHHHHH---HHHHHHhhc--cCCCEEEEeCcHHHHHH
Confidence 21 111122332 2333222 22222211 123334433 45568999999976543
No 100
>PF05729 NACHT: NACHT domain
Probab=96.68 E-value=0.0048 Score=56.47 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=30.4
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhhcC-----CEEEEEEecCCchh
Q 008638 228 KIGLFGGAGVGKTVLIMELINNVAKAHG-----GFSVFAGVGERTRE 269 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n~a~~~~-----~v~V~~~iGER~rE 269 (558)
-+.|.|++|+|||+++..++...++.+. .+.+|...++....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDS 48 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhc
Confidence 3679999999999999999988876542 24455555554443
No 101
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.60 E-value=0.0043 Score=62.56 Aligned_cols=21 Identities=38% Similarity=0.680 Sum_probs=15.2
Q ss_pred CcEEeecccchhHHHHHHHHH
Q 008638 328 QDVLLFIDNIFRFTQANSEVS 348 (558)
Q Consensus 328 ~dVLl~~DsltR~a~A~rEis 348 (558)
+.-+||+|.|.||-.++.|+=
T Consensus 101 ~~~ILFIDEIHRlnk~~qe~L 121 (233)
T PF05496_consen 101 EGDILFIDEIHRLNKAQQEIL 121 (233)
T ss_dssp TT-EEEECTCCC--HHHHHHH
T ss_pred CCcEEEEechhhccHHHHHHH
Confidence 344788899999999999974
No 102
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.56 E-value=0.0084 Score=66.04 Aligned_cols=56 Identities=29% Similarity=0.506 Sum_probs=45.6
Q ss_pred ceeeeeeeEeecccc--cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecC
Q 008638 208 QILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265 (558)
Q Consensus 208 e~l~TGIkvID~l~P--igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGE 265 (558)
+.+.|||.-+|-++. +.+|.-++|.|++|+|||+|+.+++.+.++. +.-++|+- +|
T Consensus 60 ~ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs-~E 117 (446)
T PRK11823 60 PRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVS-GE 117 (446)
T ss_pred CcccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEE-cc
Confidence 448999999999875 8899999999999999999999999887753 23345554 44
No 103
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.41 E-value=0.011 Score=62.41 Aligned_cols=44 Identities=32% Similarity=0.329 Sum_probs=38.0
Q ss_pred cceeeeeeeEeecccc--cccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 207 QQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 207 ~e~l~TGIkvID~l~P--igkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
...+.||++.+|-++. +-+|.=+.|.|++|+|||+|+++++.+.
T Consensus 75 ~~~~~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~ 120 (316)
T TIGR02239 75 VIQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTC 120 (316)
T ss_pred cceeCCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHH
Confidence 3458999999999765 6678899999999999999999988754
No 104
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.35 E-value=0.011 Score=59.42 Aligned_cols=68 Identities=18% Similarity=0.168 Sum_probs=49.7
Q ss_pred eeeeeeEeecccc--cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhc
Q 008638 210 LVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (558)
Q Consensus 210 l~TGIkvID~l~P--igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~ 281 (558)
+.|++.-+|-++. +-+|..++|.|++|+|||+|+..++.+.++. +.-++|+...|...+. ++.+.+.|
T Consensus 6 ~~~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~-g~~~~yi~~e~~~~~~---~~~~~~~g 75 (230)
T PRK08533 6 IELSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQN-GYSVSYVSTQLTTTEF---IKQMMSLG 75 (230)
T ss_pred EEEEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEEeCCCCHHHH---HHHHHHhC
Confidence 5677788887775 7789999999999999999988888776553 3456777766665444 44444333
No 105
>PRK05973 replicative DNA helicase; Provisional
Probab=96.32 E-value=0.022 Score=57.83 Aligned_cols=99 Identities=19% Similarity=0.228 Sum_probs=61.0
Q ss_pred ccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecC
Q 008638 222 PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQM 301 (558)
Q Consensus 222 PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~ 301 (558)
-+-+|.-+.|.|.+|+|||+++++++.+.+++ +.-++|+-.-|..++ +++.+...|+-.. .... .+.+...
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlEes~~~---i~~R~~s~g~d~~---~~~~--~~~~d~~ 130 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLEYTEQD---VRDRLRALGADRA---QFAD--LFEFDTS 130 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEeCCHHH---HHHHHHHcCCChH---Hhcc--ceEeecC
Confidence 47899999999999999999999999887764 445667766665444 4556666553211 1111 2233333
Q ss_pred CC-CHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhH
Q 008638 302 NE-PPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRF 340 (558)
Q Consensus 302 ~e-p~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~ 340 (558)
+. .+. .+-+++....+. =++++|+|+-+
T Consensus 131 d~~~~~----------~ii~~l~~~~~~-~lVVIDsLq~l 159 (237)
T PRK05973 131 DAICAD----------YIIARLASAPRG-TLVVIDYLQLL 159 (237)
T ss_pred CCCCHH----------HHHHHHHHhhCC-CEEEEEcHHHH
Confidence 32 211 123344432343 48999999855
No 106
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.27 E-value=0.079 Score=46.27 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=22.9
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
.+.-+.|.|++|+|||+|+..+.+...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 466799999999999999988877653
No 107
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.12 E-value=0.015 Score=61.50 Aligned_cols=109 Identities=26% Similarity=0.380 Sum_probs=67.2
Q ss_pred cceeeeeeeEeecccc---cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHH-Hhcc
Q 008638 207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMI-ESGV 282 (558)
Q Consensus 207 ~e~l~TGIkvID~l~P---igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~-e~~~ 282 (558)
.+.+.||+-.+|..++ +.+|.=+=|+|++++|||+|+..++.+..+. +..|+|+-+ |.. +..++. ..|+
T Consensus 31 ~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~-g~~~a~ID~-e~~-----ld~~~a~~lGv 103 (322)
T PF00154_consen 31 IEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQ-GGICAFIDA-EHA-----LDPEYAESLGV 103 (322)
T ss_dssp S-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-T-EEEEEES-SS--------HHHHHHTT-
T ss_pred cceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcc-cceeEEecC-ccc-----chhhHHHhcCc
Confidence 3678999999999988 5578888899999999999999998875443 567777655 322 223332 2342
Q ss_pred cccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhH
Q 008638 283 IKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRF 340 (558)
Q Consensus 283 ~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~ 340 (558)
- .++. ++.+.+. ..-++.++|.+.. .|.-.++++||+.-.
T Consensus 104 d-------l~rl--lv~~P~~--------~E~al~~~e~lir-sg~~~lVVvDSv~al 143 (322)
T PF00154_consen 104 D-------LDRL--LVVQPDT--------GEQALWIAEQLIR-SGAVDLVVVDSVAAL 143 (322)
T ss_dssp --------GGGE--EEEE-SS--------HHHHHHHHHHHHH-TTSESEEEEE-CTT-
T ss_pred c-------ccce--EEecCCc--------HHHHHHHHHHHhh-cccccEEEEecCccc
Confidence 1 2343 3333221 1345788888876 577778999998644
No 108
>PF13173 AAA_14: AAA domain
Probab=96.05 E-value=0.022 Score=51.54 Aligned_cols=24 Identities=42% Similarity=0.555 Sum_probs=20.4
Q ss_pred ceeeeecCCCCChhHHHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.-+.|.|++|||||||+.+++...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999887654
No 109
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.90 E-value=0.0071 Score=61.16 Aligned_cols=55 Identities=15% Similarity=0.298 Sum_probs=38.4
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHHH-hhcCCEEEEEEecCCchhHHHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNVA-KAHGGFSVFAGVGERTREGNDLYREMIE 279 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~a-~~~~~v~V~~~iGER~rEv~d~~~e~~e 279 (558)
...+.++|.|.+|+|||+|+.+..++.. +.+-+.++++-++..... .++++.+.+
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~-~~~~~~i~~ 72 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSL-EQLLEQILR 72 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCC-HHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccc-ccccccccc
Confidence 4566789999999999999999887632 222367778877776655 455555543
No 110
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.71 E-value=0.035 Score=49.28 Aligned_cols=94 Identities=19% Similarity=0.233 Sum_probs=50.8
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHHHhh----cCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEec
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNVAKA----HGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQ 300 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~a~~----~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t 300 (558)
+++-+.|.|++|+|||+++..+..+.... +..-.+++-+.... ...++++++.+. ++... ..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~----l~~~~--~~------- 68 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR-TPRDFAQEILEA----LGLPL--KS------- 68 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS-SHHHHHHHHHHH----HT-SS--SS-------
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC-CHHHHHHHHHHH----hCccc--cc-------
Confidence 34567789999999999999888765431 01223455555554 556677776553 11110 01
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHH
Q 008638 301 MNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (558)
Q Consensus 301 ~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a 341 (558)
..+.. ...-.+-++++. .+.++|++|+.-++.
T Consensus 69 -~~~~~------~l~~~~~~~l~~--~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 69 -RQTSD------ELRSLLIDALDR--RRVVLLVIDEADHLF 100 (131)
T ss_dssp -TS-HH------HHHHHHHHHHHH--CTEEEEEEETTHHHH
T ss_pred -cCCHH------HHHHHHHHHHHh--cCCeEEEEeChHhcC
Confidence 11111 111334455554 344899999998764
No 111
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.62 E-value=0.03 Score=60.61 Aligned_cols=32 Identities=31% Similarity=0.528 Sum_probs=26.4
Q ss_pred HHHHHHhHHhCCCcEEeecccchhHHHHHHHHH
Q 008638 316 LTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVS 348 (558)
Q Consensus 316 ~tiAEyfRd~~G~dVLl~~DsltR~a~A~rEis 348 (558)
+.-|+-++. .|+..+||+|.+.||-.++.+.-
T Consensus 93 ~e~a~~~~~-~gr~tiLflDEIHRfnK~QQD~l 124 (436)
T COG2256 93 IEEARKNRL-LGRRTILFLDEIHRFNKAQQDAL 124 (436)
T ss_pred HHHHHHHHh-cCCceEEEEehhhhcChhhhhhh
Confidence 344566676 69999999999999999998764
No 112
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.38 E-value=0.07 Score=56.23 Aligned_cols=100 Identities=14% Similarity=0.253 Sum_probs=53.6
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHHHhhcCC----E-EEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEE
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG----F-SVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVY 298 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~----v-~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~ 298 (558)
.+++.+.|.|++|+|||+++..+.+.......+ + .+|+-|-+ .+.-.+++.++.+.= ...+. + .
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~-~~~~~~~~~~i~~~l-~~~~~-----~----~ 106 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI-LDTLYQVLVELANQL-RGSGE-----E----V 106 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC-CCCHHHHHHHHHHHH-hhcCC-----C----C
Confidence 344679999999999999998888765332221 3 34444433 233345666655420 00000 0 0
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHH
Q 008638 299 GQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (558)
Q Consensus 299 ~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a 341 (558)
.....+....+. .+-+++.. .++.++|++|++-.+.
T Consensus 107 ~~~~~~~~~~~~------~l~~~l~~-~~~~~vlvIDE~d~L~ 142 (365)
T TIGR02928 107 PTTGLSTSEVFR------RLYKELNE-RGDSLIIVLDEIDYLV 142 (365)
T ss_pred CCCCCCHHHHHH------HHHHHHHh-cCCeEEEEECchhhhc
Confidence 001111111111 22334444 5889999999998775
No 113
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.37 E-value=0.032 Score=57.08 Aligned_cols=127 Identities=22% Similarity=0.240 Sum_probs=69.8
Q ss_pred ccceeeeeeeEeeccc--ccccCceeeeecCCCCChhHHHHHHHHHHHhh-----cCCEEEEEEecCCchhHHHHHHHHH
Q 008638 206 EQQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGFSVFAGVGERTREGNDLYREMI 278 (558)
Q Consensus 206 ~~e~l~TGIkvID~l~--PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~-----~~~v~V~~~iGER~rEv~d~~~e~~ 278 (558)
....+.||++.+|-++ -|-.|+=.=|+|++|+|||.|+++++.+..-. .++-+||+=. |..-....+.+ +.
T Consensus 16 ~~~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidT-e~~f~~~Rl~~-i~ 93 (256)
T PF08423_consen 16 RWSRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDT-EGTFSPERLQQ-IA 93 (256)
T ss_dssp TS-EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEES-SSSS-HHHHHH-HH
T ss_pred cCCeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeC-CCCCCHHHHHH-Hh
Confidence 4567999999999997 37788888999999999999999998765311 1245666533 22222222222 22
Q ss_pred HhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHHH
Q 008638 279 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQAN 344 (558)
Q Consensus 279 e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A~ 344 (558)
+.- ++..+..+++.. ++--.+ ........ . .+...+.+ .+-=||++||++-+-+..
T Consensus 94 ~~~--~~~~~~~l~~I~-v~~~~~--~~~l~~~L-~--~l~~~l~~--~~ikLIVIDSIaalfr~e 149 (256)
T PF08423_consen 94 ERF--GLDPEEILDNIF-VIRVFD--LEELLELL-E--QLPKLLSE--SKIKLIVIDSIAALFRSE 149 (256)
T ss_dssp HHT--TS-HHHHHHTEE-EEE-SS--HHHHHHHH-H--HHHHHHHH--SCEEEEEEETSSHHHHHH
T ss_pred hcc--ccccchhhhcee-eeecCC--HHHHHHHH-H--HHHhhccc--cceEEEEecchHHHHHHH
Confidence 210 111111233433 333322 12222221 1 23444544 566799999999876653
No 114
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.28 E-value=0.1 Score=55.71 Aligned_cols=98 Identities=13% Similarity=0.176 Sum_probs=54.6
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHHHhhcCCE-EEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCC
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGF-SVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMN 302 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v-~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ 302 (558)
.+++.+.|.|++|+|||+++..+.+........+ .+|+-|-+.. ...+++.++.+. +...... ...
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~-~~~~~~~~i~~~----l~~~~~~--------~~~ 119 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR-TRYAIFSEIARQ----LFGHPPP--------SSG 119 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC-CHHHHHHHHHHH----hcCCCCC--------CCC
Confidence 3456799999999999999998887654432233 4566555433 234555555432 1000000 000
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHH
Q 008638 303 EPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (558)
Q Consensus 303 ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a 341 (558)
.+... .--.+.+++.. .++.++|++|++-.+.
T Consensus 120 ~~~~~------~~~~~~~~l~~-~~~~~viviDE~d~l~ 151 (394)
T PRK00411 120 LSFDE------LFDKIAEYLDE-RDRVLIVALDDINYLF 151 (394)
T ss_pred CCHHH------HHHHHHHHHHh-cCCEEEEEECCHhHhh
Confidence 11110 01123345554 6888999999998665
No 115
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.27 E-value=0.062 Score=54.76 Aligned_cols=38 Identities=26% Similarity=0.376 Sum_probs=28.4
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCc
Q 008638 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~ 267 (558)
|+.|+|++|+|||+|+..++.+..+.. -+||....+..
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f--~~I~l~t~~~n 52 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKF--DHIFLITPEYN 52 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccC--CEEEEEecCCc
Confidence 889999999999999999998754433 24555555433
No 116
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.22 E-value=0.1 Score=56.42 Aligned_cols=46 Identities=33% Similarity=0.494 Sum_probs=33.9
Q ss_pred eeeeeeeEeecc-cccccCceeeeecCCCCChhHHHHHHHHHHHhhc
Q 008638 209 ILVTGIKVVDLL-APYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 254 (558)
Q Consensus 209 ~l~TGIkvID~l-~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~ 254 (558)
.+..-+.+++.. .-+.+|+-++++|++|+||||++..++......+
T Consensus 119 ~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~ 165 (374)
T PRK14722 119 VLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRF 165 (374)
T ss_pred HHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 344445555544 3467899999999999999999998887654433
No 117
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.15 E-value=0.061 Score=57.78 Aligned_cols=77 Identities=25% Similarity=0.414 Sum_probs=46.0
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHH
Q 008638 229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGAR 308 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r 308 (558)
+-+.|++|||||+|+.-++ +.+|.+. .-|+-+-.-...++|+..-|.++.
T Consensus 165 mIlWGppG~GKTtlArlia-~tsk~~S--yrfvelSAt~a~t~dvR~ife~aq--------------------------- 214 (554)
T KOG2028|consen 165 MILWGPPGTGKTTLARLIA-STSKKHS--YRFVELSATNAKTNDVRDIFEQAQ--------------------------- 214 (554)
T ss_pred eEEecCCCCchHHHHHHHH-hhcCCCc--eEEEEEeccccchHHHHHHHHHHH---------------------------
Confidence 4578999999999996554 4455443 122322222333344333332221
Q ss_pred HHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHHHHHH
Q 008638 309 ARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEV 347 (558)
Q Consensus 309 ~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A~rEi 347 (558)
.+.- .-++.-+||||.+.||-.++..+
T Consensus 215 -----------~~~~-l~krkTilFiDEiHRFNksQQD~ 241 (554)
T KOG2028|consen 215 -----------NEKS-LTKRKTILFIDEIHRFNKSQQDT 241 (554)
T ss_pred -----------HHHh-hhcceeEEEeHHhhhhhhhhhhc
Confidence 0111 24778999999999999988754
No 118
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=95.09 E-value=0.027 Score=61.34 Aligned_cols=62 Identities=24% Similarity=0.255 Sum_probs=47.6
Q ss_pred ceeeeeeeEeeccc-ccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEE-EEEecCCchhH
Q 008638 208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSV-FAGVGERTREG 270 (558)
Q Consensus 208 e~l~TGIkvID~l~-PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V-~~~iGER~rEv 270 (558)
..+.||++.+|-++ -+.+|+=+.|-|.+|+|||+++.+++.+.+..++ .+| |+-.-+...++
T Consensus 176 ~gi~tG~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g-~~vl~~SlEm~~~~i 239 (434)
T TIGR00665 176 TGVPTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKEG-KPVAFFSLEMSAEQL 239 (434)
T ss_pred CcccCCchhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCC-CeEEEEeCcCCHHHH
Confidence 44899999999986 4889999999999999999999999998876443 444 44444444333
No 119
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.08 E-value=0.034 Score=55.11 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=39.0
Q ss_pred cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHH
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGN 271 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~ 271 (558)
+.+|+-+.|-|++|+|||+++.+++.+.++.++.-++|+-.-+..+|+.
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~ 58 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLL 58 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHH
Confidence 6799999999999999999999999988876544456666666655553
No 120
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.95 E-value=0.025 Score=57.26 Aligned_cols=58 Identities=26% Similarity=0.317 Sum_probs=44.3
Q ss_pred eeeeeeEeeccc-ccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCch
Q 008638 210 LVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTR 268 (558)
Q Consensus 210 l~TGIkvID~l~-PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~r 268 (558)
+.||++.+|-++ -+.+|+=..|-|.+|+|||+++.+++.+.+..+ +.+|....-|=+.
T Consensus 2 i~TG~~~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~-~~~vly~SlEm~~ 60 (259)
T PF03796_consen 2 IPTGFPALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNG-GYPVLYFSLEMSE 60 (259)
T ss_dssp B-SSTHHHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTT-SSEEEEEESSS-H
T ss_pred CCCChHHHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhc-CCeEEEEcCCCCH
Confidence 579999999886 678888899999999999999999999988754 3666666665443
No 121
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.89 E-value=0.018 Score=58.60 Aligned_cols=27 Identities=33% Similarity=0.592 Sum_probs=24.2
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.|.+|++.||+|.+|+|||||+.-++
T Consensus 28 ~~i~~Ge~lgivGeSGsGKSTL~r~l~ 54 (252)
T COG1124 28 LEIERGETLGIVGESGSGKSTLARLLA 54 (252)
T ss_pred EEecCCCEEEEEcCCCCCHHHHHHHHh
Confidence 579999999999999999999996544
No 122
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.89 E-value=0.078 Score=57.66 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=19.5
Q ss_pred CceeeeecCCCCChhHHHHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
...+.|.|++|||||+|+..+.+.
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999766543
No 123
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.77 E-value=0.11 Score=54.21 Aligned_cols=115 Identities=23% Similarity=0.307 Sum_probs=71.0
Q ss_pred cceeeeeeeEeecccc--cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccc
Q 008638 207 QQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIK 284 (558)
Q Consensus 207 ~e~l~TGIkvID~l~P--igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~ 284 (558)
.+.+.||.+.+|-++- +-+|.-.=|||++|+|||+|+++++.|..+ .++.++|+ -=|.+-....+..-..+.
T Consensus 39 ~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~-~g~~a~fI-DtE~~l~p~r~~~l~~~~---- 112 (279)
T COG0468 39 IEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQK-PGGKAAFI-DTEHALDPERAKQLGVDL---- 112 (279)
T ss_pred cccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhc-CCCeEEEE-eCCCCCCHHHHHHHHHhh----
Confidence 5678999999999887 336777889999999999999999887544 34556653 223333333322222110
Q ss_pred cCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCC--cEEeecccchhHHHHH
Q 008638 285 LGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQ--DVLLFIDNIFRFTQAN 344 (558)
Q Consensus 285 ~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~--dVLl~~DsltR~a~A~ 344 (558)
..-+++++.+.. .-++.+++++-. .+. ==|+++||++-+-++.
T Consensus 113 --------~d~l~v~~~~~~--------e~q~~i~~~~~~-~~~~~i~LvVVDSvaa~~r~~ 157 (279)
T COG0468 113 --------LDNLLVSQPDTG--------EQQLEIAEKLAR-SGAEKIDLLVVDSVAALVRAE 157 (279)
T ss_pred --------hcceeEecCCCH--------HHHHHHHHHHHH-hccCCCCEEEEecCcccchhh
Confidence 112344444433 234445555554 244 5689999998665554
No 124
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.50 E-value=0.24 Score=49.55 Aligned_cols=44 Identities=27% Similarity=0.229 Sum_probs=31.8
Q ss_pred CceeeeecCCCCChhHHHHHHHHHHHhh----------cCCEEEEEEecCCchh
Q 008638 226 GGKIGLFGGAGVGKTVLIMELINNVAKA----------HGGFSVFAGVGERTRE 269 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~n~a~~----------~~~v~V~~~iGER~rE 269 (558)
|.-..|+|++|+|||+|+.+++.+++.. ...-.|+...+|-+.+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~ 54 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPRE 54 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHH
Confidence 4456899999999999999999887631 1234566666776553
No 125
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.44 E-value=0.37 Score=51.00 Aligned_cols=29 Identities=31% Similarity=0.303 Sum_probs=25.4
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHHHh
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~a~ 252 (558)
.+|+.++++|++|+||||++..++...+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 57889999999999999999988877654
No 126
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.41 E-value=0.043 Score=48.28 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=19.2
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
+++|.|++|+||||++..+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999877654
No 127
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.41 E-value=0.031 Score=53.80 Aligned_cols=27 Identities=41% Similarity=0.613 Sum_probs=22.4
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+.++.+.|.|++|+|||+|+.++++..
T Consensus 18 ~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 18 GPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp --SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred hcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 346889999999999999999888764
No 128
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.39 E-value=0.041 Score=51.51 Aligned_cols=34 Identities=44% Similarity=0.617 Sum_probs=21.1
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhH
Q 008638 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG 270 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv 270 (558)
||.|.|++++|||||+..+... ++.+ +.|-.|++
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~------g~~~---v~E~ar~~ 34 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR------GYPV---VPEYAREI 34 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH------T-EE---E--TTHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc------CCeE---EeecHHHH
Confidence 7899999999999999877543 4443 37766665
No 129
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.39 E-value=0.49 Score=46.53 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=30.7
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGND 272 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d 272 (558)
-+.++|+.|+||||.+..++.........+.++.+=.-|.--+..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQ 47 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQ 47 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHH
Confidence 468999999999999999998776553345555554455544433
No 130
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.38 E-value=0.73 Score=43.42 Aligned_cols=43 Identities=26% Similarity=0.254 Sum_probs=29.6
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHH
Q 008638 229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGND 272 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d 272 (558)
+++.|++|+|||+++..++...++. +.-.+++-++-+..+..+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~-g~~v~~i~~D~~~~~~~~ 45 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKK-GKKVLLVAADTYRPAAIE 45 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEEcCCCChHHHH
Confidence 6789999999999999888776543 223445556655444444
No 131
>PRK05748 replicative DNA helicase; Provisional
Probab=94.27 E-value=0.049 Score=59.82 Aligned_cols=58 Identities=24% Similarity=0.181 Sum_probs=45.5
Q ss_pred ceeeeeeeEeeccc-ccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCC
Q 008638 208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266 (558)
Q Consensus 208 e~l~TGIkvID~l~-PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER 266 (558)
.-+.||+..+|-++ -+.+|+=+.|-|.+|+|||+++.+++.+.+..++ .+|+...-|=
T Consensus 184 ~gi~TG~~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g-~~v~~fSlEm 242 (448)
T PRK05748 184 TGIPTGFTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTD-KNVAIFSLEM 242 (448)
T ss_pred CCccCChHHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCC-CeEEEEeCCC
Confidence 45899999999987 4788999999999999999999999998775443 3443334443
No 132
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=0.16 Score=55.47 Aligned_cols=55 Identities=29% Similarity=0.517 Sum_probs=41.6
Q ss_pred eeeeeeEeecccc--cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCc
Q 008638 210 LVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267 (558)
Q Consensus 210 l~TGIkvID~l~P--igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~ 267 (558)
+.||+.-+|=.+= +.+|+=++|=|+||.|||||+.+++.+.++. .-++|+ .||-.
T Consensus 75 i~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~--~~vLYV-sGEES 131 (456)
T COG1066 75 ISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR--GKVLYV-SGEES 131 (456)
T ss_pred ccCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhc--CcEEEE-eCCcC
Confidence 5666666665543 5899999999999999999999999998865 334444 67643
No 133
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.13 E-value=0.16 Score=48.58 Aligned_cols=87 Identities=25% Similarity=0.264 Sum_probs=56.5
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCC
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEP 304 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep 304 (558)
||--+-|.|-+|+|||||+..+...... .++.+|.+-|..-|.. | ..+ -.-+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~--~g~~~~~LDgD~lR~~------l-~~d-------------------l~fs 52 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFA--RGIKVYLLDGDNLRHG------L-NAD-------------------LGFS 52 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHH--TTS-EEEEEHHHHCTT------T-TTT---------------------SS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEecCcchhhc------c-CCC-------------------CCCC
Confidence 5667889999999999999988776543 3688988888632222 1 000 0123
Q ss_pred HHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhH
Q 008638 305 PGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRF 340 (558)
Q Consensus 305 ~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~ 340 (558)
...|..-+.-.-.+|.-|.+ +|..|++-.-+.++-
T Consensus 53 ~~dR~e~~rr~~~~A~ll~~-~G~ivIva~isp~~~ 87 (156)
T PF01583_consen 53 KEDREENIRRIAEVAKLLAD-QGIIVIVAFISPYRE 87 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTSEEEEE----SHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCCeEEEeeccCchH
Confidence 45677777777888999998 799888877777644
No 134
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.09 E-value=0.048 Score=52.83 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=27.8
Q ss_pred eEeecccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 215 KVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 215 kvID~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
++++-.+.+.+|..++|+|+.|+|||||+. ++...
T Consensus 14 ~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~-~l~Gl 48 (177)
T cd03222 14 FLLVELGVVKEGEVIGIVGPNGTGKTTAVK-ILAGQ 48 (177)
T ss_pred EEEccCcEECCCCEEEEECCCCChHHHHHH-HHHcC
Confidence 344445689999999999999999999996 44443
No 135
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.07 E-value=0.04 Score=49.42 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=23.4
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+-+..|+.++|+|++|+|||||+..+.
T Consensus 10 l~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 10 VDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 457789999999999999999997654
No 136
>PRK09165 replicative DNA helicase; Provisional
Probab=93.86 E-value=0.06 Score=60.19 Aligned_cols=46 Identities=30% Similarity=0.315 Sum_probs=40.9
Q ss_pred ceeeeeeeEeeccc-ccccCceeeeecCCCCChhHHHHHHHHHHHhh
Q 008638 208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (558)
Q Consensus 208 e~l~TGIkvID~l~-PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~ 253 (558)
.-+.||+.-+|-++ -+.+|+=+.|-|.+|+|||+++..++.|.++.
T Consensus 198 ~gi~TG~~~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~ 244 (497)
T PRK09165 198 SGISTGLRDLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKA 244 (497)
T ss_pred CcccCChHHHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHh
Confidence 34889999999987 68889999999999999999999999988764
No 137
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.86 E-value=0.066 Score=53.90 Aligned_cols=39 Identities=21% Similarity=0.429 Sum_probs=28.8
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEE
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVF 260 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~ 260 (558)
+.+.+|+.+.|+||+|+|||||+. .+|..-.-..+-..+
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTlLR-clN~LE~~~~G~I~i 61 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTLLR-CLNGLEEPDSGSITV 61 (240)
T ss_pred eeEcCCCEEEEECCCCCCHHHHHH-HHHCCcCCCCceEEE
Confidence 578999999999999999999995 555543333343334
No 138
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.85 E-value=0.16 Score=49.31 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.8
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|+.|+|++|+||||++..+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999888665
No 139
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.82 E-value=0.17 Score=48.67 Aligned_cols=88 Identities=18% Similarity=0.189 Sum_probs=50.9
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCC-chhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHH
Q 008638 229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER-TREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGA 307 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER-~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~ 307 (558)
++|.||+|+|||+++.+++.+ ++.-++|+...+. ..|+.+-++..++.- ...
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~----~~~~~~y~at~~~~d~em~~rI~~H~~~R--------~~~--------------- 54 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE----LGGPVTYIATAEAFDDEMAERIARHRKRR--------PAH--------------- 54 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh----cCCCeEEEEccCcCCHHHHHHHHHHHHhC--------CCC---------------
Confidence 579999999999999888654 2334667666654 334433333322210 001
Q ss_pred HHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHHHH
Q 008638 308 RARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANS 345 (558)
Q Consensus 308 r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A~r 345 (558)
+.......-+.+.+.+..+.+ ++++|++|-|.....
T Consensus 55 -w~t~E~~~~l~~~l~~~~~~~-~VLIDclt~~~~n~l 90 (169)
T cd00544 55 -WRTIETPRDLVSALKELDPGD-VVLIDCLTLWVTNLL 90 (169)
T ss_pred -ceEeecHHHHHHHHHhcCCCC-EEEEEcHhHHHHHhC
Confidence 111112244555565422444 799999999987765
No 140
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.80 E-value=0.048 Score=52.01 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=23.9
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~ 47 (178)
T cd03229 21 LNIEAGEIVALLGPSGSGKSTLLRCIA 47 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 667899999999999999999996544
No 141
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.78 E-value=0.079 Score=57.61 Aligned_cols=58 Identities=29% Similarity=0.282 Sum_probs=46.6
Q ss_pred ceeeeeeeEeeccc-ccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCC
Q 008638 208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266 (558)
Q Consensus 208 e~l~TGIkvID~l~-PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER 266 (558)
.-+.||++.+|-++ -+.+|+=+.|-|.+|+|||+++..++.|.+..+ +..|.....|=
T Consensus 175 ~gi~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~-g~~v~~fSlEm 233 (421)
T TIGR03600 175 TGLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALRE-GKPVLFFSLEM 233 (421)
T ss_pred cceeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC
Confidence 44899999999987 588999999999999999999999998887433 44554445553
No 142
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.76 E-value=0.049 Score=52.31 Aligned_cols=26 Identities=35% Similarity=0.698 Sum_probs=23.3
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+.+|+.++|+|++|+|||||+.-|
T Consensus 13 l~i~~Ge~~~i~G~nGsGKSTLl~~i 38 (190)
T TIGR01166 13 FAAERGEVLALLGANGAGKSTLLLHL 38 (190)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 56889999999999999999999644
No 143
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.70 E-value=0.14 Score=48.80 Aligned_cols=65 Identities=26% Similarity=0.230 Sum_probs=37.1
Q ss_pred eeeeeeEeecccc--cccCceeeeecCCCCChhHHHHHHHHHHHhhc--------CCEEEEEEecCCch-hHHHHH
Q 008638 210 LVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAH--------GGFSVFAGVGERTR-EGNDLY 274 (558)
Q Consensus 210 l~TGIkvID~l~P--igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~--------~~v~V~~~iGER~r-Ev~d~~ 274 (558)
+.|+++..|.+++ +.+|+-..|.|++|+|||+++.+++...++.. ....|...-.|-+. ++.+-+
T Consensus 14 ~~~~~~~~~~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl 89 (193)
T PF13481_consen 14 LDTGFPPLDWLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRL 89 (193)
T ss_dssp HHS------EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHH
T ss_pred ccCCCCCcceeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHH
Confidence 3444444444443 33899999999999999999999999887521 23456555566553 444333
No 144
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.70 E-value=0.051 Score=53.15 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=23.6
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-|.
T Consensus 25 ~~i~~G~~~~l~G~nGsGKSTLl~~i~ 51 (218)
T cd03255 25 LSIEKGEFVAIVGPSGSGKSTLLNILG 51 (218)
T ss_pred EEEcCCCEEEEEcCCCCCHHHHHHHHh
Confidence 567899999999999999999996443
No 145
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.65 E-value=0.051 Score=53.57 Aligned_cols=27 Identities=33% Similarity=0.550 Sum_probs=24.0
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|+.|+|||||+.-|.
T Consensus 24 l~i~~G~~~~i~G~nGsGKSTLl~~l~ 50 (229)
T cd03254 24 FSIKPGETVAIVGPTGAGKTTLINLLM 50 (229)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 578899999999999999999996554
No 146
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.63 E-value=0.055 Score=53.39 Aligned_cols=29 Identities=28% Similarity=0.501 Sum_probs=24.7
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+.+.+|+.++|+|++|+|||||+.- |...
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~-i~G~ 49 (227)
T cd03260 21 LDIPKGEITALIGPSGCGKSTLLRL-LNRL 49 (227)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHH-HHhh
Confidence 5688999999999999999999964 4444
No 147
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.62 E-value=0.055 Score=52.72 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=24.0
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 21 sl~i~~G~~~~i~G~nGsGKSTLl~~l~ 48 (214)
T cd03292 21 NISISAGEFVFLVGPSGAGKSTLLKLIY 48 (214)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3668899999999999999999996443
No 148
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.60 E-value=0.054 Score=48.70 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=23.0
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+.+|+.++|+|+.|+|||||+.-+
T Consensus 6 ~~i~~g~~~~i~G~nGsGKStLl~~l 31 (137)
T PF00005_consen 6 LEIKPGEIVAIVGPNGSGKSTLLKAL 31 (137)
T ss_dssp EEEETTSEEEEEESTTSSHHHHHHHH
T ss_pred EEEcCCCEEEEEccCCCccccceeee
Confidence 45789999999999999999999643
No 149
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.59 E-value=0.054 Score=52.76 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=23.9
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.++|+|++|+|||||+.-|.
T Consensus 21 s~~i~~G~~~~l~G~nGsGKSTLl~~l~ 48 (211)
T cd03225 21 SLTIKKGEFVLIVGPNGSGKSTLLRLLN 48 (211)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3568899999999999999999996443
No 150
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.58 E-value=0.053 Score=55.32 Aligned_cols=32 Identities=25% Similarity=0.544 Sum_probs=26.3
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
.=+.+.+|+-+.|+|++|||||||+. +|....
T Consensus 22 i~L~v~~GEfvsilGpSGcGKSTLLr-iiAGL~ 53 (248)
T COG1116 22 INLSVEKGEFVAILGPSGCGKSTLLR-LIAGLE 53 (248)
T ss_pred ceeEECCCCEEEEECCCCCCHHHHHH-HHhCCC
Confidence 34679999999999999999999995 555443
No 151
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.50 E-value=0.059 Score=52.48 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=24.1
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~ 47 (210)
T cd03269 20 SFSVEKGEIFGLLGPNGAGKTTTIRMIL 47 (210)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3568899999999999999999996443
No 152
>PRK14974 cell division protein FtsY; Provisional
Probab=93.49 E-value=0.76 Score=49.09 Aligned_cols=29 Identities=31% Similarity=0.323 Sum_probs=24.0
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHHHh
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~a~ 252 (558)
+++..++++|++|+||||++..++....+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~ 166 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKK 166 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999888876543
No 153
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.48 E-value=0.056 Score=52.96 Aligned_cols=26 Identities=31% Similarity=0.561 Sum_probs=23.4
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+.+|+.++|+|++|+|||||+.-+
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l 46 (222)
T cd03224 21 LTVPEGEIVALLGRNGAGKTTLLKTI 46 (222)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHH
Confidence 57889999999999999999999644
No 154
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=93.46 E-value=0.06 Score=52.82 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=24.1
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.++|+|+.|+|||||+.-+.
T Consensus 25 sl~i~~G~~~~i~G~nGsGKSTLl~~i~ 52 (221)
T TIGR02211 25 SLSIGKGEIVAIVGSSGSGKSTLLHLLG 52 (221)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3668899999999999999999996443
No 155
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.46 E-value=0.09 Score=54.23 Aligned_cols=41 Identities=32% Similarity=0.524 Sum_probs=32.4
Q ss_pred eEee-cccccccCceeeeecCCCCChhHHHHHHHHHHHhhcCC
Q 008638 215 KVVD-LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 256 (558)
Q Consensus 215 kvID-~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~ 256 (558)
+++| .-+.|-.|.-..++|++|+||||++ .|||+..+-..+
T Consensus 15 ~av~~v~l~I~~gef~vliGpSGsGKTTtL-kMINrLiept~G 56 (309)
T COG1125 15 KAVDDVNLTIEEGEFLVLIGPSGSGKTTTL-KMINRLIEPTSG 56 (309)
T ss_pred eeeeeeeEEecCCeEEEEECCCCCcHHHHH-HHHhcccCCCCc
Confidence 4444 4578999999999999999999999 588887654334
No 156
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.45 E-value=0.058 Score=53.69 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=23.3
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+.+|+.++|+|++|+|||||+.-|
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l 48 (243)
T TIGR02315 23 LNINPGEFVAIIGPSGAGKSTLLRCI 48 (243)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 56889999999999999999999644
No 157
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.42 E-value=0.06 Score=52.14 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=23.7
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 45 (206)
T TIGR03608 18 NLTIEKGKMYAIIGESGSGKSTLLNIIG 45 (206)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence 3467799999999999999999996443
No 158
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.41 E-value=0.063 Score=52.09 Aligned_cols=30 Identities=37% Similarity=0.533 Sum_probs=25.1
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
=+.+.+|+.++|.|++|+|||||+. +|...
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~-~i~G~ 50 (200)
T PRK13540 21 SFHLPAGGLLHLKGSNGAGKTTLLK-LIAGL 50 (200)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHH-HHhcC
Confidence 3567899999999999999999996 55443
No 159
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.38 E-value=0.062 Score=52.57 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=24.0
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 50 (216)
T TIGR00960 23 NFHITKGEMVFLVGHSGAGKSTFLKLIL 50 (216)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3568899999999999999999996443
No 160
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.38 E-value=0.061 Score=52.04 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=24.1
Q ss_pred ccccccCceeeeecCCCCChhHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
=+.+.+|.+++|.|++|+|||||+.-+
T Consensus 15 sl~i~~G~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 15 DVSIPLNVLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 367999999999999999999999744
No 161
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.32 E-value=0.063 Score=53.27 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=23.9
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-|.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (241)
T cd03256 22 LSINPGEFVALIGPSGAGKSTLLRCLN 48 (241)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 578899999999999999999996443
No 162
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.29 E-value=0.063 Score=53.08 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=25.9
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
|.=+.+.+|+.++|+|++|+|||||+. ++...
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~-~l~G~ 49 (230)
T TIGR03410 18 GVSLEVPKGEVTCVLGRNGVGKTTLLK-TLMGL 49 (230)
T ss_pred ceeeEECCCCEEEEECCCCCCHHHHHH-HHhCC
Confidence 334668899999999999999999996 44433
No 163
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.29 E-value=0.065 Score=53.41 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=24.3
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (239)
T cd03296 22 SLDIPSGELVALLGPSGSGKTTLLRLIA 49 (239)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3678899999999999999999996443
No 164
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.29 E-value=0.065 Score=52.64 Aligned_cols=29 Identities=38% Similarity=0.529 Sum_probs=24.7
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
|.=+.+.+|+.++|+|+.|+|||||+.-|
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i 46 (220)
T cd03265 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKML 46 (220)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 34467889999999999999999999644
No 165
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.29 E-value=0.064 Score=53.10 Aligned_cols=27 Identities=30% Similarity=0.540 Sum_probs=24.0
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|+.|+|||||+.-|.
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 52 (233)
T cd03258 26 LSVPKGEIFGIIGRSGAGKSTLIRCIN 52 (233)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 668899999999999999999997444
No 166
>PRK08181 transposase; Validated
Probab=93.28 E-value=0.19 Score=51.90 Aligned_cols=46 Identities=28% Similarity=0.491 Sum_probs=32.3
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEE-EEEecCCchhHHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSV-FAGVGERTREGNDLYREMI 278 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V-~~~iGER~rEv~d~~~e~~ 278 (558)
.+|+.+.|.|++|+|||.|+.-+.+...+. ++.| |.- +.+++.++.
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~-------~~~L~~~l~ 150 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTR-------TTDLVQKLQ 150 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeee-------HHHHHHHHH
Confidence 478889999999999999998777654432 4444 331 355666654
No 167
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.25 E-value=0.074 Score=51.83 Aligned_cols=30 Identities=20% Similarity=0.439 Sum_probs=26.3
Q ss_pred eecccccccCceeeeecCCCCChhHHHHHH
Q 008638 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 217 ID~l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+|.=+.+.+|+.++|+|+.|+|||||+.-+
T Consensus 15 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l 44 (211)
T cd03298 15 MHFDLTFAQGEITAIVGPSGSGKSTLLNLI 44 (211)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 366688999999999999999999999644
No 168
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.22 E-value=0.059 Score=52.35 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=24.3
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 25 s~~i~~G~~~~i~G~nG~GKSTLl~~i~ 52 (204)
T cd03250 25 NLEVPKGELVAIVGPVGSGKSSLLSALL 52 (204)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3678899999999999999999996444
No 169
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.21 E-value=0.066 Score=52.60 Aligned_cols=28 Identities=29% Similarity=0.593 Sum_probs=23.8
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+-+|+.++|+|++|+|||||+.-+.
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (228)
T cd03257 25 SFSIKKGETLGLVGESGSGKSTLARAIL 52 (228)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3567799999999999999999996443
No 170
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=93.20 E-value=0.076 Score=52.73 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=24.2
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.++|+|+.|+|||||+.-|.
T Consensus 23 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 50 (238)
T cd03249 23 SLTIPPGKTVALVGSSGCGKSTVVSLLE 50 (238)
T ss_pred EEEecCCCEEEEEeCCCCCHHHHHHHHh
Confidence 4568899999999999999999996443
No 171
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.19 E-value=0.51 Score=47.38 Aligned_cols=24 Identities=42% Similarity=0.594 Sum_probs=20.1
Q ss_pred CceeeeecCCCCChhHHHHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
.+-+.|.|++|+|||+|++.+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHh
Confidence 346889999999999999877654
No 172
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.18 E-value=0.07 Score=52.99 Aligned_cols=28 Identities=25% Similarity=0.491 Sum_probs=24.4
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (235)
T cd03261 20 DLDVRRGEILAIIGPSGSGKSTLLRLIV 47 (235)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3578899999999999999999996443
No 173
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.16 E-value=0.07 Score=52.15 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=23.6
Q ss_pred ccccccCceeeeecCCCCChhHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
=+.|.+|+.++|+|++|+|||||+.-+
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l 48 (207)
T PRK13539 22 SFTLAAGEALVLTGPNGSGKTTLLRLI 48 (207)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 357889999999999999999999644
No 174
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.15 E-value=0.072 Score=51.78 Aligned_cols=26 Identities=38% Similarity=0.425 Sum_probs=23.1
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+.+|+.++|+|++|+|||||+.-+
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l 46 (205)
T cd03226 21 LDLYAGEIIALTGKNGAGKTTLAKIL 46 (205)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 46789999999999999999999644
No 175
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.14 E-value=0.091 Score=56.35 Aligned_cols=42 Identities=26% Similarity=0.445 Sum_probs=32.1
Q ss_pred ccceeeeeeeEee-cccccccCceeeeecCCCCChhHHHHHHHHH
Q 008638 206 EQQILVTGIKVVD-LLAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 206 ~~e~l~TGIkvID-~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
+...+- +..++| +=+.|.+|.-+.|.||+|||||||+. ||..
T Consensus 11 v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR-~IAG 53 (352)
T COG3842 11 VSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLR-MIAG 53 (352)
T ss_pred eeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHH-HHhC
Confidence 334344 456665 66789999999999999999999996 4443
No 176
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=93.13 E-value=0.072 Score=53.14 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=23.3
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+.+|+.++|+|++|+|||||+.-+
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l 48 (242)
T PRK11124 23 LDCPQGETLVLLGPSGAGKSSLLRVL 48 (242)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 67889999999999999999999644
No 177
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.12 E-value=0.072 Score=51.85 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=23.6
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 21 ~~i~~G~~~~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03262 21 LTVKKGEVVVIIGPSGSGKSTLLRCIN 47 (213)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 568899999999999999999996443
No 178
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.11 E-value=0.072 Score=52.01 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=23.7
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (213)
T cd03259 21 LTVEPGEFLALLGPSGCGKTTLLRLIA 47 (213)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 568899999999999999999996443
No 179
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.10 E-value=0.071 Score=52.68 Aligned_cols=27 Identities=30% Similarity=0.588 Sum_probs=23.9
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|+.|+|||||+.-|.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (232)
T cd03218 21 LSVKQGEIVGLLGPNGAGKTTTFYMIV 47 (232)
T ss_pred eEecCCcEEEEECCCCCCHHHHHHHHh
Confidence 678899999999999999999996443
No 180
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=93.08 E-value=0.074 Score=52.91 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.7
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (236)
T TIGR03864 22 FTVRPGEFVALLGPNGAGKSTLFSLLT 48 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 568899999999999999999996443
No 181
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.07 E-value=0.072 Score=53.41 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=24.0
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14247 23 NLEIPDNTITALMGPSGSGKSTLLRVFN 50 (250)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3567899999999999999999996443
No 182
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.06 E-value=0.66 Score=44.30 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=23.2
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.+|-.+.|.|.+|+||||++..+....
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 567789999999999999998877654
No 183
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.05 E-value=0.082 Score=50.51 Aligned_cols=36 Identities=25% Similarity=0.522 Sum_probs=26.8
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHHHHHHhhcCC
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 256 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~ 256 (558)
=+.+.+|+.++|.|++|+|||||+. ++......+.+
T Consensus 19 ~~~i~~G~~~~l~G~nGsGKStLl~-~i~G~~~~~~G 54 (180)
T cd03214 19 SLSIEAGEIVGILGPNGAGKSTLLK-TLAGLLKPSSG 54 (180)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHH-HHhCCCCCCCc
Confidence 3557899999999999999999996 44444333334
No 184
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.05 E-value=0.074 Score=52.05 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=23.5
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (218)
T cd03266 26 FTVKPGEVTGLLGPNGAGKTTTLRMLA 52 (218)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 567899999999999999999996443
No 185
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.05 E-value=0.081 Score=46.10 Aligned_cols=22 Identities=50% Similarity=0.715 Sum_probs=19.4
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|+.|+|++|+|||+|+..++..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999877643
No 186
>PRK08118 topology modulation protein; Reviewed
Probab=93.04 E-value=0.078 Score=50.60 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=20.5
Q ss_pred ceeeeecCCCCChhHHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n 249 (558)
+|+.|+|++|+|||||+..+...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999887654
No 187
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.00 E-value=0.076 Score=51.67 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=25.6
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
|.=+.+-+|++++|+|++|+|||||+. ++...
T Consensus 18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~-~l~G~ 49 (201)
T cd03231 18 GLSFTLAAGEALQVTGPNGSGKTTLLR-ILAGL 49 (201)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHH-HHhCC
Confidence 334668899999999999999999996 44433
No 188
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=92.99 E-value=0.077 Score=51.72 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.5
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03301 21 LDIADGEFVVLLGPSGCGKTTTLRMIA 47 (213)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 567899999999999999999996443
No 189
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.99 E-value=0.074 Score=53.39 Aligned_cols=30 Identities=27% Similarity=0.467 Sum_probs=25.0
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
=+.+.+|+.++|+|++|+|||||+. ++...
T Consensus 24 s~~i~~Ge~~~l~G~nGsGKSTLl~-~l~G~ 53 (253)
T PRK14267 24 DLKIPQNGVFALMGPSGCGKSTLLR-TFNRL 53 (253)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHH-HHhcc
Confidence 3678899999999999999999996 44433
No 190
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=92.98 E-value=0.077 Score=51.76 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=24.5
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+.+.+|+.++|+|++|+|||||+. +|...
T Consensus 23 ~~i~~G~~~~l~G~nGsGKSTLl~-~i~Gl 51 (214)
T TIGR02673 23 LHIRKGEFLFLTGPSGAGKTTLLK-LLYGA 51 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHH-HHhCC
Confidence 568899999999999999999996 44443
No 191
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=92.97 E-value=0.075 Score=52.76 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=24.1
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.++|+|++|+|||||+.-++
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (237)
T cd03252 22 SLRIKPGEVVGIVGRSGSGKSTLTKLIQ 49 (237)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3567899999999999999999996444
No 192
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=92.95 E-value=0.078 Score=51.96 Aligned_cols=27 Identities=30% Similarity=0.543 Sum_probs=23.7
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~i~ 51 (220)
T cd03245 25 LTIRAGEKVAIIGRVGSGKSTLLKLLA 51 (220)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 568899999999999999999996443
No 193
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=92.94 E-value=0.084 Score=50.29 Aligned_cols=28 Identities=36% Similarity=0.580 Sum_probs=23.9
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.++|.|+.|+|||||+.-+.
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~ 49 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTLLQLLT 49 (178)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3567799999999999999999996544
No 194
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.93 E-value=0.76 Score=47.49 Aligned_cols=31 Identities=35% Similarity=0.433 Sum_probs=25.9
Q ss_pred cccCceeeeecCCCCChhHHHHHHHHHHHhh
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~ 253 (558)
-.++..+.++|++|+||||++..++...++.
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~ 99 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQ 99 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 4567789999999999999999998776543
No 195
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=92.93 E-value=0.071 Score=52.79 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=23.8
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-|.
T Consensus 21 l~i~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (236)
T cd03219 21 FSVRPGEIHGLIGPNGAGKTTLFNLIS 47 (236)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHc
Confidence 568899999999999999999996443
No 196
>PHA02542 41 41 helicase; Provisional
Probab=92.92 E-value=0.096 Score=58.31 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=46.6
Q ss_pred ceeeeeeeEeeccc--ccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCch
Q 008638 208 QILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTR 268 (558)
Q Consensus 208 e~l~TGIkvID~l~--PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~r 268 (558)
.-+.||+.-+|-++ -+.+|+=+.|-|.||+|||+++..++.+.++. +.+|.....|=+.
T Consensus 170 ~gi~TG~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~--g~~Vl~fSLEM~~ 230 (473)
T PHA02542 170 NKIPFKLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQ--GYNVLYISMEMAE 230 (473)
T ss_pred CccCCCcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhc--CCcEEEEeccCCH
Confidence 45799999999998 48899999999999999999999999888753 4455444444333
No 197
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=92.90 E-value=0.073 Score=51.95 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=23.2
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+.+|+.++|+|++|+|||||+.-+
T Consensus 20 l~i~~Ge~~~l~G~nGsGKSTLl~~l 45 (213)
T cd03235 20 FEVKPGEFLAIVGPNGAGKSTLLKAI 45 (213)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 56889999999999999999999643
No 198
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.89 E-value=0.082 Score=52.30 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=23.8
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.++|+|+.|+|||||+.-|.
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (234)
T cd03251 22 SLDIPAGETVALVGPSGSGKSTLVNLIP 49 (234)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3467799999999999999999996443
No 199
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=92.88 E-value=0.079 Score=52.63 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=24.1
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (243)
T TIGR01978 20 NLTVKKGEIHAIMGPNGSGKSTLSKTIA 47 (243)
T ss_pred ceEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3568899999999999999999996443
No 200
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=92.87 E-value=0.08 Score=53.45 Aligned_cols=29 Identities=31% Similarity=0.485 Sum_probs=24.7
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
.=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 25 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 53 (258)
T PRK11701 25 VSFDLYPGEVLGIVGESGSGKTTLLNALS 53 (258)
T ss_pred eeEEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence 34578899999999999999999996443
No 201
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.87 E-value=0.079 Score=52.06 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=23.7
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~l~ 51 (220)
T cd03293 25 LSVEEGEFVALVGPSGCGKSTLLRIIA 51 (220)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence 568899999999999999999996443
No 202
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=92.86 E-value=0.082 Score=53.61 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=23.8
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (255)
T PRK11248 22 LTLESGELLVVLGPSGCGKTTLLNLIA 48 (255)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 578899999999999999999996443
No 203
>PRK07261 topology modulation protein; Provisional
Probab=92.86 E-value=0.084 Score=50.45 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.1
Q ss_pred ceeeeecCCCCChhHHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n 249 (558)
+|++|+|.+|+|||||+..+...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999887643
No 204
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.84 E-value=0.099 Score=50.54 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=24.5
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
|.=+.+.+|++++|.|++|+|||||+.-+
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l 46 (195)
T PRK13541 18 DLSITFLPSAITYIKGANGCGKSSLLRMI 46 (195)
T ss_pred EEEEEEcCCcEEEEECCCCCCHHHHHHHH
Confidence 44456889999999999999999999644
No 205
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=92.84 E-value=0.084 Score=52.61 Aligned_cols=29 Identities=28% Similarity=0.553 Sum_probs=24.7
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+.+.+|+.++|+|++|+|||||+. ++...
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLl~-~l~G~ 52 (241)
T PRK10895 24 LTVNSGEIVGLLGPNGAGKTTTFY-MVVGI 52 (241)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHH-HHhCC
Confidence 678899999999999999999996 44443
No 206
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.78 E-value=0.087 Score=54.40 Aligned_cols=26 Identities=35% Similarity=0.600 Sum_probs=22.6
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
..|+-+++.|++|+|||+++++.+.+
T Consensus 31 ~~~~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHHHHHHHC
T ss_pred HcCCcEEEECCCCCchhHHHHhhhcc
Confidence 45788999999999999999988754
No 207
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.78 E-value=0.086 Score=46.21 Aligned_cols=21 Identities=43% Similarity=0.627 Sum_probs=18.8
Q ss_pred eeeecCCCCChhHHHHHHHHH
Q 008638 229 IGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i~n 249 (558)
|+|.|.+|+|||||+..+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988765
No 208
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.75 E-value=0.087 Score=52.71 Aligned_cols=29 Identities=24% Similarity=0.461 Sum_probs=24.5
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 22 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 50 (241)
T PRK14250 22 ISVKFEGGAIYTIVGPSGAGKSTLIKLIN 50 (241)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34678899999999999999999996443
No 209
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=92.74 E-value=0.086 Score=52.77 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=23.7
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-++
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 50 (250)
T PRK11264 24 LEVKPGEVVAIIGPSGSGKTTLLRCIN 50 (250)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 568899999999999999999996443
No 210
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=92.73 E-value=0.085 Score=52.86 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=24.9
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
|.=+.+.+|+.++|+|++|+|||||+.-+
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i 49 (250)
T PRK14240 21 KINLDIEENQVTALIGPSGCGKSTFLRTL 49 (250)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 44467889999999999999999999644
No 211
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.73 E-value=0.088 Score=53.18 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.6
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 33 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 59 (259)
T PRK14274 33 LSIPENEVTAIIGPSGCGKSTFIKTLN 59 (259)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 567899999999999999999996443
No 212
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=92.70 E-value=0.089 Score=52.41 Aligned_cols=28 Identities=21% Similarity=0.340 Sum_probs=24.2
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 48 (240)
T PRK09493 21 DLNIDQGEVVVIIGPSGSGKSTLLRCIN 48 (240)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3668899999999999999999996443
No 213
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.69 E-value=0.091 Score=52.47 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.8
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (242)
T cd03295 22 LEIAKGEFLVLIGPSGSGKTTTMKMIN 48 (242)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 678899999999999999999996443
No 214
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.67 E-value=0.096 Score=49.44 Aligned_cols=27 Identities=33% Similarity=0.505 Sum_probs=23.7
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 47 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILS 47 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence 568899999999999999999996443
No 215
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.65 E-value=0.61 Score=54.81 Aligned_cols=124 Identities=19% Similarity=0.189 Sum_probs=62.9
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCch----hHHHHHHHHHHhcccccCc--------ccCC
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTR----EGNDLYREMIESGVIKLGD--------KQAD 291 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~r----Ev~d~~~e~~e~~~~~~~~--------~~~~ 291 (558)
.+|+.++++|+.|+||||++..+.......++...|.+......| |-...|.++..-.+....+ +...
T Consensus 183 ~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~ 262 (767)
T PRK14723 183 AQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG 262 (767)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc
Confidence 468899999999999999998888665444433233322222223 3333333332111100000 0012
Q ss_pred CeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhC
Q 008638 292 SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLG 352 (558)
Q Consensus 292 ~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lg 352 (558)
++-+|++-|.-.++......-.. ++......-.+++|++|..++ .+..+|+.....
T Consensus 263 ~~D~VLIDTAGRs~~d~~l~eel----~~l~~~~~p~e~~LVLsAt~~-~~~l~~i~~~f~ 318 (767)
T PRK14723 263 DKHLVLIDTVGMSQRDRNVSEQI----AMLCGVGRPVRRLLLLNAASH-GDTLNEVVHAYR 318 (767)
T ss_pred CCCEEEEeCCCCCccCHHHHHHH----HHHhccCCCCeEEEEECCCCc-HHHHHHHHHHHh
Confidence 23467777777665443322111 111111235578888888775 445555554443
No 216
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.65 E-value=0.11 Score=49.28 Aligned_cols=36 Identities=25% Similarity=0.464 Sum_probs=27.3
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCE
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGF 257 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v 257 (558)
+.+.+|+..+|+|+.|+|||||+. ++....+.+.+-
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl~-~i~G~~~~~~G~ 58 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLK-LLLRLYDPTSGE 58 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHH-HHHcCCCCCCCE
Confidence 567899999999999999999996 444443433343
No 217
>PRK08760 replicative DNA helicase; Provisional
Probab=92.65 E-value=0.13 Score=57.19 Aligned_cols=67 Identities=22% Similarity=0.143 Sum_probs=49.4
Q ss_pred eeeeeeeEeeccc-ccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHH
Q 008638 209 ILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMI 278 (558)
Q Consensus 209 ~l~TGIkvID~l~-PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~ 278 (558)
-+.||+.-+|-++ -+.+|+=+.|-|.+|+|||+++..++.+.+..+ +.+|.....|=+.+ ++...|.
T Consensus 211 Gi~TG~~~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~-g~~V~~fSlEMs~~--ql~~Rl~ 278 (476)
T PRK08760 211 GLPTGYNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKS-KKGVAVFSMEMSAS--QLAMRLI 278 (476)
T ss_pred cccCCcHHHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhc-CCceEEEeccCCHH--HHHHHHH
Confidence 4789999999986 578899999999999999999999999887543 33444445554433 3444443
No 218
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=92.64 E-value=0.084 Score=53.66 Aligned_cols=27 Identities=33% Similarity=0.557 Sum_probs=23.7
Q ss_pred ccccccCceeeeecCCCCChhHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
=+.+.+|+.++|+|++|+|||||+.-+
T Consensus 31 s~~i~~Ge~~~i~G~nGsGKSTLl~~l 57 (265)
T PRK10575 31 SLTFPAGKVTGLIGHNGSGKSTLLKML 57 (265)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 367789999999999999999999644
No 219
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.64 E-value=0.09 Score=51.65 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=23.7
Q ss_pred ccccccCceeeeecCCCCChhHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
=+.+.+|++++|+|++|+|||||+.-|
T Consensus 31 s~~i~~Ge~~~i~G~nGsGKSTLl~~i 57 (214)
T PRK13543 31 DFHVDAGEALLVQGDNGAGKTTLLRVL 57 (214)
T ss_pred eEEECCCCEEEEEcCCCCCHHHHHHHH
Confidence 356889999999999999999999644
No 220
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=92.62 E-value=0.09 Score=54.64 Aligned_cols=28 Identities=32% Similarity=0.438 Sum_probs=24.3
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.++|+|+.|+|||||+.-+.
T Consensus 13 s~~i~~Ge~~~l~G~NGaGKSTLl~~l~ 40 (302)
T TIGR01188 13 NFKVREGEVFGFLGPNGAGKTTTIRMLT 40 (302)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3578899999999999999999996443
No 221
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.59 E-value=0.091 Score=52.72 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=23.3
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+.+|+.++|+|++|+|||||+.-+
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l 51 (252)
T PRK14255 26 LDFNQNEITALIGPSGCGKSTYLRTL 51 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 56889999999999999999999644
No 222
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.59 E-value=0.099 Score=51.94 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=23.7
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|.|+.|+|||||+.-+.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (232)
T cd03300 21 LDIKEGEFFTLLGPSGCGKTTLLRLIA 47 (232)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 667899999999999999999996443
No 223
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=92.58 E-value=0.094 Score=51.75 Aligned_cols=29 Identities=31% Similarity=0.631 Sum_probs=24.5
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+.+.+|+.++|+|+.|+|||||+. +|...
T Consensus 31 ~~i~~Ge~~~i~G~nGsGKSTLl~-~i~Gl 59 (228)
T PRK10584 31 LVVKRGETIALIGESGSGKSTLLA-ILAGL 59 (228)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHH-HHHcC
Confidence 667899999999999999999996 44443
No 224
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.58 E-value=0.095 Score=52.24 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.7
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+...+
T Consensus 16 l~i~~Ge~~~l~G~sGsGKSTL~~~~i 42 (226)
T cd03270 16 VDIPRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred eecCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 678899999999999999999975444
No 225
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.57 E-value=0.093 Score=50.23 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=24.0
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+..+|+|++|+|||||+.-+.
T Consensus 20 s~~i~~G~~~~i~G~nGsGKSTLl~~l~ 47 (182)
T cd03215 20 SFEVRAGEIVGIAGLVGNGQTELAEALF 47 (182)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3668899999999999999999996443
No 226
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=92.55 E-value=0.099 Score=49.49 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=23.7
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|++++|+|+.|+|||||+.-+.
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (166)
T cd03223 22 FEIKPGDRLLITGPSGTGKSSLFRALA 48 (166)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 567899999999999999999996443
No 227
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.54 E-value=0.11 Score=51.39 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=24.0
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.++|.|+.|+|||||+.-|.
T Consensus 21 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 48 (236)
T cd03253 21 SFTIPAGKKVAIVGPSGSGKSTILRLLF 48 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3567799999999999999999996443
No 228
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=92.54 E-value=0.097 Score=51.96 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=23.2
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+.+|+.++|+|++|+|||||+.-+
T Consensus 30 l~i~~Ge~~~l~G~nGsGKSTLl~~l 55 (233)
T PRK11629 30 FSIGEGEMMAIVGSSGSGKSTLLHLL 55 (233)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHH
Confidence 56889999999999999999999644
No 229
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=92.54 E-value=0.094 Score=52.66 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=23.8
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 53 (253)
T PRK14242 27 LEFEQNQVTALIGPSGCGKSTFLRCLN 53 (253)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHH
Confidence 568899999999999999999996544
No 230
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=92.54 E-value=0.095 Score=52.19 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=23.9
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 49 (242)
T TIGR03411 23 LYVDPGELRVIIGPNGAGKTTMMDVIT 49 (242)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 578899999999999999999996444
No 231
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=92.52 E-value=0.096 Score=51.30 Aligned_cols=30 Identities=27% Similarity=0.463 Sum_probs=24.7
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
=+.+.+|+.++|+|++|+|||||+. ++...
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~-~l~Gl 51 (220)
T cd03263 22 SLNVYKGEIFGLLGHNGAGKTTTLK-MLTGE 51 (220)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHH-HHhCC
Confidence 3567899999999999999999996 44443
No 232
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=92.52 E-value=0.096 Score=53.37 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=24.5
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 31 isl~i~~Ge~~~I~G~NGsGKSTLlk~l~ 59 (257)
T PRK11247 31 LDLHIPAGQFVAVVGRSGCGKSTLLRLLA 59 (257)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 33568899999999999999999996443
No 233
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=92.51 E-value=0.18 Score=48.52 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=27.1
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCch
Q 008638 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTR 268 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~r 268 (558)
.++|.|++|+|||+++..++.+. +.-.+|+..+.-..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~----~~~~~~iat~~~~~ 39 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS----GLQVLYIATAQPFD 39 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc----CCCcEeCcCCCCCh
Confidence 68999999999999998776432 12256777776443
No 234
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=92.49 E-value=0.094 Score=52.02 Aligned_cols=27 Identities=26% Similarity=0.599 Sum_probs=23.6
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|.|+.|+|||||+.-+.
T Consensus 7 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 33 (230)
T TIGR02770 7 LSLKRGEVLALVGESGSGKSLTCLAIL 33 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 567899999999999999999996444
No 235
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=92.49 E-value=0.1 Score=50.81 Aligned_cols=27 Identities=26% Similarity=0.504 Sum_probs=23.7
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~ 47 (208)
T cd03268 21 LHVKKGEIYGFLGPNGAGKTTTMKIIL 47 (208)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 568899999999999999999996543
No 236
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=92.49 E-value=0.098 Score=51.79 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=24.0
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.++|+|++|+|||||+.-++
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (225)
T PRK10247 27 SFSLRAGEFKLITGPSGCGKSTLLKIVA 54 (225)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3667899999999999999999996443
No 237
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=92.48 E-value=0.098 Score=51.08 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=23.7
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+-+|.++.|.||+|+|||||+..+.
T Consensus 24 l~v~~Ge~iaitGPSG~GKStllk~va 50 (223)
T COG4619 24 LSVRAGEFIAITGPSGCGKSTLLKIVA 50 (223)
T ss_pred eeecCCceEEEeCCCCccHHHHHHHHH
Confidence 567899999999999999999997544
No 238
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.47 E-value=0.13 Score=57.70 Aligned_cols=29 Identities=24% Similarity=0.504 Sum_probs=25.6
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
+.|.||.|++|+|++|+||||++.-+.+-
T Consensus 373 f~I~kGekVaIvG~nGsGKSTilr~LlrF 401 (591)
T KOG0057|consen 373 FTIPKGEKVAIVGSNGSGKSTILRLLLRF 401 (591)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999765543
No 239
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=92.46 E-value=0.096 Score=55.30 Aligned_cols=33 Identities=30% Similarity=0.474 Sum_probs=26.6
Q ss_pred eEeec-ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 215 KVVDL-LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 215 kvID~-l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+++|- =+.|.+|+.++|+|++|+|||||+.-+.
T Consensus 21 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~ 54 (330)
T PRK15093 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAIC 54 (330)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHH
Confidence 34443 3588999999999999999999997554
No 240
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.45 E-value=0.3 Score=50.24 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=19.2
Q ss_pred CceeeeecCCCCChhHHHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
.+-+.|.|++|+|||+|+..+.+
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~ 52 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIAN 52 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999986654
No 241
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.45 E-value=0.11 Score=53.58 Aligned_cols=48 Identities=29% Similarity=0.545 Sum_probs=35.7
Q ss_pred eeEee-cccccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEE
Q 008638 214 IKVVD-LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG 262 (558)
Q Consensus 214 IkvID-~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~ 262 (558)
++++| .=+.|.+|...||+|.+|+|||||...++ ..-+-..+-..|-+
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~-~L~~pt~G~i~f~g 74 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLIL-GLEEPTSGEILFEG 74 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHH-cCcCCCCceEEEcC
Confidence 47776 67899999999999999999999996554 33343335455543
No 242
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=92.43 E-value=0.099 Score=52.79 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=24.1
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~la 51 (258)
T PRK14241 24 NLNIEPRSVTAFIGPSGCGKSTVLRTLN 51 (258)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3668899999999999999999996443
No 243
>PF13245 AAA_19: Part of AAA domain
Probab=92.43 E-value=0.16 Score=42.59 Aligned_cols=27 Identities=26% Similarity=0.382 Sum_probs=21.0
Q ss_pred Cceee-eecCCCCChhHHHHHHHHHHHh
Q 008638 226 GGKIG-LFGGAGVGKTVLIMELINNVAK 252 (558)
Q Consensus 226 Gqr~g-IfGg~g~GKT~L~~~~i~n~a~ 252 (558)
|+++. |-|++|+|||+++.+.+.....
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44444 5999999999888888877764
No 244
>PRK05595 replicative DNA helicase; Provisional
Probab=92.42 E-value=0.15 Score=56.02 Aligned_cols=57 Identities=23% Similarity=0.276 Sum_probs=43.8
Q ss_pred ceeeeeeeEeecccc-cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecC
Q 008638 208 QILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265 (558)
Q Consensus 208 e~l~TGIkvID~l~P-igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGE 265 (558)
.-+.||+..+|-++- +.+|+=+.|-|.+|+|||+++..++.+.+..+ +..|.....|
T Consensus 182 ~gi~tg~~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~-g~~vl~fSlE 239 (444)
T PRK05595 182 TGVASGFRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALRE-GKSVAIFSLE 239 (444)
T ss_pred CcccCChHHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHc-CCcEEEEecC
Confidence 347999999999864 77888888999999999999999998876443 3344333444
No 245
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=92.42 E-value=0.1 Score=51.48 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=24.3
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 7 s~~i~~Ge~~~l~G~NGsGKSTLlk~i~ 34 (213)
T PRK15177 7 DFVMGYHEHIGILAAPGSGKTTLTRLLC 34 (213)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3678999999999999999999996444
No 246
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=92.42 E-value=0.1 Score=52.48 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=23.8
Q ss_pred ccccccCceeeeecCCCCChhHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
=+.+.+|+.++|+|++|+|||||+.-|
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l 46 (252)
T TIGR03005 20 NFSVAAGEKVALIGPSGSGKSTILRIL 46 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 367889999999999999999999644
No 247
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.42 E-value=0.081 Score=54.56 Aligned_cols=27 Identities=26% Similarity=0.562 Sum_probs=23.6
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.|.+|+.++|+|++|+|||||+.-|.
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~L~ 54 (286)
T PRK13646 28 TEFEQGKYYAIVGQTGSGKSTLIQNIN 54 (286)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 467799999999999999999996443
No 248
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.39 E-value=0.76 Score=50.65 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=23.1
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.++..++++|++|+||||++..++...
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356679999999999999999998754
No 249
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=92.39 E-value=0.12 Score=55.20 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=27.5
Q ss_pred EeecccccccCceeeeecCCCCChhHHHHHHH
Q 008638 216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 216 vID~l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
.+|.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 14 ~~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~ia 45 (352)
T PRK11144 14 CLTVNLTLPAQGITAIFGRSGAGKTSLINAIS 45 (352)
T ss_pred EEEEEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 35777889999999999999999999996443
No 250
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=92.37 E-value=0.11 Score=49.24 Aligned_cols=27 Identities=22% Similarity=0.476 Sum_probs=23.5
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|+.|+|||||+.-+.
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~ 49 (173)
T cd03246 23 FSIEPGESLAIIGPSGSGKSTLARLIL 49 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHH
Confidence 567899999999999999999996443
No 251
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=92.36 E-value=0.1 Score=51.88 Aligned_cols=27 Identities=33% Similarity=0.511 Sum_probs=23.5
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 6 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 32 (230)
T TIGR01184 6 LTIQQGEFISLIGHSGCGKSTLLNLIS 32 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 567899999999999999999996443
No 252
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.35 E-value=0.11 Score=49.35 Aligned_cols=26 Identities=38% Similarity=0.618 Sum_probs=23.0
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+.+|+.++|+|++|+|||||+.-+
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l 46 (173)
T cd03230 21 LTVEKGEIYGLLGPNGAGKTTLIKII 46 (173)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHH
Confidence 45779999999999999999999644
No 253
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.33 E-value=0.64 Score=44.57 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.2
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
+..++.|++|+|||+++..+++...
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHc
Confidence 5688999999999999988877653
No 254
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.32 E-value=0.11 Score=50.72 Aligned_cols=29 Identities=31% Similarity=0.389 Sum_probs=24.6
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
|.=+.+.+|+.++|+|+.|+|||||+.-+
T Consensus 19 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l 47 (204)
T PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRIL 47 (204)
T ss_pred cceEEECCCcEEEEECCCCCCHHHHHHHH
Confidence 34466889999999999999999999644
No 255
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=92.31 E-value=0.1 Score=52.39 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=24.0
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+-+|++++|+|++|+|||||+.-+.
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 50 (253)
T TIGR02323 23 SFDLYPGEVLGIVGESGSGKSTLLGCLA 50 (253)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence 3667899999999999999999996443
No 256
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=92.31 E-value=0.11 Score=52.20 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=23.7
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (252)
T PRK14239 26 LDFYPNEITALIGPSGSGKSTLLRSIN 52 (252)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 567899999999999999999996443
No 257
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=92.30 E-value=0.1 Score=53.22 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=25.8
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
|.=+.+.+|+.++|+|++|+|||||+. ++...
T Consensus 25 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~-~l~Gl 56 (272)
T PRK15056 25 DASFTVPGGSIAALVGVNGSGKSTLFK-ALMGF 56 (272)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHH-HHhCC
Confidence 344678899999999999999999996 44443
No 258
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=92.29 E-value=0.11 Score=51.67 Aligned_cols=29 Identities=24% Similarity=0.547 Sum_probs=25.5
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
|.=+.+.+|+.++|+|++|+|||||+.-+
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l 45 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLI 45 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 55677899999999999999999999644
No 259
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=92.27 E-value=0.11 Score=51.18 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=23.8
Q ss_pred ccccccCceeeeecCCCCChhHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
=+.+.+|+.++|.|++|+|||||+.-+
T Consensus 28 s~~i~~Ge~~~l~G~nGsGKSTLl~~i 54 (224)
T TIGR02324 28 SLTVNAGECVALSGPSGAGKSTLLKSL 54 (224)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 367889999999999999999999644
No 260
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=92.25 E-value=0.11 Score=53.06 Aligned_cols=32 Identities=31% Similarity=0.557 Sum_probs=26.1
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
|.=+.+.+|+.++|+|++|+|||||+. +|...
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~-~l~Gl 56 (269)
T PRK11831 25 NISLTVPRGKITAIMGPSGIGKTTLLR-LIGGQ 56 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHH-HHhCC
Confidence 344778899999999999999999996 44433
No 261
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.25 E-value=0.082 Score=54.54 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=23.7
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|+.|+|||||+.-|.
T Consensus 28 l~i~~Ge~~~iiG~NGaGKSTLl~~l~ 54 (287)
T PRK13641 28 FELEEGSFVALVGHTGSGKSTLMQHFN 54 (287)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence 568899999999999999999996443
No 262
>PRK07004 replicative DNA helicase; Provisional
Probab=92.24 E-value=0.18 Score=55.84 Aligned_cols=59 Identities=25% Similarity=0.192 Sum_probs=46.4
Q ss_pred eeeeeeeEeeccc-ccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCch
Q 008638 209 ILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTR 268 (558)
Q Consensus 209 ~l~TGIkvID~l~-PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~r 268 (558)
-+.||++-+|-++ -+.+|+=+.|-|.+|+|||+++..++.+.+..+ +.+|....-|=+.
T Consensus 195 gi~TG~~~LD~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~-~~~v~~fSlEM~~ 254 (460)
T PRK07004 195 GTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEY-GLPVAVFSMEMPG 254 (460)
T ss_pred CccCCcHHhcccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHc-CCeEEEEeCCCCH
Confidence 4789999999986 588999999999999999999999998877543 3445444555443
No 263
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.24 E-value=0.11 Score=52.32 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=23.8
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (254)
T PRK14273 28 IKILKNSITALIGPSGCGKSTFLRTLN 54 (254)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 568899999999999999999996443
No 264
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.24 E-value=0.11 Score=52.92 Aligned_cols=27 Identities=19% Similarity=0.395 Sum_probs=23.6
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-++
T Consensus 42 l~i~~Ge~~~i~G~nGsGKSTLl~~l~ 68 (268)
T PRK14248 42 MDIEKHAVTALIGPSGCGKSTFLRSIN 68 (268)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 567899999999999999999996443
No 265
>PRK10908 cell division protein FtsE; Provisional
Probab=92.24 E-value=0.11 Score=51.04 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.6
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (222)
T PRK10908 23 FHMRPGEMAFLTGHSGAGKSTLLKLIC 49 (222)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 567899999999999999999996443
No 266
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.24 E-value=0.096 Score=53.92 Aligned_cols=31 Identities=32% Similarity=0.523 Sum_probs=26.1
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
|+=+.+.+|.-.+|+||.|+|||||+.-+..
T Consensus 20 ~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 20 DLSFSIPKGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred cceEEecCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3446789999999999999999999975543
No 267
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=92.22 E-value=0.12 Score=45.43 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=18.7
Q ss_pred eeeecCCCCChhHHHHHHHHHH
Q 008638 229 IGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
++|.|++|+|||+++..++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999998777653
No 268
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=92.21 E-value=0.11 Score=54.15 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=24.2
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.++|+|+.|+|||||+.-+.
T Consensus 24 sl~i~~Ge~~~l~G~NGaGKSTLl~~l~ 51 (303)
T TIGR01288 24 SFTIARGECFGLLGPNGAGKSTIARMLL 51 (303)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3678899999999999999999996443
No 269
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=92.21 E-value=0.11 Score=55.55 Aligned_cols=32 Identities=28% Similarity=0.473 Sum_probs=26.3
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHHHHHHh
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~ 252 (558)
=+.+.+|+..+|+|++|+|||||+. +|+...+
T Consensus 25 sl~i~~Gei~gIiG~sGaGKSTLlr-~I~gl~~ 56 (343)
T TIGR02314 25 SLHVPAGQIYGVIGASGAGKSTLIR-CVNLLER 56 (343)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHH-HHhcCCC
Confidence 3568899999999999999999995 5555444
No 270
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=92.20 E-value=0.11 Score=50.57 Aligned_cols=27 Identities=41% Similarity=0.733 Sum_probs=23.6
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+-+.+|+.++|+|+.|+|||||+.-|.
T Consensus 29 l~i~~G~~~~i~G~nGsGKSTLl~~l~ 55 (207)
T cd03369 29 FKVKAGEKIGIVGRTGAGKSTLILALF 55 (207)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 567799999999999999999996443
No 271
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=92.19 E-value=0.12 Score=50.09 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=23.5
Q ss_pred ccccccCceeeeecCCCCChhHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
=+.+.+|+.++|+|+.|+|||||+.-+
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l 46 (198)
T TIGR01189 20 SFTLNAGEALQVTGPNGIGKTTLLRIL 46 (198)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHH
Confidence 456789999999999999999999644
No 272
>PRK08506 replicative DNA helicase; Provisional
Probab=92.19 E-value=0.14 Score=56.97 Aligned_cols=55 Identities=20% Similarity=0.177 Sum_probs=43.6
Q ss_pred eeeeeeeEeeccc-ccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecC
Q 008638 209 ILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265 (558)
Q Consensus 209 ~l~TGIkvID~l~-PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGE 265 (558)
-+.||+..+|-++ -+.+|+=+.|-|.+|+|||+++..++.|.++. +.+|....-|
T Consensus 174 Gi~TG~~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~--g~~V~~fSlE 229 (472)
T PRK08506 174 GLDTGFVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALNQ--DKGVAFFSLE 229 (472)
T ss_pred cccCChHHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHhc--CCcEEEEeCc
Confidence 4899999999986 47788899999999999999999999887653 3344333444
No 273
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=92.18 E-value=0.11 Score=52.00 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=24.0
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (247)
T TIGR00972 21 NLDIPKNQVTALIGPSGCGKSTLLRSLN 48 (247)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3567899999999999999999996443
No 274
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=92.17 E-value=0.11 Score=52.65 Aligned_cols=27 Identities=26% Similarity=0.519 Sum_probs=23.5
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+-+|+.++|+|+.|+|||||+.-|.
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 49 (258)
T PRK13548 23 LTLRPGEVVAILGPNGAGKSTLLRALS 49 (258)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 567899999999999999999996443
No 275
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.16 E-value=0.17 Score=51.57 Aligned_cols=68 Identities=24% Similarity=0.444 Sum_probs=41.9
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEE---ecCCchhHHHHHHHHHHhcccccCcccCCCeEEEE
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG---VGERTREGNDLYREMIESGVIKLGDKQADSKCALV 297 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~---iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV 297 (558)
+-|-+|+-+.|+|++|+|||||+..+ +.......+-..+-+ ++-++.|..++. .++-+|
T Consensus 25 l~I~~GE~VaiIG~SGaGKSTLLR~l-ngl~d~t~G~i~~~g~~i~~~~~k~lr~~r-----------------~~iGmI 86 (258)
T COG3638 25 LEINQGEMVAIIGPSGAGKSTLLRSL-NGLVDPTSGEILFNGVQITKLKGKELRKLR-----------------RDIGMI 86 (258)
T ss_pred EEeCCCcEEEEECCCCCcHHHHHHHH-hcccCCCcceEEecccchhccchHHHHHHH-----------------HhceeE
Confidence 56889999999999999999999644 433222222222222 344444443322 245678
Q ss_pred EecCCCCHH
Q 008638 298 YGQMNEPPG 306 (558)
Q Consensus 298 ~~t~~ep~~ 306 (558)
+-+.|=.|-
T Consensus 87 fQ~~nLv~r 95 (258)
T COG3638 87 FQQFNLVPR 95 (258)
T ss_pred eccCCcccc
Confidence 777775543
No 276
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=92.16 E-value=1.8 Score=38.88 Aligned_cols=20 Identities=40% Similarity=0.519 Sum_probs=17.0
Q ss_pred eeeecCCCCChhHHHHHHHH
Q 008638 229 IGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i~ 248 (558)
+.+.|++|+||||++..+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999987653
No 277
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.15 E-value=0.11 Score=53.55 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=23.7
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 32 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 58 (289)
T PRK13645 32 LTFKKNKVTCVIGTTGSGKSTMIQLTN 58 (289)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence 578899999999999999999996443
No 278
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.13 E-value=0.27 Score=44.45 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=19.1
Q ss_pred eeeecCCCCChhHHHHHHHHHH
Q 008638 229 IGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+.|.|++|+|||+|+..+....
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999998887654
No 279
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=92.12 E-value=0.11 Score=54.88 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=24.3
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.|.+|+.++|+|++|+|||||+.-|+
T Consensus 35 sl~i~~Ge~~~IvG~sGsGKSTLl~~l~ 62 (327)
T PRK11308 35 SFTLERGKTLAVVGESGCGKSTLARLLT 62 (327)
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHH
Confidence 4567899999999999999999996544
No 280
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=92.12 E-value=0.11 Score=50.85 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=24.2
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+.+.+|+.++|+|++|+|||||+. +|...
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~-~i~G~ 50 (218)
T cd03290 22 IRIPTGQLTMIVGQVGCGKSSLLL-AILGE 50 (218)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHH-HHhcc
Confidence 467799999999999999999996 44443
No 281
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.10 E-value=0.12 Score=51.85 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=24.0
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
+.+.+|+.++|+|++|+|||||+. +|..
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~-~i~G 51 (250)
T PRK14262 24 MKIFKNQITAIIGPSGCGKTTLLR-SINR 51 (250)
T ss_pred EeecCCCEEEEECCCCCCHHHHHH-HHhc
Confidence 567799999999999999999996 4443
No 282
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=92.09 E-value=0.21 Score=46.66 Aligned_cols=46 Identities=26% Similarity=0.429 Sum_probs=27.1
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCC
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER 266 (558)
...-+.+.-+.|.|++|+|||+|+.++.....+. ..+.+..-+-..
T Consensus 18 ~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~-~~~~~~~~~~~~ 63 (185)
T PF13191_consen 18 AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER-GGYVISINCDDS 63 (185)
T ss_dssp GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH-T--EEEEEEETT
T ss_pred HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCEEEEEEEecc
Confidence 4566778889999999999999999988877654 334444444443
No 283
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=92.08 E-value=0.12 Score=52.66 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=23.8
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-|.
T Consensus 41 l~i~~Ge~~~I~G~nGsGKSTLl~~l~ 67 (267)
T PRK14237 41 MQFEKNKITALIGPSGSGKSTYLRSLN 67 (267)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 667899999999999999999996443
No 284
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=92.06 E-value=0.12 Score=52.62 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=24.1
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.++|+|++|+|||||+.-|.
T Consensus 30 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 57 (264)
T PRK14243 30 WLDIPKNQITAFIGPSGCGKSTILRCFN 57 (264)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 3667899999999999999999996443
No 285
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=92.05 E-value=0.12 Score=50.34 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=24.8
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 19 is~~i~~Ge~~~i~G~nGsGKStLl~~l~ 47 (200)
T cd03217 19 VNLTIKKGEVHALMGPNGSGKSTLAKTIM 47 (200)
T ss_pred cceEECCCcEEEEECCCCCCHHHHHHHHh
Confidence 34578899999999999999999996443
No 286
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.02 E-value=0.12 Score=52.18 Aligned_cols=46 Identities=22% Similarity=0.427 Sum_probs=32.1
Q ss_pred eEe-ecccccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEE
Q 008638 215 KVV-DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFA 261 (558)
Q Consensus 215 kvI-D~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~ 261 (558)
.++ |.=+.|.+|.-+.|.|++|+|||||+. ++-...+-..+...|.
T Consensus 19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLn-iig~ld~pt~G~v~i~ 65 (226)
T COG1136 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLN-LLGGLDKPTSGEVLIN 65 (226)
T ss_pred EecccceEEEcCCCEEEEECCCCCCHHHHHH-HHhcccCCCCceEEEC
Confidence 444 445689999999999999999999994 5544434333443343
No 287
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=92.02 E-value=0.12 Score=50.80 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=23.1
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+-+|+.++|+|++|+|||||+.-+
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l 46 (223)
T TIGR03740 21 LTVPKNSVYGLLGPNGAGKSTLLKMI 46 (223)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHH
Confidence 56789999999999999999999644
No 288
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=92.02 E-value=0.12 Score=50.89 Aligned_cols=29 Identities=28% Similarity=0.518 Sum_probs=24.3
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+.+.+|+.++|+|+.|+|||||+. ++...
T Consensus 35 ~~i~~Ge~~~i~G~nGsGKSTLl~-~l~Gl 63 (226)
T cd03248 35 FTLHPGEVTALVGPSGSGKSTVVA-LLENF 63 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHH-HHhcC
Confidence 567899999999999999999996 44443
No 289
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=92.01 E-value=0.12 Score=52.34 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=23.8
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|+.|+|||||+.-|.
T Consensus 25 ~~i~~Ge~~~I~G~NGsGKSTLl~~i~ 51 (251)
T PRK09544 25 LELKPGKILTLLGPNGAGKSTLVRVVL 51 (251)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 668899999999999999999996443
No 290
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.01 E-value=0.12 Score=51.69 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=24.0
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.++|+|+.|+|||||+.-+.
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 50 (250)
T PRK14266 23 NLDIPKNSVTALIGPSGCGKSTFIRTLN 50 (250)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 3567899999999999999999996443
No 291
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.99 E-value=0.12 Score=51.91 Aligned_cols=27 Identities=15% Similarity=0.418 Sum_probs=23.5
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.|.+|+.++|+|++|+|||||+.-|.
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~ 51 (252)
T PRK14256 25 MDFPENSVTAIIGPSGCGKSTVLRSIN 51 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999999996443
No 292
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.99 E-value=0.12 Score=52.96 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=23.6
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 54 (280)
T PRK13649 28 LTIEDGSYTAFIGHTGSGKSTIMQLLN 54 (280)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 567899999999999999999996443
No 293
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.99 E-value=0.12 Score=52.73 Aligned_cols=29 Identities=17% Similarity=0.454 Sum_probs=24.6
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+.+.+|+.++|+|++|+|||||+. ++...
T Consensus 30 l~i~~Ge~~~l~G~nGsGKSTLl~-~l~Gl 58 (271)
T PRK13632 30 FEINEGEYVAILGHNGSGKSTISK-ILTGL 58 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHH-HHhcC
Confidence 568899999999999999999996 44443
No 294
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.97 E-value=0.15 Score=53.76 Aligned_cols=36 Identities=31% Similarity=0.565 Sum_probs=31.2
Q ss_pred eeEeecc-cccccCceeeeecCCCCChhHHHHHHHHH
Q 008638 214 IKVVDLL-APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 214 IkvID~l-~PigkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
+++||-+ +-+.+|+.+||+|-+|+|||++++.++.-
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~l 54 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGL 54 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhc
Confidence 6777764 78999999999999999999999877754
No 295
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=91.97 E-value=0.12 Score=52.13 Aligned_cols=31 Identities=29% Similarity=0.492 Sum_probs=25.4
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.=+.+.+|+.++|+|++|+|||||+. ++...
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLl~-~l~Gl 52 (254)
T PRK10418 22 VSLTLQRGRVLALVGGSGSGKSLTCA-AALGI 52 (254)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHH-HHhCC
Confidence 33678899999999999999999995 44433
No 296
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=91.95 E-value=0.36 Score=49.48 Aligned_cols=28 Identities=32% Similarity=0.590 Sum_probs=22.9
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHHHh
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNVAK 252 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~a~ 252 (558)
.-..+++.|.+|||||+|+..+.+..+.
T Consensus 51 pannvLL~G~rGtGKSSlVkall~~y~~ 78 (249)
T PF05673_consen 51 PANNVLLWGARGTGKSSLVKALLNEYAD 78 (249)
T ss_pred CCcceEEecCCCCCHHHHHHHHHHHHhh
Confidence 3456889999999999999988876544
No 297
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.95 E-value=1.2 Score=45.07 Aligned_cols=161 Identities=19% Similarity=0.165 Sum_probs=89.9
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEec---
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQ--- 300 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t--- 300 (558)
--|+=+.|.|+.|+|||+|+|.++-...++ +..|....-|.+ +.++++.|...+..- .+ .-.+...+++..
T Consensus 26 P~GsL~lIEGd~~tGKSvLsqr~~YG~L~~--g~~v~yvsTe~T--~refi~qm~sl~ydv-~~-~~l~G~l~~~~~~~~ 99 (235)
T COG2874 26 PVGSLILIEGDNGTGKSVLSQRFAYGFLMN--GYRVTYVSTELT--VREFIKQMESLSYDV-SD-FLLSGRLLFFPVNLE 99 (235)
T ss_pred ccCeEEEEECCCCccHHHHHHHHHHHHHhC--CceEEEEEechh--HHHHHHHHHhcCCCc-hH-HHhcceeEEEEeccc
Confidence 457889999999999999999998765543 677776666643 566777665543211 11 112333445553
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCC-
Q 008638 301 -MNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT- 378 (558)
Q Consensus 301 -~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~- 378 (558)
.+.-...+ +.-+- -+.|+-+- ..+|| +++||++-++.=-.|.. .=.+++.+.+.
T Consensus 100 ~~~~~~~~~-~~~L~--~l~~~~k~-~~~dV-iIIDSls~~~~~~~~~~-------------------vl~fm~~~r~l~ 155 (235)
T COG2874 100 PVNWGRRSA-RKLLD--LLLEFIKR-WEKDV-IIIDSLSAFATYDSEDA-------------------VLNFMTFLRKLS 155 (235)
T ss_pred ccccChHHH-HHHHH--HHHhhHHh-hcCCE-EEEecccHHhhcccHHH-------------------HHHHHHHHHHHH
Confidence 22222211 11111 12233332 34555 56899986654332221 11233332221
Q ss_pred CCCceeeEEEEeecCCCCCCchhhhHhhhcCcEEEeehh
Q 008638 379 KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQ 417 (558)
Q Consensus 379 ~~GSIT~i~~V~v~~dD~~dpip~~~~~ilDg~ivLsr~ 417 (558)
..|= |++-||. .+-+.+.+..-++++-|.++.|+-.
T Consensus 156 d~gK-vIilTvh--p~~l~e~~~~rirs~~d~~l~L~~~ 191 (235)
T COG2874 156 DLGK-VIILTVH--PSALDEDVLTRIRSACDVYLRLRLE 191 (235)
T ss_pred hCCC-EEEEEeC--hhhcCHHHHHHHHHhhheeEEEEhh
Confidence 1222 5555554 4567777888889999999988764
No 298
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.94 E-value=0.13 Score=52.51 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=25.8
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
|.=+.+.+|+.++|+|++|+|||||+. +|...
T Consensus 27 ~isl~i~~Ge~~~I~G~nGsGKSTLl~-~i~Gl 58 (269)
T PRK13648 27 DVSFNIPKGQWTSIVGHNGSGKSTIAK-LMIGI 58 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHH-HHhcC
Confidence 333667899999999999999999996 44443
No 299
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.93 E-value=0.11 Score=50.64 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=24.3
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+.+-+|+.++|+|++|+|||||+. ++...
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~-~l~G~ 56 (202)
T cd03233 28 GVVKPGEMVLVLGRPGSGCSTLLK-ALANR 56 (202)
T ss_pred EEECCCcEEEEECCCCCCHHHHHH-Hhccc
Confidence 567799999999999999999996 44443
No 300
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=91.92 E-value=0.12 Score=51.54 Aligned_cols=27 Identities=30% Similarity=0.509 Sum_probs=23.5
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|+.|+|||||+.-|.
T Consensus 42 ~~i~~Ge~~~i~G~NGsGKSTLl~~i~ 68 (236)
T cd03267 42 FTIEKGEIVGFIGPNGAGKTTTLKILS 68 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 567799999999999999999996443
No 301
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=91.92 E-value=0.12 Score=51.04 Aligned_cols=26 Identities=35% Similarity=0.709 Sum_probs=22.6
Q ss_pred ccccCceeeeecCCCCChhHHHHHHH
Q 008638 222 PYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 222 PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
.+.+|+.++|+|++|+|||||+.-+.
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~ 27 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAIL 27 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHh
Confidence 46789999999999999999996443
No 302
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.91 E-value=0.12 Score=52.82 Aligned_cols=26 Identities=35% Similarity=0.607 Sum_probs=23.2
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+.+|+.++|+|++|+|||||+.-+
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l 47 (271)
T PRK13638 22 LDFSLSPVTGLVGANGCGKSTLFMNL 47 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 56789999999999999999999644
No 303
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=91.89 E-value=0.12 Score=52.58 Aligned_cols=29 Identities=21% Similarity=0.417 Sum_probs=24.6
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+.+.+|++++|+|+.|+|||||+. +|...
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~-~i~G~ 56 (265)
T PRK10253 28 VEIPDGHFTAIIGPNGCGKSTLLR-TLSRL 56 (265)
T ss_pred eEECCCCEEEEECCCCCCHHHHHH-HHcCC
Confidence 678899999999999999999996 44443
No 304
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=91.87 E-value=0.13 Score=52.18 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=23.7
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 34 l~i~~Ge~~~i~G~nGsGKSTLl~~l~ 60 (260)
T PRK10744 34 LDIAKNQVTAFIGPSGCGKSTLLRTFN 60 (260)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 567899999999999999999996443
No 305
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=91.85 E-value=0.12 Score=52.42 Aligned_cols=32 Identities=28% Similarity=0.586 Sum_probs=26.1
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
|.=+.+.+|+.++|+|++|+|||||+. +|...
T Consensus 29 ~isl~i~~Ge~~~i~G~nGsGKSTLl~-~l~Gl 60 (265)
T TIGR02769 29 NVSLSIEEGETVGLLGRSGCGKSTLAR-LLLGL 60 (265)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHHH-HHhCC
Confidence 344678899999999999999999996 44443
No 306
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=91.84 E-value=0.13 Score=52.54 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=24.5
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+.|.+|+.++|+|++|+|||||+. +|...
T Consensus 45 l~i~~Ge~~~I~G~nGsGKSTLl~-~i~Gl 73 (271)
T PRK14238 45 LDIHENEVTAIIGPSGCGKSTYIK-TLNRM 73 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHH-HHHhh
Confidence 567899999999999999999996 44444
No 307
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=91.84 E-value=0.82 Score=50.62 Aligned_cols=33 Identities=24% Similarity=0.413 Sum_probs=24.6
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhhcCCEEEE
Q 008638 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVF 260 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~ 260 (558)
.+.|.|++|+|||.|++-+.+...+.+++..|+
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~ 175 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVS 175 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEE
Confidence 478999999999999987776554444555543
No 308
>PRK07773 replicative DNA helicase; Validated
Probab=91.83 E-value=0.21 Score=59.68 Aligned_cols=57 Identities=23% Similarity=0.228 Sum_probs=45.8
Q ss_pred ceeeeeeeEeeccc-ccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecC
Q 008638 208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265 (558)
Q Consensus 208 e~l~TGIkvID~l~-PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGE 265 (558)
..+.||+..+|-++ -+.+|+=+.|-|.+|+|||+++..++.|.+..++ .+|....-|
T Consensus 198 ~Gi~TG~~~LD~l~~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~-~~V~~fSlE 255 (886)
T PRK07773 198 RGVPTGFTELDAMTNGLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHR-LAVAIFSLE 255 (886)
T ss_pred CCccCChhHhccccCCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcC-CeEEEEecC
Confidence 45899999999987 4778999999999999999999999999886543 344333344
No 309
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.82 E-value=0.13 Score=51.58 Aligned_cols=27 Identities=15% Similarity=0.354 Sum_probs=23.8
Q ss_pred ccccccCceeeeecCCCCChhHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
=+.+.+|+.++|+|++|+|||||+.-+
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~i 49 (250)
T PRK14245 23 SMEIEEKSVVAFIGPSGCGKSTFLRLF 49 (250)
T ss_pred eEEEeCCCEEEEECCCCCCHHHHHHHH
Confidence 356889999999999999999999644
No 310
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.81 E-value=0.13 Score=52.09 Aligned_cols=25 Identities=36% Similarity=0.626 Sum_probs=22.0
Q ss_pred ccccCceeeeecCCCCChhHHHHHH
Q 008638 222 PYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 222 PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
.+.+|+.++|+|+.|+|||||+.-+
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLlk~L 45 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKML 45 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHHHHH
Confidence 4679999999999999999999644
No 311
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.80 E-value=0.14 Score=52.61 Aligned_cols=34 Identities=24% Similarity=0.457 Sum_probs=26.9
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHHHHHHh
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~ 252 (558)
|.=+.|.+|+.++|+|++|+|||||+. ++....+
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~-~l~Gl~~ 58 (279)
T PRK13650 25 DVSFHVKQGEWLSIIGHNGSGKSTTVR-LIDGLLE 58 (279)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHH-HHhcCCC
Confidence 334678899999999999999999996 4444433
No 312
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=91.80 E-value=0.13 Score=55.06 Aligned_cols=32 Identities=31% Similarity=0.563 Sum_probs=26.1
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
|.=+.+.+|+.++|+|++|+|||||+. +|...
T Consensus 20 ~isl~i~~Ge~~~llGpsGsGKSTLLr-~IaGl 51 (353)
T PRK10851 20 DISLDIPSGQMVALLGPSGSGKTTLLR-IIAGL 51 (353)
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHHH-HHhCC
Confidence 344678899999999999999999996 44443
No 313
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.79 E-value=0.13 Score=52.49 Aligned_cols=27 Identities=26% Similarity=0.570 Sum_probs=23.3
Q ss_pred cccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+.+|++++|+|++|+|||||+. ++...
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk-~l~Gl 49 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALK-ILAGK 49 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHH-HHhCC
Confidence 8999999999999999999995 44443
No 314
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=91.78 E-value=0.13 Score=49.88 Aligned_cols=27 Identities=26% Similarity=0.473 Sum_probs=23.6
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|.|+.|+|||||+.-+.
T Consensus 30 ~~i~~Ge~~~l~G~nGsGKStLl~~i~ 56 (194)
T cd03213 30 GKAKPGELTAIMGPSGAGKSTLLNALA 56 (194)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 568899999999999999999996443
No 315
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.78 E-value=1.7 Score=43.02 Aligned_cols=33 Identities=12% Similarity=0.033 Sum_probs=26.4
Q ss_pred EeecccccccCceeeeecCCCCChhHHHHHHHH
Q 008638 216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 216 vID~l~PigkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
.-|.-+.+..|...+|.|+.|.||||++..+..
T Consensus 19 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 19 PNDIYLTRGSSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred EeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345555677889999999999999999976653
No 316
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.77 E-value=0.13 Score=50.20 Aligned_cols=26 Identities=38% Similarity=0.553 Sum_probs=22.0
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+| .++|+|++|+|||||+.-+.
T Consensus 21 ~~i~~g-~~~i~G~nGsGKSTLl~~l~ 46 (211)
T cd03264 21 LTLGPG-MYGLLGPNGAGKTTLMRILA 46 (211)
T ss_pred EEEcCC-cEEEECCCCCCHHHHHHHHh
Confidence 556778 99999999999999996443
No 317
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=91.76 E-value=0.13 Score=51.68 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=23.2
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+.+|+.++|+|++|+|||||+.-+
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l 51 (255)
T PRK11300 26 LEVREQEIVSLIGPNGAGKTTVFNCL 51 (255)
T ss_pred eEEcCCeEEEEECCCCCCHHHHHHHH
Confidence 56789999999999999999999643
No 318
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.75 E-value=0.13 Score=52.73 Aligned_cols=30 Identities=23% Similarity=0.374 Sum_probs=25.5
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
|.=+.+.+|+.++|+|++|+|||||+.-|.
T Consensus 39 ~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~ 68 (276)
T PRK14271 39 QVSMGFPARAVTSLMGPTGSGKTTFLRTLN 68 (276)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 444678899999999999999999996544
No 319
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=91.72 E-value=0.14 Score=50.18 Aligned_cols=30 Identities=20% Similarity=0.408 Sum_probs=25.8
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
|.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 45 (213)
T TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIA 45 (213)
T ss_pred eeEEEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence 555778899999999999999999996443
No 320
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.71 E-value=0.14 Score=51.84 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=24.1
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.++|+|++|+|||||+.-|.
T Consensus 32 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 59 (258)
T PRK14268 32 SMQIPKNSVTALIGPSGCGKSTFIRCLN 59 (258)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3678899999999999999999996443
No 321
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=91.69 E-value=0.19 Score=51.34 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=28.8
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhhcCC-EEE-EEEecCCch
Q 008638 229 IGLFGGAGVGKTVLIMELINNVAKAHGG-FSV-FAGVGERTR 268 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i~n~a~~~~~-v~V-~~~iGER~r 268 (558)
.+|+|++|||||||+.|++++.+..... ... .+.|+||.+
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersE 181 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSE 181 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccch
Confidence 6899999999999999999988753111 122 355677643
No 322
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.65 E-value=0.14 Score=51.36 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=25.0
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
=+.+.+|+.++|+|++|+|||||+. +|...
T Consensus 25 s~~i~~Ge~~~I~G~nGsGKSTLl~-~i~G~ 54 (251)
T PRK14244 25 NLDIYKREVTAFIGPSGCGKSTFLR-CFNRM 54 (251)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHH-HHHhh
Confidence 3578899999999999999999996 44433
No 323
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.64 E-value=0.14 Score=51.33 Aligned_cols=26 Identities=35% Similarity=0.537 Sum_probs=23.1
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+.+|+.++|+|++|+|||||+.-+
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~~i 50 (252)
T PRK14272 25 LDVQRGTVNALIGPSGCGKTTFLRAI 50 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 56889999999999999999999644
No 324
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.63 E-value=0.13 Score=53.07 Aligned_cols=32 Identities=28% Similarity=0.523 Sum_probs=26.1
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
|.=+.|.+|++++|+|+.|+|||||+. ++...
T Consensus 24 ~vsl~i~~Ge~v~i~G~nGsGKSTLl~-~l~Gl 55 (288)
T PRK13643 24 DIDLEVKKGSYTALIGHTGSGKSTLLQ-HLNGL 55 (288)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHH-HHhcC
Confidence 444678899999999999999999996 44443
No 325
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.63 E-value=0.15 Score=47.37 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=24.8
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
|.=+.+.+|+..+|+|+.|+|||+|+.-+.
T Consensus 17 ~~~~~i~~g~~~~i~G~nGsGKStll~~l~ 46 (157)
T cd00267 17 NVSLTLKAGEIVALVGPNGSGKSTLLRAIA 46 (157)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 334568899999999999999999996443
No 326
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=91.61 E-value=0.16 Score=52.43 Aligned_cols=31 Identities=26% Similarity=0.527 Sum_probs=25.9
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHHHHh
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~ 252 (558)
+.|.+|++++|+|+.|+|||||+.- +.....
T Consensus 25 l~I~~Ge~~~IvG~nGsGKSTLl~~-L~gl~~ 55 (275)
T cd03289 25 FSISPGQRVGLLGRTGSGKSTLLSA-FLRLLN 55 (275)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHH-HhhhcC
Confidence 6789999999999999999999964 444444
No 327
>PRK06904 replicative DNA helicase; Validated
Probab=91.61 E-value=0.17 Score=56.26 Aligned_cols=68 Identities=25% Similarity=0.208 Sum_probs=51.2
Q ss_pred ceeeeeeeEeeccc-ccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHH
Q 008638 208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMI 278 (558)
Q Consensus 208 e~l~TGIkvID~l~-PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~ 278 (558)
.-+.||++-+|-++ -+.+|+=+.|-|.+|+|||+++..++.|.+..+ +.+|....-|=+.+ ++...|.
T Consensus 202 ~Gi~TG~~~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~-g~~Vl~fSlEMs~~--ql~~Rll 270 (472)
T PRK06904 202 TGVTTGFTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMAS-EKPVLVFSLEMPAE--QIMMRML 270 (472)
T ss_pred CCccCChHHHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhc-CCeEEEEeccCCHH--HHHHHHH
Confidence 34789999999984 688888899999999999999999999887543 45565566664443 3444443
No 328
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=91.60 E-value=0.13 Score=51.10 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=23.3
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+.+|+.++|+|++|+|||||+.-+
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l 51 (237)
T PRK11614 26 LHINQGEIVTLIGANGAGKTTLLGTL 51 (237)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHH
Confidence 67889999999999999999999643
No 329
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=91.60 E-value=0.15 Score=50.97 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=23.7
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-|.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 47 (237)
T TIGR00968 21 LEVPTGSLVALLGPSGSGKSTLLRIIA 47 (237)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 568899999999999999999996443
No 330
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=91.60 E-value=0.11 Score=58.04 Aligned_cols=29 Identities=28% Similarity=0.556 Sum_probs=24.6
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
.=+.+-+|++++|+|++|+|||||+.-+.
T Consensus 354 isl~i~~G~~vaIvG~SGsGKSTLl~lL~ 382 (529)
T TIGR02868 354 VSLDLPPGERVAILGPSGSGKSTLLMLLT 382 (529)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34678899999999999999999995443
No 331
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.60 E-value=0.14 Score=52.22 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=24.0
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.++|+|+.|+|||||+.-+.
T Consensus 44 s~~i~~Ge~~~l~G~nGsGKSTLl~~L~ 71 (269)
T cd03294 44 SLDVREGEIFVIMGLSGSGKSTLLRCIN 71 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3567899999999999999999996443
No 332
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.59 E-value=0.12 Score=52.77 Aligned_cols=41 Identities=22% Similarity=0.408 Sum_probs=29.5
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEE
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVF 260 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~ 260 (558)
=+.+-||.-.+|+||+|+|||||+.-++--.....+.|-|+
T Consensus 28 ~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~ 68 (263)
T COG1127 28 DLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILID 68 (263)
T ss_pred eeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEc
Confidence 46788999999999999999999975543332233344444
No 333
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.57 E-value=0.14 Score=51.40 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=23.2
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+.+|+.++|+|++|+|||||+.-+
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l 52 (253)
T PRK14261 27 ISIPKNRVTALIGPSGCGKSTLLRCF 52 (253)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHH
Confidence 56789999999999999999999644
No 334
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=91.57 E-value=0.14 Score=54.78 Aligned_cols=31 Identities=29% Similarity=0.551 Sum_probs=25.7
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.=+.+.+|+.++|+|++|+|||||+. +|...
T Consensus 25 isl~i~~Ge~~~llGpsGsGKSTLLr-~IaGl 55 (351)
T PRK11432 25 LNLTIKQGTMVTLLGPSGCGKTTVLR-LVAGL 55 (351)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHH-HHHCC
Confidence 44678899999999999999999995 55443
No 335
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=91.57 E-value=0.14 Score=50.64 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=24.3
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.++|.|++|+|||||+.-|.
T Consensus 27 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~ 54 (226)
T cd03234 27 SLHVESGQVMAILGSSGSGKTTLLDAIS 54 (226)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHh
Confidence 4568899999999999999999996444
No 336
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.56 E-value=0.14 Score=52.29 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=24.4
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+-+|+.++|+|++|+|||||+.-+.
T Consensus 33 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 60 (269)
T PRK14259 33 FCDIPRGKVTALIGPSGCGKSTVLRSLN 60 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3678899999999999999999996444
No 337
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=91.55 E-value=0.15 Score=50.15 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=23.1
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+.+|+.++|.|++|+|||||+.-|
T Consensus 26 ~~i~~G~~~~I~G~nGsGKStLl~~l 51 (220)
T TIGR02982 26 LEINPGEIVILTGPSGSGKTTLLTLI 51 (220)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 56779999999999999999999644
No 338
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=91.55 E-value=0.14 Score=52.26 Aligned_cols=31 Identities=26% Similarity=0.523 Sum_probs=25.5
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.=+.+.+|+.++|.|++|+|||||+. +|...
T Consensus 31 vs~~i~~Ge~~~i~G~nGsGKSTLl~-~l~Gl 61 (268)
T PRK10419 31 VSLSLKSGETVALLGRSGCGKSTLAR-LLVGL 61 (268)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHH-HHhCC
Confidence 33678899999999999999999996 44443
No 339
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=91.54 E-value=0.13 Score=54.43 Aligned_cols=28 Identities=25% Similarity=0.507 Sum_probs=24.5
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.|.+|+.++|+|++|+|||||+.-++
T Consensus 36 sl~i~~Ge~~~ivG~sGsGKSTL~~~l~ 63 (330)
T PRK09473 36 NFSLRAGETLGIVGESGSGKSQTAFALM 63 (330)
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHH
Confidence 3678899999999999999999996554
No 340
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.54 E-value=0.15 Score=51.16 Aligned_cols=29 Identities=21% Similarity=0.464 Sum_probs=24.4
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+.+.+|+.++|+|++|+|||||+. ++...
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~-~l~Gl 53 (251)
T PRK14251 25 LDFEEKELTALIGPSGCGKSTFLR-CLNRM 53 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHH-HHhhc
Confidence 567899999999999999999996 44443
No 341
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=91.54 E-value=0.27 Score=47.25 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=31.5
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHh------hcCCEEEEEEecCCchhHHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINNVAK------AHGGFSVFAGVGERTREGNDLYREMIE 279 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n~a~------~~~~v~V~~~iGER~rEv~d~~~e~~e 279 (558)
=..|-||||||||+++..++....+ ...+-.| ..+......+.+++..|.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~i-l~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKI-LVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-E-EEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccc-eeecCCchhHHHHHHHHHh
Confidence 3678999999999999898887621 2223233 3344555666666666654
No 342
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=91.53 E-value=0.14 Score=54.24 Aligned_cols=30 Identities=23% Similarity=0.506 Sum_probs=25.8
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
|.=+.|.+|+.++|+|++|+|||||+.-|+
T Consensus 39 ~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~ 68 (331)
T PRK15079 39 GVTLRLYEGETLGVVGESGCGKSTFARAII 68 (331)
T ss_pred eEEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 445679999999999999999999996544
No 343
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=91.53 E-value=0.14 Score=54.12 Aligned_cols=29 Identities=24% Similarity=0.535 Sum_probs=25.4
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
=+.|.+|+.++|+|++|+|||||+.-++.
T Consensus 27 sl~i~~Ge~~~lvG~sGsGKSTL~~~l~G 55 (326)
T PRK11022 27 SYSVKQGEVVGIVGESGSGKSVSSLAIMG 55 (326)
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHc
Confidence 47899999999999999999999975543
No 344
>PRK10867 signal recognition particle protein; Provisional
Probab=91.52 E-value=1.3 Score=48.98 Aligned_cols=44 Identities=20% Similarity=0.151 Sum_probs=29.0
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEec-CCchhH
Q 008638 227 GKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG-ERTREG 270 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iG-ER~rEv 270 (558)
..+.++|.+|+||||++..++....+.++.-+.++.++ .|+...
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~ 145 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAI 145 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHH
Confidence 36789999999999999999887655422222334444 444433
No 345
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=91.52 E-value=0.14 Score=54.85 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=25.8
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.=+.+.+|+.++|+|++|+|||||+. +|...
T Consensus 23 vsl~i~~Ge~~~llG~sGsGKSTLLr-~iaGl 53 (356)
T PRK11650 23 IDLDVADGEFIVLVGPSGCGKSTLLR-MVAGL 53 (356)
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHH-HHHCC
Confidence 44678899999999999999999996 44443
No 346
>PRK09183 transposase/IS protein; Provisional
Probab=91.52 E-value=0.16 Score=52.01 Aligned_cols=36 Identities=36% Similarity=0.512 Sum_probs=27.7
Q ss_pred cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEE
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVF 260 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~ 260 (558)
+.+|+.+.|+|++|+|||+|+.-+.+.... .+..|.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~--~G~~v~ 134 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVR--AGIKVR 134 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEE
Confidence 788999999999999999999877554332 244553
No 347
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=91.50 E-value=0.14 Score=52.18 Aligned_cols=32 Identities=31% Similarity=0.671 Sum_probs=26.7
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
|.=+.+-+|.++||+|..|+|||||++ +|..+
T Consensus 45 disf~i~~Ge~vGiiG~NGaGKSTLlk-liaGi 76 (249)
T COG1134 45 DISFEIYKGERVGIIGHNGAGKSTLLK-LIAGI 76 (249)
T ss_pred CceEEEeCCCEEEEECCCCCcHHHHHH-HHhCc
Confidence 345679999999999999999999995 55543
No 348
>PRK08840 replicative DNA helicase; Provisional
Probab=91.50 E-value=0.19 Score=55.87 Aligned_cols=59 Identities=22% Similarity=0.131 Sum_probs=47.2
Q ss_pred ceeeeeeeEeeccc-ccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCc
Q 008638 208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267 (558)
Q Consensus 208 e~l~TGIkvID~l~-PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~ 267 (558)
.-+.||+.-+|-++ -+.+|+=+.|-|.+|+|||+++..++.|.+..+ +.+|..+.-|=+
T Consensus 198 ~gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~~-~~~v~~fSlEMs 257 (464)
T PRK08840 198 TGVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQ-DKPVLIFSLEMP 257 (464)
T ss_pred CCcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhC-CCeEEEEeccCC
Confidence 35899999999986 788999999999999999999999999887543 455555555543
No 349
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=91.48 E-value=0.15 Score=51.43 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.7
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 49 (255)
T PRK11231 23 LSLPTGKITALIGPNGCGKSTLLKCFA 49 (255)
T ss_pred eEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 567899999999999999999996443
No 350
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.48 E-value=0.15 Score=51.20 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=24.2
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+.+.+|+.++|+|+.|+|||||+. ++...
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~-~l~G~ 53 (251)
T PRK14270 25 LPIYENKITALIGPSGCGKSTFLR-CLNRM 53 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHH-HHHhc
Confidence 457799999999999999999996 44443
No 351
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=91.47 E-value=0.16 Score=55.46 Aligned_cols=46 Identities=30% Similarity=0.543 Sum_probs=34.8
Q ss_pred eeEeecc-cccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEE
Q 008638 214 IKVVDLL-APYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFA 261 (558)
Q Consensus 214 IkvID~l-~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~ 261 (558)
++++|.+ +.+-+||.+||+|.+|+|||||-+.+++=+ .. .+-..|.
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~-~s-~G~I~F~ 346 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI-PS-QGEIRFD 346 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc-Cc-CceEEEC
Confidence 4777764 789999999999999999999998776543 22 2445554
No 352
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.46 E-value=0.15 Score=51.06 Aligned_cols=28 Identities=21% Similarity=0.436 Sum_probs=24.0
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
+.+.+|+.++|+|++|+|||||+. ++..
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~-~l~G 50 (246)
T PRK14269 23 MQIEQNKITALIGASGCGKSTFLR-CFNR 50 (246)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHH-HHhc
Confidence 667799999999999999999996 4443
No 353
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.46 E-value=0.15 Score=52.23 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=24.1
Q ss_pred cccccccCceeeeecCCCCChhHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
.=+.+.+|+.++|+|+.|+|||||+.-+
T Consensus 39 vs~~i~~Ge~~~IiG~nGsGKSTLl~~l 66 (274)
T PRK14265 39 VHLKIPAKKIIAFIGPSGCGKSTLLRCF 66 (274)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 3366889999999999999999999644
No 354
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=91.46 E-value=0.15 Score=52.29 Aligned_cols=30 Identities=33% Similarity=0.380 Sum_probs=25.1
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
|.=+.+.+|++++|+|+.|+|||||+.-+.
T Consensus 42 ~is~~i~~Ge~~~liG~NGsGKSTLlk~L~ 71 (264)
T PRK13546 42 DISLKAYEGDVIGLVGINGSGKSTLSNIIG 71 (264)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 344568899999999999999999996443
No 355
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.45 E-value=1.1 Score=49.34 Aligned_cols=43 Identities=21% Similarity=0.266 Sum_probs=29.3
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCC
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER 266 (558)
.++.+++|+|+.|+||||++.-+.....+....+.++..=..|
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 4568999999999999999998877654332223333333444
No 356
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=91.43 E-value=0.24 Score=49.87 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=16.8
Q ss_pred eeeeecCCCCChhHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~ 246 (558)
+++|.|++|+|||+++..+
T Consensus 14 ~~liyG~~G~GKtt~a~~~ 32 (220)
T TIGR01618 14 MYLIYGKPGTGKTSTIKYL 32 (220)
T ss_pred EEEEECCCCCCHHHHHHhc
Confidence 6899999999999998654
No 357
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.43 E-value=0.76 Score=52.18 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=24.0
Q ss_pred CCCcEEeecccchhHHH-HHHHHHhhhCCCCCC
Q 008638 326 EGQDVLLFIDNIFRFTQ-ANSEVSALLGRIPSA 357 (558)
Q Consensus 326 ~G~dVLl~~DsltR~a~-A~rEis~~lgr~P~~ 357 (558)
.|+.-++++|+.-++.. |++.+-..+.+||..
T Consensus 117 ~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~ 149 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY 149 (546)
T ss_pred cCCcEEEEEechhhccHHHHHHHHHHHhcCCCC
Confidence 57788999999888776 666676777777644
No 358
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=91.42 E-value=0.15 Score=53.43 Aligned_cols=31 Identities=29% Similarity=0.494 Sum_probs=25.7
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.=+.+.+|+.++|+|++|+|||||+. ++...
T Consensus 26 vsl~i~~Ge~v~iiG~nGsGKSTLl~-~L~Gl 56 (305)
T PRK13651 26 VSVEINQGEFIAIIGQTGSGKTTFIE-HLNAL 56 (305)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHH-HHhCC
Confidence 34678899999999999999999996 44443
No 359
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.42 E-value=0.15 Score=51.01 Aligned_cols=29 Identities=28% Similarity=0.486 Sum_probs=24.6
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+.+.+|+.++|+|++|+|||||+. ++...
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~-~l~Gl 52 (249)
T PRK14253 24 LPIPARQVTALIGPSGCGKSTLLR-CLNRM 52 (249)
T ss_pred EEecCCCEEEEECCCCCCHHHHHH-HHHhh
Confidence 578899999999999999999996 44443
No 360
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.42 E-value=0.15 Score=51.58 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=24.4
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
+.+.+|+.++|+|++|+|||||+.-++.
T Consensus 28 l~i~~Ge~~~l~G~nGsGKSTLlk~l~G 55 (259)
T PRK14260 28 MDIYRNKVTAIIGPSGCGKSTFIKTLNR 55 (259)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 6788999999999999999999965543
No 361
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.41 E-value=0.15 Score=49.29 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=23.6
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+-+|+.++|.|++|+|||||+.-+.
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 54 (192)
T cd03232 28 GYVKPGTLTALMGESGAGKTTLLDVLA 54 (192)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence 567899999999999999999996443
No 362
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=91.39 E-value=0.16 Score=50.46 Aligned_cols=26 Identities=42% Similarity=0.696 Sum_probs=23.2
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+-+|+.++|.|++|+|||||+.-+
T Consensus 43 ~~i~~Ge~~~i~G~nGsGKSTLl~~l 68 (224)
T cd03220 43 FEVPRGERIGLIGRNGAGKSTLLRLL 68 (224)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 56889999999999999999999644
No 363
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=91.38 E-value=0.15 Score=51.62 Aligned_cols=29 Identities=24% Similarity=0.519 Sum_probs=24.2
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+.+.+|+.++|+|++|+|||||+. +|...
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~-~i~G~ 53 (262)
T PRK09984 25 LNIHHGEMVALLGPSGSGKSTLLR-HLSGL 53 (262)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHH-HHhcc
Confidence 557799999999999999999996 44443
No 364
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.37 E-value=0.17 Score=49.51 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=25.9
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
|.=+.+.+ +.++|+|++|+|||||+.-+.
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~ 44 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIA 44 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHh
Confidence 88889999 999999999999999996443
No 365
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=91.36 E-value=0.16 Score=51.72 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=23.5
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+-+|+.++|+|++|+|||||+.-+.
T Consensus 40 l~i~~Ge~~~i~G~nGsGKSTLl~~l~ 66 (267)
T PRK14235 40 LDIPEKTVTAFIGPSGCGKSTFLRCLN 66 (267)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 567899999999999999999996443
No 366
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.36 E-value=0.17 Score=52.13 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=26.9
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHHHHhhcCC
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 256 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~ 256 (558)
+.+-+|+.++|+|+.|+|||||+. +|....+...+
T Consensus 28 l~i~~Ge~~~i~G~nGaGKSTLl~-~i~G~~~p~~G 62 (279)
T PRK13635 28 FSVYEGEWVAIVGHNGSGKSTLAK-LLNGLLLPEAG 62 (279)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHH-HHhcCCCCCCc
Confidence 667899999999999999999996 44444333334
No 367
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.35 E-value=0.15 Score=52.53 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=25.1
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
|.=+.|.+|+.++|+|++|+|||||+.-+.
T Consensus 57 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~ 86 (286)
T PRK14275 57 KVNADILSKYVTAIIGPSGCGKSTFLRAIN 86 (286)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 344678899999999999999999996443
No 368
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=91.32 E-value=0.14 Score=51.24 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=24.2
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
+.+.+|+.++|+|++|+|||||+. +|..
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~-~i~G 55 (252)
T CHL00131 28 LSINKGEIHAIMGPNGSGKSTLSK-VIAG 55 (252)
T ss_pred eEEcCCcEEEEECCCCCCHHHHHH-HHcC
Confidence 567899999999999999999996 4444
No 369
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.32 E-value=0.16 Score=51.04 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=23.1
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+.+|+..+|+|++|+|||||+.-+
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~l 50 (251)
T PRK14249 25 MDFPERQITAIIGPSGCGKSTLLRAL 50 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 46789999999999999999999644
No 370
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=91.31 E-value=0.16 Score=51.43 Aligned_cols=27 Identities=33% Similarity=0.615 Sum_probs=23.6
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|+.|+|||||+.-+.
T Consensus 42 l~i~~Ge~~~i~G~nGsGKSTLl~~l~ 68 (257)
T cd03288 42 AYIKPGQKVGICGRTGSGKSSLSLAFF 68 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 567899999999999999999996443
No 371
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=91.29 E-value=0.16 Score=51.20 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=23.5
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 52 (257)
T PRK10619 26 LQANAGDVISIIGSSGSGKSTFLRCIN 52 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 567799999999999999999996443
No 372
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=91.29 E-value=0.16 Score=54.41 Aligned_cols=31 Identities=29% Similarity=0.553 Sum_probs=25.5
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.=+.+..|+.++|+|++|+|||||+. +|...
T Consensus 23 vs~~i~~Ge~~~l~GpsGsGKSTLLr-~iaGl 53 (353)
T TIGR03265 23 ISLSVKKGEFVCLLGPSGCGKTTLLR-IIAGL 53 (353)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHH-HHHCC
Confidence 44667899999999999999999995 44443
No 373
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=91.27 E-value=0.15 Score=52.31 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=23.7
Q ss_pred ccccccCceeeeecCCCCChhHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
=+.|.+|+.++|+|++|+|||||+.-+
T Consensus 21 sl~i~~Ge~~~l~G~nGsGKSTLl~~l 47 (272)
T PRK13547 21 SLRIEPGRVTALLGRNGAGKSTLLKAL 47 (272)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 357889999999999999999999644
No 374
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=91.26 E-value=0.28 Score=45.65 Aligned_cols=52 Identities=27% Similarity=0.390 Sum_probs=34.0
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecC----CchhHHHHHHHHHHhc
Q 008638 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE----RTREGNDLYREMIESG 281 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGE----R~rEv~d~~~e~~e~~ 281 (558)
+++|+|+.++|||||+..+++...+..-.+.++.=.+. -..++.|-++- ++|
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g~~~~d~pG~Dt~r~--~aG 57 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDHGQFEIDPPGTDTWRF--KAG 57 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-STTSTTCSTTCHHHHHH--HCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccCCCcccCCCCcccccc--ccc
Confidence 57899999999999999999887654223444433333 23566676663 555
No 375
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=91.22 E-value=0.99 Score=42.07 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=19.3
Q ss_pred eeeecCCCCChhHHHHHHHHHHH
Q 008638 229 IGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
+.|.|.+|+|||+|+..+.....
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 57899999999999988876543
No 376
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=91.22 E-value=0.16 Score=52.86 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=23.8
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|+.|+|||||+.-|.
T Consensus 23 ~~i~~Gei~~l~G~NGaGKTTLl~~l~ 49 (301)
T TIGR03522 23 FEAQKGRIVGFLGPNGAGKSTTMKIIT 49 (301)
T ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHh
Confidence 568899999999999999999996443
No 377
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=91.20 E-value=0.16 Score=51.65 Aligned_cols=32 Identities=22% Similarity=0.472 Sum_probs=25.8
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
|.=+.+.+|+.++|+|++|+|||||+. ++...
T Consensus 31 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~-~l~Gl 62 (267)
T PRK15112 31 PLSFTLREGQTLAIIGENGSGKSTLAK-MLAGM 62 (267)
T ss_pred eeeEEecCCCEEEEEcCCCCCHHHHHH-HHhCC
Confidence 334668899999999999999999996 44443
No 378
>PTZ00301 uridine kinase; Provisional
Probab=91.19 E-value=0.27 Score=48.97 Aligned_cols=22 Identities=32% Similarity=0.708 Sum_probs=19.2
Q ss_pred eeeecCCCCChhHHHHHHHHHH
Q 008638 229 IGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+||-|++|+|||||++.+....
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHH
Confidence 7999999999999998776554
No 379
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.19 E-value=0.16 Score=51.98 Aligned_cols=33 Identities=30% Similarity=0.581 Sum_probs=26.5
Q ss_pred eEeecccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 215 KVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 215 kvID~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+-|+ +.+.+|+.++|+|++|+|||||+. ++...
T Consensus 22 ~~is--l~i~~Ge~~~i~G~nGsGKSTLl~-~l~Gl 54 (274)
T PRK13647 22 KGLS--LSIPEGSKTALLGPNGAGKSTLLL-HLNGI 54 (274)
T ss_pred eeEE--EEEcCCCEEEEECCCCCcHHHHHH-HHhcC
Confidence 4444 578899999999999999999996 44443
No 380
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.19 E-value=0.16 Score=52.41 Aligned_cols=31 Identities=35% Similarity=0.594 Sum_probs=25.4
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHHHHh
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~ 252 (558)
+.+.+|+.++|+|++|+|||||+. ++....+
T Consensus 28 ~~i~~Ge~~~i~G~nGaGKSTLl~-~l~Gl~~ 58 (287)
T PRK13637 28 IEIEDGEFVGLIGHTGSGKSTLIQ-HLNGLLK 58 (287)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHH-HHhcCCC
Confidence 678899999999999999999996 4444433
No 381
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=91.19 E-value=0.18 Score=56.88 Aligned_cols=120 Identities=18% Similarity=0.236 Sum_probs=67.2
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEE-----------------EEEecCCchhH----------
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSV-----------------FAGVGERTREG---------- 270 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V-----------------~~~iGER~rEv---------- 270 (558)
|+=+.+-+|+++.|+|.+|+|||||+. ++....+...+-.- ..+||+++-=.
T Consensus 339 ~l~~t~~~g~~talvG~SGaGKSTLl~-lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l 417 (559)
T COG4988 339 DLNLTIKAGQLTALVGASGAGKSTLLN-LLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILL 417 (559)
T ss_pred CceeEecCCcEEEEECCCCCCHHHHHH-HHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhc
Confidence 556788999999999999999999995 54444442222111 23444443111
Q ss_pred -------HHHHHHHHHhcccccCc-ccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHH
Q 008638 271 -------NDLYREMIESGVIKLGD-KQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342 (558)
Q Consensus 271 -------~d~~~e~~e~~~~~~~~-~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~ 342 (558)
.++++-+.+.++.+.-. +... .+.+=-+..+-|.|.+-|.+ +|..|-+ + --++++|.-|-+-+
T Consensus 418 ~~~~~s~e~i~~al~~a~l~~~v~~p~GL-dt~ige~G~~LSgGQ~QRla-----LARAll~-~--~~l~llDEpTA~LD 488 (559)
T COG4988 418 ARPDASDEEIIAALDQAGLLEFVPKPDGL-DTVIGEGGAGLSGGQAQRLA-----LARALLS-P--ASLLLLDEPTAHLD 488 (559)
T ss_pred cCCcCCHHHHHHHHHHhcHHHhhcCCCcc-cchhccCCCCCCHHHHHHHH-----HHHHhcC-C--CCEEEecCCccCCC
Confidence 22223333333222111 1111 24444455667778777754 4555554 2 34566788887777
Q ss_pred HHHHH
Q 008638 343 ANSEV 347 (558)
Q Consensus 343 A~rEi 347 (558)
+.+|-
T Consensus 489 ~etE~ 493 (559)
T COG4988 489 AETEQ 493 (559)
T ss_pred HhHHH
Confidence 77763
No 382
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.18 E-value=0.17 Score=52.33 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=23.6
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 60 ~~i~~Ge~~~I~G~nGsGKSTLl~~l~ 86 (285)
T PRK14254 60 MDIPENQVTAMIGPSGCGKSTFLRCIN 86 (285)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 567899999999999999999996443
No 383
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=91.17 E-value=0.16 Score=52.55 Aligned_cols=30 Identities=27% Similarity=0.563 Sum_probs=24.9
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
|.=+.+.+|++++|+|+.|+|||||+.-|.
T Consensus 55 ~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~ 84 (282)
T cd03291 55 NINLKIEKGEMLAITGSTGSGKTSLLMLIL 84 (282)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 344567899999999999999999996443
No 384
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.15 E-value=0.17 Score=52.84 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=24.9
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
.=+.+.+|+.++|+|+.|+|||||+.-|.
T Consensus 64 is~~i~~Ge~~~IvG~nGsGKSTLl~~L~ 92 (305)
T PRK14264 64 VSMDIPEKSVTALIGPSGCGKSTFLRCLN 92 (305)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34668899999999999999999996554
No 385
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.10 E-value=0.17 Score=46.92 Aligned_cols=26 Identities=35% Similarity=0.652 Sum_probs=22.7
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+-+|+.++|+|++|+|||||+.-+
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l 46 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLI 46 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHH
Confidence 46779999999999999999999644
No 386
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.07 E-value=0.17 Score=51.85 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=24.3
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.++|+|+.|+|||||+.-|.
T Consensus 22 sl~i~~Ge~~~l~G~nGsGKSTLl~~i~ 49 (275)
T PRK13639 22 NFKAEKGEMVALLGPNGAGKSTLFLHFN 49 (275)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3678899999999999999999996443
No 387
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.07 E-value=0.18 Score=53.10 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=25.5
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHHHHh
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~ 252 (558)
+.+.+|+.++|+|++|+|||||+. ++....+
T Consensus 47 l~i~~Ge~~~I~G~nGsGKSTLl~-~L~Gl~~ 77 (320)
T PRK13631 47 YTFEKNKIYFIIGNSGSGKSTLVT-HFNGLIK 77 (320)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHH-HHhCCCC
Confidence 678899999999999999999996 4444433
No 388
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=91.06 E-value=0.18 Score=49.47 Aligned_cols=27 Identities=33% Similarity=0.695 Sum_probs=23.6
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|+.|+|||||+.-+.
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 51 (221)
T cd03244 25 FSIKPGEKVGIVGRTGSGKSSLLLALF 51 (221)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHH
Confidence 567899999999999999999996443
No 389
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=91.06 E-value=0.12 Score=53.77 Aligned_cols=55 Identities=25% Similarity=0.346 Sum_probs=39.9
Q ss_pred eEeecccccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchh
Q 008638 215 KVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTRE 269 (558)
Q Consensus 215 kvID~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rE 269 (558)
-|-|.-+-|.+|+++|++|+.|+||||++.++.--..-.++-|.|-..+.-|.+|
T Consensus 39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~ 93 (325)
T COG4586 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRRE 93 (325)
T ss_pred hhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHH
Confidence 6778899999999999999999999999976542221122334566666666444
No 390
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.05 E-value=0.18 Score=51.25 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=25.6
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
|+=+.+-+|++++|+|++|+|||||+. ++...
T Consensus 34 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~-~l~Gl 65 (265)
T PRK14252 34 NINMMVHEKQVTALIGPSGCGKSTFLR-CFNRM 65 (265)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHH-HHhcc
Confidence 344567899999999999999999996 44443
No 391
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.05 E-value=0.17 Score=52.05 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.4
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|+.|+|||||+.-|.
T Consensus 28 l~i~~Ge~~~I~G~nGaGKSTLl~~l~ 54 (282)
T PRK13640 28 FSIPRGSWTALIGHNGSGKSTISKLIN 54 (282)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 467799999999999999999996443
No 392
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=91.04 E-value=0.36 Score=49.98 Aligned_cols=30 Identities=37% Similarity=0.606 Sum_probs=26.1
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHHHhh
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~a~~ 253 (558)
.+|+.++|+|+.|+||||++..++...+..
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 478899999999999999999988876554
No 393
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=91.03 E-value=0.63 Score=49.27 Aligned_cols=91 Identities=20% Similarity=0.136 Sum_probs=54.1
Q ss_pred CceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPP 305 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~ 305 (558)
++++.|+|++|+|||||+..+.... +..+ +-|.+||..+ +.. . . ... -+
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~-----~~~~---v~E~~R~~~~---~~~----~---~-----~~~--------l~ 210 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVF-----NTTS---AWEYAREYVE---EKL----G---G-----DEA--------LQ 210 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh-----CCCE---EeehhHHHHH---Hhc----C---C-----Ccc--------cC
Confidence 6799999999999999998776431 1222 5565665422 210 0 0 001 01
Q ss_pred HHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHHHHHHH
Q 008638 306 GARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVS 348 (558)
Q Consensus 306 ~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A~rEis 348 (558)
...+.-...+-..+++-+- +..|-++|+|-=.--+.+|.+..
T Consensus 211 ~~d~~~i~~g~~~~~~~~~-~~a~~iif~D~~~~~t~~y~~~~ 252 (325)
T TIGR01526 211 YSDYAQIALGQQRYIDYAV-RHAHKIAFIDTDFITTQVFAKQY 252 (325)
T ss_pred HHHHHHHHHHHHHHHHHHH-hhcCCeEEEcCChHHHHHHHHHH
Confidence 1113344445555566564 45678999998777777777765
No 394
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=91.03 E-value=1 Score=49.09 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=21.4
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
..+-+++.|++|+|||+++..++...
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 35568899999999999998776654
No 395
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=91.01 E-value=0.27 Score=49.10 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=18.5
Q ss_pred eeeecCCCCChhHHHHHHHHHH
Q 008638 229 IGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+||.|++|+|||||+..+....
T Consensus 2 igI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHH
Confidence 6899999999999997666543
No 396
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=91.01 E-value=0.21 Score=53.35 Aligned_cols=29 Identities=34% Similarity=0.468 Sum_probs=25.8
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
|.=+.+.+|+.++|+|++|+|||||+.-|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~i 43 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLI 43 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 66678999999999999999999999644
No 397
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.00 E-value=0.18 Score=51.76 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=24.3
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+-+|+.++|.|+.|+|||||+.-|.
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (274)
T PRK13644 22 NLVIKKGEYIGIIGKNGSGKSTLALHLN 49 (274)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence 3678899999999999999999996444
No 398
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.95 E-value=0.36 Score=54.00 Aligned_cols=37 Identities=38% Similarity=0.593 Sum_probs=28.9
Q ss_pred cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEE
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSV 259 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V 259 (558)
+.+|+-++++|+.|+||||++..+.......++...|
T Consensus 253 ~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV 289 (484)
T PRK06995 253 LDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKV 289 (484)
T ss_pred ccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeE
Confidence 5689999999999999999999888765444433333
No 399
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=90.94 E-value=0.32 Score=50.72 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=26.6
Q ss_pred ccccCceeeeecCCCCChhHHHHHHHHHHHh
Q 008638 222 PYQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (558)
Q Consensus 222 PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~ 252 (558)
..+++..++|.|++|+|||||+..+.....+
T Consensus 30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~ 60 (300)
T TIGR00750 30 YTGNAHRVGITGTPGAGKSTLLEALGMELRR 60 (300)
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999888876544
No 400
>PRK05636 replicative DNA helicase; Provisional
Probab=90.92 E-value=0.33 Score=54.53 Aligned_cols=59 Identities=24% Similarity=0.263 Sum_probs=45.6
Q ss_pred ceeeeeeeEeecccc-cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCc
Q 008638 208 QILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267 (558)
Q Consensus 208 e~l~TGIkvID~l~P-igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~ 267 (558)
.-+.||+.-+|-++- +.+|+=+.|-|.+|+|||+++.+++.+.+..+ +..|.....|=+
T Consensus 246 ~Gi~TG~~~LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~-g~~v~~fSlEMs 305 (505)
T PRK05636 246 TGIPTGFKDLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKH-NKASVIFSLEMS 305 (505)
T ss_pred CceecChHHHhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEEeeCC
Confidence 458999999999864 77888889999999999999999998877544 334444455544
No 401
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.91 E-value=0.19 Score=50.14 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=23.3
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.|.+|++++|.|+.|+|||||+.-+
T Consensus 20 ~~i~~Ge~~~i~G~nG~GKStLl~~l 45 (235)
T cd03299 20 LEVERGDYFVILGPTGSGKSVLLETI 45 (235)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHH
Confidence 67789999999999999999999644
No 402
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=90.89 E-value=0.19 Score=56.59 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=24.6
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
=+.+-+|++++|+|++|+|||||+. ++...
T Consensus 363 ~l~i~~G~~~aIvG~sGsGKSTLl~-ll~gl 392 (582)
T PRK11176 363 NFKIPAGKTVALVGRSGSGKSTIAN-LLTRF 392 (582)
T ss_pred eEEeCCCCEEEEECCCCCCHHHHHH-HHHhc
Confidence 3457799999999999999999995 44443
No 403
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.82 E-value=0.33 Score=51.32 Aligned_cols=47 Identities=26% Similarity=0.492 Sum_probs=35.4
Q ss_pred eeeEee-cccccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEE
Q 008638 213 GIKVVD-LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVF 260 (558)
Q Consensus 213 GIkvID-~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~ 260 (558)
.+.++| .=+.|-+|+..||+|.+|.|||||+ .+||..-+-..+-..+
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLi-R~iN~Le~PtsG~v~v 65 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLL-RLINLLERPTSGSVFV 65 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHH-HHHhccCCCCCceEEE
Confidence 356666 7788999999999999999999999 5777654433343333
No 404
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=90.81 E-value=0.18 Score=50.86 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=24.2
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+.+.+|+.++|+|+.|+|||||+.- |...
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~-i~G~ 50 (256)
T TIGR03873 22 VTAPPGSLTGLLGPNGSGKSTLLRL-LAGA 50 (256)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHH-HcCC
Confidence 5677999999999999999999964 4443
No 405
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=90.78 E-value=0.19 Score=53.57 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=24.4
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|+.+||+|+.|+|||||+.-|.
T Consensus 61 s~~i~~Gei~gLlGpNGaGKSTLl~~L~ 88 (340)
T PRK13536 61 SFTVASGECFGLLGPNGAGKSTIARMIL 88 (340)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 3678999999999999999999996443
No 406
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=90.77 E-value=0.55 Score=46.83 Aligned_cols=47 Identities=30% Similarity=0.478 Sum_probs=32.6
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIE 279 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e 279 (558)
..+-|+|++|+|||.|++.+.+...+.+++..|+-.-. .+|.+++.+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~------~~f~~~~~~ 81 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA------EEFIREFAD 81 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH------HHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH------HHHHHHHHH
Confidence 35789999999999999988887766666655543332 345555543
No 407
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=90.76 E-value=0.15 Score=52.30 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=23.5
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.|.+|+.++|+|+.|+|||||+.-+.
T Consensus 31 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 57 (280)
T PRK13633 31 LEVKKGEFLVILGRNGSGKSTIAKHMN 57 (280)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 567799999999999999999996444
No 408
>PRK03846 adenylylsulfate kinase; Provisional
Probab=90.76 E-value=0.81 Score=44.47 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=22.6
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.+|..+.|.|.+|+|||||+..+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 367789999999999999998776654
No 409
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=90.76 E-value=0.19 Score=51.26 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=23.2
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+.+|+.++|+|++|+|||||+.-+
T Consensus 46 ~~i~~Ge~~~I~G~nGsGKSTLl~~l 71 (272)
T PRK14236 46 MRIPKNRVTAFIGPSGCGKSTLLRCF 71 (272)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 56779999999999999999999644
No 410
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=90.73 E-value=0.4 Score=56.17 Aligned_cols=27 Identities=33% Similarity=0.398 Sum_probs=22.3
Q ss_pred CceeeeecCCCCChhHHHHHHHHHHHh
Q 008638 226 GGKIGLFGGAGVGKTVLIMELINNVAK 252 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~n~a~ 252 (558)
..-+.++|++|||||+|+..++...+.
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 346789999999999999888777644
No 411
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=90.72 E-value=0.19 Score=52.60 Aligned_cols=31 Identities=35% Similarity=0.489 Sum_probs=25.4
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHHHHh
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~ 252 (558)
+.+.+|+.+||.|+.|+|||||+.-| ....+
T Consensus 28 l~i~~Gei~gllGpNGaGKSTLl~~l-~Gl~~ 58 (306)
T PRK13537 28 FHVQRGECFGLLGPNGAGKTTTLRML-LGLTH 58 (306)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHH-hcCCC
Confidence 66889999999999999999999644 44433
No 412
>PRK00300 gmk guanylate kinase; Provisional
Probab=90.70 E-value=0.21 Score=48.29 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=22.5
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
-+|+-++|.|++|+|||+|+..++..
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999999877653
No 413
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=90.69 E-value=1.1 Score=47.83 Aligned_cols=86 Identities=28% Similarity=0.436 Sum_probs=54.3
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEe-cCCCCHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYG-QMNEPPG 306 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~-t~~ep~~ 306 (558)
-++++|-.|+||||-+.-+++...+. +.+|+.+-|.--|-+. +..|...+ . .-.+-+|.. .-.+|+.
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~--g~~VllaA~DTFRAaA--iEQL~~w~-----e---r~gv~vI~~~~G~DpAa 208 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQ--GKSVLLAAGDTFRAAA--IEQLEVWG-----E---RLGVPVISGKEGADPAA 208 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHC--CCeEEEEecchHHHHH--HHHHHHHH-----H---HhCCeEEccCCCCCcHH
Confidence 47899999999999999998876543 6777766666555542 23333321 0 012344553 3456644
Q ss_pred HHHHHHHHHHHHHHHhHHhCCCcEEee
Q 008638 307 ARARVGLTGLTVAEHFRDAEGQDVLLF 333 (558)
Q Consensus 307 ~r~~~~~ta~tiAEyfRd~~G~dVLl~ 333 (558)
++|=|+..|. .+|.||||+
T Consensus 209 ----VafDAi~~Ak----ar~~Dvvli 227 (340)
T COG0552 209 ----VAFDAIQAAK----ARGIDVVLI 227 (340)
T ss_pred ----HHHHHHHHHH----HcCCCEEEE
Confidence 5666666555 379998875
No 414
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=90.67 E-value=0.18 Score=50.35 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=23.9
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
+.+.+|+.++|.|+.|+|||||+. ++..
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~-~l~G 49 (248)
T PRK09580 22 LEVRPGEVHAIMGPNGSGKSTLSA-TLAG 49 (248)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHH-HHcC
Confidence 557899999999999999999996 4443
No 415
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=90.63 E-value=0.19 Score=54.02 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=25.3
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.=+.+.+|+.++|+|++|+|||||+. +|...
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLL~-~iaGl 52 (369)
T PRK11000 22 INLDIHEGEFVVFVGPSGCGKSTLLR-MIAGL 52 (369)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHH-HHhCC
Confidence 33578899999999999999999996 44443
No 416
>PRK06526 transposase; Provisional
Probab=90.60 E-value=0.32 Score=49.80 Aligned_cols=47 Identities=21% Similarity=0.286 Sum_probs=32.5
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMI 278 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~ 278 (558)
-+++.+.|.|++|+|||.|+..+.+..++. ++.|+. -...++..++.
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~--g~~v~f------~t~~~l~~~l~ 142 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQA--GHRVLF------ATAAQWVARLA 142 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHC--CCchhh------hhHHHHHHHHH
Confidence 367889999999999999999887765432 445432 12345555553
No 417
>PRK05541 adenylylsulfate kinase; Provisional
Probab=90.59 E-value=0.42 Score=45.26 Aligned_cols=30 Identities=30% Similarity=0.291 Sum_probs=25.8
Q ss_pred ccccCceeeeecCCCCChhHHHHHHHHHHH
Q 008638 222 PYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 222 PigkGqr~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
+.-+|.-+.|.|.+|+||||++..+.....
T Consensus 3 ~~~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 3 MKPNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 466888999999999999999988877654
No 418
>PRK08727 hypothetical protein; Validated
Probab=90.59 E-value=2.8 Score=42.07 Aligned_cols=37 Identities=30% Similarity=0.345 Sum_probs=25.9
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecC
Q 008638 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGE 265 (558)
-+.|.|++|+|||.|++-+.+...+ ++--.+|+-..+
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~-~~~~~~y~~~~~ 79 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQ-AGRSSAYLPLQA 79 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEEeHHH
Confidence 4899999999999999877765433 222345655444
No 419
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.59 E-value=0.21 Score=50.86 Aligned_cols=29 Identities=24% Similarity=0.547 Sum_probs=24.6
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
=+.+.+|+.++|+|+.|+|||||+. ++..
T Consensus 28 s~~i~~Ge~~~i~G~nGsGKSTLl~-~l~G 56 (261)
T PRK14263 28 HVPIRKNEITGFIGPSGCGKSTVLR-SLNR 56 (261)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHH-HHHc
Confidence 4668899999999999999999996 4443
No 420
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=90.56 E-value=0.19 Score=47.49 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=20.4
Q ss_pred CceeeeecCCCCChhHHHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
|..+.|.|++|+|||||+..++.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHc
Confidence 67899999999999999987764
No 421
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=90.55 E-value=0.59 Score=49.09 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=19.2
Q ss_pred ceeeeecCCCCChhHHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n 249 (558)
..+.|.|++|+|||+|+..+.+.
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHH
Confidence 46899999999999999866544
No 422
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.55 E-value=0.2 Score=51.80 Aligned_cols=27 Identities=26% Similarity=0.517 Sum_probs=23.8
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.|.+|+.++|+|+.|+|||||+.-+.
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (290)
T PRK13634 28 VSIPSGSYVAIIGHTGSGKSTLLQHLN 54 (290)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 678899999999999999999996443
No 423
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=90.47 E-value=0.2 Score=49.02 Aligned_cols=24 Identities=38% Similarity=0.648 Sum_probs=20.8
Q ss_pred cCceeeeecCCCCChhHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
+|..++|.|++|+|||||+..+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 678899999999999999976654
No 424
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=90.47 E-value=0.81 Score=49.75 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=17.0
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
-+||.||+|||||.++.-+++
T Consensus 150 gllL~GPPGcGKTllAraiA~ 170 (413)
T PLN00020 150 ILGIWGGKGQGKSFQCELVFK 170 (413)
T ss_pred EEEeeCCCCCCHHHHHHHHHH
Confidence 368999999999999964443
No 425
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=90.47 E-value=0.37 Score=46.57 Aligned_cols=47 Identities=34% Similarity=0.632 Sum_probs=31.9
Q ss_pred cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEE-EEEecCCchhHHHHHHHHH
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSV-FAGVGERTREGNDLYREMI 278 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V-~~~iGER~rEv~d~~~e~~ 278 (558)
+.+|+-+.|+|++|+|||.|+..+++...+ + +++| |+ ...+++.++.
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~-~-g~~v~f~-------~~~~L~~~l~ 91 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIR-K-GYSVLFI-------TASDLLDELK 91 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHH-T-T--EEEE-------EHHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhcc-C-CcceeEe-------ecCceecccc
Confidence 457888999999999999999988877655 2 5554 43 2466777764
No 426
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=90.46 E-value=0.2 Score=54.11 Aligned_cols=32 Identities=31% Similarity=0.498 Sum_probs=26.2
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
|.=+.+.+|+.++|+|++|+|||||+. +|...
T Consensus 32 ~vsl~i~~Ge~~~LlGpsGsGKSTLLr-~IaGl 63 (375)
T PRK09452 32 NLDLTINNGEFLTLLGPSGCGKTTVLR-LIAGF 63 (375)
T ss_pred eeEEEEeCCCEEEEECCCCCcHHHHHH-HHhCC
Confidence 345778999999999999999999995 44433
No 427
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=90.44 E-value=0.21 Score=53.16 Aligned_cols=30 Identities=33% Similarity=0.510 Sum_probs=25.0
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
=+.+-+|+.++|+|++|+|||||+. ++...
T Consensus 25 sl~i~~Gei~~iiG~nGsGKSTLlk-~L~Gl 54 (343)
T PRK11153 25 SLHIPAGEIFGVIGASGAGKSTLIR-CINLL 54 (343)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHH-HHhCC
Confidence 3577899999999999999999996 44443
No 428
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=90.41 E-value=0.22 Score=47.77 Aligned_cols=25 Identities=40% Similarity=0.619 Sum_probs=20.8
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHh
Q 008638 228 KIGLFGGAGVGKTVLIMELINNVAK 252 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n~a~ 252 (558)
++.|-|++|+|||||+..++....+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhc
Confidence 5789999999999999999877643
No 429
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.41 E-value=0.22 Score=51.11 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=23.7
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|+.++|+|+.|+|||||+.-|.
T Consensus 25 l~i~~Ge~~~i~G~NGsGKSTLl~~l~ 51 (277)
T PRK13652 25 FIAPRNSRIAVIGPNGAGKSTLFRHFN 51 (277)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 678899999999999999999996443
No 430
>PRK06321 replicative DNA helicase; Provisional
Probab=90.40 E-value=0.34 Score=54.03 Aligned_cols=60 Identities=18% Similarity=0.107 Sum_probs=46.3
Q ss_pred ceeeeeeeEeecccc-cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCch
Q 008638 208 QILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTR 268 (558)
Q Consensus 208 e~l~TGIkvID~l~P-igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~r 268 (558)
.-+.||+.-+|-++- +-+|+=+.|-|.+|+|||+++.+++.|.+..+ +..|....-|=+.
T Consensus 207 ~Gi~tG~~~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~-g~~v~~fSLEMs~ 267 (472)
T PRK06321 207 SGIPTHFIDLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQN-RLPVGIFSLEMTV 267 (472)
T ss_pred CccccCcHHHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhc-CCeEEEEeccCCH
Confidence 347899999999874 88899999999999999999999999887543 3444444555433
No 431
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.40 E-value=0.21 Score=50.71 Aligned_cols=28 Identities=25% Similarity=0.546 Sum_probs=24.1
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
+.+.+|+.++|+|++|+|||||+. +|..
T Consensus 31 ~~i~~Ge~~~i~G~nGsGKSTLl~-~iaG 58 (257)
T PRK14246 31 IKIPNNSIFGIMGPSGSGKSTLLK-VLNR 58 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHH-HHhC
Confidence 568899999999999999999996 4443
No 432
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=90.39 E-value=0.24 Score=46.96 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=20.4
Q ss_pred CceeeeecCCCCChhHHHHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
|+.+.|.|++|+|||||+..+...
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999999876554
No 433
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.35 E-value=0.74 Score=54.94 Aligned_cols=32 Identities=16% Similarity=0.282 Sum_probs=27.4
Q ss_pred CCCcEEeecccchhHHH-HHHHHHhhhCCCCCC
Q 008638 326 EGQDVLLFIDNIFRFTQ-ANSEVSALLGRIPSA 357 (558)
Q Consensus 326 ~G~dVLl~~DsltR~a~-A~rEis~~lgr~P~~ 357 (558)
.|+..++|+|..-++.. |++.+=..+.+||..
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~ 149 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEH 149 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCC
Confidence 58999999999999964 888888888888875
No 434
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=90.33 E-value=0.2 Score=53.91 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=26.3
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHHHHHHh
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~ 252 (558)
.=+.+.+|+.++|+|++|+|||||+. +++...+
T Consensus 12 vs~~i~~Gei~~l~G~sGsGKSTLLr-~L~Gl~~ 44 (363)
T TIGR01186 12 ADLAIAKGEIFVIMGLSGSGKSTTVR-MLNRLIE 44 (363)
T ss_pred eEEEEcCCCEEEEECCCCChHHHHHH-HHhCCCC
Confidence 33678899999999999999999996 4444333
No 435
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=90.32 E-value=0.32 Score=48.82 Aligned_cols=47 Identities=30% Similarity=0.472 Sum_probs=34.1
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecC
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGE 265 (558)
|.-+..-+|+=.||+|+.|+||||++. ||...-.-..+...+.++.-
T Consensus 20 dVSF~ae~Gei~GlLG~NGAGKTT~LR-miatlL~P~~G~v~idg~d~ 66 (245)
T COG4555 20 DVSFEAEEGEITGLLGENGAGKTTLLR-MIATLLIPDSGKVTIDGVDT 66 (245)
T ss_pred heeEEeccceEEEEEcCCCCCchhHHH-HHHHhccCCCceEEEeeccc
Confidence 666788999999999999999999996 54444333334445555553
No 436
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=90.32 E-value=0.47 Score=56.59 Aligned_cols=26 Identities=38% Similarity=0.440 Sum_probs=21.4
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHHh
Q 008638 227 GKIGLFGGAGVGKTVLIMELINNVAK 252 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n~a~ 252 (558)
.-..|+|++|||||+|+..++..+..
T Consensus 209 ~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred CceeEECCCCCCHHHHHHHHHHHHhh
Confidence 46679999999999999888776643
No 437
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.31 E-value=0.21 Score=48.94 Aligned_cols=23 Identities=30% Similarity=0.650 Sum_probs=21.4
Q ss_pred ccccCceeeeecCCCCChhHHHH
Q 008638 222 PYQRGGKIGLFGGAGVGKTVLIM 244 (558)
Q Consensus 222 PigkGqr~gIfGg~g~GKT~L~~ 244 (558)
-+-+|++++|+|++|+|||||++
T Consensus 32 ~v~~Ge~vaiVG~SGSGKSTLl~ 54 (228)
T COG4181 32 VVKRGETVAIVGPSGSGKSTLLA 54 (228)
T ss_pred EecCCceEEEEcCCCCcHHhHHH
Confidence 47899999999999999999996
No 438
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=90.29 E-value=0.22 Score=56.08 Aligned_cols=48 Identities=29% Similarity=0.533 Sum_probs=35.6
Q ss_pred eeEeec-ccccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEE
Q 008638 214 IKVVDL-LAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG 262 (558)
Q Consensus 214 IkvID~-l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~ 262 (558)
++++|- =+-+-+|...||+|.+|+|||||+. ++.....-..+..+|.+
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar-~i~gL~~P~~G~i~~~g 352 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLAR-ILAGLLPPSSGSIIFDG 352 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHH-HHhCCCCCCCceEEEeC
Confidence 566654 4789999999999999999999996 44444443445666654
No 439
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.27 E-value=0.22 Score=50.46 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=24.6
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+.+-+|+.++|+|+.|+|||||+. ++...
T Consensus 28 ~~i~~Ge~~~I~G~nGsGKSTLl~-~l~Gl 56 (261)
T PRK14258 28 MEIYQSKVTAIIGPSGCGKSTFLK-CLNRM 56 (261)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHH-HHhcc
Confidence 668899999999999999999996 44443
No 440
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=90.25 E-value=1 Score=48.65 Aligned_cols=103 Identities=18% Similarity=0.348 Sum_probs=61.6
Q ss_pred EeecccccccCce---eeeecCCCCChhHHHHHHHHHHHhhcCCE-EEEEEecCCchhHHHHHHHHHHhcccccCcccCC
Q 008638 216 VVDLLAPYQRGGK---IGLFGGAGVGKTVLIMELINNVAKAHGGF-SVFAGVGERTREGNDLYREMIESGVIKLGDKQAD 291 (558)
Q Consensus 216 vID~l~PigkGqr---~gIfGg~g~GKT~L~~~~i~n~a~~~~~v-~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~ 291 (558)
..+.|.|+-+|.+ +.|-|++|||||+++..++.......... .+|+=|=+ -++...++.++.+. +
T Consensus 29 l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~-~~t~~~i~~~i~~~----~------ 97 (366)
T COG1474 29 LASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLE-LRTPYQVLSKILNK----L------ 97 (366)
T ss_pred HHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeee-CCCHHHHHHHHHHH----c------
Confidence 3444777777665 77999999999999988887654433333 56654433 22333444444331 0
Q ss_pred CeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhH
Q 008638 292 SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRF 340 (558)
Q Consensus 292 ~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~ 340 (558)
.++|...+.....=..+-+++.. +++.+++++|.+-.+
T Consensus 98 ----------~~~p~~g~~~~~~~~~l~~~~~~-~~~~~IvvLDEid~L 135 (366)
T COG1474 98 ----------GKVPLTGDSSLEILKRLYDNLSK-KGKTVIVILDEVDAL 135 (366)
T ss_pred ----------CCCCCCCCchHHHHHHHHHHHHh-cCCeEEEEEcchhhh
Confidence 02222222222233445566676 799999999998744
No 441
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.24 E-value=0.22 Score=52.71 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=23.7
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.|.+|++++|+|+.|+|||+|+.-+.
T Consensus 103 ~~I~~Ge~v~IvG~~GsGKSTLl~~L~ 129 (329)
T PRK14257 103 LDIKRNKVTAFIGPSGCGKSTFLRNLN 129 (329)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 457899999999999999999997554
No 442
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=90.24 E-value=0.2 Score=50.44 Aligned_cols=29 Identities=31% Similarity=0.507 Sum_probs=24.5
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
.=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 15 vsl~i~~Gei~~l~G~nGsGKSTLl~~l~ 43 (248)
T PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMA 43 (248)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 33568899999999999999999996443
No 443
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=90.23 E-value=0.22 Score=55.90 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=26.4
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
=+.+..|+|+.|+|.+|+|||||++-+..+.
T Consensus 358 ~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~ 388 (573)
T COG4987 358 NLTLAQGEKVAILGRSGSGKSTLLQLLAGAW 388 (573)
T ss_pred ceeecCCCeEEEECCCCCCHHHHHHHHHhcc
Confidence 4679999999999999999999997555443
No 444
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=90.20 E-value=0.38 Score=49.62 Aligned_cols=38 Identities=34% Similarity=0.536 Sum_probs=29.0
Q ss_pred Eeecccc-cccCceeeeecCCCCChhHHHHHHHHHHHhh
Q 008638 216 VVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (558)
Q Consensus 216 vID~l~P-igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~ 253 (558)
.++.+.| -|+..++||-|++|+|||||+-.++....+.
T Consensus 18 ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 18 LLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 3444555 4788899999999999999999999887654
No 445
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.18 E-value=0.37 Score=54.44 Aligned_cols=34 Identities=44% Similarity=0.723 Sum_probs=28.8
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHHHHhhc
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 254 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~ 254 (558)
-++.+|+.++|+|+.|+||||++..++...+..+
T Consensus 345 ~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~ 378 (559)
T PRK12727 345 DPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQH 378 (559)
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 4677899999999999999999988887665543
No 446
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=90.17 E-value=0.39 Score=46.28 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=19.8
Q ss_pred eeeecCCCCChhHHHHHHHHHHH
Q 008638 229 IGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
++|.|++|+|||||+..++....
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999987776654
No 447
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=90.15 E-value=0.2 Score=57.62 Aligned_cols=30 Identities=37% Similarity=0.581 Sum_probs=25.3
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
|+=+.+.+|++++|+|+.|+|||||+.-|.
T Consensus 19 ~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~ 48 (638)
T PRK10636 19 NATATINPGQKVGLVGKNGCGKSTLLALLK 48 (638)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 444678999999999999999999996443
No 448
>PRK08006 replicative DNA helicase; Provisional
Probab=90.14 E-value=0.31 Score=54.33 Aligned_cols=59 Identities=22% Similarity=0.124 Sum_probs=46.3
Q ss_pred ceeeeeeeEeeccc-ccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCc
Q 008638 208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267 (558)
Q Consensus 208 e~l~TGIkvID~l~-PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~ 267 (558)
.-+.||+.-+|-++ -+.+|+=+.|=|.+|+|||+++..++.|.+..+ +..|....-|=+
T Consensus 205 ~Gi~TG~~~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~-g~~V~~fSlEM~ 264 (471)
T PRK08006 205 TGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQ-DKPVLIFSLEMP 264 (471)
T ss_pred CcccCCCHHHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhc-CCeEEEEeccCC
Confidence 34899999999964 788899999999999999999999999987543 445544455543
No 449
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=90.10 E-value=0.23 Score=43.57 Aligned_cols=21 Identities=33% Similarity=0.646 Sum_probs=18.8
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|++|+|.+|+|||+|+..+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999987764
No 450
>PLN03073 ABC transporter F family; Provisional
Probab=90.10 E-value=0.2 Score=58.54 Aligned_cols=30 Identities=30% Similarity=0.457 Sum_probs=26.0
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
|.=+.|..|.|+||+|+.|+|||||+.-|.
T Consensus 195 ~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~ 224 (718)
T PLN03073 195 DASVTLAFGRHYGLVGRNGTGKTTFLRYMA 224 (718)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHc
Confidence 456789999999999999999999997543
No 451
>PRK08233 hypothetical protein; Provisional
Probab=90.04 E-value=0.26 Score=46.33 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=20.3
Q ss_pred cCceeeeecCCCCChhHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
++.-++|.|++|+|||||+..+...
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 3467899999999999999766543
No 452
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=90.03 E-value=0.23 Score=53.04 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=25.8
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.=+.|..|.-+.|+||+|||||||+. ||...
T Consensus 22 i~l~i~~Gef~vllGPSGcGKSTlLr-~IAGL 52 (338)
T COG3839 22 VNLDIEDGEFVVLLGPSGCGKSTLLR-MIAGL 52 (338)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHH-HHhCC
Confidence 34578999999999999999999995 55544
No 453
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=90.01 E-value=0.24 Score=55.92 Aligned_cols=31 Identities=35% Similarity=0.581 Sum_probs=26.4
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
|+=+-|-+|.|++|+|+.|+|||||+.-++.
T Consensus 340 ~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g 370 (530)
T COG0488 340 DLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG 370 (530)
T ss_pred CceEEecCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4556788999999999999999999975543
No 454
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.92 E-value=0.25 Score=50.69 Aligned_cols=29 Identities=24% Similarity=0.467 Sum_probs=24.5
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+.+.+|+.++|+|++|+|||||+. ++...
T Consensus 28 l~i~~Ge~~~I~G~nGsGKSTLl~-~l~Gl 56 (277)
T PRK13642 28 FSITKGEWVSIIGQNGSGKSTTAR-LIDGL 56 (277)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHH-HHhcC
Confidence 567799999999999999999996 44443
No 455
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=89.90 E-value=2.5 Score=46.76 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=22.3
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHHh
Q 008638 227 GKIGLFGGAGVGKTVLIMELINNVAK 252 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n~a~ 252 (558)
..++++|..|+||||++..++....+
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~ 126 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQR 126 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47899999999999999998876544
No 456
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=89.86 E-value=0.99 Score=52.23 Aligned_cols=107 Identities=19% Similarity=0.210 Sum_probs=58.4
Q ss_pred eeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHH
Q 008638 230 GLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARA 309 (558)
Q Consensus 230 gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~ 309 (558)
++.|++|+|||+++.-+++..-+.++ + .--.||+. ...+++.+..-. ..+.+ ...+.--....
T Consensus 42 Lf~Gp~GvGKTTlAr~lAk~L~c~~~-~-~~~pCg~C-----~~C~~i~~g~~~---------D~iei-daas~~~Vddi 104 (647)
T PRK07994 42 LFSGTRGVGKTTIARLLAKGLNCETG-I-TATPCGEC-----DNCREIEQGRFV---------DLIEI-DAASRTKVEDT 104 (647)
T ss_pred EEECCCCCCHHHHHHHHHHhhhhccC-C-CCCCCCCC-----HHHHHHHcCCCC---------Cceee-cccccCCHHHH
Confidence 78899999999999877655422111 0 01235543 333444221100 11112 22211122223
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEeecccchhHHH-HHHHHHhhhCCCCCC
Q 008638 310 RVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ-ANSEVSALLGRIPSA 357 (558)
Q Consensus 310 ~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~-A~rEis~~lgr~P~~ 357 (558)
|-..- -+.|--- +|+.-++|+|..-++.. |.+.+=..+.|||..
T Consensus 105 R~li~---~~~~~p~-~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~ 149 (647)
T PRK07994 105 RELLD---NVQYAPA-RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 (647)
T ss_pred HHHHH---HHHhhhh-cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCC
Confidence 32211 1222222 58888999999988885 888888889998876
No 457
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=89.86 E-value=0.23 Score=48.48 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=27.9
Q ss_pred cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEec
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG 264 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iG 264 (558)
...+.-+.|.|++|||||+|+..+.+. +...+.-.+|+-+.
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~~~~~~-~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQAACAA-AEERGKSAIYLPLA 75 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHH-HHhcCCcEEEEeHH
Confidence 456678999999999999999876654 33222234555443
No 458
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=89.85 E-value=2.4 Score=46.76 Aligned_cols=43 Identities=21% Similarity=0.175 Sum_probs=28.6
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhH
Q 008638 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG 270 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv 270 (558)
.+.+.|.+|+||||++..++....+.++.-+.++.++-+....
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a 143 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAA 143 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHH
Confidence 5789999999999999988877542222234455666443333
No 459
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=89.81 E-value=0.25 Score=53.09 Aligned_cols=31 Identities=32% Similarity=0.498 Sum_probs=25.2
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.=+.+.+|+.++|+|++|+|||||+. +|...
T Consensus 24 vsl~i~~Ge~~~llGpsGsGKSTLLr-~iaGl 54 (362)
T TIGR03258 24 LSLEIEAGELLALIGKSGCGKTTLLR-AIAGF 54 (362)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHH-HHhCC
Confidence 34567899999999999999999996 44443
No 460
>PRK05480 uridine/cytidine kinase; Provisional
Probab=89.81 E-value=0.28 Score=47.81 Aligned_cols=27 Identities=30% Similarity=0.550 Sum_probs=22.5
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.++-.++|.|++|+|||||+..+....
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467789999999999999997665543
No 461
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=89.78 E-value=0.27 Score=47.43 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=23.0
Q ss_pred cccCceeeeecCCCCChhHHHHHHHHH
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
+-+|+.++|.|+.|+|||||+..++..
T Consensus 22 v~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 22 VEARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 557899999999999999999766544
No 462
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=89.76 E-value=0.29 Score=55.01 Aligned_cols=28 Identities=39% Similarity=0.663 Sum_probs=23.7
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
+.+-+|++++|+|++|+|||||+. ++..
T Consensus 344 ~~i~~G~~~aivG~sGsGKSTL~~-ll~g 371 (547)
T PRK10522 344 LTIKRGELLFLIGGNGSGKSTLAM-LLTG 371 (547)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHH-HHhC
Confidence 467799999999999999999995 4433
No 463
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=89.73 E-value=0.34 Score=47.15 Aligned_cols=42 Identities=29% Similarity=0.231 Sum_probs=30.6
Q ss_pred eEeecccccccCce-eeeecCCCCChhHHHHHHHHHHHhhcCC
Q 008638 215 KVVDLLAPYQRGGK-IGLFGGAGVGKTVLIMELINNVAKAHGG 256 (558)
Q Consensus 215 kvID~l~PigkGqr-~gIfGg~g~GKT~L~~~~i~n~a~~~~~ 256 (558)
+.++.=+.+..|.| ++|.|+.|+|||||+..+...+...+.+
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G 58 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSG 58 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcC
Confidence 45666667888865 9999999999999998765343333333
No 464
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=89.69 E-value=0.25 Score=55.18 Aligned_cols=30 Identities=30% Similarity=0.574 Sum_probs=25.5
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
.=+.+.+|++++|+|++|+|||||+.-+..
T Consensus 19 is~~i~~Ge~~~iiG~nGsGKSTLl~~l~G 48 (520)
T TIGR03269 19 ISFTIEEGEVLGILGRSGAGKSVLMHVLRG 48 (520)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 446788999999999999999999965543
No 465
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.68 E-value=1 Score=50.36 Aligned_cols=109 Identities=17% Similarity=0.107 Sum_probs=56.7
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGA 307 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~ 307 (558)
-+++.|++|+|||+++.-+++..-..++ .-.-.||+... .+++.+... .-++.++.++.--..
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk~Lnce~~--~~~~pCg~C~s-----C~~i~~g~~----------~dviEIdaas~~gVd 104 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAKRLNCENP--IGNEPCNECTS-----CLEITKGIS----------SDVLEIDAASNRGIE 104 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcccc--cCccccCCCcH-----HHHHHccCC----------ccceeechhhcccHH
Confidence 4689999999999999877665422111 11233554332 122322110 011122221111111
Q ss_pred HHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHH-HHHHHHhhhCCCCCC
Q 008638 308 RARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ-ANSEVSALLGRIPSA 357 (558)
Q Consensus 308 r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~-A~rEis~~lgr~P~~ 357 (558)
..+-.. .-+.|-. ..|+..++|+|.+-++.. |++.+-..+.+||..
T Consensus 105 ~IReL~---e~l~~~p-~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~ 151 (484)
T PRK14956 105 NIRELR---DNVKFAP-MGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAH 151 (484)
T ss_pred HHHHHH---HHHHhhh-hcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCc
Confidence 222111 1111222 257888999999988876 677777788888765
No 466
>PRK00889 adenylylsulfate kinase; Provisional
Probab=89.65 E-value=0.5 Score=44.73 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=23.4
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
+|.-+.|.|.+|+||||++..+.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999988877653
No 467
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=89.64 E-value=0.27 Score=47.27 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.0
Q ss_pred cCceeeeecCCCCChhHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i 247 (558)
.|..+.|.|++|+|||||+..+.
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~ 23 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALR 23 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 37889999999999999997663
No 468
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=89.62 E-value=0.66 Score=55.60 Aligned_cols=62 Identities=23% Similarity=0.359 Sum_probs=43.9
Q ss_pred eEeecccccccCceeeeecCCCCChhHHHHHHHHHHH--hhcCCEEEEEEecCCchhHHHHHHHHH
Q 008638 215 KVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGFSVFAGVGERTREGNDLYREMI 278 (558)
Q Consensus 215 kvID~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a--~~~~~v~V~~~iGER~rEv~d~~~e~~ 278 (558)
|+.+.|...+- |-+||+|-.|+|||||+.++-|... +.+-|+.+++.|.+ .-.+.+++++..
T Consensus 169 kl~~~L~~d~~-~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk-~f~~~~iq~~Il 232 (889)
T KOG4658|consen 169 KLWNRLMEDDV-GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSK-EFTTRKIQQTIL 232 (889)
T ss_pred HHHHHhccCCC-CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcc-cccHHhHHHHHH
Confidence 45556666666 9999999999999999987766543 34457888888886 333444555443
No 469
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=89.61 E-value=0.26 Score=53.24 Aligned_cols=31 Identities=23% Similarity=0.507 Sum_probs=25.6
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.=+.+.+|+.++|+|++|+|||||+. +|...
T Consensus 38 vsl~i~~Ge~~~llGpsGsGKSTLLr-~IaGl 68 (377)
T PRK11607 38 VSLTIYKGEIFALLGASGCGKSTLLR-MLAGF 68 (377)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHH-HHhCC
Confidence 44678899999999999999999995 54444
No 470
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=89.61 E-value=0.78 Score=46.93 Aligned_cols=47 Identities=38% Similarity=0.602 Sum_probs=36.0
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEE-EEEecCCchhHHHHHHHHHHh
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSV-FAGVGERTREGNDLYREMIES 280 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V-~~~iGER~rEv~d~~~e~~e~ 280 (558)
+|.-+.+.|++|||||-|+.-|.+..++ .+++| |+= +.|++.++.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~--~g~sv~f~~-------~~el~~~Lk~~ 151 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLK--AGISVLFIT-------APDLLSKLKAA 151 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEE-------HHHHHHHHHHH
Confidence 8889999999999999999988888774 25555 443 45677776553
No 471
>PRK14530 adenylate kinase; Provisional
Probab=89.59 E-value=0.3 Score=48.03 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=20.8
Q ss_pred cCceeeeecCCCCChhHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
.|-++.|+|++|+||||++..+...
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999866543
No 472
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=89.58 E-value=0.39 Score=51.18 Aligned_cols=30 Identities=30% Similarity=0.412 Sum_probs=24.8
Q ss_pred cccCceeeeecCCCCChhHHHHHHHHHHHh
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~n~a~ 252 (558)
-++.-++||.|++|+|||||+..++....+
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~ 82 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIE 82 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 355668999999999999999888776643
No 473
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=89.56 E-value=0.24 Score=44.73 Aligned_cols=22 Identities=45% Similarity=0.813 Sum_probs=19.3
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|+.|+|.+|+|||+|+..++.+
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999877653
No 474
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.56 E-value=0.28 Score=50.56 Aligned_cols=30 Identities=27% Similarity=0.552 Sum_probs=25.0
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
=+.+-+|+.++|+|+.|+|||||+. +|...
T Consensus 26 s~~i~~Ge~~~i~G~nGaGKSTLl~-~i~Gl 55 (283)
T PRK13636 26 NINIKKGEVTAILGGNGAGKSTLFQ-NLNGI 55 (283)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHH-HHhcC
Confidence 3677899999999999999999996 44444
No 475
>CHL00181 cbbX CbbX; Provisional
Probab=89.54 E-value=3.1 Score=43.36 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=21.8
Q ss_pred cccCceeeeecCCCCChhHHHHHHHHH
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
..+|-.+.+.|++|||||+++.-+...
T Consensus 56 ~~~~~~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 56 SNPGLHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 345667899999999999999766553
No 476
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=89.49 E-value=0.75 Score=51.80 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=19.6
Q ss_pred eeeeecCCCCChhHHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.++|.|++|||||+++.-+++..
T Consensus 218 GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred ceEEECCCCCcHHHHHHHHHHhh
Confidence 38999999999999998776654
No 477
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=89.45 E-value=0.23 Score=56.10 Aligned_cols=29 Identities=34% Similarity=0.539 Sum_probs=24.8
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
=+.+.+|++++|+|++|+|||||+.=+..
T Consensus 370 ~l~i~~G~~vaIvG~SGsGKSTL~~lL~g 398 (588)
T PRK11174 370 NFTLPAGQRIALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 36788999999999999999999964443
No 478
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=89.40 E-value=0.24 Score=57.45 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=24.7
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
|.=+.|-+|++++|+|++|+|||||+.-+
T Consensus 492 ~isl~i~~G~~vaIvG~SGsGKSTLlklL 520 (708)
T TIGR01193 492 DISLTIKMNSKTTIVGMSGSGKSTLAKLL 520 (708)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 33467899999999999999999999644
No 479
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=89.35 E-value=0.3 Score=54.42 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=23.1
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+.+|++++|+|++|+|||||+.-+
T Consensus 343 l~i~~G~~~~ivG~sGsGKSTL~~ll 368 (529)
T TIGR02857 343 FTVPPGERVALVGPSGAGKSTLLNLL 368 (529)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHH
Confidence 56789999999999999999999644
No 480
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.35 E-value=0.53 Score=51.78 Aligned_cols=29 Identities=34% Similarity=0.530 Sum_probs=25.0
Q ss_pred ccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 222 PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 222 PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
++.+|++++++|+.|+||||++.-|....
T Consensus 187 ~~~~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 187 IIEQGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998777644
No 481
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=89.34 E-value=0.25 Score=56.79 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=25.7
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+=+.+.+|++++|+|+.|+|||||+. +|...
T Consensus 22 is~~i~~Ge~v~LvG~NGsGKSTLLr-iiaG~ 52 (635)
T PRK11147 22 AELHIEDNERVCLVGRNGAGKSTLMK-ILNGE 52 (635)
T ss_pred cEEEECCCCEEEEECCCCCCHHHHHH-HHcCC
Confidence 44678899999999999999999996 44443
No 482
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=89.29 E-value=0.36 Score=42.47 Aligned_cols=24 Identities=38% Similarity=0.689 Sum_probs=20.3
Q ss_pred eeeecCCCCChhHHHHHHHHHHHh
Q 008638 229 IGLFGGAGVGKTVLIMELINNVAK 252 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i~n~a~ 252 (558)
+-|.|++|+|||+|+..++....+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999988877654
No 483
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=89.29 E-value=0.5 Score=45.63 Aligned_cols=21 Identities=48% Similarity=0.862 Sum_probs=17.9
Q ss_pred eeeecCCCCChhHHHHHHHHH
Q 008638 229 IGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i~n 249 (558)
+||.|++|+|||||+..+...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999766544
No 484
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=89.28 E-value=0.27 Score=55.03 Aligned_cols=29 Identities=28% Similarity=0.558 Sum_probs=24.7
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
.=+.+.+|++++|+|+.|+|||||+.-+.
T Consensus 20 vsl~i~~Ge~~~liG~NGsGKSTLl~~l~ 48 (530)
T PRK15064 20 ISVKFGGGNRYGLIGANGCGKSTFMKILG 48 (530)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 34678999999999999999999996443
No 485
>PRK08084 DNA replication initiation factor; Provisional
Probab=89.27 E-value=0.39 Score=48.25 Aligned_cols=40 Identities=18% Similarity=0.356 Sum_probs=26.8
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecC
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGE 265 (558)
.+..+.|.|++|+|||.|++-+.+...+ ++.-++|.-..+
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~-~~~~v~y~~~~~ 83 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQ-RGRAVGYVPLDK 83 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEEHHH
Confidence 4467899999999999999866665433 222344554433
No 486
>PRK14531 adenylate kinase; Provisional
Probab=89.26 E-value=0.32 Score=46.73 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=19.7
Q ss_pred ceeeeecCCCCChhHHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n 249 (558)
+|+.|+|++|+||||++..+...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999766543
No 487
>PRK06217 hypothetical protein; Validated
Probab=89.24 E-value=0.31 Score=46.74 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.0
Q ss_pred ceeeeecCCCCChhHHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n 249 (558)
.||.|+|.+|+|||||+..+...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999877654
No 488
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=89.24 E-value=0.28 Score=48.54 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=24.1
Q ss_pred ccccccCceeeeecCCCCChhHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
-+++-+||.++|+|..|+|||||+.++
T Consensus 33 SFtL~~~QTlaiIG~NGSGKSTLakMl 59 (267)
T COG4167 33 SFTLREGQTLAIIGENGSGKSTLAKML 59 (267)
T ss_pred EEEecCCcEEEEEccCCCcHhHHHHHH
Confidence 367899999999999999999999644
No 489
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.21 E-value=1.3 Score=48.06 Aligned_cols=22 Identities=32% Similarity=0.265 Sum_probs=18.4
Q ss_pred eeeecCCCCChhHHHHHHHHHH
Q 008638 229 IGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.++.|++|+|||+++.-+++..
T Consensus 41 ~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 41 YIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999998776654
No 490
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=89.21 E-value=0.3 Score=49.59 Aligned_cols=34 Identities=32% Similarity=0.593 Sum_probs=27.5
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHHHHHHh
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~ 252 (558)
|.-+.+.+|++++|+|++|+|||||+. +++...+
T Consensus 22 ~v~~~i~~Ge~~~i~G~nGsGKSTL~~-~l~GLl~ 55 (235)
T COG1122 22 DVSLEIEKGERVLLIGPNGSGKSTLLK-LLNGLLK 55 (235)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHH-HHcCcCc
Confidence 556779999999999999999999996 4444433
No 491
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=89.21 E-value=0.27 Score=54.68 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=24.7
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
.=+.+.+|+.++|+|+.|+|||||+.-+.
T Consensus 23 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~ 51 (501)
T PRK10762 23 AALNVYPGRVMALVGENGAGKSTMMKVLT 51 (501)
T ss_pred eeEEEcCCeEEEEECCCCCCHHHHHHHHh
Confidence 34578899999999999999999996443
No 492
>PF12846 AAA_10: AAA-like domain
Probab=89.16 E-value=0.48 Score=47.58 Aligned_cols=44 Identities=23% Similarity=0.309 Sum_probs=29.5
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYR 275 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~ 275 (558)
-++|+|.+|+|||++++.++.+..... ..|++. ....|...+.+
T Consensus 3 h~~i~G~tGsGKT~~~~~l~~~~~~~g--~~~~i~--D~~g~~~~~~~ 46 (304)
T PF12846_consen 3 HTLILGKTGSGKTTLLKNLLEQLIRRG--PRVVIF--DPKGDYSPLAR 46 (304)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHcC--CCEEEE--cCCchHHHHHH
Confidence 468999999999999998887766543 333333 44455544333
No 493
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=89.15 E-value=0.27 Score=56.58 Aligned_cols=29 Identities=38% Similarity=0.607 Sum_probs=25.1
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
.=+.+.+|++++|+|+.|+|||||+.-+.
T Consensus 331 isl~i~~Ge~~~l~G~NGsGKSTLlk~l~ 359 (638)
T PRK10636 331 IKLNLVPGSRIGLLGRNGAGKSTLIKLLA 359 (638)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 44678899999999999999999996554
No 494
>PRK06696 uridine kinase; Validated
Probab=89.13 E-value=0.48 Score=47.01 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.9
Q ss_pred eeeeecCCCCChhHHHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
-++|-|++|+|||||+..+.....
T Consensus 24 iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 24 RVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999988876653
No 495
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=89.05 E-value=0.25 Score=44.51 Aligned_cols=21 Identities=29% Similarity=0.763 Sum_probs=18.6
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|++|+|++|+|||+|+..++.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~ 21 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVK 21 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999987764
No 496
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=89.04 E-value=0.29 Score=55.29 Aligned_cols=31 Identities=32% Similarity=0.646 Sum_probs=25.8
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.=+.+..|++++|+|+.|+|||||+. +|...
T Consensus 26 vs~~i~~Ge~~~iiG~NGsGKSTLlk-~i~G~ 56 (556)
T PRK11819 26 ISLSFFPGAKIGVLGLNGAGKSTLLR-IMAGV 56 (556)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHH-HHhCC
Confidence 33689999999999999999999996 44443
No 497
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=89.03 E-value=0.24 Score=57.34 Aligned_cols=28 Identities=29% Similarity=0.532 Sum_probs=24.0
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+-+|++++|+|++|+|||||+.-+.
T Consensus 499 sl~i~~Ge~vaIvG~sGsGKSTLlklL~ 526 (710)
T TIGR03796 499 SLTLQPGQRVALVGGSGSGKSTIAKLVA 526 (710)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3567899999999999999999996443
No 498
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=88.98 E-value=0.51 Score=45.67 Aligned_cols=32 Identities=34% Similarity=0.598 Sum_probs=25.1
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEE
Q 008638 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFA 261 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~ 261 (558)
|++|-|.+|+|||||++.++..... .++.|-.
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~--~g~kvgG 38 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLRE--KGYKVGG 38 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHh--cCceeee
Confidence 7999999999999999988866543 2466643
No 499
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=88.98 E-value=0.26 Score=55.79 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=24.8
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
|.=+.+-+|++++|+|++|+|||||+.-+
T Consensus 359 ~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL 387 (592)
T PRK10790 359 NINLSVPSRGFVALVGHTGSGKSTLASLL 387 (592)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 34467899999999999999999999544
No 500
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=88.95 E-value=0.35 Score=54.77 Aligned_cols=28 Identities=32% Similarity=0.654 Sum_probs=24.0
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
+.+.+|++++|+|++|+|||||+. ++..
T Consensus 361 ~~i~~G~~~aivG~sGsGKSTL~~-ll~g 388 (574)
T PRK11160 361 LQIKAGEKVALLGRTGCGKSTLLQ-LLTR 388 (574)
T ss_pred EEECCCCEEEEECCCCCCHHHHHH-HHhc
Confidence 567899999999999999999995 4443
Done!