BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008640
(558 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZXC|A Chain A, Seramidase Complexed With C2
pdb|2ZXC|B Chain B, Seramidase Complexed With C2
pdb|2ZWS|A Chain A, Crystal Structure Analysis Of Neutral Ceramidase From
Pseudomonas Aeruginosa
Length = 646
Score = 185 bits (469), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 98/232 (42%), Positives = 143/232 (61%), Gaps = 13/232 (5%)
Query: 1 MMGYANMEQIASGIHFRLRARTFIVAEP-QGNRVVFVNLDACMASQIVKIKVIERLKARY 59
MMGY+++EQ +GIH R AR F++ E G R+V+VN D M Q V +KV+ RLKA+Y
Sbjct: 23 MMGYSSLEQKTAGIHMRQWARAFVIEEAASGRRLVYVNTDLGMIFQAVHLKVLARLKAKY 82
Query: 60 GDLYTEKNVAISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLR 119
+Y E NV ++ HTH+GPGG+ Y +Y ++ LGF ++F+A+VDGI +S+ +A L+
Sbjct: 83 PGVYDENNVMLAATHTHSGPGGFSHYAMYNLSVLGFQEKTFNAIVDGIVRSIERAQARLQ 142
Query: 120 PGSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDKEMTLLKFVDDQWGPVGSFNW 179
PG +F GEL +AS +RS ++L NP + Y+ +D +M++L FVD G+ +W
Sbjct: 143 PGRLFYGSGELRNASRNRSLLSHLKNP--DIAGYEDGIDPQMSVLSFVDANGELAGAISW 200
Query: 180 FATHGTSMSRTNSLISGDNKGAAARFMED----------WFEQSNAGHSSAD 221
F H TSM+ N LIS DNKG A+ E F Q+NAG+ S +
Sbjct: 201 FPVHSTSMTNANHLISPDNKGYASYHWEHDVSRKSGFVAAFAQTNAGNLSPN 252
Score = 149 bits (377), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/277 (33%), Positives = 137/277 (49%), Gaps = 34/277 (12%)
Query: 278 AEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPCDFNHSTCGGKNEMCYGRGPGYPDEFE 337
+ K GFV+AF Q+N G++SPN+ + G GP + +EF+
Sbjct: 232 SRKSGFVAAFAQTNAGNLSPNL-----------------------NLKPGSGP-FDNEFD 267
Query: 338 STRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCXXX 397
+TR IG RQF KA ++ +A E++ G++D R ++DF++L + +G + T
Sbjct: 268 NTREIGLRQFAKAYEIAGQAQEEVLGELDSRFRFVDFTRLPIRPEFTDGQPRQLCTAAIG 327
Query: 398 XXXXXXXXXXXXXXXXXFTQGDDKGNPFWRLVRDLLKK-PDKEQINCQYPKPILLDTGEM 456
++ NPF + LL P +E + CQ K IL DTG
Sbjct: 328 TSLAAGSTEDGPGPLGL----EEGNNPFLSALGGLLTGVPPQELVQCQAEKTILADTGN- 382
Query: 457 KQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVL 516
K+PY W P++LPIQ+ ++GQL +L P EFT MAG R+R AV+ G HVV
Sbjct: 383 KKPYPWTPTVLPIQMFRIGQLELLGAPAEFTVMAGVRIRRAVQAASEAAGIR----HVVF 438
Query: 517 AGLTNSYSQYVTTFEEYQVQRYEVSTWFIPPTCLSNY 553
G N+Y+ YVTT EEY Q YE + P + Y
Sbjct: 439 NGYANAYASYVTTREEYAAQEYEGGSTLYGPWTQAAY 475
>pdb|3BAL|A Chain A, Crystal Structure Of An Acetylacetone Dioxygenase From
Acinetobacter Johnsonii
pdb|3BAL|B Chain B, Crystal Structure Of An Acetylacetone Dioxygenase From
Acinetobacter Johnsonii
pdb|3BAL|C Chain C, Crystal Structure Of An Acetylacetone Dioxygenase From
Acinetobacter Johnsonii
pdb|3BAL|D Chain D, Crystal Structure Of An Acetylacetone Dioxygenase From
Acinetobacter Johnsonii
Length = 153
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 12/105 (11%)
Query: 99 SFDALVDGIEKSVLQAHENLRPGSIFVNKGELL-------DASISRSPSAYLNNPASERG 151
S+ A+ + S +H + PG F+ KG++ S + +PS + + G
Sbjct: 46 SWTAIFNCPAGSSFASHIHAGPGEYFLTKGKMEVRGGEQEGGSTAYAPSYGFESSGALHG 105
Query: 152 KYKYNVDKEMTL-----LKFVDDQWGPVGSFNWFATHGTSMSRTN 191
K + V+ + + L F+DD + S W G ++ N
Sbjct: 106 KTFFPVESQFYMTFLGPLNFIDDNGKVIASIGWAEAQGAWLATKN 150
>pdb|4FHG|A Chain A, Spore Photoproduct Lyase C140s Mutant
Length = 368
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 417 QGDDKGNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWA 463
+G D + + L++ KP K I +YPK LD E K+ Y W
Sbjct: 285 EGMDLSDLTFELIQHRFTKPAKRVIEQRYPK-TRLDLDETKRKYKWG 330
>pdb|4FHE|A Chain A, Spore Photoproduct Lyase C140a Mutant
pdb|4FHF|A Chain A, Spore Photoproduct Lyase C140a Mutant With Dinucleoside
Spore Photoproduct
Length = 368
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 417 QGDDKGNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWA 463
+G D + + L++ KP K I +YPK LD E K+ Y W
Sbjct: 285 EGMDLSDLTFELIQHRFTKPAKRVIEQRYPK-TRLDLDETKRKYKWG 330
>pdb|4FHC|A Chain A, Spore Photoproduct Lyase
pdb|4FHD|A Chain A, Spore Photoproduct Lyase Complexed With Dinucleoside Spore
Photoproduct
Length = 368
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 417 QGDDKGNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWA 463
+G D + + L++ KP K I +YPK LD E K+ Y W
Sbjct: 285 EGMDLSDLTFELIQHRFTKPAKRVIEQRYPK-TRLDLDETKRKYKWG 330
>pdb|3S6B|A Chain A, Crystal Structure Of Methionine Aminopeptidase 1b From
Plasmodium Falciparum, Pf10_0150
Length = 368
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 88 YIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELLDASISR 137
Y V + V + LV+ S+++A + +PG + N G L+DA +S+
Sbjct: 209 YFVGDINDVPKEGKELVETCYFSLMEAIKKCKPGMFYKNIGTLIDAYVSK 258
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,699,420
Number of Sequences: 62578
Number of extensions: 700227
Number of successful extensions: 1444
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1434
Number of HSP's gapped (non-prelim): 9
length of query: 558
length of database: 14,973,337
effective HSP length: 104
effective length of query: 454
effective length of database: 8,465,225
effective search space: 3843212150
effective search space used: 3843212150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)