RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 008638
(558 letters)
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP;
1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB:
1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D*
1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D*
2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Length = 482
Score = 1005 bits (2600), Expect = 0.0
Identities = 380/484 (78%), Positives = 422/484 (87%), Gaps = 2/484 (0%)
Query: 74 GGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEG 133
+ + G++ VIGAVVDV+FDEGLPPIL ALEV RLVLEVAQH+GE
Sbjct: 1 AAQASPSPKAGATTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGES 60
Query: 134 VVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPI 193
VRTIAMDGTEGLVRGQ+VL++G+PI +PVG TLGRIMNVIGEPIDE+G +KT+ + I
Sbjct: 61 TVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAI 120
Query: 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 253
H EAP FVE + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKA
Sbjct: 121 HAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKA 180
Query: 254 HGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313
HGG+SVFAGVGERTREGNDLY EMIESGVI L D A SK ALVYGQMNEPPGARARV L
Sbjct: 181 HGGYSVFAGVGERTREGNDLYHEMIESGVINLKD--ATSKVALVYGQMNEPPGARARVAL 238
Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQE 373
TGLTVAE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G +QE
Sbjct: 239 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQE 298
Query: 374 RITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDST 433
RITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSR I+ELGIYPAVDPLDST
Sbjct: 299 RITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDST 358
Query: 434 SRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFL 493
SR++ P+I+G EHY+ ARGVQK+LQ+YK+LQDIIAILGMDELSE+DKLTV+RARKIQRFL
Sbjct: 359 SRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFL 418
Query: 494 SQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIA 553
SQPF VAEVFTG GK V LKE+I FQ +L G+YD LPEQ+FYMVG IEE +AKA+K+A
Sbjct: 419 SQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA 478
Query: 554 KESA 557
+E +
Sbjct: 479 EEHS 482
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Length = 498
Score = 968 bits (2504), Expect = 0.0
Identities = 323/483 (66%), Positives = 377/483 (78%), Gaps = 7/483 (1%)
Query: 82 TGKGAIGQVCQVIGAVVDVRFDEG-LPPILTALEV-----VDHSVRLVLEVAQHMGEGVV 135
K +G++ Q+IG V++V F G +P I AL V + + EV Q +G V
Sbjct: 15 LEKKNLGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRV 74
Query: 136 RTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHR 195
R +AM T+GL RG V++TG+P++VPVG TLGRI NV+GEP+D + T PIHR
Sbjct: 75 RAVAMSATDGLTRGMEVIDTGAPLSVPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHR 134
Query: 196 EAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHG 255
APAF + T+ I TGIKVV+LLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAHG
Sbjct: 135 SAPAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHG 194
Query: 256 GFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTG 315
G SVF GVGERTREGNDLY EM ESGVI A+SK ALVYGQMNEPPGAR RVGLT
Sbjct: 195 GVSVFGGVGERTREGNDLYMEMKESGVINE-QNIAESKVALVYGQMNEPPGARMRVGLTA 253
Query: 316 LTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERI 375
LT+AE+FRD QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G LQERI
Sbjct: 254 LTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERI 313
Query: 376 TTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSR 435
T+TK+GSITS+QA+YVPADDLTDPAPATTFAHLDATTVLSR ++ GIYPAVDPLDSTS
Sbjct: 314 TSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTST 373
Query: 436 MLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQ 495
ML P I+GEEHY A+ V++ LQ YK LQDIIAILG+DELSE+D+LTVARARKI+RFLSQ
Sbjct: 374 MLQPRIVGEEHYEIAQRVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQ 433
Query: 496 PFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIAKE 555
PF VAEVFTG+PGKYV L E+I FQ +L G+ D LPEQ+FY+VG I+E AKA + E
Sbjct: 434 PFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDSLPEQAFYLVGNIDEATAKAMNLEME 493
Query: 556 SAA 558
S
Sbjct: 494 SKL 496
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC
F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1
b.49.1.1 c.37.1.11
Length = 473
Score = 924 bits (2391), Expect = 0.0
Identities = 322/479 (67%), Positives = 383/479 (79%), Gaps = 17/479 (3%)
Query: 86 AIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHS-------VRLVLEVAQHMGEGVVRT 137
G+V QV+G VVDV+F+ G LP I AL++ + + L LEVA H+G+ VRT
Sbjct: 2 TRGRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRT 61
Query: 138 IAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTE-HYLPIHRE 196
IAM T+GL+RG V++TG+PI+VPVG+VTLGR+ NV+GEPID +GD+ + PIHR
Sbjct: 62 IAMASTDGLIRGMEVIDTGAPISVPVGQVTLGRVFNVLGEPIDLEGDIPADARRDPIHRP 121
Query: 197 APAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 256
AP F E ATE +IL TGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELI+N+A+ HGG
Sbjct: 122 APKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGG 181
Query: 257 FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316
SVFAGVGERTREGNDLY EM +SGVI SK A+V+GQMNEPPGAR RV LTGL
Sbjct: 182 ISVFAGVGERTREGNDLYHEMKDSGVI--------SKTAMVFGQMNEPPGARMRVALTGL 233
Query: 317 TVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERIT 376
T+AE+FRD +GQD LLFIDNIFRFTQA SEVSALLGR+PSA+GYQPTLAT++G LQERIT
Sbjct: 234 TMAEYFRDEQGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERIT 293
Query: 377 TTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRM 436
+T KGSITS+QAIYVPADD TDPAPATTF+HLDATT L R+++E+GIYPAVDPL STSR
Sbjct: 294 STAKGSITSIQAIYVPADDYTDPAPATTFSHLDATTNLERKLAEMGIYPAVDPLVSTSRA 353
Query: 437 LSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQP 496
L+P I+GEEHY AR VQ+ L+ YK LQDIIAILGMDELS++DKL V RAR+IQ FLSQ
Sbjct: 354 LAPEIVGEEHYQVARKVQQTLERYKELQDIIAILGMDELSDEDKLVVHRARRIQFFLSQN 413
Query: 497 FHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIAKE 555
FHVAE FTG PG YV +KE++ F+ +L+GKYD LPE F +VG IEEV+ KA+ + E
Sbjct: 414 FHVAEQFTGQPGSYVPVKETVRGFKEILEGKYDHLPEDRFRLVGRIEEVVEKAKAMGVE 472
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A
3j0j_A* 1um2_C
Length = 578
Score = 497 bits (1281), Expect = e-171
Identities = 113/503 (22%), Positives = 200/503 (39%), Gaps = 42/503 (8%)
Query: 80 EFTGKGAIGQVCQVIGAVVDVRFDEG-LPPILTALEVV------DHSVRLVLEVAQHMGE 132
E T +G+ G + V G L I ++ + + V H +
Sbjct: 53 EDTSGLKVGEPVVSTGLPLAVELGPGMLNGIYDGIQRPLERIREKTGIYITRGVVVHALD 112
Query: 133 GVVR---TIAMDGTEGLVRGQ---RVLNTGSPITVPVGRVTLGRIMNVIGE--------- 177
+ T + + + G V G + V GR+ V
Sbjct: 113 REKKWAWTPMVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVKEVKPAGEYTVEEPV 172
Query: 178 -PIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAG 236
+++ +LK H P+ R P + +TG++++D+L P GG + G G
Sbjct: 173 VVLEDGTELKMYHTWPVRRARPVQ-RKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFG 231
Query: 237 VGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCAL 296
GK+V L ++ V+ G GER E D+ E E K G + L
Sbjct: 232 SGKSVTQQSLAKW---SNADVVVYVGSGERGNEMTDVLVEFPELTDPKTGGPLMH-RTVL 287
Query: 297 VYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPS 356
+ N P AR G+T+AE+FRD +G V L D+ R+ +A E+S+ L +P+
Sbjct: 288 IANTSNMPVAAREASIYVGVTIAEYFRD-QGFSVALMADSTSRWAEALREISSRLEEMPA 346
Query: 357 AVGYQPTLATDLGGLQERITTT-----KKGSITSVQAIYVPADDLTDPAPATTFAHLDAT 411
GY P LA L ER ++G++T V A+ P D+++P +T + A
Sbjct: 347 EEGYPPYLAARLAAFYERAGKVITLGGEEGAVTIVGAVSPPGGDMSEPVTQSTLRIVGAF 406
Query: 412 TVLSRQISELGIYPAVDPLDSTSRMLSP------HILGEEHYNTARGVQKVLQNYKNLQD 465
L ++ +PA++ S S S + E++ + ++LQ LQ+
Sbjct: 407 WRLDASLAFRRHFPAINWNGSYSLFTSALDPWYRENVAEDYPELRDAISELLQREAGLQE 466
Query: 466 IIAILGMDELSEDDKLTVARARKIQR-FLSQ-PFHVAEVFTGAPGKYVELKESIASFQGV 523
I+ ++G D L + ++L + R I+ FL Q +H + ++ Y +K +A ++
Sbjct: 467 IVQLVGPDALQDAERLVIEVGRIIREDFLQQNAYHEVDAYSSMKKAYGIMKMILAFYKEA 526
Query: 524 LDGKYDDLPEQSFYMVGGIEEVI 546
+ + +E +
Sbjct: 527 EAAIKRGVSIDEILQLPVLERIG 549
Score = 49.3 bits (118), Expect = 2e-06
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 88 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
G + ++ G V + G + +V + LV E+ + G+ + D T GL
Sbjct: 4 GVIQKIAGPAVIAKGMLG-ARMYDISKVGEE--GLVGEIIRLDGDTAFVQVYED-TSGLK 59
Query: 148 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDE 181
G+ V++TG P+ V +G L I + I P++
Sbjct: 60 VGEPVVSTGLPLAVELGPGMLNGIYDGIQRPLER 93
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A
3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A
3sdz_A
Length = 588
Score = 484 bits (1247), Expect = e-166
Identities = 118/519 (22%), Positives = 198/519 (38%), Gaps = 58/519 (11%)
Query: 80 EFTGKGAIGQVCQVIGAVVDVRFDEG-LPPILTALEV---------------------VD 117
E T G+ GA + V L I ++ +
Sbjct: 54 EETAGVRPGEPVVGTGASLSVELGPRLLTSIYDGIQRPLEVIREKTGDFIARGVTAPALP 113
Query: 118 HSVRLVLEVAQHMGEGVVR--TIAMDGTEGLVRGQRVLNTGSPITV----PVGRVTLGRI 171
+ +G+ VV I ++ + ++ G + G T+ +
Sbjct: 114 RDKKWHFIPKAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEV 173
Query: 172 MNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGL 231
+ + P E +LK P+ + P + E+ + L+TG +V+D P +GG +
Sbjct: 174 IAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQAKGGTAAI 232
Query: 232 FGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQAD 291
G AG GKTV +L + ++ G GER E D+ E + K G +
Sbjct: 233 PGPAGSGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLME 289
Query: 292 SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALL 351
+ L+ N P AR TG+T+AE+FRD G DV L D+ R+ +A E+S L
Sbjct: 290 -RTVLIANTSNMPVAAREASIYTGITIAEYFRD-MGYDVALMADSTSRWAEALREISGRL 347
Query: 352 GRIPSAVGYQPTLATDLGGLQERI-------TTTKKGSITSVQAIYVPADDLTDPAPATT 404
+P GY LA+ L ER + + GS++ + A+ P D ++P T
Sbjct: 348 EEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNT 407
Query: 405 FAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSP------HILGEEHYNTARGVQKVLQ 458
+ L ++ +PA++ L S S + + E +LQ
Sbjct: 408 LRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQ 467
Query: 459 NYKNLQDIIAILGMDELSEDDKLTVARARKIQR-FLSQPFHVAEVFTGAPGKYVELKESI 517
LQ+I+ I+G D L E ++ + AR ++ +L Q P K V + +
Sbjct: 468 KESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVL 527
Query: 518 ASFQGVLDGKYDDLPEQSFYMVGGIEEVIAKA--EKIAK 554
+F YD E V +EE+ E+I +
Sbjct: 528 LNF-------YDKTMEAINRGV-PLEEIAKLPVREEIGR 558
Score = 67.1 bits (164), Expect = 7e-12
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 88 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
G++ +V G +V +G + + V + L+ E+ + G+ V + + T G+
Sbjct: 5 GRIIRVTGPLVVADGMKG-AKMYEVVRVGEL--GLIGEIIRLEGDKAVIQVYEE-TAGVR 60
Query: 148 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 199
G+ V+ TG+ ++V +G L I + I P++ + KT ++ APA
Sbjct: 61 PGEPVVGTGASLSVELGPRLLTSIYDGIQRPLEVIRE-KTGDFIARGVTAPA 111
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D
3j0j_D*
Length = 464
Score = 340 bits (873), Expect = e-112
Identities = 107/433 (24%), Positives = 182/433 (42%), Gaps = 34/433 (7%)
Query: 88 GQVCQVIGAVVDVRFDEGLPPI--LTALEVVDHSVRL--VLEVAQHMGEGVVRTIAMDGT 143
+ + G ++ V + + ++ VR V+EV+ E + T
Sbjct: 9 TGITYISGPLLFVENAKD-LAYGAIVDIKDGTGRVRGGQVIEVS----EEYAVIQVFEET 63
Query: 144 EGLVRGQ-RVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVE 202
GL V + V + LGR N IG+PID + E LPI V
Sbjct: 64 TGLDLATTSVSLVEDVARLGVSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVA 123
Query: 203 QATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA----------K 252
+ +Q + TGI +D++ RG K+ +F G+G+ + ++ K
Sbjct: 124 RRKPEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEK 183
Query: 253 AHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVG 312
VFA +G RE + +E +G + + L + ++P R
Sbjct: 184 EEPFAVVFAAMGITQRELSYFIQEFERTGALS--------RSVLFLNKADDPTIERILTP 235
Query: 313 LTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQ 372
LTVAE+ VL+ + ++ +++A E+ A IP GY + TDL +
Sbjct: 236 RMALTVAEYLAFEHDYHVLVILTDMTNYSEALREIGAAREEIPGRRGYPGYMYTDLATIY 295
Query: 373 ER--ITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPL 430
ER + KKGS+T + + +P DD T P P T + LSR++ GIYP +DPL
Sbjct: 296 ERAGVVEGKKGSVTQIPILSMPDDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPL 355
Query: 431 DSTSRMLSPHI----LGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARA 486
S SR+++ + E+H + + N +++ ++AI+G D L+E+D+ + A
Sbjct: 356 PSLSRLMNNGVGKGKTREDHKQVSDQLYSAYANGVDIRKLVAIIGEDALTENDRRYLQFA 415
Query: 487 RKIQRFLSQPFHV 499
+RF
Sbjct: 416 DAFERFFINQGQQ 428
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase,
A1AO, ATP synthesis, hydrogen ION transport, ION
transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A*
3b2q_A* 2rkw_A* 3eiu_A*
Length = 469
Score = 248 bits (636), Expect = 2e-76
Identities = 100/431 (23%), Positives = 185/431 (42%), Gaps = 37/431 (8%)
Query: 88 GQVCQVIGAVVDVRFDEGLPPI----LTALEVVDHSVRL--VLEVAQHMGEGVVRTIAM- 140
+ Q+ G ++ V E P+ + +++ D +VR VL+ + +
Sbjct: 15 KTITQIAGPLIFV---EKTEPVGYNEIVNIKMGDGTVRRGQVLDSSAD------IVVVQV 65
Query: 141 -DGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 199
+GT GL + V+ TG + +P LGRI++ GEP D + + L I+ A
Sbjct: 66 FEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMN 125
Query: 200 FVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS- 258
+ + + TGI +D RG K+ +F +G+ + +++ + +
Sbjct: 126 PYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAF 185
Query: 259 --VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316
VFA +G E + ++G ++ + + ++P R L
Sbjct: 186 AVVFAAMGITNEEAQYFMSDFEKTGALE--------RAVVFLNLADDPAVERIVTPRMAL 237
Query: 317 TVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQER-- 374
T AE+ G VL+ + +I + +A ++ A +P GY + TDL L ER
Sbjct: 238 TAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAG 297
Query: 375 ITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTS 434
I KGS+T + + +P DD+T P P + + V++R++ GIYP ++ L S S
Sbjct: 298 IVKGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLS 357
Query: 435 RMLSPHILGE-----EHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARK- 488
R L +G +H + + ++L+ ++AI+G + LSE D + A
Sbjct: 358 R-LMNSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLF 416
Query: 489 IQRFLSQPFHV 499
+F+ Q +
Sbjct: 417 EDKFVRQGRNE 427
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Length = 347
Score = 222 bits (569), Expect = 4e-68
Identities = 99/344 (28%), Positives = 167/344 (48%), Gaps = 18/344 (5%)
Query: 158 PITVPVGRVTLGRIMNVIGEPIDEKGDL-KTEHYLPIHREAPAFVEQATEQQILVTGIKV 216
+ VG LGR+++ IG P++ ++ E P + + Q + G++
Sbjct: 2 SHKIRVGDALLGRLIDGIGRPMESNIVAPYLPFERSLYAEPPDPLLRQVIDQPFILGVRA 61
Query: 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYRE 276
+D L G +IG+F G+GVGK+ L+ + N A V A +GER RE E
Sbjct: 62 IDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNG---ASADIIVLALIGERGRE----VNE 114
Query: 277 MIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDN 336
+ L SKC LV + P R + T T+AE+FRD +G++VLL +D+
Sbjct: 115 FLA----LLPQ-STLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRD-QGKNVLLMMDS 168
Query: 337 IFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDL 396
+ R+ +A +V G G+ P++ + L L ER KGSIT++ + + +D++
Sbjct: 169 VTRYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNV 228
Query: 397 TDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKV 456
DP + LD VL+R+++E +PA+D S SR + +++ EH A +K+
Sbjct: 229 NDPIGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASR-VMHNVVTSEHLRAAAECKKL 287
Query: 457 LQNYKNLQDIIAILGMDELSEDDKL--TVARARKIQRFLSQPFH 498
+ YKN + +I I G + +D + + + IQ F+ Q
Sbjct: 288 IATYKNPELLIRI-GEYTMGQDPEADKAIKNRKLIQNFIQQSTK 330
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 223 bits (571), Expect = 2e-67
Identities = 108/411 (26%), Positives = 187/411 (45%), Gaps = 27/411 (6%)
Query: 94 IGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVL 153
+GA + +G EVV + + + + EG++ G R
Sbjct: 30 LGATCIIERQDGPETKEVESEVVGFNGQRLFLMPLEEVEGILP-----GARVYARNGHGD 84
Query: 154 NTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTG 213
S +P+G LGR+++ G+P+D T + +++ + +L TG
Sbjct: 85 GLQSGKQLPLGPALLGRVLDGGGKPLDGLPAPDTLETGALITPPFNPLQRTPIEHVLDTG 144
Query: 214 IKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDL 273
++ ++ L RG ++GLF G+GVGK+VL+ + V +GER RE
Sbjct: 145 VRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARY---TRADVIVVGLIGERGRE---- 197
Query: 274 YREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLF 333
++ IE+ LG ++ ++ + P R + +AE FRD GQ VLL
Sbjct: 198 VKDFIEN---ILGP-DGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRD-RGQHVLLI 252
Query: 334 IDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQER--ITTTKKGSITSVQAIYV 391
+D++ R+ A E++ +G P+ GY P++ L L ER GSIT+ +
Sbjct: 253 MDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLT 312
Query: 392 PADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTAR 451
DD DP + A LD VLSR+++E G YPA+D S SR + ++ E+HY R
Sbjct: 313 EGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAM-TALITEQHYARVR 371
Query: 452 GVQKVLQNYKNLQDIIAI----LGMDELSEDDKLTVARARKIQRFLSQPFH 498
+++L +++ +D++++ G D DK + +++ FL Q
Sbjct: 372 LFKQLLSSFQRNRDLVSVGAYAKGSDP--MLDK-AITLWPQLEAFLQQGIF 419
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase,
single analysis, thermoalkaliphilic, hydrolase; 3.06A
{Bacillus SP} PDB: 1sky_B
Length = 502
Score = 92.0 bits (229), Expect = 7e-20
Identities = 88/334 (26%), Positives = 145/334 (43%), Gaps = 54/334 (16%)
Query: 126 VAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDL 185
+AQ++ E V + + + G +V TG + VPVG LGR++N +G+P+D +G +
Sbjct: 62 MAQNLEEDNVGVVILGPYTEIREGTQVKRTGRIMEVPVGEALLGRVVNPLGQPLDGRGPI 121
Query: 186 KTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME 245
+T Y PI AP +++ + + L TGIK +D + P RG + + G GKT + ++
Sbjct: 122 ETAEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTIAID 181
Query: 246 LINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPP 305
I N K ++ +G++ + + V L A +V +EP
Sbjct: 182 TIIN-QKGQDVICIYVAIGQK--------QSTVAGVVETLRQHDALDYTIVVTASASEPA 232
Query: 306 GARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQP--- 362
G + E+F +G+ L+ D++ + A E+S LL R P Y P
Sbjct: 233 PLLYLAPYAGCAMGEYFMY-KGKHALVVYDDLSKQAAAYRELSLLLRRPPGREAY-PGDV 290
Query: 363 ------------TLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDA 410
L+ + GG GS+T++ I A D++ P
Sbjct: 291 FYLHSRLLERAAKLSDEKGG----------GSLTALPFIETQAGDVSAYIP--------- 331
Query: 411 TTVLS---RQI---SEL---GIYPAVDPLDSTSR 435
T V+S QI S+L G+ PAV+ S SR
Sbjct: 332 TNVISITDGQIFLESDLFYSGVRPAVNVGISVSR 365
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima
MSB8}
Length = 515
Score = 91.6 bits (228), Expect = 8e-20
Identities = 95/373 (25%), Positives = 156/373 (41%), Gaps = 58/373 (15%)
Query: 87 IGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGL 146
G+V QV + GL ++ E+V+ V VA ++ E V I + + +
Sbjct: 40 TGKVIQVGDGIARA---YGLNKVM-VSELVEFVETGVKGVAFNLEEDNVGIIILGEYKDI 95
Query: 147 VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATE 206
G V I VPVG LGR++N +GEP+D KG + +++ PI +AP + +
Sbjct: 96 KEGHTVRRLKRIIEVPVGEELLGRVVNPLGEPLDGKGPINAKNFRPIEIKAPGVIYRKPV 155
Query: 207 QQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266
L TGIK +D + P RG + + G GKT + ++ I N K G + ++ +G++
Sbjct: 156 DTPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIIN-QKGQGVYCIYVAIGQK 214
Query: 267 TREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAE 326
+ I + KL A +V ++P + G + E+F
Sbjct: 215 --------KSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPYAGCAMGEYFAY-S 265
Query: 327 GQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQP---------------TLATDLGGL 371
G+D L+ D++ + A ++S L+ R P Y P L LGG
Sbjct: 266 GRDALVVYDDLSKHAVAYRQLSLLMRRPPGREAY-PGDIFYLHSRLLERAVRLNDKLGG- 323
Query: 372 QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLS---RQI---SEL---G 422
GS+T++ + A+D++ P T V+S QI L G
Sbjct: 324 ---------GSLTALPIVETQANDISAYIP---------TNVISITDGQIYLEPGLFYAG 365
Query: 423 IYPAVDPLDSTSR 435
PA++ S SR
Sbjct: 366 QRPAINVGLSVSR 378
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Length = 507
Score = 90.8 bits (226), Expect = 1e-19
Identities = 77/334 (23%), Positives = 134/334 (40%), Gaps = 54/334 (16%)
Query: 126 VAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDL 185
+A ++ V + M + G V TG +PV LGR++N + +PID +G++
Sbjct: 63 IALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEI 122
Query: 186 KTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME 245
I AP + + + + L TG+ +D + P RG + + G GKT + +
Sbjct: 123 TASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVATD 182
Query: 246 LINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPP 305
I N + V+ +G++ + V ++ A +V + P
Sbjct: 183 TILN-QQGQNVICVYVAIGQK--------ASSVAQVVTNFQERGAMEYTIVVAETADSPA 233
Query: 306 GARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQP--- 362
+ TG +AE+F + L+ D++ + QA ++S LL R P Y P
Sbjct: 234 TLQYLAPYTGAALAEYFMY-RERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAY-PGDV 291
Query: 363 ------------TLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDA 410
L++ LG GS+T++ + A D++ P
Sbjct: 292 FYLHSRLLERAAKLSSLLGE----------GSMTALPIVETQAGDVSAYIP--------- 332
Query: 411 TTVLS---RQI---SEL---GIYPAVDPLDSTSR 435
T V+S QI ++L GI PA++ S SR
Sbjct: 333 TNVISITDGQIFLSADLFNAGIRPAINVGISVSR 366
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A*
1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A*
2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Length = 510
Score = 87.7 bits (218), Expect = 2e-18
Identities = 60/239 (25%), Positives = 108/239 (45%), Gaps = 20/239 (8%)
Query: 126 VAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDL 185
++ ++ V + + + G V TG+ + VPVG LGR+++ +G ID KG +
Sbjct: 62 MSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPI 121
Query: 186 KTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME 245
++ + +AP + + + ++ + TGIK VD L P RG + + G GKT + ++
Sbjct: 122 GSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAID 181
Query: 246 LINNVAKAHGGFSVFAGVGERTREGNDLY---------REMIESGVIKLGDKQADSKCAL 296
I N + + G T E LY R + V +L D A +
Sbjct: 182 TIINQKRFNDG----------TDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIV 231
Query: 297 VYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIP 355
V ++ + +G ++ E+FRD G+ L+ D++ + A ++S LL R P
Sbjct: 232 VSATASDAAPLQYLAPYSGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPP 289
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase,
hydrolase-transport PROT complex; HET: ANP ADP; 3.26A
{Escherichia coli DH1} PDB: 2a7u_A
Length = 513
Score = 87.3 bits (217), Expect = 2e-18
Identities = 67/230 (29%), Positives = 109/230 (47%), Gaps = 10/230 (4%)
Query: 126 VAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDL 185
+A ++ V + M L G +V TG + VPVGR LGR++N +G PID KG L
Sbjct: 62 IALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGPL 121
Query: 186 KTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME 245
+ + + AP +E+ + Q + TG K VD + P RG + + G GKT L ++
Sbjct: 122 DHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAID 181
Query: 246 LINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPP 305
I N + G ++ +G++ I + V KL + A + +V +E
Sbjct: 182 AIIN-QRDSGIKCIYVAIGQK--------ASTISNVVRKLEEHGALANTIVVVATASESA 232
Query: 306 GARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIP 355
+ G + E+FRD G+D L+ D++ + A ++S LL R P
Sbjct: 233 ALQYLAPYAGCAMGEYFRD-RGEDALIIYDDLSKQAVAYRQISLLLRRPP 281
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 85.3 bits (210), Expect = 2e-17
Identities = 71/497 (14%), Positives = 146/497 (29%), Gaps = 150/497 (30%)
Query: 99 DVRFDEGLP-PILTALEVVDH---------SVRLVLEVAQHMGEGVVRTIAMDGTEGLVR 148
D + + +P IL+ E +DH + E +V
Sbjct: 34 DCKDVQDMPKSILSK-EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV------------- 79
Query: 149 GQRVLNTGSPITVPVGRVTLGRIMNVI-GEPIDEKGDLKTEHYL----PIHREAPAFVEQ 203
Q+ + V R+ +M+ I E T Y+ ++ + F +
Sbjct: 80 -QKFVEE-------VLRINYKFLMSPIKTEQRQPSMM--TRMYIEQRDRLYNDNQVFAKY 129
Query: 204 ATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA-KAHGGFSVF-A 261
+ ++ L + + + G G GKT + +++ + + F +F
Sbjct: 130 NVSRLQPYLKLR--QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 262 GVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEH 321
+ L EM++ + ++ D S+ + + R+ +
Sbjct: 188 NLKNCNSPETVL--EMLQKLLYQI-DPNWTSRS-------DHSSNIKLRIHSIQAELRRL 237
Query: 322 FRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQ-PTLATDLGGLQERITTTKK 380
+ ++ LL + N+ N++ +A L +TT K
Sbjct: 238 LKSKPYENCLLVLLNV-----QNAKAW-------NAFNLSCKIL----------LTTRFK 275
Query: 381 GSITSVQAI---YVPADD----LTDPAPATTFAHLDATTVLSRQISELGIYP----AVDP 429
+ A ++ D LT + L + +L P +P
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-----KYLDCRPQDL---PREVLTTNP 327
Query: 430 LDSTSRMLSPHILGE---EHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARA 486
LS I+ E + T N+K++ DKLT
Sbjct: 328 R-----RLS--IIAESIRDGLAT-------WDNWKHVN-------------CDKLT---- 356
Query: 487 RKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDD--LPEQSFYMV---GG 541
I+ L V P +Y ++ + ++ F +P ++
Sbjct: 357 TIIESSL-------NVLE--PAEYRKMFDRLSVFP-------PSAHIPTILLSLIWFDVI 400
Query: 542 IEEVIAKAEKIAKESAA 558
+V+ K+ K S
Sbjct: 401 KSDVMVVVNKLHKYSLV 417
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.4 bits (138), Expect = 1e-08
Identities = 94/636 (14%), Positives = 169/636 (26%), Gaps = 248/636 (38%)
Query: 23 SLSNSSV-FS---PAATRRASPYGHLLSRVSE--YATSAAATAPPAQ--TPKSDVKKGGG 74
+LS+ S+ P + + S++ E T A P + +
Sbjct: 10 TLSHGSLEHVLLVPT-----ASFFIA-SQLQEQFNKILPEPTEGFAADDEPTTPAE---- 59
Query: 75 GKITDEFTG-------KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVA 127
+ +F G +GQ QV+ + F+ L ++ H++
Sbjct: 60 --LVGKFLGYVSSLVEPSKVGQFDQVLNLCLT-EFENC---YLEGNDI--HAL------- 104
Query: 128 QHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKT 187
+ + LV+ + ++ + + + P D+
Sbjct: 105 -------AAKLLQENDTTLVKTKELI-----------KNYI-TARIMAKRPFDK------ 139
Query: 188 EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247
+ A E L+A +FGG G EL
Sbjct: 140 -------KSNSALFRAVGEGN--------AQLVA---------IFGGQGNTDDYF-EEL- 173
Query: 248 NNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDK-----QADSKCALVYGQMN 302
R+ Y ++ + + + V+ Q
Sbjct: 174 --------------------RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ-- 211
Query: 303 EPPGARARVGLTGLTVAEHFRDAE---GQDVLLFIDNIFRFTQANSEVSA-LLG------ 352
GL + E + +D L + +S L+G
Sbjct: 212 ------------GLNILEWLENPSNTPDKDYL-----------LSIPISCPLIGVIQLAH 248
Query: 353 --RIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDA 410
+G+ P G L+ + KG+ Q + V A A ++
Sbjct: 249 YVVTAKLLGFTP------GELRSYL----KGATGHSQGL-VTA---VAIAETDSWESFFV 294
Query: 411 TTVLSRQIS-ELGI-----YP--AVDPL---DST-------SRMLS-------------- 438
+ + + +G+ YP ++ P DS S MLS
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354
Query: 439 ---PHILGEEH-----YNTAR-----GVQKVLQNYK-NLQDIIAILGMD----ELSEDDK 480
H+ + N A+ G + L L+ A G+D SE
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE--- 411
Query: 481 LTVARARKIQ---RFL--SQPFH-------VAEVFTGAPGKYVELKES---IASFQGVLD 525
RK++ RFL + PFH + V I + D
Sbjct: 412 ------RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD-TFD 464
Query: 526 GKYDDLPEQSFYMVGGIEEVIAKA----EKIAKESA 557
G DL S + I + I + E + A
Sbjct: 465 GS--DLRVLSGSISERIVDCIIRLPVKWETTTQFKA 498
Score = 47.7 bits (113), Expect = 1e-05
Identities = 66/386 (17%), Positives = 129/386 (33%), Gaps = 101/386 (26%)
Query: 2 ASRRLLSSLLRSSVRRSPSKSS-------LSNSSVFSPAATRRASPY---GHLLSRVSEY 51
S LS L+R+++ + L N S + P + +++ Y
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY 249
Query: 52 ATSAAATAPPAQTPKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVV------DVRFDEG 105
+A TP G++ KGA G ++ AV F
Sbjct: 250 VVTAKLLG---FTP---------GELRSYL--KGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 106 LPPILTAL--------EVVDHSV---RLVLEVAQHMGEGV------VRTIAMDGTEGLVR 148
+ +T L E ++ ++ + ++ EGV + + + + V
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN-NEGVPSPMLSISNLTQEQVQDYVN 354
Query: 149 GQRVLNTGSPITVPVGRVTL--GRIMNVI-GEPIDEKGDLKTEHYLPIHRE-APAFVEQA 204
N+ P V ++L G V+ G P G L + + AP+ ++Q+
Sbjct: 355 K---TNSHLPAGKQV-EISLVNGAKNLVVSGPPQSLYG-LNLT----LRKAKAPSGLDQS 405
Query: 205 T---EQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHG---GFS 258
++ L + + + +P+ L A ++ +L+ N +
Sbjct: 406 RIPFSERKLKFSNRFLPVASPFHS----HLLVPA---SDLINKDLVKNNVSFNAKDIQIP 458
Query: 259 VFAGVGERTREGNDLYREMIESGVIKLGD------------KQADSKCALVYGQMNEPPG 306
V+ T +G+DL R + S ++ D Q + L +G PG
Sbjct: 459 VYD-----TFDGSDL-RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG-----PG 507
Query: 307 ARARVGLTGLTVAEHFRDAEGQDVLL 332
+ +G LT +D G V++
Sbjct: 508 GASGLG--VLT--HRNKDGTGVRVIV 529
Score = 30.8 bits (69), Expect = 1.5
Identities = 20/120 (16%), Positives = 41/120 (34%), Gaps = 41/120 (34%)
Query: 443 GEEHYNTARGVQKV--------LQNYK-NLQDIIAILGMDELSEDDKLTVARARKIQRFL 493
G + Y T++ Q V Y ++ DI+ +
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIV-------------------------I 1666
Query: 494 SQPFHVAEVFTGAPGKYVELKESIASFQGVLDGK------YDDLPEQ-SFYMVGGIEEVI 546
+ P ++ F G GK + S F+ ++DGK + ++ E + Y + ++
Sbjct: 1667 NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL 1726
>1pyv_A ATP synthase beta chain, mitochondrial precursor; hydrolase; NMR
{Nicotiana plumbaginifolia} SCOP: j.36.4.1
Length = 54
Score = 41.8 bits (97), Expect = 1e-05
Identities = 28/54 (51%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 1 MASRRLLSSLLRSSVRR--SPSKSSLSNSSVFSPA-ATRRASPYGHLLSRVSEY 51
MASRRLL+SLLR S +R SL NS S + A+ RASP G LL+R +Y
Sbjct: 1 MASRRLLASLLRQSAQRGGGLISRSLGNSIPKSASRASSRASPKGFLLNRAVQY 54
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.8 bits (89), Expect = 0.001
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 11/36 (30%)
Query: 379 KKGSITSVQA---IYVPADDLTDPAPATTFAHLDAT 411
+K ++ +QA +Y D APA A + AT
Sbjct: 18 EKQALKKLQASLKLYAD-----DSAPA--LA-IKAT 45
Score = 33.0 bits (74), Expect = 0.11
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 7/30 (23%)
Query: 181 EKGDLKT-EH----YLPIHREAPAFVEQAT 205
EK LK + Y APA +AT
Sbjct: 18 EKQALKKLQASLKLYAD--DSAPALAIKAT 45
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 38.8 bits (90), Expect = 0.002
Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 4/139 (2%)
Query: 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGD 287
KI + G GVGKT L+ +++ + K GF T++ E
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61
Query: 288 KQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEV 347
K SK + G + + L A + + V++ ID I + + +
Sbjct: 62 KFFTSKKLV--GSYGVNVQYFEELAIPILERAYREAKKDRRKVII-IDEIGKMELFSKKF 118
Query: 348 SALLGRIPSAVGYQPTLAT 366
L+ +I +AT
Sbjct: 119 RDLVRQIMHDPN-VNVVAT 136
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease,
nucleotide excision repair; 2.8A {Aeropyrum pernix}
SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Length = 219
Score = 36.4 bits (83), Expect = 0.014
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 423 IYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLT 482
I P S R +IL R +++L+ + +L+ E+S+ + +
Sbjct: 145 IVIHKKPRLSDVREWQLYILQSFPGIGRRTAERILERFGSLERFFT-ASKAEISKVEGIG 203
Query: 483 VARARKIQRFLSQPF 497
RA +I++ L P+
Sbjct: 204 EKRAEEIKKILMTPY 218
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 33.5 bits (76), Expect = 0.12
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 16/69 (23%)
Query: 44 LLSRVSEYATSAAATAPPAQTPKSDVK------KGGGGKITDEFTGKGAIGQVCQVIGAV 97
+++R S + P ++ K KI + F+ +G + VC + G V
Sbjct: 1 MMTRESI------DKRAGRRGPNLNIVLTCPECKVYPPKIVERFS-EGDV--VCALCGLV 51
Query: 98 VDVRF-DEG 105
+ + D
Sbjct: 52 LSDKLVDTR 60
>2j5l_A Apical membrane antigen 1; malaria vaccine candidate, apical
membrane antigen 1, hypothetical protein, immunoglobulin
domain; 2.9A {Plasmodium falciparum} SCOP: g.61.1.1 PDB:
1hn6_A
Length = 581
Score = 34.2 bits (77), Expect = 0.14
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 8/106 (7%)
Query: 178 PIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVD--LLAPYQRGGKIGLFGGA 235
PI+E + E+ P+H+E E + E + + +D P + +
Sbjct: 8 PINEHREHPKEYEYPLHQEHTYQQEDSGEDENTLQHAYPIDHEGAEPAPQEQNLFSSIEI 67
Query: 236 GVGKTVLIMELIN-----NVAKAHGGFSVFAGVGERTREGNDLYRE 276
+ ++ + HG + +GE YR
Sbjct: 68 VERSNYMGNPWTEYMAKYDIEEVHGS-GIRVDLGEDAEVAGTQYRL 112
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 32.6 bits (74), Expect = 0.31
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVF 260
+ + G G GK+VL+ EL +
Sbjct: 56 LLVNGATGTGKSVLLRELAYTGLLRGDRMVIV 87
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 32.3 bits (73), Expect = 0.46
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Query: 196 EAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 254
F + Q+ + + A ++ + + G AG G T L +I +
Sbjct: 19 SHMTFDDLTEGQKNAFNIV----MKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTG 73
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 32.0 bits (72), Expect = 0.49
Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 7/113 (6%)
Query: 231 LFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQA 290
+ G GK+ +I IN + + + D E ++ + KL +
Sbjct: 35 VLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLE-LQKEINKLVKRLP 93
Query: 291 DSKCALVYGQMNEPPGARARVGLTG------LTVAEHFRDAEGQDVLLFIDNI 337
AL Q G + + E F A +V++ +D
Sbjct: 94 SLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEA 146
>3mtk_A Diguanylate cyclase/phosphodiesterase; structural genomics, PSI-2,
protein structure initiative; 2.24A
{Caldicellulosiruptor saccharolyticus}
Length = 178
Score = 31.3 bits (72), Expect = 0.50
Identities = 5/49 (10%), Positives = 14/49 (28%), Gaps = 8/49 (16%)
Query: 464 QDIIAILGMDE----LSEDDKLTVARARKIQRFLSQPFHVA--EVFTGA 506
+ +G D ++ ++ L P++V +
Sbjct: 77 GNKAFKIGFDRFAIICKSENISDFIE--RMLSQLLLPYNVNGNLIRVNF 123
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 32.1 bits (73), Expect = 0.54
Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 29/119 (24%)
Query: 229 IGLFGGAGVGKTVLIMELINN---VAKAHGGFSVFAGVGERTREG-----NDLYREMIES 280
+ ++G AG GK+VL E + + + G + +G++ + G +L
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCM----- 204
Query: 281 GVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFR 339
+ D + + A+ R L L + +H R LL +D+++
Sbjct: 205 --------RLDQEESFSQRLPLNIEEAKDR--LRVLMLRKHPR------SLLILDDVWD 247
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 31.6 bits (71), Expect = 0.57
Identities = 16/118 (13%), Positives = 34/118 (28%), Gaps = 5/118 (4%)
Query: 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREM 277
L + L G VGK+ L+ +N G + G+ E+
Sbjct: 23 KLEESLENYPLTLLLGIRRVGKSSLLRAFLNE----RPGILIDC-RELYAERGHITREEL 77
Query: 278 IESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFID 335
I+ + Q + + ++ L + + E + ++ D
Sbjct: 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFD 135
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.50A {Thermotoga maritima}
SCOP: c.129.1.1
Length = 195
Score = 30.8 bits (70), Expect = 0.78
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSV 259
++G +F G G +MEL++ + GG V
Sbjct: 56 KKG--YLVFNGGRDG----VMELVSQGVREAGGTVV 85
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair,
N1-methyladenine, N3-methylcytosine, hyperthermophiles,
hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus}
PDB: 2jhj_A
Length = 295
Score = 31.3 bits (71), Expect = 0.80
Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 16/92 (17%)
Query: 126 VAQHMGEGVVRTIAMDGTEGLVR---GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEK 182
+ G G ++M EG+ + Q+ I+ V +I+ G+ ++
Sbjct: 102 KNRFYGFGRAGLMSMSVFEGIAKAIIQQQ-------ISFVVAEKLAAKIVGRFGDEVEWN 154
Query: 183 GDLKTEHYLPIHREAPAFVEQATEQQILVTGI 214
G + P + +A + + G+
Sbjct: 155 G--LKFYGFP----TQEAILKAGVEGLRECGL 180
>3pjx_A Cyclic dimeric GMP binding protein; ggdef-EAL tandem domain,
C-DI-GMP receptor, lyase; 2.00A {Pseudomonas
fluorescens} PDB: 3pjw_A 3pju_A* 3pjt_A* 3pfm_A
Length = 430
Score = 30.9 bits (71), Expect = 1.0
Identities = 9/62 (14%), Positives = 23/62 (37%), Gaps = 11/62 (17%)
Query: 454 QKVLQNYKNLQDIIAILGMDE-------LSEDDKLTVARARKIQRFLSQPFHVA--EVFT 504
+ Y Q+++ + E ++ ++ L +A+ + LS + +V
Sbjct: 83 SRECAKYPETQNLVTRIRGGEFAVLAPGMTREEALQLAQ--SLDSALSSLYATGATDVAA 140
Query: 505 GA 506
A
Sbjct: 141 VA 142
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 30.4 bits (68), Expect = 1.7
Identities = 22/127 (17%), Positives = 48/127 (37%), Gaps = 6/127 (4%)
Query: 215 KVVDLLAPYQRGGKIG---LFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV-GERTREG 270
K+ +LAP R K ++G G GKT ++ +++ + K G + +
Sbjct: 31 KIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTP 90
Query: 271 NDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDV 330
+ +++ES + + A +Y ++ + + L + F D+
Sbjct: 91 YRVLADLLES--LDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDI 148
Query: 331 LLFIDNI 337
L + I
Sbjct: 149 LYKLSRI 155
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 29.7 bits (66), Expect = 1.9
Identities = 32/168 (19%), Positives = 54/168 (32%), Gaps = 11/168 (6%)
Query: 228 KIGLFGGAGVGKTVLIMELINNVAKAH---GGFSVFAGVGERTREGNDLYREMIESGVI- 283
+ L G GVGKT LI + + + GF R G D+ G +
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLS 62
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQA 343
++G + K GQ + ++ L L A+ + + ID I +
Sbjct: 63 RVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADC--SSGPGQRVCVIDEIGKMELF 120
Query: 344 NSEVSALLGRI-----PSAVGYQPTLATDLGGLQERITTTKKGSITSV 386
+ + + +G P L E I K + +V
Sbjct: 121 SQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNV 168
>1pm3_A MTH1895; unknown function, structural genomics, PSI, protein
structure initiative; 3.15A
{Methanothermobacterthermautotrophicus} SCOP: b.41.1.2
Length = 97
Score = 28.5 bits (63), Expect = 1.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 69 VKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFD 103
V +G +I +E GK + +VIG V DV D
Sbjct: 15 VPRGSHMRIVEEMVGKEVLDSSAKVIGKVKDVEVD 49
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 30.2 bits (67), Expect = 2.2
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 312 GLTGLTVAEHFRDAEGQDVLLF 333
G TGL A+ +G ++
Sbjct: 19 GPTGLGAAKRLNQIDGPSWMIV 40
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 29.9 bits (67), Expect = 2.3
Identities = 24/153 (15%), Positives = 51/153 (33%), Gaps = 23/153 (15%)
Query: 105 GLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164
G ++T + ++ V + + + V + + R +R L
Sbjct: 175 GATTVMTTERIEEYGPIARYGVEEFVSDNV---VILRNVLEGERRRRTL----------- 220
Query: 165 RVTLGRIMNVIGEPID--EKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVD-LLA 221
I+ + G E T+H + I + Q + + +G+ +D +
Sbjct: 221 -----EILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDEMCG 275
Query: 222 P-YQRGGKIGLFGGAGVGKTVLIMELINNVAKA 253
+ + I G G GKT+L+ + N
Sbjct: 276 GGFFKDSIILATGATGTGKTLLVSRFVENACAN 308
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 29.5 bits (66), Expect = 2.4
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Query: 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTRE--------GNDLYRE 276
G + L GG G GKT + I A+ +G VF + ER R+ G D +
Sbjct: 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDF-EK 87
Query: 277 MIESGVIKLGD 287
+ G I + D
Sbjct: 88 YEKEGKIAIVD 98
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 30.0 bits (67), Expect = 2.4
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 229 IGLFGGAGVGKTVLIMELINNVAKAHGGF 257
+ L G AG GK+V+ + ++ + G
Sbjct: 155 LFLHGRAGSGKSVIASQALSKSDQLIGIN 183
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein,
molybdate, tungstate, LIGA unknown function, transport
protein; 1.60A {Methanosarcina acetivorans}
Length = 296
Score = 29.7 bits (66), Expect = 2.5
Identities = 27/180 (15%), Positives = 49/180 (27%), Gaps = 29/180 (16%)
Query: 70 KKGGGGKITDEFTGKGAIGQVCQVI--GAVVDVRF---DEGLPPILTALEVVDHSV---- 120
+ G + E G + ++ G DV D L P L E D
Sbjct: 28 AQHPGVDVQREAAGSAQSVR--KITELGKKADV-LASADYALIPSLMVPEYADWYAAFAR 84
Query: 121 -RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTL----------- 168
+++L + + E L R +P P G +
Sbjct: 85 NQMILAYTNE-SKYGDEINTDNWYEILRRPDVRYGFSNPNDDPAGYRSQMVTQLAESYYN 143
Query: 169 --GRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRG 226
+++ + IH PA E + ++ V+L + + G
Sbjct: 144 DDMIYDDLMLANTGMTLTTEENGTALIH--VPASEEISPNTSKIMLRSMEVELSSALETG 201
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 29.0 bits (66), Expect = 3.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 222 PYQRGGKIGLFGGAGVGKTVLIMELINN 249
P K+ + GG GVGK+ L ++ I +
Sbjct: 5 PPSETHKLVVVGGGGVGKSALTIQFIQS 32
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN
protein, ABC transporter, transport protein, ligand,
metal- protein; HET: CIT; 1.69A {Methanosarcina
acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Length = 354
Score = 29.3 bits (65), Expect = 3.4
Identities = 27/180 (15%), Positives = 49/180 (27%), Gaps = 29/180 (16%)
Query: 70 KKGGGGKITDEFTGKGAIGQVCQVI--GAVVDVRF---DEGLPPILTALEVVDHSV---- 120
+ G + E G + ++ G DV D L P L E D
Sbjct: 66 AQHPGVDVQREAAGSAQSVR--KITELGKKADV-LASADYALIPSLMVPEYADWYAAFAR 122
Query: 121 -RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTL----------- 168
+++L + + E L R +P P G +
Sbjct: 123 NQMILAYTNE-SKYGDEINTDNWYEILRRPDVRYGFSNPNDDPAGYRSQMVTQLAESYYN 181
Query: 169 --GRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRG 226
+++ + IH PA E + ++ V+L + + G
Sbjct: 182 DDMIYDDLMLANTGMTLTTEENGTALIH--VPASEEISPNTSKIMLRSMEVELSSALETG 239
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair,
DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A
{Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Length = 377
Score = 29.1 bits (65), Expect = 4.1
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 421 LGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDK 480
+ A D +L V++ +K L I +++L + +
Sbjct: 296 YDVQQAAQLDDVLVSARGYRLLKTVARIPLSIGYNVVRMFKTLDQISK-ASVEDLKKVEG 354
Query: 481 LTVARARKIQRFLSQP 496
+ RAR I +S
Sbjct: 355 IGEKRARAISESISSL 370
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 28.7 bits (65), Expect = 4.2
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249
++ +FG GVGK+ L++ +
Sbjct: 3 PEQSNDYRVVVFGAGGVGKSSLVLRFVKG 31
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions,
DNA HYDR sodium ION, quadruplex DNA, DNA-binding
protein-DNA complex; 1.86A {Sterkiella nova} SCOP:
b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A
1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A
1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Length = 495
Score = 29.2 bits (64), Expect = 4.2
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 17/88 (19%)
Query: 45 LSRVSEYATSAAA-----TAPPAQTPKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVD 99
+S ++ S + TA P + KG + + Q V+D
Sbjct: 1 MSTAAKQNRSTSRVSKKKTAAPKEGAAKKSDKGHKYEYVELAKASLTSAQPQHFYAVVID 60
Query: 100 VRFDEGLPPILT-------ALEVVDHSV 120
P T +L++VD ++
Sbjct: 61 AT-----FPYKTNQERYICSLKIVDPTL 83
>3etv_A Protein transport protein TIP20,linker,protein transport protein
DSL1; TIP20P-DSL1P complex, endoplasmic reticulum,
ER-golgi transport; 1.94A {Saccharomyces cerevisiae}
PDB: 3etu_A
Length = 355
Score = 29.0 bits (64), Expect = 4.3
Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 10/112 (8%)
Query: 428 DPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARAR 487
LD+ + + + + +++ Y NL I++++ +++ +
Sbjct: 187 GSLDNQAWFILDMTSADSQEQVRAKLNTIMKEYMNLSRIVSMIKNSIFISGKEISYENEK 246
Query: 488 KIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMV 539
I F H + + SF+ V D D L + +
Sbjct: 247 NILVFSKSSSHGQH----------CVSTVLTSFEAVCDFMLDGLAFRDRKTL 288
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase,
nuclease, double strand DNA repair, protein-DNA CO
hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus
subtilis} PDB: 3u44_B*
Length = 1166
Score = 29.3 bits (65), Expect = 4.6
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 231 LFGGAGVGKT-VLIMELINNVAKAHGGFSVFAGVGER-TRE 269
L G +G GKT ++I + + + +A G + V ++ T
Sbjct: 6 LVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFL 46
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA
capture mechanism, ATP-binding, hydrolase,
nucleotide-binding, RN binding; 2.35A {Thermotoga
maritima}
Length = 427
Score = 29.1 bits (66), Expect = 4.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 413 VLSRQISELGIYPAVDPLDSTSR 435
VLSRQ++ I+PA++ L S +R
Sbjct: 348 VLSRQLANKRIFPAINLLLSGTR 370
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability;
2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1
c.1.8.1
Length = 515
Score = 29.0 bits (65), Expect = 5.3
Identities = 9/64 (14%), Positives = 17/64 (26%), Gaps = 7/64 (10%)
Query: 368 LGGLQERITTTKKGSIT------SVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISEL 421
G + +T G SV +++VP + + L
Sbjct: 453 TGNRSDTVTINSDGWGEFKVNGGSV-SVWVPRKTTVSTIAWSITTRPWTDEFVRWTEPRL 511
Query: 422 GIYP 425
+P
Sbjct: 512 VAWP 515
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 28.7 bits (64), Expect = 5.4
Identities = 10/55 (18%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 231 LFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE-----RTREGNDLYREMIES 280
L+G G+GK+ L+ + + +++ G + + N +E I++
Sbjct: 157 LYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDA 211
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 27.9 bits (63), Expect = 5.6
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+G+ G GK+ L+ +
Sbjct: 22 KVGIVGNLSSGKSALVHRYLTG 43
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 28.0 bits (63), Expect = 5.7
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
++G+ G A GK+ LI +
Sbjct: 9 RLGVLGDARSGKSSLIHRFLTG 30
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 28.1 bits (62), Expect = 5.9
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVF 260
+ + G GVG T ++N+ K + +
Sbjct: 5 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMV 37
>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding,
structural GE PSI, protein structure initiative; 2.40A
{Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1
Length = 404
Score = 28.7 bits (65), Expect = 6.0
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 8/60 (13%)
Query: 87 IGQVCQVIGAVVDVRFDEGLPPILTALEVVDHS--VRLVLEVAQHMGEGVVRTIAMDGTE 144
+ GA + ++ LP V + + E A +G V G E
Sbjct: 296 AEGIAAGYGAQAEFKWFPYLPS------VQNDGTFLNAASEAAARLGYQTVHAEQSPGGE 349
>3ice_A Transcription termination factor RHO; transcription, ATPase,
hexamer, helicase, RNA, RECA, OB fold ATP-binding,
hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli
k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Length = 422
Score = 28.7 bits (65), Expect = 6.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 413 VLSRQISELGIYPAVDPLDSTSR 435
LSR+I+E ++PA+D S +R
Sbjct: 347 HLSRKIAEKRVFPAIDYNRSGTR 369
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 27.9 bits (63), Expect = 6.5
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 222 PYQRGGKIGLFGGAGVGKTVLIMELINN 249
P R K+ + G VGKT L + +
Sbjct: 20 PLVRYRKVVILGYRCVGKTSLAHQFVEG 47
>3s81_A Putative aspartate racemase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha beta
fold, cytosol; 1.80A {Salmonella enterica subsp} PDB:
3s7z_A
Length = 268
Score = 28.1 bits (62), Expect = 7.4
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 228 KIGLFGGAGVGKTVLIMELINNVAKAHGG 256
IG+ GG G T ++E + A
Sbjct: 28 TIGILGGMGPAATADMLEKFVELRHASCD 56
>3icl_A EAL/ggdef domain protein; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics,
consortium, NESG; HET: MSE; 2.00A {Methylococcus
capsulatus}
Length = 171
Score = 27.4 bits (62), Expect = 8.5
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 464 QDIIAILGMDE----LSEDDKLTVAR--ARKIQRFLSQPFHVA--EVFTGA 506
D +A +G D+ L+ A+KI L+QPF ++
Sbjct: 71 GDTVARIGGDKFTILLNGAKDTLNGALVAQKILDGLAQPFVFGAQQIVISV 121
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural
genomics, IDP90671, center for structural genomic
infectious diseases; HET: MSE; 1.87A {Campylobacter
jejuni subsp} PDB: 3o6d_A*
Length = 260
Score = 27.6 bits (62), Expect = 9.4
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 459 NYKNLQDIIAILGMDELS 476
NYKN++ ++ I + EL+
Sbjct: 216 NYKNVKPVVKIKEICELN 233
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A
{Arabidopsis thaliana}
Length = 537
Score = 28.0 bits (63), Expect = 9.8
Identities = 5/22 (22%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 424 YPAVDPLDSTSRMLSPHI-LGE 444
P+ +T+ +SP++ G
Sbjct: 248 DPSAFLKPATTV-MSPYLKFGC 268
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A
{Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Length = 176
Score = 27.2 bits (61), Expect = 9.9
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 231 LFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV--GERTREGNDLYREMIESG 281
L GG +G +M AK GG ++ GV G T E +D I +G
Sbjct: 49 LTGGRSLG----VMHEAMKGAKEAGGTTI--GVLPGPDTSEISDAVDIPIVTG 95
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.375
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,504,501
Number of extensions: 561806
Number of successful extensions: 1476
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1412
Number of HSP's successfully gapped: 95
Length of query: 558
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 460
Effective length of database: 3,965,535
Effective search space: 1824146100
Effective search space used: 1824146100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)