Query 008640
Match_columns 558
No_of_seqs 169 out of 534
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 14:43:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008640.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008640hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2232 Ceramidases [Signal tr 100.0 5E-141 1E-145 1102.6 34.9 511 1-558 50-570 (734)
2 PTZ00487 ceramidase; Provision 100.0 8E-132 2E-136 1101.7 48.0 490 1-558 58-552 (715)
3 PF04734 Ceramidase_alk: Neutr 100.0 6E-133 1E-137 1117.7 37.7 490 1-558 20-513 (674)
4 COG3356 Predicted membrane pro 97.6 0.00053 1.2E-08 76.0 12.1 117 1-131 413-533 (578)
5 PF09843 DUF2070: Predicted me 97.5 0.00088 1.9E-08 64.9 11.3 115 2-130 43-162 (179)
6 PTZ00397 macrophage migration 64.8 16 0.00034 32.6 5.6 50 23-75 49-103 (116)
7 PF01282 Ribosomal_S24e: Ribos 47.7 37 0.00081 29.0 4.8 35 44-80 11-45 (84)
8 PF14552 Tautomerase_2: Tautom 45.5 26 0.00056 29.8 3.5 46 30-77 26-76 (82)
9 PTZ00450 macrophage migration 45.4 48 0.001 29.9 5.4 49 23-74 49-102 (113)
10 PF01960 ArgJ: ArgJ family; I 38.8 1E+02 0.0022 33.8 7.5 46 18-73 54-101 (388)
11 TIGR03196 pucD xanthine dehydr 30.8 2.4E+02 0.0053 33.6 9.6 98 30-130 476-574 (768)
12 PF09580 Spore_YhcN_YlaJ: Spor 29.9 1.1E+02 0.0025 28.9 5.7 46 19-73 92-141 (177)
13 PF01187 MIF: Macrophage migra 23.6 1.2E+02 0.0027 26.9 4.3 44 28-73 51-99 (114)
14 PRK12472 hypothetical protein; 23.1 3.5E+02 0.0077 30.6 8.4 94 106-208 308-402 (508)
15 TIGR03194 4hydrxCoA_A 4-hydrox 22.9 2.5E+02 0.0055 33.3 7.9 95 33-130 456-551 (746)
16 PRK00111 hypothetical protein; 22.2 1.7E+02 0.0036 28.8 5.2 54 19-77 106-162 (180)
17 KOG0430 Xanthine dehydrogenase 22.0 2.4E+02 0.0051 35.2 7.3 87 20-122 975-1061(1257)
18 COG3252 Methenyltetrahydrometh 21.4 91 0.002 32.3 3.2 56 20-80 111-175 (314)
19 PF15601 Imm42: Immunity prote 21.3 2.6E+02 0.0057 26.2 6.0 67 48-123 62-133 (134)
20 PF07485 DUF1529: Domain of Un 20.4 1.5E+02 0.0032 27.3 4.2 46 23-78 47-92 (123)
No 1
>KOG2232 consensus Ceramidases [Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-141 Score=1102.62 Aligned_cols=511 Identities=74% Similarity=1.217 Sum_probs=494.3
Q ss_pred CCcccCCCCccceeecceEEEEEEEEcCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEecccCCCCC
Q 008640 1 MMGYANMEQIASGIHFRLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPG 80 (558)
Q Consensus 1 m~GYa~~~~~a~GvhD~L~ARAlvl~~g~~~rva~Vs~Dl~~i~~~l~~~Vr~~l~~~~G~~i~~enIlIsATHTHSgP~ 80 (558)
||||++..|.+.|||.+|+||||++.+++++|++||++|.+|+++.+..+|.+||+.+||++|..+||.||.||||+||+
T Consensus 50 mMGYan~~QvasGIh~Rl~aRaFIvaep~gnRv~FVs~DagM~sq~lkleVi~RLqarYG~lY~~~NVaiSGtHTHagPg 129 (734)
T KOG2232|consen 50 MMGYANSEQVASGIHFRLRARAFIVAEPQGNRVAFVSLDAGMASQGLKLEVIERLQARYGNLYTEDNVAISGTHTHAGPG 129 (734)
T ss_pred eccccchhhhhchheeeeeeeeEEEecCCCceEEEEecchhhhhhhhHHHHHHHHHHhhcccccccceeEecccccCCCc
Confidence 89999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhcccccccchhHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEeccccccCChhhhcCCChhhhccCCCCCCCe
Q 008640 81 GYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDKE 160 (558)
Q Consensus 81 g~~~~~~~~~~~~g~d~~y~~~lv~~iv~AI~~A~~~l~Pa~l~~g~g~~~~~~~NR~~~ay~~nP~~er~~~~g~vD~~ 160 (558)
||+++.+|.++..||.++.|+.++++|.++|.+|++||+|++|.+.+|++.++++||++.+|++||++||++|+..+|++
T Consensus 130 Gylqy~~y~vtslGFv~QsF~~mv~Gi~~sI~qAhenlrpG~iflnkg~llda~vNRSPssYL~NPa~ERsky~~d~DKe 209 (734)
T KOG2232|consen 130 GYLQYVLYIVTSLGFVRQSFDVMVDGIEQSIIQAHENLRPGSIFLNKGELLDAGVNRSPSSYLNNPAEERSKYEYDVDKE 209 (734)
T ss_pred ceeeeeeeeehhcccchHHHHHHHHHHHHHHHHHHhcCCCCeEEecccceecccccCChhHHhcChHhhhhcCccccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCCCCeEE---EEEeeeccccccC---CCCcccc---CCcHHHHHHHHHHHhhccCCCCCCcccccccCCCcc
Q 008640 161 MTLLKFVDDQWGPVG---SFNWFATHGTSMS---RTNSLIS---GDNKGAAARFMEDWFEQSNAGHSSADELVSEGIPRR 231 (558)
Q Consensus 161 l~vL~f~~~dG~pia---~L~nyA~HpT~l~---~~n~lIS---aD~~G~a~~~lE~~~~~~~~~~~~~~~~~~~~~~~~ 231 (558)
|++|||.|.++.|+| +..||++|+++++ +.|+++| +|+.|+++++||++.
T Consensus 210 mtllkfVD~q~~~~Gar~m~dWf~~h~~~~n~~~n~~r~Vss~isd~~~~a~~Lle~~~--------------------- 268 (734)
T KOG2232|consen 210 MTLLKFVDLQWGPLGARFMEDWFEVHNGSMNSSRNSPRRVSSIISDNVGYASLLLEKAS--------------------- 268 (734)
T ss_pred eEEEEEEeccCCccchHHHHHHHHhcccccccccCCcceecccccccccHHHHHHHHhh---------------------
Confidence 999999999999999 5999999999998 6678888 888888888888764
Q ss_pred ccccccccccchhHHHHHhhccCCCCCCchhhhhhhhhhhccccccccCCCeEEEeeccccCCCCCCCCCCccccCCCCC
Q 008640 232 VSDIISDFRNNHHELLELAASFQSPPGKAATKILSVARRVRGILREAEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPC 311 (558)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fVaaf~~g~~GDvsPn~~g~~~~~~~~~c 311 (558)
...+-+|+.++..+|++|+||. ..++.||+||||+|+||||||++|++|.|+|+||
T Consensus 269 --------------------~~~~~pG~~v~~~~~~~~rvr~----~~k~~FVsAFcqsN~GDVSPNilG~~CidtG~~C 324 (734)
T KOG2232|consen 269 --------------------NPNSMPGKSVTRSSSVARRVRN----ADKGKFVSAFCQSNCGDVSPNILGPFCIDTGLPC 324 (734)
T ss_pred --------------------CcccCCCcccccchhhhhhhhc----ccccchhhhhhhccCCCCCcccccchhhcCCCcc
Confidence 3457789999999999999995 6789999999999999999999999999999999
Q ss_pred CCCCCcCCCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhccccccCcceeeEEeeeccceeEeccCCCCCCccc
Q 008640 312 DFNHSTCGGKNEMCYGRGPGYPDEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETV 391 (558)
Q Consensus 312 ~~~~~~c~~~~~~~~~~gp~~~~~~e~~~~ig~~~~~~a~~l~~~~~~~l~g~v~~~~~~~~~~~~~v~~~~~~~~~~~~ 391 (558)
|++||||||+++||+++||+++||||+++|||++|+..|++||++++++++|+|+|+|+||||++++|+++..++..+.+
T Consensus 325 d~~~StC~g~~~~C~~rGPG~pD~FeSTrIiGer~~k~A~eLfnkaSeevqG~v~~~H~~vD~s~l~vt~n~~~~~se~v 404 (734)
T KOG2232|consen 325 DFNHSTCPGGNEMCYGRGPGYPDEFESTRIIGERQFKMALELFNKASEEVQGKVDYRHQYVDFSNLNVTLNKLSGKSEVV 404 (734)
T ss_pred ccccCcCCCCCcceeccCCCCcchhhhhhHHhHHHHHHHHHHHHhhHHHhcCcccceeEeeccccceeEecCcCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988889999
Q ss_pred cccccccccccccccCCCCCCccccCCCCCCCchHHHhhhhcCCCChhhhhccCCcceeecCCCCcCCCCCCCceeeeeE
Q 008640 392 KTCPAAMGFAFAAGTTDGPGAFDFTQGDDKGNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQI 471 (558)
Q Consensus 392 ~tc~~a~G~~faag~~dg~g~~~~~~g~~~~~p~w~~~~~~~~~p~~~~~~cq~pk~ill~~G~~~~p~~~~~~~~~vq~ 471 (558)
||||||||++|||||+||||.|+|+||++.+||||++++++++.|++|+.+||+||||||+||+|++||+|.|.+|++||
T Consensus 405 ktC~~AmGf~FAAGTtDGpGafdF~QG~~~gnpfW~~VRn~l~~P~~e~i~Ch~PKPILL~TGemt~PydW~P~Iv~~Qi 484 (734)
T KOG2232|consen 405 KTCPAAMGFSFAAGTTDGPGAFDFTQGDDQGNPFWRLVRNVLKTPTEEQIKCHKPKPILLDTGEMTKPYDWAPSIVSVQI 484 (734)
T ss_pred ccCcccccccccccccCCCCccccccCCcCCChHHHHHHHHHcCCCHHHhcccCCCceEecccccCCCcCCCccccchhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCEEEEecCCccchHHHHHHHHHHHHHHhhcCCCCCCceEEEEeccCCCcccCCCHhhhccCceee-eeccCCCCCc
Q 008640 472 LQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRYEV-STWFIPPTCL 550 (558)
Q Consensus 472 ~riG~l~i~~~P~E~tt~~G~rlr~~~~~~~~~~~~~~~~~~v~v~gl~Ngy~gYitT~eeY~~q~YEg-sT~~Gp~~tl 550 (558)
||||+|+|+++|||||||+|||||++|++.+++.+. ..+.+|+|+||+|.|++||+|+||||.||||| ||+||| |||
T Consensus 485 lriGql~I~aVPgEFTTMaGRRLR~avka~~~~~g~-~~~~~VVIaGLtN~YsqYi~T~EEYqvQRYE~ASTlyGp-Htl 562 (734)
T KOG2232|consen 485 LRIGQLVILAVPGEFTTMAGRRLRDAVKAALKSSGN-SINMHVVIAGLTNIYSQYITTFEEYQVQRYEGASTLYGP-HTL 562 (734)
T ss_pred eeeccEEEEecCccceehhhHHHHHHHHHHHHhcCC-CcceEEEEeccccchhhhcccHHHHhHHHhhccccccCc-chh
Confidence 999999999999999999999999999999998765 25789999999999999999999999999999 999999 999
Q ss_pred cccccccC
Q 008640 551 SNYLPQLS 558 (558)
Q Consensus 551 ~ay~~~~~ 558 (558)
.+|||+|+
T Consensus 563 S~Yiq~Fk 570 (734)
T KOG2232|consen 563 SAYIQEFK 570 (734)
T ss_pred hHHHHHHH
Confidence 99999985
No 2
>PTZ00487 ceramidase; Provisional
Probab=100.00 E-value=7.9e-132 Score=1101.71 Aligned_cols=490 Identities=51% Similarity=0.913 Sum_probs=460.6
Q ss_pred CCcccCCCCccceeecceEEEEEEEEcCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhC-CCCCCCcEEEEecccCCCC
Q 008640 1 MMGYANMEQIASGIHFRLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYG-DLYTEKNVAISGIHTHAGP 79 (558)
Q Consensus 1 m~GYa~~~~~a~GvhD~L~ARAlvl~~g~~~rva~Vs~Dl~~i~~~l~~~Vr~~l~~~~G-~~i~~enIlIsATHTHSgP 79 (558)
|+||+.+.|+++|||||||||||||++.++++++||++|+++++.+++++|+++|++++| ++|+.+||+|++|||||||
T Consensus 58 m~GYa~~~q~a~GvhdrLyARAfVl~d~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~Gi~~y~~~NVllsATHTHSGP 137 (715)
T PTZ00487 58 MMGYAMPDQRTKGIHFRQRARAFVFADSPGNRAVYVSTDSCMIFQEVKIGVVPKLQEIFGPDLYTLDNVLLSGTHTHSGP 137 (715)
T ss_pred ccccccCCcCccceecceeEEEEEEEeCCCCEEEEEEEcccCCCHHHHHHHHHHHHHHhCcCcCChhhEEEEeeecCCCC
Confidence 899999999999999999999999964339999999999999999999999999999999 5669999999999999999
Q ss_pred CCCccchhhcccccccchhHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEeccccccCChhhhcCCChhhhccCCCCCCC
Q 008640 80 GGYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDK 159 (558)
Q Consensus 80 ~g~~~~~~~~~~~~g~d~~y~~~lv~~iv~AI~~A~~~l~Pa~l~~g~g~~~~~~~NR~~~ay~~nP~~er~~~~g~vD~ 159 (558)
++|.++.+++++..||+++|+++|+++|++||++|+++|+|++|.++++++.+.++|||..+|+.||++++.+|++++|+
T Consensus 138 gg~~~~~l~~~ts~Gf~~qy~~~lvdgIv~AI~~A~~nL~Pa~l~~g~g~~~~aniNRs~~ay~~NP~~er~~y~g~vD~ 217 (715)
T PTZ00487 138 AGFSFYALYGITTLGFYKKNFDTICEGIVQAIVKAHKSVQPARMYTNSGELWNSNINRSPTAYDNNPEEEKAMYDGNVDK 217 (715)
T ss_pred cccccccccccccccccHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeeEEeccccccCChhhhhcCchhhccccCCCCCC
Confidence 99998889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEeCCCCeEEEEEeeeccccccCCCCccccCCcHHHHHHHHHHHhhccCCCCCCcccccccCCCcccccccccc
Q 008640 160 EMTLLKFVDDQWGPVGSFNWFATHGTSMSRTNSLISGDNKGAAARFMEDWFEQSNAGHSSADELVSEGIPRRVSDIISDF 239 (558)
Q Consensus 160 ~l~vL~f~~~dG~pia~L~nyA~HpT~l~~~n~lISaD~~G~a~~~lE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (558)
+|+||+|++.||+++|+|+|||||||+|+..|++||+||+|++++.||+.+++.
T Consensus 218 ~m~vLrf~~~dGkpig~L~~fA~H~Tsl~~~N~lISgD~~G~Aa~~lEk~~~~~-------------------------- 271 (715)
T PTZ00487 218 NMTVLRIEDMNGNPFAAISFFAVHCTSMNNTNHLISGDNKGYASYLWEKYKNGN-------------------------- 271 (715)
T ss_pred ceEEEEEEcCCCCEEEEEEEEeecccccCCCCceecCchHHHHHHHHHHHhccC--------------------------
Confidence 999999999999999999999999999999999999999999999999987541
Q ss_pred ccchhHHHHHhhccCCCCCCchhhhhhhhhhhccccccccCCCeEEEeeccccCCCCCCCCCCccccCCCCCCCCCCcCC
Q 008640 240 RNNHHELLELAASFQSPPGKAATKILSVARRVRGILREAEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPCDFNHSTCG 319 (558)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fVaaf~~g~~GDvsPn~~g~~~~~~~~~c~~~~~~c~ 319 (558)
. ..++..+|||||+|||+||+|||+.|++|+| |++||+.+|||+
T Consensus 272 --------------------------------~---~~pg~~~FVAaF~qg~~GDvsPn~~g~~c~~-g~~c~~~~stc~ 315 (715)
T PTZ00487 272 --------------------------------D---SFPGVGPFIAAFGQSNEGDVSPNTRGPTCRD-GIPCDYKTSTCN 315 (715)
T ss_pred --------------------------------c---cCCCCCceeEEEccCCcccCCCCCCCCcccc-CCcccccccccC
Confidence 0 0122346999999999999999999999999 999999999999
Q ss_pred CCCcccccCCCCCC-CchhHHHHHHHHHHHHHHHHHhhccccccCcceeeEEeeeccceeEeccCCCCCCcccccccccc
Q 008640 320 GKNEMCYGRGPGYP-DEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCPAAM 398 (558)
Q Consensus 320 ~~~~~~~~~gp~~~-~~~e~~~~ig~~~~~~a~~l~~~~~~~l~g~v~~~~~~~~~~~~~v~~~~~~~~~~~~~tc~~a~ 398 (558)
|+.++|+++||++. |++|++++||++|+++|++||+++.++|+|+|+++|.|+||++++|..+.+ +++...+||++||
T Consensus 316 g~~~~c~~~GP~~~~d~~~~t~~iG~rq~~~A~~l~~~~~~~l~G~v~~~h~~~dm~~~~v~~~~~-~~~~~~~tC~aa~ 394 (715)
T PTZ00487 316 GTTEECWGLGPGKDGDMFESTQIIGGNQFNKALELFNNASIQVSGPIQYRHTWLNFTNVSVEPPYN-SGVQVATTCRGAM 394 (715)
T ss_pred CcccceeccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCcccccccceEEEEEeccccEeccccC-CCCCcceeccccc
Confidence 99999999999986 699999999999999999999998899999999999999999999976543 3457889999999
Q ss_pred ccccccccCCCCCCccccCCCCC--CCchHHHhhhhcCCCChhhhhccCCcceeecCCCCcCCCCCCCceeeeeEEEEcC
Q 008640 399 GFAFAAGTTDGPGAFDFTQGDDK--GNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQ 476 (558)
Q Consensus 399 G~~faag~~dg~g~~~~~~g~~~--~~p~w~~~~~~~~~p~~~~~~cq~pk~ill~~G~~~~p~~~~~~~~~vq~~riG~ 476 (558)
|+||||||+||||.|+|+||++. ++|+|+.+++++.+|++++++||+||||||++| +.+||+|.|.+||||++|||+
T Consensus 395 G~sfaAGt~DGpg~f~f~qg~~~~~~~p~w~~~~~~~~~p~~~~~~cq~pKpiLl~~G-~~~p~~w~p~iv~iQi~riG~ 473 (715)
T PTZ00487 395 GYSFAAGTTDGPGAFNFKQGDNSTKGNPFWNFIGSFIAKPTPEQILCQSPKPILLDVG-MVEPIPWVPDVMPIQIMTIGQ 473 (715)
T ss_pred CcccccccCCCCCCccccCCCCCcCCCcHHHHHhhhccCCChHHhcccCCCceeecCC-CCCCCCCcCceeeeEEEEEee
Confidence 99999999999999999999865 589999999998899999999999999999999 778999999999999999999
Q ss_pred EEEEecCCccchHHHHHHHHHHHHHHhhcCCCCCCceEEEEeccCCCcccCCCHhhhccCceee-eeccCCCCCcccccc
Q 008640 477 LVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRYEV-STWFIPPTCLSNYLP 555 (558)
Q Consensus 477 l~i~~~P~E~tt~~G~rlr~~~~~~~~~~~~~~~~~~v~v~gl~Ngy~gYitT~eeY~~q~YEg-sT~~Gp~~tl~ay~~ 555 (558)
|+|+++|||+|||+|||||++|+++++. +. ++++|+|+||||+|+|||||+|||+.|+||| ||+||| |||+||+|
T Consensus 474 l~i~~~P~E~TtmaGrRlr~aV~~~~~~-~~--~~~~Vvl~G~aN~Y~~YvtT~EEY~~QrYEGaSTlyGp-~TL~ay~q 549 (715)
T PTZ00487 474 IVLVAVPGEFTTMSGRRLRNTVREIIGT-SI--ENPIVLIAGLSNTYSGYIATFEEFQVQRYEGASTVFGP-HTLGAYQQ 549 (715)
T ss_pred EEEEecCcccchhHHHHHHHHHHHHhhc-CC--CCceEEEEecccccccccCCHHHhhhhhhccccceeCc-hHHHHHHH
Confidence 9999999999999999999999999865 22 4689999999999999999999999999999 999999 99999999
Q ss_pred ccC
Q 008640 556 QLS 558 (558)
Q Consensus 556 ~~~ 558 (558)
+|.
T Consensus 550 ~~~ 552 (715)
T PTZ00487 550 EFD 552 (715)
T ss_pred HHH
Confidence 873
No 3
>PF04734 Ceramidase_alk: Neutral/alkaline non-lysosomal ceramidase; InterPro: IPR006823 This family represents a group of neutral/alkaline ceramidases found in both bacteria and eukaryotes [, , ]. They hydrolyse the sphingolipid ceramide into sphingosine and free fatty acid.; PDB: 2ZXC_A 2ZWS_A.
Probab=100.00 E-value=5.9e-133 Score=1117.73 Aligned_cols=490 Identities=61% Similarity=1.002 Sum_probs=351.2
Q ss_pred CCcccCCCCccceeecceEEEEEEEEcC-CCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEecccCCCC
Q 008640 1 MMGYANMEQIASGIHFRLRARTFIVAEP-QGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGP 79 (558)
Q Consensus 1 m~GYa~~~~~a~GvhD~L~ARAlvl~~g-~~~rva~Vs~Dl~~i~~~l~~~Vr~~l~~~~G~~i~~enIlIsATHTHSgP 79 (558)
||||+.+.|+++|||||||||||||++. +++|+|||++|+++++..++++|+++|++++|.+|+.+||+|++|||||||
T Consensus 20 m~GYa~~~q~a~GihdrLyARAfVl~~~~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~g~~y~~~nViIsaTHTHSgP 99 (674)
T PF04734_consen 20 MMGYANRSQVATGIHDRLYARAFVLEDDDGGTRVVFVSLDLLMIPQEVRDEVRERLAAKYGILYDEENVIISATHTHSGP 99 (674)
T ss_dssp EESS--SS-EEEEESS--EEEEEEEEESSS--EEEEEEESSS---HHHHHHHHHHHHHHSTTT-SGGGEEEEE--BSBEE
T ss_pred cCCCCCCCCCccceecceEEEEEEEEecCCCCEEEEEEeCccccCHHHHHHHHHHHHHhhcCCCChheEEEEeEecCCCC
Confidence 8999999999999999999999999932 379999999999999999999999999999997789999999999999999
Q ss_pred CCCccchhhcccccccchhHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEeccccccCChhhhcCCChhhhccCCCCCCC
Q 008640 80 GGYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDK 159 (558)
Q Consensus 80 ~g~~~~~~~~~~~~g~d~~y~~~lv~~iv~AI~~A~~~l~Pa~l~~g~g~~~~~~~NR~~~ay~~nP~~er~~~~g~vD~ 159 (558)
+||.++++++++..+|+++|+++|+++|++||++|+++|+|++|.++++++.++++|||..+|..||++||.+|++++||
T Consensus 100 gg~~~~~~~~~~~~gf~~~~~~~lv~gIv~aI~~A~~~L~pa~l~~g~g~~~~a~~NRs~~ay~~NP~~er~~y~g~vD~ 179 (674)
T PF04734_consen 100 GGYSHYLLYNITSGGFDPEYYDALVDGIVEAIEQAHENLQPARLGFGTGELSDANINRSPSAYLRNPAEERARYDGPVDP 179 (674)
T ss_dssp ----SSHHHHGGGTB--HHHHHHHHHHHHHHHHHHHTT-EEEEEEEEEEE--SSEEETTHHHHTT-T--T-TT-TTS---
T ss_pred CccccccccccccccchHHHHHHHHHHHHHHHHHHHHhCCcEEEEEeEEEecceeecCCchhhhcCccccccccCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEeCCCCeEEEEEeeeccccccCCCCccccCCcHHHHHHHHHHHhhccCCCCCCcccccccCCCcccccccccc
Q 008640 160 EMTLLKFVDDQWGPVGSFNWFATHGTSMSRTNSLISGDNKGAAARFMEDWFEQSNAGHSSADELVSEGIPRRVSDIISDF 239 (558)
Q Consensus 160 ~l~vL~f~~~dG~pia~L~nyA~HpT~l~~~n~lISaD~~G~a~~~lE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (558)
+|+||+|++.||+++|+|+|||||||+|+++|++||+||+|+++++||++++..
T Consensus 180 ~~~vLrf~~~dG~~ig~L~nfAvHpTsl~~~N~lIS~D~~G~aa~~lE~~~~~~-------------------------- 233 (674)
T PF04734_consen 180 EMTVLRFRDADGKPIGVLNNFAVHPTSLGNTNRLISGDNKGYAAYLLEKELGGD-------------------------- 233 (674)
T ss_dssp EEEEEEEEETTS-EEEEEEE----B-SS-TT--SBB-HHHHHHHHHHHHTT-----------------------------
T ss_pred ceeEEEEEeCCCCEEEEEEEEcccceeccCCCCeecCCcHhHHHHHHHHhhccc--------------------------
Confidence 999999999999999999999999999999999999999999999999987531
Q ss_pred ccchhHHHHHhhccCCCCCCchhhhhhhhhhhccccccccCCCeEEEeeccccCCCCCCCCCCccccCCCCCCCCCCcCC
Q 008640 240 RNNHHELLELAASFQSPPGKAATKILSVARRVRGILREAEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPCDFNHSTCG 319 (558)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fVaaf~~g~~GDvsPn~~g~~~~~~~~~c~~~~~~c~ 319 (558)
++++++|||||+|+++||||||+.|++|+|+|++||+.+|||+
T Consensus 234 -------------------------------------~~~~~~fVaaFaq~n~GDvsPN~~g~~c~~~g~~c~~~~s~c~ 276 (674)
T PF04734_consen 234 -------------------------------------LAGKPPFVAAFAQGNAGDVSPNTLGPFCEDTGLPCDFEHSTCG 276 (674)
T ss_dssp ----------------------------------------STT-EEEEE-SS-TTEES-SS-------------------
T ss_pred -------------------------------------ccCCCCeEEEEccCCcccccccccccccccccccccccccccc
Confidence 2346899999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhccccccCcceeeEEeeeccceeEeccCCCCCCccccccccccc
Q 008640 320 GKNEMCYGRGPGYPDEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCPAAMG 399 (558)
Q Consensus 320 ~~~~~~~~~gp~~~~~~e~~~~ig~~~~~~a~~l~~~~~~~l~g~v~~~~~~~~~~~~~v~~~~~~~~~~~~~tc~~a~G 399 (558)
|+.+.|+++||+. |++|++++||++|+++|++||++..++|+|+|+++|+|+||++++|..+++ +++...+||+||||
T Consensus 277 ~~~~~~~~~Gp~~-d~~~s~~iig~rq~~~A~~l~~~~~~~~~g~v~~~~~~vdm~~~~v~~~~~-~~~~~~~tc~~a~G 354 (674)
T PF04734_consen 277 GKNELCHGRGPGK-DMFESTRIIGERQFDKARELYDSASEELTGPVDSRHQYVDMSNVTVDPPFT-GDGKTVRTCPAAMG 354 (674)
T ss_dssp ----SSSTSSSTS--HHHHHHHHHHHHHHHHHHHHHHT-EEE-S-EEEEEEEEE-TT-EE-GGGT--TSS-EE-----EE
T ss_pred ccccccCCCCCCc-cchHHHHHHHHHHHHHHHHHhhccCcccCCCEeEEEEEEcCCCeEEccCCC-CCCCcCcccccccc
Confidence 9999999999988 999999999999999999999988999999999999999999999997755 45678999999999
Q ss_pred cccccccCCCCCCccccCCCC--CCCchHHHhhhhcCCCChhhhhccCCcceeecCCCCcCCCCCCCceeeeeEEEEcCE
Q 008640 400 FAFAAGTTDGPGAFDFTQGDD--KGNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQL 477 (558)
Q Consensus 400 ~~faag~~dg~g~~~~~~g~~--~~~p~w~~~~~~~~~p~~~~~~cq~pk~ill~~G~~~~p~~~~~~~~~vq~~riG~l 477 (558)
+||||||+||||.|+|+||++ +++|+|+++++++.+|++++.+||+||||||++|++++|++|.|.++|||++|||+|
T Consensus 355 ~sfaAGt~DGpg~~~f~qg~~~~~~~p~w~~v~~~~~~p~~~~~~cq~pKpiLl~~G~~~~p~~w~p~i~~~Qi~riG~l 434 (674)
T PF04734_consen 355 YSFAAGTEDGPGAFDFTQGDTEVEGNPFWDLVRDFLKKPSPEQVACQAPKPILLPTGEMNFPYPWVPNIVPIQIVRIGQL 434 (674)
T ss_dssp ----SSSSSSS-SS---SSS------HHHHHHT-SSS---HHHHHHTTT--EEE--TT--SSS-SS-SEEEEEEEEETTE
T ss_pred cccccccccCCCcccccCCCcccccchHHHHHhhhccCCCHHHHhccCCCcEEEeccccCCCcccCCceEEEEEEEEcCE
Confidence 999999999999999999998 789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCccchHHHHHHHHHHHHHHhhcCCCCCCceEEEEeccCCCcccCCCHhhhccCceee-eeccCCCCCccccccc
Q 008640 478 VILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRYEV-STWFIPPTCLSNYLPQ 556 (558)
Q Consensus 478 ~i~~~P~E~tt~~G~rlr~~~~~~~~~~~~~~~~~~v~v~gl~Ngy~gYitT~eeY~~q~YEg-sT~~Gp~~tl~ay~~~ 556 (558)
+|+++|||+|||+|||||++|++++...+. .+.+|+|+||+|+|+|||||+|||+.|+||| ||+||| |||+||+|+
T Consensus 435 ~i~~~P~E~TtmaGrRlr~~v~~~~~~~~~--~~~~vvi~g~sN~Y~~YvtT~EEY~~Q~YEg~sTl~Gp-~tl~a~~q~ 511 (674)
T PF04734_consen 435 VIVAVPGEFTTMAGRRLREAVAEALGAAGI--DDPHVVIAGLSNGYSHYVTTPEEYQVQRYEGASTLYGP-HTLAAYIQE 511 (674)
T ss_dssp EEEE-SSEE-HHHHHHHHHHHHHHHGGGT------EEEEE-SBSS---EE--HHHHHH--HHHHT-TT-T-THHHHHHHH
T ss_pred EEEEcCCcchhHHHHHHHHHHHHHHhhcCC--CceEEEEEeeccCcccccCCHHHhhcCcccccceeeCH-hHHHHHHHH
Confidence 999999999999999999999999988654 2579999999999999999999999999999 999999 999999998
Q ss_pred cC
Q 008640 557 LS 558 (558)
Q Consensus 557 ~~ 558 (558)
|+
T Consensus 512 ~~ 513 (674)
T PF04734_consen 512 FA 513 (674)
T ss_dssp HH
T ss_pred HH
Confidence 73
No 4
>COG3356 Predicted membrane protein [Function unknown]
Probab=97.59 E-value=0.00053 Score=75.96 Aligned_cols=117 Identities=21% Similarity=0.282 Sum_probs=91.6
Q ss_pred CCcccCCC---CccceeecceEEEEEEEEcCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEecccCC
Q 008640 1 MMGYANME---QIASGIHFRLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHA 77 (558)
Q Consensus 1 m~GYa~~~---~~a~GvhD~L~ARAlvl~~g~~~rva~Vs~Dl~~i~~~l~~~Vr~~l~~~~G~~i~~enIlIsATHTHS 77 (558)
++||+... +...|+ -+..+||+++|.| ++|.++|.+|.=.+..++.+++++++.+ + .+++.+.-|-||.
T Consensus 413 rvG~ar~~~~~~~~~Gl-g~~Gi~a~v~d~g-~~Rta~Vl~DsNNi~~~L~~~v~~~v~~-----l-v~~veV~TTDtH~ 484 (578)
T COG3356 413 RVGYARGKPLVDAEDGL-GPGGIRAAVVDTG-DTRTAYVLFDSNNITTELREEVRKAVRD-----L-VSEVEVVTTDTHY 484 (578)
T ss_pred cceeeccCCCCCCCCCc-CcCceEEEEEecC-CeEEEEEEEeCCCCcHHHHHHHHHHHHh-----h-hcEEEEEecCCce
Confidence 46887643 233333 4789999999998 9999999999999999999999999888 4 6799999999998
Q ss_pred CCC-CCccchhhcccccccchhHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEec
Q 008640 78 GPG-GYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELL 131 (558)
Q Consensus 78 gP~-g~~~~~~~~~~~~g~d~~y~~~lv~~iv~AI~~A~~~l~Pa~l~~g~g~~~ 131 (558)
--+ ....+ .+.|.. .-...|.+.++.++++|.++++|++++..+.++.
T Consensus 485 vn~~~~~~~-----~pvg~r-~d~~~I~~~v~~~v~~A~~dle~ve~g~~~v~v~ 533 (578)
T COG3356 485 VNGRLVLGY-----NPVGSR-EDLGEIADEVAKAVEEAEKDLEPVEVGVRTVKVK 533 (578)
T ss_pred ecccccccc-----cccccc-ccHHHHHHHHHHHHHHHHhccccceeEEEEEEEE
Confidence 654 22111 122222 3456899999999999999999999988888774
No 5
>PF09843 DUF2070: Predicted membrane protein (DUF2070); InterPro: IPR019204 This domain of unknown function is found in various bacterial and archael hypothetical proteins, as well as in prokaryotic polyketide synthase.
Probab=97.52 E-value=0.00088 Score=64.93 Aligned_cols=115 Identities=20% Similarity=0.145 Sum_probs=87.1
Q ss_pred CcccCCCCccceee---cceEEEEEEEEcCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEecccCCC
Q 008640 2 MGYANMEQIASGIH---FRLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAG 78 (558)
Q Consensus 2 ~GYa~~~~~a~Gvh---D~L~ARAlvl~~g~~~rva~Vs~Dl~~i~~~l~~~Vr~~l~~~~G~~i~~enIlIsATHTHSg 78 (558)
.||+... +.-+-| .+.-.+|++++.+ +++.++|.+|--.+.+.+.++|++++.+ + .+.+.|.-|.||+-
T Consensus 43 ~G~~~~~-~~~~~~~~lg~~gi~~~~v~~~-g~~~~lv~~DsNNm~~~lr~~i~~~~~~-----~-~d~~ev~TTDtH~~ 114 (179)
T PF09843_consen 43 VGYAEAE-PFLGEHEGLGIGGISALVVEVG-GQRSALVLADSNNMEPGLREKIREALGD-----V-VDEVEVMTTDTHFV 114 (179)
T ss_pred cceEecc-CCCCCCCCcCccccEEEEEEeC-CcEEEEEEEECCCCCHHHHHHHHHHHhh-----h-cceeEEecCcccEE
Confidence 3565433 333333 4567899999996 9999999999999999999999988887 3 57899999999996
Q ss_pred CCCCcc--chhhcccccccchhHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEe
Q 008640 79 PGGYLQ--YVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGEL 130 (558)
Q Consensus 79 P~g~~~--~~~~~~~~~g~d~~y~~~lv~~iv~AI~~A~~~l~Pa~l~~g~g~~ 130 (558)
-+-... ++.++ .-. -.+.+.+.+.+++.+|.++++|+++++.+..+
T Consensus 115 ~~~~~g~~y~~vG---~~~---~~~~i~~~~~~~~~~A~~~l~~v~~~~~~~~~ 162 (179)
T PF09843_consen 115 NGESGGNGYWPVG---PLI---PPREIIESRREAVSEAERDLEPVEVGYKEVYV 162 (179)
T ss_pred ccEECCccceecc---ccC---CHHHHHHHHHHHHHHHHhcccccEEEEEEEEE
Confidence 541111 11111 001 45778899999999999999999999999885
No 6
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=64.82 E-value=16 Score=32.59 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=38.7
Q ss_pred EEEEcCCCCEEEEEEeccCcc-cH----HHHHHHHHHHHHHhCCCCCCCcEEEEeccc
Q 008640 23 FIVAEPQGNRVVFVNLDACMA-SQ----IVKIKVIERLKARYGDLYTEKNVAISGIHT 75 (558)
Q Consensus 23 lvl~~g~~~rva~Vs~Dl~~i-~~----~l~~~Vr~~l~~~~G~~i~~enIlIsATHT 75 (558)
+++.. ..+++++|.+.+++. .. .+..+|-+.|++.+| |++++|+|.-+=.
T Consensus 49 m~f~g-~~~p~a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lg--i~~~rv~I~f~~~ 103 (116)
T PTZ00397 49 MRFGG-SHDGCCFVRVTSIGGISRSNNSSIAAAITKILASHLK--VKSERVYIEFKDC 103 (116)
T ss_pred EEECC-CCCceEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhC--cCcccEEEEEEEC
Confidence 44443 467999999997664 33 567888888999999 9999999987543
No 7
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=47.72 E-value=37 Score=29.02 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHHHHHhCCCCCCCcEEEEecccCCCCC
Q 008640 44 SQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPG 80 (558)
Q Consensus 44 ~~~l~~~Vr~~l~~~~G~~i~~enIlIsATHTHSgP~ 80 (558)
+..-..+|+++|++.++ ++.++|+|-.-+||-|=+
T Consensus 11 ~Tpsr~ei~~klA~~~~--~~~~~ivv~~~~t~fG~~ 45 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLN--VDPDLIVVFGIKTEFGGG 45 (84)
T ss_dssp SS--HHHHHHHHHHHHT--STGCCEEEEEEEESSSSS
T ss_pred CCCCHHHHHHHHHHHhC--CCCCeEEEeccEecCCCc
Confidence 34457999999999999 999999999999999876
No 8
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=45.50 E-value=26 Score=29.83 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=30.8
Q ss_pred CCEEEEEEeccC-cc----cHHHHHHHHHHHHHHhCCCCCCCcEEEEecccCC
Q 008640 30 GNRVVFVNLDAC-MA----SQIVKIKVIERLKARYGDLYTEKNVAISGIHTHA 77 (558)
Q Consensus 30 ~~rva~Vs~Dl~-~i----~~~l~~~Vr~~l~~~~G~~i~~enIlIsATHTHS 77 (558)
...+++|.+.+. += -..+...+.++|++++| |++++|+|+-+-++.
T Consensus 26 s~~~v~I~It~~~gRs~e~K~~ly~~l~~~L~~~~g--i~p~Dv~I~l~e~~~ 76 (82)
T PF14552_consen 26 SDDFVIIQITSGAGRSTEQKKALYRALAERLAEKLG--IRPEDVMIVLVENPR 76 (82)
T ss_dssp -TT-EEEEEEECS---HHHHHHHHHHHHHHHHHHH-----GGGEEEEEEEE-G
T ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHcC--CCHHHEEEEEEECCc
Confidence 566788888877 22 24567788888999999 999999999987763
No 9
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=45.40 E-value=48 Score=29.90 Aligned_cols=49 Identities=6% Similarity=0.148 Sum_probs=39.0
Q ss_pred EEEEcCCCCEEEEEEeccCcc-cH----HHHHHHHHHHHHHhCCCCCCCcEEEEecc
Q 008640 23 FIVAEPQGNRVVFVNLDACMA-SQ----IVKIKVIERLKARYGDLYTEKNVAISGIH 74 (558)
Q Consensus 23 lvl~~g~~~rva~Vs~Dl~~i-~~----~l~~~Vr~~l~~~~G~~i~~enIlIsATH 74 (558)
+.|.. +.++.++|.+=.++. .+ .+...+.+.|.+++| |+.++|+|.-.=
T Consensus 49 m~fgG-s~~P~A~~~l~siG~~~~~~n~~~s~~i~~~l~~~Lg--Ip~dRiYI~f~d 102 (113)
T PTZ00450 49 MSFQG-STAPAAYVRVEAWGEYAPSKPKMMTPRITAAITKECG--IPAERIYVFYYS 102 (113)
T ss_pred EEEcC-CCCCEEEEEEEEecCcCHHHHHHHHHHHHHHHHHHcC--CCcccEEEEEEc
Confidence 44443 477999999998885 32 567888889999999 999999998764
No 10
>PF01960 ArgJ: ArgJ family; InterPro: IPR002813 ArgJ is a bifunctional protein that catalyses the first 2.3.1.35 from EC and fifth steps 2.3.1.1 from EC in arginine biosynthesis []. The structure has been determined for glutamate N-acetyltransferase 2 (ornithine acetyltransferase; 2.3.1.35 from EC), an ArgJ-like protein from Streptomyces clavuligerus [].; GO: 0004358 glutamate N-acetyltransferase activity, 0006526 arginine biosynthetic process; PDB: 1VRA_A 1VZ7_A 1VZ8_D 2VZK_H 2V4I_A 2YEP_E 1VZ6_A 3IT4_A 3IT6_D.
Probab=38.78 E-value=1e+02 Score=33.81 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=34.5
Q ss_pred eEEEEEEEEcCCCCEEEEEEeccCcccH--HHHHHHHHHHHHHhCCCCCCCcEEEEec
Q 008640 18 LRARTFIVAEPQGNRVVFVNLDACMASQ--IVKIKVIERLKARYGDLYTEKNVAISGI 73 (558)
Q Consensus 18 L~ARAlvl~~g~~~rva~Vs~Dl~~i~~--~l~~~Vr~~l~~~~G~~i~~enIlIsAT 73 (558)
=.+|++|+.+| ..-.+-..+ +...++.+.+++.+| +++++|++++|
T Consensus 54 ~~~ravvvNSG--------nANA~TG~~G~~da~~~~~~~A~~l~--~~~~~VlvaST 101 (388)
T PF01960_consen 54 GRIRAVVVNSG--------NANACTGEQGLEDAEAMAEAVAEALG--IPPEEVLVAST 101 (388)
T ss_dssp SBEEEEEEEES--------E---S-HHHHHHHHHHHHHHHHHHHT--CHGGGEEEEEE
T ss_pred CceEEEEEccC--------CCCCCCcHHHHHHHHHHHHHHHHHhC--CCcccEEEecc
Confidence 35789999887 444454444 447788999999999 99999999999
No 11
>TIGR03196 pucD xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.
Probab=30.77 E-value=2.4e+02 Score=33.61 Aligned_cols=98 Identities=12% Similarity=0.088 Sum_probs=60.4
Q ss_pred CCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEecccCCCCCCCccchhhc-ccccccchhHHHHHHHHHH
Q 008640 30 GNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPGGYLQYVVYI-VTSLGFVRQSFDALVDGIE 108 (558)
Q Consensus 30 ~~rva~Vs~Dl~~i~~~l~~~Vr~~l~~~~G~~i~~enIlIsATHTHSgP~g~~~~~~~~-~~~~g~d~~y~~~lv~~iv 108 (558)
|.-.+.|.+-..-+.+.....+.+.+++.+| |+.++|-|...-|...|.+....---. ...+.....-.+.|.+++.
T Consensus 476 Gsv~v~v~~g~~d~GQG~~T~~aQiaAe~LG--ip~e~V~v~~~DT~~~p~~~gt~~Sr~t~~~G~Av~~Aa~~l~~kl~ 553 (768)
T TIGR03196 476 GTVKIRAHFACAECGQGFLAAAEQIAMEELG--CAAEDISIAIADTAKGPKAGSSSASRGTSMSGGAIQGACAAFAAQLK 553 (768)
T ss_pred CCeEEEEEECCCCcCCCHHHHHHHHHHHHhC--CCHHHEEEecCCCCCCCCCCCCchhhhhHhHHHHHHHHHHHHHHHHH
Confidence 5545666777777888888999999999999 999999999999988886432111000 0111233444566666665
Q ss_pred HHHHHHHhcCCceEEEEEEEEe
Q 008640 109 KSVLQAHENLRPGSIFVNKGEL 130 (558)
Q Consensus 109 ~AI~~A~~~l~Pa~l~~g~g~~ 130 (558)
+.+.+.+ ...|..+.+..+.+
T Consensus 554 ~~aa~~l-~~~~~~~~~~~g~~ 574 (768)
T TIGR03196 554 ARAAETA-GLPAEVVEAPAENL 574 (768)
T ss_pred HHHHHHh-CCChhhEEEeCCee
Confidence 5543322 33344444444433
No 12
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=29.92 E-value=1.1e+02 Score=28.93 Aligned_cols=46 Identities=22% Similarity=0.251 Sum_probs=31.2
Q ss_pred EEEEEEEEcCCCCEEEEEEeccC---cccHHHHHHHHHHHHHHhCCCCCC-CcEEEEec
Q 008640 19 RARTFIVAEPQGNRVVFVNLDAC---MASQIVKIKVIERLKARYGDLYTE-KNVAISGI 73 (558)
Q Consensus 19 ~ARAlvl~~g~~~rva~Vs~Dl~---~i~~~l~~~Vr~~l~~~~G~~i~~-enIlIsAT 73 (558)
-|+++|.++. |+|.+++- .....+..+|+++|.+. .|. .+|+||+=
T Consensus 92 ~A~vvv~~~~-----a~Vav~~~~~~~~~~~i~~~V~~~v~~~----~p~~~~V~Vs~D 141 (177)
T PF09580_consen 92 DATVVVTDDN-----AYVAVDLDFNRFNTKKIKKKVEKAVKSA----DPRIYNVYVSTD 141 (177)
T ss_pred EEEEEEECCE-----EEEEEEecccccchhHHHHHHHHHHHHh----CCCccEEEEEcC
Confidence 4777777653 77777777 55556677777777664 344 79999863
No 13
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=23.63 E-value=1.2e+02 Score=26.87 Aligned_cols=44 Identities=16% Similarity=0.170 Sum_probs=31.6
Q ss_pred CCCCEEEEEEeccCcc-cH----HHHHHHHHHHHHHhCCCCCCCcEEEEec
Q 008640 28 PQGNRVVFVNLDACMA-SQ----IVKIKVIERLKARYGDLYTEKNVAISGI 73 (558)
Q Consensus 28 g~~~rva~Vs~Dl~~i-~~----~l~~~Vr~~l~~~~G~~i~~enIlIsAT 73 (558)
|+.++.++|.+=.++. .. .+..++-+.|++++| |+.++|+|.-.
T Consensus 51 Gs~~P~a~v~l~sig~~~~~~n~~~s~~i~~~l~~~Lg--Ip~~Riyi~f~ 99 (114)
T PF01187_consen 51 GSDDPAAFVELKSIGGLDPEQNKKYSAAITEFLEEELG--IPPDRIYINFH 99 (114)
T ss_dssp TB-SS-EEEEEEESSSSSHHHHHHHHHHHHHHHHHHHT----GGGEEEEEE
T ss_pred CCCCCEEEEEEEEccCCCHHHHHHHHHHHHHHHHHHhC--CCcCceEEEEE
Confidence 3578899999988874 43 457788888899999 99999999754
No 14
>PRK12472 hypothetical protein; Provisional
Probab=23.07 E-value=3.5e+02 Score=30.60 Aligned_cols=94 Identities=18% Similarity=0.261 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhcCCceEEEEEEEEeccccccCChhhhcCCChhhhccCCCCCCCeeEE-EEEEeCCCCeEEEEEeeeccc
Q 008640 106 GIEKSVLQAHENLRPGSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDKEMTL-LKFVDDQWGPVGSFNWFATHG 184 (558)
Q Consensus 106 ~iv~AI~~A~~~l~Pa~l~~g~g~~~~~~~NR~~~ay~~nP~~er~~~~g~vD~~l~v-L~f~~~dG~pia~L~nyA~Hp 184 (558)
.++++...|.-.++|+.|.+....- .+++-|+- ..|..+- ....|+.+-+ +.+++. ++|||.-+.-|+-.
T Consensus 308 ~~~~~a~~a~l~~~pvsi~isr~tq-~lyvr~~t----~~~~~~~---~~~~~~~~e~pvti~~~-~~p~gthvfta~~~ 378 (508)
T PRK12472 308 ETAKAATDAKLALEPVSIYISRATQ-KLYVRRNT----HKPAPDG---GEVFDASIEVPVTIRDP-DRPIGTHVFTAMAR 378 (508)
T ss_pred HHHHHHHHHHhhcCCeEEEEEcccc-eEEEeccc----CCCCCCC---CccccceeeeeeEecCC-CCCcceEEEEEEcc
Confidence 4456666777788999999988877 67777763 1232110 1235777755 667775 78999999999988
Q ss_pred cccCCCCccccCCcHHHHHHHHHH
Q 008640 185 TSMSRTNSLISGDNKGAAARFMED 208 (558)
Q Consensus 185 T~l~~~n~lISaD~~G~a~~~lE~ 208 (558)
+.-+-.-..+|-|..-.+...|.+
T Consensus 379 ~~~~l~w~~vt~~~~~~a~~aldr 402 (508)
T PRK12472 379 NDAGLRWSAVTIDDGDDAKAALDR 402 (508)
T ss_pred CCCccceEEEeccchhhHHHhhhc
Confidence 755444467777776566555543
No 15
>TIGR03194 4hydrxCoA_A 4-hydroxybenzoyl-CoA reductase, alpha subunit. This model represents the largest chain, alpha, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=22.94 E-value=2.5e+02 Score=33.32 Aligned_cols=95 Identities=8% Similarity=-0.043 Sum_probs=62.4
Q ss_pred EEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEecccCCCCCCCccchhh-cccccccchhHHHHHHHHHHHHH
Q 008640 33 VVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPGGYLQYVVY-IVTSLGFVRQSFDALVDGIEKSV 111 (558)
Q Consensus 33 va~Vs~Dl~~i~~~l~~~Vr~~l~~~~G~~i~~enIlIsATHTHSgP~g~~~~~~~-~~~~~g~d~~y~~~lv~~iv~AI 111 (558)
-+.|.+-..-+.+.....+.+.+++.+| ++.|+|-|...=|...|.++..+--- ..........-.+.|.+++.+..
T Consensus 456 ~v~v~~g~~e~GqG~~T~~~qiaAe~LG--ip~d~V~v~~~DT~~~p~~~gt~~Sr~t~~~G~Av~~Aa~~l~~~l~~~a 533 (746)
T TIGR03194 456 GITLLTGAADIGQGSSTIASQVAAEVLG--VRLSRIRVISADSALTPKDNGSYSSRVTFMVGNAAIDAAEELKGVLVAAA 533 (746)
T ss_pred cEEEEEcCCCCCCCHHHHHHHHHHHHhC--CCHHhEEEEccCCCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777888888999999999999 99999999999999988744321100 00111233444566666666655
Q ss_pred HHHHhcCCceEEEEEEEEe
Q 008640 112 LQAHENLRPGSIFVNKGEL 130 (558)
Q Consensus 112 ~~A~~~l~Pa~l~~g~g~~ 130 (558)
.+.+ +..|-.+.+..|.+
T Consensus 534 a~~l-~~~~~~l~~~~g~v 551 (746)
T TIGR03194 534 AKKL-DAREEDIECAGEMF 551 (746)
T ss_pred HHHh-CCCHHHEEEECCEE
Confidence 4433 44555566666665
No 16
>PRK00111 hypothetical protein; Provisional
Probab=22.20 E-value=1.7e+02 Score=28.82 Aligned_cols=54 Identities=9% Similarity=0.229 Sum_probs=41.7
Q ss_pred EEEEEEEEcCCCCEEEEEEeccCcccHHH---HHHHHHHHHHHhCCCCCCCcEEEEecccCC
Q 008640 19 RARTFIVAEPQGNRVVFVNLDACMASQIV---KIKVIERLKARYGDLYTEKNVAISGIHTHA 77 (558)
Q Consensus 19 ~ARAlvl~~g~~~rva~Vs~Dl~~i~~~l---~~~Vr~~l~~~~G~~i~~enIlIsATHTHS 77 (558)
+++.+.|.++ +++|.+|...|..+| ..+|.++|.+.+|. -....|.|..=++||
T Consensus 106 hT~p~~ikdg----vL~V~~sSsAWAtEL~~~r~~Il~rLNe~LG~-~vV~dIri~GP~~ps 162 (180)
T PRK00111 106 HTKVEMIKDK----KLFITCDSTAWATNLRMMQRQILQVIAEKVGP-DIITELRIFGPQAPS 162 (180)
T ss_pred hcCceEEECC----EEEEEeCCHHHHHHHHhHHHHHHHHHHHHcCc-CceeEEEEECCCCCC
Confidence 4556667665 999999999988887 66788889998883 347789887776666
No 17
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=22.01 E-value=2.4e+02 Score=35.20 Aligned_cols=87 Identities=18% Similarity=0.113 Sum_probs=63.1
Q ss_pred EEEEEEEcCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEecccCCCCCCCccchhhcccccccchhH
Q 008640 20 ARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPGGYLQYVVYIVTSLGFVRQS 99 (558)
Q Consensus 20 ARAlvl~~g~~~rva~Vs~Dl~~i~~~l~~~Vr~~l~~~~G~~i~~enIlIsATHTHSgP~g~~~~~~~~~~~~g~d~~y 99 (558)
|++.|.-|| -++|+.==+-|.+.+..+|.+-.+..+| ||.+.|.++-|-|-+.|.+-. .-...+
T Consensus 975 a~V~Iy~DG----SV~v~hgGiEmGQGL~TK~~Qvaa~~l~--ip~~~v~v~~tsT~~v~na~~--Ta~S~~-------- 1038 (1257)
T KOG0430|consen 975 ALVHIYTDG----TVVVTHGGIEMGQGLNTKVAQVAAYALG--IPLSSVFVSETSTDKVPNASP--TAASVS-------- 1038 (1257)
T ss_pred eEEEEEcCC----eEEEEECcEEcccchhHHHHHHHHHHhC--CcccceEEeecccccccCCCc--cccccc--------
Confidence 556666676 6888888889999999999999999999 999999999999999987321 111111
Q ss_pred HHHHHHHHHHHHHHHHhcCCceE
Q 008640 100 FDALVDGIEKSVLQAHENLRPGS 122 (558)
Q Consensus 100 ~~~lv~~iv~AI~~A~~~l~Pa~ 122 (558)
-|..-..+.+|.++-.++|+|++
T Consensus 1039 Sd~~g~AV~~~C~~l~~RL~Pv~ 1061 (1257)
T KOG0430|consen 1039 SDMYGAAVLDACETINARLEPVK 1061 (1257)
T ss_pred cccccHHHHHHHHHHHHhhhhhh
Confidence 12233344556666677888864
No 18
>COG3252 Methenyltetrahydromethanopterin cyclohydrolase [Coenzyme metabolism]
Probab=21.36 E-value=91 Score=32.31 Aligned_cols=56 Identities=21% Similarity=0.206 Sum_probs=45.1
Q ss_pred EEEEEEEcC---------CCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEecccCCCCC
Q 008640 20 ARTFIVAEP---------QGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPG 80 (558)
Q Consensus 20 ARAlvl~~g---------~~~rva~Vs~Dl~~i~~~l~~~Vr~~l~~~~G~~i~~enIlIsATHTHSgP~ 80 (558)
||||.+.-. +.--+++++++.-.++. .+|.+-|++++| +.++||++-.--|-|--+
T Consensus 111 ARAL~lkpketyeeI~YeDdadvAvL~lEs~~LP~---e~vae~vA~ecg--V~~EnVyllvapTASivG 175 (314)
T COG3252 111 ARALALKPKETYEEIGYEDDADVAVLTLESDKLPD---EKVAEYVAKECG--VEPENVYLLVAPTASIVG 175 (314)
T ss_pred hhhhhcCcchhhhhcCcccccceEEEEEecCCCCc---hHHHHHHHHHcC--CChhheEEEeccchheee
Confidence 677777543 34578999999999997 577788899999 999999998887777655
No 19
>PF15601 Imm42: Immunity protein 42
Probab=21.29 E-value=2.6e+02 Score=26.20 Aligned_cols=67 Identities=18% Similarity=0.131 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEecccCCCCCCCccchhhcccccccchhHH-----HHHHHHHHHHHHHHHhcCCceE
Q 008640 48 KIKVIERLKARYGDLYTEKNVAISGIHTHAGPGGYLQYVVYIVTSLGFVRQSF-----DALVDGIEKSVLQAHENLRPGS 122 (558)
Q Consensus 48 ~~~Vr~~l~~~~G~~i~~enIlIsATHTHSgP~g~~~~~~~~~~~~g~d~~y~-----~~lv~~iv~AI~~A~~~l~Pa~ 122 (558)
..+|++.+++ ++++.|+.-.-.-..-|. |...+-.+++.. .+|| +.+.+.+.+|+..|.+...++.
T Consensus 62 L~~I~~~l~~-----~~p~~ViWD~~dl~~~pp-Wg~~i~~~i~~L---~~yFvt~dG~~~f~~l~~a~~~a~~~~~~v~ 132 (134)
T PF15601_consen 62 LEEIRKELKK-----FPPSEVIWDIEDLSKQPP-WGDNISPDITSL---SDYFVTSDGKDLFEVLFRALESAIEEKVDVV 132 (134)
T ss_pred HHHHHHHHhc-----CChhhheechhhcccCCC-CcccCCCCCCcH---HHHhcCcchhhHHHHHHHHHHHHHhcCCCee
Confidence 4555555555 888999876666555554 333333333321 3566 7788888888898887777765
Q ss_pred E
Q 008640 123 I 123 (558)
Q Consensus 123 l 123 (558)
|
T Consensus 133 I 133 (134)
T PF15601_consen 133 I 133 (134)
T ss_pred e
Confidence 5
No 20
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=20.43 E-value=1.5e+02 Score=27.30 Aligned_cols=46 Identities=20% Similarity=0.285 Sum_probs=31.4
Q ss_pred EEEEcCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEecccCCC
Q 008640 23 FIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAG 78 (558)
Q Consensus 23 lvl~~g~~~rva~Vs~Dl~~i~~~l~~~Vr~~l~~~~G~~i~~enIlIsATHTHSg 78 (558)
+-|+. .+.--+++..|+.....++- .|.+.|.+ - .|.|+|.|+|--
T Consensus 47 ~aF~~-~~~G~A~~~Gd~vll~~EV~-pvi~aL~~-~-------GI~vtAlHNH~l 92 (123)
T PF07485_consen 47 IAFEP-DGDGKAMVMGDFVLLEDEVN-PVISALRK-N-------GIEVTALHNHWL 92 (123)
T ss_pred EEEEE-CCCCcEEEeecEEecHHHHH-HHHHHHHH-C-------CceEEEEecccc
Confidence 34444 24446888899998887754 44455554 3 489999999973
Done!