Query 008638
Match_columns 558
No_of_seqs 320 out of 2351
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 08:14:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008638.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008638hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fx0_B ATP synthase beta chain 100.0 3E-131 1E-135 1067.4 39.9 469 86-555 19-493 (498)
2 2ck3_D ATP synthase subunit be 100.0 6E-130 2E-134 1053.9 46.5 472 82-555 9-480 (482)
3 1sky_E F1-ATPase, F1-ATP synth 100.0 5E-120 2E-124 978.0 43.3 460 87-554 3-471 (473)
4 3oaa_A ATP synthase subunit al 100.0 3E-110 9E-115 902.7 37.8 424 84-536 25-464 (513)
5 2ck3_A ATP synthase subunit al 100.0 3E-109 1E-113 897.5 39.2 423 85-535 26-460 (510)
6 2qe7_A ATP synthase subunit al 100.0 4E-109 1E-113 896.0 36.2 422 85-535 26-452 (502)
7 2r9v_A ATP synthase subunit al 100.0 9E-109 3E-113 893.2 38.1 423 85-535 38-465 (515)
8 1fx0_A ATP synthase alpha chai 100.0 3E-109 9E-114 898.0 31.1 421 85-535 27-453 (507)
9 2c61_A A-type ATP synthase non 100.0 1E-108 5E-113 887.5 35.2 430 85-538 12-452 (469)
10 3vr4_D V-type sodium ATPase su 100.0 1E-107 4E-112 876.6 40.3 424 85-536 10-449 (465)
11 3gqb_B V-type ATP synthase bet 100.0 1E-106 4E-111 868.7 37.7 425 85-538 6-453 (464)
12 3vr4_A V-type sodium ATPase ca 100.0 2E-104 6E-109 866.8 32.8 420 87-517 10-532 (600)
13 3gqb_A V-type ATP synthase alp 100.0 2E-104 7E-109 863.6 28.6 423 87-520 3-522 (578)
14 3mfy_A V-type ATP synthase alp 100.0 1E-104 3E-109 866.2 18.8 424 86-520 3-530 (588)
15 3l0o_A Transcription terminati 100.0 9.1E-79 3.1E-83 640.2 18.2 350 111-483 60-417 (427)
16 3ice_A Transcription terminati 100.0 2.2E-75 7.5E-80 615.5 19.4 348 111-477 56-410 (422)
17 2dpy_A FLII, flagellum-specifi 100.0 9.8E-71 3.4E-75 592.2 31.0 415 85-525 8-436 (438)
18 2obl_A ESCN; ATPase, hydrolase 100.0 2.3E-69 7.9E-74 565.7 23.9 343 158-524 2-346 (347)
19 2zts_A Putative uncharacterize 97.5 7.6E-05 2.6E-09 71.4 5.3 63 208-270 10-74 (251)
20 3io5_A Recombination and repai 97.4 0.00014 4.8E-09 75.4 6.3 111 208-341 5-124 (333)
21 2w0m_A SSO2452; RECA, SSPF, un 97.4 0.00015 5.3E-09 68.3 5.3 58 208-266 3-62 (235)
22 2ehv_A Hypothetical protein PH 97.3 0.00015 5.1E-09 69.5 5.0 44 208-251 10-55 (251)
23 2zr9_A Protein RECA, recombina 97.2 0.00093 3.2E-08 69.5 9.0 111 207-341 39-152 (349)
24 3hr8_A Protein RECA; alpha and 97.1 0.00077 2.6E-08 70.5 7.6 57 208-266 40-99 (356)
25 2dr3_A UPF0273 protein PH0284; 97.1 0.00039 1.3E-08 66.4 5.0 58 208-266 3-62 (247)
26 2cvh_A DNA repair and recombin 97.1 0.00029 9.9E-09 66.2 3.9 39 210-248 2-42 (220)
27 2z43_A DNA repair and recombin 97.1 0.0013 4.4E-08 67.2 8.9 46 207-252 86-133 (324)
28 1v5w_A DMC1, meiotic recombina 97.0 0.0012 4.1E-08 68.2 7.9 45 207-251 101-147 (343)
29 1n0w_A DNA repair protein RAD5 97.0 0.00046 1.6E-08 65.9 4.0 43 208-250 4-48 (243)
30 1xp8_A RECA protein, recombina 96.9 0.0019 6.5E-08 67.7 8.7 111 207-341 52-165 (366)
31 1u94_A RECA protein, recombina 96.9 0.0016 5.6E-08 67.9 7.6 111 207-341 41-154 (356)
32 1pyv_A ATP synthase beta chain 96.9 0.00037 1.3E-08 51.3 1.9 51 1-51 1-54 (54)
33 4a74_A DNA repair and recombin 96.9 0.00031 1.1E-08 66.4 1.9 43 208-250 5-49 (231)
34 3lda_A DNA repair protein RAD5 96.7 0.003 1E-07 67.0 8.3 47 205-251 155-203 (400)
35 2i1q_A DNA repair and recombin 96.6 0.0047 1.6E-07 62.5 8.7 44 207-250 77-122 (322)
36 1cr0_A DNA primase/helicase; R 96.3 0.0024 8.3E-08 63.6 4.3 48 208-255 15-64 (296)
37 3bs4_A Uncharacterized protein 96.3 0.029 1E-06 56.2 12.0 62 210-272 3-66 (260)
38 1nlf_A Regulatory protein REPA 96.2 0.0039 1.3E-07 61.7 4.9 47 206-252 9-56 (279)
39 1pzn_A RAD51, DNA repair and r 96.0 0.0021 7.3E-08 66.6 2.1 45 206-250 109-155 (349)
40 2v1u_A Cell division control p 95.9 0.015 5E-07 58.9 7.9 99 224-343 42-145 (387)
41 3cmw_A Protein RECA, recombina 95.9 0.0094 3.2E-07 73.4 7.4 115 205-343 10-127 (1706)
42 3bh0_A DNAB-like replicative h 95.9 0.0055 1.9E-07 62.4 4.6 56 208-265 49-105 (315)
43 2r6a_A DNAB helicase, replicat 95.8 0.0058 2E-07 65.3 4.3 59 208-267 184-243 (454)
44 3cmu_A Protein RECA, recombina 95.7 0.013 4.3E-07 73.3 7.4 117 203-343 8-127 (2050)
45 3cmw_A Protein RECA, recombina 95.6 0.02 6.9E-07 70.6 8.4 111 207-341 361-474 (1706)
46 2q6t_A DNAB replication FORK h 95.4 0.0086 2.9E-07 63.8 4.0 60 208-268 181-241 (444)
47 3cmu_A Protein RECA, recombina 95.4 0.024 8.3E-07 70.8 8.4 111 206-340 1058-1171(2050)
48 3bgw_A DNAB-like replicative h 95.4 0.0084 2.9E-07 64.3 3.8 58 208-267 178-236 (444)
49 2qby_A CDC6 homolog 1, cell di 95.3 0.017 5.7E-07 58.3 5.8 98 224-342 43-142 (386)
50 3ec2_A DNA replication protein 95.2 0.012 4E-07 54.0 3.9 30 222-251 34-63 (180)
51 1w5s_A Origin recognition comp 95.1 0.061 2.1E-06 55.0 9.3 96 225-341 49-151 (412)
52 4a1f_A DNAB helicase, replicat 95.1 0.012 4.2E-07 61.0 4.1 60 208-269 27-87 (338)
53 1zp6_A Hypothetical protein AT 95.1 0.0095 3.2E-07 54.8 2.8 28 220-247 3-30 (191)
54 1fnn_A CDC6P, cell division co 94.8 0.075 2.6E-06 53.8 8.8 96 224-340 40-137 (389)
55 2z4s_A Chromosomal replication 94.7 0.054 1.9E-06 57.6 7.8 34 226-259 130-163 (440)
56 1q57_A DNA primase/helicase; d 94.7 0.012 3.9E-07 63.6 2.5 60 207-266 221-282 (503)
57 1tf7_A KAIC; homohexamer, hexa 94.7 0.02 6.9E-07 62.2 4.3 57 208-266 19-78 (525)
58 1l8q_A Chromosomal replication 94.5 0.091 3.1E-06 52.7 8.5 27 225-251 36-62 (324)
59 2yhs_A FTSY, cell division pro 94.5 0.18 6E-06 55.1 11.3 31 221-251 288-318 (503)
60 1znw_A Guanylate kinase, GMP k 94.5 0.018 6.2E-07 54.3 3.1 26 222-247 16-41 (207)
61 1z6g_A Guanylate kinase; struc 94.5 0.018 6.2E-07 55.2 3.0 28 221-248 18-45 (218)
62 2vhj_A Ntpase P4, P4; non- hyd 94.4 0.024 8.3E-07 58.7 4.1 42 208-249 104-146 (331)
63 3tr0_A Guanylate kinase, GMP k 94.3 0.022 7.6E-07 52.8 3.2 26 223-248 4-29 (205)
64 4eun_A Thermoresistant glucoki 94.2 0.028 9.6E-07 52.6 3.6 39 210-248 13-51 (200)
65 3te6_A Regulatory protein SIR3 94.0 0.12 4.2E-06 53.0 8.3 96 223-341 42-145 (318)
66 1z6t_A APAF-1, apoptotic prote 93.9 0.055 1.9E-06 58.8 5.9 42 225-266 146-190 (591)
67 2a5y_B CED-4; apoptosis; HET: 93.9 0.079 2.7E-06 57.7 7.0 53 227-279 153-209 (549)
68 4gp7_A Metallophosphoesterase; 93.7 0.026 9E-07 51.8 2.4 25 221-245 4-28 (171)
69 3c8u_A Fructokinase; YP_612366 93.6 0.034 1.2E-06 52.5 3.1 27 223-249 19-45 (208)
70 1tf7_A KAIC; homohexamer, hexa 93.6 0.042 1.4E-06 59.7 4.1 59 207-267 260-320 (525)
71 1htw_A HI0065; nucleotide-bind 93.5 0.036 1.2E-06 51.0 3.0 29 221-249 28-56 (158)
72 2v9p_A Replication protein E1; 93.5 0.032 1.1E-06 57.1 2.9 32 218-249 118-149 (305)
73 1vma_A Cell division protein F 93.5 0.42 1.4E-05 48.6 11.2 42 223-265 101-142 (306)
74 3e70_C DPA, signal recognition 93.5 0.33 1.1E-05 49.9 10.5 41 223-264 126-166 (328)
75 1kgd_A CASK, peripheral plasma 93.5 0.043 1.5E-06 50.6 3.5 25 225-249 4-28 (180)
76 3tif_A Uncharacterized ABC tra 93.5 0.038 1.3E-06 53.9 3.2 30 219-249 24-53 (235)
77 1pui_A ENGB, probable GTP-bind 93.4 0.03 1E-06 51.8 2.3 32 215-247 16-47 (210)
78 1lvg_A Guanylate kinase, GMP k 93.4 0.038 1.3E-06 52.0 3.0 26 224-249 2-27 (198)
79 2qm8_A GTPase/ATPase; G protei 93.3 0.077 2.6E-06 54.6 5.4 41 220-260 49-89 (337)
80 2cbz_A Multidrug resistance-as 93.3 0.042 1.4E-06 53.7 3.2 26 221-246 26-51 (237)
81 2j41_A Guanylate kinase; GMP, 93.3 0.047 1.6E-06 50.5 3.4 25 223-247 3-27 (207)
82 2pcj_A ABC transporter, lipopr 93.2 0.04 1.4E-06 53.3 2.8 30 219-249 23-52 (224)
83 3lnc_A Guanylate kinase, GMP k 93.1 0.034 1.2E-06 53.1 2.3 33 213-247 16-48 (231)
84 3vaa_A Shikimate kinase, SK; s 93.1 0.054 1.9E-06 50.6 3.6 28 222-249 21-48 (199)
85 2ff7_A Alpha-hemolysin translo 93.1 0.044 1.5E-06 53.9 3.1 27 220-246 29-55 (247)
86 3uk6_A RUVB-like 2; hexameric 93.0 0.18 6.1E-06 51.1 7.6 25 226-250 70-94 (368)
87 2zu0_C Probable ATP-dependent 93.0 0.051 1.7E-06 54.1 3.3 27 220-246 40-66 (267)
88 2eyu_A Twitching motility prot 93.0 0.062 2.1E-06 53.3 4.0 33 217-250 17-49 (261)
89 2jeo_A Uridine-cytidine kinase 93.0 0.048 1.6E-06 52.8 3.0 27 221-247 20-46 (245)
90 2d2e_A SUFC protein; ABC-ATPas 93.0 0.051 1.7E-06 53.4 3.3 28 219-246 22-49 (250)
91 1b0u_A Histidine permease; ABC 93.0 0.049 1.7E-06 54.0 3.2 28 219-246 25-52 (262)
92 3gfo_A Cobalt import ATP-bindi 92.9 0.049 1.7E-06 54.7 3.1 27 220-246 28-54 (275)
93 4g1u_C Hemin import ATP-bindin 92.9 0.049 1.7E-06 54.3 3.0 27 220-246 31-57 (266)
94 1g6h_A High-affinity branched- 92.8 0.052 1.8E-06 53.6 3.1 28 219-246 26-53 (257)
95 3pvs_A Replication-associated 92.8 0.11 3.6E-06 55.7 5.7 22 227-248 51-72 (447)
96 2pze_A Cystic fibrosis transme 92.8 0.054 1.8E-06 52.6 3.1 26 221-246 29-54 (229)
97 1sgw_A Putative ABC transporte 92.8 0.053 1.8E-06 52.4 3.0 25 221-245 30-54 (214)
98 1j8m_F SRP54, signal recogniti 92.7 0.79 2.7E-05 46.2 11.8 39 225-264 97-135 (297)
99 1ji0_A ABC transporter; ATP bi 92.7 0.055 1.9E-06 52.9 3.1 25 221-245 27-51 (240)
100 2ghi_A Transport protein; mult 92.7 0.056 1.9E-06 53.6 3.2 26 221-246 41-66 (260)
101 2olj_A Amino acid ABC transpor 92.7 0.056 1.9E-06 53.9 3.2 30 219-249 43-72 (263)
102 1mv5_A LMRA, multidrug resista 92.7 0.054 1.8E-06 53.0 3.0 26 221-246 23-48 (243)
103 1vpl_A ABC transporter, ATP-bi 92.7 0.057 1.9E-06 53.6 3.2 27 220-246 35-61 (256)
104 3b9q_A Chloroplast SRP recepto 92.6 0.11 3.8E-06 52.7 5.3 30 222-251 96-125 (302)
105 2ihy_A ABC transporter, ATP-bi 92.6 0.05 1.7E-06 54.6 2.7 30 219-249 40-69 (279)
106 3asz_A Uridine kinase; cytidin 92.6 0.053 1.8E-06 50.7 2.7 26 223-248 3-28 (211)
107 3uie_A Adenylyl-sulfate kinase 92.6 0.11 3.6E-06 48.6 4.8 27 224-250 23-49 (200)
108 2ixe_A Antigen peptide transpo 92.6 0.059 2E-06 53.8 3.2 27 220-246 39-65 (271)
109 2i3b_A HCR-ntpase, human cance 92.6 0.059 2E-06 51.0 3.0 26 226-251 1-26 (189)
110 2qi9_C Vitamin B12 import ATP- 92.5 0.06 2E-06 53.2 3.1 27 220-246 20-46 (249)
111 1zu4_A FTSY; GTPase, signal re 92.4 0.86 2.9E-05 46.5 11.7 43 222-265 101-143 (320)
112 2qt1_A Nicotinamide riboside k 92.4 0.065 2.2E-06 50.1 3.0 28 220-247 15-42 (207)
113 3ney_A 55 kDa erythrocyte memb 92.4 0.078 2.7E-06 50.9 3.6 28 221-248 14-41 (197)
114 2yz2_A Putative ABC transporte 92.4 0.066 2.3E-06 53.2 3.2 29 220-249 27-55 (266)
115 2nq2_C Hypothetical ABC transp 92.3 0.064 2.2E-06 53.0 3.0 26 221-246 26-51 (253)
116 3bos_A Putative DNA replicatio 92.3 0.14 4.9E-06 47.8 5.3 35 217-251 43-77 (242)
117 3fvq_A Fe(3+) IONS import ATP- 92.3 0.064 2.2E-06 56.1 3.1 34 215-249 18-52 (359)
118 1rz3_A Hypothetical protein rb 92.3 0.13 4.6E-06 48.1 5.1 29 222-250 18-46 (201)
119 3b85_A Phosphate starvation-in 92.3 0.054 1.8E-06 52.0 2.3 25 223-247 19-43 (208)
120 1sq5_A Pantothenate kinase; P- 92.2 0.11 3.6E-06 52.6 4.5 27 222-248 76-102 (308)
121 1ls1_A Signal recognition part 92.2 1.2 4E-05 44.8 12.2 41 225-266 97-137 (295)
122 1y63_A LMAJ004144AAA protein; 92.1 0.095 3.3E-06 48.4 3.7 27 222-248 6-32 (184)
123 3rlf_A Maltose/maltodextrin im 92.0 0.078 2.7E-06 55.9 3.3 31 218-249 21-51 (381)
124 1iqp_A RFCS; clamp loader, ext 92.0 0.24 8.3E-06 48.7 6.8 26 225-250 45-70 (327)
125 1rj9_A FTSY, signal recognitio 92.0 0.15 5E-06 51.9 5.2 28 224-251 100-127 (304)
126 3dm5_A SRP54, signal recogniti 91.9 0.8 2.7E-05 49.1 11.2 29 225-253 99-127 (443)
127 1z47_A CYSA, putative ABC-tran 91.9 0.079 2.7E-06 55.3 3.3 32 218-250 33-64 (355)
128 2yyz_A Sugar ABC transporter, 91.9 0.081 2.8E-06 55.2 3.4 32 218-250 21-52 (359)
129 2it1_A 362AA long hypothetical 91.9 0.082 2.8E-06 55.3 3.3 31 218-249 21-51 (362)
130 1v43_A Sugar-binding transport 91.8 0.085 2.9E-06 55.4 3.3 32 218-250 29-60 (372)
131 1vt4_I APAF-1 related killer D 91.8 0.49 1.7E-05 56.3 9.9 53 226-279 150-204 (1221)
132 1g29_1 MALK, maltose transport 91.7 0.086 2.9E-06 55.3 3.3 32 218-250 21-52 (372)
133 3a00_A Guanylate kinase, GMP k 91.7 0.085 2.9E-06 48.8 2.9 24 226-249 1-24 (186)
134 2kjq_A DNAA-related protein; s 91.7 0.1 3.5E-06 47.2 3.3 26 225-250 35-60 (149)
135 1s96_A Guanylate kinase, GMP k 91.7 0.089 3E-06 50.8 3.1 26 223-248 13-38 (219)
136 2z0h_A DTMP kinase, thymidylat 91.6 0.33 1.1E-05 44.3 6.7 50 228-279 2-51 (197)
137 3tau_A Guanylate kinase, GMP k 91.5 0.1 3.5E-06 49.3 3.3 25 224-248 6-30 (208)
138 2og2_A Putative signal recogni 91.5 0.17 5.9E-06 52.7 5.3 30 222-251 153-182 (359)
139 1knq_A Gluconate kinase; ALFA/ 91.5 0.11 3.7E-06 47.1 3.3 25 224-248 6-30 (175)
140 3gd7_A Fusion complex of cysti 91.5 0.09 3.1E-06 55.5 3.1 27 220-246 41-67 (390)
141 2bbs_A Cystic fibrosis transme 91.5 0.089 3E-06 53.2 3.0 26 221-246 59-84 (290)
142 3sfz_A APAF-1, apoptotic pepti 91.4 0.082 2.8E-06 61.6 3.1 40 227-266 148-190 (1249)
143 2chg_A Replication factor C sm 91.4 0.25 8.6E-06 45.0 5.8 26 225-250 37-62 (226)
144 1kag_A SKI, shikimate kinase I 91.4 0.11 3.6E-06 46.8 3.2 24 225-248 3-26 (173)
145 1jbk_A CLPB protein; beta barr 91.4 0.13 4.4E-06 45.8 3.7 28 224-251 41-68 (195)
146 3tui_C Methionine import ATP-b 91.4 0.099 3.4E-06 54.8 3.3 36 214-250 41-77 (366)
147 1t9h_A YLOQ, probable GTPase E 91.4 0.04 1.4E-06 56.4 0.3 31 217-247 164-194 (307)
148 1nn5_A Similar to deoxythymidy 91.3 0.32 1.1E-05 45.0 6.5 28 223-250 6-33 (215)
149 3nh6_A ATP-binding cassette SU 91.3 0.068 2.3E-06 54.6 1.9 27 220-246 74-100 (306)
150 2qor_A Guanylate kinase; phosp 91.2 0.12 4.2E-06 48.3 3.5 27 223-249 9-35 (204)
151 3d31_A Sulfate/molybdate ABC t 91.2 0.074 2.5E-06 55.3 2.1 31 219-250 19-49 (348)
152 3aez_A Pantothenate kinase; tr 91.1 0.1 3.5E-06 53.2 3.1 26 222-247 86-111 (312)
153 1ye8_A Protein THEP1, hypothet 91.1 0.1 3.5E-06 48.7 2.8 22 228-249 2-23 (178)
154 2x8a_A Nuclear valosin-contain 91.1 0.1 3.5E-06 51.9 2.9 24 222-247 42-65 (274)
155 2pjz_A Hypothetical protein ST 91.1 0.097 3.3E-06 52.1 2.8 25 221-246 26-50 (263)
156 1ixz_A ATP-dependent metallopr 91.0 0.11 3.6E-06 50.3 2.9 25 222-248 47-71 (254)
157 3kl4_A SRP54, signal recogniti 90.9 1 3.5E-05 48.1 10.7 29 225-253 96-124 (433)
158 2yv5_A YJEQ protein; hydrolase 90.8 0.083 2.9E-06 53.4 2.0 31 217-247 156-186 (302)
159 1jr3_A DNA polymerase III subu 90.7 0.36 1.2E-05 48.6 6.6 23 228-250 40-62 (373)
160 1oxx_K GLCV, glucose, ABC tran 90.6 0.073 2.5E-06 55.4 1.4 31 219-250 24-54 (353)
161 2bdt_A BH3686; alpha-beta prot 90.6 0.11 3.8E-06 47.7 2.5 22 226-247 2-23 (189)
162 3cm0_A Adenylate kinase; ATP-b 90.6 0.13 4.6E-06 46.7 3.1 25 225-249 3-27 (186)
163 2gj8_A MNME, tRNA modification 90.5 0.12 4.1E-06 46.8 2.6 24 225-248 3-26 (172)
164 1cke_A CK, MSSA, protein (cyti 90.4 0.17 5.9E-06 47.5 3.7 23 226-248 5-27 (227)
165 2orw_A Thymidine kinase; TMTK, 90.3 0.25 8.5E-06 46.2 4.7 29 225-253 2-30 (184)
166 1lw7_A Transcriptional regulat 90.3 0.12 4.1E-06 53.3 2.7 27 222-248 164-192 (365)
167 2bbw_A Adenylate kinase 4, AK4 90.3 0.15 5E-06 49.3 3.1 24 225-248 26-49 (246)
168 1a5t_A Delta prime, HOLB; zinc 90.2 0.57 2E-05 47.5 7.6 22 229-250 27-48 (334)
169 2wwf_A Thymidilate kinase, put 90.2 0.32 1.1E-05 45.0 5.3 28 223-250 7-34 (212)
170 2w58_A DNAI, primosome compone 90.2 0.29 1E-05 45.2 5.0 25 227-251 55-79 (202)
171 2ewv_A Twitching motility prot 90.1 0.24 8.3E-06 51.6 4.9 29 223-251 133-161 (372)
172 1iy2_A ATP-dependent metallopr 90.1 0.14 4.9E-06 50.3 2.9 25 222-248 71-95 (278)
173 2pbr_A DTMP kinase, thymidylat 90.0 0.54 1.8E-05 42.6 6.6 23 228-250 2-24 (195)
174 2ffh_A Protein (FFH); SRP54, s 90.0 2 6.9E-05 45.7 12.0 29 225-253 97-125 (425)
175 2npi_A Protein CLP1; CLP1-PCF1 89.9 0.16 5.3E-06 54.8 3.3 33 219-252 131-163 (460)
176 3jvv_A Twitching mobility prot 89.9 0.31 1.1E-05 50.7 5.4 29 223-251 120-148 (356)
177 2p65_A Hypothetical protein PF 89.8 0.16 5.4E-06 45.3 2.8 28 224-251 41-68 (187)
178 2onk_A Molybdate/tungstate ABC 89.8 0.17 5.9E-06 49.5 3.2 29 219-249 18-46 (240)
179 2qby_B CDC6 homolog 3, cell di 89.7 0.26 9E-06 49.9 4.7 28 224-251 43-70 (384)
180 3upu_A ATP-dependent DNA helic 89.6 0.14 4.9E-06 54.4 2.6 26 228-253 47-72 (459)
181 1sxj_B Activator 1 37 kDa subu 89.5 0.37 1.3E-05 47.3 5.4 24 227-250 43-66 (323)
182 3iij_A Coilin-interacting nucl 89.5 0.22 7.7E-06 45.2 3.6 26 224-249 9-34 (180)
183 4e22_A Cytidylate kinase; P-lo 89.4 0.19 6.3E-06 49.1 3.1 24 224-247 25-48 (252)
184 2yvu_A Probable adenylyl-sulfa 89.4 0.41 1.4E-05 43.8 5.3 29 223-251 10-38 (186)
185 1kht_A Adenylate kinase; phosp 89.3 0.23 7.9E-06 45.0 3.5 26 225-250 2-27 (192)
186 2p67_A LAO/AO transport system 89.3 0.37 1.3E-05 49.3 5.4 42 221-262 51-92 (341)
187 2www_A Methylmalonic aciduria 89.3 0.36 1.2E-05 49.8 5.3 36 226-261 74-109 (349)
188 1u0l_A Probable GTPase ENGC; p 89.3 0.12 4E-06 52.1 1.6 30 217-246 160-189 (301)
189 2px0_A Flagellar biosynthesis 89.3 0.59 2E-05 47.1 6.8 29 224-252 103-131 (296)
190 2f9l_A RAB11B, member RAS onco 89.1 0.2 6.9E-06 46.1 3.0 21 228-248 7-27 (199)
191 4eaq_A DTMP kinase, thymidylat 89.1 0.37 1.3E-05 46.6 4.9 34 217-250 16-50 (229)
192 2qp9_X Vacuolar protein sortin 88.9 1.3 4.5E-05 45.4 9.2 22 228-249 86-107 (355)
193 1yqt_A RNAse L inhibitor; ATP- 88.8 0.25 8.5E-06 54.1 4.0 31 216-246 37-67 (538)
194 3j16_B RLI1P; ribosome recycli 88.8 0.25 8.5E-06 55.1 4.0 31 216-246 93-123 (608)
195 3kb2_A SPBC2 prophage-derived 88.8 0.23 7.7E-06 44.2 3.0 22 228-249 3-24 (173)
196 1r8s_A ADP-ribosylation factor 88.7 0.25 8.5E-06 43.2 3.2 22 228-249 2-23 (164)
197 1oix_A RAS-related protein RAB 88.7 0.21 7.1E-06 46.0 2.8 21 228-248 31-51 (191)
198 2rcn_A Probable GTPase ENGC; Y 88.6 0.14 4.9E-06 53.5 1.8 31 217-247 206-236 (358)
199 1kao_A RAP2A; GTP-binding prot 88.5 0.2 7E-06 43.5 2.5 22 228-249 5-26 (167)
200 2wji_A Ferrous iron transport 88.5 0.23 7.9E-06 44.3 2.8 21 228-248 5-25 (165)
201 2dyk_A GTP-binding protein; GT 88.4 0.25 8.6E-06 42.9 3.0 21 228-248 3-23 (161)
202 4b4t_J 26S protease regulatory 88.3 0.77 2.6E-05 48.8 7.2 21 229-249 185-205 (405)
203 2r8r_A Sensor protein; KDPD, P 88.3 0.47 1.6E-05 46.6 5.1 37 228-266 8-45 (228)
204 2gza_A Type IV secretion syste 88.3 0.13 4.5E-06 53.2 1.2 29 220-248 169-197 (361)
205 3b5x_A Lipid A export ATP-bind 88.2 0.2 6.8E-06 55.1 2.6 28 220-247 363-390 (582)
206 2pez_A Bifunctional 3'-phospho 88.1 0.27 9.3E-06 44.7 3.1 26 225-250 4-29 (179)
207 2nzj_A GTP-binding protein REM 88.0 0.25 8.7E-06 43.6 2.8 21 228-248 6-26 (175)
208 2plr_A DTMP kinase, probable t 88.0 0.31 1E-05 44.9 3.5 26 225-250 3-28 (213)
209 1z2a_A RAS-related protein RAB 88.0 0.28 9.5E-06 42.9 3.0 22 228-249 7-28 (168)
210 2zej_A Dardarin, leucine-rich 88.0 0.21 7.3E-06 45.4 2.3 21 228-248 4-24 (184)
211 3fb4_A Adenylate kinase; psych 87.9 0.3 1E-05 45.6 3.4 22 228-249 2-23 (216)
212 1u8z_A RAS-related protein RAL 87.8 0.24 8.2E-06 43.1 2.5 22 228-249 6-27 (168)
213 3trf_A Shikimate kinase, SK; a 87.8 0.34 1.2E-05 44.0 3.6 24 226-249 5-28 (185)
214 1ek0_A Protein (GTP-binding pr 87.7 0.25 8.5E-06 43.2 2.5 22 228-249 5-26 (170)
215 3dl0_A Adenylate kinase; phosp 87.6 0.3 1E-05 45.7 3.2 21 228-248 2-22 (216)
216 3h4m_A Proteasome-activating n 87.6 0.33 1.1E-05 47.3 3.6 26 224-249 49-74 (285)
217 1z08_A RAS-related protein RAB 87.6 0.24 8.2E-06 43.5 2.4 22 228-249 8-29 (170)
218 1c1y_A RAS-related protein RAP 87.5 0.31 1.1E-05 42.5 3.0 21 228-248 5-25 (167)
219 3lw7_A Adenylate kinase relate 87.5 0.26 8.8E-06 43.5 2.5 19 228-246 3-21 (179)
220 2ce2_X GTPase HRAS; signaling 87.4 0.29 1E-05 42.3 2.8 22 228-249 5-26 (166)
221 3u61_B DNA polymerase accessor 87.4 0.54 1.8E-05 46.8 5.1 23 227-249 48-71 (324)
222 1p9r_A General secretion pathw 87.3 0.39 1.3E-05 51.0 4.2 28 223-250 164-191 (418)
223 1qhx_A CPT, protein (chloramph 87.3 0.37 1.3E-05 43.4 3.5 24 226-249 3-26 (178)
224 1yqt_A RNAse L inhibitor; ATP- 87.2 0.28 9.6E-06 53.7 3.1 25 222-246 308-332 (538)
225 1zuh_A Shikimate kinase; alpha 87.2 0.36 1.2E-05 43.3 3.3 23 227-249 8-30 (168)
226 1r2q_A RAS-related protein RAB 87.1 0.33 1.1E-05 42.3 3.0 22 228-249 8-29 (170)
227 2wjg_A FEOB, ferrous iron tran 87.1 0.31 1.1E-05 43.9 2.8 21 228-248 9-29 (188)
228 2vp4_A Deoxynucleoside kinase; 87.1 0.22 7.5E-06 47.7 1.9 26 221-246 15-40 (230)
229 3b60_A Lipid A export ATP-bind 87.1 0.27 9.3E-06 54.0 2.9 27 220-246 363-389 (582)
230 1tev_A UMP-CMP kinase; ploop, 87.1 0.35 1.2E-05 43.8 3.2 24 226-249 3-26 (196)
231 3q85_A GTP-binding protein REM 87.1 0.32 1.1E-05 42.7 2.8 20 228-247 4-23 (169)
232 2yl4_A ATP-binding cassette SU 87.0 0.28 9.4E-06 54.1 2.9 28 219-246 363-390 (595)
233 1wms_A RAB-9, RAB9, RAS-relate 87.0 0.28 9.6E-06 43.5 2.5 21 228-248 9-29 (177)
234 2c95_A Adenylate kinase 1; tra 87.0 0.38 1.3E-05 43.8 3.4 26 224-249 7-32 (196)
235 3nwj_A ATSK2; P loop, shikimat 87.0 0.28 9.5E-06 48.5 2.6 28 221-248 40-70 (250)
236 2if2_A Dephospho-COA kinase; a 86.9 0.3 1E-05 45.2 2.8 20 228-247 3-22 (204)
237 1g16_A RAS-related protein SEC 86.9 0.32 1.1E-05 42.5 2.8 21 228-248 5-25 (170)
238 1ky3_A GTP-binding protein YPT 86.9 0.34 1.2E-05 42.9 3.0 21 228-248 10-30 (182)
239 1lv7_A FTSH; alpha/beta domain 86.9 0.34 1.2E-05 46.7 3.2 20 229-248 48-67 (257)
240 1njg_A DNA polymerase III subu 86.9 0.36 1.2E-05 44.3 3.2 24 228-251 47-70 (250)
241 2v54_A DTMP kinase, thymidylat 86.9 0.37 1.3E-05 44.3 3.3 24 225-248 3-26 (204)
242 2b8t_A Thymidine kinase; deoxy 86.8 0.64 2.2E-05 45.2 5.1 30 224-253 10-39 (223)
243 3bk7_A ABC transporter ATP-bin 86.8 0.37 1.3E-05 53.6 3.8 31 216-246 107-137 (607)
244 3ihw_A Centg3; RAS, centaurin, 86.8 0.29 9.8E-06 44.8 2.4 22 228-249 22-43 (184)
245 1z0j_A RAB-22, RAS-related pro 86.8 0.36 1.2E-05 42.3 3.0 22 228-249 8-29 (170)
246 3cf0_A Transitional endoplasmi 86.7 0.39 1.3E-05 48.0 3.6 25 224-248 47-71 (301)
247 1zd8_A GTP:AMP phosphotransfer 86.7 0.35 1.2E-05 45.8 3.1 25 224-248 5-29 (227)
248 2erx_A GTP-binding protein DI- 86.7 0.34 1.2E-05 42.3 2.8 21 228-248 5-25 (172)
249 3bc1_A RAS-related protein RAB 86.6 0.36 1.2E-05 43.1 3.0 21 228-248 13-33 (195)
250 4a82_A Cystic fibrosis transme 86.6 0.28 9.5E-06 54.0 2.7 26 220-245 361-386 (578)
251 1svm_A Large T antigen; AAA+ f 86.6 0.32 1.1E-05 51.1 2.9 28 221-248 164-191 (377)
252 1mh1_A RAC1; GTP-binding, GTPa 86.5 0.31 1.1E-05 43.4 2.5 22 228-249 7-28 (186)
253 3qf4_B Uncharacterized ABC tra 86.5 0.31 1.1E-05 53.9 2.9 26 221-246 376-401 (598)
254 2jaq_A Deoxyguanosine kinase; 86.5 0.41 1.4E-05 43.8 3.3 22 228-249 2-23 (205)
255 1m2o_B GTP-binding protein SAR 86.5 0.35 1.2E-05 44.3 2.9 24 225-248 22-45 (190)
256 2rhm_A Putative kinase; P-loop 86.5 0.42 1.4E-05 43.4 3.4 25 225-249 4-28 (193)
257 2gno_A DNA polymerase III, gam 86.4 1.2 4.3E-05 44.9 7.2 35 227-261 19-56 (305)
258 1xjc_A MOBB protein homolog; s 86.4 0.71 2.4E-05 43.1 5.0 25 228-252 6-30 (169)
259 1odf_A YGR205W, hypothetical 3 86.4 0.36 1.2E-05 48.6 3.2 27 223-249 28-54 (290)
260 2xxa_A Signal recognition part 86.4 3.7 0.00013 43.7 11.1 45 226-270 100-145 (433)
261 1upt_A ARL1, ADP-ribosylation 86.4 0.32 1.1E-05 42.7 2.5 24 225-248 6-29 (171)
262 3q72_A GTP-binding protein RAD 86.4 0.32 1.1E-05 42.6 2.4 20 228-247 4-23 (166)
263 2fn4_A P23, RAS-related protei 86.3 0.36 1.2E-05 42.7 2.8 22 228-249 11-32 (181)
264 4dsu_A GTPase KRAS, isoform 2B 86.3 0.32 1.1E-05 43.5 2.5 22 228-249 6-27 (189)
265 1qvr_A CLPB protein; coiled co 86.3 1.2 4.1E-05 51.2 7.8 28 224-251 189-216 (854)
266 1aky_A Adenylate kinase; ATP:A 86.3 0.46 1.6E-05 44.7 3.6 25 225-249 3-27 (220)
267 2hxs_A RAB-26, RAS-related pro 86.3 0.31 1.1E-05 43.2 2.3 21 228-248 8-28 (178)
268 3clv_A RAB5 protein, putative; 86.1 0.39 1.3E-05 43.0 3.0 22 228-249 9-30 (208)
269 2ged_A SR-beta, signal recogni 86.1 0.39 1.3E-05 43.4 3.0 22 227-248 49-70 (193)
270 3lv8_A DTMP kinase, thymidylat 86.1 4 0.00014 39.8 10.4 52 225-278 26-78 (236)
271 3dz8_A RAS-related protein RAB 86.1 0.39 1.3E-05 43.7 3.0 22 228-249 25-46 (191)
272 3c5c_A RAS-like protein 12; GD 86.1 0.33 1.1E-05 44.3 2.5 22 228-249 23-44 (187)
273 2pt7_A CAG-ALFA; ATPase, prote 86.1 0.16 5.5E-06 52.1 0.4 28 221-248 166-193 (330)
274 1jjv_A Dephospho-COA kinase; P 86.0 0.37 1.3E-05 44.7 2.8 19 228-246 4-22 (206)
275 3qf4_A ABC transporter, ATP-bi 86.0 0.32 1.1E-05 53.6 2.8 26 221-246 364-389 (587)
276 3t61_A Gluconokinase; PSI-biol 86.0 0.45 1.5E-05 44.1 3.4 23 227-249 19-41 (202)
277 2iyv_A Shikimate kinase, SK; t 86.0 0.44 1.5E-05 43.3 3.2 23 227-249 3-25 (184)
278 1z0f_A RAB14, member RAS oncog 86.0 0.41 1.4E-05 42.2 3.0 22 228-249 17-38 (179)
279 2j37_W Signal recognition part 85.9 5.8 0.0002 43.1 12.6 29 225-253 100-128 (504)
280 2iwr_A Centaurin gamma 1; ANK 85.9 0.25 8.6E-06 44.0 1.5 22 228-249 9-30 (178)
281 4b4t_M 26S protease regulatory 85.9 0.58 2E-05 50.1 4.6 22 228-249 217-238 (434)
282 4edh_A DTMP kinase, thymidylat 85.9 1.3 4.3E-05 42.5 6.6 54 225-280 5-58 (213)
283 4b4t_L 26S protease subunit RP 85.8 0.59 2E-05 50.1 4.6 22 228-249 217-238 (437)
284 3kkq_A RAS-related protein M-R 85.8 0.35 1.2E-05 43.3 2.5 22 228-249 20-41 (183)
285 1ukz_A Uridylate kinase; trans 85.8 0.49 1.7E-05 43.7 3.5 24 225-248 14-37 (203)
286 1ly1_A Polynucleotide kinase; 85.8 0.4 1.4E-05 42.9 2.9 21 228-248 4-24 (181)
287 2r62_A Cell division protease 85.8 0.41 1.4E-05 46.2 3.1 21 229-249 47-67 (268)
288 2y8e_A RAB-protein 6, GH09086P 85.8 0.4 1.4E-05 42.3 2.8 21 228-248 16-36 (179)
289 2a9k_A RAS-related protein RAL 85.7 0.36 1.2E-05 43.0 2.5 21 228-248 20-40 (187)
290 2bwj_A Adenylate kinase 5; pho 85.7 0.41 1.4E-05 43.7 2.9 26 224-249 10-35 (199)
291 3bwd_D RAC-like GTP-binding pr 85.7 0.36 1.2E-05 42.9 2.5 22 227-248 9-30 (182)
292 2cdn_A Adenylate kinase; phosp 85.7 0.52 1.8E-05 43.6 3.6 25 225-249 19-43 (201)
293 3b9p_A CG5977-PA, isoform A; A 85.7 0.45 1.6E-05 46.7 3.4 23 226-248 54-76 (297)
294 1m7b_A RND3/RHOE small GTP-bin 85.7 0.33 1.1E-05 43.9 2.3 22 228-249 9-30 (184)
295 3ozx_A RNAse L inhibitor; ATP 85.7 0.36 1.2E-05 52.9 2.9 25 222-246 290-314 (538)
296 3con_A GTPase NRAS; structural 85.7 0.36 1.2E-05 43.6 2.5 22 228-249 23-44 (190)
297 2qgz_A Helicase loader, putati 85.7 0.78 2.7E-05 46.3 5.2 27 225-251 151-177 (308)
298 2oil_A CATX-8, RAS-related pro 85.6 0.43 1.5E-05 43.2 3.0 22 228-249 27-48 (193)
299 4b4t_K 26S protease regulatory 85.6 0.62 2.1E-05 49.8 4.6 29 229-262 209-237 (428)
300 2cxx_A Probable GTP-binding pr 85.6 0.37 1.3E-05 43.2 2.5 21 228-248 3-23 (190)
301 3bk7_A ABC transporter ATP-bin 85.6 0.38 1.3E-05 53.5 3.1 25 222-246 378-402 (607)
302 3syl_A Protein CBBX; photosynt 85.5 0.51 1.7E-05 46.5 3.7 26 225-250 66-91 (309)
303 2g6b_A RAS-related protein RAB 85.5 0.38 1.3E-05 42.7 2.5 22 228-249 12-33 (180)
304 2bme_A RAB4A, RAS-related prot 85.4 0.35 1.2E-05 43.3 2.3 22 228-249 12-33 (186)
305 1nks_A Adenylate kinase; therm 85.4 0.75 2.6E-05 41.5 4.5 23 228-250 3-25 (194)
306 2efe_B Small GTP-binding prote 85.4 0.45 1.5E-05 42.3 3.0 22 228-249 14-35 (181)
307 3ux8_A Excinuclease ABC, A sub 85.4 0.32 1.1E-05 54.4 2.4 23 221-243 39-61 (670)
308 3t15_A Ribulose bisphosphate c 85.4 0.41 1.4E-05 47.8 2.9 21 229-249 39-59 (293)
309 2vli_A Antibiotic resistance p 85.3 0.41 1.4E-05 43.2 2.7 24 225-248 4-27 (183)
310 2qag_B Septin-6, protein NEDD5 85.3 0.4 1.4E-05 51.2 3.0 27 221-247 35-63 (427)
311 2cjw_A GTP-binding protein GEM 85.3 0.48 1.7E-05 43.6 3.2 21 228-248 8-28 (192)
312 3t5g_A GTP-binding protein RHE 85.2 0.36 1.2E-05 43.1 2.3 22 228-249 8-29 (181)
313 1via_A Shikimate kinase; struc 85.2 0.5 1.7E-05 42.7 3.2 22 228-249 6-27 (175)
314 1np6_A Molybdopterin-guanine d 85.2 0.84 2.9E-05 42.5 4.8 25 227-251 7-31 (174)
315 3be4_A Adenylate kinase; malar 85.1 0.53 1.8E-05 44.4 3.4 25 225-249 4-28 (217)
316 2bov_A RAla, RAS-related prote 85.1 0.4 1.4E-05 43.7 2.5 22 228-249 16-37 (206)
317 3n70_A Transport activator; si 84.9 0.53 1.8E-05 41.7 3.1 22 225-246 23-44 (145)
318 2hf9_A Probable hydrogenase ni 84.8 0.6 2E-05 43.6 3.7 25 227-251 39-63 (226)
319 1hqc_A RUVB; extended AAA-ATPa 84.8 1.8 6.2E-05 42.6 7.4 24 226-249 38-61 (324)
320 3pqc_A Probable GTP-binding pr 84.7 0.43 1.5E-05 42.9 2.5 22 228-249 25-46 (195)
321 3tw8_B RAS-related protein RAB 84.7 0.45 1.5E-05 42.1 2.6 21 228-248 11-31 (181)
322 4b3f_X DNA-binding protein smu 84.7 0.74 2.5E-05 51.1 4.9 49 228-279 207-255 (646)
323 2iw3_A Elongation factor 3A; a 84.7 0.45 1.5E-05 55.9 3.3 29 219-247 454-482 (986)
324 3sop_A Neuronal-specific septi 84.7 0.43 1.5E-05 47.5 2.7 21 228-248 4-24 (270)
325 4dkx_A RAS-related protein RAB 84.6 0.41 1.4E-05 45.8 2.5 22 228-249 15-36 (216)
326 3tkl_A RAS-related protein RAB 84.6 0.52 1.8E-05 42.6 3.0 21 228-248 18-38 (196)
327 3t1o_A Gliding protein MGLA; G 84.6 0.52 1.8E-05 42.3 3.0 21 228-249 16-36 (198)
328 1ni3_A YCHF GTPase, YCHF GTP-b 84.6 0.5 1.7E-05 49.9 3.3 29 220-248 14-42 (392)
329 2qz4_A Paraplegin; AAA+, SPG7, 84.5 0.64 2.2E-05 44.4 3.8 23 227-249 40-62 (262)
330 2gf9_A RAS-related protein RAB 84.5 0.52 1.8E-05 42.6 3.0 22 228-249 24-45 (189)
331 1ex7_A Guanylate kinase; subst 84.5 0.52 1.8E-05 44.6 3.0 21 229-249 4-24 (186)
332 1in4_A RUVB, holliday junction 84.5 0.53 1.8E-05 47.7 3.4 22 227-248 52-73 (334)
333 2p5t_B PEZT; postsegregational 84.5 0.42 1.5E-05 46.4 2.5 27 222-248 28-54 (253)
334 1m7g_A Adenylylsulfate kinase; 84.5 0.62 2.1E-05 43.7 3.6 28 223-250 22-49 (211)
335 1vg8_A RAS-related protein RAB 84.4 0.52 1.8E-05 43.0 3.0 22 228-249 10-31 (207)
336 2lkc_A Translation initiation 84.4 0.57 1.9E-05 41.5 3.1 24 225-248 7-30 (178)
337 1q3t_A Cytidylate kinase; nucl 84.3 0.63 2.2E-05 44.5 3.7 25 224-248 14-38 (236)
338 3tlx_A Adenylate kinase 2; str 84.3 0.59 2E-05 45.3 3.5 25 225-249 28-52 (243)
339 3reg_A RHO-like small GTPase; 84.3 0.45 1.5E-05 43.3 2.5 22 228-249 25-46 (194)
340 2a5j_A RAS-related protein RAB 84.3 0.45 1.5E-05 43.2 2.5 21 228-248 23-43 (191)
341 2fh5_B SR-beta, signal recogni 84.3 0.45 1.5E-05 44.0 2.5 22 228-249 9-30 (214)
342 1z06_A RAS-related protein RAB 84.2 0.54 1.9E-05 42.5 3.0 21 228-248 22-42 (189)
343 1zd9_A ADP-ribosylation factor 84.2 0.55 1.9E-05 42.6 3.0 22 228-249 24-45 (188)
344 1svi_A GTP-binding protein YSX 84.2 0.47 1.6E-05 42.9 2.5 23 227-249 24-46 (195)
345 1nrj_B SR-beta, signal recogni 84.0 0.55 1.9E-05 43.5 3.0 22 228-249 14-35 (218)
346 2oap_1 GSPE-2, type II secreti 84.0 0.25 8.5E-06 53.9 0.7 28 221-248 255-282 (511)
347 1ofh_A ATP-dependent HSL prote 84.0 0.63 2.2E-05 45.4 3.5 25 225-249 49-73 (310)
348 1x3s_A RAS-related protein RAB 84.0 0.57 2E-05 42.1 3.0 22 228-249 17-38 (195)
349 1ega_A Protein (GTP-binding pr 84.0 0.43 1.5E-05 48.0 2.3 25 224-248 6-30 (301)
350 2atv_A RERG, RAS-like estrogen 84.0 0.56 1.9E-05 42.8 3.0 39 210-249 13-51 (196)
351 2fg5_A RAB-22B, RAS-related pr 83.9 0.53 1.8E-05 42.9 2.8 22 228-249 25-46 (192)
352 2p5s_A RAS and EF-hand domain 83.8 0.47 1.6E-05 43.5 2.4 21 228-248 30-50 (199)
353 4b4t_I 26S protease regulatory 83.7 0.86 2.9E-05 48.9 4.6 31 229-264 219-249 (437)
354 1zak_A Adenylate kinase; ATP:A 83.6 0.66 2.2E-05 43.7 3.4 25 225-249 4-28 (222)
355 2pt5_A Shikimate kinase, SK; a 83.6 0.68 2.3E-05 41.2 3.3 21 228-248 2-22 (168)
356 3ux8_A Excinuclease ABC, A sub 83.5 0.43 1.5E-05 53.3 2.4 28 220-247 342-369 (670)
357 2fu5_C RAS-related protein RAB 83.5 0.36 1.2E-05 43.2 1.4 22 228-249 10-31 (183)
358 3kta_A Chromosome segregation 83.5 0.57 2E-05 42.4 2.8 24 220-244 21-44 (182)
359 1zbd_A Rabphilin-3A; G protein 83.5 0.57 2E-05 42.8 2.8 21 228-248 10-30 (203)
360 1e6c_A Shikimate kinase; phosp 83.3 0.65 2.2E-05 41.4 3.1 22 228-249 4-25 (173)
361 4fcw_A Chaperone protein CLPB; 83.3 0.75 2.6E-05 45.1 3.8 39 227-266 48-86 (311)
362 1fzq_A ADP-ribosylation factor 83.3 0.52 1.8E-05 42.7 2.4 21 227-247 17-37 (181)
363 2h17_A ADP-ribosylation factor 83.3 0.38 1.3E-05 43.3 1.5 21 228-248 23-43 (181)
364 2gf0_A GTP-binding protein DI- 83.3 0.58 2E-05 42.3 2.8 22 227-248 9-30 (199)
365 4f4c_A Multidrug resistance pr 83.2 0.46 1.6E-05 57.5 2.6 27 220-246 1099-1125(1321)
366 2grj_A Dephospho-COA kinase; T 83.2 0.86 3E-05 43.0 4.0 22 227-248 13-34 (192)
367 3oes_A GTPase rhebl1; small GT 83.2 0.59 2E-05 42.9 2.8 22 228-249 26-47 (201)
368 2qen_A Walker-type ATPase; unk 83.2 0.67 2.3E-05 45.8 3.4 24 226-249 31-54 (350)
369 1ak2_A Adenylate kinase isoenz 83.1 0.78 2.7E-05 43.7 3.7 25 225-249 15-39 (233)
370 1gvn_B Zeta; postsegregational 83.1 0.69 2.4E-05 46.2 3.5 27 222-248 29-55 (287)
371 3v9p_A DTMP kinase, thymidylat 83.1 1.5 5.3E-05 42.5 5.8 57 224-280 23-81 (227)
372 2q3h_A RAS homolog gene family 83.0 0.5 1.7E-05 43.1 2.2 22 228-249 22-43 (201)
373 1e4v_A Adenylate kinase; trans 83.0 0.66 2.3E-05 43.5 3.1 22 228-249 2-23 (214)
374 4gzl_A RAS-related C3 botulinu 83.0 0.5 1.7E-05 43.8 2.3 23 227-249 31-53 (204)
375 2atx_A Small GTP binding prote 83.0 0.51 1.7E-05 42.8 2.2 22 228-249 20-41 (194)
376 1xwi_A SKD1 protein; VPS4B, AA 82.9 0.61 2.1E-05 47.3 3.0 23 227-249 46-68 (322)
377 2o52_A RAS-related protein RAB 82.9 0.48 1.6E-05 43.7 2.0 22 228-249 27-48 (200)
378 3p32_A Probable GTPase RV1496/ 82.8 1.3 4.4E-05 45.4 5.5 30 224-253 77-106 (355)
379 1zj6_A ADP-ribosylation factor 82.8 0.59 2E-05 42.2 2.6 23 226-248 16-38 (187)
380 4bas_A ADP-ribosylation factor 82.8 0.6 2E-05 42.2 2.6 21 228-248 19-39 (199)
381 1gwn_A RHO-related GTP-binding 82.7 0.52 1.8E-05 44.0 2.3 22 228-249 30-51 (205)
382 2ew1_A RAS-related protein RAB 82.7 0.62 2.1E-05 43.4 2.8 22 228-249 28-49 (201)
383 3cbq_A GTP-binding protein REM 82.7 0.51 1.7E-05 43.5 2.1 19 228-246 25-43 (195)
384 2bcg_Y Protein YP2, GTP-bindin 82.6 0.64 2.2E-05 42.6 2.8 21 228-248 10-30 (206)
385 3r20_A Cytidylate kinase; stru 82.6 0.74 2.5E-05 45.1 3.3 23 227-249 10-32 (233)
386 1d2n_A N-ethylmaleimide-sensit 82.6 0.67 2.3E-05 45.1 3.1 25 225-249 63-87 (272)
387 1ksh_A ARF-like protein 2; sma 82.5 0.63 2.2E-05 41.8 2.7 24 225-248 17-40 (186)
388 1moz_A ARL1, ADP-ribosylation 82.4 0.43 1.5E-05 42.6 1.5 24 224-247 16-39 (183)
389 4ag6_A VIRB4 ATPase, type IV s 82.3 1.2 4.1E-05 46.0 5.0 48 225-276 34-81 (392)
390 1f6b_A SAR1; gtpases, N-termin 82.3 0.52 1.8E-05 43.5 2.0 22 226-247 25-46 (198)
391 3cph_A RAS-related protein SEC 82.2 0.73 2.5E-05 42.2 3.0 21 228-248 22-42 (213)
392 2qmh_A HPR kinase/phosphorylas 82.2 0.7 2.4E-05 44.7 2.9 24 225-248 33-56 (205)
393 1uf9_A TT1252 protein; P-loop, 82.1 0.71 2.4E-05 42.2 2.9 22 226-247 8-29 (203)
394 3q3j_B RHO-related GTP-binding 82.1 0.61 2.1E-05 43.7 2.5 22 228-249 29-50 (214)
395 2f7s_A C25KG, RAS-related prot 82.1 0.69 2.4E-05 42.8 2.8 21 228-248 27-47 (217)
396 3e1s_A Exodeoxyribonuclease V, 82.1 1.1 3.7E-05 49.5 4.8 28 225-252 203-230 (574)
397 4b4t_H 26S protease regulatory 82.0 1 3.5E-05 48.7 4.4 22 228-249 245-266 (467)
398 3eie_A Vacuolar protein sortin 82.0 0.69 2.4E-05 46.5 3.0 23 227-249 52-74 (322)
399 1qf9_A UMP/CMP kinase, protein 81.9 0.73 2.5E-05 41.6 2.8 22 227-248 7-28 (194)
400 2j0v_A RAC-like GTP-binding pr 81.8 0.59 2E-05 43.1 2.3 21 228-248 11-31 (212)
401 3m6a_A ATP-dependent protease 81.8 0.8 2.7E-05 50.0 3.6 25 225-249 107-131 (543)
402 2f1r_A Molybdopterin-guanine d 81.8 0.38 1.3E-05 44.7 0.9 24 227-250 3-26 (171)
403 2ze6_A Isopentenyl transferase 81.7 0.75 2.6E-05 44.9 3.0 21 229-249 4-24 (253)
404 2fv8_A H6, RHO-related GTP-bin 81.7 0.71 2.4E-05 42.6 2.8 21 228-248 27-47 (207)
405 2g3y_A GTP-binding protein GEM 81.7 0.71 2.4E-05 43.9 2.8 20 228-247 39-58 (211)
406 3ozx_A RNAse L inhibitor; ATP 81.7 0.68 2.3E-05 50.7 3.0 24 223-246 22-45 (538)
407 2wsm_A Hydrogenase expression/ 81.7 1.1 3.8E-05 41.6 4.1 26 225-250 29-54 (221)
408 2hup_A RAS-related protein RAB 81.6 0.61 2.1E-05 43.1 2.2 21 228-248 31-51 (201)
409 1tue_A Replication protein E1; 81.6 0.65 2.2E-05 45.2 2.5 27 223-249 55-81 (212)
410 3sr0_A Adenylate kinase; phosp 81.5 0.83 2.8E-05 43.6 3.2 21 228-248 2-22 (206)
411 3lxx_A GTPase IMAP family memb 81.4 0.73 2.5E-05 43.9 2.8 20 228-247 31-50 (239)
412 1tq4_A IIGP1, interferon-induc 81.4 0.58 2E-05 49.7 2.2 20 228-247 71-90 (413)
413 2il1_A RAB12; G-protein, GDP, 81.2 0.74 2.5E-05 42.0 2.7 22 228-249 28-49 (192)
414 2gco_A H9, RHO-related GTP-bin 81.1 0.78 2.7E-05 42.2 2.8 21 228-248 27-47 (201)
415 2fna_A Conserved hypothetical 81.1 0.79 2.7E-05 45.3 3.0 24 227-250 31-54 (357)
416 3pfi_A Holliday junction ATP-d 81.0 0.8 2.7E-05 45.8 3.1 22 227-248 56-77 (338)
417 2dhr_A FTSH; AAA+ protein, hex 81.0 0.76 2.6E-05 50.0 3.1 24 223-248 63-86 (499)
418 1sxj_E Activator 1 40 kDa subu 80.9 0.74 2.5E-05 46.2 2.8 29 222-250 32-60 (354)
419 2j1l_A RHO-related GTP-binding 80.9 0.61 2.1E-05 43.5 2.0 22 228-249 36-57 (214)
420 2b6h_A ADP-ribosylation factor 80.7 0.73 2.5E-05 42.2 2.4 21 227-247 30-50 (192)
421 2h57_A ADP-ribosylation factor 80.6 0.62 2.1E-05 42.2 1.9 22 228-249 23-44 (190)
422 2bjv_A PSP operon transcriptio 80.6 1.3 4.5E-05 42.7 4.3 42 226-268 29-70 (265)
423 2r44_A Uncharacterized protein 80.5 0.63 2.1E-05 46.6 2.0 25 224-248 44-68 (331)
424 1sxj_D Activator 1 41 kDa subu 80.2 1.1 3.6E-05 44.8 3.6 24 227-250 59-82 (353)
425 2iw3_A Elongation factor 3A; a 80.1 0.55 1.9E-05 55.2 1.7 28 219-246 692-719 (986)
426 3tqc_A Pantothenate kinase; bi 80.1 0.84 2.9E-05 46.8 2.9 20 228-247 94-113 (321)
427 3ake_A Cytidylate kinase; CMP 80.1 1.1 3.7E-05 41.2 3.4 22 228-249 4-25 (208)
428 2qnr_A Septin-2, protein NEDD5 80.1 0.7 2.4E-05 46.5 2.2 20 228-247 20-39 (301)
429 3gmt_A Adenylate kinase; ssgci 80.0 1 3.5E-05 44.2 3.3 23 227-249 9-31 (230)
430 2yc2_C IFT27, small RAB-relate 79.9 0.43 1.5E-05 43.4 0.6 22 228-249 22-43 (208)
431 3k53_A Ferrous iron transport 79.9 0.8 2.7E-05 44.8 2.5 20 228-247 5-24 (271)
432 3euj_A Chromosome partition pr 79.8 0.95 3.3E-05 49.1 3.3 30 221-252 25-54 (483)
433 1gtv_A TMK, thymidylate kinase 79.8 0.46 1.6E-05 44.0 0.7 23 228-250 2-24 (214)
434 1uj2_A Uridine-cytidine kinase 79.8 0.95 3.2E-05 43.8 3.0 21 228-248 24-44 (252)
435 3cpj_B GTP-binding protein YPT 79.7 0.98 3.3E-05 42.3 3.0 21 228-248 15-35 (223)
436 2ius_A DNA translocase FTSK; n 79.4 1.9 6.6E-05 47.0 5.6 49 220-269 161-211 (512)
437 2xb4_A Adenylate kinase; ATP-b 79.3 1.1 3.8E-05 42.5 3.3 22 228-249 2-23 (223)
438 2qu8_A Putative nucleolar GTP- 79.2 0.82 2.8E-05 43.0 2.3 20 228-247 31-50 (228)
439 1xx6_A Thymidine kinase; NESG, 79.2 2.1 7.1E-05 40.4 5.1 31 223-253 5-35 (191)
440 3a4m_A L-seryl-tRNA(SEC) kinas 79.1 1.1 3.8E-05 43.7 3.3 26 225-250 3-28 (260)
441 3gj0_A GTP-binding nuclear pro 79.1 0.56 1.9E-05 43.7 1.1 22 228-249 17-38 (221)
442 3g5u_A MCG1178, multidrug resi 79.1 0.88 3E-05 54.8 3.0 28 219-246 1052-1079(1284)
443 3j16_B RLI1P; ribosome recycli 79.1 0.96 3.3E-05 50.3 3.1 27 220-246 367-398 (608)
444 2gk6_A Regulator of nonsense t 79.0 1.6 5.4E-05 48.4 4.9 54 226-281 195-248 (624)
445 1e9r_A Conjugal transfer prote 79.0 1.4 4.8E-05 46.0 4.2 36 225-262 52-87 (437)
446 1vht_A Dephospho-COA kinase; s 78.9 1.1 3.8E-05 41.9 3.1 21 226-246 4-24 (218)
447 3llu_A RAS-related GTP-binding 78.9 0.96 3.3E-05 41.3 2.6 19 228-246 22-40 (196)
448 1sxj_C Activator 1 40 kDa subu 78.6 1.1 3.7E-05 45.2 3.2 22 229-250 49-70 (340)
449 2ce7_A Cell division protein F 78.6 0.98 3.4E-05 48.8 2.9 20 229-248 52-71 (476)
450 3hws_A ATP-dependent CLP prote 78.5 1.2 4E-05 45.5 3.4 23 226-248 51-73 (363)
451 3g5u_A MCG1178, multidrug resi 78.5 0.87 3E-05 54.9 2.8 27 220-246 410-436 (1284)
452 1g8p_A Magnesium-chelatase 38 78.2 0.84 2.9E-05 45.5 2.2 23 226-248 45-67 (350)
453 2xtp_A GTPase IMAP family memb 78.1 0.99 3.4E-05 43.5 2.6 22 227-248 23-44 (260)
454 3lfu_A DNA helicase II; SF1 he 78.1 1.5 5.3E-05 47.8 4.4 28 226-253 22-49 (647)
455 3th5_A RAS-related C3 botulinu 79.4 0.45 1.5E-05 43.7 0.0 24 226-249 30-53 (204)
456 1a7j_A Phosphoribulokinase; tr 77.8 1.7 5.7E-05 43.5 4.2 25 225-249 4-28 (290)
457 2x77_A ADP-ribosylation factor 77.8 0.76 2.6E-05 41.4 1.5 22 225-246 21-42 (189)
458 3tqf_A HPR(Ser) kinase; transf 77.7 1.1 3.9E-05 42.4 2.8 25 225-249 15-39 (181)
459 3f9v_A Minichromosome maintena 77.7 1.3 4.4E-05 49.1 3.6 29 135-163 207-236 (595)
460 3k1j_A LON protease, ATP-depen 77.5 1.1 3.6E-05 49.5 2.8 27 222-248 56-82 (604)
461 4tmk_A Protein (thymidylate ki 77.3 4 0.00014 39.0 6.5 52 225-279 2-55 (213)
462 3d8b_A Fidgetin-like protein 1 77.2 1.4 4.9E-05 45.0 3.6 23 226-248 117-139 (357)
463 2ohf_A Protein OLA1, GTP-bindi 77.2 1.3 4.3E-05 46.9 3.2 30 220-249 16-45 (396)
464 3umf_A Adenylate kinase; rossm 76.8 1.4 4.6E-05 42.7 3.1 21 228-248 31-51 (217)
465 1um8_A ATP-dependent CLP prote 76.7 1.4 4.7E-05 45.1 3.3 23 226-248 72-94 (376)
466 3co5_A Putative two-component 76.7 0.71 2.4E-05 40.8 1.0 22 225-246 26-47 (143)
467 2c9o_A RUVB-like 1; hexameric 76.6 1.5 5.1E-05 46.5 3.6 25 226-250 63-87 (456)
468 3pxi_A Negative regulator of g 76.5 2.7 9.2E-05 47.4 5.9 27 224-250 199-225 (758)
469 3pxg_A Negative regulator of g 76.4 1.6 5.3E-05 46.7 3.7 28 224-251 199-226 (468)
470 2chq_A Replication factor C sm 76.3 1.6 5.6E-05 42.5 3.6 26 225-250 37-62 (319)
471 4djt_A GTP-binding nuclear pro 76.2 1.1 3.7E-05 41.5 2.1 20 228-247 13-32 (218)
472 3b1v_A Ferrous iron uptake tra 76.1 1.3 4.4E-05 43.9 2.8 22 227-248 4-25 (272)
473 2zan_A Vacuolar protein sortin 76.1 1.3 4.6E-05 46.9 3.1 22 227-248 168-189 (444)
474 3cr8_A Sulfate adenylyltranfer 75.8 1 3.5E-05 49.6 2.1 29 222-250 365-393 (552)
475 1ojl_A Transcriptional regulat 75.7 1.8 6.1E-05 43.4 3.7 44 225-269 24-67 (304)
476 1udx_A The GTP-binding protein 75.7 1.1 3.6E-05 47.7 2.1 30 218-247 149-178 (416)
477 2ga8_A Hypothetical 39.9 kDa p 75.6 1.7 5.8E-05 45.4 3.6 28 223-250 19-48 (359)
478 1wf3_A GTP-binding protein; GT 75.5 1.3 4.3E-05 44.6 2.6 24 225-248 6-29 (301)
479 2v3c_C SRP54, signal recogniti 75.5 2.2 7.4E-05 45.5 4.5 28 226-253 99-126 (432)
480 3vfd_A Spastin; ATPase, microt 75.4 1.6 5.6E-05 44.9 3.5 23 226-248 148-170 (389)
481 1ypw_A Transitional endoplasmi 75.3 1.5 5E-05 50.3 3.3 25 223-247 235-259 (806)
482 3t5d_A Septin-7; GTP-binding p 75.3 1.3 4.4E-05 43.5 2.5 26 222-247 2-29 (274)
483 3a1s_A Iron(II) transport prot 75.2 1.4 4.9E-05 43.1 2.8 20 228-247 7-26 (258)
484 1w36_D RECD, exodeoxyribonucle 75.2 2.2 7.6E-05 47.2 4.6 28 225-252 163-190 (608)
485 3lxw_A GTPase IMAP family memb 74.8 1.5 5.2E-05 42.4 2.8 20 228-247 23-42 (247)
486 4f4c_A Multidrug resistance pr 74.6 1.3 4.6E-05 53.5 2.8 26 221-246 439-464 (1321)
487 2wjy_A Regulator of nonsense t 73.7 2.8 9.5E-05 48.1 5.1 54 226-281 371-424 (800)
488 2f6r_A COA synthase, bifunctio 73.7 1.5 5.1E-05 43.5 2.6 20 228-247 77-96 (281)
489 1yrb_A ATP(GTP)binding protein 73.6 3 0.0001 39.8 4.6 24 228-251 16-39 (262)
490 3nbx_X ATPase RAVA; AAA+ ATPas 73.6 1.2 4E-05 48.4 1.9 25 223-247 38-62 (500)
491 3iev_A GTP-binding protein ERA 73.5 1.6 5.5E-05 43.8 2.7 22 227-248 11-32 (308)
492 1mky_A Probable GTP-binding pr 73.5 1.6 5.5E-05 46.0 2.8 22 227-248 181-202 (439)
493 2ocp_A DGK, deoxyguanosine kin 73.4 1.8 6.3E-05 41.2 3.1 25 225-249 1-25 (241)
494 2xzl_A ATP-dependent helicase 73.1 2.8 9.6E-05 48.1 4.9 54 226-281 375-428 (802)
495 2qag_C Septin-7; cell cycle, c 72.8 1.4 4.9E-05 46.7 2.3 19 229-247 34-52 (418)
496 3llm_A ATP-dependent RNA helic 72.7 2.8 9.6E-05 39.9 4.1 27 223-249 73-99 (235)
497 2h92_A Cytidylate kinase; ross 72.7 2.2 7.4E-05 39.8 3.3 23 226-248 3-25 (219)
498 1c9k_A COBU, adenosylcobinamid 72.7 2.2 7.6E-05 40.2 3.3 33 229-266 2-34 (180)
499 4dhe_A Probable GTP-binding pr 72.7 0.86 2.9E-05 42.2 0.5 23 226-248 29-51 (223)
500 1ypw_A Transitional endoplasmi 72.6 1.8 6.2E-05 49.6 3.2 27 223-249 508-534 (806)
No 1
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=100.00 E-value=3.1e-131 Score=1067.37 Aligned_cols=469 Identities=68% Similarity=1.050 Sum_probs=442.0
Q ss_pred ceeeEEEEECCeEEEEeCC-CCchhhhceEEecc---Cc--eeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCc
Q 008638 86 AIGQVCQVIGAVVDVRFDE-GLPPILTALEVVDH---SV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPI 159 (558)
Q Consensus 86 ~~G~V~~V~G~VVdv~F~~-gLp~i~~~Lev~~~---~~--~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~ 159 (558)
++|+|++|+|+||+++|++ .+|.+++.+++... +. .+++||++|++++.|++++|++++||++|+.|.+||+++
T Consensus 19 ~~G~v~~V~G~vv~v~~~~~~~~~i~~~~~i~~~~~~g~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~ 98 (498)
T 1fx0_B 19 NLGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPL 98 (498)
T ss_dssp CCEEEEEEETTEEEEECCSSCCCCTTCEEEECCCSSSSCCCCCEEEEEECCSSSCEEEEESSCCTTCCTTCEEEECSSSC
T ss_pred CCceEEEEEccEEEEEeCCCCccccccEEEEEeCCCCCcccceEEEEEEEecCCeEEEEEecCccCCCCCCEEEecCCcc
Confidence 4799999999999999975 47899888888531 22 589999999999999999999999999999999999999
Q ss_pred eeccCccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCCh
Q 008638 160 TVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 239 (558)
Q Consensus 160 ~VpVG~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GK 239 (558)
+||||+++||||+|++|+|||+++++...++|||++++|++++|.++++||+||||+||+|+|||||||+|||||+|+||
T Consensus 99 ~vpvG~~lLGRV~d~lG~PiD~~~~i~~~~~~pi~~~~p~~~~r~~~~e~l~TGirvID~l~pigkGqr~gIfgg~GvGK 178 (498)
T 1fx0_B 99 SVPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRSAPAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGK 178 (498)
T ss_dssp EEEESSTTTTCEECTTSCBCSSSSCCCCSEEEESCCCCCCGGGCCCCCCCCCCSCTTHHHHSCCCTTCCEEEEECSSSSH
T ss_pred eEecCccceeeEEcccccCCCCcCCcCCCceeccccCCCchhhhcccccccccceeEeeeecccccCCeEEeecCCCCCc
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHH
Q 008638 240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVA 319 (558)
Q Consensus 240 T~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiA 319 (558)
|+|++++|+|++++|+++|||++||||+||++||+++|.+.++++.. ....+||++|++|||+||++|++++|+|+|+|
T Consensus 179 T~L~~~l~~~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~-~l~~~rtvvV~~t~d~p~~~R~~~~~~altiA 257 (498)
T 1fx0_B 179 TVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQ-NIAESKVALVYGQMNEPPGARMRVGLTALTMA 257 (498)
T ss_dssp HHHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSS-TTCCCCEEEEEECTTSCHHHHTTHHHHHHHTH
T ss_pred hHHHHHHHHHHHhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccc-cccccceEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999888889999999999999999999999999876421 11124899999999999999999999999999
Q ss_pred HHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCCCCc
Q 008638 320 EHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDP 399 (558)
Q Consensus 320 EyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~dp 399 (558)
|||||++|+|||||+||+||||+|+||||+++||||+++||||++|++|++|||||+++++||||+|++|++|+||++||
T Consensus 258 Eyfrd~~G~dVLl~~DsitR~A~A~rEvs~~lge~Ps~~GYpp~l~~~l~~L~ERag~~~~GSIT~i~tV~v~~dD~tdP 337 (498)
T 1fx0_B 258 EYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDP 337 (498)
T ss_dssp HHHTTTSCCEEEEEEECSHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHTSSSSSCCTTCEECCEEEEECGGGCSSSH
T ss_pred HHHHHhcCCcEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhHHHHHHHhccCCCCCceeeeEEEEccCCCcCCc
Confidence 99999789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCChhH
Q 008638 400 APATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDD 479 (558)
Q Consensus 400 ip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~~ 479 (558)
||+++|+||||||+|||+||++||||||||+.|+||+|++++++++|+++++++|++|++|+|++++|+++|+++|+++|
T Consensus 338 i~d~~~~ilDG~ivLsR~La~~giyPAID~l~S~SR~~~~~i~~~~h~~~a~~lr~~la~y~el~~li~i~G~d~ls~~d 417 (498)
T 1fx0_B 338 APATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYEIAQRVKETLQRYKELQDIIAILGLDELSEED 417 (498)
T ss_dssp HHHHHHTTCSEEEEBCSTTTTTTCSSCBCSSSCCBTTCSTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSCTTT
T ss_pred chHHHHHhhCceEEehhhHHhCCCCceeccccccccCCCcccCCHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCccccccccCHHHHHHHHHHHHHH
Q 008638 480 KLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIAKE 555 (558)
Q Consensus 480 ~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~f~~~g~~~~~~~k~~~~~~~ 555 (558)
+++++++++|++||+|+++++|.||+.+|++++++||++.|++|++|+||++||++|||||+|+|+.+|+++++++
T Consensus 418 ~~~l~~~~~i~~fL~Q~~~v~e~ft~~~g~~v~~~~t~~~l~~il~g~~d~~pe~~~~~~g~~~~~~~~~~~~~~~ 493 (498)
T 1fx0_B 418 RLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDSLPEQAFYLVGNIDEATAKAMNLEME 493 (498)
T ss_dssp HHHHHHHHHHHHHTCCCCSSCTTTSCSCCCCCCHHHHHHHHHTTTTTTTSSSCGGGTTTCSSSGGGCC--------
T ss_pred HHHHHHHHHHHHHHcCCchHHHHhhcCCCcccCHHHHHHHHHHHhcCcccCCCHHHhhcCCCHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998644
No 2
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=100.00 E-value=6e-130 Score=1053.85 Aligned_cols=472 Identities=81% Similarity=1.206 Sum_probs=448.6
Q ss_pred ccCCceeeEEEEECCeEEEEeCCCCchhhhceEEeccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCcee
Q 008638 82 TGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITV 161 (558)
Q Consensus 82 ~~~~~~G~V~~V~G~VVdv~F~~gLp~i~~~Lev~~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~V 161 (558)
++..++|+|++|+|++|+|+|+..+|.+++.+++...+.++++||++|++++.+++++|++++||++|+.|..||++++|
T Consensus 9 ~~~~~~G~v~~v~G~vv~v~~~~~~~~i~~~~~i~~~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~~v 88 (482)
T 2ck3_D 9 KAGATTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRI 88 (482)
T ss_dssp ----CEEEEEEEETTEEEEEESSCCCCTTCEEEESSCSSCCEEEEEEEEETTEEEEEESSCCTTCBTTCEEEECSSSCEE
T ss_pred ccCCcceEEEEEEccEEEEEecCccCcccceEEEeeCCCcEEEEEeEEecCCeEEEEeccCccCCCCCCEEEEcCCccee
Confidence 44556899999999999999985688898888775333468999999999999999999999999999999999999999
Q ss_pred ccCccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhH
Q 008638 162 PVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTV 241 (558)
Q Consensus 162 pVG~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~ 241 (558)
|||+++||||+|++|+|||+++++...++|||++++|++++|.++.+||+||||+||+|+|||||||+|||||+|+|||+
T Consensus 89 pvG~~lLGRV~d~lG~PiDg~~~~~~~~~~pi~~~~P~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~Ifgg~G~GKT~ 168 (482)
T 2ck3_D 89 PVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV 168 (482)
T ss_dssp ECSGGGBTCEECTTSCBCSSSCSCCCCCEEESCCCCCCGGGCCCCCCEECCSCHHHHHHSCEETTCEEEEEECTTSSHHH
T ss_pred eccccccCCEEcccCcCcCCcCCCCccccccccccCCchHHhcccCcCCccceEEEecccccccCCeeeeecCCCCChHH
Confidence 99999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHH
Q 008638 242 LIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEH 321 (558)
Q Consensus 242 L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEy 321 (558)
|++++++|++++|+++|||++||||+||++||+++|.+.++++... .++||++|++|+|+||++|++++|+|||+|||
T Consensus 169 L~~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~--~~~rtvvV~~t~d~p~~~r~~~~~~a~tiAEy 246 (482)
T 2ck3_D 169 LIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKD--ATSKVALVYGQMNEPPGARARVALTGLTVAEY 246 (482)
T ss_dssp HHHHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSS--SCCCEEEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHhhhcccccccc--CCceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999998888899999999999999999999999988765222 24699999999999999999999999999999
Q ss_pred hHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCCCCchh
Q 008638 322 FRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAP 401 (558)
Q Consensus 322 fRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~dpip 401 (558)
|||++|+||||++||+||||+|+||||+++||||+++||||++|++|++|+|||+++++||||+|+||++|+||++||||
T Consensus 247 frd~~G~dVLll~DsitR~A~A~rEis~~lge~P~~~GYpp~l~~~l~~l~ERag~~~~GSIT~i~tv~v~~dD~tdPi~ 326 (482)
T 2ck3_D 247 FRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAP 326 (482)
T ss_dssp HHHTTCSCEEEEEECTHHHHHHHHHHHGGGTCCCCGGGCCTTHHHHHHHHHTTSSCCSSCCEEEEEEEECGGGCTTSHHH
T ss_pred HHHhcCCcEEEEeccHHHHHHHHHHhhhhcCCCCccccCchhHHHHhHHHHHhhcCCCCCceeeeEEEEecCCCCCCccH
Confidence 99977999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCChhHHH
Q 008638 402 ATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKL 481 (558)
Q Consensus 402 ~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~~~~ 481 (558)
+++|+||||||+|||+||++||||||||+.|+||++++++++++|+++++++|++|++|+|++++++++|+++|++++++
T Consensus 327 d~~~~i~dG~ivLsr~La~~giyPAIDvl~S~SR~~~~~i~~~~~~~~a~~lr~~la~y~el~~li~i~G~~~l~~~d~~ 406 (482)
T 2ck3_D 327 ATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKL 406 (482)
T ss_dssp HHHGGGCSEEEEBCHHHHTTTCSSCBCTTSCEETTCSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSCHHHHH
T ss_pred HHHHHhcCeEEEEcHHHHhCCCCCccCcccccccCCCcccCCHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcCCHHHHH
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCccccccccCHHHHHHHHHHHHHH
Q 008638 482 TVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIAKE 555 (558)
Q Consensus 482 ~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~f~~~g~~~~~~~k~~~~~~~ 555 (558)
+++++++|++||+|+++++|.||+.+|++++++||++.|++|++|+||++||++|||+|+|+|+.+|+++|.++
T Consensus 407 ~l~~~~~i~~fL~Q~~~v~~~f~~~~g~~~~~~~t~~~l~~il~g~~d~~pe~~~~~~g~~~~~~~~~~~~~~~ 480 (482)
T 2ck3_D 407 TVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAEE 480 (482)
T ss_dssp HHHHHHHHHHHTCCCCGGGHHHHSSCCCCCCHHHHHHHHHHHHTTTTTTSCGGGGTTCSSHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCchHHHHhhcCccccCCHHHHHHHHHHHhcccccCCCHHHhcCcCcHHHHHHHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998543
No 3
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=100.00 E-value=5.3e-120 Score=977.99 Aligned_cols=460 Identities=70% Similarity=1.084 Sum_probs=442.6
Q ss_pred eeeEEEEECCeEEEEeCC-CCchhhhceEEec-c--Cc----eeEEeeeeecCCceEEEEEeccccCcccCceEEecCCC
Q 008638 87 IGQVCQVIGAVVDVRFDE-GLPPILTALEVVD-H--SV----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSP 158 (558)
Q Consensus 87 ~G~V~~V~G~VVdv~F~~-gLp~i~~~Lev~~-~--~~----~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~ 158 (558)
+|+|++|+|+||+++|++ .+|++++.+++.. . +. ++++||++|++++.+++++|++++||++|+.|..||++
T Consensus 3 ~G~v~~v~G~vv~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~ev~~~~~~~~v~~~~~~~t~gl~~G~~V~~tg~~ 82 (473)
T 1sky_E 3 RGRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIAMASTDGLIRGMEVIDTGAP 82 (473)
T ss_dssp EEEEEEEETTEEEEEESTTCCCCTTEEEEEEECCSSTTCCCEEEEEEEEEEEETTEEEEEESSCCTTCCTTCEEEEEEEE
T ss_pred ceEEEEEECcEEEEEecCCcccccCCEEEEEecCCCCCccccceEEEEeEEecCCcEEEEEecCccCCCCCCEEEEcCCc
Confidence 699999999999999985 4888988888754 2 22 58999999999999999999999999999999999999
Q ss_pred ceeccCccccceEEEEecccccccCCCccc-ccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCC
Q 008638 159 ITVPVGRVTLGRIMNVIGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGV 237 (558)
Q Consensus 159 ~~VpVG~~lLGRV~d~lG~PiD~~~~i~~~-~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~ 237 (558)
++||||+++||||+|++|+|||+++++... ++|||+.++|++++|.++.+||+||||+||.|+|++||||++|||++|+
T Consensus 83 ~~vpvg~~llGrv~d~lG~piD~~g~i~~~~~~~pi~~~~p~~~~r~~~~e~l~TGir~ID~L~pi~kGq~~~i~G~sGv 162 (473)
T 1sky_E 83 ISVPVGQVTLGRVFNVLGEPIDLEGDIPADARRDPIHRPAPKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGAGV 162 (473)
T ss_dssp CEEECSGGGTTCEECTTSCBCSSSCCCCTTSCEEESCCCCCCGGGBCCSCCEECCSCHHHHHHSCEETTCEEEEECCSSS
T ss_pred ceeeccccceeeEEeecCCccCcccccCCCceeecccccCcchhhhcccCccccccchHHHHHhhhccCCEEEEECCCCC
Confidence 999999999999999999999999998777 7899999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHH
Q 008638 238 GKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLT 317 (558)
Q Consensus 238 GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~t 317 (558)
|||+|+.++++|+++.++++|||++||||++|+++++++|.+.+++ +||++|++++++||+.|+++++++++
T Consensus 163 GKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~~~~~l--------~~tvvv~~~~~d~pg~r~~~~~~~lt 234 (473)
T 1sky_E 163 GKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDSGVI--------SKTAMVFGQMNEPPGARMRVALTGLT 234 (473)
T ss_dssp CHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHHHTSGG--------GGEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhhhcCCc--------ceeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 9999999999998887889999999999999999999999988755 48999999999999999999999999
Q ss_pred HHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCCC
Q 008638 318 VAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLT 397 (558)
Q Consensus 318 iAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~ 397 (558)
+||||||++|+|||||+||+||||+|+||||+++||||+++||||++|++|++|+|||+++++||||+|+||++|+||++
T Consensus 235 iAEyFrd~~G~~VLl~~D~itR~a~A~reis~~~ge~P~~~GYp~~~~~~l~~l~ERa~~~~~GSIT~i~tv~~~~dD~~ 314 (473)
T 1sky_E 235 MAEYFRDEQGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERITSTAKGSITSIQAIYVPADDYT 314 (473)
T ss_dssp HHHHHHHHSCCEEEEEEECTHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHHHTTSSCBSSCEEEEEEECCCSTTCSS
T ss_pred HHHHHHHhcCCcEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhHHHHHHHHhcCCCCCceEEEEEEEecCCCCC
Confidence 99999997799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCCh
Q 008638 398 DPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSE 477 (558)
Q Consensus 398 dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~ 477 (558)
||||+++|+||||||+|||+||++||||||||+.|+||++++++++++|+++++++|++|++|+|++++++++|+++|++
T Consensus 315 dpi~~~~~~i~dg~ivLsr~La~~g~yPAId~l~S~SR~~~~~~~~~~~~~~a~~lr~~la~y~e~~~li~i~g~~~ls~ 394 (473)
T 1sky_E 315 DPAPATTFSHLDATTNLERKLAEMGIYPAVDPLVSTSRALAPEIVGEEHYQVARKVQQTLERYKELQDIIAILGMDELSD 394 (473)
T ss_dssp SHHHHHHHTTCSEEEEBCTTHHHHTCSSCBCTTTCCBTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCTT
T ss_pred CcchHHHHhhcCceEEecHHHHhCCCCCccccccccccccchhcCCHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccCCH
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCccccccccCHHHHHHHHHHHHH
Q 008638 478 DDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIAK 554 (558)
Q Consensus 478 ~~~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~f~~~g~~~~~~~k~~~~~~ 554 (558)
+|+++++++++|++||+|+++++|.||+.+|++++++||++.|..|++|++|++||++|||+|+|+|+.+|+++|.+
T Consensus 395 ~d~~~l~~~~~i~~fL~Q~~~~~~~~~~~~~~~~~~~~t~~~l~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 471 (473)
T 1sky_E 395 EDKLVVHRARRIQFFLSQNFHVAEQFTGQPGSYVPVKETVRGFKEILEGKYDHLPEDRFRLVGRIEEVVEKAKAMGV 471 (473)
T ss_dssp HHHHHHHHHHHHHHHTCBCCTTTHHHHSCCCCCCCHHHHHHHHHHHHTTTTTTSCGGGSTTBSSSHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHcCCchHhhhhhccCCccCCHHHHHHHHHHHhcccccCCCHHHhcccCCHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999843
No 4
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=100.00 E-value=2.8e-110 Score=902.71 Aligned_cols=424 Identities=24% Similarity=0.365 Sum_probs=392.5
Q ss_pred CCceeeEEEEECCeEEEEeCCCCchh-hhceEEeccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceec
Q 008638 84 KGAIGQVCQVIGAVVDVRFDEGLPPI-LTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVP 162 (558)
Q Consensus 84 ~~~~G~V~~V~G~VVdv~F~~gLp~i-~~~Lev~~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~Vp 162 (558)
...+|+|++|.|+++.|+ |++++ ++++.... .....+| .+++++.+++++|+++.||++|+.|..||++++||
T Consensus 25 ~~~~G~V~~v~g~i~~v~---Gl~~~~~gElv~~~--~~~~g~v-~~l~~d~v~~~~~~~~~gi~~G~~V~~tg~~~~Vp 98 (513)
T 3oaa_A 25 AHNEGTIVSVSDGVIRIH---GLADCMQGEMISLP--GNRYAIA-LNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVP 98 (513)
T ss_dssp CTTEEEEEEEETTEEEEE---ECTTCBTTCEEEET--TTEEEEE-EEECSSCEEEEESSCCSSCCTTCEEECCSCSSEEE
T ss_pred ceeEEEEEEEECcEEEEE---CCccCCcCCEEEEC--CCCEEEE-EEeeCCEEEEEEeCCccCCCCCCEEEEcCCCCeEe
Confidence 456899999999999997 87643 34433333 2344554 56699999999999999999999999999999999
Q ss_pred cCccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHH
Q 008638 163 VGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242 (558)
Q Consensus 163 VG~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L 242 (558)
||+++||||+|++|+|||+++++....+|||+.++|++++|.++++||+||||+||+|+|||||||+||||++|+|||+|
T Consensus 99 vG~~lLGRV~d~lG~PiDg~g~i~~~~~~pi~~~ap~~~~R~~v~epl~TGikaID~l~PigrGQR~~Ifg~~g~GKT~l 178 (513)
T 3oaa_A 99 VGRGLLGRVVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTAL 178 (513)
T ss_dssp CSGGGTTCEEETTSCBTTCSCSCCCSCEEESSCCCCCSSSCCCCCCBCCCSCHHHHHHSCCBTTCBCEEEESSSSSHHHH
T ss_pred eCHHHhccchhhcCcCccCCCCCCccceeecccCCCCccccCCcCcccccceeeeccccccccCCEEEeecCCCCCcchH
Confidence 99999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHh
Q 008638 243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF 322 (558)
Q Consensus 243 ~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyf 322 (558)
++++|.|++ .++.+|||++||||+||+++|+++|.+.|++ +||++|++|+|+||++|++++|+|||+||||
T Consensus 179 ~l~~I~n~~-~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m--------~~tvvV~atad~p~~~r~~a~~~a~tiAEyf 249 (513)
T 3oaa_A 179 AIDAIINQR-DSGIKCIYVAIGQKASTISNVVRKLEEHGAL--------ANTIVVVATASESAALQYLAPYAGCAMGEYF 249 (513)
T ss_dssp HHHHHHTTS-SSSCEEEEEEESCCHHHHHHHHHHHHHHSCS--------TTEEEEEECTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhc-cCCceEEEEEecCChHHHHHHHHHHhhcCcc--------cceEEEEECCCCChHHHHHHHHHHHHHHHHH
Confidence 888888874 3445799999999999999999999998754 5999999999999999999999999999999
Q ss_pred HHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCC---------------CCCceeeEE
Q 008638 323 RDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT---------------KKGSITSVQ 387 (558)
Q Consensus 323 Rd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~---------------~~GSIT~i~ 387 (558)
|| +|+||||+|||+||||+|+||||+++||||+++||||++|+.|++|+|||++. ++||||+|+
T Consensus 250 rd-~G~dVLli~Dsltr~A~A~REisl~lgepP~r~gYP~~vf~~~srLlERAg~~~~~~~~~~~~~~~~g~~GSITal~ 328 (513)
T 3oaa_A 250 RD-RGEDALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGKTGSLTALP 328 (513)
T ss_dssp HH-TTCEEEEEEETHHHHHHHHHHHHHHTTCCBCTTSCBTTHHHHHHHHHTTCSEECHHHHHHHHTTSCCSCCEEEEECC
T ss_pred Hh-cCCCEEEEecChHHHHHHHHHHHHhcCCCCcccCCCchhhhhcchHHHHHhhcccccchhccccccCCCCcceEEEE
Confidence 99 89999999999999999999999999999999999999999999999999862 389999999
Q ss_pred EEeecCCCCCCchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHH
Q 008638 388 AIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDII 467 (558)
Q Consensus 388 ~V~v~~dD~~dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii 467 (558)
+|++|+||++||||+++++|+||||||||+||++||||||||+.|+||+++.. ..++|++++.++|++|++|+|+++++
T Consensus 329 ~V~~~~dD~s~pIp~~~~si~DGqIvLsr~La~~giyPAIdvl~SvSRv~~~~-~~~~~~~va~~lr~~la~y~el~~~~ 407 (513)
T 3oaa_A 329 IIETQAGDVSAFVPTNVISITDGQIFLETNLFNAGIRPAVNPGISVSRVGGAA-QTKIMKKLSGGIRTALAQYRELAAFS 407 (513)
T ss_dssp EEECGGGCCSSHHHHHHHHHSSEEEEECHHHHTTSCCSCBCTTTCEESSGGGG-SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCCccCcchHhhhccCCeEEEEehhHHhCCCCCccCccccccccCccc-ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998655 45899999999999999999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCcccc
Q 008638 468 AILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSF 536 (558)
Q Consensus 468 ~i~G~~~l~~~~~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~f 536 (558)
++ | ++|+++++.+++++++|++||+|+.+. ++++++++..++++.+|++|++|.+..
T Consensus 408 ~~-g-~~ld~~~~~~l~~~~~i~~fL~Q~~~~----------~~~~~e~~~~l~a~~~g~ld~~~~~~~ 464 (513)
T 3oaa_A 408 QF-A-SDLDDATRKQLDHGQKVTELLKQKQYA----------PMSVAQQSLVLFAAERGYLADVELSKI 464 (513)
T ss_dssp TT-C-CSCCHHHHHHHHHHHHHHHHTCCCSSC----------CCCTTHHHHHHHHHHSCTTTTTCCHHH
T ss_pred Hh-h-ccCCHHHHHHHHHHHHHHHHhCCCCCC----------CCCHHHHHHHHHHHhcCCCccCCHHHH
Confidence 85 6 569999999999999999999999888 899999999999999999999998543
No 5
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=100.00 E-value=3.5e-109 Score=897.50 Aligned_cols=423 Identities=22% Similarity=0.340 Sum_probs=394.0
Q ss_pred CceeeEEEEECCeEEEEeCCCCchhh-hceEEeccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceecc
Q 008638 85 GAIGQVCQVIGAVVDVRFDEGLPPIL-TALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (558)
Q Consensus 85 ~~~G~V~~V~G~VVdv~F~~gLp~i~-~~Lev~~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpV 163 (558)
..+|+|++|.|++++|+ |+|++. +++..... .. .+++.+++++.|++++|+++.||++|+.|..||++++|||
T Consensus 26 ~~~G~V~~v~g~iv~v~---gl~~~~~ge~~~i~~--g~-~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpv 99 (510)
T 2ck3_A 26 EETGRVLSIGDGIARVH---GLRNVQAEEMVEFSS--GL-KGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPV 99 (510)
T ss_dssp SSEEEEEEEETTEEEEE---ECTTCBTTCEEEETT--SC-EEEEEEECSSCEEEEESSCGGGCCTTCEEEECCCCCEEEE
T ss_pred eEEeEEEEEECcEEEEe---eCCCCCCCCEEEECC--CC-eEEEEeccCCeEEEEEECCcccccCCCEEEEeCCcceeec
Confidence 46899999999999998 886554 33332222 23 3667778999999999999999999999999999999999
Q ss_pred CccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHHH
Q 008638 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243 (558)
Q Consensus 164 G~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~ 243 (558)
|+++||||+|++|+|||+++++...++|||+.++|++++|.++++||+||||+||+|+|||||||+||||++|+|||+|+
T Consensus 100 g~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~I~g~~g~GKT~La 179 (510)
T 2ck3_A 100 GEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIA 179 (510)
T ss_dssp SGGGTTCEECTTSCBCSSSCCCCCSEEEESSCCCCCSTTBCCCCSBCCCSCHHHHHHSCCBTTCBCEEEESTTSSHHHHH
T ss_pred CccceeeEEccCCcCcCCCCCCCccceeecccCCCCcccccccCccccccceeeccccccccCCEEEEecCCCCCchHHH
Confidence 99999999999999999999998888999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhh-------cCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHH
Q 008638 244 MELINNVAKA-------HGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316 (558)
Q Consensus 244 ~~~i~n~a~~-------~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~ 316 (558)
+++|.|+++. ++.+|||++||||+||++||+++|.+.+++ +||++|++|+|+||.+|++++|+||
T Consensus 180 l~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m--------~~tvvV~atad~p~~~r~~a~~~a~ 251 (510)
T 2ck3_A 180 IDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAM--------KYTIVVSATASDAAPLQYLAPYSGC 251 (510)
T ss_dssp HHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCG--------GGEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCc--------ccceEEEECCCCCHHHHHHHHHHHH
Confidence 8999998873 334799999999999999999999988755 5999999999999999999999999
Q ss_pred HHHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCC----CCCceeeEEEEeec
Q 008638 317 TVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT----KKGSITSVQAIYVP 392 (558)
Q Consensus 317 tiAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~----~~GSIT~i~~V~v~ 392 (558)
|+|||||| +|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+|||++. ++||||+|++|++|
T Consensus 252 tiAEyfrd-~G~dVLli~Dsltr~A~A~REisl~lgepP~r~gYpg~vf~~~~rLlERAg~~~~~~~~GSITal~~v~~~ 330 (510)
T 2ck3_A 252 SMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQ 330 (510)
T ss_dssp HHHHHHHT-TTCEEEEEEETHHHHHHHHHHHHHHTTCCCCGGGCCTTHHHHHHHHHTTCEEBCGGGTSCEEEEEEEEECS
T ss_pred HHHHHHHH-cCCcEEEEEcCHHHHHHHHHHHHHhcCCCCccCCcCchHHHhhHHHHHhhhcccccCCCcceeEeeeeccC
Confidence 99999999 79999999999999999999999999999999999999999999999999985 58999999999999
Q ss_pred CCCCCCchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcC
Q 008638 393 ADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGM 472 (558)
Q Consensus 393 ~dD~~dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~ 472 (558)
+||++||||+++++|+||||+|||+||++||||||||+.|+||+++.. ..++|+++++++|++|++|+|++++++ +|
T Consensus 331 ~dD~s~pI~~~~~si~DgqI~Lsr~La~~gi~PAIdvl~SvSRv~~~~-~~~~~~~~a~~lr~~la~y~el~~~~~-~G- 407 (510)
T 2ck3_A 331 AGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA-QTRAMKQVAGTMKLELAQYREVAAFAQ-FG- 407 (510)
T ss_dssp TTCTTSHHHHHHHHHSSEEEEBCHHHHHHTCSSCBCTTTCEESSGGGG-SCHHHHHHHHHHHHHHHHHHHHGGGSS-SC-
T ss_pred CCCccccchHhhhcccceEEEEehhHhhCCCCCcccchhccccccccc-CCHHHHHHHHHHHHHHHhhhHHHHHHH-hc-
Confidence 999999999999999999999999999999999999999999998655 569999999999999999999999966 58
Q ss_pred CCCChhHHHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCccc
Q 008638 473 DELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQS 535 (558)
Q Consensus 473 ~~l~~~~~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~ 535 (558)
++|+++++.+++++++|++||+|+++. ++++++++..+.++.+|.+|++|.+.
T Consensus 408 ~~l~~~~~~~l~~~~~i~~fL~Q~~~~----------~~~~~~~~~~l~~~~~g~l~~i~~~~ 460 (510)
T 2ck3_A 408 SDLDAATQQLLSRGVRLTELLKQGQYS----------PMAIEEQVAVIYAGVRGYLDKLEPSK 460 (510)
T ss_dssp SSSCHHHHHHHHHHHHHHHTTCCCSSC----------CCCHHHHHHHHHHHHTTSSTTSCGGG
T ss_pred CCCCHHHHHHHHHhHHHHHHhcCCCCC----------CCCHHHHHHHHHHHHhhhhcCCCHHH
Confidence 569999999999999999999999998 78999999999999999999999754
No 6
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=100.00 E-value=3.6e-109 Score=895.99 Aligned_cols=422 Identities=25% Similarity=0.380 Sum_probs=392.1
Q ss_pred CceeeEEEEECCeEEEEeCCCCchhh-hceEEeccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceecc
Q 008638 85 GAIGQVCQVIGAVVDVRFDEGLPPIL-TALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (558)
Q Consensus 85 ~~~G~V~~V~G~VVdv~F~~gLp~i~-~~Lev~~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpV 163 (558)
..+|+|++|.|++++|+ |+|++. +++..... .. .+++.+++++.|++++|+++.||++|+.|.+||++++|||
T Consensus 26 ~~~G~V~~v~g~iv~v~---gl~~~~~ge~~~i~~--g~-~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpv 99 (502)
T 2qe7_A 26 VEVGTVIQVGDGIARVH---GLEKVMAGELLEFEN--GV-MGMAQNLEEDNVGVVILGPYTEIREGTQVKRTGRIMEVPV 99 (502)
T ss_dssp -CEEEEEEEETTEEEEE---CCTTCBTTEEEEETT--SC-EEEEEEEETTEEEEEECSCCSSCCTTCEEEEEEEESEEEC
T ss_pred eEEEEEEEecCcEEEEE---ECCCCCCCCEEEECC--CC-EEEEEEecCCeEEEEEecCccCCcCCCEEEEeCCcceEEc
Confidence 36899999999999998 886554 33322222 23 4667778999999999999999999999999999999999
Q ss_pred CccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHHH
Q 008638 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243 (558)
Q Consensus 164 G~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~ 243 (558)
|+++||||+|++|+|||+++++...++|||+.++|++++|.++++||+||||+||+|+|||||||+||||++|+|||+|+
T Consensus 100 G~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~Ifg~~g~GKT~La 179 (502)
T 2qe7_A 100 GEALLGRVVNPLGQPLDGRGPIETAEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTIA 179 (502)
T ss_dssp SGGGTTCEECTTCCBSSCSCCCCCCCEEESSCCCCCTTSBCCCCSBCCCSCHHHHHSSCCBTTCBCEEEECSSSCHHHHH
T ss_pred ccccceEEEccCCCCCCCCCCCCCCceeeccCCCCCcccccCCCCccccceeecccccccccCCEEEEECCCCCCchHHH
Confidence 99999999999999999999998888999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhH
Q 008638 244 MELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR 323 (558)
Q Consensus 244 ~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfR 323 (558)
+++|.|++. ++.+|||++||||+||++||+++|.+.+++ +||++|++|+|+||.+|++++|+|||+|||||
T Consensus 180 l~~I~~~~~-~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m--------~~tvvV~atad~p~~~r~~a~~~a~tiAEyfr 250 (502)
T 2qe7_A 180 IDTIINQKG-QDVICIYVAIGQKQSTVAGVVETLRQHDAL--------DYTIVVTASASEPAPLLYLAPYAGCAMGEYFM 250 (502)
T ss_dssp HHHHHGGGS-CSEEEEEEEESCCHHHHHHHHHHHHHTTCS--------TTEEEEEECTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhc-CCcEEEEEECCCcchHHHHHHHHHhhCCCc--------ceeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 899998853 334789999999999999999999988754 59999999999999999999999999999999
Q ss_pred HhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCC----CCCceeeEEEEeecCCCCCCc
Q 008638 324 DAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT----KKGSITSVQAIYVPADDLTDP 399 (558)
Q Consensus 324 d~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~----~~GSIT~i~~V~v~~dD~~dp 399 (558)
| +|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+|||++. ++||||+|++|++|+||++||
T Consensus 251 d-~G~dVLl~~Dsltr~A~A~REisl~lgepP~~~gYpg~vf~~~~rL~ERAg~~~~~~~~GSITal~~v~~~~dD~s~p 329 (502)
T 2qe7_A 251 Y-KGKHALVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDEKGGGSLTALPFIETQAGDVSAY 329 (502)
T ss_dssp T-TTCEEEEEEECHHHHHHHHHHHHTTTTCCCCSTTSCTTHHHHHHHHHTSCCBBCTTTTCCEEEEEEEEECSTTCCSSH
T ss_pred H-cCCcEEEEEecHHHHHHHHHHHHHhcCCCCccCCCCchHHHHHHHHHHhhhcccccCCCcceeEEEEEEccCCCcccc
Confidence 9 79999999999999999999999999999999999999999999999999985 579999999999999999999
Q ss_pred hhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCChhH
Q 008638 400 APATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDD 479 (558)
Q Consensus 400 ip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~~ 479 (558)
||+++++|+||||+|||+||++||||||||+.|+||+++.. ..++|+++++++|++|++|+|++++++ +| ++|++++
T Consensus 330 I~~~~~si~DgqI~Lsr~La~~g~~PAIdvl~S~SRv~~~~-~~~~~~~~a~~lr~~la~y~el~~~~~-~G-~~l~~~~ 406 (502)
T 2qe7_A 330 IPTNVISITDGQIFLESDLFYSGVRPAVNVGISVSRVGGAA-QIKAMKKVAGTLRLDLAQYRELQAFAQ-FG-SDLDKAT 406 (502)
T ss_dssp HHHHHHTTSSEEEEECHHHHTTTCSSCBCTTTCEESSGGGG-SCHHHHHHHHHHHHHHHHHHHGGGSTT-CC-CCTTTTT
T ss_pred hhHHHhhhcCcEEEEehhHhhCCCCceeCcccccccCCCcc-CCHHHHHHHHHHHHHHhhhHHHHHHHH-hc-cCCCHHH
Confidence 99999999999999999999999999999999999998655 569999999999999999999999966 58 5699999
Q ss_pred HHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCccc
Q 008638 480 KLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQS 535 (558)
Q Consensus 480 ~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~ 535 (558)
+.+++++++|++||+|+++. ++++++++..+.++.+|.+|++|.+.
T Consensus 407 ~~~l~~~~~i~~fL~Q~~~~----------~~~~~~~~~~l~~~~~g~l~~i~~~~ 452 (502)
T 2qe7_A 407 QAKLNRGERTVEILKQDEHK----------PMPVEEQVISIYAVTNGFMDDIPVED 452 (502)
T ss_dssp TTTHHHHHHHHHHHCCCTTC----------CCCHHHHHHHHHHHHTTTTTSSCSTT
T ss_pred HHHHHHHHHHHHHhCCCCCC----------CCCHHHHHHHHHHHHhhhhcCCCHHH
Confidence 99999999999999999998 78999999999999999999999854
No 7
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=100.00 E-value=9.2e-109 Score=893.21 Aligned_cols=423 Identities=23% Similarity=0.358 Sum_probs=392.3
Q ss_pred CceeeEEEEECCeEEEEeCCCCchhh-hceEEeccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceecc
Q 008638 85 GAIGQVCQVIGAVVDVRFDEGLPPIL-TALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (558)
Q Consensus 85 ~~~G~V~~V~G~VVdv~F~~gLp~i~-~~Lev~~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpV 163 (558)
..+|+|++|.|++++|+ |+|++. +++.....+ ... +++.+++++.|++++|+++.||++|+.|..||++++|||
T Consensus 38 ~~~G~V~~V~g~iv~v~---gl~~~~~gEl~~i~~~-g~~-g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpv 112 (515)
T 2r9v_A 38 EDTGKVIQVGDGIARAY---GLNKVMVSELVEFVET-GVK-GVAFNLEEDNVGIIILGEYKDIKEGHTVRRLKRIIEVPV 112 (515)
T ss_dssp TTEEEEEEEETTEEEEE---ECTTCCTTEEEEETTT-CCE-EEEEECCTTCEEEEEESCCTTCCTTCEEEEEEEECEEEE
T ss_pred eeeeEEEEEECcEEEEe---cCCCCCCCCEEEEecC-CeE-EEEEEecCCeEEEEEecCcccccCCCEEEEeCCcceeec
Confidence 36899999999999998 886554 333322112 233 666677999999999999999999999999999999999
Q ss_pred CccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHHH
Q 008638 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243 (558)
Q Consensus 164 G~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~ 243 (558)
|+++||||+|++|+|||+++++...++|||+.++|++++|.++++||+||||+||+|+|||||||+||||++|+|||+|+
T Consensus 113 G~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~P~~~~R~~v~epl~TGiraID~l~PigrGQR~~I~g~~g~GKT~La 192 (515)
T 2r9v_A 113 GEELLGRVVNPLGEPLDGKGPINAKNFRPIEIKAPGVIYRKPVDTPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTAIA 192 (515)
T ss_dssp SGGGTTCEECTTSCBCSSSCCCCCSEEEESCCCCCCGGGBCCCCSEECCSCHHHHHHSCEETTCBEEEEEETTSSHHHHH
T ss_pred CccceeeEEcCCCCCcCCCCCCCccceeecccCCCCcccccCCCcchhcCccccccccccccCCEEEEEcCCCCCccHHH
Confidence 99999999999999999999998888999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhH
Q 008638 244 MELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR 323 (558)
Q Consensus 244 ~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfR 323 (558)
+++|.|++. ++.+|||++||||+||++||+++|.+.+++ +||++|++|+|+||.+|++++|+|||+|||||
T Consensus 193 l~~I~~~~~-~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m--------~rtvvV~atad~p~~~r~~a~~~a~tiAEyfr 263 (515)
T 2r9v_A 193 IDTIINQKG-QGVYCIYVAIGQKKSAIARIIDKLRQYGAM--------EYTTVVVASASDPASLQYIAPYAGCAMGEYFA 263 (515)
T ss_dssp HHHHHTTTT-TTEEEEEEEESCCHHHHHHHHHHHHHTTGG--------GGEEEEEECTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhc-CCcEEEEEEcCCCcHHHHHHHHHHHhCCCc--------ceeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 899988763 333689999999999999999999988755 49999999999999999999999999999999
Q ss_pred HhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCC----CCCceeeEEEEeecCCCCCCc
Q 008638 324 DAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT----KKGSITSVQAIYVPADDLTDP 399 (558)
Q Consensus 324 d~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~----~~GSIT~i~~V~v~~dD~~dp 399 (558)
| +|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+|||++. ++||||+|++|++|+||++||
T Consensus 264 d-~G~dVLli~DslTr~A~A~REisl~lgepP~r~gYp~~vf~~~~rLlERAg~~~~~~~~GSITal~~v~~~~~D~s~p 342 (515)
T 2r9v_A 264 Y-SGRDALVVYDDLSKHAVAYRQLSLLMRRPPGREAYPGDIFYLHSRLLERAVRLNDKLGGGSLTALPIVETQANDISAY 342 (515)
T ss_dssp T-TTCEEEEEEETHHHHHHHHHHHHHTSCCCTTCCCCCCCHHHHHHHHHTTCEEBCTTTTSCEEEEEEEEEESTTCTTSH
T ss_pred H-cCCcEEEEeccHHHHHHHHHHHhhhcCCCCCcccCChhHHHHhHHHHHHHhhccccCCCcceEEeeeeeccCCCcccc
Confidence 9 89999999999999999999999999999999999999999999999999985 579999999999999999999
Q ss_pred hhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCChhH
Q 008638 400 APATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDD 479 (558)
Q Consensus 400 ip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~~ 479 (558)
||+++++|+||||+|||+||++||||||||+.|+||+++.. ..++|+++++++|++|++|+|++++++ +| ++|++++
T Consensus 343 I~~~~~si~DGqI~Lsr~La~~g~yPAIdvl~SvSRv~~~~-~~~~~~~~a~~lr~~la~y~el~~~~~-~G-~~l~~~~ 419 (515)
T 2r9v_A 343 IPTNVISITDGQIYLEPGLFYAGQRPAINVGLSVSRVGGSA-QIKAMKQVAGMLRIDLAQYRELETFAQ-FA-TELDPAT 419 (515)
T ss_dssp HHHHHHHTSSEEEEBCHHHHHHTCSSCBCTTTCEEGGGTTT-SCHHHHHHHHHHHHHHHHHHHHHTTGG-GC-SCCCHHH
T ss_pred chhhhccccceEEEEchHHHhCCCCCeeccccccccCCccc-CCHHHHHHHHHHHHHHhhhhHHHHHHH-hc-cCCCHHH
Confidence 99999999999999999999999999999999999998655 579999999999999999999999976 58 5699999
Q ss_pred HHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCccc
Q 008638 480 KLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQS 535 (558)
Q Consensus 480 ~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~ 535 (558)
+.+++++++|++||+|+++. ++++++++..+.++.+|.+|++|.+.
T Consensus 420 ~~~l~~~~~i~~fL~Q~~~~----------~~~~~e~~~~l~~~~~g~ld~i~~~~ 465 (515)
T 2r9v_A 420 RAQIIRGQRLMELLKQEQYS----------PMPVEEQVVVLFAGVRGYLDDLPVEE 465 (515)
T ss_dssp HHHHHHHHHHHHHTCCCTTC----------CCCHHHHHHHHHHHHTTTTTTSCGGG
T ss_pred HHHHHHHHHHHHHhcCCCCC----------CCCHHHHHHHHHHHHhhhhccccHHH
Confidence 99999999999999999998 78999999999999999999999754
No 8
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=100.00 E-value=2.6e-109 Score=897.99 Aligned_cols=421 Identities=22% Similarity=0.337 Sum_probs=392.5
Q ss_pred CceeeEEEEECCeEEEEeCCCCchhh-hc-eEEeccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceec
Q 008638 85 GAIGQVCQVIGAVVDVRFDEGLPPIL-TA-LEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVP 162 (558)
Q Consensus 85 ~~~G~V~~V~G~VVdv~F~~gLp~i~-~~-Lev~~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~Vp 162 (558)
..+|+|++|.|++++|+ |+|++. ++ +++ .. .. .+++.+++++.|++++|+++.||++|+.|..||++++||
T Consensus 27 ~~~G~V~~v~g~iv~v~---gl~~~~~ge~~~i-~~--g~-~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vp 99 (507)
T 1fx0_A 27 VNTGTVLQVGDGIARIH---GLDEVMAGELVEF-EE--GT-IGIALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIP 99 (507)
T ss_dssp TTEEEECCCCSSEEEEE---ECTTCCTTCCEEE-TT--CC-EEEEEEECSSEEEEEECSCGGGCCTTCEEECCCCCCEEE
T ss_pred eEEEEEEEEeCCEEEEE---ECCCccCCCEEEE-CC--Cc-eEEEEeccCCeEEEEEecCccCCcCCCEEEEeCCcceee
Confidence 46899999999999998 875554 33 444 22 23 366677899999999999999999999999999999999
Q ss_pred cCccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHH
Q 008638 163 VGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242 (558)
Q Consensus 163 VG~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L 242 (558)
||+++||||+|++|+|||+++++...++|||+.++|++++|.++++||+||||+||+|+|||||||+||||++|+|||+|
T Consensus 100 vG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~Ifg~~g~GKT~L 179 (507)
T 1fx0_A 100 VSEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAV 179 (507)
T ss_dssp ESSSCSSCCCCSSSCCSSSSCCCCCSEEEESSCCCCCSSSBCCCCSBCCCSCTTTTTTSCCBTTCBCBEEESSSSSHHHH
T ss_pred cCccceeEEEccCCcCCCCCCCCCCCceeeccCCCCCcccccccCCcccccceecccccccccCCEEEEecCCCCCccHH
Confidence 99999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHh
Q 008638 243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF 322 (558)
Q Consensus 243 ~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyf 322 (558)
++++|.|++. ++.+|||++||||+||++||+++|.+.+++ +||++|++|+|+||.+|++++|+|||+||||
T Consensus 180 al~~I~~~~~-~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m--------~rtvvV~atad~p~~~r~~a~~~a~tiAEyf 250 (507)
T 1fx0_A 180 ATDTILNQQG-QNVICVYVAIGQKASSVAQVVTNFQERGAM--------EYTIVVAETADSPATLQYLAPYTGAALAEYF 250 (507)
T ss_dssp HHHHHHTCCT-TTCEEEEEEESCCHHHHHHHHHHTGGGTGG--------GSEEEEEECTTSCGGGTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhc-CCcEEEEEEcCCCchHHHHHHHHHHhcCcc--------ccceEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 8899998864 445799999999999999999999887755 5999999999999999999999999999999
Q ss_pred HHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCC----CCCceeeEEEEeecCCCCCC
Q 008638 323 RDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT----KKGSITSVQAIYVPADDLTD 398 (558)
Q Consensus 323 Rd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~----~~GSIT~i~~V~v~~dD~~d 398 (558)
|| +|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+|||++. ++||||+|++|++|+||++|
T Consensus 251 rd-~G~dVLli~Dsltr~A~A~REisl~lge~P~~~gYp~~vf~~~srLlERAg~~~~~~~~GSITal~~v~~~~~D~s~ 329 (507)
T 1fx0_A 251 MY-RERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSLLGEGSMTALPIVETQAGDVSA 329 (507)
T ss_dssp HH-TTCEEEEEEECHHHHHHHHHHHHHHTTCCCCGGGCCSCSSTTTTTTGGGCCBBCTTTTSCEEEECCEEECSTTCTTS
T ss_pred HH-cCCcEEEEEecHHHHHHHHHHHHHhcCCCCccccCCchHhhhhHHHHHhhhhccccCCCcceeeeeeeeccCCCccc
Confidence 99 79999999999999999999999999999999999999999999999999985 57999999999999999999
Q ss_pred chhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCChh
Q 008638 399 PAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSED 478 (558)
Q Consensus 399 pip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~ 478 (558)
|||+++++|+||||+|||+||++||||||||+.|+||+++.. ..++|+++++++|++|++|+|++++++ +| ++|+++
T Consensus 330 pI~~~~~si~DgqIvLsr~La~~g~yPAIdvl~S~SR~~~~~-~~~~~~~~a~~lr~~la~y~el~~~~~-~G-~~l~~~ 406 (507)
T 1fx0_A 330 YIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAA-QIKAMKKVAGKLKLELAQFAELEAFAQ-FA-SDLDKA 406 (507)
T ss_dssp HHHHHHHTTSSCBCCCCSSSSSSSCSSCCCTTTCCCTTGGGG-SCHHHHHHHHHHHHHHHHHHHHTTTGG-GC-SSCCHH
T ss_pred chHHHHHhhcCcEEEEehhHhhCCCCCccchhhhhccccccC-CCHHHHHHHHHHHHHHHhhhHHHHHHH-hc-cCCCHH
Confidence 999999999999999999999999999999999999998555 579999999999999999999999966 58 569999
Q ss_pred HHHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCccc
Q 008638 479 DKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQS 535 (558)
Q Consensus 479 ~~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~ 535 (558)
++.+++++++|++||+|+++. ++++++++..+.++.+|++|++|.+.
T Consensus 407 ~~~~l~~~~~i~~fL~Q~~~~----------~~~~~e~~~~l~~~~~g~l~~i~~~~ 453 (507)
T 1fx0_A 407 TQNQLARGQRLRELLKQPQSA----------PLTVEEQVMTIYTGTNGYLDSLELDQ 453 (507)
T ss_dssp HHHHHHHHHHHHHHHCCCTTC----------CCCHHHHHHHHHHHHTTSSSSSCHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCC----------CCCHHHHHHHHHHHhhchhcCCCHHH
Confidence 999999999999999999998 78999999999999999999999743
No 9
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=100.00 E-value=1.4e-108 Score=887.51 Aligned_cols=430 Identities=23% Similarity=0.347 Sum_probs=369.4
Q ss_pred CceeeEEEEECCeEEEEeCCCCchhhhceEEec-cCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceecc
Q 008638 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVD-HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (558)
Q Consensus 85 ~~~G~V~~V~G~VVdv~F~~gLp~i~~~Lev~~-~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpV 163 (558)
..+|+|++|.|++++|++.. .+.+...+++.. .+..+..||+.+ .++.+.+++|++++||++|+.|..||++++|||
T Consensus 12 ~~~g~V~~V~g~vv~v~g~~-~~~~ge~v~i~~~~g~~~~geV~~~-~~~~v~~~~~~~t~gl~~G~~V~~tg~~l~vpv 89 (469)
T 2c61_A 12 KEYKTITQIAGPLIFVEKTE-PVGYNEIVNIKMGDGTVRRGQVLDS-SADIVVVQVFEGTGGLDKDCGVIFTGETLKLPA 89 (469)
T ss_dssp ----------CCEEEEECCS-CCCTTCEEEEECTTSCEEEEEEEEE-CSSEEEEEEC-------------CEEEBCEEEE
T ss_pred ccccEEEEEECcEEEEeeCC-CCCcCCEEEEEeCCCCEEEEEEEEE-eCCEEEEEEeCCCcCCCCCCEEEEcCCCcEEEc
Confidence 45799999999999998542 234444455531 223456788775 778889999999999999999999999999999
Q ss_pred CccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHHH
Q 008638 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243 (558)
Q Consensus 164 G~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~ 243 (558)
|+++||||+|++|+|||+++++....++||+.++|++++|.++++||+||||+||+|+|||||||+||||++|+|||+|+
T Consensus 90 g~~lLGRV~d~lG~PiDg~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGir~ID~l~pigrGQr~~Ifgg~G~GKt~Ll 169 (469)
T 2c61_A 90 SVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIA 169 (469)
T ss_dssp CGGGTTCEEETTSCBSSSCCCCCCSEEEESSSCSSCCBCSCCCCSBCBCSCHHHHTTSCCBTTCBCCEEECTTSCHHHHH
T ss_pred cccceeeEEcccCCCCCCCCCCCccccccccCccCCcccccccccccceeeEeeeeeeccccCCEEEEECCCCCCHHHHH
Confidence 99999999999999999999988888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc---CCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHH
Q 008638 244 MELINNVAKAH---GGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE 320 (558)
Q Consensus 244 ~~~i~n~a~~~---~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAE 320 (558)
.+|+++...++ +++|||++||||+||++||+++|.+.+++ +||++|++|+|+||.+|++++|+|+|+||
T Consensus 170 ~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m--------~rtvvV~~tsd~p~~~r~~~~~~a~tiAE 241 (469)
T 2c61_A 170 LQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGAL--------ERAVVFLNLADDPAVERIVTPRMALTAAE 241 (469)
T ss_dssp HHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGG--------GGEEEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCc--------cceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 86665532222 26899999999999999999999988755 49999999999999999999999999999
Q ss_pred HhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcC--CCCCceeeEEEEeecCCCCCC
Q 008638 321 HFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT--TKKGSITSVQAIYVPADDLTD 398 (558)
Q Consensus 321 yfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~--~~~GSIT~i~~V~v~~dD~~d 398 (558)
||||++|+||||++||+||||+|+||||+++||||+++||||++|++|++|+|||++ +++||||+|++|++|+||++|
T Consensus 242 yfrdd~G~dVLl~~DsltR~A~A~rEis~~lge~P~~~Gyp~~l~~~l~~l~ERAg~~~~~~GSIT~i~~v~~~~dD~~d 321 (469)
T 2c61_A 242 YLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKGAKGSVTQIPILSMPGDDITH 321 (469)
T ss_dssp HHHHHHCCEEEEEEECHHHHHHHHTTSGGGTTCCTTSTTCCTHHHHHHHHHHTSCEEBTTSSCEEEEEEEEECCSCTTTS
T ss_pred HHHHhcCCeEEEEEeCHHHHHHHHHHHHHhcCCCCcccCcCchhhhhhhhHHhhccccCCCCCceeeeeeeecCCCCcCc
Confidence 999548999999999999999999999999999999999999999999999999987 578999999999999999999
Q ss_pred chhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCc----cChHHHHHHHHHHHHHHccHHHHHHHHHhcCCC
Q 008638 399 PAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHI----LGEEHYNTARGVQKVLQNYKNLQDIIAILGMDE 474 (558)
Q Consensus 399 pip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~----~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~ 474 (558)
|||+++++|+||||+|||+||++||||||||+.|+||+++..+ ++++|+++++++++.|++|+||+++++++|+++
T Consensus 322 PI~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~~~~~ig~~~~~~~~~~~a~~l~~~l~~~~eL~~i~~~~G~~~ 401 (469)
T 2c61_A 322 PIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEA 401 (469)
T ss_dssp CCCCCGGGGTTEEEEBCHHHHHTTCSSCBCTTTCEETTGGGSCSTTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred chHHHHhhccCcEEEEcHHHHhCCCCCccCccccccccchhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 9999999999999999999999999999999999999987653 789999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHH-hhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCcccccc
Q 008638 475 LSEDDKLTVARARKIQR-FLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYM 538 (558)
Q Consensus 475 l~~~~~~~v~~~~~i~~-fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~f~~ 538 (558)
|+++++.+++++++|++ ||+|++++ +++++||+..+.+++ +.+|...+..
T Consensus 402 l~d~~~~~l~~~~~i~~~fL~Q~~~~----------~~~~~et~~~l~~~l----~~~~~~~~~~ 452 (469)
T 2c61_A 402 LSERDTKFLEFADLFEDKFVRQGRNE----------NRTIEDTLEIGWQIL----THLPENQLGR 452 (469)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCCCTTC----------CCCHHHHHHHHHHHH----TTSCGGGCTT
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCC----------CCCHHHHHHHHHHHH----HhCCHHHHHH
Confidence 99999999999999997 99999988 899999999988875 5677766543
No 10
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=100.00 E-value=1.1e-107 Score=876.55 Aligned_cols=424 Identities=25% Similarity=0.380 Sum_probs=388.9
Q ss_pred CceeeEEEEECCeEEEEeCCCCch-hhhce-EEe-ccCceeEEeeeeecCCceEEEEEeccccCcc-cCceEEecCCCce
Q 008638 85 GAIGQVCQVIGAVVDVRFDEGLPP-ILTAL-EVV-DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV-RGQRVLNTGSPIT 160 (558)
Q Consensus 85 ~~~G~V~~V~G~VVdv~F~~gLp~-i~~~L-ev~-~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~-~G~~V~~tg~~~~ 160 (558)
..+|+|++|.|+++.++ |++. .++++ ++. ..+..+..||+.+ .++.+.+++|++++||+ .|+.|..||++++
T Consensus 10 ~~~g~v~~v~g~~v~v~---gl~~~~~ge~v~i~~~~g~~~~geVv~~-~~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~ 85 (465)
T 3vr4_D 10 KEYRTIKEVVGPLMAVE---KVSGVKYEELIEVRMQNGEIRRGQVLEV-QEDKAMVQIFEGTSGINLKNSSVRFLGHPLQ 85 (465)
T ss_dssp -CBCCEEEEETTEEEEE---SCCSCCTTCEEEEECTTSCEEEEEEEEE-ESSEEEEEETTCCTTCCTTTCEEEECSSCCE
T ss_pred ceEEEEEEEECCEEEEe---cCCCCCcCCEEEEEcCCCCEEEEEEEEE-eCCeEEEEEecCccccccCCCEEEECCCcce
Confidence 46899999999999998 6653 34444 332 2233567888876 67788899999999999 8999999999999
Q ss_pred eccCccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChh
Q 008638 161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240 (558)
Q Consensus 161 VpVG~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT 240 (558)
||||+++||||+|++|+|||+++++...+++||+.++|++++|.++++||+||||+||+|+|||||||+|||||+|+|||
T Consensus 86 vpvg~~lLGRV~d~lG~PiD~~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GKt 165 (465)
T 3vr4_D 86 LGVSEDMIGRVFDGLGRPKDNGPEILPEKYLDINGEVINPIARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHK 165 (465)
T ss_dssp EEECGGGTTEEEETTSCBCSCCCCCCCSEEEESSCCCBCTTTEECCCCBCBCSCHHHHTTSCCBTTCBCCEEECTTSCHH
T ss_pred eecchhhccceeccCCcccCCCCCCcccceeeccCcccCchhccCcccccccCceEEecccccccCCEEEEeCCCCcChH
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCC----EEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHH
Q 008638 241 VLIMELINNVAKAHGG----FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316 (558)
Q Consensus 241 ~L~~~~i~n~a~~~~~----v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~ 316 (558)
+|+++ |.|++++|++ +|||++||||+||++||+++|.+.|++ +||++|++|+|+||.+|++++|+|+
T Consensus 166 ~L~~~-Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~--------~rtvvV~atsd~p~~~r~~a~~~a~ 236 (465)
T 3vr4_D 166 ELAAQ-IARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAI--------DRSVMFMNLANDPAIERIATPRMAL 236 (465)
T ss_dssp HHHHH-HHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGG--------GGEEEEEEETTSCHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCc--------cceEEEEECCCCCHHHHHHHHHHHH
Confidence 99976 5556666555 899999999999999999999998755 4999999999999999999999999
Q ss_pred HHHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcC--CCCCceeeEEEEeecCC
Q 008638 317 TVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT--TKKGSITSVQAIYVPAD 394 (558)
Q Consensus 317 tiAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~--~~~GSIT~i~~V~v~~d 394 (558)
|+||||||++|+||||+|||+||||+|+||||+++||||+++||||++|++|++|+|||++ +++||||+|++|++|+|
T Consensus 237 tiAEyfrd~~G~~VLl~~DslTr~A~A~REisl~lge~P~~~GYp~~vf~~l~~l~ERAg~~~~~~GSIT~i~tv~~~~d 316 (465)
T 3vr4_D 237 TAAEYLAYEKGMHVLVIMTDMTNYAEALREISAARREVPGRRGYPGYLYTNLATLFERAGRIRGLKGSVTQIPILTMPED 316 (465)
T ss_dssp HHHHHHHHTTCCEEEEEEECHHHHHHHHHHHHHHTTCCCCGGGSCTTHHHHHHHHHTSCEEETTCSCEEEEEEEEECGGG
T ss_pred HHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHhhcCCCCccccCCchHHHHhHHHHHhhhccCCCCCcEEEEEEEEecCC
Confidence 9999999956999999999999999999999999999999999999999999999999987 46899999999999999
Q ss_pred CCCCchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccC-----hHHHHHHHHHHHHHHccHHHHHHHHH
Q 008638 395 DLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILG-----EEHYNTARGVQKVLQNYKNLQDIIAI 469 (558)
Q Consensus 395 D~~dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~-----~~h~~~a~~~r~~La~y~el~~ii~i 469 (558)
|++||||+++++|+||||+|||+||++||||||||+.|+||+|++. ++ ++|++++++++++|++|+||++++++
T Consensus 317 D~~~pI~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~m~~~-ig~~~~~~~h~~~a~~l~~~~~~~~el~~i~~~ 395 (465)
T 3vr4_D 317 DKTHPIPDLTGYITEGQIILTRELYKSGIQPPIDVLPSLSRLKDKG-TGAGKTREDHAATMNQLFAAYAQGKQAKELAVV 395 (465)
T ss_dssp CTTSHHHHHHHHHSSEEEEBCHHHHHTTCSSCBCTTTCEETTGGGS-CSTTTSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhHHHhhhcCeEEEEcHHHHhCCCCCCCCccccchhcchhh-cCcccCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999998554 35 89999999999999999999999999
Q ss_pred hcCCCCChhHHHHHHHHHHH-HHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCcccc
Q 008638 470 LGMDELSEDDKLTVARARKI-QRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSF 536 (558)
Q Consensus 470 ~G~~~l~~~~~~~v~~~~~i-~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~f 536 (558)
.|.++|+++|+.++.+++++ ++||+|++++ ..++++++..+.+++. ++|....
T Consensus 396 ~G~d~L~~~d~~~~~~~~~~~~~fL~Q~~~e----------~~~~~~~~~~l~~~l~----~~p~~~~ 449 (465)
T 3vr4_D 396 LGESALSDIDKIYAKFAERFENEYVNQGFYT----------NRTITETLDLGWELLA----MLPRTEL 449 (465)
T ss_dssp HCTTSCCHHHHHHHHHHHHHHHHTTCCCTTC----------CCCHHHHHHHHHHHHT----TSCTTTC
T ss_pred cCCCCCCHHHHHHHHhhHHHHHHHhCCCCCC----------CCCHHHHHHHHHHHHh----hCCHHHH
Confidence 99999999999999999998 5899999998 7899999999998765 4666554
No 11
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=100.00 E-value=1.1e-106 Score=868.65 Aligned_cols=425 Identities=26% Similarity=0.378 Sum_probs=388.4
Q ss_pred CceeeEEEEECCeEEEEeCCCCch-hhhce-EEec-cCceeEEeeeeecCCceEEEEEeccccCcc-cCceEEecCCCce
Q 008638 85 GAIGQVCQVIGAVVDVRFDEGLPP-ILTAL-EVVD-HSVRLVLEVAQHMGEGVVRTIAMDGTEGLV-RGQRVLNTGSPIT 160 (558)
Q Consensus 85 ~~~G~V~~V~G~VVdv~F~~gLp~-i~~~L-ev~~-~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~-~G~~V~~tg~~~~ 160 (558)
..+|+|++|.|+++.+. |++. .++++ ++.. .+..+..||+.+ .++.+.+++|++++||+ .|+.|..||++++
T Consensus 6 ~~~g~V~~v~g~~v~v~---gl~~~~~ge~v~i~~~~g~~~~geVv~~-~~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~ 81 (464)
T 3gqb_B 6 KEYTGITYISGPLLFVE---NAKDLAYGAIVDIKDGTGRVRGGQVIEV-SEEYAVIQVFEETTGLDLATTSVSLVEDVAR 81 (464)
T ss_dssp CCBCCEEEEETTEEEEE---SCTTSCTTCEEEEECTTSCEEEEEEEEE-ESSEEEEEESSCCTTCCSSSCEEEEEESSCE
T ss_pred ceeeEEEEEECCEEEEe---cCCCCCcCCEEEEEcCCCCEEEEEEEEE-eCCeEEEEEecCccccccCCCEEEECCCCcE
Confidence 46899999999999998 6653 33443 3322 233567888876 77788899999999999 9999999999999
Q ss_pred eccCccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChh
Q 008638 161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240 (558)
Q Consensus 161 VpVG~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT 240 (558)
||||+++||||+|++|+|||+++++...+++||+.++|++++|.++++||+||||+||+|+|||||||+||||++|+|||
T Consensus 82 vpvg~~lLGRV~d~lG~PiD~~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GKt 161 (464)
T 3gqb_B 82 LGVSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPAN 161 (464)
T ss_dssp EEECSTTTTEEEETTCCBCSSSCCCCCSEEEETTCCCBCGGGBCCCCCBCBCSCHHHHTTSCCBTTCBCCEEEETTSCHH
T ss_pred EEeChHhcCCEeccCCcccCCCccccCcceeeccCCCCChhhccCccccccCcceeeecccccccCCEEEEecCCCCCch
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcC-------C----EEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHH
Q 008638 241 VLIMELINNVAKAHG-------G----FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARA 309 (558)
Q Consensus 241 ~L~~~~i~n~a~~~~-------~----v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~ 309 (558)
+|+.+| .|++++|+ + +|||++||||+||++||+++|.+.|++ +||++|++|+|+||.+|+
T Consensus 162 ~L~~~I-a~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~--------~rtvvv~~t~d~p~~~r~ 232 (464)
T 3gqb_B 162 EIAAQI-ARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGAL--------SRSVLFLNKADDPTIERI 232 (464)
T ss_dssp HHHHHH-HHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGG--------GGEEEEEEETTSCTHHHH
T ss_pred HHHHHH-HHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccc--------cceEEEEECCCCCHHHHH
Confidence 999765 55565532 3 899999999999999999999998755 499999999999999999
Q ss_pred HHHHHHHHHHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcC--CCCCceeeEE
Q 008638 310 RVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT--TKKGSITSVQ 387 (558)
Q Consensus 310 ~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~--~~~GSIT~i~ 387 (558)
+++|+|||+||||||++|+||||+|||+||||+|+||||+++||||+++||||++|++|++|+|||++ +++||||+|+
T Consensus 233 ~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr~A~A~REisl~lge~P~~~GYp~~~f~~l~~l~ERag~~~~~~GSIT~l~ 312 (464)
T 3gqb_B 233 LTPRMALTVAEYLAFEHDYHVLVILTDMTNYSEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVVEGKKGSVTQIP 312 (464)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEETHHHHHHHHHHHHHTTTCCBCGGGSBTTHHHHHHHHHTSCBCBTTCSCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHhcCCCCccccCCchHHHHhHHHHHhhcccCCCCCcEEEEE
Confidence 99999999999999856999999999999999999999999999999999999999999999999987 4589999999
Q ss_pred EEeecCCCCCCchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccC-----hHHHHHHHHHHHHHHccHH
Q 008638 388 AIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILG-----EEHYNTARGVQKVLQNYKN 462 (558)
Q Consensus 388 ~V~v~~dD~~dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~-----~~h~~~a~~~r~~La~y~e 462 (558)
+|++|+||++||||+++++|+||||+|||+||++||||||||+.|+||+|++.+ + ++|++++++++++|++|+|
T Consensus 313 ~v~~~~dD~~~pi~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~m~~~i-g~~~~~~~h~~~a~~l~~~~~~~~e 391 (464)
T 3gqb_B 313 ILSMPDDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMNNGV-GKGKTREDHKQVSDQLYSAYANGVD 391 (464)
T ss_dssp EEEETTSCTTSHHHHHHHHHSSEEEEBCHHHHHTTCSSCBCTTTCEETTGGGTS-STTTSCTTHHHHHHHHHHHHHHHHH
T ss_pred EEEccCCCccCchhHHHhhhcCeEEEEcHHHHhCCCCCCcCcccchhhcchhhc-CcccCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999986543 5 8999999999999999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHH-HhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCcccccc
Q 008638 463 LQDIIAILGMDELSEDDKLTVARARKIQ-RFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYM 538 (558)
Q Consensus 463 l~~ii~i~G~~~l~~~~~~~v~~~~~i~-~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~f~~ 538 (558)
|++++++.|.++|+++|+.++.++++++ +||+|+ ++ ..++++++..+.+++.. +|.....-
T Consensus 392 l~~i~~~~G~d~L~~~d~~~~~~~~~~~~~fL~Q~-~e----------~~~~~~s~~~l~~ll~~----~p~~~~~~ 453 (464)
T 3gqb_B 392 IRKLVAIIGEDALTENDRRYLQFADAFERFFINQG-QQ----------NRSIEESLQIAWALLSM----LPQGELKR 453 (464)
T ss_dssp HHHHTSSSCSCCCCSHHHHTTHHHHHHHHTTTCCT-TC----------CCCHHHHHHHHHHHHTT----SCGGGCTT
T ss_pred HHHHHHhcCCCCCCHHHHHHHHhhHHHHHHhcCCC-CC----------CCCHHHHHHHHHHHHHh----CCHHHHhc
Confidence 9999999999999999999999999985 899999 77 78999999999988764 77766543
No 12
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=100.00 E-value=1.8e-104 Score=866.77 Aligned_cols=420 Identities=25% Similarity=0.404 Sum_probs=366.7
Q ss_pred eeeEEEEECCeEEEEeCCCCchhhhceEEeccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceeccCcc
Q 008638 87 IGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRV 166 (558)
Q Consensus 87 ~G~V~~V~G~VVdv~F~~gLp~i~~~Lev~~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpVG~~ 166 (558)
.|+|++|.|++|++++..+ ..++++...++ .++..||+.+.++ .+.+++|+++.||++|++|..||++++||||++
T Consensus 10 ~G~V~~V~G~vv~v~g~~~--~~~gE~v~v~~-~~l~gEVi~~~~d-~a~i~v~e~t~Gl~~G~~V~~tG~~lsV~vG~~ 85 (600)
T 3vr4_A 10 IGKIIKVSGPLVMAENMSE--ASIQDMCLVGD-LGVIGEIIEMRQD-VASIQVYEETSGIGPGEPVRSTGEALSVELGPG 85 (600)
T ss_dssp CEEEEEEETTEEEEESCTT--SCTTCEEEETT-TTEEEEEEEEETT-EEEEEESSCCTTCCTTCEEEECSSSSEEEESTT
T ss_pred ceEEEEEECcEEEEEcCCC--CccCCEEEECC-CcEEEEEEEEcCC-cEEEEEccCCCCCCCCCEEEECCCCCEEEeCHH
Confidence 6999999999999985433 23344433332 3689999998664 556999999999999999999999999999999
Q ss_pred ccceEEEEeccccccc----C-----------CCcc--------------------------------------------
Q 008638 167 TLGRIMNVIGEPIDEK----G-----------DLKT-------------------------------------------- 187 (558)
Q Consensus 167 lLGRV~d~lG~PiD~~----~-----------~i~~-------------------------------------------- 187 (558)
+||||+|++|+|||+. + ++..
T Consensus 86 lLGrV~DglGrPlD~~~~~~g~~~~~~g~~~~~l~~~~~w~f~p~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~ 165 (600)
T 3vr4_A 86 IISQMFDGIQRPLDTFMEVTQSNFLGRGVQLPALDHEKQWWFEATIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGT 165 (600)
T ss_dssp CTTCEECTTCCBHHHHHHHHCSSBCCTTCCCCSSCSSCCEEEEECSCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEE
T ss_pred HHhhhhCcCCCcccccccccCccccccCCcCCCCCcccccccCcccccCCEecCCceEEEEecCCceeeeeecCCCCCce
Confidence 9999999999999986 4 1111
Q ss_pred -----------------------------cccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCC
Q 008638 188 -----------------------------EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVG 238 (558)
Q Consensus 188 -----------------------------~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~G 238 (558)
.++||++.+ |++.+|.++++||+||||+||+|+||+||||++||||+|+|
T Consensus 166 v~~i~~g~~~v~~~v~~i~~~~g~~~i~~~~~wpv~~~-~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifgg~g~G 244 (600)
T 3vr4_A 166 VQKIESGSFTIDDPICVIETEQGLKELTMMQKWPVRRG-RPIKQKLNPDVPMITGQRVIDTFFPVTKGGAAAVPGPFGAG 244 (600)
T ss_dssp EEEECCEEECTTSCCEEEEETTEEEEECSCEEEETTSC-CCCSEEECCCSBCCCCCHHHHHHSCCBTTCEEEEECCTTSC
T ss_pred EEEecCCcceeceeEEEEeccCCcccccccccccccCC-CchhhccCCCceecccchhhhccCCccCCCEEeeecCCCcc
Confidence 134677665 44789999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHH
Q 008638 239 KTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV 318 (558)
Q Consensus 239 KT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~ti 318 (558)
||+|+++|+++ + +.++|||++||||+||++|++++|.|.....+| +..++||++|++|+|+||++|++++|+|+|+
T Consensus 245 KT~L~~~ia~~-~--~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G-~~~m~rtvvV~~tsd~p~~~R~~~~~~alti 320 (600)
T 3vr4_A 245 KTVVQHQIAKW-S--DVDLVVYVGCGERGNEMTDVVNEFPELIDPNTG-ESLMERTVLIANTSNMPVAAREASIYTGITI 320 (600)
T ss_dssp HHHHHHHHHHH-S--SCSEEEEEEEEECHHHHHHHHHHTTTCBCTTTC-SBGGGGEEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-c--CCCEEEEEEecccHHHHHHHHHHHHhhcccccc-cccccceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 99999977654 3 458999999999999999999999873322232 2256799999999999999999999999999
Q ss_pred HHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcC-------CCCCceeeEEEEee
Q 008638 319 AEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT-------TKKGSITSVQAIYV 391 (558)
Q Consensus 319 AEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~-------~~~GSIT~i~~V~v 391 (558)
|||||| +|+||||++||+||||+|+||||+++||||+++||||+++++|++|||||++ +++||||+|++|++
T Consensus 321 AEyfrd-~G~dVLl~~Ds~tR~A~A~rEiS~~lge~P~~~GYp~~l~s~L~~l~ERAg~~~~~~~~~~~GSIT~i~~v~~ 399 (600)
T 3vr4_A 321 AEYFRD-MGYDVAIMADSTSRWAEALREMSGRLEEMPGDEGYPAYLGSRLAEYYERSGRVIALGSDQREGSITAISAVSP 399 (600)
T ss_dssp HHHHHT-TTCEEEEEEECHHHHHHHHHHHHHHTTCCBCGGGCBTTHHHHHHHHHTTSEEEECSSTTCCEEEEEEEEEECC
T ss_pred HHHHHH-cCCCEEEEecchHHHHHHHHHHHhccCCCCccccCCchhhhHHHHHHHhhccccccCCCCCCcceEEEEEEEC
Confidence 999999 7999999999999999999999999999999999999999999999999975 46899999999999
Q ss_pred cCCCCCCchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCC------CccChHHHHHHHHHHHHHHccHHHHH
Q 008638 392 PADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSP------HILGEEHYNTARGVQKVLQNYKNLQD 465 (558)
Q Consensus 392 ~~dD~~dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~------~~~~~~h~~~a~~~r~~La~y~el~~ 465 (558)
|+||++||||+++++|+||||+|||+||++||||||||+.|+||+++. .+++++|++++++++++|++|+|+++
T Consensus 400 ~gdD~tdPi~~~t~~i~dg~ivLsr~La~~giyPAId~l~S~SR~~~~l~~~~~~~~~~~h~~~a~~~~~~la~~~el~~ 479 (600)
T 3vr4_A 400 SGGDISEPVTQNTLRVVKVFWGLDSSLAQKRHFPSINWIQSYSLYSTEVGRYMDQILQQDWSDMVTEGMRILQEEEQLNE 479 (600)
T ss_dssp SSSCTTSHHHHHHHTTCCEECCBCHHHHTTTCSSCBCTTTCEETTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcchhhhhhhccEEEEEhhhHHhCCCCCccCcccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999863 35789999999999999999999999
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHH-HhhCCCCCc-cchhcCCCCceecHHHHH
Q 008638 466 IIAILGMDELSEDDKLTVARARKIQ-RFLSQPFHV-AEVFTGAPGKYVELKESI 517 (558)
Q Consensus 466 ii~i~G~~~l~~~~~~~v~~~~~i~-~fL~Q~~~~-ae~ft~~~g~~v~l~dti 517 (558)
|++++|+|+|+++|+++++++++|+ +||+|++|. .+.|| .+.+.+.+.++|
T Consensus 480 ii~i~G~d~Ls~~dk~~l~~a~~i~e~fL~Q~~f~~~d~~~-~~~kq~~~l~~i 532 (600)
T 3vr4_A 480 IVRLVGIDSLSDNDRLTLEVAKSIREDYLQQNAFDDVDTFT-SREKQFNMLKVI 532 (600)
T ss_dssp HHHHTCGGGSCHHHHHHHHHHHHHHHHTTCCCTTSTTTTCC-CHHHHHHHHHHH
T ss_pred HHhccCCccCCHHHHHHHHHHHHHHHHhCCCCCcCCccccC-CHHHHHHHHHHH
Confidence 9999999999999999999999998 599999655 35555 334444333333
No 13
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=100.00 E-value=2e-104 Score=863.57 Aligned_cols=423 Identities=27% Similarity=0.402 Sum_probs=368.7
Q ss_pred eeeEEEEECCeEEEEeCCCCchhhhceEEeccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceeccCcc
Q 008638 87 IGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRV 166 (558)
Q Consensus 87 ~G~V~~V~G~VVdv~F~~gLp~i~~~Lev~~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpVG~~ 166 (558)
.|+|++|.|++|++++..+ +.++..+++ ++ .++.+||+.+.++ .+.+++|+++.||++|++|..||++++||||++
T Consensus 3 ~G~V~~V~G~vv~v~g~~~-~~~gE~v~v-~~-~~l~gEVi~~~~d-~~~i~v~e~t~Gl~~G~~V~~tg~~l~V~vG~~ 78 (578)
T 3gqb_A 3 QGVIQKIAGPAVIAKGMLG-ARMYDISKV-GE-EGLVGEIIRLDGD-TAFVQVYEDTSGLKVGEPVVSTGLPLAVELGPG 78 (578)
T ss_dssp EEEEEEEETTEEEEESCTT-CCTTEEEEE-TT-TTEEEEEEEEETT-EEEEEESSCCTTCCTTCEEEEEEEESEEEESTT
T ss_pred eeEEEEEECCEEEEEcCCC-CccCCEEEE-CC-CcEEEEEEEEcCC-cEEEEEcCCCCCCCCCCEEEECCCCCEEEeCHH
Confidence 6999999999999995443 233333444 32 3689999998665 456999999999999999999999999999999
Q ss_pred ccceEEEEeccccccc----CC----------Ccc---------------------------------------------
Q 008638 167 TLGRIMNVIGEPIDEK----GD----------LKT--------------------------------------------- 187 (558)
Q Consensus 167 lLGRV~d~lG~PiD~~----~~----------i~~--------------------------------------------- 187 (558)
+||||+|++|+|||+. ++ +..
T Consensus 79 lLGrV~DglG~PlD~~~~~~g~~~~~g~~~~~l~~~~~w~f~p~~~~g~~v~~G~i~g~v~e~~~ih~i~~pp~~~g~v~ 158 (578)
T 3gqb_A 79 MLNGIYDGIQRPLERIREKTGIYITRGVVVHALDREKKWAWTPMVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVK 158 (578)
T ss_dssp CTTCEECTTSCBHHHHHHHHCSBCCTTCCCCSSCSSSCEEEEECCCTTCEECTTCEEEEEEETTEEEEEECCTTCCEEEE
T ss_pred HhhhhhCcCCCcccccccccCccccccccCCCcCcccccccccccccCccccccceeeeecccccceecccCCCcCceeE
Confidence 9999999999999986 31 111
Q ss_pred -------------------------cccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHH
Q 008638 188 -------------------------EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242 (558)
Q Consensus 188 -------------------------~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L 242 (558)
.++||++.++| +.+|.++++||+||||+||+|+||+||||+|||||+|+|||+|
T Consensus 159 ~i~~~G~~~v~~~i~~~~~g~~i~~~~~wPv~~~~p-~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifg~~g~GKT~l 237 (578)
T 3gqb_A 159 EVKPAGEYTVEEPVVVLEDGTELKMYHTWPVRRARP-VQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKSVT 237 (578)
T ss_dssp EECCSEEECTTSCSEEETTCCEECSCEEEETTSCCC-CSEEECSCSEECCSCHHHHTTSCEETTCEEEECCCTTSCHHHH
T ss_pred EeccCCcccccceeEEeecCccccccccccccCCCC-hHHhccCCCcccccchhhhhcccccCCCEEeeeCCCCccHHHH
Confidence 13466666644 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHh
Q 008638 243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF 322 (558)
Q Consensus 243 ~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyf 322 (558)
+++|+++ + +.++|||++||||+||++|++++|.|.....+| +..++||++|++|||+||++|++++|+|+|+||||
T Consensus 238 ~~~ia~~-~--~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G-~~~~~rtvvv~~tsd~p~~~R~~~~~~altiAEyf 313 (578)
T 3gqb_A 238 QQSLAKW-S--NADVVVYVGSGERGNEMTDVLVEFPELTDPKTG-GPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYF 313 (578)
T ss_dssp HHHHHHH-S--SCSEEEEEEEEECHHHHHHHHTTGGGCBCTTTS-SBSGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc-c--CCCEEEEEEecccHHHHHHHHHHHHhhcccccc-cccccceEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 9977654 3 468999999999999999999999874322222 23567999999999999999999999999999999
Q ss_pred HHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcC-----CCCCceeeEEEEeecCCCCC
Q 008638 323 RDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT-----TKKGSITSVQAIYVPADDLT 397 (558)
Q Consensus 323 Rd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~-----~~~GSIT~i~~V~v~~dD~~ 397 (558)
|| +|+||||++||+||||+|+||||+++||||+++||||+++++|++|||||++ +++||||+|++|++|+||++
T Consensus 314 rd-~G~dVLl~~Ds~tR~A~A~rEis~~lge~P~~~GYp~~l~s~l~~l~ERAg~~~~~~~~~GSIT~i~~v~~~gdD~t 392 (578)
T 3gqb_A 314 RD-QGFSVALMADSTSRWAEALREISSRLEEMPAEEGYPPYLAARLAAFYERAGKVITLGGEEGAVTIVGAVSPPGGDMS 392 (578)
T ss_dssp HH-TTCEEEECCSCHHHHHHHHHHHHHHTTCCCCSSSSCTTHHHHHHHHHTTCEEEECTTSCEEEEEEEEECCCTTTCTT
T ss_pred HH-cCCCEEEEecChHHHHHHHHHHHHhccCCCccccCCchhhhHHHHHHHhhcCcccCCCCCcceEEEEEEEcCCCCCC
Confidence 99 7999999999999999999999999999999999999999999999999976 47899999999999999999
Q ss_pred CchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCC------CccChHHHHHHHHHHHHHHccHHHHHHHHHhc
Q 008638 398 DPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSP------HILGEEHYNTARGVQKVLQNYKNLQDIIAILG 471 (558)
Q Consensus 398 dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~------~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G 471 (558)
||||+++++|+||||+|||+||++||||||||+.|+||+++. .+++++|++++++++++|++|+|++++++++|
T Consensus 393 dPi~~~t~~i~dg~ivLsr~La~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~h~~~a~~~~~~l~~~~el~~ii~i~G 472 (578)
T 3gqb_A 393 EPVTQSTLRIVGAFWRLDASLAFRRHFPAINWNGSYSLFTSALDPWYRENVAEDYPELRDAISELLQREAGLQEIVQLVG 472 (578)
T ss_dssp SHHHHHHHTTCSEECCBCHHHHHHTCSSCBCTTTCEESSHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHTTTTTTTTTT
T ss_pred CcchHHHhhhcCceEEECHHHHhCCCCCCcCcccchhhccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999863 35789999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHH-HhhCCCCCc-cchhcCCCCceecHHHHHHHH
Q 008638 472 MDELSEDDKLTVARARKIQ-RFLSQPFHV-AEVFTGAPGKYVELKESIASF 520 (558)
Q Consensus 472 ~~~l~~~~~~~v~~~~~i~-~fL~Q~~~~-ae~ft~~~g~~v~l~dti~~~ 520 (558)
+|+|+++|+++++++++|+ +||+|++|. .+.|+ .+.+.+.+.++|..|
T Consensus 473 ~d~Ls~~dk~~l~~a~~i~~~fL~Q~~f~~~d~~~-~~~kq~~~l~~i~~~ 522 (578)
T 3gqb_A 473 PDALQDAERLVIEVGRIIREDFLQQNAYHEVDAYS-SMKKAYGIMKMILAF 522 (578)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHTCCCSSSTTTTCC-CHHHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHHHHhCCCCCCCCceecC-CHHHHHHHHHHHHHH
Confidence 9999999999999999998 599999655 35555 444444444444333
No 14
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=100.00 E-value=9.6e-105 Score=866.18 Aligned_cols=424 Identities=27% Similarity=0.389 Sum_probs=311.9
Q ss_pred ceeeEEEEECCeEEEEeCCCCc-hhhhceEEeccCceeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceeccC
Q 008638 86 AIGQVCQVIGAVVDVRFDEGLP-PILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (558)
Q Consensus 86 ~~G~V~~V~G~VVdv~F~~gLp-~i~~~Lev~~~~~~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~VpVG 164 (558)
..|+|++|.|+++.++ |++ ..++++..+++ .++..||+.+ .++.+.+++|+++.||++|++|..||++++||||
T Consensus 3 ~~G~V~~V~G~iv~~~---g~~~~~~gElv~v~~-~~l~geVi~l-~~d~~~i~v~e~t~Gi~~G~~V~~tg~~lsV~vG 77 (588)
T 3mfy_A 3 AKGRIIRVTGPLVVAD---GMKGAKMYEVVRVGE-LGLIGEIIRL-EGDKAVIQVYEETAGVRPGEPVVGTGASLSVELG 77 (588)
T ss_dssp ---------------------------------------------------------------CCCCCSSSSSCCEEEES
T ss_pred ceeEEEEEECCEEEEE---cCCCCccCCEEEEcC-CceEEEEEEe-cCCeEEEEEccCCCCCCCCCEEEEcCCCCEEEeC
Confidence 4699999999999997 665 33344433332 3578899876 6677779999999999999999999999999999
Q ss_pred ccccceEEEEecccccccCCCc----------------------------------------------------------
Q 008638 165 RVTLGRIMNVIGEPIDEKGDLK---------------------------------------------------------- 186 (558)
Q Consensus 165 ~~lLGRV~d~lG~PiD~~~~i~---------------------------------------------------------- 186 (558)
++|||||+|++|+|||+.+++.
T Consensus 78 ~gLLGrV~DglgrPLd~~~~~~g~~~~~g~~~~~l~~~~~w~f~p~~~~gd~v~~G~i~g~v~e~~~~~~~imvpp~~~g 157 (588)
T 3mfy_A 78 PRLLTSIYDGIQRPLEVIREKTGDFIARGVTAPALPRDKKWHFIPKAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEG 157 (588)
T ss_dssp TTCTTCEEETTCCSSSSCCCCCSSSCCCCCCCCSSCSSCCEEEEECCCTTCEECTTCEEEEEECSSSCEEEEECCTTCCE
T ss_pred HHHHhhccCCCCCcccCcccccccccccccccCccccccccccccccccCcccccCceEEEEecccceeeeeecCCCCCc
Confidence 9999999999999999864310
Q ss_pred -------------------------------ccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCC
Q 008638 187 -------------------------------TEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGA 235 (558)
Q Consensus 187 -------------------------------~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~ 235 (558)
..++||++.++| +++|.++++||+||||+||+|+|||||||+||||++
T Consensus 158 ~v~~i~~~g~~~v~~~i~~i~~~~g~~~~i~~~~~wpv~~~~p-~~~R~~~~epl~TGirvID~l~PigkGqr~~I~g~~ 236 (588)
T 3mfy_A 158 EIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPA 236 (588)
T ss_dssp EEEEECCSEEECTTSEEEEEECTTCCEEEEESCEEEETTSCCC-CSEEECSCSEECCSCHHHHHHSCEETTCEEEECSCC
T ss_pred eEEEeccCCcccccceEEEEecCCCccccccccccccccCCCc-hhhhccCCcccccCcchhhccCCcccCCeEEeecCC
Confidence 013477776665 689999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHH
Q 008638 236 GVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTG 315 (558)
Q Consensus 236 g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta 315 (558)
|+|||+|+++++++ .+.++|||++||||+||++|++++|.|.....++ +..++||++|++|||+||++|++++|+|
T Consensus 237 g~GKT~L~~~ia~~---~~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g-~~~m~rtvvV~~tsd~p~~~r~~~~~~a 312 (588)
T 3mfy_A 237 GSGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTG-KPLMERTVLIANTSNMPVAAREASIYTG 312 (588)
T ss_dssp SHHHHHHHHHHHHH---SSCSEEEEEECCSSSSHHHHHHHHTTTCEETTTT-EEGGGGEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhc---cCCCEEEEEEecccHHHHHHHHHHHHHhcccccc-cccccceEEEEECCCCCHHHHHHHHHHH
Confidence 99999999887543 2458999999999999999999999874322222 2256799999999999999999999999
Q ss_pred HHHHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcC-------CCCCceeeEEE
Q 008638 316 LTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITT-------TKKGSITSVQA 388 (558)
Q Consensus 316 ~tiAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~-------~~~GSIT~i~~ 388 (558)
+|+|||||| +|+||||++||+||||+|+||||+++||||+++||||+++++|++|||||++ +++||||+|++
T Consensus 313 ~tiAEyfrd-~G~dVLl~~DsltR~A~A~rEis~~lge~P~~~GYp~~l~s~L~~l~ERAg~~~~~~~~~~~GSIT~i~~ 391 (588)
T 3mfy_A 313 ITIAEYFRD-MGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGA 391 (588)
T ss_dssp HHHHHHHHH-TTCEEEEEEECTTTCCCCC----------------CCHHHHHHHHHHTTCEEEECSSSSCCEEEEEEEEE
T ss_pred HHHHHHHHH-cCCCEEEeecchHHHHHHHHHHHHhccCCCccccCCchhhhhhhHHHhccccccccCCCCCCcceEEEEE
Confidence 999999999 7999999999999999999999999999999999999999999999999975 46899999999
Q ss_pred EeecCCCCCCchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCC------CccChHHHHHHHHHHHHHHccHH
Q 008638 389 IYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSP------HILGEEHYNTARGVQKVLQNYKN 462 (558)
Q Consensus 389 V~v~~dD~~dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~------~~~~~~h~~~a~~~r~~La~y~e 462 (558)
|++|+||++||||+++++|+||||+|||+||++||||||||+.|+||++++ .+++++|++++++++++|++|+|
T Consensus 392 v~~~gdD~sdpi~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~i~~~~~~~~~~~h~~~a~~~~~~La~~~e 471 (588)
T 3mfy_A 392 VSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESE 471 (588)
T ss_dssp CCCTTSCSSCSHHHHHHHHCSEECCBCHHHHHTTCSSCBCTTTCEETTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCcchHHHHHhccCeeecCHHHHhCCCCCCcCcccchhhhcccccchhhccCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999864 24789999999999999999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHH-HhhCCCCCccchhcCCCCceecHHHHHHHH
Q 008638 463 LQDIIAILGMDELSEDDKLTVARARKIQ-RFLSQPFHVAEVFTGAPGKYVELKESIASF 520 (558)
Q Consensus 463 l~~ii~i~G~~~l~~~~~~~v~~~~~i~-~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~ 520 (558)
++++++++|+|+|+++|++++++|++|+ +||+|++|......+.+.+.+.+.++|..|
T Consensus 472 l~~ii~i~G~d~Ls~~dk~~l~~ar~i~e~fL~Q~~f~~~d~~~~~~k~~~~l~~i~~~ 530 (588)
T 3mfy_A 472 LQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNF 530 (588)
T ss_dssp HHHHHHHHCSTTCCHHHHHHHHHHHHHHHHTTCCCTTSTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCccCCHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999997 699999888654444555555544444333
No 15
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=100.00 E-value=9.1e-79 Score=640.24 Aligned_cols=350 Identities=17% Similarity=0.215 Sum_probs=301.7
Q ss_pred hceEEeccCceeEEee--eeecCCceEEEEE-eccccCcccCceEEecCCCceeccCccccceEEEEecccccc-cCCCc
Q 008638 111 TALEVVDHSVRLVLEV--AQHMGEGVVRTIA-MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDE-KGDLK 186 (558)
Q Consensus 111 ~~Lev~~~~~~lv~EV--~~~lg~~~Vr~i~-l~~t~GL~~G~~V~~tg~~~~VpVG~~lLGRV~d~lG~PiD~-~~~i~ 186 (558)
+.|++...+..+++.- -+..+++.+.+-+ .-...+|+.||.|.+..++.+-..-...|+||.+++|.+.+. +..+.
T Consensus 60 g~le~~~~g~gflr~~~~~y~~~~~d~yvs~~~ir~~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~p~~~~~r~~ 139 (427)
T 3l0o_A 60 GVLEIHPEGFGFLRRIEDNLLPSNDDIYISPSQIRKFNLNTGDIISGVIRKPKEGEKYFAMIKIEAINYRPVEAVNDRVN 139 (427)
T ss_dssp EEEEECTTSCEEEECGGGTTCCCSSCEEECHHHHHHTTCCTTCEEEEEEECCCSSSCSEEEEEEEEETTEEC----CCCC
T ss_pred EEEEEcCCCceEeeCCccCCCCCCCCeeeCHHHHHhcCCCCCCEEEEEEeCCCCCcccccceEEEecCCCChHHhccccc
Confidence 3455544445566555 4556777774432 345689999999998877665444446889999999987764 55666
Q ss_pred ccccccccCCCCccccccccc-ceeeeeeeEeecccccccCceeeeecCCCCChhHHHHHHHHHHHhhcCC-EEEEEEec
Q 008638 187 TEHYLPIHREAPAFVEQATEQ-QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-FSVFAGVG 264 (558)
Q Consensus 187 ~~~~~pI~~~~p~~~~R~~~~-e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~-v~V~~~iG 264 (558)
+++..|++ |.+|..+. ++++||||+||+|+|||||||++||||+|+|||+|+++|+++.+++|++ .|||++||
T Consensus 140 fe~l~Pi~-----P~~R~~le~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIG 214 (427)
T 3l0o_A 140 FDNLTPDY-----PRERFILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLID 214 (427)
T ss_dssp GGGSCEEC-----CCSBCCCCCSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECS
T ss_pred cccCCCCC-----chhhccccccchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEec
Confidence 77766665 46666666 8999999999999999999999999999999999999999888777777 57999999
Q ss_pred CCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHHH
Q 008638 265 ERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQAN 344 (558)
Q Consensus 265 ER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A~ 344 (558)
||++||+|++++|. .++|++|+|+||.+|++++++|+|+|||||| +|+||||++||+||||+|+
T Consensus 215 ER~~EV~d~~~~~~---------------G~VV~atadep~~~r~~~a~~altiAEyfrd-~G~dVLil~DslTR~A~A~ 278 (427)
T 3l0o_A 215 ERPEEVTDIRESTN---------------AIVIAAPFDMPPDKQVKVAELTLEMAKRLVE-FNYDVVILLDSLTRLARVY 278 (427)
T ss_dssp CCHHHHSSSSSSCC---------------SEEEECCTTSCHHHHHHHHHHHHHHHHHHHH-TTCEEEEEEECHHHHHHHH
T ss_pred cCcchHHHHHHHhC---------------CeEEEECCCCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEecccchHHHHHH
Confidence 99999988776651 2789999999999999999999999999999 8999999999999999999
Q ss_pred HHHHhhhCCCCCCCCCCCccccchhhhHhhhcC-CCCCceeeEEEEeec-CCCCCCchhhhHhhhcCcEEEeehhhhhcC
Q 008638 345 SEVSALLGRIPSAVGYQPTLATDLGGLQERITT-TKKGSITSVQAIYVP-ADDLTDPAPATTFAHLDATTVLSRQISELG 422 (558)
Q Consensus 345 rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~-~~~GSIT~i~~V~v~-~dD~~dpip~~~~~ilDg~ivLsr~LA~~g 422 (558)
||||+++||+|+ .||||++++.+++|+|||++ +++||||+|+||+++ +||++|||++++++|+||||||||+||++|
T Consensus 279 rEvs~~~Ge~~s-~Gypp~~~~~~~~~~erA~~ie~~GSIT~i~tvlvetgdd~~dpI~d~~~~i~dg~IvLsR~La~~g 357 (427)
T 3l0o_A 279 NIVVPPSGKLLT-GGVDPAALYKPKRFFGAARNTREGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELVLSRQLANKR 357 (427)
T ss_dssp HHHSCCCSCCCS-SSCCSSCSHHHHHHHHTCEEESSSCEEEEEEEEECSSSCSHHHHHHHHTTTCCSEEEEBCHHHHTTT
T ss_pred HHHHHhcCCCCC-CCcCchhhcchHHHHHhhcccCCCcceeEEEEEEecCCCCcCCcchHHhcccCCceEEEeHHHHhCC
Confidence 999999999999 59999999999999999987 579999999999999 899999999999999999999999999999
Q ss_pred CcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCChhHHHHH
Q 008638 423 IYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTV 483 (558)
Q Consensus 423 ~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~~~~~v 483 (558)
|||||||+.|+||++ +.+++++|+++++.+|++|++|++++++.++++.-..+..+..-+
T Consensus 358 iyPAIDvl~S~SR~~-~~l~~~~h~~~a~~lr~~la~y~e~e~l~~ll~~~~~t~~n~~f~ 417 (427)
T 3l0o_A 358 IFPAINLLLSGTRRE-ELLLDEETLKKVWLLRRMLSAMTEEEGLTLILNKLSETSSNEEFL 417 (427)
T ss_dssp CSSCBCSTTCEETTG-GGTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCSSHHHHH
T ss_pred CCCccCccccccccc-cccCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCHHHHH
Confidence 999999999999995 888899999999999999999999999999988766666665433
No 16
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=100.00 E-value=2.2e-75 Score=615.47 Aligned_cols=348 Identities=17% Similarity=0.225 Sum_probs=297.3
Q ss_pred hceEEeccCceeEEee--eeecCCceEEEEE-eccccCcccCceEEecCCCceeccCccccceEEEEecccccc-cCCCc
Q 008638 111 TALEVVDHSVRLVLEV--AQHMGEGVVRTIA-MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDE-KGDLK 186 (558)
Q Consensus 111 ~~Lev~~~~~~lv~EV--~~~lg~~~Vr~i~-l~~t~GL~~G~~V~~tg~~~~VpVG~~lLGRV~d~lG~PiD~-~~~i~ 186 (558)
+.|++...+..+++.- -+..+++.+.+-+ .-...+|+.||.|.+.-++.+----..-|-+|-.++|.+.+. ++.+.
T Consensus 56 g~le~~~~g~gflr~~~~~~~~~~~d~yvs~~~ir~~~lr~gd~v~g~~r~~~~~ER~faLl~v~~vn~~~pe~~~~ri~ 135 (422)
T 3ice_A 56 GVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKIL 135 (422)
T ss_dssp EEEEECTTSCEEEECGGGTTCCCTTCEEBCHHHHHHHTCCTTCEEEEEEECCCSSCCSEEEEEEEEESSSCHHHHTTSCC
T ss_pred EEEEEcCCCceEeeCCCcCCCCCCCCeeeCHHHHHhcCCCCCCEEEEEEeCCCccchHHHHhccCcccCCChhhhcCCce
Confidence 3455554445555543 4556777774332 335579999999988655433211223455777777776653 67888
Q ss_pred ccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCE-EEEEEecC
Q 008638 187 TEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGF-SVFAGVGE 265 (558)
Q Consensus 187 ~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v-~V~~~iGE 265 (558)
+++..|+++.....+++.. .+|++||||+||+++||+||||++|||++|+|||+|+++++++++++|+++ |||++|||
T Consensus 136 Fe~ltp~yP~er~~Le~~~-~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGE 214 (422)
T 3ice_A 136 FENLTPLHANSRLRMERGN-GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDE 214 (422)
T ss_dssp TTTSCEESCCSBCCCCCTT-CCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESS
T ss_pred eccccccCCCCccccccCC-CCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecC
Confidence 9999999977665555432 379999999999999999999999999999999999999988887777774 89999999
Q ss_pred CchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHHHH
Q 008638 266 RTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANS 345 (558)
Q Consensus 266 R~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A~r 345 (558)
|++|++|+++++ ++++|++|+|+||.+|++++++|+|+|||||| +|+||||++||+||||+|||
T Consensus 215 R~~Ev~~~~~~~---------------~~~vV~atadep~~~r~~~a~~alt~AEyfrd-~G~dVLil~DslTR~A~A~r 278 (422)
T 3ice_A 215 RPEEVTEMQRLV---------------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVE-HKKDVIILLDSITRLARAYN 278 (422)
T ss_dssp CHHHHHHHHTTC---------------SSEEEEECTTSCHHHHHHHHHHHHHHHHHHHH-TSCEEEEEEECHHHHHHHHH
T ss_pred ChHHHHHHHHHh---------------CeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCEEEEEeCchHHHHHHH
Confidence 999998876654 47899999999999999999999999999999 89999999999999999999
Q ss_pred HHHhhhCCCCCCCCCCCccccchhhhHhhhcC-CCCCceeeEEEEeec-CCCCCCchhhhHhhhcCcEEEeehhhhhcCC
Q 008638 346 EVSALLGRIPSAVGYQPTLATDLGGLQERITT-TKKGSITSVQAIYVP-ADDLTDPAPATTFAHLDATTVLSRQISELGI 423 (558)
Q Consensus 346 Eis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~-~~~GSIT~i~~V~v~-~dD~~dpip~~~~~ilDg~ivLsr~LA~~g~ 423 (558)
|||+++||+|+ +||||++|+.+++|+|||++ +++||||+|+||++| +||++|||++++++|+||||+|||+||++||
T Consensus 279 evs~~~Ge~ps-~Gyp~~~~~~~~rl~erA~~~~~~GSIT~i~tvlv~tgdd~~dpI~d~~~~i~dg~ivLsR~La~~gi 357 (422)
T 3ice_A 279 TVVPASGKVLT-GGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRV 357 (422)
T ss_dssp HHSCCSSCBCS-SSCBHHHHHHHHHHHTTCEEESSSCEEEEEEEECCSSSCHHHHHHHHHHHHHCSEEEEBCHHHHHTTC
T ss_pred HHHHhcCCCCC-CCcCHHHHhhhHHHHHhccccCCCcceeEEEEEEecCCCcccchHHHHhcccCCceEEEcHHHHhcCC
Confidence 99999999998 89999999999999999997 579999999999999 8999999999999999999999999999999
Q ss_pred cCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCCh
Q 008638 424 YPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSE 477 (558)
Q Consensus 424 yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~ 477 (558)
||||||+.|+||++ +.+++++|+++++++|++|++|++++++.++++.-.-..
T Consensus 358 yPAIDvl~S~SR~~-~~~~~~~~~~~a~~lr~~la~~~e~~~~~~ll~~~~~t~ 410 (422)
T 3ice_A 358 FPAIDYNRSGTRKE-ELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTK 410 (422)
T ss_dssp SSCBCTTTCEESSG-GGSSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHTTTTSC
T ss_pred CCccCccccccccc-hhhCCHHHHHHHHHHHHHHHhCchHHHHHHHHHHhhcCC
Confidence 99999999999996 778899999999999999999999999999988654333
No 17
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=100.00 E-value=9.8e-71 Score=592.25 Aligned_cols=415 Identities=25% Similarity=0.416 Sum_probs=372.3
Q ss_pred CceeeEEEEECCeEEEEeCCCCchhhhceEEec-cCc---eeEEeeeeecCCceEEEEEeccccCcccCceEEecCC---
Q 008638 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVD-HSV---RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGS--- 157 (558)
Q Consensus 85 ~~~G~V~~V~G~VVdv~F~~gLp~i~~~Lev~~-~~~---~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~--- 157 (558)
..+|+|++|.|++++|++. .+.+...+++.. .+. .+.+||+. ++++.+++++|+++.||.+|+.|..||+
T Consensus 8 ~~~g~v~~v~g~~~~~~~~--~~~~~e~~~~~~~~~~~~~~~~~ev~~-~~~~~~~~~~~~~~~gl~~g~~v~~~~~~~~ 84 (438)
T 2dpy_A 8 RRYGRLTRATGLVLEATGL--QLPLGATCIIERQDGPETKEVESEVVG-FNGQRLFLMPLEEVEGILPGARVYARNGHGD 84 (438)
T ss_dssp CCCEEEEECSSSSEEEESC--CCCSSCEEEEEECSTTSCEEEEEEEEE-CCTTCEEEEESSCCTTCCTTEEEEEC-----
T ss_pred ceeeEEEEEECcEEEEEeC--CCCCCCEEEEecCCCCccccEEEEEEE-EcCCEEEEEEccCCCCCCCCCEEEECCCccc
Confidence 3479999999999999965 344544455543 222 57899986 6999999999999999999999999999
Q ss_pred ----CceeccCccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeec
Q 008638 158 ----PITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFG 233 (558)
Q Consensus 158 ----~~~VpVG~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfG 233 (558)
++++|+|+++||||+|++|+|+|+.+++....+||++.++|+++++..++.++.||+++||.++||++||+++|||
T Consensus 85 ~~~~~~~v~~g~~~lgrv~~~lg~p~d~~~~~~~~~~~~i~~~~~~~l~~~~v~~~~~tg~~vld~vl~i~~Gq~~~IvG 164 (438)
T 2dpy_A 85 GLQSGKQLPLGPALLGRVLDGGGKPLDGLPAPDTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFA 164 (438)
T ss_dssp -----CEEECSGGGTTEEECTTCCBSSSSCCCCCSCEEESCCCCCCTTTSCCCCSBCCCSCHHHHHHSCCBTTCEEEEEE
T ss_pred cccccEEEEcchhhhhhhhhccCCccCCCCCccccccccccCCCCCceEEeccceecCCCceEEeeeEEecCCCEEEEEC
Confidence 9999999999999999999999999888778889999988889999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHH
Q 008638 234 GAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313 (558)
Q Consensus 234 g~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ 313 (558)
++|+|||||+..|+. +. +.+..+|.++|+|++|++++.+++.+.+ .+.+++.++.|+++|+..|+.+++
T Consensus 165 ~sGsGKSTLl~~Iag-~~--~~~~G~i~~~G~r~~ev~~~~~~~~~~~--------~l~r~i~~v~q~~~~~~~~~~v~~ 233 (438)
T 2dpy_A 165 GSGVGKSVLLGMMAR-YT--RADVIVVGLIGERGREVKDFIENILGPD--------GRARSVVIAAPADVSPLLRMQGAA 233 (438)
T ss_dssp CTTSSHHHHHHHHHH-HS--CCSEEEEEEESCCHHHHHHHHHTTTHHH--------HHHTEEEEEECTTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhc-cc--CCCeEEEEEeceecHHHHHHHHhhcccc--------ccCceEEEEECCCCCHHHHHHHHH
Confidence 999999999865554 43 3567789999999999988776543222 124788999999999999999999
Q ss_pred HHHHHHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCC--CCCceeeEEEEee
Q 008638 314 TGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTT--KKGSITSVQAIYV 391 (558)
Q Consensus 314 ta~tiAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~--~~GSIT~i~~V~v 391 (558)
.++++||||++ ++++|+.++|+++||+.++++|++++++||...||+|+.++.+.+++||+++. ++||||+++||++
T Consensus 234 ~~~~~ae~~~~-~~~~v~~~ld~l~~lS~g~qrvslAl~~p~~t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv 312 (438)
T 2dpy_A 234 YATRIAEDFRD-RGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLT 312 (438)
T ss_dssp HHHHHHHHHHT-TTCEEEEEEECHHHHHHHHHHHHHHTTCCCCSSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEEC
T ss_pred HHHHHHHHHHh-CCCCHHHHHHhHHHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEE
Confidence 99999999998 79999999999999999999999999999999999999999999999999875 5699999999999
Q ss_pred cCCCCCCchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhc
Q 008638 392 PADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILG 471 (558)
Q Consensus 392 ~~dD~~dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G 471 (558)
+++|+++|++++++.+.||+|+|++++++.++||||||+.|+||+++ .+.+++|++++++++++|++|++++++++++|
T Consensus 313 ~tHdl~~~iad~v~~l~dG~Ivl~~~~~~~~~~Paidv~~s~sR~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 391 (438)
T 2dpy_A 313 EGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMT-ALITEQHYARVRLFKQLLSSFQRNRDLVSVGA 391 (438)
T ss_dssp SSSCSCCHHHHHHHHHSSEEEEECHHHHHTTCSSCEEEEEEEETTHH-HHSCHHHHHHHHHHHHHHHHHHHGGGTSSSSC
T ss_pred eCCCccchhhceEEEEeCcEEEEeCCHHHccCCCCcCCccccccccc-ccCCHHHHHHHHHHHHHHHhhHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999974 46799999999999999999999999999999
Q ss_pred CCCCChhH-HHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHc
Q 008638 472 MDELSEDD-KLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLD 525 (558)
Q Consensus 472 ~~~l~~~~-~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~ 525 (558)
|+++++++ +.++.++++|++||+|+++. +++++||+..+..|+.
T Consensus 392 ~~~~~d~~~~~~i~~~~~~~~fl~Q~~~~----------~~~~~~~~~~~~~~~~ 436 (438)
T 2dpy_A 392 YAKGSDPMLDKAITLWPQLEAFLQQGIFE----------RADWEDSLQALDLIFP 436 (438)
T ss_dssp CCTTSCHHHHHHHTTHHHHHHHHCCCTTC----------CCCHHHHHHHHHHHSC
T ss_pred CcCCCCHHHHHHHHHHHHHHHHcCCCCCC----------CCCHHHHHHHHHHHHh
Confidence 98887665 78999999999999999876 8999999999999875
No 18
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=100.00 E-value=2.3e-69 Score=565.71 Aligned_cols=343 Identities=29% Similarity=0.449 Sum_probs=318.3
Q ss_pred CceeccCccccceEEEEecccccccC-CCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCC
Q 008638 158 PITVPVGRVTLGRIMNVIGEPIDEKG-DLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAG 236 (558)
Q Consensus 158 ~~~VpVG~~lLGRV~d~lG~PiD~~~-~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g 236 (558)
+++||||+++||||+|++|+|||+++ ++...++||++.++|+++++..+++++.||+++||.++||++||+++|||++|
T Consensus 2 ~~~~~vg~~~lGrv~~~~g~p~d~~~~~~~~~~~~~i~~~~~~~i~~~~l~~~~~tg~~ald~ll~i~~Gq~~gIiG~nG 81 (347)
T 2obl_A 2 SHKIRVGDALLGRLIDGIGRPMESNIVAPYLPFERSLYAEPPDPLLRQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSG 81 (347)
T ss_dssp CCEEEECGGGTTCEECTTSCBCSCCSSCCCCCEEEESCCCCSCSTTCCCCCSEECCSCHHHHHHSCEETTCEEEEEECTT
T ss_pred CceeecCccccCCEECCCCCcCCCCCCCCCCCCcccccCCCCCCeeecccceecCCCCEEEEeeeeecCCCEEEEECCCC
Confidence 68999999999999999999999998 88888899999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHH
Q 008638 237 VGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316 (558)
Q Consensus 237 ~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~ 316 (558)
+|||||+..|+. +. +++..+|+++|||++|+.+++..+.+ + .+++++++++++++|+..|+++++.++
T Consensus 82 aGKTTLl~~I~g-~~--~~~~g~i~~~G~~~~ev~~~i~~~~~-~--------~~~~~v~~~~~~~~~~~~r~~~~~~~~ 149 (347)
T 2obl_A 82 VGKSTLLGMICN-GA--SADIIVLALIGERGREVNEFLALLPQ-S--------TLSKCVLVVTTSDRPALERMKAAFTAT 149 (347)
T ss_dssp SSHHHHHHHHHH-HS--CCSEEEEEEESCCHHHHHHHHTTSCH-H--------HHTTEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhc-CC--CCCEEEEEEecccHHHHHHHHHhhhh-h--------hhhceEEEEECCCCCHHHHHHHHHHHH
Confidence 999999865554 33 35788999999999999776544211 1 235789999999999999999999999
Q ss_pred HHHHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCC
Q 008638 317 TVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDL 396 (558)
Q Consensus 317 tiAEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~ 396 (558)
++||||+| +|+||++++|+++||++|+||+++++++||...||||++++.+.+|+||++++++||||+++||+++++|+
T Consensus 150 ~~ae~~~~-~~~~vl~~ld~~~~lS~g~r~v~lal~~p~~t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl 228 (347)
T 2obl_A 150 TIAEYFRD-QGKNVLLMMDSVTRYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNV 228 (347)
T ss_dssp HHHHHHHT-TTCEEEEEEETHHHHHHHHHHHHHHTTCCCCBTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCC
T ss_pred HHHHHHHh-ccccHHHHHhhHHHHHHHHHHHHHHcCCCCcccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCC
Confidence 99999999 89999999999999999999999999999999999999999999999999875679999999999999999
Q ss_pred CCchhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCC
Q 008638 397 TDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELS 476 (558)
Q Consensus 397 ~dpip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~ 476 (558)
++|++++++.+.||+|+|++.+++.++||||||+.|+||+++. +++++|+++++++|++|++|+|++++++++||++++
T Consensus 229 ~~~i~d~v~~i~dG~Ivl~~~l~~~~~~Paid~~~S~sr~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 307 (347)
T 2obl_A 229 NDPIGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASRVMHN-VVTSEHLRAAAECKKLIATYKNPELLIRIGEYTMGQ 307 (347)
T ss_dssp CCHHHHHHHHHCSEEEEBCHHHHTTTCSSCBCGGGCEETTHHH-HSCHHHHHHHHHHHHHHHHCCCTHHHHTTTCCCCCS
T ss_pred CChhhhheEEeeCcEEEEeCCHHHcCCCCCcCccccccccccc-cCCHHHHHHHHHHHHHHHccHHHHHHHHhcCCcCCC
Confidence 9999999999999999999999999999999999999999854 789999999999999999999999999999999887
Q ss_pred hhH-HHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHH
Q 008638 477 EDD-KLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVL 524 (558)
Q Consensus 477 ~~~-~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il 524 (558)
+++ +.+++++++|++||+|+++. +++++||+..+..|+
T Consensus 308 ~~~~~~~~~~~~~~~~fl~Q~~~~----------~~~~~~~~~~~~~~~ 346 (347)
T 2obl_A 308 DPEADKAIKNRKLIQNFIQQSTKD----------ISSYEKTIESLFKVV 346 (347)
T ss_dssp CHHHHHHHHTHHHHHHHHCCCTTC----------CCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCC----------CCCHHHHHHHHHHHh
Confidence 776 88999999999999999876 899999999999886
No 19
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.51 E-value=7.6e-05 Score=71.44 Aligned_cols=63 Identities=32% Similarity=0.459 Sum_probs=51.2
Q ss_pred ceeeeeeeEeecccc--cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhH
Q 008638 208 QILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG 270 (558)
Q Consensus 208 e~l~TGIkvID~l~P--igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv 270 (558)
+-+.||++.+|-++. +.+|+-+.|.|++|+|||+|+.+++.|.+..++..++|+-.-+..+++
T Consensus 10 ~ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~ 74 (251)
T 2zts_A 10 RRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDL 74 (251)
T ss_dssp CEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHH
T ss_pred CeecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHH
Confidence 448999999999997 999999999999999999999999877655544556666666655444
No 20
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.43 E-value=0.00014 Score=75.41 Aligned_cols=111 Identities=14% Similarity=0.216 Sum_probs=70.8
Q ss_pred ceeeeeeeEeecccc------cccCceeeeecCCCCChhHHHHHHHHHHHhhc-CCEEEEEEecCCchhHHHHHHHHHHh
Q 008638 208 QILVTGIKVVDLLAP------YQRGGKIGLFGGAGVGKTVLIMELINNVAKAH-GGFSVFAGVGERTREGNDLYREMIES 280 (558)
Q Consensus 208 e~l~TGIkvID~l~P------igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~-~~v~V~~~iGER~rEv~d~~~e~~e~ 280 (558)
+.+.||+..+|.++- +.+| .+.|+|++|+|||+|+.+++.+.++.+ ++.++|+-.-+..+.. .+...
T Consensus 5 ~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~l 78 (333)
T 3io5_A 5 DVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSM 78 (333)
T ss_dssp -CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHT
T ss_pred CEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHh
Confidence 458899999999998 8899 999999999999999999998876643 4677886433332221 13333
Q ss_pred cccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHh--HHhCCCcEEeecccchhHH
Q 008638 281 GVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF--RDAEGQDVLLFIDNIFRFT 341 (558)
Q Consensus 281 ~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyf--Rd~~G~dVLl~~DsltR~a 341 (558)
|+- .++ ++++. .+ ..++. ++.+++.. -. .+.--|+++||++-+.
T Consensus 79 Gvd-------~d~-llv~~-~~--~~E~~-----~l~i~~~l~~i~-~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 79 GVD-------PER-VIHTP-VQ--SLEQL-----RIDMVNQLDAIE-RGEKVVVFIDSLGNLA 124 (333)
T ss_dssp TCC-------GGG-EEEEE-CS--BHHHH-----HHHHHHHHHTCC-TTCCEEEEEECSTTCB
T ss_pred CCC-------HHH-eEEEc-CC--CHHHH-----HHHHHHHHHHhh-ccCceEEEEecccccc
Confidence 421 123 33332 22 12222 13333333 12 4778899999998664
No 21
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.37 E-value=0.00015 Score=68.26 Aligned_cols=58 Identities=29% Similarity=0.394 Sum_probs=45.8
Q ss_pred ceeeeeeeEeecccc--cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCC
Q 008638 208 QILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266 (558)
Q Consensus 208 e~l~TGIkvID~l~P--igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER 266 (558)
+.+.||++.+|-++. +.+|+-++|.|++|+|||+|+..++.+.+.. ++-++|....+.
T Consensus 3 ~~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~-~~~v~~~~~~~~ 62 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD-GDPCIYVTTEES 62 (235)
T ss_dssp CEECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH-TCCEEEEESSSC
T ss_pred ccccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC-CCeEEEEEcccC
Confidence 457899999999985 8999999999999999999999888766543 333455554443
No 22
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.34 E-value=0.00015 Score=69.50 Aligned_cols=44 Identities=32% Similarity=0.469 Sum_probs=38.8
Q ss_pred ceeeeeeeEeeccc--ccccCceeeeecCCCCChhHHHHHHHHHHH
Q 008638 208 QILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 208 e~l~TGIkvID~l~--PigkGqr~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
+.+.||+..+|-++ -+.+|+-++|+|++|+|||||+..++.+..
T Consensus 10 ~~i~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 10 RRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp CEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceeecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 55899999999988 699999999999999999999988775443
No 23
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.16 E-value=0.00093 Score=69.49 Aligned_cols=111 Identities=23% Similarity=0.382 Sum_probs=70.0
Q ss_pred cceeeeeeeEeecccc---cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhccc
Q 008638 207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283 (558)
Q Consensus 207 ~e~l~TGIkvID~l~P---igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~ 283 (558)
.+.+.||+..+|-++. +-+|.-+.|.|++|+|||+|+..++.+.++. +..++|+-..+..... + ....|+.
T Consensus 39 ~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~-g~~vlyi~~E~~~~~~---~--a~~lG~~ 112 (349)
T 2zr9_A 39 ISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA-GGIAAFIDAEHALDPE---Y--AKKLGVD 112 (349)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHH---H--HHHTTCC
T ss_pred CCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCcCHH---H--HHHcCCC
Confidence 4568999999999887 6699999999999999999999999887654 3445565443322221 1 1222321
Q ss_pred ccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHH
Q 008638 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (558)
Q Consensus 284 ~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a 341 (558)
.++ ..++. .+ ...+ .+.+++.+.. +++--+|++|+++-+.
T Consensus 113 -------~~~-l~i~~-~~--~~e~------~l~~~~~l~~-~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 113 -------TDS-LLVSQ-PD--TGEQ------ALEIADMLVR-SGALDIIVIDSVAALV 152 (349)
T ss_dssp -------GGG-CEEEC-CS--SHHH------HHHHHHHHHT-TTCCSEEEEECGGGCC
T ss_pred -------HHH-eEEec-CC--CHHH------HHHHHHHHHh-cCCCCEEEEcChHhhc
Confidence 112 22332 11 1222 2345665554 3555688999999665
No 24
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.10 E-value=0.00077 Score=70.54 Aligned_cols=57 Identities=32% Similarity=0.582 Sum_probs=46.7
Q ss_pred ceeeeeeeEeecccc---cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCC
Q 008638 208 QILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266 (558)
Q Consensus 208 e~l~TGIkvID~l~P---igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER 266 (558)
+.+.||+..+|-++. +.+|.-+.|+|++|+|||+|+..++.+.++. ++.++|+ -+|.
T Consensus 40 ~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~-gg~VlyI-d~E~ 99 (356)
T 3hr8_A 40 EVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM-GGVAAFI-DAEH 99 (356)
T ss_dssp CEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEE-ESSC
T ss_pred ceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEE-eccc
Confidence 568999999999988 7899999999999999999999999876543 3445565 3443
No 25
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.09 E-value=0.00039 Score=66.38 Aligned_cols=58 Identities=28% Similarity=0.384 Sum_probs=45.9
Q ss_pred ceeeeeeeEeeccc--ccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCC
Q 008638 208 QILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266 (558)
Q Consensus 208 e~l~TGIkvID~l~--PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER 266 (558)
+.+.||++.+|-++ -+.+|+-++|.|++|+|||+|+..++.+.++. +.-++|+..-+.
T Consensus 3 ~~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-~~~v~~~~~e~~ 62 (247)
T 2dr3_A 3 RRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKM-GEPGIYVALEEH 62 (247)
T ss_dssp CEECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEESSSC
T ss_pred ccccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccCC
Confidence 45789999999886 57899999999999999999999998887654 334555554443
No 26
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.09 E-value=0.00029 Score=66.25 Aligned_cols=39 Identities=31% Similarity=0.371 Sum_probs=36.4
Q ss_pred eeeeeeEeecccc--cccCceeeeecCCCCChhHHHHHHHH
Q 008638 210 LVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 210 l~TGIkvID~l~P--igkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
+.||++.+|-++. +.+|+-++|.|++|+|||+|+..++.
T Consensus 2 i~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 2 LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999986 99999999999999999999988876
No 27
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.08 E-value=0.0013 Score=67.17 Aligned_cols=46 Identities=30% Similarity=0.327 Sum_probs=40.9
Q ss_pred cceeeeeeeEeeccc--ccccCceeeeecCCCCChhHHHHHHHHHHHh
Q 008638 207 QQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (558)
Q Consensus 207 ~e~l~TGIkvID~l~--PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~ 252 (558)
...+.||+..+|-++ -+-+|.-+.|+|++|+|||+|+..++.+.++
T Consensus 86 ~~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~ 133 (324)
T 2z43_A 86 VKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQL 133 (324)
T ss_dssp CCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCcccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhc
Confidence 467899999999998 5889999999999999999999999877543
No 28
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.00 E-value=0.0012 Score=68.18 Aligned_cols=45 Identities=24% Similarity=0.169 Sum_probs=40.3
Q ss_pred cceeeeeeeEeeccc--ccccCceeeeecCCCCChhHHHHHHHHHHH
Q 008638 207 QQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 207 ~e~l~TGIkvID~l~--PigkGqr~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
.+.+.||++.+|-++ -+-+|+-+.|+|++|+|||+|+..++.+.+
T Consensus 101 ~~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~ 147 (343)
T 1v5w_A 101 VFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQ 147 (343)
T ss_dssp CCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTT
T ss_pred cceeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 466899999999998 588999999999999999999999987743
No 29
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.96 E-value=0.00046 Score=65.89 Aligned_cols=43 Identities=28% Similarity=0.330 Sum_probs=38.9
Q ss_pred ceeeeeeeEeeccc--ccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 208 QILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 208 e~l~TGIkvID~l~--PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+.+.||+..+|-++ -+.+|+-++|.|++|+|||+|+..++.+.
T Consensus 4 ~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 4 IQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp CEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 56899999999998 58899999999999999999999887653
No 30
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.92 E-value=0.0019 Score=67.70 Aligned_cols=111 Identities=26% Similarity=0.368 Sum_probs=70.1
Q ss_pred cceeeeeeeEeecccc---cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhccc
Q 008638 207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283 (558)
Q Consensus 207 ~e~l~TGIkvID~l~P---igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~ 283 (558)
.+.+.||+..+|.++. +-+|.-+.|.|++|+|||+|+..++.+.++. +.-++|+-.-+..... + ....|+-
T Consensus 52 ~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~-g~~vlyi~~E~s~~~~---~--a~~~g~d 125 (366)
T 1xp8_A 52 VQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA-GGTCAFIDAEHALDPV---Y--ARALGVN 125 (366)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHH---H--HHHTTCC
T ss_pred CceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC-CCeEEEEECCCChhHH---H--HHHcCCC
Confidence 4678999999999987 7799999999999999999999999887654 3345555444332222 2 2222221
Q ss_pred ccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHH
Q 008638 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (558)
Q Consensus 284 ~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a 341 (558)
.++ +++. ..+ . .. -.+.+.+.+.. .+.--+||+|+++-+.
T Consensus 126 -------~~~-l~i~-~~~-~-~e------~~l~~l~~l~~-~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 126 -------TDE-LLVS-QPD-N-GE------QALEIMELLVR-SGAIDVVVVDSVAALT 165 (366)
T ss_dssp -------GGG-CEEE-CCS-S-HH------HHHHHHHHHHT-TTCCSEEEEECTTTCC
T ss_pred -------HHH-ceee-cCC-c-HH------HHHHHHHHHHh-cCCCCEEEEeChHHhc
Confidence 112 2232 222 1 12 22445566554 3555578999998654
No 31
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.86 E-value=0.0016 Score=67.92 Aligned_cols=111 Identities=21% Similarity=0.364 Sum_probs=69.0
Q ss_pred cceeeeeeeEeecccc---cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhccc
Q 008638 207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283 (558)
Q Consensus 207 ~e~l~TGIkvID~l~P---igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~ 283 (558)
.+.+.||+..+|-++. +-+|.-+.|.|++|+|||+|+..++.+.++. +.-++|+- .|.+.+- .+ ....|+-
T Consensus 41 ~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~-g~~vlyid-~E~s~~~--~~--a~~~g~~ 114 (356)
T 1u94_A 41 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFID-AEHALDP--IY--ARKLGVD 114 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEE-SSCCCCH--HH--HHHTTCC
T ss_pred CCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEe-CCCCccH--HH--HHHcCCC
Confidence 4568999999999987 7799999999999999999999999887654 23344443 3433221 11 2222311
Q ss_pred ccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHH
Q 008638 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (558)
Q Consensus 284 ~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a 341 (558)
..+ ..++ +.+ ...+ .+.+++.+.. ++.--+|++|+++-+.
T Consensus 115 -------~~~-l~i~-~~~--~~e~------~~~~~~~l~~-~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 115 -------IDN-LLCS-QPD--TGEQ------ALEICDALAR-SGAVDVIVVDSVAALT 154 (356)
T ss_dssp -------GGG-CEEE-CCS--SHHH------HHHHHHHHHH-HTCCSEEEEECGGGCC
T ss_pred -------hhh-eeee-CCC--CHHH------HHHHHHHHHh-ccCCCEEEEcCHHHhc
Confidence 112 2232 221 1222 2345555544 2444578999999765
No 32
>1pyv_A ATP synthase beta chain, mitochondrial precursor; hydrolase; NMR {Nicotiana plumbaginifolia} SCOP: j.36.4.1
Probab=96.86 E-value=0.00037 Score=51.33 Aligned_cols=51 Identities=53% Similarity=0.683 Sum_probs=36.0
Q ss_pred ChhhhHhHHHhhhhcccCCC--CCCCCCCc-cCCCcccccCCcchhhhhhHHHh
Q 008638 1 MASRRLLSSLLRSSVRRSPS--KSSLSNSS-VFSPAATRRASPYGHLLSRVSEY 51 (558)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 51 (558)
|++||+|++++|.+..++.- .-++.||- -+++...++++|.|.+++|+.+|
T Consensus 1 masrrllasllrqsaqrggglisrslgnsipksasrassraspkgfllnravqy 54 (54)
T 1pyv_A 1 MASRRLLASLLRQSAQRGGGLISRSLGNSIPKSASRASSRASPKGFLLNRAVQY 54 (54)
T ss_dssp -CCSHHHHHHHHHHHTTSSCSSSSTGGGGTTTTSTTTSTTCSHHHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHHHhCCceeehhhcccCcchhhhhhcccCccchhhhhhhcC
Confidence 89999999999998777331 12233332 13455588999999999999775
No 33
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.85 E-value=0.00031 Score=66.42 Aligned_cols=43 Identities=33% Similarity=0.335 Sum_probs=37.9
Q ss_pred ceeeeeeeEeeccc--ccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 208 QILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 208 e~l~TGIkvID~l~--PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+.+.||+..+|-++ -+.+|+.++|+|++|+|||||+..++.+.
T Consensus 5 ~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 5 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp CEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999877 68899999999999999999998776543
No 34
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.71 E-value=0.003 Score=66.98 Aligned_cols=47 Identities=32% Similarity=0.350 Sum_probs=41.0
Q ss_pred cccceeeeeeeEeeccc--ccccCceeeeecCCCCChhHHHHHHHHHHH
Q 008638 205 TEQQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 205 ~~~e~l~TGIkvID~l~--PigkGqr~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
.....+.||+..+|-++ -|-+|+-+.|+|++|+|||+|+..++.+..
T Consensus 155 ~~~~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~ 203 (400)
T 3lda_A 155 SELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQ 203 (400)
T ss_dssp HTSCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred ccCCccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhc
Confidence 34577999999999998 688999999999999999999998876543
No 35
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.62 E-value=0.0047 Score=62.52 Aligned_cols=44 Identities=20% Similarity=0.155 Sum_probs=39.9
Q ss_pred cceeeeeeeEeeccc--ccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 207 QQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 207 ~e~l~TGIkvID~l~--PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
...+.||+..+|-++ -+-+|+-+.|+|++|+|||+|+.+++.+.
T Consensus 77 ~~~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 77 VWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp CCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeecCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999998 58899999999999999999999998764
No 36
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.32 E-value=0.0024 Score=63.61 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=39.7
Q ss_pred ceeee-eeeEeecc-cccccCceeeeecCCCCChhHHHHHHHHHHHhhcC
Q 008638 208 QILVT-GIKVVDLL-APYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHG 255 (558)
Q Consensus 208 e~l~T-GIkvID~l-~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~ 255 (558)
.-+.| |++++|-+ .-+.+|+-++|.|++|+|||||+..++.+.+..++
T Consensus 15 ~~i~t~g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G 64 (296)
T 1cr0_A 15 VGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG 64 (296)
T ss_dssp CCBCCCSCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSC
T ss_pred CCcccCCHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC
Confidence 44778 99999865 46889999999999999999999988887665433
No 37
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=96.29 E-value=0.029 Score=56.17 Aligned_cols=62 Identities=8% Similarity=-0.083 Sum_probs=52.3
Q ss_pred eeeeeeEeecccc--cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHH
Q 008638 210 LVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGND 272 (558)
Q Consensus 210 l~TGIkvID~l~P--igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d 272 (558)
+.|||.-+|-++- +-+|.-++|.|++|+|||+|+.+++.+.++. ++-|+|+..-|...++..
T Consensus 3 i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~-Ge~~~~~~~~e~~~~l~~ 66 (260)
T 3bs4_A 3 LSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKS-DNLVGMFSISYPLQLIIR 66 (260)
T ss_dssp BCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHT-TCEEEEEECSSCHHHHHH
T ss_pred CccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHC-CCcEEEEEEeCCHHHHHH
Confidence 6799999999875 5689999999999999999999998876654 688999999998766543
No 38
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.17 E-value=0.0039 Score=61.74 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=39.3
Q ss_pred ccceeeeeeeEeecccc-cccCceeeeecCCCCChhHHHHHHHHHHHh
Q 008638 206 EQQILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (558)
Q Consensus 206 ~~e~l~TGIkvID~l~P-igkGqr~gIfGg~g~GKT~L~~~~i~n~a~ 252 (558)
..+.+.||+..+|.+++ +-+|+-++|+|++|+|||||+..++...++
T Consensus 9 ~~~~i~tg~~~ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 9 ILEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp HHHHHHSCCCCCCEEETTEETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCChheeECCccCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 45668899998887764 559999999999999999999988876553
No 39
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.99 E-value=0.0021 Score=66.61 Aligned_cols=45 Identities=31% Similarity=0.305 Sum_probs=39.7
Q ss_pred ccceeeeeeeEeeccc--ccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 206 EQQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 206 ~~e~l~TGIkvID~l~--PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
..+.+.||+..+|-++ -+-+|+-++|+|++|+|||+|+..++.+.
T Consensus 109 ~~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 109 TIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp TCCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999985 68899999999999999999999887764
No 40
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.93 E-value=0.015 Score=58.87 Aligned_cols=99 Identities=11% Similarity=0.140 Sum_probs=55.9
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHHHhhc----CCEE-EEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEE
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAH----GGFS-VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVY 298 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~----~~v~-V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~ 298 (558)
..+..+.|.|++|+|||+|+..+.+...... .++. +++-|.. .....+++.++.+. ++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~l~~~----l~~~~--------- 107 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH-RETPYRVASAIAEA----VGVRV--------- 107 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT-SCSHHHHHHHHHHH----HSCCC---------
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc-CCCHHHHHHHHHHH----hCCCC---------
Confidence 6678899999999999999988876653321 1333 4444443 23344555554432 11100
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHH
Q 008638 299 GQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343 (558)
Q Consensus 299 ~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A 343 (558)
.....+...-. -.+.+++.. .|+.++|++|++-++...
T Consensus 108 ~~~~~~~~~~~------~~l~~~l~~-~~~~~vlilDEi~~l~~~ 145 (387)
T 2v1u_A 108 PFTGLSVGEVY------ERLVKRLSR-LRGIYIIVLDEIDFLPKR 145 (387)
T ss_dssp CSSCCCHHHHH------HHHHHHHTT-SCSEEEEEEETTTHHHHS
T ss_pred CCCCCCHHHHH------HHHHHHHhc-cCCeEEEEEccHhhhccc
Confidence 00111121111 122344444 688999999999888654
No 41
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.90 E-value=0.0094 Score=73.41 Aligned_cols=115 Identities=17% Similarity=0.291 Sum_probs=75.8
Q ss_pred cccceeeeeeeEeecccc---cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhc
Q 008638 205 TEQQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (558)
Q Consensus 205 ~~~e~l~TGIkvID~l~P---igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~ 281 (558)
...+.+.|||..+|-++. +-+|.-+.|+|++|+|||+|+..++.+.++. +.-++|+-.-+-..+.. +...+
T Consensus 10 ~~~~~isTGi~~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~-G~~vlYI~te~~~~~l~-----~~~lg 83 (1706)
T 3cmw_A 10 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY-----ARKLG 83 (1706)
T ss_dssp --CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEECTTSCCCHHH-----HHHTT
T ss_pred ccCcccccCcHHHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhhC-CCceEEEEecCccHHHH-----HHhhc
Confidence 345679999999999875 8999999999999999999999998876653 44577887776555442 11212
Q ss_pred ccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHH
Q 008638 282 VIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343 (558)
Q Consensus 282 ~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A 343 (558)
. . .++. .++.. + ... ....+.+++.. .++.-+|++||++-+...
T Consensus 84 ~-d------l~~i-~i~~p-~--t~e------~l~~ll~~L~~-~~~~~LVVIDSLt~L~~~ 127 (1706)
T 3cmw_A 84 V-D------IDNL-LCSQP-D--TGE------QALEICDALAR-SGAVDVIVVDSVAALTPK 127 (1706)
T ss_dssp C-C------GGGC-EEECC-S--SHH------HHHHHHHHHHH-HTCCSEEEESCSTTCCCH
T ss_pred c-C------ccce-eeecc-C--cHH------HHHHHHHHHHh-ccCCCEEEEcchhhhccc
Confidence 1 0 1122 23322 1 111 22345566665 466779999999977654
No 42
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.89 E-value=0.0055 Score=62.36 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=45.2
Q ss_pred ceeeeeeeEeecccc-cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecC
Q 008638 208 QILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265 (558)
Q Consensus 208 e~l~TGIkvID~l~P-igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGE 265 (558)
..+.||++.+|-++- +.+|+-+.|.|++|+|||+|+.+++.+.+..+ ..|.....|
T Consensus 49 ~~i~TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE 105 (315)
T 3bh0_A 49 TGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE 105 (315)
T ss_dssp CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS
T ss_pred CCccCChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC
Confidence 458899999998874 77999999999999999999999998877642 344444455
No 43
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.77 E-value=0.0058 Score=65.27 Aligned_cols=59 Identities=25% Similarity=0.250 Sum_probs=46.0
Q ss_pred ceeeeeeeEeeccc-ccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCc
Q 008638 208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267 (558)
Q Consensus 208 e~l~TGIkvID~l~-PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~ 267 (558)
..+.||+..+|-++ -+.+|+-+.|.|++|+|||+|+..++.+.+..+ +..|.....|-+
T Consensus 184 ~~i~tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~s 243 (454)
T 2r6a_A 184 TGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEMS 243 (454)
T ss_dssp CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSSC
T ss_pred CCCCCCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCCC
Confidence 45889999999887 477999999999999999999999999887644 333333344433
No 44
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.70 E-value=0.013 Score=73.31 Aligned_cols=117 Identities=17% Similarity=0.293 Sum_probs=78.2
Q ss_pred cccccceeeeeeeEeecccc---cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHH
Q 008638 203 QATEQQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIE 279 (558)
Q Consensus 203 R~~~~e~l~TGIkvID~l~P---igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e 279 (558)
+.+..+.+.|||..+|-++- +-+|.-+.|.|++|+|||+|+++++.+.++. +.-++|+-.-+...+.. +..
T Consensus 8 ~~~~~~~i~TGi~~LD~lLg~GGip~G~vtlI~G~pGsGKT~lalq~a~~~~~~-Ge~vlYI~tEes~~~~r-----a~~ 81 (2050)
T 3cmu_A 8 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY-----ARK 81 (2050)
T ss_dssp ----CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECTTSCCCHHH-----HHH
T ss_pred hccCCCeeccCcHHHHHHHhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHhhcc-CCceEEEEccCcchhhH-----Hhh
Confidence 33455779999999999874 8899999999999999999999998876653 45688887777665552 222
Q ss_pred hcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHHH
Q 008638 280 SGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343 (558)
Q Consensus 280 ~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~A 343 (558)
.|. . .++. .++.. + ... ..+.+-+++.. .+.--+|++||++-+...
T Consensus 82 lG~-d------l~~i-~v~~p-~--~~e------~ll~il~~L~~-~~~~~lVVIDSISaL~~~ 127 (2050)
T 3cmu_A 82 LGV-D------IDNL-LCSQP-D--TGE------QALEICDALAR-SGAVDVIVVDSVAALTPK 127 (2050)
T ss_dssp TTC-C------TTTC-EEECC-S--SHH------HHHHHHHHHHH-HTCCSEEEESCGGGCCCH
T ss_pred hcc-C------cccc-eecCC-C--cHH------HHHHHHHHHHh-ccCCcEEEEcChHHhhhh
Confidence 221 1 1222 23322 1 112 23455666765 467789999999976654
No 45
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.56 E-value=0.02 Score=70.57 Aligned_cols=111 Identities=20% Similarity=0.347 Sum_probs=71.9
Q ss_pred cceeeeeeeEeecccc---cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhccc
Q 008638 207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283 (558)
Q Consensus 207 ~e~l~TGIkvID~l~P---igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~ 283 (558)
.+.+.||+..+|-++. +-+|.-+.|.|++|+|||+|+.+++.+.++. +..++|+-.-+..... + ....|+-
T Consensus 361 ~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~-G~~vlyis~E~s~~~~---~--a~~lGvd 434 (1706)
T 3cmw_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPI---Y--ARKLGVD 434 (1706)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEECTTSCCCHH---H--HHHTTCC
T ss_pred CceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchHHH---H--HHHcCCC
Confidence 4679999999999997 8899999999999999999999999887664 4556665444433332 2 2333321
Q ss_pred ccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHH
Q 008638 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (558)
Q Consensus 284 ~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a 341 (558)
. ++- .+ .+.+ + ..+ .+.+++.+.. ++.--++++|+++-+.
T Consensus 435 -~------~~L-~i-~~~~-~-~e~------~l~~l~~lv~-~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 435 -I------DNL-LC-SQPD-T-GEQ------ALEICDALAR-SGAVDVIVVDSVAALT 474 (1706)
T ss_dssp -G------GGC-EE-ECCS-S-HHH------HHHHHHHHHH-HTCCSEEEESCSTTCC
T ss_pred -H------HHe-EE-cCCC-C-HHH------HHHHHHHHHH-hcCCCEEEECCHHHhh
Confidence 1 122 22 2222 2 222 2334455444 3455588999998654
No 46
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.41 E-value=0.0086 Score=63.77 Aligned_cols=60 Identities=23% Similarity=0.173 Sum_probs=45.8
Q ss_pred ceeeeeeeEeecccc-cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCch
Q 008638 208 QILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTR 268 (558)
Q Consensus 208 e~l~TGIkvID~l~P-igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~r 268 (558)
..+.||+..+|-++- +.+|+-+.|.|++|+|||+|+..++.+.+..+ +..|.....|-+.
T Consensus 181 ~~i~tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE~~~ 241 (444)
T 2q6t_A 181 AGVRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLEMPA 241 (444)
T ss_dssp --CCCSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSSCH
T ss_pred CcccCCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECCCCH
Confidence 457899999998873 77999999999999999999999999887643 3344444555443
No 47
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.39 E-value=0.024 Score=70.79 Aligned_cols=111 Identities=18% Similarity=0.314 Sum_probs=79.6
Q ss_pred ccceeeeeeeEeeccc---ccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcc
Q 008638 206 EQQILVTGIKVVDLLA---PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGV 282 (558)
Q Consensus 206 ~~e~l~TGIkvID~l~---PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~ 282 (558)
..+.+.|||..+|-++ -+-+|..++|.|++|+|||+|+..++.+.++. +..++|+-.-|-..+.. ....|+
T Consensus 1058 ~~~~i~TGi~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea~k~-Ge~~~Fit~ee~~~~L~-----a~~~G~ 1131 (2050)
T 3cmu_A 1058 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY-----ARKLGV 1131 (2050)
T ss_dssp SCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECTTSCCCHHH-----HHHTTC
T ss_pred ccccccCCcHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEccccHHHHH-----HHHcCC
Confidence 3567899999999988 48899999999999999999999998876554 67788998888766653 223332
Q ss_pred cccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhH
Q 008638 283 IKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRF 340 (558)
Q Consensus 283 ~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~ 340 (558)
++ .+ ..++ +.+ ....+..+.+.++. .++--+|++|+++-+
T Consensus 1132 -dl------~~-l~~~-~pd--------~~e~~~~i~~~l~~-~~~~dlvVIDsl~~L 1171 (2050)
T 3cmu_A 1132 -DI------DN-LLCS-QPD--------TGEQALEICDALAR-SGAVDVIVVDSVAAL 1171 (2050)
T ss_dssp -CT------TT-CEEE-CCS--------SHHHHHHHHHHHHH-HTCCSEEEESCGGGC
T ss_pred -Ch------hH-heee-cCc--------chHHHHHHHHHHHH-hCCCCEEEECCcccc
Confidence 11 11 1222 222 12455677777776 577788999999854
No 48
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.36 E-value=0.0084 Score=64.26 Aligned_cols=58 Identities=17% Similarity=0.168 Sum_probs=47.2
Q ss_pred ceeeeeeeEeecccc-cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCc
Q 008638 208 QILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267 (558)
Q Consensus 208 e~l~TGIkvID~l~P-igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~ 267 (558)
..+.||++.+|-++- +.+|+-+.|.|++|+|||+|+.+++.+.+.. +..|.....|-+
T Consensus 178 ~gi~TG~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms 236 (444)
T 3bgw_A 178 TGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMG 236 (444)
T ss_dssp CSBCCSCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSC
T ss_pred CCcCCCcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCC
Confidence 458899999998874 7799999999999999999999999998765 445555555543
No 49
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.34 E-value=0.017 Score=58.26 Aligned_cols=98 Identities=19% Similarity=0.270 Sum_probs=54.7
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHHHhhc--CCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecC
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAH--GGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQM 301 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~--~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~ 301 (558)
.+++-++|.|++|+|||+|+..+........ +...+++-+.+.. ...+++..+.+. ++.. ....
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~i~~~----l~~~---------~~~~ 108 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID-TPYRVLADLLES----LDVK---------VPFT 108 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC-SHHHHHHHHTTT----TSCC---------CCSS
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC-CHHHHHHHHHHH----hCCC---------CCCC
Confidence 5678899999999999999988776554332 2234555554322 233445544321 1110 0001
Q ss_pred CCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHHH
Q 008638 302 NEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342 (558)
Q Consensus 302 ~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a~ 342 (558)
..+..... -.+-+++.. .++.++|++|++..+..
T Consensus 109 ~~~~~~~~------~~l~~~l~~-~~~~~vlilDE~~~l~~ 142 (386)
T 2qby_A 109 GLSIAELY------RRLVKAVRD-YGSQVVIVLDEIDAFVK 142 (386)
T ss_dssp SCCHHHHH------HHHHHHHHT-CCSCEEEEEETHHHHHH
T ss_pred CCCHHHHH------HHHHHHHhc-cCCeEEEEEcChhhhhc
Confidence 11111111 123344554 67799999999987653
No 50
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.25 E-value=0.012 Score=54.03 Aligned_cols=30 Identities=27% Similarity=0.463 Sum_probs=25.3
Q ss_pred ccccCceeeeecCCCCChhHHHHHHHHHHH
Q 008638 222 PYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 222 PigkGqr~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
.+.+|+.++|+|++|+|||+|+..+++...
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356799999999999999999987776654
No 51
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.15 E-value=0.061 Score=55.03 Aligned_cols=96 Identities=14% Similarity=0.146 Sum_probs=54.4
Q ss_pred cCceeee--ecCCCCChhHHHHHHHHHHHhh----cCCE-EEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEE
Q 008638 225 RGGKIGL--FGGAGVGKTVLIMELINNVAKA----HGGF-SVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALV 297 (558)
Q Consensus 225 kGqr~gI--fGg~g~GKT~L~~~~i~n~a~~----~~~v-~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV 297 (558)
.++.+.| .|++|+|||+|+..+.+..... +.++ .+|+-|.+. ....++++.+.+. ++...
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~----l~~~~-------- 115 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA-PNLYTILSLIVRQ----TGYPI-------- 115 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC-CSHHHHHHHHHHH----HTCCC--------
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC-CCHHHHHHHHHHH----hCCCC--------
Confidence 4566777 8999999999999887665332 1133 455655432 3345666665442 11100
Q ss_pred EecCCCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhHH
Q 008638 298 YGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (558)
Q Consensus 298 ~~t~~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~a 341 (558)
.....+... ..-.+.+++.. .++.++|++|++-.+.
T Consensus 116 -~~~~~~~~~------~~~~l~~~l~~-~~~~~llvlDe~~~l~ 151 (412)
T 1w5s_A 116 -QVRGAPALD------ILKALVDNLYV-ENHYLLVILDEFQSML 151 (412)
T ss_dssp -CCTTCCHHH------HHHHHHHHHHH-HTCEEEEEEESTHHHH
T ss_pred -CCCCCCHHH------HHHHHHHHHHh-cCCeEEEEEeCHHHHh
Confidence 001112111 11223445554 5889999999998765
No 52
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.14 E-value=0.012 Score=60.99 Aligned_cols=60 Identities=20% Similarity=0.212 Sum_probs=48.6
Q ss_pred ceeeeeeeEeeccc-ccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchh
Q 008638 208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTRE 269 (558)
Q Consensus 208 e~l~TGIkvID~l~-PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rE 269 (558)
.-+.||+..+|-++ -+.+|+=+.|.|++|+|||+|+..++.+.+.. +..|.....|-+.+
T Consensus 27 ~gi~TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSlEms~~ 87 (338)
T 4a1f_A 27 TGIPTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSLEMSAE 87 (338)
T ss_dssp CSBCCSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEESSSCHH
T ss_pred CcccCCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCCCHH
Confidence 45899999999877 48899999999999999999999999988763 45555556665443
No 53
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.11 E-value=0.0095 Score=54.79 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=22.8
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
|.++.+|..++|+|++|+|||||+..+.
T Consensus 3 m~~i~~g~~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 3 MTDDLGGNILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp ---CCTTEEEEEEECTTSCHHHHHHHHH
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 5578899999999999999999997554
No 54
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.79 E-value=0.075 Score=53.82 Aligned_cols=96 Identities=20% Similarity=0.227 Sum_probs=52.2
Q ss_pred ccCc--eeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecC
Q 008638 224 QRGG--KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQM 301 (558)
Q Consensus 224 gkGq--r~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~ 301 (558)
..|. .++|.|++|+|||+|+..+........+...+++-|.. .....+++..+.+. ++.. ....
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~l~~~----l~~~---------~~~~ 105 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI-YRNFTAIIGEIARS----LNIP---------FPRR 105 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT-CCSHHHHHHHHHHH----TTCC---------CCSS
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc-CCCHHHHHHHHHHH----hCcc---------CCCC
Confidence 3445 79999999999999998776654221112344554443 33344566665432 1110 0001
Q ss_pred CCCHHHHHHHHHHHHHHHHHhHHhCCCcEEeecccchhH
Q 008638 302 NEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRF 340 (558)
Q Consensus 302 ~ep~~~r~~~~~ta~tiAEyfRd~~G~dVLl~~DsltR~ 340 (558)
..+...-. -.+.+++.. .++.++|++|++..+
T Consensus 106 ~~~~~~~~------~~l~~~l~~-~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 106 GLSRDEFL------ALLVEHLRE-RDLYMFLVLDDAFNL 137 (389)
T ss_dssp CCCHHHHH------HHHHHHHHH-TTCCEEEEEETGGGS
T ss_pred CCCHHHHH------HHHHHHHhh-cCCeEEEEEECcccc
Confidence 11211111 123344444 688899999999866
No 55
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.74 E-value=0.054 Score=57.64 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=25.6
Q ss_pred CceeeeecCCCCChhHHHHHHHHHHHhhcCCEEE
Q 008638 226 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSV 259 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V 259 (558)
+.-++|.|++|+|||+|+..+.+.....+++..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v 163 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRV 163 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeE
Confidence 5679999999999999998776655444444443
No 56
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.70 E-value=0.012 Score=63.60 Aligned_cols=60 Identities=17% Similarity=0.091 Sum_probs=46.4
Q ss_pred cceeee-eeeEeecccc-cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCC
Q 008638 207 QQILVT-GIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266 (558)
Q Consensus 207 ~e~l~T-GIkvID~l~P-igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER 266 (558)
...+.| |++.+|-++- +.+|.=+.|.|++|+|||+|+.+++.+.+..++.-++|+-.-+.
T Consensus 221 ~~~i~t~G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s 282 (503)
T 1q57_A 221 SVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES 282 (503)
T ss_dssp TTCSCCSSCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC
T ss_pred cCCccccchhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC
Confidence 346789 9999998864 67899999999999999999999999887654333445444333
No 57
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.65 E-value=0.02 Score=62.21 Aligned_cols=57 Identities=23% Similarity=0.272 Sum_probs=41.7
Q ss_pred ceeeeeeeEeecc-c-ccccCceeeeecCCCCChhHHHHHHH-HHHHhhcCCEEEEEEecCC
Q 008638 208 QILVTGIKVVDLL-A-PYQRGGKIGLFGGAGVGKTVLIMELI-NNVAKAHGGFSVFAGVGER 266 (558)
Q Consensus 208 e~l~TGIkvID~l-~-PigkGqr~gIfGg~g~GKT~L~~~~i-~n~a~~~~~v~V~~~iGER 266 (558)
+.+.||+.++|-+ + -+.+|+.++|.|++|+|||||+..++ ....+...+ +||+. |+.
T Consensus 19 ~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g-~i~v~-g~~ 78 (525)
T 1tf7_A 19 AKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEP-GVFVT-FEE 78 (525)
T ss_dssp CEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCC-EEEEE-SSS
T ss_pred ccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCC-EEEEE-EeC
Confidence 5578999999865 4 68899999999999999999998763 444332223 55543 544
No 58
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.52 E-value=0.091 Score=52.70 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=22.5
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
.+.-+.|.|++|+|||+|+..+.+...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 567899999999999999987766543
No 59
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.52 E-value=0.18 Score=55.10 Aligned_cols=31 Identities=29% Similarity=0.222 Sum_probs=26.5
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
+.+.+|+.++|+|++|+|||||+.-|.....
T Consensus 288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 288 VEGKAPFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp CCSCTTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeccCCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 4688999999999999999999987765543
No 60
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.51 E-value=0.018 Score=54.33 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=20.9
Q ss_pred ccccCceeeeecCCCCChhHHHHHHH
Q 008638 222 PYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 222 PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
++.+|+.++|+|++|+|||||+..+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~ 41 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLR 41 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999999996544
No 61
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.45 E-value=0.018 Score=55.17 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=21.6
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
+.+.+|+.++|+|++|+|||||+..+..
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred eecCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4577999999999999999999975544
No 62
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.44 E-value=0.024 Score=58.74 Aligned_cols=42 Identities=26% Similarity=0.199 Sum_probs=35.6
Q ss_pred ceeeeeeeEeeccc-ccccCceeeeecCCCCChhHHHHHHHHH
Q 008638 208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 208 e~l~TGIkvID~l~-PigkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
..+.||+..+|-++ -+-+|.-+.|.|++|+|||+|+..++.+
T Consensus 104 ~~i~TGi~~LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 104 GELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TTCCSBCCEEEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred hccccCcHHHHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 44679999999887 4447888899999999999999988765
No 63
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.29 E-value=0.022 Score=52.76 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=21.7
Q ss_pred cccCceeeeecCCCCChhHHHHHHHH
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
+.+|+.++|+|++|+|||||+..+..
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHh
Confidence 45799999999999999999975543
No 64
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.17 E-value=0.028 Score=52.63 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=21.7
Q ss_pred eeeeeeEeecccccccCceeeeecCCCCChhHHHHHHHH
Q 008638 210 LVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 210 l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
|.|+--..+.+.+..+|..++|.|++|+|||||+..+..
T Consensus 13 ~~~~~~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 13 LGTENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp ---------------CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cCchhhHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 445555666777778999999999999999999976654
No 65
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.03 E-value=0.12 Score=53.05 Aligned_cols=96 Identities=10% Similarity=0.048 Sum_probs=55.2
Q ss_pred cccCceeeeecCCCCChhHHHHHHHHHHHhhc-----CCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEE
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAH-----GGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALV 297 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~-----~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV 297 (558)
-++|..+.|.|++|||||+++..++....... +.+.++-.-|..-..-.+++.++.+. + .+. +.
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~--L-~g~-----~~--- 110 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFA--I-SKE-----NL--- 110 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHH--H-SCC-----C----
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHH--h-cCC-----CC---
Confidence 46888999999999999999998887664321 13443333333333333445444432 0 011 10
Q ss_pred EecCCCCHHHHHHHHHHHHHHHHHhHH---hCCCcEEeecccchhHH
Q 008638 298 YGQMNEPPGARARVGLTGLTVAEHFRD---AEGQDVLLFIDNIFRFT 341 (558)
Q Consensus 298 ~~t~~ep~~~r~~~~~ta~tiAEyfRd---~~G~dVLl~~DsltR~a 341 (558)
+..++ .-.+-++|.. .+++.+++++|.+-++.
T Consensus 111 --~~~~~----------~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 111 --CGDIS----------LEALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp ---CCCC----------HHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred --CchHH----------HHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 01111 1234566653 25778999999999886
No 66
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.94 E-value=0.055 Score=58.76 Aligned_cols=42 Identities=29% Similarity=0.436 Sum_probs=30.2
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHH---HhhcCCEEEEEEecCC
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNV---AKAHGGFSVFAGVGER 266 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~---a~~~~~v~V~~~iGER 266 (558)
.+.-++|.|++|+|||+|+.++.+.. ....++.+.++-+++.
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 45678999999999999999887543 2333445666666664
No 67
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=93.91 E-value=0.079 Score=57.68 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=37.5
Q ss_pred ceeeeecCCCCChhHHHHHHHH---HHHhhcCCEEEEEEecCCc-hhHHHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELIN---NVAKAHGGFSVFAGVGERT-REGNDLYREMIE 279 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~---n~a~~~~~v~V~~~iGER~-rEv~d~~~e~~e 279 (558)
.-++|.|..|+|||+|+..+.+ ...+.+-+..+|+-+.+.. ....++++++.+
T Consensus 153 ~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHH
Confidence 5689999999999999998875 2223334677888777654 245566666654
No 68
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.71 E-value=0.026 Score=51.81 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=22.7
Q ss_pred cccccCceeeeecCCCCChhHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIME 245 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~ 245 (558)
+.+.+|+.++|+|++|+|||||+..
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHH
Confidence 4678999999999999999999973
No 69
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.63 E-value=0.034 Score=52.49 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.1
Q ss_pred cccCceeeeecCCCCChhHHHHHHHHH
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
..+|+.++|+|++|+|||||+..+...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999765543
No 70
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.58 E-value=0.042 Score=59.69 Aligned_cols=59 Identities=19% Similarity=0.320 Sum_probs=43.4
Q ss_pred cceeeeeeeEeeccc--ccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCc
Q 008638 207 QQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267 (558)
Q Consensus 207 ~e~l~TGIkvID~l~--PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~ 267 (558)
.+.+.||+.-+|-++ -+.+|..++|.|++|+|||||+..++..... .+.-++|+ ++|..
T Consensus 260 ~~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~-~G~~vi~~-~~ee~ 320 (525)
T 1tf7_A 260 NVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA-NKERAILF-AYEES 320 (525)
T ss_dssp CCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT-TTCCEEEE-ESSSC
T ss_pred cceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh-CCCCEEEE-EEeCC
Confidence 355788988788654 7899999999999999999999888766543 33334443 44443
No 71
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.54 E-value=0.036 Score=51.00 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=24.7
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
+.+.+|+.++|+|+.|+|||||+.-+...
T Consensus 28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999999766543
No 72
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.53 E-value=0.032 Score=57.10 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=27.0
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
|+-+.+.+|++++|+|++|+|||||+.-++.-
T Consensus 118 ~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HHHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 34578899999999999999999999755543
No 73
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.51 E-value=0.42 Score=48.62 Aligned_cols=42 Identities=24% Similarity=0.166 Sum_probs=30.4
Q ss_pred cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecC
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGE 265 (558)
..+|..++|+|++|+||||++..++...+.. +.-+.++.+.-
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv~~D~ 142 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLAAADT 142 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECT
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEEcccc
Confidence 5678899999999999999999888766543 33233444443
No 74
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.50 E-value=0.33 Score=49.87 Aligned_cols=41 Identities=32% Similarity=0.289 Sum_probs=29.5
Q ss_pred cccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEec
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG 264 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iG 264 (558)
-.+|..++|+|++|+||||++.-+...... .++-+.+.+..
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~-~~g~V~l~g~D 166 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKN-HGFSVVIAASD 166 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh-cCCEEEEEeec
Confidence 468999999999999999999877765543 33333344444
No 75
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.47 E-value=0.043 Score=50.61 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=21.7
Q ss_pred cCceeeeecCCCCChhHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
+|..++|+|++|+|||||+..+...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 6889999999999999999876543
No 76
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.46 E-value=0.038 Score=53.94 Aligned_cols=30 Identities=20% Similarity=0.447 Sum_probs=25.1
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
.=+.+.+|+.++|+|++|+|||||+. ++..
T Consensus 24 isl~i~~Ge~~~iiG~nGsGKSTLl~-~l~G 53 (235)
T 3tif_A 24 VNLNIKEGEFVSIMGPSGSGKSTMLN-IIGC 53 (235)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHH-HHTT
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHH-HHhc
Confidence 34678999999999999999999996 4433
No 77
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.41 E-value=0.03 Score=51.84 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=27.1
Q ss_pred eEeecccccccCceeeeecCCCCChhHHHHHHH
Q 008638 215 KVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 215 kvID~l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
.+++- +|+.+|.+++|+|++|+|||||+..+.
T Consensus 16 ~~l~~-~~~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 16 PDIRH-LPSDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SSGGG-SSCSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCHhH-CCCCCCcEEEEECCCCCCHHHHHHHHh
Confidence 45555 899999999999999999999996543
No 78
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.39 E-value=0.038 Score=52.03 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=20.1
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
-+|..++|+|++|+|||||+..+...
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999766543
No 79
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.32 E-value=0.077 Score=54.56 Aligned_cols=41 Identities=29% Similarity=0.359 Sum_probs=30.1
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEE
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVF 260 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~ 260 (558)
-+.+.+|+.++|+|++|+|||||+..++.......+.+.|.
T Consensus 49 ~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~ 89 (337)
T 2qm8_A 49 LPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVL 89 (337)
T ss_dssp GGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEE
Confidence 35689999999999999999999977665443223344443
No 80
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.28 E-value=0.042 Score=53.68 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=23.2
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+.+|+.++|+|++|+|||||+.-+
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l 51 (237)
T 2cbz_A 26 FSIPEGALVAVVGQVGCGKSSLLSAL 51 (237)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHH
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHH
Confidence 56889999999999999999999643
No 81
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.27 E-value=0.047 Score=50.52 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=21.5
Q ss_pred cccCceeeeecCCCCChhHHHHHHH
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+|..++|.|++|+|||||+..+.
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~ 27 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIF 27 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999999997554
No 82
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.17 E-value=0.04 Score=53.31 Aligned_cols=30 Identities=20% Similarity=0.529 Sum_probs=24.9
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
.=+.+.+|+.++|+|++|+|||||+. ++..
T Consensus 23 vsl~i~~Ge~~~iiG~nGsGKSTLl~-~l~G 52 (224)
T 2pcj_A 23 ISLSVKKGEFVSIIGASGSGKSTLLY-ILGL 52 (224)
T ss_dssp EEEEEETTCEEEEEECTTSCHHHHHH-HHTT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHH-HHhc
Confidence 34678899999999999999999995 4443
No 83
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.15 E-value=0.034 Score=53.13 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=19.1
Q ss_pred eeeEeecccccccCceeeeecCCCCChhHHHHHHH
Q 008638 213 GIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 213 GIkvID~l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+-+++ .+.+|..++|.|++|+|||||+..+.
T Consensus 16 ~~~~~sl--~v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 16 TQGPGSM--LKSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp ------C--CEECCCEEEEECSCC----CHHHHHH
T ss_pred ccCCCCc--ccCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3344443 46689999999999999999997654
No 84
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.15 E-value=0.054 Score=50.60 Aligned_cols=28 Identities=29% Similarity=0.190 Sum_probs=22.4
Q ss_pred ccccCceeeeecCCCCChhHHHHHHHHH
Q 008638 222 PYQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 222 PigkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
.+.+|..+.|.|++|+||||++..+...
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4668899999999999999999877644
No 85
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.14 E-value=0.044 Score=53.94 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=23.5
Q ss_pred ccccccCceeeeecCCCCChhHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
=+.+.+|+.++|+|++|+|||||+.-+
T Consensus 29 sl~i~~Ge~~~i~G~nGsGKSTLl~~l 55 (247)
T 2ff7_A 29 NLSIKQGEVIGIVGRSGSGKSTLTKLI 55 (247)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHH
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 356889999999999999999999633
No 86
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.05 E-value=0.18 Score=51.09 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=21.3
Q ss_pred CceeeeecCCCCChhHHHHHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
|.-++|.|++|+|||+|+..+.+..
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999998776654
No 87
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.99 E-value=0.051 Score=54.09 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.7
Q ss_pred ccccccCceeeeecCCCCChhHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
=+.+.+|+.++|+|++|+|||||+.-+
T Consensus 40 sl~i~~Ge~~~l~G~NGsGKSTLlk~l 66 (267)
T 2zu0_C 40 SLDVHPGEVHAIMGPNGSGKSTLSATL 66 (267)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHH
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 357889999999999999999999643
No 88
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.98 E-value=0.062 Score=53.32 Aligned_cols=33 Identities=30% Similarity=0.392 Sum_probs=26.7
Q ss_pred eecccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 217 ID~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
++-+. +.+|+.++|+|++|+|||||+.-++...
T Consensus 17 l~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 17 VLELC-HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp HHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred HHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 34444 7899999999999999999997666543
No 89
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.96 E-value=0.048 Score=52.83 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=21.7
Q ss_pred cccccCceeeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|..+||.|+.|+|||||+..+.
T Consensus 20 l~i~~g~iigI~G~~GsGKSTl~k~L~ 46 (245)
T 2jeo_A 20 FQSMRPFLIGVSGGTASGKSTVCEKIM 46 (245)
T ss_dssp ---CCSEEEEEECSTTSSHHHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 567899999999999999999997554
No 90
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.96 E-value=0.051 Score=53.44 Aligned_cols=28 Identities=29% Similarity=0.326 Sum_probs=24.2
Q ss_pred cccccccCceeeeecCCCCChhHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
.=+.+.+|+.++|+|++|+|||||+.-+
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLlk~l 49 (250)
T 2d2e_A 22 VNLVVPKGEVHALMGPNGAGKSTLGKIL 49 (250)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 3367889999999999999999999643
No 91
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.95 E-value=0.049 Score=54.05 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=24.0
Q ss_pred cccccccCceeeeecCCCCChhHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
.=+.+.+|+.++|+|++|+|||||+.-+
T Consensus 25 vsl~i~~Ge~~~liG~nGsGKSTLlk~l 52 (262)
T 1b0u_A 25 VSLQARAGDVISIIGSSGSGKSTFLRCI 52 (262)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 3457889999999999999999999633
No 92
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.91 E-value=0.049 Score=54.71 Aligned_cols=27 Identities=33% Similarity=0.628 Sum_probs=23.7
Q ss_pred ccccccCceeeeecCCCCChhHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
=+.+.+|+.++|+|++|+|||||+.-+
T Consensus 28 sl~i~~Ge~~~iiGpnGsGKSTLl~~l 54 (275)
T 3gfo_A 28 NMNIKRGEVTAILGGNGVGKSTLFQNF 54 (275)
T ss_dssp EEEEETTSEEEEECCTTSSHHHHHHHH
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 367889999999999999999999633
No 93
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.89 E-value=0.049 Score=54.30 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=23.8
Q ss_pred ccccccCceeeeecCCCCChhHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
=+.+.+|+.++|+|++|+|||||+.-+
T Consensus 31 sl~i~~Ge~~~liG~nGsGKSTLl~~l 57 (266)
T 4g1u_C 31 SLHIASGEMVAIIGPNGAGKSTLLRLL 57 (266)
T ss_dssp EEEEETTCEEEEECCTTSCHHHHHHHH
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHH
Confidence 367889999999999999999999633
No 94
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.83 E-value=0.052 Score=53.60 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=24.1
Q ss_pred cccccccCceeeeecCCCCChhHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
.=+.+.+|+.++|+|++|+|||||+.-+
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLlk~l 53 (257)
T 1g6h_A 26 VSISVNKGDVTLIIGPNGSGKSTLINVI 53 (257)
T ss_dssp ECCEEETTCEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHH
Confidence 3467889999999999999999999633
No 95
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.77 E-value=0.11 Score=55.71 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=18.3
Q ss_pred ceeeeecCCCCChhHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~ 248 (558)
.-++|.|++|||||+|+.-+.+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999999975543
No 96
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.77 E-value=0.054 Score=52.59 Aligned_cols=26 Identities=35% Similarity=0.598 Sum_probs=23.0
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+.+|+.++|+|+.|+|||||+.-+
T Consensus 29 l~i~~Ge~~~i~G~nGsGKSTLl~~l 54 (229)
T 2pze_A 29 FKIERGQLLAVAGSTGAGKTSLLMMI 54 (229)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 56789999999999999999999643
No 97
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.75 E-value=0.053 Score=52.42 Aligned_cols=25 Identities=28% Similarity=0.611 Sum_probs=22.5
Q ss_pred cccccCceeeeecCCCCChhHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIME 245 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~ 245 (558)
+.+.+|+.++|+|++|+|||||+.-
T Consensus 30 l~i~~Ge~~~iiG~NGsGKSTLlk~ 54 (214)
T 1sgw_A 30 MTIEKGNVVNFHGPNGIGKTTLLKT 54 (214)
T ss_dssp EEEETTCCEEEECCTTSSHHHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHH
Confidence 5678999999999999999999963
No 98
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.72 E-value=0.79 Score=46.25 Aligned_cols=39 Identities=26% Similarity=0.092 Sum_probs=28.6
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEec
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG 264 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iG 264 (558)
+|..+++.|..|+||||++..++...+.....+ .++...
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v-~l~~~D 135 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKV-GLVGAD 135 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCE-EEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE-EEEecC
Confidence 488999999999999999998887765532233 334444
No 99
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.72 E-value=0.055 Score=52.89 Aligned_cols=25 Identities=32% Similarity=0.508 Sum_probs=22.7
Q ss_pred cccccCceeeeecCCCCChhHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIME 245 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~ 245 (558)
+.+.+|+.++|+|++|+|||||+.-
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTLl~~ 51 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTTLSA 51 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHH
Confidence 5688999999999999999999953
No 100
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.70 E-value=0.056 Score=53.55 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=23.1
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+.+|+.++|+|++|+|||||+.-+
T Consensus 41 l~i~~Ge~~~i~G~nGsGKSTLl~~l 66 (260)
T 2ghi_A 41 FFIPSGTTCALVGHTGSGKSTIAKLL 66 (260)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHH
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHH
Confidence 56789999999999999999999644
No 101
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.69 E-value=0.056 Score=53.87 Aligned_cols=30 Identities=20% Similarity=0.389 Sum_probs=24.9
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
.=+.+.+|+.++|+|++|+|||||+. ++..
T Consensus 43 vsl~i~~Gei~~liG~NGsGKSTLlk-~l~G 72 (263)
T 2olj_A 43 INVHIREGEVVVVIGPSGSGKSTFLR-CLNL 72 (263)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHH-HHTT
T ss_pred eEEEEcCCCEEEEEcCCCCcHHHHHH-HHHc
Confidence 34578899999999999999999996 4433
No 102
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.69 E-value=0.054 Score=53.00 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=23.1
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+.+|+.++|+|++|+|||||+.-+
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l 48 (243)
T 1mv5_A 23 FEAQPNSIIAFAGPSGGGKSTIFSLL 48 (243)
T ss_dssp EEECTTEEEEEECCTTSSHHHHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 56889999999999999999999643
No 103
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.68 E-value=0.057 Score=53.58 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=23.6
Q ss_pred ccccccCceeeeecCCCCChhHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
=+.+.+|+.++|+|+.|+|||||+.-+
T Consensus 35 sl~i~~Gei~~l~G~NGsGKSTLlk~l 61 (256)
T 1vpl_A 35 SFEIEEGEIFGLIGPNGAGKTTTLRII 61 (256)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHH
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHH
Confidence 357889999999999999999999633
No 104
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.63 E-value=0.11 Score=52.73 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=25.8
Q ss_pred ccccCceeeeecCCCCChhHHHHHHHHHHH
Q 008638 222 PYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 222 PigkGqr~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
.+.+|+.++|+|+.|+|||||+.-+.....
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987766543
No 105
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.63 E-value=0.05 Score=54.65 Aligned_cols=30 Identities=33% Similarity=0.512 Sum_probs=24.9
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
.=+.+.+|+.++|+|++|+|||||+. ++..
T Consensus 40 isl~i~~Ge~~~liG~NGsGKSTLlk-~l~G 69 (279)
T 2ihy_A 40 ISWQIAKGDKWILYGLNGAGKTTLLN-ILNA 69 (279)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHH-HHTT
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHH-HHhC
Confidence 34578899999999999999999996 4433
No 106
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.62 E-value=0.053 Score=50.69 Aligned_cols=26 Identities=35% Similarity=0.439 Sum_probs=21.0
Q ss_pred cccCceeeeecCCCCChhHHHHHHHH
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
..+|..++|.|++|+|||||+..+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999975543
No 107
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.60 E-value=0.11 Score=48.62 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=23.5
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.+|..+.|.|++|+|||||+..+....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999998776654
No 108
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.60 E-value=0.059 Score=53.79 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=23.5
Q ss_pred ccccccCceeeeecCCCCChhHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
=+.+.+|+.++|+|++|+|||||+.-+
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLlk~l 65 (271)
T 2ixe_A 39 TFTLYPGKVTALVGPNGSGKSTVAALL 65 (271)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 356889999999999999999999633
No 109
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.58 E-value=0.059 Score=50.99 Aligned_cols=26 Identities=35% Similarity=0.416 Sum_probs=22.0
Q ss_pred CceeeeecCCCCChhHHHHHHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
|++++|+|++|+|||||+..++....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 78999999999999999976665543
No 110
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.51 E-value=0.06 Score=53.18 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=23.6
Q ss_pred ccccccCceeeeecCCCCChhHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
=+.+.+|+.++|+|++|+|||||+.-+
T Consensus 20 sl~i~~Ge~~~liG~NGsGKSTLlk~l 46 (249)
T 2qi9_C 20 SGEVRAGEILHLVGPNGAGKSTLLARM 46 (249)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHH
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHH
Confidence 356889999999999999999999633
No 111
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.43 E-value=0.86 Score=46.51 Aligned_cols=43 Identities=26% Similarity=0.238 Sum_probs=31.7
Q ss_pred ccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecC
Q 008638 222 PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265 (558)
Q Consensus 222 PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGE 265 (558)
...+|+.++|.|+.|+||||++..++...+.. +.-+.++.+.-
T Consensus 101 ~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVllid~D~ 143 (320)
T 1zu4_A 101 KENRLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIAAADT 143 (320)
T ss_dssp CTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 46789999999999999999999888766543 33333444443
No 112
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.40 E-value=0.065 Score=50.12 Aligned_cols=28 Identities=29% Similarity=0.272 Sum_probs=23.6
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
...+.+|..++|.|++|+|||||+..+.
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~ 42 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQ 42 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHH
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4457788999999999999999997553
No 113
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.39 E-value=0.078 Score=50.86 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=23.1
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
.|.-+|..+.|.|++|+|||||+..++.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHh
Confidence 3556899999999999999999987764
No 114
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.37 E-value=0.066 Score=53.19 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=24.6
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
=+.+.+|+.++|+|++|+|||||+. ++..
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLl~-~i~G 55 (266)
T 2yz2_A 27 SLVINEGECLLVAGNTGSGKSTLLQ-IVAG 55 (266)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHH-HHTT
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHH-HHhC
Confidence 3678899999999999999999996 4433
No 115
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.33 E-value=0.064 Score=53.00 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=23.1
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+.+|+.++|+|++|+|||||+.-+
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l 51 (253)
T 2nq2_C 26 FDLNKGDILAVLGQNGCGKSTLLDLL 51 (253)
T ss_dssp EEEETTCEEEEECCSSSSHHHHHHHH
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHH
Confidence 56889999999999999999999633
No 116
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.31 E-value=0.14 Score=47.78 Aligned_cols=35 Identities=23% Similarity=0.170 Sum_probs=26.9
Q ss_pred eecccccccCceeeeecCCCCChhHHHHHHHHHHH
Q 008638 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 217 ID~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
+.-+.-..+++.++|.|++|+|||+|+..+.+...
T Consensus 43 l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 43 LKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp HHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 33344344788999999999999999987776554
No 117
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.31 E-value=0.064 Score=56.10 Aligned_cols=34 Identities=26% Similarity=0.471 Sum_probs=27.3
Q ss_pred eEe-ecccccccCceeeeecCCCCChhHHHHHHHHH
Q 008638 215 KVV-DLLAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 215 kvI-D~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
.++ |.=+.+.+|+.++|+|++|+|||||+. +|..
T Consensus 18 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr-~iaG 52 (359)
T 3fvq_A 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLR-CLAG 52 (359)
T ss_dssp EEEEEEEEEECTTCEEEEEESTTSSHHHHHH-HHHT
T ss_pred EEEEeeEEEEcCCCEEEEECCCCchHHHHHH-HHhc
Confidence 344 455688999999999999999999996 4444
No 118
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.28 E-value=0.13 Score=48.11 Aligned_cols=29 Identities=24% Similarity=0.213 Sum_probs=24.0
Q ss_pred ccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 222 PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 222 PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+..+|..++|.|++|+|||||+..+....
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45788999999999999999997665443
No 119
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.28 E-value=0.054 Score=52.03 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=22.0
Q ss_pred cccCceeeeecCCCCChhHHHHHHH
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+.+|+.++|+|++|+|||||+.-+.
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKA 43 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHh
Confidence 4789999999999999999996444
No 120
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.20 E-value=0.11 Score=52.58 Aligned_cols=27 Identities=22% Similarity=0.143 Sum_probs=22.7
Q ss_pred ccccCceeeeecCCCCChhHHHHHHHH
Q 008638 222 PYQRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 222 PigkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
+..+|..+||.|++|+|||||+..+..
T Consensus 76 ~~~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 76 GQRIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999999965543
No 121
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.20 E-value=1.2 Score=44.79 Aligned_cols=41 Identities=17% Similarity=0.093 Sum_probs=29.7
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCC
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER 266 (558)
+|+.++|+|..|+||||++..+....+...+. +.++...-+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~-v~l~~~d~~ 137 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRR-PLLVAADTQ 137 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCC-EEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCe-EEEecCCcc
Confidence 88999999999999999999888766543223 333444433
No 122
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.07 E-value=0.095 Score=48.36 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=22.7
Q ss_pred ccccCceeeeecCCCCChhHHHHHHHH
Q 008638 222 PYQRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 222 PigkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
+..+|..++|.|++|+||||++..+..
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999976643
No 123
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.00 E-value=0.078 Score=55.92 Aligned_cols=31 Identities=26% Similarity=0.473 Sum_probs=25.7
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
|.=+.+.+|+.++|+|++|+|||||+. +|..
T Consensus 21 ~vsl~i~~Ge~~~llGpsGsGKSTLLr-~iaG 51 (381)
T 3rlf_A 21 DINLDIHEGEFVVFVGPSGCGKSTLLR-MIAG 51 (381)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHH-HHHT
T ss_pred eeEEEECCCCEEEEEcCCCchHHHHHH-HHHc
Confidence 344678999999999999999999996 4444
No 124
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.98 E-value=0.24 Score=48.73 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=21.3
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+...++|.|++|+|||+++..+.+..
T Consensus 45 ~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 45 SMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 43459999999999999998777654
No 125
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.96 E-value=0.15 Score=51.91 Aligned_cols=28 Identities=32% Similarity=0.389 Sum_probs=23.7
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
++|+.++|+|++|+|||||+.-+.....
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 5789999999999999999987665543
No 126
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.93 E-value=0.8 Score=49.14 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=24.7
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHHHhh
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~a~~ 253 (558)
++..+++.|.+|+||||++..++...++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 56689999999999999999998876553
No 127
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.93 E-value=0.079 Score=55.29 Aligned_cols=32 Identities=31% Similarity=0.588 Sum_probs=25.8
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
|.=+.+.+|+.++|+|++|+|||||+. +|...
T Consensus 33 ~vsl~i~~Ge~~~llGpnGsGKSTLLr-~iaGl 64 (355)
T 1z47_A 33 GVSFQIREGEMVGLLGPSGSGKTTILR-LIAGL 64 (355)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHH-HHHTS
T ss_pred eeEEEECCCCEEEEECCCCCcHHHHHH-HHhCC
Confidence 344578899999999999999999996 44443
No 128
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.92 E-value=0.081 Score=55.24 Aligned_cols=32 Identities=22% Similarity=0.494 Sum_probs=26.2
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
|.=+.+.+|+.++|+|++|+|||||+. +|...
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr-~iaGl 52 (359)
T 2yyz_A 21 GVSFEVKDGEFVALLGPSGCGKTTTLL-MLAGI 52 (359)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHH-HHHTS
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHH-HHHCC
Confidence 445678899999999999999999996 44443
No 129
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.87 E-value=0.082 Score=55.27 Aligned_cols=31 Identities=26% Similarity=0.480 Sum_probs=25.5
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
|.=+.+.+|+.++|+|++|+|||||+. +|..
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr-~iaG 51 (362)
T 2it1_A 21 NINLKIKDGEFMALLGPSGSGKSTLLY-TIAG 51 (362)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHH-HHHT
T ss_pred eeEEEECCCCEEEEECCCCchHHHHHH-HHhc
Confidence 344678899999999999999999996 4444
No 130
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.78 E-value=0.085 Score=55.36 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=26.1
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
|.=+.+.+|+.++|+|++|+|||||+. +|...
T Consensus 29 ~vsl~i~~Ge~~~llGpnGsGKSTLLr-~iaGl 60 (372)
T 1v43_A 29 KLNLTIKDGEFLVLLGPSGCGKTTTLR-MIAGL 60 (372)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHH-HHHTS
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHH-HHHcC
Confidence 344678899999999999999999996 44443
No 131
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=91.77 E-value=0.49 Score=56.26 Aligned_cols=53 Identities=11% Similarity=0.080 Sum_probs=35.9
Q ss_pred CceeeeecCCCCChhHHHHHHHHH--HHhhcCCEEEEEEecCCchhHHHHHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELINN--VAKAHGGFSVFAGVGERTREGNDLYREMIE 279 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~n--~a~~~~~v~V~~~iGER~rEv~d~~~e~~e 279 (558)
..-++|.|..|+|||+|+.++.+. +....++-++++-+++... ..+++..+.+
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d-~~~IL~~Ll~ 204 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS-PETVLEMLQK 204 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSS-HHHHHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCC-HHHHHHHHHH
Confidence 457899999999999999988753 2333334466777877654 4455555543
No 132
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.71 E-value=0.086 Score=55.27 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=26.3
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
|.=+.+.+|+.++|+|++|+|||||+. +|...
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr-~iaGl 52 (372)
T 1g29_1 21 EMSLEVKDGEFMILLGPSGCGKTTTLR-MIAGL 52 (372)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHH-HHHTS
T ss_pred eeEEEEcCCCEEEEECCCCcHHHHHHH-HHHcC
Confidence 445678899999999999999999996 44443
No 133
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.70 E-value=0.085 Score=48.79 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=19.7
Q ss_pred CceeeeecCCCCChhHHHHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
|.-++|.|++|+|||||+..+...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 456899999999999999766543
No 134
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.67 E-value=0.1 Score=47.17 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=22.7
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+|+.++|+|++|+|||+|+.-+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999997666543
No 135
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.66 E-value=0.089 Score=50.84 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=21.2
Q ss_pred cccCceeeeecCCCCChhHHHHHHHH
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
+-+|..++|+|++|+|||||+..+..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999976543
No 136
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.55 E-value=0.33 Score=44.30 Aligned_cols=50 Identities=24% Similarity=0.219 Sum_probs=29.5
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIE 279 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e 279 (558)
.++|.|++|+||||++..+...... .++.|+..--..+.+..+.++++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~--~g~~v~~~~~~~~~~~g~~~~~~~~ 51 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK--RGKKVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH--CCC-EEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEeeCCCCCcHHHHHHHHHH
Confidence 3789999999999999877655422 2455543222222344445555543
No 137
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.51 E-value=0.1 Score=49.31 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=21.7
Q ss_pred ccCceeeeecCCCCChhHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
.+|.-++|.|++|+|||||+..+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHh
Confidence 4788999999999999999986654
No 138
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.51 E-value=0.17 Score=52.75 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=25.8
Q ss_pred ccccCceeeeecCCCCChhHHHHHHHHHHH
Q 008638 222 PYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 222 PigkGqr~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
.+.+|+.++|+|+.|+|||||+.-+.....
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 578999999999999999999987765543
No 139
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.47 E-value=0.11 Score=47.06 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.4
Q ss_pred ccCceeeeecCCCCChhHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
-+|..++|.|++|+|||||+..+..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999976644
No 140
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.46 E-value=0.09 Score=55.50 Aligned_cols=27 Identities=30% Similarity=0.607 Sum_probs=23.8
Q ss_pred ccccccCceeeeecCCCCChhHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
=+.+.+|+.++|+|++|+|||||+..+
T Consensus 41 sl~i~~Ge~~~llGpsGsGKSTLLr~i 67 (390)
T 3gd7_A 41 SFSISPGQRVGLLGRTGSGKSTLLSAF 67 (390)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHH
T ss_pred eEEEcCCCEEEEECCCCChHHHHHHHH
Confidence 357899999999999999999999644
No 141
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.46 E-value=0.089 Score=53.20 Aligned_cols=26 Identities=35% Similarity=0.598 Sum_probs=23.1
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+.+|+.++|+|+.|+|||||+.-+
T Consensus 59 l~i~~Ge~~~i~G~NGsGKSTLlk~l 84 (290)
T 2bbs_A 59 FKIERGQLLAVAGSTGAGKTSLLMMI 84 (290)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHH
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHH
Confidence 56889999999999999999999643
No 142
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=91.45 E-value=0.082 Score=61.64 Aligned_cols=40 Identities=28% Similarity=0.534 Sum_probs=29.3
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHH---hhcCCEEEEEEecCC
Q 008638 227 GKIGLFGGAGVGKTVLIMELINNVA---KAHGGFSVFAGVGER 266 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n~a---~~~~~v~V~~~iGER 266 (558)
..++|.|..|+|||+|+.++.++.. ..+.+.+.++-+++.
T Consensus 148 ~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 148 GWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp EEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 4588999999999999998876532 223455667777764
No 143
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.43 E-value=0.25 Score=44.99 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=21.4
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+...++|.|++|+|||+|+..+.+..
T Consensus 37 ~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 37 NIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 33459999999999999998877654
No 144
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.42 E-value=0.11 Score=46.83 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=20.1
Q ss_pred cCceeeeecCCCCChhHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
.|..++|.|++|+|||||+..+..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999975543
No 145
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.40 E-value=0.13 Score=45.79 Aligned_cols=28 Identities=29% Similarity=0.461 Sum_probs=23.3
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
+.+.-+.|.|++|+|||+|+..+++...
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 4567799999999999999988876653
No 146
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.40 E-value=0.099 Score=54.84 Aligned_cols=36 Identities=28% Similarity=0.501 Sum_probs=28.4
Q ss_pred eeEe-ecccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 214 IKVV-DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 214 IkvI-D~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+.++ |.=+.+.+|+.++|+|++|+|||||+. ++...
T Consensus 41 ~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr-~i~GL 77 (366)
T 3tui_C 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIR-CVNLL 77 (366)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHH-HHHTS
T ss_pred eEEEEeeEEEEcCCCEEEEEcCCCchHHHHHH-HHhcC
Confidence 3455 445789999999999999999999985 54443
No 147
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.36 E-value=0.04 Score=56.36 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=27.5
Q ss_pred eecccccccCceeeeecCCCCChhHHHHHHH
Q 008638 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 217 ID~l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+|-|.++-+|+.++|+|++|+|||||+..+.
T Consensus 164 ~~~L~~~~~G~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 164 LADIIPHFQDKTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp CTTTGGGGTTSEEEEEESHHHHHHHHHHHHC
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHhc
Confidence 5778899999999999999999999996553
No 148
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.34 E-value=0.32 Score=45.04 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=23.2
Q ss_pred cccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.-+|-.+.|.|++|+||||++..+....
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567789999999999999998777654
No 149
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.30 E-value=0.068 Score=54.60 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=23.7
Q ss_pred ccccccCceeeeecCCCCChhHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
=+.+.+|++++|+|++|+|||||+.-+
T Consensus 74 sl~i~~Ge~vaivG~sGsGKSTLl~ll 100 (306)
T 3nh6_A 74 SFTVMPGQTLALVGPSGAGKSTILRLL 100 (306)
T ss_dssp EEEECTTCEEEEESSSCHHHHHHHHHH
T ss_pred eEEEcCCCEEEEECCCCchHHHHHHHH
Confidence 367899999999999999999999533
No 150
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.18 E-value=0.12 Score=48.32 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=23.2
Q ss_pred cccCceeeeecCCCCChhHHHHHHHHH
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
+.+|.-+.|.|++|+|||||+..+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 578889999999999999999876543
No 151
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.18 E-value=0.074 Score=55.32 Aligned_cols=31 Identities=29% Similarity=0.475 Sum_probs=25.5
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.=+.+.+|+.++|+|++|+|||||+. +|...
T Consensus 19 vsl~i~~Ge~~~llGpnGsGKSTLLr-~iaGl 49 (348)
T 3d31_A 19 LSLKVESGEYFVILGPTGAGKTLFLE-LIAGF 49 (348)
T ss_dssp EEEEECTTCEEEEECCCTHHHHHHHH-HHHTS
T ss_pred eEEEEcCCCEEEEECCCCccHHHHHH-HHHcC
Confidence 34578899999999999999999996 44443
No 152
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.15 E-value=0.1 Score=53.18 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=22.8
Q ss_pred ccccCceeeeecCCCCChhHHHHHHH
Q 008638 222 PYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 222 PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
.+.+|..+||.|++|+|||||+..+.
T Consensus 86 ~~~~g~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 86 DRPVPFIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp SSCCCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCchHHHHHHHHH
Confidence 37899999999999999999996544
No 153
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=91.12 E-value=0.1 Score=48.66 Aligned_cols=22 Identities=41% Similarity=0.693 Sum_probs=18.7
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
+++|+|++|+|||||+..+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999765543
No 154
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=91.07 E-value=0.1 Score=51.90 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=19.6
Q ss_pred ccccCceeeeecCCCCChhHHHHHHH
Q 008638 222 PYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 222 PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
.+.+| ++|+|++|+|||+|+.-+.
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtLakala 65 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLLAKAVA 65 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHHHHHHH
T ss_pred CCCCe--EEEECCCCCcHHHHHHHHH
Confidence 34566 9999999999999997554
No 155
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.06 E-value=0.097 Score=52.11 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=21.7
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+. |+.++|+|++|+|||||+.-+
T Consensus 26 l~i~-Ge~~~i~G~NGsGKSTLlk~l 50 (263)
T 2pjz_A 26 LEVN-GEKVIILGPNGSGKTTLLRAI 50 (263)
T ss_dssp EEEC-SSEEEEECCTTSSHHHHHHHH
T ss_pred EEEC-CEEEEEECCCCCCHHHHHHHH
Confidence 4566 999999999999999999644
No 156
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=91.03 E-value=0.11 Score=50.25 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=20.2
Q ss_pred ccccCceeeeecCCCCChhHHHHHHHH
Q 008638 222 PYQRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 222 PigkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
.+.+| ++|+|++|+|||+|+.-+..
T Consensus 47 ~~~~g--~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 47 RIPKG--VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHH
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHH
Confidence 34566 99999999999999975543
No 157
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=90.94 E-value=1 Score=48.10 Aligned_cols=29 Identities=31% Similarity=0.116 Sum_probs=24.9
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHHHhh
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~a~~ 253 (558)
++..+++.|++|+||||++..++...++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 57789999999999999999888776553
No 158
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.79 E-value=0.083 Score=53.36 Aligned_cols=31 Identities=35% Similarity=0.483 Sum_probs=28.0
Q ss_pred eecccccccCceeeeecCCCCChhHHHHHHH
Q 008638 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 217 ID~l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
||-|+.+-+|+..+|+|++|+|||||+..+.
T Consensus 156 i~~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 6778899999999999999999999997655
No 159
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.70 E-value=0.36 Score=48.63 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=19.4
Q ss_pred eeeeecCCCCChhHHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
-++|.|++|+|||+++..+.+..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999998776654
No 160
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.61 E-value=0.073 Score=55.40 Aligned_cols=31 Identities=26% Similarity=0.602 Sum_probs=25.4
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.=+.+.+|+.++|+|++|+|||||+. +|...
T Consensus 24 vsl~i~~Ge~~~llGpnGsGKSTLLr-~iaGl 54 (353)
T 1oxx_K 24 VNINIENGERFGILGPSGAGKTTFMR-IIAGL 54 (353)
T ss_dssp EEEEECTTCEEEEECSCHHHHHHHHH-HHHTS
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHH-HHhCC
Confidence 34578899999999999999999996 44443
No 161
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=90.60 E-value=0.11 Score=47.69 Aligned_cols=22 Identities=32% Similarity=0.298 Sum_probs=19.3
Q ss_pred CceeeeecCCCCChhHHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i 247 (558)
|..++|+|++|+|||||+..+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHh
Confidence 5678999999999999998664
No 162
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.60 E-value=0.13 Score=46.70 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.4
Q ss_pred cCceeeeecCCCCChhHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
+|..++|.|++|+||||++..+...
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6778999999999999999876543
No 163
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.51 E-value=0.12 Score=46.77 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=20.2
Q ss_pred cCceeeeecCCCCChhHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
+|.|++|+|.+|+|||+|+..+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999976653
No 164
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.36 E-value=0.17 Score=47.53 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=19.7
Q ss_pred CceeeeecCCCCChhHHHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
+.+++|.|++|+||||++..+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999975543
No 165
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.32 E-value=0.25 Score=46.21 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=24.2
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHHHhh
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~a~~ 253 (558)
+|.-..|.|++|+||||++..++++....
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~ 30 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLG 30 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 47778899999999999998888876543
No 166
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.31 E-value=0.12 Score=53.28 Aligned_cols=27 Identities=26% Similarity=0.521 Sum_probs=22.6
Q ss_pred cccc--CceeeeecCCCCChhHHHHHHHH
Q 008638 222 PYQR--GGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 222 Pigk--Gqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
.+.+ |++++|+|++|+|||||+..+..
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHHHH
Confidence 3566 99999999999999999975543
No 167
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.25 E-value=0.15 Score=49.27 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.7
Q ss_pred cCceeeeecCCCCChhHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
++..++|+|++|+|||||+..+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999976653
No 168
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=90.19 E-value=0.57 Score=47.50 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.3
Q ss_pred eeeecCCCCChhHHHHHHHHHH
Q 008638 229 IGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.++.|++|+|||+++..+++..
T Consensus 27 ~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 27 LLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHHHHH
Confidence 7889999999999998877654
No 169
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.18 E-value=0.32 Score=45.05 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=23.6
Q ss_pred cccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
..+|-.+.|.|++|+||||++..+....
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4467889999999999999998777654
No 170
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.16 E-value=0.29 Score=45.21 Aligned_cols=25 Identities=40% Similarity=0.579 Sum_probs=21.2
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
.-+.|.|++|+|||+|+..+.+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6799999999999999987766543
No 171
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.11 E-value=0.24 Score=51.56 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=25.2
Q ss_pred cccCceeeeecCCCCChhHHHHHHHHHHH
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
+.+|+.++|.|++|+|||||+.-++....
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 67899999999999999999987776543
No 172
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=90.06 E-value=0.14 Score=50.26 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=20.2
Q ss_pred ccccCceeeeecCCCCChhHHHHHHHH
Q 008638 222 PYQRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 222 PigkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
.+.+| ++|+|++|+|||+|+.-+..
T Consensus 71 ~~~~g--vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 71 RIPKG--VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp CCCCE--EEEECCTTSSHHHHHHHHHH
T ss_pred CCCCe--EEEECCCcChHHHHHHHHHH
Confidence 34566 99999999999999975543
No 173
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.04 E-value=0.54 Score=42.58 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=19.4
Q ss_pred eeeeecCCCCChhHHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.++|.|++|+||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999998776543
No 174
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.01 E-value=2 Score=45.72 Aligned_cols=29 Identities=24% Similarity=0.097 Sum_probs=25.0
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHHHhh
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~a~~ 253 (558)
+|..++|.|..|+||||++..++...+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 78889999999999999999888776543
No 175
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.88 E-value=0.16 Score=54.75 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=26.0
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHHHHHHh
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~ 252 (558)
.=+.+-+|++++|+|+.|+|||||+. ++.+..+
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr-~L~Gl~~ 163 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSR-TLCSYAL 163 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHH-HHHHTTH
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHH-HHhCccc
Confidence 34556699999999999999999996 4445443
No 176
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.86 E-value=0.31 Score=50.68 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=24.2
Q ss_pred cccCceeeeecCCCCChhHHHHHHHHHHH
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
..+|+.++|.|+.|+|||||+.-++....
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 56788999999999999999987765543
No 177
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.83 E-value=0.16 Score=45.32 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=23.0
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
..+..+.|.|++|+|||+|+..+.....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 4466789999999999999988876543
No 178
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.79 E-value=0.17 Score=49.54 Aligned_cols=29 Identities=31% Similarity=0.415 Sum_probs=23.4
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
.=+.+.+ +.++|+|++|+|||||+. ++..
T Consensus 18 isl~i~~-e~~~liG~nGsGKSTLl~-~l~G 46 (240)
T 2onk_A 18 VDFEMGR-DYCVLLGPTGAGKSVFLE-LIAG 46 (240)
T ss_dssp EEEEECS-SEEEEECCTTSSHHHHHH-HHHT
T ss_pred eEEEECC-EEEEEECCCCCCHHHHHH-HHhC
Confidence 3356778 999999999999999996 4443
No 179
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.72 E-value=0.26 Score=49.86 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=22.8
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
..+.-+.|.|++|+|||+|+..+.+...
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455799999999999999988876543
No 180
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=89.57 E-value=0.14 Score=54.41 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.9
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhh
Q 008638 228 KIGLFGGAGVGKTVLIMELINNVAKA 253 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n~a~~ 253 (558)
-+.|.|++|+|||+++..++....+.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 89999999999999999888776543
No 181
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.48 E-value=0.37 Score=47.33 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.4
Q ss_pred ceeeeecCCCCChhHHHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
..++|.|++|+|||+++..+.+..
T Consensus 43 ~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 348999999999999998777654
No 182
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=89.46 E-value=0.22 Score=45.22 Aligned_cols=26 Identities=42% Similarity=0.356 Sum_probs=21.9
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
.++..+.|.|++|+||||++..+...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 46778999999999999999866543
No 183
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=89.40 E-value=0.19 Score=49.14 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=21.2
Q ss_pred ccCceeeeecCCCCChhHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
.+|..++|.|++|+|||||+..+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 578899999999999999997554
No 184
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=89.38 E-value=0.41 Score=43.77 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=23.9
Q ss_pred cccCceeeeecCCCCChhHHHHHHHHHHH
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
..+|..+.|.|.+|+||||++..+.....
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34678899999999999999987766543
No 185
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=89.33 E-value=0.23 Score=44.98 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=21.4
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+|..+.|.|++|+||||++..+....
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36689999999999999998776644
No 186
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.30 E-value=0.37 Score=49.35 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=31.1
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEE
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG 262 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~ 262 (558)
....+|..++|.|.+|+|||||+..+..........+.|+..
T Consensus 51 ~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~ 92 (341)
T 2p67_A 51 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV 92 (341)
T ss_dssp GGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 457899999999999999999998777655433334555443
No 187
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=89.29 E-value=0.36 Score=49.75 Aligned_cols=36 Identities=28% Similarity=0.378 Sum_probs=26.6
Q ss_pred CceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEE
Q 008638 226 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFA 261 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~ 261 (558)
|.+++|+|.+|+|||||+..++.........+.|+.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~ 109 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence 678999999999999999888765433323444544
No 188
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=89.29 E-value=0.12 Score=52.12 Aligned_cols=30 Identities=30% Similarity=0.523 Sum_probs=26.7
Q ss_pred eecccccccCceeeeecCCCCChhHHHHHH
Q 008638 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 217 ID~l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
||-++.+-+|+.++|+|++|+|||||+..+
T Consensus 160 v~~lf~~l~geiv~l~G~sG~GKSTll~~l 189 (301)
T 1u0l_A 160 IEELKEYLKGKISTMAGLSGVGKSSLLNAI 189 (301)
T ss_dssp HHHHHHHHSSSEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEECCCCCcHHHHHHHh
Confidence 677888899999999999999999999644
No 189
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=89.28 E-value=0.59 Score=47.12 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=25.0
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHHHh
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~a~ 252 (558)
.+|+.++|+|+.|+||||++..++...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47899999999999999999888776543
No 190
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.11 E-value=0.2 Score=46.10 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=18.6
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|++|+|++|+|||+|+..+..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 789999999999999976654
No 191
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.05 E-value=0.37 Score=46.55 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=25.3
Q ss_pred eeccc-ccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 217 VDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 217 ID~l~-PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+|+.+ .+.+|..+.|.|++|+||||++..+....
T Consensus 16 ~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 16 ENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp ----CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34444 46689999999999999999998776654
No 192
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=88.87 E-value=1.3 Score=45.40 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=18.8
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
-++|.|++|||||+|+..+.+.
T Consensus 86 ~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999866554
No 193
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.84 E-value=0.25 Score=54.09 Aligned_cols=31 Identities=29% Similarity=0.451 Sum_probs=25.1
Q ss_pred EeecccccccCceeeeecCCCCChhHHHHHH
Q 008638 216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 216 vID~l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+++-+..+.+|++++|+|++|+|||||+.-+
T Consensus 37 ~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l 67 (538)
T 1yqt_A 37 VLYRLPVVKEGMVVGIVGPNGTGKSTAVKIL 67 (538)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHH
T ss_pred cccCcCcCCCCCEEEEECCCCCCHHHHHHHH
Confidence 3444436899999999999999999999643
No 194
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.80 E-value=0.25 Score=55.06 Aligned_cols=31 Identities=29% Similarity=0.488 Sum_probs=25.3
Q ss_pred EeecccccccCceeeeecCCCCChhHHHHHH
Q 008638 216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 216 vID~l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
.++.+..+.+|+.++|+|++|+|||||+.-+
T Consensus 93 ~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL 123 (608)
T 3j16_B 93 KLHRLPTPRPGQVLGLVGTNGIGKSTALKIL 123 (608)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHH
T ss_pred eecCCCCCCCCCEEEEECCCCChHHHHHHHH
Confidence 3444446789999999999999999999644
No 195
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=88.77 E-value=0.23 Score=44.23 Aligned_cols=22 Identities=23% Similarity=0.080 Sum_probs=18.6
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
.+.|.|++|+||||++..+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999876543
No 196
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.69 E-value=0.25 Score=43.22 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.3
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999877654
No 197
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.69 E-value=0.21 Score=45.99 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=18.7
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
+++|+|++|+|||+|+..+..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 899999999999999976654
No 198
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=88.63 E-value=0.14 Score=53.45 Aligned_cols=31 Identities=29% Similarity=0.375 Sum_probs=24.9
Q ss_pred eecccccccCceeeeecCCCCChhHHHHHHH
Q 008638 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 217 ID~l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+|-|....+|+.++|+|++|+|||||+..+.
T Consensus 206 l~~L~~~~~G~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 206 LKPLEEALTGRISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp HHHHHHHHTTSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCCCccHHHHHHHHh
Confidence 3445556789999999999999999996443
No 199
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.50 E-value=0.2 Score=43.50 Aligned_cols=22 Identities=32% Similarity=0.733 Sum_probs=19.2
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999777643
No 200
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.45 E-value=0.23 Score=44.28 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=18.5
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
+++|+|++|+|||+|+..+..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 789999999999999976653
No 201
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.39 E-value=0.25 Score=42.94 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.6
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|++|+|++|+|||+|+..+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 789999999999999987754
No 202
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.35 E-value=0.77 Score=48.77 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=18.2
Q ss_pred eeeecCCCCChhHHHHHHHHH
Q 008638 229 IGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i~n 249 (558)
++++||||||||.|+.-+++.
T Consensus 185 vLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHH
T ss_pred eEEeCCCCCCHHHHHHHHHHh
Confidence 899999999999999766554
No 203
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.29 E-value=0.47 Score=46.63 Aligned_cols=37 Identities=27% Similarity=0.315 Sum_probs=26.5
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhhcCCEEE-EEEecCC
Q 008638 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSV-FAGVGER 266 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V-~~~iGER 266 (558)
++.+.|.+|||||+++..++...++. ++.| ++-+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~--G~~V~v~d~D~q 45 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ--GVRVMAGVVETH 45 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCCT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC--CCCEEEEEeCCC
Confidence 46778999999999999888877654 4333 4445543
No 204
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.28 E-value=0.13 Score=53.25 Aligned_cols=29 Identities=31% Similarity=0.348 Sum_probs=24.7
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
=+.+-+|+.++|.|+.|+|||||+.-++.
T Consensus 169 ~~~i~~G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 169 RRAVQLERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp HHHHHTTCCEEEEESSSSCHHHHHHHHHT
T ss_pred HHHHhcCCEEEEECCCCCCHHHHHHHHHh
Confidence 34678999999999999999999976654
No 205
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=88.19 E-value=0.2 Score=55.12 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=24.0
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.+.+|++++|+|++|+|||||+.-+.
T Consensus 363 ~l~i~~G~~~~ivG~sGsGKSTll~~l~ 390 (582)
T 3b5x_A 363 SFSIPQGKTVALVGRSGSGKSTIANLFT 390 (582)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3568899999999999999999996443
No 206
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=88.08 E-value=0.27 Score=44.69 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=22.2
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+|..++|.|++|+||||++..+....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 68889999999999999998776543
No 207
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.04 E-value=0.25 Score=43.56 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=18.5
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|++|+|.+|+|||+|+..+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 789999999999999976653
No 208
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=88.01 E-value=0.31 Score=44.92 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=22.1
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+|-.+.|.|++|+||||++..+....
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999998776544
No 209
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.99 E-value=0.28 Score=42.89 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.2
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999877643
No 210
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=87.97 E-value=0.21 Score=45.37 Aligned_cols=21 Identities=38% Similarity=0.725 Sum_probs=18.7
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|+.|+|++|+|||+|+..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999987654
No 211
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=87.90 E-value=0.3 Score=45.64 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=18.7
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
+++|.|++|+||||++..+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999866543
No 212
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.82 E-value=0.24 Score=43.07 Aligned_cols=22 Identities=32% Similarity=0.709 Sum_probs=19.2
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999877643
No 213
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=87.76 E-value=0.34 Score=44.01 Aligned_cols=24 Identities=33% Similarity=0.257 Sum_probs=20.3
Q ss_pred CceeeeecCCCCChhHHHHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
+..+.|.|++|+||||++..+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999877643
No 214
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.68 E-value=0.25 Score=43.20 Aligned_cols=22 Identities=36% Similarity=0.758 Sum_probs=19.3
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++++|.+|+|||+|+..+..+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999877654
No 215
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=87.63 E-value=0.3 Score=45.72 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.1
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
+++|.|++|+||||++..+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999976643
No 216
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=87.63 E-value=0.33 Score=47.32 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=20.9
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
..+..++|.|++|||||+|+..+.+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34556999999999999999766543
No 217
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=87.62 E-value=0.24 Score=43.51 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=19.2
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999877643
No 218
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=87.52 E-value=0.31 Score=42.54 Aligned_cols=21 Identities=33% Similarity=0.760 Sum_probs=18.9
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|++|+|.+|+|||+|+..+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 789999999999999987765
No 219
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=87.49 E-value=0.26 Score=43.49 Aligned_cols=19 Identities=32% Similarity=0.315 Sum_probs=17.1
Q ss_pred eeeeecCCCCChhHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~ 246 (558)
-++|.|++|+||||++..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999876
No 220
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.42 E-value=0.29 Score=42.31 Aligned_cols=22 Identities=45% Similarity=0.813 Sum_probs=19.1
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++++|..|+|||+|+..+..+
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999877643
No 221
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=87.37 E-value=0.54 Score=46.83 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=17.1
Q ss_pred ceeeeecC-CCCChhHHHHHHHHH
Q 008638 227 GKIGLFGG-AGVGKTVLIMELINN 249 (558)
Q Consensus 227 qr~gIfGg-~g~GKT~L~~~~i~n 249 (558)
....+++| +|+|||+++..+.+.
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHH
Confidence 35666666 999999999766543
No 222
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=87.35 E-value=0.39 Score=51.04 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=24.0
Q ss_pred cccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
..+|+-++|.|+.|+|||||+.-++...
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 3689999999999999999998776544
No 223
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=87.31 E-value=0.37 Score=43.42 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=20.0
Q ss_pred CceeeeecCCCCChhHHHHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
|.-+.|.|.+|+||||++..+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999877543
No 224
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=87.18 E-value=0.28 Score=53.67 Aligned_cols=25 Identities=36% Similarity=0.707 Sum_probs=22.1
Q ss_pred ccccCceeeeecCCCCChhHHHHHH
Q 008638 222 PYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 222 PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
.+.+|+.++|+|+.|+|||||+.-+
T Consensus 308 ~i~~Ge~~~i~G~NGsGKSTLlk~l 332 (538)
T 1yqt_A 308 EIKKGEVIGIVGPNGIGKTTFVKML 332 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHH
Confidence 3679999999999999999999644
No 225
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=87.15 E-value=0.36 Score=43.35 Aligned_cols=23 Identities=35% Similarity=0.330 Sum_probs=19.7
Q ss_pred ceeeeecCCCCChhHHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n 249 (558)
|-++|.|++|+||||++..+...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 77999999999999999766543
No 226
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=87.14 E-value=0.33 Score=42.34 Aligned_cols=22 Identities=32% Similarity=0.703 Sum_probs=19.3
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999877653
No 227
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.14 E-value=0.31 Score=43.87 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=18.5
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
+++|+|++|+|||+|+..+..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 799999999999999976653
No 228
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.11 E-value=0.22 Score=47.72 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=22.4
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
++..+|.-++|.|+.|+|||||+..+
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L 40 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHF 40 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTT
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHH
Confidence 35678999999999999999999644
No 229
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=87.11 E-value=0.27 Score=54.01 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=23.5
Q ss_pred ccccccCceeeeecCCCCChhHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
=+.+.+|++++|+|++|+|||||+.-+
T Consensus 363 ~~~i~~G~~~~ivG~sGsGKSTLl~~l 389 (582)
T 3b60_A 363 NLKIPAGKTVALVGRSGSGKSTIASLI 389 (582)
T ss_dssp EEEECTTCEEEEEECTTSSHHHHHHHH
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 356889999999999999999999643
No 230
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=87.08 E-value=0.35 Score=43.81 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=20.0
Q ss_pred CceeeeecCCCCChhHHHHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
+-.++|.|++|+||||++..+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999876543
No 231
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.05 E-value=0.32 Score=42.75 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=18.1
Q ss_pred eeeeecCCCCChhHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i 247 (558)
|+.|+|.+|+|||+|+..+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999997665
No 232
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=87.04 E-value=0.28 Score=54.13 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=24.0
Q ss_pred cccccccCceeeeecCCCCChhHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
.=+.+-+|++++|+|++|+|||||+.-+
T Consensus 363 isl~i~~G~~~~ivG~sGsGKSTLl~~l 390 (595)
T 2yl4_A 363 FSLSIPSGSVTALVGPSGSGKSTVLSLL 390 (595)
T ss_dssp EEEEECTTCEEEEECCTTSSSTHHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 3456889999999999999999999643
No 233
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=87.01 E-value=0.28 Score=43.47 Aligned_cols=21 Identities=38% Similarity=0.692 Sum_probs=18.8
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|++|+|.+|+|||+|+..+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 789999999999999987764
No 234
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=86.98 E-value=0.38 Score=43.83 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=21.9
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
.++-.+.|.|++|+||||++..+...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46778999999999999999876543
No 235
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=86.95 E-value=0.28 Score=48.48 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=23.5
Q ss_pred ccccc---CceeeeecCCCCChhHHHHHHHH
Q 008638 221 APYQR---GGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 221 ~Pigk---Gqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
+.+.+ |.++.|+|++|+||||++..+..
T Consensus 40 ~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 40 EEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp HTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred hhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 44555 99999999999999999976654
No 236
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=86.94 E-value=0.3 Score=45.17 Aligned_cols=20 Identities=35% Similarity=0.614 Sum_probs=17.7
Q ss_pred eeeeecCCCCChhHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i 247 (558)
+++|.|++|+||||++..+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~ 22 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFR 22 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999997554
No 237
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=86.90 E-value=0.32 Score=42.54 Aligned_cols=21 Identities=43% Similarity=0.820 Sum_probs=18.6
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|++|+|.+|+|||+|+..+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 789999999999999987764
No 238
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=86.89 E-value=0.34 Score=42.87 Aligned_cols=21 Identities=43% Similarity=0.765 Sum_probs=18.9
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|++|+|++|+|||+|+..+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999987764
No 239
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=86.88 E-value=0.34 Score=46.67 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=17.7
Q ss_pred eeeecCCCCChhHHHHHHHH
Q 008638 229 IGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i~ 248 (558)
++|.|++|+|||+|+.-+.+
T Consensus 48 vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 89999999999999976654
No 240
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=86.87 E-value=0.36 Score=44.32 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.5
Q ss_pred eeeeecCCCCChhHHHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
-++|.|++|+|||+|+..+.+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 589999999999999988876543
No 241
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=86.85 E-value=0.37 Score=44.30 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=20.8
Q ss_pred cCceeeeecCCCCChhHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
+|-.+.|.|++|+||||++..+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 677899999999999999976654
No 242
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=86.85 E-value=0.64 Score=45.24 Aligned_cols=30 Identities=20% Similarity=0.124 Sum_probs=24.4
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHHHhh
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~a~~ 253 (558)
.+|+-+.|.|++|+||||++..++++....
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~ 39 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYA 39 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 467778888888999999999999886543
No 243
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=86.83 E-value=0.37 Score=53.64 Aligned_cols=31 Identities=32% Similarity=0.446 Sum_probs=25.2
Q ss_pred EeecccccccCceeeeecCCCCChhHHHHHH
Q 008638 216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 216 vID~l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+++-+..+.+|+.++|+|++|+|||||+.-+
T Consensus 107 ~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL 137 (607)
T 3bk7_A 107 VLYRLPIVKDGMVVGIVGPNGTGKTTAVKIL 137 (607)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHH
T ss_pred eeCCCCCCCCCCEEEEECCCCChHHHHHHHH
Confidence 3444445799999999999999999999643
No 244
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=86.77 E-value=0.29 Score=44.75 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=19.5
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|+.|+|.+|+|||+|+..++.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 8999999999999999877653
No 245
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=86.76 E-value=0.36 Score=42.26 Aligned_cols=22 Identities=32% Similarity=0.770 Sum_probs=19.4
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..++.+
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999877654
No 246
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=86.73 E-value=0.39 Score=47.98 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=20.6
Q ss_pred ccCceeeeecCCCCChhHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
..+.-++|.|++|||||+|+..+.+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHH
Confidence 4566799999999999999975554
No 247
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=86.71 E-value=0.35 Score=45.83 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=20.1
Q ss_pred ccCceeeeecCCCCChhHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
.++..+.|.|++|+||||++..+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999976654
No 248
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=86.65 E-value=0.34 Score=42.35 Aligned_cols=21 Identities=33% Similarity=0.939 Sum_probs=18.7
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|++|+|.+|+|||+|+..+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 799999999999999977654
No 249
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=86.64 E-value=0.36 Score=43.14 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=18.9
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|++|+|.+|+|||+|+..+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999987764
No 250
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=86.63 E-value=0.28 Score=53.95 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=23.2
Q ss_pred ccccccCceeeeecCCCCChhHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIME 245 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~ 245 (558)
=+.+.+|++++|+|++|+|||||+.-
T Consensus 361 sl~i~~G~~~~ivG~sGsGKSTll~~ 386 (578)
T 4a82_A 361 NLSIEKGETVAFVGMSGGGKSTLINL 386 (578)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHTT
T ss_pred EEEECCCCEEEEECCCCChHHHHHHH
Confidence 35789999999999999999999953
No 251
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.55 E-value=0.32 Score=51.05 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=24.2
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
+.+.+|..++|.|++|+|||||+..+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4678999999999999999999976553
No 252
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=86.48 E-value=0.31 Score=43.43 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.2
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999777643
No 253
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=86.48 E-value=0.31 Score=53.86 Aligned_cols=26 Identities=35% Similarity=0.532 Sum_probs=23.1
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+.+|++++|+|++|+|||||+.-+
T Consensus 376 l~i~~G~~~~ivG~sGsGKSTll~~l 401 (598)
T 3qf4_B 376 FHIKPGQKVALVGPTGSGKTTIVNLL 401 (598)
T ss_dssp EECCTTCEEEEECCTTSSTTHHHHHH
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHH
Confidence 56889999999999999999999633
No 254
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=86.47 E-value=0.41 Score=43.79 Aligned_cols=22 Identities=36% Similarity=0.721 Sum_probs=18.9
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
.+.|.|++|+||||++..+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5889999999999999877554
No 255
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=86.46 E-value=0.35 Score=44.30 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=19.6
Q ss_pred cCceeeeecCCCCChhHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
+.-|++|+|++|+|||+|+..+..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 445999999999999999987764
No 256
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=86.46 E-value=0.42 Score=43.43 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=21.1
Q ss_pred cCceeeeecCCCCChhHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
+|..+.|.|.+|+||||++..+...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5667899999999999999877643
No 257
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=86.43 E-value=1.2 Score=44.91 Aligned_cols=35 Identities=17% Similarity=-0.014 Sum_probs=24.2
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHHh---hcCCEEEEE
Q 008638 227 GKIGLFGGAGVGKTVLIMELINNVAK---AHGGFSVFA 261 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n~a~---~~~~v~V~~ 261 (558)
.-.++.|++|+|||+++..+++.... .|.++..+-
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~ 56 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID 56 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc
Confidence 46789999999999999877654211 245665543
No 258
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=86.42 E-value=0.71 Score=43.09 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=21.4
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHh
Q 008638 228 KIGLFGGAGVGKTVLIMELINNVAK 252 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n~a~ 252 (558)
.++|.|.+|+|||||+..++.....
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHh
Confidence 5789999999999999988876643
No 259
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=86.41 E-value=0.36 Score=48.59 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=22.4
Q ss_pred cccCceeeeecCCCCChhHHHHHHHHH
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
-.++..++|.|++|+|||||+..+...
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 457788999999999999999766543
No 260
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=86.41 E-value=3.7 Score=43.68 Aligned_cols=45 Identities=18% Similarity=0.059 Sum_probs=30.5
Q ss_pred CceeeeecCCCCChhHHHHHHHHHHHhh-cCCEEEEEEecCCchhH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELINNVAKA-HGGFSVFAGVGERTREG 270 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~n~a~~-~~~v~V~~~iGER~rEv 270 (558)
...+.++|..|+||||++..++...++. ..-+.++.+=-.|+.-.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~ 145 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAI 145 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHH
Confidence 3468888999999999999999887664 22344444433454433
No 261
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=86.39 E-value=0.32 Score=42.71 Aligned_cols=24 Identities=33% Similarity=0.474 Sum_probs=20.2
Q ss_pred cCceeeeecCCCCChhHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
+.-|++|+|.+|+|||+|+..+..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999987754
No 262
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=86.37 E-value=0.32 Score=42.62 Aligned_cols=20 Identities=40% Similarity=0.551 Sum_probs=17.7
Q ss_pred eeeeecCCCCChhHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i 247 (558)
|+.|+|.+|+|||+|+..+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 78999999999999997654
No 263
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=86.32 E-value=0.36 Score=42.74 Aligned_cols=22 Identities=41% Similarity=0.832 Sum_probs=19.4
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 8999999999999999877654
No 264
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=86.32 E-value=0.32 Score=43.49 Aligned_cols=22 Identities=45% Similarity=0.801 Sum_probs=19.3
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..++.+
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999877643
No 265
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=86.30 E-value=1.2 Score=51.19 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=22.7
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
.+...++|.|++|||||+|+..+.....
T Consensus 189 ~~~~~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 189 RTKNNPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 3445689999999999999987776654
No 266
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=86.26 E-value=0.46 Score=44.75 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.1
Q ss_pred cCceeeeecCCCCChhHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
+|-++.|.|++|+||||++..+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999877543
No 267
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=86.26 E-value=0.31 Score=43.22 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=18.8
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|++|+|.+|+|||+|+..+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 789999999999999987764
No 268
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=86.13 E-value=0.39 Score=43.03 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=19.5
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..++.+
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999877654
No 269
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=86.12 E-value=0.39 Score=43.44 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=19.3
Q ss_pred ceeeeecCCCCChhHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~ 248 (558)
=+++|+|.+|+|||+|+..+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3899999999999999987754
No 270
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=86.09 E-value=4 Score=39.77 Aligned_cols=52 Identities=15% Similarity=0.198 Sum_probs=33.3
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHHHhhcCCEE-EEEEecCCchhHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS-VFAGVGERTREGNDLYREMI 278 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~-V~~~iGER~rEv~d~~~e~~ 278 (558)
+|.-+.|.|++|+||||++..+....... +++ +...--..+.+.-+.++++.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~--~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQN--GIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHT--TCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCCeeeeecCCCCCHHHHHHHHHH
Confidence 67789999999999999998887665432 344 33222223344445555544
No 271
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.06 E-value=0.39 Score=43.66 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=19.5
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 8999999999999999877654
No 272
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=86.06 E-value=0.33 Score=44.27 Aligned_cols=22 Identities=23% Similarity=0.671 Sum_probs=19.6
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..++.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 8999999999999999877654
No 273
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=86.05 E-value=0.16 Score=52.05 Aligned_cols=28 Identities=29% Similarity=0.494 Sum_probs=23.7
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
+.+.+|+.++|.|+.|+|||||+.-++.
T Consensus 166 ~~i~~g~~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 166 DGIAIGKNVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp HHHHHTCCEEEEESTTSCHHHHHHHGGG
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999999975543
No 274
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=86.03 E-value=0.37 Score=44.75 Aligned_cols=19 Identities=42% Similarity=0.679 Sum_probs=16.9
Q ss_pred eeeeecCCCCChhHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~ 246 (558)
.++|.|++|+||||++..+
T Consensus 4 ~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999755
No 275
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=86.01 E-value=0.32 Score=53.62 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=23.3
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+.+|++++|+|++|+|||||+.-+
T Consensus 364 l~i~~Ge~~~ivG~sGsGKSTll~~l 389 (587)
T 3qf4_A 364 FSVKPGSLVAVLGETGSGKSTLMNLI 389 (587)
T ss_dssp EEECTTCEEEEECSSSSSHHHHHHTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 57889999999999999999999633
No 276
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=86.01 E-value=0.45 Score=44.09 Aligned_cols=23 Identities=26% Similarity=0.422 Sum_probs=19.5
Q ss_pred ceeeeecCCCCChhHHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n 249 (558)
-.++|.|++|+|||||+..+...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999877544
No 277
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=85.99 E-value=0.44 Score=43.32 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=19.5
Q ss_pred ceeeeecCCCCChhHHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n 249 (558)
.+++|.|++|+||||++..+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999877543
No 278
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=85.98 E-value=0.41 Score=42.21 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=19.2
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999877643
No 279
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=85.94 E-value=5.8 Score=43.10 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=23.3
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHHHhh
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~a~~ 253 (558)
+...+.|+|.+|+||||++..++...++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 44579999999999999999998776553
No 280
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=85.91 E-value=0.25 Score=44.05 Aligned_cols=22 Identities=32% Similarity=0.699 Sum_probs=19.4
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|+.|+|.+|+|||+|+..++.+
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 8999999999999999877653
No 281
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.89 E-value=0.58 Score=50.06 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=18.4
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
-++++||||||||.|+.-+++.
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eeEEECcCCCCHHHHHHHHHHH
Confidence 4899999999999999766543
No 282
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=85.85 E-value=1.3 Score=42.50 Aligned_cols=54 Identities=20% Similarity=0.163 Sum_probs=34.3
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHh
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIES 280 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~ 280 (558)
+|--+.|-|+.|+||||++..+...... .++.|+..---.+.+.-+.++++...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~--~~~~v~~~~~p~~~~~g~~i~~~l~~ 58 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRE--RGIEVQLTREPGGTPLAERIRELLLA 58 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEEESSCSSHHHHHHHHHHHS
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHH--cCCCcccccCCCCCHHHHHHHHHHhc
Confidence 6778899999999999999877765533 24555332222233444556666543
No 283
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.83 E-value=0.59 Score=50.07 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=18.6
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
-++++||+|||||.|+.-+++.
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999766554
No 284
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=85.83 E-value=0.35 Score=43.27 Aligned_cols=22 Identities=32% Similarity=0.687 Sum_probs=19.2
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999877643
No 285
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=85.81 E-value=0.49 Score=43.72 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=19.5
Q ss_pred cCceeeeecCCCCChhHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
+.-.++|.|++|+||||++..+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 334689999999999999976653
No 286
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=85.79 E-value=0.4 Score=42.89 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=18.1
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
.+.|.|++|+||||++..+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 478999999999999987754
No 287
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=85.79 E-value=0.41 Score=46.24 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=18.2
Q ss_pred eeeecCCCCChhHHHHHHHHH
Q 008638 229 IGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i~n 249 (558)
++|.|++|||||+|+..+.+.
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999766543
No 288
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=85.77 E-value=0.4 Score=42.33 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=18.9
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|++|+|.+|+|||+|+..+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 899999999999999987764
No 289
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=85.74 E-value=0.36 Score=42.96 Aligned_cols=21 Identities=33% Similarity=0.708 Sum_probs=18.8
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|++|+|.+|+|||+|+..+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 799999999999999977764
No 290
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=85.71 E-value=0.41 Score=43.72 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=21.5
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
.++-.++|.|++|+||||++..+...
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999866543
No 291
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=85.71 E-value=0.36 Score=42.95 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.0
Q ss_pred ceeeeecCCCCChhHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~ 248 (558)
=|++|+|.+|+|||+|+..+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3899999999999999976654
No 292
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=85.71 E-value=0.52 Score=43.65 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=20.5
Q ss_pred cCceeeeecCCCCChhHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
++-.+.|.|++|+||||++..+...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999876543
No 293
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=85.69 E-value=0.45 Score=46.68 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=19.5
Q ss_pred CceeeeecCCCCChhHHHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
+..++|.|++|||||+|+..+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 56789999999999999976544
No 294
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=85.69 E-value=0.33 Score=43.86 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.4
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|+.|+|++|+|||+|+..+..+
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999877653
No 295
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=85.68 E-value=0.36 Score=52.94 Aligned_cols=25 Identities=36% Similarity=0.611 Sum_probs=22.4
Q ss_pred ccccCceeeeecCCCCChhHHHHHH
Q 008638 222 PYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 222 PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
.+.+|+.++|+|++|+|||||+.-+
T Consensus 290 ~i~~Gei~~i~G~nGsGKSTLl~~l 314 (538)
T 3ozx_A 290 EAKEGEIIGILGPNGIGKTTFARIL 314 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHH
T ss_pred eECCCCEEEEECCCCCCHHHHHHHH
Confidence 5789999999999999999999644
No 296
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=85.68 E-value=0.36 Score=43.58 Aligned_cols=22 Identities=45% Similarity=0.813 Sum_probs=19.4
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++++|..|+|||+|+..+..+
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 8999999999999999877643
No 297
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=85.65 E-value=0.78 Score=46.31 Aligned_cols=27 Identities=22% Similarity=0.545 Sum_probs=22.9
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
.+..+.|.|++|+|||.|+.-+.+...
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 368899999999999999987776654
No 298
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=85.61 E-value=0.43 Score=43.24 Aligned_cols=22 Identities=45% Similarity=0.702 Sum_probs=19.2
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999877653
No 299
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.61 E-value=0.62 Score=49.78 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=22.0
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEE
Q 008638 229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG 262 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~ 262 (558)
+++.||+|||||.|+.-+++.. ++++|..
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~-----~~~~~~v 237 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANST-----KAAFIRV 237 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHH-----TCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh-----CCCeEEE
Confidence 8999999999999997665442 3455544
No 300
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=85.59 E-value=0.37 Score=43.19 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=18.4
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|++|+|.+|+|||+|+..+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 789999999999999976653
No 301
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=85.57 E-value=0.38 Score=53.54 Aligned_cols=25 Identities=36% Similarity=0.707 Sum_probs=22.1
Q ss_pred ccccCceeeeecCCCCChhHHHHHH
Q 008638 222 PYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 222 PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
.+.+|+.++|+|+.|+|||||+.-+
T Consensus 378 ~v~~Gei~~i~G~NGsGKSTLlk~l 402 (607)
T 3bk7_A 378 EIRKGEVIGIVGPNGIGKTTFVKML 402 (607)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHH
Confidence 3679999999999999999999644
No 302
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=85.53 E-value=0.51 Score=46.45 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=21.2
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.+..++|.|++|||||+|+..+.+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34469999999999999998776654
No 303
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.50 E-value=0.38 Score=42.75 Aligned_cols=22 Identities=41% Similarity=0.732 Sum_probs=19.2
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7999999999999999876543
No 304
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=85.43 E-value=0.35 Score=43.31 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=19.4
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999877653
No 305
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=85.43 E-value=0.75 Score=41.45 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=19.7
Q ss_pred eeeeecCCCCChhHHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.+.|.|++|+||||++..+....
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999998777654
No 306
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=85.43 E-value=0.45 Score=42.28 Aligned_cols=22 Identities=32% Similarity=0.771 Sum_probs=19.2
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7999999999999999877643
No 307
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=85.42 E-value=0.32 Score=54.36 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=21.7
Q ss_pred cccccCceeeeecCCCCChhHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLI 243 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~ 243 (558)
+.+.+|+.++|+|++|+|||||+
T Consensus 39 l~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 39 VEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEETTSEEEEECSTTSSHHHHH
T ss_pred EEECCCCEEEEECCCCCCHHHHh
Confidence 57889999999999999999997
No 308
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=85.36 E-value=0.41 Score=47.78 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=17.4
Q ss_pred eeeecCCCCChhHHHHHHHHH
Q 008638 229 IGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i~n 249 (558)
++|.|++|||||+|+..+++.
T Consensus 39 lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567799999999999876654
No 309
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=85.32 E-value=0.41 Score=43.20 Aligned_cols=24 Identities=38% Similarity=0.325 Sum_probs=16.0
Q ss_pred cCceeeeecCCCCChhHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
++..+.|.|.+|+||||++..+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 667899999999999999976643
No 310
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=85.32 E-value=0.4 Score=51.25 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=22.6
Q ss_pred cccccCce--eeeecCCCCChhHHHHHHH
Q 008638 221 APYQRGGK--IGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 221 ~PigkGqr--~gIfGg~g~GKT~L~~~~i 247 (558)
+.+.+|.. ++|+|++|+|||||+.-+.
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~ 63 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTLF 63 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHHH
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHHh
Confidence 56789999 9999999999999996554
No 311
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=85.26 E-value=0.48 Score=43.59 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=18.7
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|+.|+|.+|||||+|+..++.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999987653
No 312
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=85.22 E-value=0.36 Score=43.09 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=19.4
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 8999999999999999877643
No 313
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=85.22 E-value=0.5 Score=42.74 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=19.0
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
++.|.|++|+||||++..+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999877543
No 314
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=85.18 E-value=0.84 Score=42.51 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.3
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
..++|.|++|+|||||+..++....
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 3678999999999999988887654
No 315
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=85.07 E-value=0.53 Score=44.42 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.0
Q ss_pred cCceeeeecCCCCChhHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
+|-++.|.|++|+||||++..+...
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999766543
No 316
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=85.07 E-value=0.4 Score=43.69 Aligned_cols=22 Identities=32% Similarity=0.709 Sum_probs=19.1
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
+++|+|.+|+|||+|+..+..+
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999777643
No 317
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=84.88 E-value=0.53 Score=41.67 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=18.7
Q ss_pred cCceeeeecCCCCChhHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~ 246 (558)
.+.-++|.|++|||||+|+..+
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i 44 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYL 44 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHH
Confidence 4567999999999999999644
No 318
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=84.83 E-value=0.6 Score=43.61 Aligned_cols=25 Identities=40% Similarity=0.662 Sum_probs=21.7
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
-++.|+|.+|+|||+|+..++.+..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4899999999999999998887643
No 319
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=84.81 E-value=1.8 Score=42.61 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=20.1
Q ss_pred CceeeeecCCCCChhHHHHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
..-++|.|++|+|||+|+..+.+.
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999866554
No 320
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=84.73 E-value=0.43 Score=42.85 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=19.1
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|+.|+|.+|+|||+|+..+..+
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 8999999999999999776543
No 321
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=84.72 E-value=0.45 Score=42.06 Aligned_cols=21 Identities=33% Similarity=0.744 Sum_probs=18.4
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|++|+|.+|+|||+|+..++.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999976653
No 322
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=84.71 E-value=0.74 Score=51.12 Aligned_cols=49 Identities=22% Similarity=0.346 Sum_probs=31.9
Q ss_pred eeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIE 279 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e 279 (558)
=.+|.||||||||+.+.++|....+. +..|.+ |.-...-+.++...+.+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~--~~~ILv-~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQ--GLKVLC-CAPSNIAVDNLVERLAL 255 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEE-EESSHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhC--CCeEEE-EcCchHHHHHHHHHHHh
Confidence 36899999999999999999877654 334433 33344444444444433
No 323
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=84.71 E-value=0.45 Score=55.90 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=25.1
Q ss_pred cccccccCceeeeecCCCCChhHHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
.=+.+.+|++++|+|+.|+|||||+.-+.
T Consensus 454 vsl~I~~Ge~v~LiGpNGsGKSTLLk~La 482 (986)
T 2iw3_A 454 TQLRLKRARRYGICGPNGCGKSTLMRAIA 482 (986)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 44678899999999999999999997554
No 324
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=84.68 E-value=0.43 Score=47.45 Aligned_cols=21 Identities=33% Similarity=0.638 Sum_probs=17.8
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
+++|+|++|+|||||+.-+..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999965543
No 325
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=84.63 E-value=0.41 Score=45.82 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=19.6
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|+.|+|++|||||+|+..++.+
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 8999999999999999877654
No 326
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=84.62 E-value=0.52 Score=42.55 Aligned_cols=21 Identities=38% Similarity=0.779 Sum_probs=18.9
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|++|+|.+|+|||+|+..+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 799999999999999987764
No 327
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=84.60 E-value=0.52 Score=42.30 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=17.7
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|+.|+|.+|+|||+|+ ..+.+
T Consensus 16 ki~vvG~~~~GKssL~-~~l~~ 36 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNL-KWIYS 36 (198)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHh
Confidence 7899999999999999 44443
No 328
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=84.60 E-value=0.5 Score=49.86 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=24.7
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
|--+.+|.++||+|.+|+|||||+..+..
T Consensus 14 lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 14 WGRPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CSSSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 34577899999999999999999977665
No 329
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=84.53 E-value=0.64 Score=44.38 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=19.1
Q ss_pred ceeeeecCCCCChhHHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n 249 (558)
.-++|.|++|+|||+|+..+.+.
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999766543
No 330
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=84.52 E-value=0.52 Score=42.63 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=19.2
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999877643
No 331
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=84.49 E-value=0.52 Score=44.57 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=17.8
Q ss_pred eeeecCCCCChhHHHHHHHHH
Q 008638 229 IGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i~n 249 (558)
+-|.||+|+|||||+..++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999877653
No 332
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=84.48 E-value=0.53 Score=47.74 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=18.9
Q ss_pred ceeeeecCCCCChhHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~ 248 (558)
..++|.|++|+|||||+.-+..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 6799999999999999975544
No 333
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=84.48 E-value=0.42 Score=46.44 Aligned_cols=27 Identities=26% Similarity=0.151 Sum_probs=22.9
Q ss_pred ccccCceeeeecCCCCChhHHHHHHHH
Q 008638 222 PYQRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 222 PigkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
+..++..+.|.|++|+||||++..+..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 556777899999999999999987754
No 334
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=84.47 E-value=0.62 Score=43.66 Aligned_cols=28 Identities=39% Similarity=0.449 Sum_probs=23.7
Q ss_pred cccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+.+|..+.|.|.+|+||||++..+....
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999998776554
No 335
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=84.44 E-value=0.52 Score=43.02 Aligned_cols=22 Identities=41% Similarity=0.749 Sum_probs=19.3
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7999999999999999877643
No 336
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=84.36 E-value=0.57 Score=41.46 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=20.4
Q ss_pred cCceeeeecCCCCChhHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
+.-+++|+|.+|+|||+|+..+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999976654
No 337
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=84.34 E-value=0.63 Score=44.49 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=21.0
Q ss_pred ccCceeeeecCCCCChhHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
.+|.+++|.|++|+||||++..+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3677899999999999999975543
No 338
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=84.32 E-value=0.59 Score=45.26 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=20.8
Q ss_pred cCceeeeecCCCCChhHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
++-+++|+|++|+||||++..+...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4558999999999999999877543
No 339
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=84.30 E-value=0.45 Score=43.26 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=19.4
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|+.|+|.+|+|||+|+..+..+
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 8999999999999999877653
No 340
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=84.30 E-value=0.45 Score=43.23 Aligned_cols=21 Identities=33% Similarity=0.719 Sum_probs=18.8
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|++|+|.+|+|||+|+..+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 899999999999999977654
No 341
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=84.28 E-value=0.45 Score=44.00 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.4
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999877653
No 342
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=84.25 E-value=0.54 Score=42.53 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=18.8
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|++|+|.+|+|||+|+..+..
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 799999999999999987664
No 343
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=84.21 E-value=0.55 Score=42.64 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.3
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999877643
No 344
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=84.18 E-value=0.47 Score=42.91 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=19.8
Q ss_pred ceeeeecCCCCChhHHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n 249 (558)
-+++|+|.+|+|||+|+..++.+
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999877643
No 345
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.05 E-value=0.55 Score=43.51 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=19.2
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
+++|+|++|+|||+|+..+..+
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999877643
No 346
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=84.05 E-value=0.25 Score=53.89 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=23.5
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
+-+.+|+.++|.|+.|+|||||+..++.
T Consensus 255 ~~v~~g~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 255 LAIEHKFSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp HHHHTTCCEEEEESTTSSHHHHHHHHGG
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3456888999999999999999976654
No 347
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=83.97 E-value=0.63 Score=45.42 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=20.7
Q ss_pred cCceeeeecCCCCChhHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
.+.-++|.|++|||||+|+..+.+.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999866554
No 348
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=83.97 E-value=0.57 Score=42.10 Aligned_cols=22 Identities=36% Similarity=0.751 Sum_probs=19.3
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999877643
No 349
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=83.96 E-value=0.43 Score=47.97 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=21.2
Q ss_pred ccCceeeeecCCCCChhHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
-|+++++|+|.+|+|||||+..+..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHC
Confidence 3667999999999999999976654
No 350
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.96 E-value=0.56 Score=42.77 Aligned_cols=39 Identities=31% Similarity=0.482 Sum_probs=20.6
Q ss_pred eeeeeeEeecccccccCceeeeecCCCCChhHHHHHHHHH
Q 008638 210 LVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 210 l~TGIkvID~l~PigkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
+.||-..+..+.+ -+-=|++|+|.+|+|||+|+..+..+
T Consensus 13 ~~~~~~~~~~~~~-~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 13 LGTENLYFQSMAK-SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp ---------------CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCccccchhccCC-CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 3344444444443 23458999999999999999877643
No 351
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=83.88 E-value=0.53 Score=42.90 Aligned_cols=22 Identities=32% Similarity=0.777 Sum_probs=19.3
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7999999999999999877643
No 352
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=83.80 E-value=0.47 Score=43.48 Aligned_cols=21 Identities=48% Similarity=0.669 Sum_probs=18.8
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|++|+|.+|+|||+|+..+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 899999999999999977654
No 353
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.66 E-value=0.86 Score=48.86 Aligned_cols=31 Identities=32% Similarity=0.535 Sum_probs=22.6
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEec
Q 008638 229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG 264 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iG 264 (558)
++++||+|||||.|+.-+++.. ++++|...|
T Consensus 219 vLLyGPPGTGKTlLAkAiA~e~-----~~~fi~v~~ 249 (437)
T 4b4t_I 219 VILYGAPGTGKTLLAKAVANQT-----SATFLRIVG 249 (437)
T ss_dssp EEEESSTTTTHHHHHHHHHHHH-----TCEEEEEES
T ss_pred CceECCCCchHHHHHHHHHHHh-----CCCEEEEEH
Confidence 8999999999999997665442 345554433
No 354
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=83.58 E-value=0.66 Score=43.72 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=20.8
Q ss_pred cCceeeeecCCCCChhHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
++-.+.|.|++|+||||++..+...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999876543
No 355
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=83.56 E-value=0.68 Score=41.17 Aligned_cols=21 Identities=29% Similarity=0.197 Sum_probs=18.4
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
+++|.|++|+||||++..+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999986654
No 356
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=83.55 E-value=0.43 Score=53.29 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=24.2
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
=+.|.+|+.++|+|++|+|||||+..++
T Consensus 342 sl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 342 SVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred eeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 3678899999999999999999996443
No 357
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=83.55 E-value=0.36 Score=43.22 Aligned_cols=22 Identities=36% Similarity=0.706 Sum_probs=9.6
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999776643
No 358
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=83.51 E-value=0.57 Score=42.43 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=20.1
Q ss_pred ccccccCceeeeecCCCCChhHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIM 244 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~ 244 (558)
-+.+.+| ..+|+|+.|+|||+|+.
T Consensus 21 ~~~~~~g-~~~i~G~NGsGKStll~ 44 (182)
T 3kta_A 21 VIPFSKG-FTAIVGANGSGKSNIGD 44 (182)
T ss_dssp EEECCSS-EEEEEECTTSSHHHHHH
T ss_pred EEecCCC-cEEEECCCCCCHHHHHH
Confidence 3456667 88999999999999994
No 359
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=83.50 E-value=0.57 Score=42.78 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=18.6
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|++|+|.+|+|||+|+..+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999976654
No 360
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=83.32 E-value=0.65 Score=41.44 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=18.9
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
.+.|.|++|+||||++..+...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999877543
No 361
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=83.29 E-value=0.75 Score=45.15 Aligned_cols=39 Identities=26% Similarity=0.295 Sum_probs=25.9
Q ss_pred ceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCC
Q 008638 227 GKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER 266 (558)
+-++|.|++|||||+++..+...... ...-.+++-|.+-
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~-~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFD-TEEAMIRIDMTEY 86 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHS-CGGGEEEEEGGGC
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcC-CCcceEEeecccc
Confidence 46899999999999999766554322 1222445555543
No 362
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=83.29 E-value=0.52 Score=42.69 Aligned_cols=21 Identities=38% Similarity=0.477 Sum_probs=18.4
Q ss_pred ceeeeecCCCCChhHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i 247 (558)
-|+.|+|++|+|||+|+..+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~ 37 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLA 37 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 489999999999999997654
No 363
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=83.28 E-value=0.38 Score=43.32 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.7
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|++|+|.+|+|||+|+..+..
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 889999999999999976654
No 364
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.27 E-value=0.58 Score=42.31 Aligned_cols=22 Identities=32% Similarity=0.779 Sum_probs=19.4
Q ss_pred ceeeeecCCCCChhHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~ 248 (558)
-|++|+|.+|+|||+|+..+..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3899999999999999987765
No 365
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=83.23 E-value=0.46 Score=57.47 Aligned_cols=27 Identities=26% Similarity=0.473 Sum_probs=23.8
Q ss_pred ccccccCceeeeecCCCCChhHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
=+.|-+|++++|+|++|+|||||+.-+
T Consensus 1099 sl~I~~Ge~vaIVG~SGsGKSTL~~lL 1125 (1321)
T 4f4c_A 1099 SFSVEPGQTLALVGPSGCGKSTVVALL 1125 (1321)
T ss_dssp EEEECTTCEEEEECSTTSSTTSHHHHH
T ss_pred eEEECCCCEEEEECCCCChHHHHHHHH
Confidence 367889999999999999999999644
No 366
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=83.19 E-value=0.86 Score=42.96 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=18.6
Q ss_pred ceeeeecCCCCChhHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~ 248 (558)
-.+||.|+.|+||||++..+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999976643
No 367
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=83.18 E-value=0.59 Score=42.91 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.5
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 8999999999999999877653
No 368
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=83.18 E-value=0.67 Score=45.80 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.1
Q ss_pred CceeeeecCCCCChhHHHHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
|+-+.|.|++|+|||+|+.++.+.
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 578999999999999999887654
No 369
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=83.07 E-value=0.78 Score=43.75 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=20.7
Q ss_pred cCceeeeecCCCCChhHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
++.++.|.|++|+||||++..+...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999877544
No 370
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=83.07 E-value=0.69 Score=46.19 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=22.1
Q ss_pred ccccCceeeeecCCCCChhHHHHHHHH
Q 008638 222 PYQRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 222 PigkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
+-.+|.-+.|.|++|+|||||+..+..
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445566789999999999999987754
No 371
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=83.06 E-value=1.5 Score=42.52 Aligned_cols=57 Identities=21% Similarity=0.223 Sum_probs=33.6
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHHHhhc--CCEEEEEEecCCchhHHHHHHHHHHh
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAH--GGFSVFAGVGERTREGNDLYREMIES 280 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~--~~v~V~~~iGER~rEv~d~~~e~~e~ 280 (558)
.+|--+-|.|+.|+||||++..+.......+ .++.|+..--.++.+.-+.++++...
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~ 81 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLN 81 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHc
Confidence 4788899999999999999988776654321 13444433323344555556666544
No 372
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=83.05 E-value=0.5 Score=43.11 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=19.0
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 8999999999999999877643
No 373
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=83.04 E-value=0.66 Score=43.51 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=18.8
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
++.|.|++|+||||++..+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999877543
No 374
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=83.02 E-value=0.5 Score=43.75 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=19.8
Q ss_pred ceeeeecCCCCChhHHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n 249 (558)
=|++|+|.+|+|||+|+..+..+
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 38999999999999999777654
No 375
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=83.01 E-value=0.51 Score=42.83 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=19.5
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 8999999999999999877654
No 376
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=82.90 E-value=0.61 Score=47.25 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=19.2
Q ss_pred ceeeeecCCCCChhHHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n 249 (558)
.-++|.|++|||||+|+..+.+.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 45899999999999999766543
No 377
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=82.86 E-value=0.48 Score=43.69 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=18.9
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 8999999999999999877643
No 378
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=82.81 E-value=1.3 Score=45.43 Aligned_cols=30 Identities=27% Similarity=0.415 Sum_probs=24.7
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHHHhh
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~a~~ 253 (558)
++.-+++|.|.+|+|||||+..++...+..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 455689999999999999999888776543
No 379
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=82.79 E-value=0.59 Score=42.17 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=19.6
Q ss_pred CceeeeecCCCCChhHHHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
--|++|+|.+|+|||+|+..+..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44899999999999999976653
No 380
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=82.75 E-value=0.6 Score=42.23 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=18.5
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|+.|+|.+|+|||+|+..+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999976653
No 381
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=82.75 E-value=0.52 Score=44.01 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.5
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 8999999999999999877653
No 382
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=82.70 E-value=0.62 Score=43.39 Aligned_cols=22 Identities=50% Similarity=0.741 Sum_probs=19.5
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 8999999999999999877654
No 383
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=82.68 E-value=0.51 Score=43.54 Aligned_cols=19 Identities=42% Similarity=0.644 Sum_probs=17.4
Q ss_pred eeeeecCCCCChhHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~ 246 (558)
|+.|+|.+|+|||+|+..+
T Consensus 25 ki~vvG~~~vGKSsLi~~l 43 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTF 43 (195)
T ss_dssp EEEEECSTTSSHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 8999999999999999755
No 384
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=82.57 E-value=0.64 Score=42.65 Aligned_cols=21 Identities=38% Similarity=0.768 Sum_probs=18.7
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|++|+|.+|+|||+|+..+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999977654
No 385
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=82.56 E-value=0.74 Score=45.12 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=19.3
Q ss_pred ceeeeecCCCCChhHHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n 249 (558)
-.+.|.|++|+|||||+..+...
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999766543
No 386
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=82.56 E-value=0.67 Score=45.08 Aligned_cols=25 Identities=24% Similarity=0.177 Sum_probs=20.3
Q ss_pred cCceeeeecCCCCChhHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
....++|.|++|||||+|+..+.+.
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3457899999999999999766553
No 387
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=82.50 E-value=0.63 Score=41.77 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=20.2
Q ss_pred cCceeeeecCCCCChhHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
+.=|++|+|.+|+|||+|+..+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 445899999999999999976654
No 388
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=82.43 E-value=0.43 Score=42.55 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=19.5
Q ss_pred ccCceeeeecCCCCChhHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
-+.-|++|+|++|+|||+|+..+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 345589999999999999986443
No 389
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=82.30 E-value=1.2 Score=45.99 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=31.5
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYRE 276 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e 276 (558)
.+.-.+|+|++|+|||+++..++...... +..|++. + ..+|...+.+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~--~~~~~~~-D-~~~~~~~~~~~ 81 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ--GSRVIII-D-PEREYKEMCRK 81 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEE-E-SSCCSHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC--CCEEEEE-e-CCcCHHHHHHH
Confidence 56678999999999999998888765433 3333332 3 33555554443
No 390
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=82.25 E-value=0.52 Score=43.50 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=19.0
Q ss_pred CceeeeecCCCCChhHHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i 247 (558)
--|++|+|++|+|||+|+..+.
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 3489999999999999997664
No 391
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=82.20 E-value=0.73 Score=42.23 Aligned_cols=21 Identities=43% Similarity=0.820 Sum_probs=18.7
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|++|+|.+|+|||+|+..+..
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 899999999999999976653
No 392
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=82.20 E-value=0.7 Score=44.75 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.1
Q ss_pred cCceeeeecCCCCChhHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
.|..+.|.|++|+|||+|+.+++.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467799999999999999988864
No 393
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=82.14 E-value=0.71 Score=42.22 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=18.5
Q ss_pred CceeeeecCCCCChhHHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i 247 (558)
-..++|.|++|+||||++..+.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999997654
No 394
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=82.12 E-value=0.61 Score=43.68 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.5
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|+.|+|.+|+|||+|+..++.+
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 8999999999999999877654
No 395
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=82.08 E-value=0.69 Score=42.80 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=18.6
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|++|+|.+|+|||+|+..+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 799999999999999976654
No 396
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=82.06 E-value=1.1 Score=49.45 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=23.6
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHHHh
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNVAK 252 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~a~ 252 (558)
.++-+.|.|++|||||+++..++.....
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~ 230 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAES 230 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 5678999999999999999888766543
No 397
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.00 E-value=1 Score=48.69 Aligned_cols=22 Identities=36% Similarity=0.526 Sum_probs=18.4
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
-+++.||+|||||.|+.-+++.
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHH
T ss_pred ceEeeCCCCCcHHHHHHHHHhc
Confidence 4899999999999999766543
No 398
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=81.95 E-value=0.69 Score=46.51 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=19.0
Q ss_pred ceeeeecCCCCChhHHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n 249 (558)
..++|.|++|||||+|+..+.+.
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999766543
No 399
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=81.87 E-value=0.73 Score=41.57 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=18.8
Q ss_pred ceeeeecCCCCChhHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~ 248 (558)
..++|.|++|+||||++..+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999976654
No 400
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=81.83 E-value=0.59 Score=43.09 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.8
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|+.|+|.+|+|||+|+..+..
T Consensus 11 ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 899999999999999977764
No 401
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=81.81 E-value=0.8 Score=50.00 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=21.6
Q ss_pred cCceeeeecCCCCChhHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
+|.-++|+|++|||||+|+..+...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999755443
No 402
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=81.80 E-value=0.38 Score=44.69 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.3
Q ss_pred ceeeeecCCCCChhHHHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+.++|+|++|+|||||+.-++...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999997776554
No 403
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=81.71 E-value=0.75 Score=44.93 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=18.4
Q ss_pred eeeecCCCCChhHHHHHHHHH
Q 008638 229 IGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i~n 249 (558)
+.|.|++|+|||||+..++..
T Consensus 4 i~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHhc
Confidence 689999999999999888654
No 404
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=81.69 E-value=0.71 Score=42.63 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=18.7
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|++|+|.+|+|||+|+..+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 899999999999999976654
No 405
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=81.69 E-value=0.71 Score=43.86 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=18.1
Q ss_pred eeeeecCCCCChhHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i 247 (558)
|+.|+|.+|||||+|+..++
T Consensus 39 kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 89999999999999997654
No 406
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=81.67 E-value=0.68 Score=50.71 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=21.3
Q ss_pred cccCceeeeecCCCCChhHHHHHH
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
..+|+..+|+|+.|+|||||+.-+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL 45 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKIL 45 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHH
Confidence 558999999999999999999644
No 407
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=81.66 E-value=1.1 Score=41.60 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=22.0
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+--++.|+|.+|+|||+|+..++.+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 33478999999999999998888764
No 408
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=81.60 E-value=0.61 Score=43.08 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=18.8
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|++|+|.+|+|||+|+..+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 899999999999999987654
No 409
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=81.56 E-value=0.65 Score=45.17 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=21.4
Q ss_pred cccCceeeeecCCCCChhHHHHHHHHH
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
+.|.-.++|.|++|+|||+++..+++.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 344446999999999999999877654
No 410
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=81.46 E-value=0.83 Score=43.61 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=17.7
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
++.|+|+||+||+|++..+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999976653
No 411
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=81.45 E-value=0.73 Score=43.89 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=17.9
Q ss_pred eeeeecCCCCChhHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i 247 (558)
|++|+|.+|+|||+|+..+.
T Consensus 31 ~i~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 89999999999999996554
No 412
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=81.39 E-value=0.58 Score=49.72 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=18.0
Q ss_pred eeeeecCCCCChhHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i 247 (558)
.++|+|++|+|||||+.-+.
T Consensus 71 ~valvG~nGaGKSTLln~L~ 90 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLR 90 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 99999999999999996554
No 413
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=81.21 E-value=0.74 Score=41.97 Aligned_cols=22 Identities=32% Similarity=0.641 Sum_probs=18.8
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999876543
No 414
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=81.13 E-value=0.78 Score=42.16 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=18.6
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|++|+|.+|+|||+|+..+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 899999999999999976654
No 415
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=81.07 E-value=0.79 Score=45.30 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=21.1
Q ss_pred ceeeeecCCCCChhHHHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+-+.|.|++|+|||+|+.++.+..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 588999999999999999887654
No 416
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=81.05 E-value=0.8 Score=45.78 Aligned_cols=22 Identities=36% Similarity=0.388 Sum_probs=18.8
Q ss_pred ceeeeecCCCCChhHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~ 248 (558)
..++|.|++|||||+|+..+.+
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4699999999999999986644
No 417
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=81.02 E-value=0.76 Score=49.96 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=19.5
Q ss_pred cccCceeeeecCCCCChhHHHHHHHH
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
+.+| ++|+|++|+|||+|+.-+..
T Consensus 63 ip~G--vLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 63 IPKG--VLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp CCSE--EEEECSSSSSHHHHHHHHHH
T ss_pred CCce--EEEECCCCCCHHHHHHHHHH
Confidence 4456 99999999999999975543
No 418
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.91 E-value=0.74 Score=46.19 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=22.9
Q ss_pred ccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 222 PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 222 PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
--+++..++|.|++|+|||+++..+....
T Consensus 32 ~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 32 QPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred hCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34566669999999999999998666543
No 419
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=80.89 E-value=0.61 Score=43.51 Aligned_cols=22 Identities=41% Similarity=0.685 Sum_probs=19.0
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 8999999999999999877643
No 420
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=80.71 E-value=0.73 Score=42.19 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=18.4
Q ss_pred ceeeeecCCCCChhHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i 247 (558)
=|++|+|++|+|||+|+..+.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999997654
No 421
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=80.63 E-value=0.62 Score=42.17 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.2
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 8999999999999999766543
No 422
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=80.56 E-value=1.3 Score=42.73 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=26.9
Q ss_pred CceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCch
Q 008638 226 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTR 268 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~r 268 (558)
+.-++|.|++|||||+|+..+.+. ......-.+++-|.+-..
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~-~~~~~~~~~~v~~~~~~~ 70 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYL-SSRWQGPFISLNCAALNE 70 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHT-STTTTSCEEEEEGGGSCH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHh-cCccCCCeEEEecCCCCh
Confidence 467899999999999999755432 221112345566665443
No 423
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=80.48 E-value=0.63 Score=46.58 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=21.0
Q ss_pred ccCceeeeecCCCCChhHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
..|.-++|.|++|||||+|+..+.+
T Consensus 44 ~~~~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 44 CTGGHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp HHTCCEEEESCCCHHHHHHHHHHHH
T ss_pred HcCCeEEEECCCCCcHHHHHHHHHH
Confidence 3467899999999999999976654
No 424
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.20 E-value=1.1 Score=44.76 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=20.4
Q ss_pred ceeeeecCCCCChhHHHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
..++|.|++|+|||+++..+....
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999998777654
No 425
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=80.11 E-value=0.55 Score=55.15 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=24.1
Q ss_pred cccccccCceeeeecCCCCChhHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
.=+.+.+|++++|+|+.|+|||||+.-+
T Consensus 692 VSl~I~~GeivaIiGpNGSGKSTLLklL 719 (986)
T 2iw3_A 692 INFQCSLSSRIAVIGPNGAGKSTLINVL 719 (986)
T ss_dssp EEEEEETTCEEEECSCCCHHHHHHHHHH
T ss_pred cEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 3467889999999999999999999633
No 426
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=80.10 E-value=0.84 Score=46.83 Aligned_cols=20 Identities=35% Similarity=0.443 Sum_probs=17.2
Q ss_pred eeeeecCCCCChhHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i 247 (558)
-+||.|++|+|||||+..+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999996543
No 427
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=80.10 E-value=1.1 Score=41.19 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=18.8
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
.++|.|++|+||||++..+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999866543
No 428
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=80.05 E-value=0.7 Score=46.51 Aligned_cols=20 Identities=35% Similarity=0.649 Sum_probs=17.4
Q ss_pred eeeeecCCCCChhHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i 247 (558)
+++|+|++|+|||||+..+.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~ 39 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLF 39 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 45999999999999997654
No 429
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=80.00 E-value=1 Score=44.16 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=19.5
Q ss_pred ceeeeecCCCCChhHHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~n 249 (558)
-|.||+|++|+||||++..+...
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 48999999999999999766543
No 430
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=79.93 E-value=0.43 Score=43.40 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=4.7
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..+..+
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 8999999999999999777654
No 431
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=79.90 E-value=0.8 Score=44.81 Aligned_cols=20 Identities=35% Similarity=0.604 Sum_probs=17.9
Q ss_pred eeeeecCCCCChhHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i 247 (558)
+++|+|.+|+|||+|+..+.
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~ 24 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALT 24 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 78999999999999997664
No 432
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=79.83 E-value=0.95 Score=49.07 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=23.7
Q ss_pred cccccCceeeeecCCCCChhHHHHHHHHHHHh
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~ 252 (558)
+.+.+ +.++|+|++|+|||||+. ++....+
T Consensus 25 l~i~~-e~~~liG~nGsGKSTLl~-~l~Gl~~ 54 (483)
T 3euj_A 25 FDFDE-LVTTLSGGNGAGKSTTMA-GFVTALI 54 (483)
T ss_dssp EECCS-SEEEEECCTTSSHHHHHH-HHHHHHC
T ss_pred EEEcc-ceEEEECCCCCcHHHHHH-HHhcCCC
Confidence 46777 999999999999999996 4444433
No 433
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=79.83 E-value=0.46 Score=44.03 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=19.6
Q ss_pred eeeeecCCCCChhHHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.+.|.|++|+||||++..+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999998777654
No 434
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=79.77 E-value=0.95 Score=43.75 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=18.3
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
.++|.|++|+||||++..+..
T Consensus 24 iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999976654
No 435
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=79.70 E-value=0.98 Score=42.29 Aligned_cols=21 Identities=43% Similarity=0.695 Sum_probs=18.8
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
|+.|+|.+|+|||+|+..+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~ 35 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTK 35 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 899999999999999987654
No 436
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=79.35 E-value=1.9 Score=46.99 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=35.8
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHHHHHHhhc-C-CEEEEEEecCCchh
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH-G-GFSVFAGVGERTRE 269 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i~n~a~~~-~-~v~V~~~iGER~rE 269 (558)
.+.+.+|..++|.|.+|+|||+++..|+...+..+ + ++.++ +++-++.|
T Consensus 161 ~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~-liDpK~~e 211 (512)
T 2ius_A 161 VADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFI-MIDPKMLE 211 (512)
T ss_dssp EEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEE-EECCSSSG
T ss_pred EEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEE-EECCchhh
Confidence 34567899999999999999999998887765433 2 45544 55655444
No 437
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=79.29 E-value=1.1 Score=42.47 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=18.6
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
.+.|.|++|+||||++..+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999876543
No 438
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=79.24 E-value=0.82 Score=43.05 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=17.9
Q ss_pred eeeeecCCCCChhHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i 247 (558)
|+.|+|.+|+|||+|+..++
T Consensus 31 kI~vvG~~~vGKSsLin~l~ 50 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVS 50 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 89999999999999997654
No 439
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=79.16 E-value=2.1 Score=40.44 Aligned_cols=31 Identities=19% Similarity=0.123 Sum_probs=25.4
Q ss_pred cccCceeeeecCCCCChhHHHHHHHHHHHhh
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~n~a~~ 253 (558)
..+|+=..+.|+.|+||||.+..+++|....
T Consensus 5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~ 35 (191)
T 1xx6_A 5 KDHGWVEVIVGPMYSGKSEELIRRIRRAKIA 35 (191)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 4567778888999999999999999886543
No 440
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=79.10 E-value=1.1 Score=43.68 Aligned_cols=26 Identities=31% Similarity=0.225 Sum_probs=21.6
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
++..+.|.|.+|+||||++..+....
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999998876543
No 441
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=79.08 E-value=0.56 Score=43.74 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=19.2
Q ss_pred eeeeecCCCCChhHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n 249 (558)
|++|+|.+|+|||+|+..++.+
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999875554
No 442
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=79.07 E-value=0.88 Score=54.84 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=24.3
Q ss_pred cccccccCceeeeecCCCCChhHHHHHH
Q 008638 219 LLAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 219 ~l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
.=+.+.+|++++|+|++|+|||||+.-+
T Consensus 1052 vsl~i~~Ge~v~ivG~sGsGKSTl~~~l 1079 (1284)
T 3g5u_A 1052 LSLEVKKGQTLALVGSSGCGKSTVVQLL 1079 (1284)
T ss_dssp CCEEECSSSEEEEECSSSTTHHHHHHHH
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 3467899999999999999999999644
No 443
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=79.05 E-value=0.96 Score=50.35 Aligned_cols=27 Identities=33% Similarity=0.501 Sum_probs=21.4
Q ss_pred ccccccC-----ceeeeecCCCCChhHHHHHH
Q 008638 220 LAPYQRG-----GKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 220 l~PigkG-----qr~gIfGg~g~GKT~L~~~~ 246 (558)
-+.+.+| +.++|+|++|+|||||+.-+
T Consensus 367 sl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l 398 (608)
T 3j16_B 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLL 398 (608)
T ss_dssp EEEECCEECCTTCEEEEESCTTSSHHHHHHHH
T ss_pred EEEEecCccccceEEEEECCCCCcHHHHHHHH
Confidence 3445555 88999999999999999633
No 444
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=79.00 E-value=1.6 Score=48.36 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=34.1
Q ss_pred CceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhc
Q 008638 226 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~ 281 (558)
..-..|.||+|||||+++.+++....+.. +..|.+ |.-...-+.++...+.+.|
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l~~~~-~~~ilv-~a~tn~A~~~l~~~l~~~~ 248 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHLARQG-NGPVLV-CAPSNIAVDQLTEKIHQTG 248 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHTSS-SCCEEE-EESSHHHHHHHHHHHHTTT
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHHcC-CCeEEE-EeCcHHHHHHHHHHHHhcC
Confidence 45678999999999999999987765422 223322 3333444555555555443
No 445
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=78.96 E-value=1.4 Score=46.00 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=26.7
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEE
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG 262 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~ 262 (558)
.-+-++|+|++|+|||+++..++.+..+. +.+|++.
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~--g~~viv~ 87 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLR--GDRMVIV 87 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHT--TCEEEEE
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEE
Confidence 35688999999999999998888776553 3344443
No 446
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=78.93 E-value=1.1 Score=41.87 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=18.1
Q ss_pred CceeeeecCCCCChhHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~ 246 (558)
+-.++|.|++|+||||++..+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L 24 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAF 24 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 446899999999999999755
No 447
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=78.86 E-value=0.96 Score=41.34 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=16.9
Q ss_pred eeeeecCCCCChhHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~ 246 (558)
|+.|+|.+|+|||+|+..+
T Consensus 22 ki~~vG~~~vGKTsLi~~l 40 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVV 40 (196)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 8999999999999998643
No 448
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.65 E-value=1.1 Score=45.19 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=18.9
Q ss_pred eeeecCCCCChhHHHHHHHHHH
Q 008638 229 IGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+++.|++|+|||+++..+....
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999998766553
No 449
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=78.57 E-value=0.98 Score=48.80 Aligned_cols=20 Identities=40% Similarity=0.544 Sum_probs=17.6
Q ss_pred eeeecCCCCChhHHHHHHHH
Q 008638 229 IGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i~ 248 (558)
++|.|++|||||+|+.-+..
T Consensus 52 vLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999976554
No 450
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=78.55 E-value=1.2 Score=45.49 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=19.1
Q ss_pred CceeeeecCCCCChhHHHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
+..++|.|++|||||+++..+..
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999975543
No 451
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=78.52 E-value=0.87 Score=54.89 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=23.7
Q ss_pred ccccccCceeeeecCCCCChhHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
=+.+.+|++++|+|++|+|||||+.-+
T Consensus 410 sl~i~~G~~~~ivG~sGsGKSTl~~ll 436 (1284)
T 3g5u_A 410 NLKVKSGQTVALVGNSGCGKSTTVQLM 436 (1284)
T ss_dssp EEEECTTCEEEEECCSSSSHHHHHHHT
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 367899999999999999999999633
No 452
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=78.22 E-value=0.84 Score=45.51 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=19.2
Q ss_pred CceeeeecCCCCChhHHHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
++-++|.|++|||||+|+..+.+
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHH
Confidence 44599999999999999976654
No 453
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=78.13 E-value=0.99 Score=43.46 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=18.9
Q ss_pred ceeeeecCCCCChhHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~ 248 (558)
-+++|+|.+|+|||+|+..++.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 3899999999999999976653
No 454
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=78.11 E-value=1.5 Score=47.83 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=23.5
Q ss_pred CceeeeecCCCCChhHHHHHHHHHHHhh
Q 008638 226 GGKIGLFGGAGVGKTVLIMELINNVAKA 253 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~n~a~~ 253 (558)
.+.+.|.||||+|||+++.+-|.+..+.
T Consensus 22 ~~~~lV~a~aGsGKT~~l~~ri~~l~~~ 49 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLVHRIAWLMSV 49 (647)
T ss_dssp SSCEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 5678999999999999998877776654
No 455
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=79.41 E-value=0.45 Score=43.75 Aligned_cols=24 Identities=33% Similarity=0.464 Sum_probs=20.1
Q ss_pred CceeeeecCCCCChhHHHHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
.=|++|+|.+|+|||+|+..+..+
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 348999999999999999766643
No 456
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=77.79 E-value=1.7 Score=43.53 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=17.4
Q ss_pred cCceeeeecCCCCChhHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
++-.++|-|++|+||||++..+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3446899999999999999877653
No 457
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=77.76 E-value=0.76 Score=41.44 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=18.7
Q ss_pred cCceeeeecCCCCChhHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+-=|++|+|.+|+|||+|+..+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l 42 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRL 42 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHH
Confidence 3458999999999999998655
No 458
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=77.72 E-value=1.1 Score=42.42 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=21.8
Q ss_pred cCceeeeecCCCCChhHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
-|.-++|.|++|+|||||+.+++.+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4667899999999999999988763
No 459
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=77.70 E-value=1.3 Score=49.06 Aligned_cols=29 Identities=24% Similarity=0.155 Sum_probs=21.0
Q ss_pred EEEEEecc-ccCcccCceEEecCCCceecc
Q 008638 135 VRTIAMDG-TEGLVRGQRVLNTGSPITVPV 163 (558)
Q Consensus 135 Vr~i~l~~-t~GL~~G~~V~~tg~~~~VpV 163 (558)
+.+++.++ ++.+++||.|.-||-....|.
T Consensus 207 ~~v~l~~dlv~~~~pGd~v~v~Gi~~~~~~ 236 (595)
T 3f9v_A 207 LEIILEDDLVDSARPGDRVKVTGILDIKQD 236 (595)
T ss_dssp EEEEEEGGGTTCSCSSCEEEEEEECCCCCS
T ss_pred EEEEEecccccccccCCEEEEEEEEEeccc
Confidence 44555555 478899999999997666665
No 460
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=77.47 E-value=1.1 Score=49.54 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=22.5
Q ss_pred ccccCceeeeecCCCCChhHHHHHHHH
Q 008638 222 PYQRGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 222 PigkGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
-+..|..++|.|++|+|||+|+..+..
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHHHHHhc
Confidence 355788999999999999999975544
No 461
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=77.26 E-value=4 Score=39.04 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=34.1
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHHHhhcCCE-EEEEEecC-CchhHHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGF-SVFAGVGE-RTREGNDLYREMIE 279 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v-~V~~~iGE-R~rEv~d~~~e~~e 279 (558)
+|--+.|-|+.|+||||++..+....... ++ .|. ..-| .+...-+.++++..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~--~~~~v~-~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQL--GIRDMV-FTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEE-EEESSCSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCcce-eeeCCCCCHHHHHHHHHHh
Confidence 56778899999999999998777665432 33 332 2233 34455566666654
No 462
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=77.21 E-value=1.4 Score=45.03 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=19.2
Q ss_pred CceeeeecCCCCChhHHHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
..-++|.|++|||||+|+..+.+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 44689999999999999976644
No 463
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=77.19 E-value=1.3 Score=46.91 Aligned_cols=30 Identities=30% Similarity=0.485 Sum_probs=24.2
Q ss_pred ccccccCceeeeecCCCCChhHHHHHHHHH
Q 008638 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 220 l~PigkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
+--+.+|.+++|+|.+|+|||||+..+...
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 334677889999999999999999776643
No 464
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=76.77 E-value=1.4 Score=42.68 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=17.3
Q ss_pred eeeeecCCCCChhHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~ 248 (558)
-+.|+|+||+||+|++..+..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999976654
No 465
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=76.72 E-value=1.4 Score=45.12 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=19.2
Q ss_pred CceeeeecCCCCChhHHHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
...++|.|++|||||+|+..+.+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999976654
No 466
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=76.65 E-value=0.71 Score=40.79 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=18.0
Q ss_pred cCceeeeecCCCCChhHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~ 246 (558)
.+.-++|.|++|||||+++..+
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGG
T ss_pred CCCcEEEECCCCccHHHHHHHH
Confidence 3456999999999999998633
No 467
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=76.62 E-value=1.5 Score=46.50 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=20.8
Q ss_pred CceeeeecCCCCChhHHHHHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+..+++.|++|||||+|+..+.+..
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHh
Confidence 4569999999999999998776553
No 468
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=76.51 E-value=2.7 Score=47.42 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=22.5
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.+...++|.|++|||||+|+..+....
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 455579999999999999998777665
No 469
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=76.43 E-value=1.6 Score=46.68 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=22.4
Q ss_pred ccCceeeeecCCCCChhHHHHHHHHHHH
Q 008638 224 QRGGKIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 224 gkGqr~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
.+...++|+|++|||||+|+..+.....
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 3455789999999999999987766543
No 470
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=76.28 E-value=1.6 Score=42.52 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=21.1
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+...++|.|++|+|||+++..+.+..
T Consensus 37 ~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 37 NIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 33359999999999999998776654
No 471
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=76.20 E-value=1.1 Score=41.49 Aligned_cols=20 Identities=50% Similarity=0.775 Sum_probs=17.9
Q ss_pred eeeeecCCCCChhHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i 247 (558)
|++|+|.+|+|||+|+..++
T Consensus 13 ki~vvG~~~~GKSsli~~l~ 32 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVL 32 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 78999999999999997665
No 472
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=76.12 E-value=1.3 Score=43.94 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=18.9
Q ss_pred ceeeeecCCCCChhHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~ 248 (558)
-+++|+|.+|||||+|+..+..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 3789999999999999977653
No 473
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=76.08 E-value=1.3 Score=46.87 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=18.7
Q ss_pred ceeeeecCCCCChhHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~ 248 (558)
.-++|.|++|||||+|+..+.+
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999976554
No 474
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=75.85 E-value=1 Score=49.57 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=24.8
Q ss_pred ccccCceeeeecCCCCChhHHHHHHHHHH
Q 008638 222 PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 222 PigkGqr~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
.+-+|+.+.|+|.+|+|||||+..+....
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhh
Confidence 46799999999999999999998666543
No 475
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=75.71 E-value=1.8 Score=43.43 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=28.1
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchh
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTRE 269 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rE 269 (558)
.+..++|.|++|||||+++..+ ++.......-.|++-|+.-+.+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i-~~~~~~~~~~~v~v~~~~~~~~ 67 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARAL-HACSARSDRPLVTLNCAALNES 67 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHH-HHHSSCSSSCCCEEECSSCCHH
T ss_pred CCCcEEEECCCCchHHHHHHHH-HHhCcccCCCeEEEeCCCCChH
Confidence 3567999999999999999654 4332211222355666665543
No 476
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=75.66 E-value=1.1 Score=47.70 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=24.7
Q ss_pred ecccccccCceeeeecCCCCChhHHHHHHH
Q 008638 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 218 D~l~PigkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
|+-+-+-.|..++|+|.+|+|||||+..+.
T Consensus 149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Ls 178 (416)
T 1udx_A 149 RLRLELMLIADVGLVGYPNAGKSSLLAAMT 178 (416)
T ss_dssp EEEEEECCSCSEEEECCGGGCHHHHHHHHC
T ss_pred eeeeEEcCCCEEEEECCCCCcHHHHHHHHH
Confidence 444567788999999999999999997553
No 477
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=75.65 E-value=1.7 Score=45.40 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=22.7
Q ss_pred cccCce--eeeecCCCCChhHHHHHHHHHH
Q 008638 223 YQRGGK--IGLFGGAGVGKTVLIMELINNV 250 (558)
Q Consensus 223 igkGqr--~gIfGg~g~GKT~L~~~~i~n~ 250 (558)
+..|++ +.|+|++|+||||++..+....
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 446777 9999999999999997766543
No 478
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=75.55 E-value=1.3 Score=44.63 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=20.2
Q ss_pred cCceeeeecCCCCChhHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
|-++++|+|.+|+|||+|+..++.
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g 29 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLG 29 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHhC
Confidence 445899999999999999977653
No 479
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=75.53 E-value=2.2 Score=45.46 Aligned_cols=28 Identities=32% Similarity=0.325 Sum_probs=23.7
Q ss_pred CceeeeecCCCCChhHHHHHHHHHHHhh
Q 008638 226 GGKIGLFGGAGVGKTVLIMELINNVAKA 253 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~n~a~~ 253 (558)
...++|+|.+|+||||++..++...++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3589999999999999999888776543
No 480
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=75.44 E-value=1.6 Score=44.95 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=19.2
Q ss_pred CceeeeecCCCCChhHHHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
+.-++|.|++|||||+|+..+..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999976643
No 481
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=75.35 E-value=1.5 Score=50.34 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.5
Q ss_pred cccCceeeeecCCCCChhHHHHHHH
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+..|..++|.|++|||||+|+.-+.
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala 259 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHH
Confidence 5678899999999999999997553
No 482
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=75.32 E-value=1.3 Score=43.45 Aligned_cols=26 Identities=35% Similarity=0.599 Sum_probs=17.8
Q ss_pred ccccCc--eeeeecCCCCChhHHHHHHH
Q 008638 222 PYQRGG--KIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 222 PigkGq--r~gIfGg~g~GKT~L~~~~i 247 (558)
|+-||. ++.|+|.+|+|||+|+..+.
T Consensus 2 p~~~g~~~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 2 PLGSGFEFTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp -----CEEEEEEEECTTSSHHHHHHHHS
T ss_pred CCcCccEEEEEEECCCCCCHHHHHHHHh
Confidence 444553 79999999999999996543
No 483
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=75.16 E-value=1.4 Score=43.06 Aligned_cols=20 Identities=45% Similarity=0.579 Sum_probs=18.1
Q ss_pred eeeeecCCCCChhHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i 247 (558)
+++|+|.+|+|||+|+..+.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~ 26 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALT 26 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999997665
No 484
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=75.15 E-value=2.2 Score=47.16 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=23.7
Q ss_pred cCceeeeecCCCCChhHHHHHHHHHHHh
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINNVAK 252 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n~a~ 252 (558)
.+.-+.|.|++|||||+++..++....+
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll~~l~~ 190 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLLAALIQ 190 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 6778999999999999999888776543
No 485
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=74.76 E-value=1.5 Score=42.42 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=17.7
Q ss_pred eeeeecCCCCChhHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i 247 (558)
|++|+|.+|+|||+|+..+.
T Consensus 23 ~I~lvG~~g~GKSSlin~l~ 42 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSIL 42 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 88999999999999986554
No 486
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=74.56 E-value=1.3 Score=53.46 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=23.2
Q ss_pred cccccCceeeeecCCCCChhHHHHHH
Q 008638 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (558)
Q Consensus 221 ~PigkGqr~gIfGg~g~GKT~L~~~~ 246 (558)
+.+-+|++++|+|++|+|||||+.-+
T Consensus 439 l~i~~G~~vaivG~sGsGKSTll~ll 464 (1321)
T 4f4c_A 439 LRVNAGQTVALVGSSGCGKSTIISLL 464 (1321)
T ss_dssp EEECTTCEEEEEECSSSCHHHHHHHH
T ss_pred EeecCCcEEEEEecCCCcHHHHHHHh
Confidence 56789999999999999999999644
No 487
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=73.73 E-value=2.8 Score=48.12 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=33.5
Q ss_pred CceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhc
Q 008638 226 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~ 281 (558)
+.-..|.||+|||||+++..++....+.. +-.|. .+.-...-+.++...+.+.|
T Consensus 371 ~~~~lI~GppGTGKT~ti~~~i~~l~~~~-~~~il-v~a~tn~A~~~l~~~l~~~g 424 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVTSATIVYHLARQG-NGPVL-VCAPSNIAVDQLTEKIHQTG 424 (800)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHHHTTC-SSCEE-EEESSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHHcC-CCcEE-EEcCcHHHHHHHHHHHHHhC
Confidence 45678999999999999999987765422 22332 22333344444555554433
No 488
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=73.72 E-value=1.5 Score=43.48 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=17.8
Q ss_pred eeeeecCCCCChhHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i 247 (558)
.++|.|++|+||||++..+.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999997665
No 489
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=73.63 E-value=3 Score=39.77 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=20.1
Q ss_pred eeeeecCCCCChhHHHHHHHHHHH
Q 008638 228 KIGLFGGAGVGKTVLIMELINNVA 251 (558)
Q Consensus 228 r~gIfGg~g~GKT~L~~~~i~n~a 251 (558)
.+.+.|..|+|||||+..++...+
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 456789999999999998887665
No 490
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=73.59 E-value=1.2 Score=48.45 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=20.8
Q ss_pred cccCceeeeecCCCCChhHHHHHHH
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i 247 (558)
+..|..++|.|++|||||+|+..+.
T Consensus 38 l~~~~~VLL~GpPGtGKT~LAraLa 62 (500)
T 3nbx_X 38 ALSGESVFLLGPPGIAKSLIARRLK 62 (500)
T ss_dssp HHHTCEEEEECCSSSSHHHHHHHGG
T ss_pred HhcCCeeEeecCchHHHHHHHHHHH
Confidence 3457799999999999999997554
No 491
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=73.47 E-value=1.6 Score=43.79 Aligned_cols=22 Identities=32% Similarity=0.676 Sum_probs=19.1
Q ss_pred ceeeeecCCCCChhHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~ 248 (558)
+.++|+|.+|+|||||+..++.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999976653
No 492
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=73.46 E-value=1.6 Score=46.03 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=18.8
Q ss_pred ceeeeecCCCCChhHHHHHHHH
Q 008638 227 GKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 227 qr~gIfGg~g~GKT~L~~~~i~ 248 (558)
-|++|+|++|+|||+|+..++.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g 202 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILN 202 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHhC
Confidence 3899999999999999976543
No 493
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=73.42 E-value=1.8 Score=41.24 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=20.6
Q ss_pred cCceeeeecCCCCChhHHHHHHHHH
Q 008638 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 225 kGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
||-.+.|.|..|+||||++..+...
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4667899999999999999766543
No 494
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=73.10 E-value=2.8 Score=48.08 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=34.0
Q ss_pred CceeeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhc
Q 008638 226 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~ 281 (558)
+.-..|.||+|||||+++.+++....+..+ -.|. .+.-...-+.++...+.+.+
T Consensus 375 ~~~~lI~GppGTGKT~~i~~~i~~l~~~~~-~~IL-v~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 375 RPLSLIQGPPGTGKTVTSATIVYHLSKIHK-DRIL-VCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHHC-CCEE-EEESSHHHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHhCCC-CeEE-EEcCcHHHHHHHHHHHHhhC
Confidence 456899999999999999998877654222 2222 22333444555555565543
No 495
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=72.82 E-value=1.4 Score=46.68 Aligned_cols=19 Identities=37% Similarity=0.681 Sum_probs=16.6
Q ss_pred eeeecCCCCChhHHHHHHH
Q 008638 229 IGLFGGAGVGKTVLIMELI 247 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i 247 (558)
++|+|++|+|||||+..++
T Consensus 34 I~lvG~sGaGKSTLln~L~ 52 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLF 52 (418)
T ss_dssp EEEECCTTSSHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHh
Confidence 4999999999999997554
No 496
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=72.74 E-value=2.8 Score=39.85 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=21.7
Q ss_pred cccCceeeeecCCCCChhHHHHHHHHH
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
+-.|+.++|.|+.|+|||+++...+..
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhc
Confidence 457899999999999999877655443
No 497
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=72.73 E-value=2.2 Score=39.76 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=19.1
Q ss_pred CceeeeecCCCCChhHHHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
+-.++|.|++|+|||+++..+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999976543
No 498
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=72.73 E-value=2.2 Score=40.18 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=25.6
Q ss_pred eeeecCCCCChhHHHHHHHHHHHhhcCCEEEEEEecCC
Q 008638 229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266 (558)
Q Consensus 229 ~gIfGg~g~GKT~L~~~~i~n~a~~~~~v~V~~~iGER 266 (558)
++|.|++|+|||+++.+++.. +.-.+|+..++.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-----~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-----APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-----CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-----CCCeEEEecCCC
Confidence 689999999999999877532 233678888775
No 499
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=72.69 E-value=0.86 Score=42.24 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=19.5
Q ss_pred CceeeeecCCCCChhHHHHHHHH
Q 008638 226 GGKIGLFGGAGVGKTVLIMELIN 248 (558)
Q Consensus 226 Gqr~gIfGg~g~GKT~L~~~~i~ 248 (558)
--|++|+|.+|+|||+|+..+..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~ 51 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCN 51 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Confidence 34899999999999999976654
No 500
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=72.63 E-value=1.8 Score=49.57 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=22.5
Q ss_pred cccCceeeeecCCCCChhHHHHHHHHH
Q 008638 223 YQRGGKIGLFGGAGVGKTVLIMELINN 249 (558)
Q Consensus 223 igkGqr~gIfGg~g~GKT~L~~~~i~n 249 (558)
+.+|..++|+|++|||||+|+..+...
T Consensus 508 ~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred CCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 457888999999999999999766543
Done!