RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 008638
(558 letters)
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 372 bits (957), Expect = e-127
Identities = 240/278 (86%), Positives = 254/278 (91%), Gaps = 2/278 (0%)
Query: 159 ITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVD 218
I +PVG TLGRIMNVIGEPIDE+G +KT+ + IH EAP FVE + EQ+ILVTGIKVVD
Sbjct: 1 IRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVD 60
Query: 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMI 278
LLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGERTREGNDLY EMI
Sbjct: 61 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI 120
Query: 279 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIF 338
ESGVI L D A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EGQDVLLFIDNIF
Sbjct: 121 ESGVINLKD--ATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 178
Query: 339 RFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTD 398
RFTQA SEVSALLGRIPSAVGYQPTLATD+G +QERITTTKKGSITSVQAIYVPADDLTD
Sbjct: 179 RFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTD 238
Query: 399 PAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRM 436
PAPATTFAHLDATTVLSR I+ELGIYPAVDPLDSTSR+
Sbjct: 239 PAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRI 276
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 337 bits (865), Expect = e-113
Identities = 70/291 (24%), Positives = 131/291 (45%), Gaps = 20/291 (6%)
Query: 159 ITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVD 218
+ VPVG LGR+++ +G ID KG + ++ + +AP + + + ++ + TGIK VD
Sbjct: 1 VDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVD 60
Query: 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-------FSVFAGVGERTREGN 271
L P RG + + G GKT + ++ I N + + G + ++ +G++
Sbjct: 61 SLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVA 120
Query: 272 DLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVL 331
L + + ++ +K +V ++ + +G ++ E+FRD G+ L
Sbjct: 121 QLVKRLTDADAMK--------YTIVVSATASDAAPLQYLAPYSGCSMGEYFRD-NGKHAL 171
Query: 332 LFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKK----GSITSVQ 387
+ D++ + A ++S LL R P Y + L ER GS+T++
Sbjct: 172 IIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALP 231
Query: 388 AIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLS 438
I A D++ P + D L ++ GI PA++ S SR+ S
Sbjct: 232 VIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGS 282
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1
ATP synthase {Spinach (Spinacia oleracea), chloroplast
[TaxId: 3562]}
Length = 276
Score = 282 bits (723), Expect = 2e-92
Identities = 67/282 (23%), Positives = 118/282 (41%), Gaps = 14/282 (4%)
Query: 161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLL 220
+PV LGR++N + +PID +G++ I AP + + + + L TG+ +D +
Sbjct: 2 IPVSEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAM 61
Query: 221 APYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIES 280
P RG + + G GKT + + I N + V+ +G++ + E
Sbjct: 62 IPVGRGQRELIIGDRQTGKTAVATDTILN-QQGQNVICVYVAIGQKASSVAQVVTNFQER 120
Query: 281 GVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRF 340
G ++ +V + P + TG +AE+F + L+ D++ +
Sbjct: 121 GAME--------YTIVVAETADSPATLQYLAPYTGAALAEYFMY-RERHTLIIYDDLSKQ 171
Query: 341 TQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKK----GSITSVQAIYVPADDL 396
QA ++S LL R P Y + L ER GS+T++ + A D+
Sbjct: 172 AQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSLLGEGSMTALPIVETQAGDV 231
Query: 397 TDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLS 438
+ P + D LS + GI PA++ S SR+ S
Sbjct: 232 SAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGS 273
>d1skye1 a.69.1.1 (E:357-470) F1 ATP synthase beta subunit, domain 3
{Bacillus sp., strain ps3 [TaxId: 1409]}
Length = 114
Score = 204 bits (520), Expect = 2e-64
Identities = 72/111 (64%), Positives = 87/111 (78%)
Query: 441 ILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVA 500
I+GEEHY AR VQ+ L+ YK LQDIIAILGMDELS++DKL V RAR+IQ FLSQ FHVA
Sbjct: 2 IVGEEHYQVARKVQQTLERYKELQDIIAILGMDELSDEDKLVVHRARRIQFFLSQNFHVA 61
Query: 501 EVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEK 551
E FTG PG YV +KE++ F+ +L+GKYD LPE F +VG IEEV+ KA+
Sbjct: 62 EQFTGQPGSYVPVKETVRGFKEILEGKYDHLPEDRFRLVGRIEEVVEKAKA 112
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 207 bits (528), Expect = 2e-63
Identities = 53/296 (17%), Positives = 113/296 (38%), Gaps = 23/296 (7%)
Query: 188 EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247
E+ P+H + +E+ +V+DL +P RG + + GKT+L+ +
Sbjct: 6 ENLTPLHANSRLRMERGNGSTED-LTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIA 64
Query: 248 NNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGA 307
++A H + + + E + +++ V V +EP
Sbjct: 65 QSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEV--------------VASTFDEPASR 110
Query: 308 RARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATD 367
+V + A+ + +DV++ +D+I R +A + V G++ + G
Sbjct: 111 HVQVAEMVIEKAKRLVE-HKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHR 168
Query: 368 LGGLQER-ITTTKKGSITSVQAIYVPADDLTDPAPATTF-AHLDATTVLSRQISELGIYP 425
+ GS+T + + D F + LSR+I+E ++P
Sbjct: 169 PKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFP 228
Query: 426 AVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQN---YKNLQDIIAILGMDELSED 478
A+D S +R + +E ++K++ ++ +I L M + ++D
Sbjct: 229 AIDYNRSGTRKE-ELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDD 283
>d2jdid1 a.69.1.1 (D:358-475) F1 ATP synthase beta subunit, domain 3
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 118
Score = 199 bits (509), Expect = 7e-63
Identities = 86/118 (72%), Positives = 103/118 (87%)
Query: 437 LSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQP 496
+ P+I+G EHY+ ARGVQK+LQ+YK+LQDIIAILGMDELSE+DKLTV+RARKIQRFLSQP
Sbjct: 1 MDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQP 60
Query: 497 FHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIAK 554
F VAEVFTG GK V LKE+I FQ +L G+YD LPEQ+FYMVG IEE +AKA+K+A+
Sbjct: 61 FQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAE 118
>d1fx0b1 a.69.1.1 (B:378-485) F1 ATP synthase beta subunit, domain 3
{Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Length = 108
Score = 189 bits (482), Expect = 5e-59
Identities = 74/107 (69%), Positives = 89/107 (83%)
Query: 441 ILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVA 500
I+GEEHY A+ V++ LQ YK LQDIIAILG+DELSE+D+LTVARARKI+RFLSQPF VA
Sbjct: 2 IVGEEHYEIAQRVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVA 61
Query: 501 EVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEEVIA 547
EVFTG+PGKYV L E+I FQ +L G+ D LPEQ+FY+VG I+E A
Sbjct: 62 EVFTGSPGKYVGLAETIRGFQLILSGELDSLPEQAFYLVGNIDEATA 108
>d2jdid2 b.49.1.1 (D:10-81) F1 ATP synthase beta subunit, domain 1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 72
Score = 112 bits (281), Expect = 1e-30
Identities = 53/71 (74%), Positives = 61/71 (85%)
Query: 88 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
G++ VIGAVVDV+FDEGLPPIL ALEV RLVLEVAQH+GE VRTIAMDGTEGLV
Sbjct: 2 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 61
Query: 148 RGQRVLNTGSP 158
RGQ+VL++G+P
Sbjct: 62 RGQKVLDSGAP 72
>d1fx0b2 b.49.1.1 (B:19-97) F1 ATP synthase beta subunit, domain 1
{Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Length = 79
Score = 105 bits (264), Expect = 3e-28
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 87 IGQVCQVIGAVVDVRFDEG-LPPILTALEV-----VDHSVRLVLEVAQHMGEGVVRTIAM 140
+G++ Q+IG V++V F G +P I AL V + + EV Q +G VR +AM
Sbjct: 2 LGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAM 61
Query: 141 DGTEGLVRGQRVLNTGSP 158
T+GL RG V++TG+P
Sbjct: 62 SATDGLTRGMEVIDTGAP 79
>d1skye2 b.49.1.1 (E:1-82) F1 ATP synthase beta subunit, domain 1
{Bacillus sp., strain ps3 [TaxId: 1409]}
Length = 82
Score = 102 bits (255), Expect = 5e-27
Identities = 38/79 (48%), Positives = 53/79 (67%), Gaps = 8/79 (10%)
Query: 88 GQVCQVIGAVVDVRFDEG-LPPILTALEV-------VDHSVRLVLEVAQHMGEGVVRTIA 139
G+V QV+G VVDV+F+ G LP I AL++ + + L LEVA H+G+ VRTIA
Sbjct: 4 GRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIA 63
Query: 140 MDGTEGLVRGQRVLNTGSP 158
M T+GL+RG V++TG+P
Sbjct: 64 MASTDGLIRGMEVIDTGAP 82
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 35.8 bits (81), Expect = 0.010
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Query: 202 EQATEQQILVTGIKVVD--LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSV 259
+Q + L T +D L + G G GKT ++ + N+ F
Sbjct: 8 KQRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYD 67
Query: 260 FAGVGERTREG 270
V +
Sbjct: 68 EEAVSKGEVAQ 78
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 34.4 bits (77), Expect = 0.022
Identities = 20/137 (14%), Positives = 34/137 (24%), Gaps = 3/137 (2%)
Query: 212 TGIKVVD--LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTRE 269
TG K +D L + G +FG GKT + L E
Sbjct: 7 TGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 66
Query: 270 GNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQD 329
G E + + + G +D + Y + + + E D
Sbjct: 67 GTF-RPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVD 125
Query: 330 VLLFIDNIFRFTQANSE 346
+ +
Sbjct: 126 SATALYRTDYSGRGELS 142
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 31.9 bits (71), Expect = 0.14
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 212 TGIKVVD--LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTRE 269
T I+ D G + G +G GKT+ ++ + N VF E ++
Sbjct: 10 TMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQD 69
Query: 270 GNDLYREMIESGV 282
+ + G
Sbjct: 70 ---IIKNARSFGW 79
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 31.5 bits (70), Expect = 0.15
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
++G+ G A GK+ LI +
Sbjct: 7 RLGVLGDARSGKSSLIHRFLTG 28
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 31.6 bits (70), Expect = 0.15
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 227 GKIGLFGGAGVGKTVLIMELINN 249
GK+ G GKT L+ L N+
Sbjct: 1 GKLLFLGLDNAGKTTLLHMLKND 23
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 31.2 bits (69), Expect = 0.16
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
KI + G VGK+ L ++ +
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEG 27
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 32.2 bits (72), Expect = 0.16
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 5/87 (5%)
Query: 183 GDLKTEHYLPIHREAPAFVEQATEQQILV---TGIKVVDLLAPYQRGGK-IGLFGGAGVG 238
G+ + R V +++ + V + P + + + G G G
Sbjct: 4 GEFGGAPFKRFLRGT-RIVSGGKLKRMTREKAKQVTVAGVPMPRDAEPRHLLVNGATGTG 62
Query: 239 KTVLIMELINNVAKAHGGFSVFAGVGE 265
K+VL+ EL + G+
Sbjct: 63 KSVLLRELAYTGLLRGDRMVIVDPNGD 89
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 31.9 bits (71), Expect = 0.18
Identities = 10/50 (20%), Positives = 16/50 (32%)
Query: 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTR 268
+L G L G GK++L ++L +A V
Sbjct: 22 VLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVI 71
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 31.1 bits (69), Expect = 0.20
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
++ +FG GVGK+ L++ +
Sbjct: 4 RVAVFGAGGVGKSSLVLRFVKG 25
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 31.1 bits (69), Expect = 0.21
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 222 PYQRGGKIGLFGGAGVGKTVLIMELINN 249
P K + G VGKT L+M N+
Sbjct: 5 PGALMLKCVVVGDGAVGKTCLLMSYAND 32
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 31.2 bits (69), Expect = 0.22
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ + GG GVGK+ L ++ I +
Sbjct: 8 KLVVVGGGGVGKSALTIQFIQS 29
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 30.8 bits (68), Expect = 0.23
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ +FG AGVGK+ L++ +
Sbjct: 4 KLAIFGRAGVGKSALVVRFLTK 25
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 30.7 bits (68), Expect = 0.24
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ L G GVGK+ ++ + +
Sbjct: 6 KVCLLGDTGVGKSSIMWRFVED 27
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 30.8 bits (68), Expect = 0.25
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ L G G GKT + +
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTG 26
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 30.8 bits (68), Expect = 0.25
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ L G A VGK+ +++ ++N
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSN 26
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 31.5 bits (70), Expect = 0.25
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 210 LVTGIKVVD-LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 254
L +G ++ + G I + G+G+GK+ + + A
Sbjct: 18 LFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM 63
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 30.7 bits (68), Expect = 0.26
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ L G VGKT L++ N
Sbjct: 5 KVVLLGEGCVGKTSLVLRYCEN 26
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 30.8 bits (68), Expect = 0.26
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 215 KVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINN 249
V+ L Y++ GK+ G GKT L+ L ++
Sbjct: 2 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDD 36
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 30.7 bits (68), Expect = 0.27
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K + G VGKT L++ N
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTN 26
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 30.7 bits (68), Expect = 0.27
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ + G GVGK+ L ++LI N
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQN 26
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 30.8 bits (68), Expect = 0.28
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
++ + GG GVGK+ L ++ I +
Sbjct: 7 RLVVVGGGGVGKSALTIQFIQS 28
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 30.7 bits (68), Expect = 0.28
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ + G GKT L++ +
Sbjct: 4 KLVIVGDGACGKTCLLIVNSKD 25
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 30.8 bits (68), Expect = 0.28
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
KI + G + GKT L+ +
Sbjct: 4 KIVVVGDSQCGKTALLHVFAKD 25
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 30.8 bits (68), Expect = 0.29
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ + G +GVGKT L+ +N+
Sbjct: 4 KVIILGDSGVGKTSLMHRYVND 25
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 30.8 bits (68), Expect = 0.29
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ + G GVGK+ L ++
Sbjct: 6 KLVVVGDGGVGKSALTIQFFQK 27
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 30.3 bits (67), Expect = 0.33
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ + G GVGK+ L ++ + +
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYD 27
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 30.4 bits (67), Expect = 0.33
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ + G +GVGKT L+ + +N
Sbjct: 4 KVIILGDSGVGKTSLMNQYVNK 25
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 30.3 bits (67), Expect = 0.33
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ + G GVGK+ L ++ +
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQG 26
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 30.4 bits (67), Expect = 0.34
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ + G VGK+ +I
Sbjct: 4 KMVVVGNGAVGKSSMIQRYCKG 25
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 30.3 bits (67), Expect = 0.34
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ + G GVGK+ L ++ +
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTG 26
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 30.5 bits (67), Expect = 0.37
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
++ L G GVGK+ L
Sbjct: 5 RVVLIGEQGVGKSTLANIFAGV 26
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 30.8 bits (68), Expect = 0.39
Identities = 23/108 (21%), Positives = 33/108 (30%), Gaps = 3/108 (2%)
Query: 197 APAFVEQATEQQILVTGIKVVD--LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 254
A F + +E L TG K +D L + G LFG GK+ L L
Sbjct: 3 AADFHMRRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPL 62
Query: 255 GGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMN 302
EG + S + G D+ + Y +
Sbjct: 63 DIGGGEGKCLYIDTEG-TFRPVRLVSIAQRFGLDPDDALNNVAYARAY 109
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 30.1 bits (66), Expect = 0.45
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ L G GVGK+ L
Sbjct: 3 KVLLLGAPGVGKSALARIFGGV 24
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 29.9 bits (66), Expect = 0.45
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ G VGKT LI + +
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYD 23
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 30.0 bits (66), Expect = 0.45
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ L G + VGK+ L++ +
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKG 29
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 30.3 bits (67), Expect = 0.48
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 203 QATEQQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVF 260
Q + + +G+ +D + + + I G G GKT+L+ + N +F
Sbjct: 1 QRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILF 60
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 30.0 bits (66), Expect = 0.48
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K + G VGKT L++ N
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTN 28
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 30.1 bits (66), Expect = 0.57
Identities = 14/78 (17%), Positives = 20/78 (25%), Gaps = 2/78 (2%)
Query: 202 EQATEQQILVTGIKVVD--LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSV 259
E+ + TG + D L + FG GKT L L G
Sbjct: 11 EKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYP 70
Query: 260 FAGVGERTREGNDLYREM 277
+ E +
Sbjct: 71 GGKIIFIDTENTFRPDRL 88
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 29.9 bits (66), Expect = 0.59
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K + G AG GK+ L+ + I
Sbjct: 7 KFLVIGNAGTGKSCLLHQFIEK 28
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015
{Pyrococcus furiosus [TaxId: 2261]}
Length = 68
Score = 27.8 bits (62), Expect = 0.64
Identities = 7/45 (15%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 454 QKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFH 498
+++L+++ +++ + + EL + + + A++I+R ++ P+
Sbjct: 24 RRLLKHFGSVERVFTA-SVAELMKVEGIGEKIAKEIRRVITAPYI 67
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 30.1 bits (67), Expect = 0.65
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 215 KVVDLLAPY-----QRGGK----IGLFGGAGVGKTVLIMELINNVAKAHGG 256
++ L Y + G K I G G GK+ +++ N++ + +GG
Sbjct: 7 YTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGG 57
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 29.6 bits (65), Expect = 0.65
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
KI + G + VGKT L
Sbjct: 4 KIIVIGDSNVGKTCLTYRFCAG 25
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 29.5 bits (65), Expect = 0.66
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K + G GVGK+ L+ +
Sbjct: 6 KYIIIGDMGVGKSCLLHQFTEK 27
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 29.4 bits (65), Expect = 0.74
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
KI + G +GVGK+ L++ ++
Sbjct: 9 KILIIGESGVGKSSLLLRFTDD 30
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 29.7 bits (65), Expect = 0.74
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 228 KIGLFGGAGVGKTVLIMEL 246
+ + GG GK+VL+ +L
Sbjct: 9 TVAILGGESSGKSVLVNKL 27
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 29.5 bits (65), Expect = 0.79
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ L G +GVGK+ L+ N
Sbjct: 6 KVVLIGDSGVGKSNLLSRFTRN 27
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 29.5 bits (65), Expect = 0.79
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ L G +GVGKT L++ +
Sbjct: 8 KVMLVGDSGVGKTCLLVRFKDG 29
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 29.1 bits (64), Expect = 0.82
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K + G GVGK+ L+++ +
Sbjct: 5 KYIIIGDTGVGKSCLLLQFTDK 26
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 29.2 bits (64), Expect = 0.82
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ L G GVGK+ L+ + N
Sbjct: 8 KVILLGDGGVGKSSLMNRYVTN 29
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 29.5 bits (65), Expect = 0.85
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ G +GVGKT + +N
Sbjct: 7 KLLALGDSGVGKTTFLYRYTDN 28
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 29.4 bits (65), Expect = 0.88
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ L G +GVGK+ L++ ++
Sbjct: 8 KLLLIGNSGVGKSCLLLRFSDD 29
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 29.7 bits (65), Expect = 0.90
Identities = 9/55 (16%), Positives = 17/55 (30%)
Query: 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIE 279
R + G GK+ +I IN + + + D E+ +
Sbjct: 28 RAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQK 82
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 29.0 bits (64), Expect = 0.90
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
KI L G AGVGKT L+
Sbjct: 7 KIVLIGNAGVGKTCLVRRFTQG 28
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 28.9 bits (63), Expect = 0.91
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
+I + G GKT ++ +L
Sbjct: 2 RILMVGLDAAGKTTILYKLKLG 23
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 29.4 bits (65), Expect = 0.93
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 215 KVVDLL--APYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGF 257
+V+ L + L G AG GK+V+ + ++ + G
Sbjct: 31 RVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGIN 75
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 29.0 bits (64), Expect = 1.0
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
K+ L G +GVGKT ++ +
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSED 29
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 28.8 bits (63), Expect = 1.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSV 259
KI + G GVGKT L+ +++ + K GF
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWT 33
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 28.7 bits (63), Expect = 1.1
Identities = 17/126 (13%), Positives = 26/126 (20%), Gaps = 16/126 (12%)
Query: 229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT----REGNDLYR-------EM 277
+ G GKT L+ + + + G EG D R
Sbjct: 4 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVAT 63
Query: 278 IESG-----VIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLL 332
G + +Y + R E L
Sbjct: 64 AVEGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVLVEGYKQERHPKVVLVRSEEDWASLQ 123
Query: 333 FIDNIF 338
+ NI
Sbjct: 124 HLANIR 129
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 28.8 bits (63), Expect = 1.2
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFA 261
+ L G GVGKT LI + + + F
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY 36
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 29.3 bits (64), Expect = 1.3
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 220 LAPYQR------GGKIGLFGGAGVGKTVLIMELINNVAKAHG 255
L P Q+ G + GAG GKT +I I ++ + G
Sbjct: 2 LNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCG 43
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 28.2 bits (62), Expect = 1.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
KI L G +GVGK+ L++ + +
Sbjct: 4 KILLIGDSGVGKSCLLVRFVED 25
>d1jfla1 c.78.2.1 (A:1-115) Aspartate racemase {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 115
Score = 27.5 bits (61), Expect = 1.9
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 228 KIGLFGGAGVGKTVLIMELINNVAKAHGG 256
IG+ GG G T + I A
Sbjct: 3 TIGILGGMGPLATAELFRRIVIKTPAKRD 31
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 28.6 bits (63), Expect = 2.2
Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 5/88 (5%)
Query: 184 DLKTEHYLPIHREAPAFVEQATEQQILVTGI-KVVDLLAPYQRGG-KIGLFGGAGVGKTV 241
T + I +E +E + + D L + + G G GK+
Sbjct: 13 KFNTGRKI-ISQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSS 71
Query: 242 LIMELINNVAKAHGGFSVFAGVGERTRE 269
I L + G + GV E T E
Sbjct: 72 FINTLRGIGNEEEG--AAKTGVVEVTME 97
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 27.7 bits (61), Expect = 2.3
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 204 ATEQQILVTGIKVVDLLAPY--QRGGKIGLFGGAGVGKTVLIMELINNVAKAHG 255
E +L G K ++L ++ + L G G GKT L ++ +
Sbjct: 9 PDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGN 62
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 28.3 bits (62), Expect = 2.4
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 215 KVVDLLAPYQ-RGGKIGLFGGAGVGKTVLIMELI 247
+++D + PY ++G+ G G GK+ +
Sbjct: 42 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFG 75
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 27.6 bits (60), Expect = 2.6
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINN 249
L + + +I L G GKT L+ +L +
Sbjct: 9 LKSAPDQEVRILLLGLDNAGKTTLLKQLASE 39
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 27.4 bits (59), Expect = 4.1
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 197 APAFVEQATEQQILVTGIKVVD--LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 254
A ++++ + TG K +D L + +FG G GKT L L V
Sbjct: 5 ADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPP 64
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum
pernix [TaxId: 56636]}
Length = 70
Score = 25.5 bits (56), Expect = 4.5
Identities = 9/44 (20%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 454 QKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPF 497
+++L+ + +L+ E+S+ + + RA +I++ L P+
Sbjct: 27 ERILERFGSLERFFT-ASKAEISKVEGIGEKRAEEIKKILMTPY 69
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 27.2 bits (59), Expect = 5.3
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 215 KVVDLLAPYQ-RGGKIGLFGGAGVGKTVLIMELI 247
++D + P R ++G+ G GVGK+ I L
Sbjct: 39 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALG 72
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 26.5 bits (57), Expect = 6.6
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 228 KIGLFGGAGVGKTVLIMELINN 249
+ G GKT+L + L+
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTG 23
>d1pm3a_ b.41.1.2 (A:) MTH1895 {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 78
Score = 25.2 bits (55), Expect = 6.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 76 KITDEFTGKGAIGQVCQVIGAVVDVRFDE 104
+I +E GK + +VIG V DV D
Sbjct: 3 RIVEEMVGKEVLDSSAKVIGKVKDVEVDI 31
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 26.6 bits (58), Expect = 7.0
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 223 YQRGGKIGLFGGAGVGKTVLIMELINN 249
Y+ ++ L G GK+ ++ ++
Sbjct: 3 YRATHRLLLLGAGESGKSTIVKQMRIL 29
>d1p4ta_ f.4.1.1 (A:) Outer membrane protein NspA {Neisseria
meningitidis [TaxId: 487]}
Length = 155
Score = 26.2 bits (57), Expect = 7.5
Identities = 4/48 (8%), Positives = 15/48 (31%)
Query: 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG 264
+ + + + GA + ++L + + + + G
Sbjct: 66 ASAIYDFDTQSPVKPYLGARLSLNRASVDLGGSDSFSQTSIGLGVLTG 113
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.375
Gapped
Lambda K H
0.267 0.0406 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,950,875
Number of extensions: 93011
Number of successful extensions: 396
Number of sequences better than 10.0: 1
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 86
Length of query: 558
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 468
Effective length of database: 1,171,896
Effective search space: 548447328
Effective search space used: 548447328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)