Query 008640
Match_columns 558
No_of_seqs 169 out of 534
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 08:16:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008640.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008640hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zws_A Neutral ceramidase; pri 100.0 3E-106 9E-111 903.7 43.9 453 1-557 23-479 (646)
2 3zxn_A RSBS, anti-sigma-factor 53.9 20 0.0007 30.9 5.7 37 468-504 4-40 (123)
3 1uiz_A MIF, macrophage migrati 41.8 33 0.0011 28.9 5.0 50 23-75 48-102 (115)
4 1hfo_A Migration inhibitory fa 40.7 35 0.0012 28.5 5.0 50 23-75 47-101 (113)
5 1vra_A Arginine biosynthesis b 40.6 37 0.0013 32.7 5.6 46 19-74 89-136 (208)
6 3djh_A Macrophage migration in 37.8 37 0.0012 28.8 4.7 49 22-73 46-99 (114)
7 3fwu_A Macrophage migration in 37.0 41 0.0014 29.6 5.0 45 29-75 74-123 (133)
8 2v4i_A Glutamate N-acetyltrans 33.8 34 0.0012 32.0 4.0 46 19-74 58-105 (173)
9 3t5s_A Gilaa.00834.A, macropha 32.3 55 0.0019 28.8 5.1 43 29-73 74-121 (135)
10 2wkb_A Macrophage migration in 32.2 42 0.0014 28.8 4.2 44 30-75 54-102 (125)
11 2os5_A Acemif; macrophage migr 29.8 57 0.002 27.6 4.6 44 30-75 54-102 (119)
12 1xn9_A 30S ribosomal protein S 29.1 50 0.0017 28.1 4.0 31 48-80 32-62 (101)
13 3kan_A D-dopachrome tautomeras 28.8 58 0.002 27.8 4.5 43 29-73 52-100 (117)
14 3b64_A Macrophage migration in 27.9 57 0.0019 27.2 4.2 44 30-75 54-102 (112)
15 2v94_A RPS24, 30S ribosomal pr 27.4 53 0.0018 28.3 3.9 32 47-80 40-71 (107)
16 3fwt_A Macrophage migration in 26.8 61 0.0021 28.4 4.4 45 29-75 74-123 (133)
17 4eyb_A Beta-lactamase NDM-1; m 26.4 1E+02 0.0035 29.6 6.3 49 20-77 75-123 (270)
18 1u9d_A Hypothetical protein VC 26.2 3E+02 0.01 24.0 8.6 79 46-130 31-112 (122)
19 4dh4_A MIF; trimer, isomerase; 26.1 74 0.0025 26.7 4.6 43 29-73 53-100 (114)
20 1ywx_A 30S ribosomal protein S 26.0 63 0.0021 27.6 4.0 31 48-80 32-62 (102)
21 2xcz_A Possible ATLS1-like lig 24.1 68 0.0023 26.8 4.0 39 31-71 55-98 (115)
22 2zo4_A Metallo-beta-lactamase 24.1 1.6E+02 0.0054 28.5 7.3 52 19-77 21-73 (317)
23 2fhx_A SPM-1; metallo-beta-lac 23.6 1.6E+02 0.0055 27.2 7.0 51 19-77 29-79 (246)
24 1n62_B Carbon monoxide dehydro 22.9 1.3E+02 0.0045 34.4 7.2 95 33-130 518-613 (809)
25 2y8b_A Metallo-B-lactamase; hy 22.2 1.5E+02 0.0051 28.2 6.6 51 18-77 66-116 (265)
26 2aal_A Malonate semialdehyde d 21.0 1.1E+02 0.0038 26.2 4.8 44 30-75 63-110 (131)
27 2g1d_A 30S ribosomal protein S 20.8 51 0.0017 28.0 2.4 32 47-80 32-63 (98)
28 3abf_A 4-oxalocrotonate tautom 20.8 91 0.0031 22.8 3.7 28 46-75 19-46 (64)
No 1
>2zws_A Neutral ceramidase; prism fold and beta-sandwich fold, hydrolase, lipid metaboli secreted; HET: PLM; 1.40A {Pseudomonas aeruginosa} PDB: 2zxc_A*
Probab=100.00 E-value=2.7e-106 Score=903.73 Aligned_cols=453 Identities=43% Similarity=0.751 Sum_probs=414.6
Q ss_pred CCcccCCCCccceeecceEEEEEEEEcCC-CCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEecccCCCC
Q 008640 1 MMGYANMEQIASGIHFRLRARTFIVAEPQ-GNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGP 79 (558)
Q Consensus 1 m~GYa~~~~~a~GvhD~L~ARAlvl~~g~-~~rva~Vs~Dl~~i~~~l~~~Vr~~l~~~~G~~i~~enIlIsATHTHSgP 79 (558)
||||+.+.|+++|||||||||||||++++ ++|++||++|+++++..++++|+++|++++|++|+.+||+|++|||||||
T Consensus 23 m~GYa~~~q~a~Gihd~L~aRA~vl~d~~~~~rvv~Vs~D~~~~~~~v~~~V~~~L~~~~g~~~~~~nV~isaTHTHSgP 102 (646)
T 2zws_A 23 MMGYSSLEQKTAGIHMRQWARAFVIEEAASGRRLVYVNTDLGMIFQAVHLKVLARLKAKYPGVYDENNVMLAATHTHSGP 102 (646)
T ss_dssp EESSCCTTCEEEEESSCCEEEEEEEEESSSCCEEEEEEESSSCCCHHHHHHHHHHHHHHSTTTCCTTTEEEEECCBSBEE
T ss_pred ecCccccCccccceecceEEEEEEEEcCCCCCEEEEEEECcccCCHHHHHHHHHHHHHHhCCCCChhHEEEEeeeeCCCC
Confidence 79999999999999999999999999863 79999999999999999999999999999998899999999999999999
Q ss_pred CCCccchhhcccccccchhHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEeccccccCChhhhcCCChhhhccCCCCCCC
Q 008640 80 GGYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDK 159 (558)
Q Consensus 80 ~g~~~~~~~~~~~~g~d~~y~~~lv~~iv~AI~~A~~~l~Pa~l~~g~g~~~~~~~NR~~~ay~~nP~~er~~~~g~vD~ 159 (558)
++|+++.+++++..+|+++|+++|+++|++||++|+++|+|++|.|+++++.++++|||+.+|++|| ||.+|++++||
T Consensus 103 ~g~~~~~l~~~~~~g~~~~y~~~lv~~iv~AI~~A~~~l~pa~l~~g~g~~~~~~~NRs~~ay~~NP--er~~~~g~vD~ 180 (646)
T 2zws_A 103 GGFSHYAMYNLSVLGFQEKTFNAIVDGIVRSIERAQARLQPGRLFYGSGELRNASRNRSLLSHLKNP--DIAGYEDGIDP 180 (646)
T ss_dssp CCCCSSHHHHGGGTBCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEECCSSEEESCHHHHTTCS--CCTTCTTSCCC
T ss_pred cccccccccccccccccHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEEEeCcceecCChhhhhcCc--cccccCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred eeEEEEEEeCCCCeEEEEEeeeccccccCCCCccccCCcHHHHHHHHHHHhhccCCCCCCcccccccCCCcccccccccc
Q 008640 160 EMTLLKFVDDQWGPVGSFNWFATHGTSMSRTNSLISGDNKGAAARFMEDWFEQSNAGHSSADELVSEGIPRRVSDIISDF 239 (558)
Q Consensus 160 ~l~vL~f~~~dG~pia~L~nyA~HpT~l~~~n~lISaD~~G~a~~~lE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (558)
+|+||+|++.+|+++|+|+|||||||+|+++|++||+||+|++++.||+.+++
T Consensus 181 ~~~vL~f~~~dg~~ig~l~~fA~HpTsl~~~N~liS~D~~G~a~~~lE~~~~~--------------------------- 233 (646)
T 2zws_A 181 QMSVLSFVDANGELAGAISWFPVHSTSMTNANHLISPDNKGYASYHWEHDVSR--------------------------- 233 (646)
T ss_dssp EEEEEEEEETTCCEEEEEEECCCCBCSSCTTCCEEBCHHHHHHHHHHHHTTCC---------------------------
T ss_pred ceEEEEEEeCCCCEEEEEEEEccCceecCCCCCeecCccHHHHHHHHHHHhCC---------------------------
Confidence 99999999999999999999999999999999999999999999999997532
Q ss_pred ccchhHHHHHhhccCCCCCCchhhhhhhhhhhccccccccCCCeEEEeeccccCCCCCCCCCCccccCCCCCCCCCCcCC
Q 008640 240 RNNHHELLELAASFQSPPGKAATKILSVARRVRGILREAEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPCDFNHSTCG 319 (558)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fVaaf~~g~~GDvsPn~~g~~~~~~~~~c~~~~~~c~ 319 (558)
+++||++|+|||+||+|||+.
T Consensus 234 ----------------------------------------~~~fva~F~qg~~GDvsP~~~------------------- 254 (646)
T 2zws_A 234 ----------------------------------------KSGFVAAFAQTNAGNLSPNLN------------------- 254 (646)
T ss_dssp ----------------------------------------STTCEEEEECSSCTTEEECCC-------------------
T ss_pred ----------------------------------------CCCeEEEEeccCcccCCcccc-------------------
Confidence 357999999999999999975
Q ss_pred CCCcccccCCCCCCCchhHHHHHHHHHHHHHHHHHhhccccccCcceeeEEeeeccceeEeccCCCCCCccccccccccc
Q 008640 320 GKNEMCYGRGPGYPDEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCPAAMG 399 (558)
Q Consensus 320 ~~~~~~~~~gp~~~~~~e~~~~ig~~~~~~a~~l~~~~~~~l~g~v~~~~~~~~~~~~~v~~~~~~~~~~~~~tc~~a~G 399 (558)
.|+++||++ ++++++++||++|+++|+++|++..++++|+|+++|+|+||+++++.++.+ +++..+||+++||
T Consensus 255 ----~~~~~Gp~~-~~~e~~~~iG~~~~~~a~~~l~~~~~~l~g~v~~~~~~vdm~~~~v~~~~~--~g~~~~tc~~a~g 327 (646)
T 2zws_A 255 ----LKPGSGPFD-NEFDNTREIGLRQFAKAYEIAGQAQEEVLGELDSRFRFVDFTRLPIRPEFT--DGQPRQLCTAAIG 327 (646)
T ss_dssp ----CCTTCCTTS-CHHHHHHHHHHHHHHHHHHHHHHCCEEECSCEEEEEEEEECTTCEECGGGS--SSSCEECCCCCEE
T ss_pred ----ccccCCCCc-ccHHHHHHHHHHHHHHHHHHHhhccccccCCcceEEEEecCcceeeecccC--Ccccceechhhhc
Confidence 356789987 999999999999999999999887788999999999999999999988755 3368899999999
Q ss_pred ccccccc-CCCCCCccccCCCCCCCchHHHhhhhcCCC-ChhhhhccCCcceeecCCCCcCCCCCCCceeeeeEEEEcCE
Q 008640 400 FAFAAGT-TDGPGAFDFTQGDDKGNPFWRLVRDLLKKP-DKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQL 477 (558)
Q Consensus 400 ~~faag~-~dg~g~~~~~~g~~~~~p~w~~~~~~~~~p-~~~~~~cq~pk~ill~~G~~~~p~~~~~~~~~vq~~riG~l 477 (558)
++|+||+ +||||.++|+|+ + +|+|+.+++++.+| ++++.+||+||+||+++|+ ++|++|.+.+++||+||||++
T Consensus 328 ~s~aag~~~dgpg~~~f~q~-~--~~~w~~~~~~l~~~~~~~~~~cq~~k~ill~~g~-~~p~~~~~~~v~vqilriGdl 403 (646)
T 2zws_A 328 TSLAAGSTEDGPGPLGLEEG-N--NPFLSALGGLLTGVPPQELVQCQAEKTILADTGN-KKPYPWTPTVLPIQMFRIGQL 403 (646)
T ss_dssp C---------------CCSS-C--CHHHHHTTCSCCCCCCHHHHHHTTTCCEEECCTT-CSSSCSSCSEEEEEEEEETTE
T ss_pred hhhhcCCcccCCCccccccc-c--chhhhhhhhhhccccchhHHhhccCcceecccCC-CCCcccccceEEEEEEEECCE
Confidence 9999999 999999999999 4 99999999988888 7999999999999999998 899999999999999999999
Q ss_pred EEEecCCccchHHHHHHHHHHHHHHhhcCCCCCCceEEEEeccCCCcccCCCHhhhccCceee-eeccCCCCCccccccc
Q 008640 478 VILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRYEV-STWFIPPTCLSNYLPQ 556 (558)
Q Consensus 478 ~i~~~P~E~tt~~G~rlr~~~~~~~~~~~~~~~~~~v~v~gl~Ngy~gYitT~eeY~~q~YEg-sT~~Gp~~tl~ay~~~ 556 (558)
+|+++|||+|+|+|+|||+++++.+.+. + .++|+|+||+|+|+|||||+|||+.|+||+ ||+||| +|+++|+|+
T Consensus 404 ~iv~~PgE~tt~~G~rlr~~~~~~~~~~-~---~~~v~v~GyaN~y~gYi~T~EeY~~q~YEg~sT~~gp-~tl~~~i~~ 478 (646)
T 2zws_A 404 ELLGAPAEFTVMAGVRIRRAVQAASEAA-G---IRHVVFNGYANAYASYVTTREEYAAQEYEGGSTLYGP-WTQAAYQQL 478 (646)
T ss_dssp EEEECSSEECHHHHHHHHHHHHHHHGGG-T---CCEEEEECSBSSCCCEECCHHHHHHCCTTTTSCTTCT-THHHHHHHH
T ss_pred EEEecCcHHHHHHHHHHHHHHHhhhccC-C---CceEEEEecCCCCCCccCCHHHHhcCCccceeeecCC-ChHHHHHHH
Confidence 9999999999999999999999887653 3 379999999999999999999999999999 999999 999999998
Q ss_pred c
Q 008640 557 L 557 (558)
Q Consensus 557 ~ 557 (558)
+
T Consensus 479 ~ 479 (646)
T 2zws_A 479 F 479 (646)
T ss_dssp H
T ss_pred H
Confidence 6
No 2
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=53.85 E-value=20 Score=30.88 Aligned_cols=37 Identities=11% Similarity=0.251 Sum_probs=31.5
Q ss_pred eeeEEEEcCEEEEecCCccchHHHHHHHHHHHHHHhh
Q 008640 468 PIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTT 504 (558)
Q Consensus 468 ~vq~~riG~l~i~~~P~E~tt~~G~rlr~~~~~~~~~ 504 (558)
.+.++++++..++++.||+.......|++.+.+.+..
T Consensus 4 s~pii~~~~vlvv~l~G~lD~~~a~~l~~~ll~~i~~ 40 (123)
T 3zxn_A 4 RVPILKVDDYWVVAIEETLHDQSVIQFKEELLHNITG 40 (123)
T ss_dssp CSCEEEETTEEEEECCCCC-CHHHHHHHHHHHHHHTS
T ss_pred cccEEEECCEEEEEEeEeeCHHHHHHHHHHHHHHHHh
Confidence 3457899999999999999999999999999887754
No 3
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=41.77 E-value=33 Score=28.87 Aligned_cols=50 Identities=8% Similarity=0.004 Sum_probs=37.5
Q ss_pred EEEEcCCCCEEEEEEeccCc-ccHH----HHHHHHHHHHHHhCCCCCCCcEEEEeccc
Q 008640 23 FIVAEPQGNRVVFVNLDACM-ASQI----VKIKVIERLKARYGDLYTEKNVAISGIHT 75 (558)
Q Consensus 23 lvl~~g~~~rva~Vs~Dl~~-i~~~----l~~~Vr~~l~~~~G~~i~~enIlIsATHT 75 (558)
+++.. ...+.++|.+.+.. ...+ +..++-+.|.+.+| +++++|+|.-+-.
T Consensus 48 ~~~~g-~~~~~~~v~i~~~~g~~~eqk~~l~~~i~~~l~~~lg--i~~~~v~I~~~e~ 102 (115)
T 1uiz_A 48 MSFGD-STDPCAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLN--IPANRVYINYYDL 102 (115)
T ss_dssp EEETT-BCSSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHC--CCGGGEEEEEEEC
T ss_pred eEECC-CCCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhC--cCcceEEEEEEEC
Confidence 34443 36788999999776 5544 67777888888999 9999999986544
No 4
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=40.68 E-value=35 Score=28.53 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=37.5
Q ss_pred EEEEcCCCCEEEEEEeccCc-ccHH----HHHHHHHHHHHHhCCCCCCCcEEEEeccc
Q 008640 23 FIVAEPQGNRVVFVNLDACM-ASQI----VKIKVIERLKARYGDLYTEKNVAISGIHT 75 (558)
Q Consensus 23 lvl~~g~~~rva~Vs~Dl~~-i~~~----l~~~Vr~~l~~~~G~~i~~enIlIsATHT 75 (558)
+++.. ...+.++|.+-+.. ...+ +..++-+.|.+.+| +++++|+|.-+-.
T Consensus 47 ~~~~g-~~~~~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lg--i~~~~v~I~~~e~ 101 (113)
T 1hfo_A 47 LSFGG-STNPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLG--IPKNRMYIHFVNL 101 (113)
T ss_dssp EEETT-BCSSCEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHC--CCGGGEEEEEEEC
T ss_pred EEecC-CCCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhC--cCcCeEEEEEEEC
Confidence 44543 35788999998776 5544 67777888888999 9999999986543
No 5
>1vra_A Arginine biosynthesis bifunctional protein ARGJ; 10175521, S genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans}
Probab=40.59 E-value=37 Score=32.69 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=37.0
Q ss_pred EEEEEEEEcCCCCEEEEEEeccCcccH--HHHHHHHHHHHHHhCCCCCCCcEEEEecc
Q 008640 19 RARTFIVAEPQGNRVVFVNLDACMASQ--IVKIKVIERLKARYGDLYTEKNVAISGIH 74 (558)
Q Consensus 19 ~ARAlvl~~g~~~rva~Vs~Dl~~i~~--~l~~~Vr~~l~~~~G~~i~~enIlIsATH 74 (558)
.+||+|+.+| ..-.+...+ +-..++.+.+++.+| +++++|++++|=
T Consensus 89 ~~rAvvvNSG--------nANA~TG~~G~~da~~~a~~~A~~lg--i~~~~VlvaSTG 136 (208)
T 1vra_A 89 KLQAMIVNSG--------IANACTGKRGLDDAYTMRAVGAETFH--IPEHYVAVTSTG 136 (208)
T ss_dssp EEEEEEEEEE--------ECCCSCHHHHHHHHHHHHHHHHHHHT--SCGGGEEEEEEE
T ss_pred ceEEEEEccC--------CccccccHHHHHHHHHHHHHHHHHhC--CChhHEEEeCCc
Confidence 5799999887 455555543 457888999999999 999999999983
No 6
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=37.76 E-value=37 Score=28.76 Aligned_cols=49 Identities=10% Similarity=0.042 Sum_probs=38.1
Q ss_pred EEEEEcCCCCEEEEEEeccCcc-c----HHHHHHHHHHHHHHhCCCCCCCcEEEEec
Q 008640 22 TFIVAEPQGNRVVFVNLDACMA-S----QIVKIKVIERLKARYGDLYTEKNVAISGI 73 (558)
Q Consensus 22 Alvl~~g~~~rva~Vs~Dl~~i-~----~~l~~~Vr~~l~~~~G~~i~~enIlIsAT 73 (558)
.|.+.. +.++.+++.+-.++. . ..+..++-+.|.+++| |++++|+|.-+
T Consensus 46 ~m~fgG-s~~P~a~~~v~sig~~~~~~n~~~s~~i~~~l~~~Lg--i~~~riyI~f~ 99 (114)
T 3djh_A 46 LMAFGG-SSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLR--ISPDRVYINYY 99 (114)
T ss_dssp EEEETT-BCSSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHC--CCGGGEEEEEE
T ss_pred eEEEcC-cCCCEEEEEEEEccCCCHHHHHHHHHHHHHHHHHHhC--cCcceEEEEEE
Confidence 455543 468899999998875 3 3467888888899999 99999999753
No 7
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=36.98 E-value=41 Score=29.59 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=37.6
Q ss_pred CCCEEEEEEeccCccc-----HHHHHHHHHHHHHHhCCCCCCCcEEEEeccc
Q 008640 29 QGNRVVFVNLDACMAS-----QIVKIKVIERLKARYGDLYTEKNVAISGIHT 75 (558)
Q Consensus 29 ~~~rva~Vs~Dl~~i~-----~~l~~~Vr~~l~~~~G~~i~~enIlIsATHT 75 (558)
..++.++|.+-.++.- ..+..++.+.|++++| |++++|+|.-+=.
T Consensus 74 s~dP~a~v~i~sig~~~~e~n~~~s~~i~~~l~~~Lg--I~~~riyI~f~d~ 123 (133)
T 3fwu_A 74 STDPVACVRVEALGGYGPSEPEKVTSIVTAAITKECG--IVADRIFVLYFSP 123 (133)
T ss_dssp BCSSCEEEEEECTTCCCTTHHHHHHHHHHHHHHHHHC--CCGGGEEEEEECC
T ss_pred cCCCEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhC--cChhhEEEEEEEH
Confidence 3578899999877643 4678899999999999 9999999987766
No 8
>2v4i_A Glutamate N-acetyltransferase 2 alpha chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_A* 2w4n_A* 2yep_A*
Probab=33.77 E-value=34 Score=32.00 Aligned_cols=46 Identities=20% Similarity=0.209 Sum_probs=35.4
Q ss_pred EEEEEEEEcCCCCEEEEEEeccCccc--HHHHHHHHHHHHHHhCCCCCCCcEEEEecc
Q 008640 19 RARTFIVAEPQGNRVVFVNLDACMAS--QIVKIKVIERLKARYGDLYTEKNVAISGIH 74 (558)
Q Consensus 19 ~ARAlvl~~g~~~rva~Vs~Dl~~i~--~~l~~~Vr~~l~~~~G~~i~~enIlIsATH 74 (558)
.+|++|+.+| ..-.+... .+-..++.+.+++.+| +++++|++++|=
T Consensus 58 ~~rAvvvNSG--------nANA~TG~~G~~da~~~~~~~A~~lg--~~~~~Vlv~STG 105 (173)
T 2v4i_A 58 QARGVVVLAR--------NANVATGLEGEENAREVREAVARALG--LPEGEMLIASTG 105 (173)
T ss_dssp BCCEEEEEES--------CCCCSCHHHHHHHHHHHHHHHHHHTT--CCGGGEEEEEES
T ss_pred ceEEEEEcCC--------CccccccHHHHHHHHHHHHHHHHHhC--CCchhEEEecCc
Confidence 4688888887 33444443 3457888999999999 999999999984
No 9
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=32.30 E-value=55 Score=28.84 Aligned_cols=43 Identities=16% Similarity=0.123 Sum_probs=35.3
Q ss_pred CCCEEEEEEeccCc-cc----HHHHHHHHHHHHHHhCCCCCCCcEEEEec
Q 008640 29 QGNRVVFVNLDACM-AS----QIVKIKVIERLKARYGDLYTEKNVAISGI 73 (558)
Q Consensus 29 ~~~rva~Vs~Dl~~-i~----~~l~~~Vr~~l~~~~G~~i~~enIlIsAT 73 (558)
..++.++|.+-+++ +. ..+..++.+.|.+++| |++++|+|.-.
T Consensus 74 s~dp~a~v~i~sig~~t~e~n~~~s~~i~~~l~~~Lg--i~~~riyI~f~ 121 (135)
T 3t5s_A 74 STDLCCFVDFYCIGVISQAKNPSISAAITGCLTQHFK--VKPERVYISFN 121 (135)
T ss_dssp BCCSCEEEEEECCC-----CCHHHHHHHHHHHHHHHC--CCGGGEEEEEE
T ss_pred ccceEEEEEEEEEEEEeccCCchHHHHHHHHHHHhcc--cCccEEEEEec
Confidence 46889999999876 33 4678899999999999 99999999764
No 10
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=32.15 E-value=42 Score=28.80 Aligned_cols=44 Identities=16% Similarity=0.150 Sum_probs=33.5
Q ss_pred CCEEEEEEeccCc-cc----HHHHHHHHHHHHHHhCCCCCCCcEEEEeccc
Q 008640 30 GNRVVFVNLDACM-AS----QIVKIKVIERLKARYGDLYTEKNVAISGIHT 75 (558)
Q Consensus 30 ~~rva~Vs~Dl~~-i~----~~l~~~Vr~~l~~~~G~~i~~enIlIsATHT 75 (558)
..+.++|.+.++. .. ..+..++-+.|.+.+| +++++|+|.-+-.
T Consensus 54 ~dp~~~v~I~~~~g~t~eqk~~l~~~i~~~l~~~lg--i~~~~v~I~~~e~ 102 (125)
T 2wkb_A 54 NEGYCFVRLTSIGGINRSNNSLLADKITKILSNHLS--VKPRRVYIEFRDC 102 (125)
T ss_dssp CSSCEEEEEECC-----CTHHHHHHHHHHHHHHHHC--CCGGGEEEEEEC-
T ss_pred CCCcEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhC--cCcceEEEEEEEC
Confidence 5678999998775 33 3578888888999999 9999999987544
No 11
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=29.82 E-value=57 Score=27.58 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=35.1
Q ss_pred CCEEEEEEeccCc-ccHH----HHHHHHHHHHHHhCCCCCCCcEEEEeccc
Q 008640 30 GNRVVFVNLDACM-ASQI----VKIKVIERLKARYGDLYTEKNVAISGIHT 75 (558)
Q Consensus 30 ~~rva~Vs~Dl~~-i~~~----l~~~Vr~~l~~~~G~~i~~enIlIsATHT 75 (558)
..+.++|.+.+.. ...+ +..++-+.|.+.+| +++++|+|.-+-.
T Consensus 54 ~~~~~~i~I~~~~g~~~eqk~~l~~~i~~~l~~~lg--i~~~~v~I~~~e~ 102 (119)
T 2os5_A 54 RNPVAVIKVESIGALSADDNIRHTQKITQFCQDTLK--LPKDKVIITYFDL 102 (119)
T ss_dssp CSSCEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHC--CCGGGEEEEEEEC
T ss_pred CCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhC--cCcccEEEEEEEC
Confidence 5688999999776 5544 67777788888999 9999999987654
No 12
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=29.11 E-value=50 Score=28.11 Aligned_cols=31 Identities=23% Similarity=0.180 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEecccCCCCC
Q 008640 48 KIKVIERLKARYGDLYTEKNVAISGIHTHAGPG 80 (558)
Q Consensus 48 ~~~Vr~~l~~~~G~~i~~enIlIsATHTHSgP~ 80 (558)
..+||++|++.++ .+++.|+|-.-.||-|-+
T Consensus 32 k~eirekLAk~~~--~~~~~Vvv~~~~t~fG~g 62 (101)
T 1xn9_A 32 RNDVRNKLAAMLN--APLELLVIQRIKTEYGMQ 62 (101)
T ss_dssp HHHHHHHHHHHTT--CCTTTEEEEEEEECSSSS
T ss_pred HHHHHHHHHHHHC--CCCCEEEEEeeEecCCCc
Confidence 6999999999999 899999999999999876
No 13
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=28.79 E-value=58 Score=27.79 Aligned_cols=43 Identities=7% Similarity=0.040 Sum_probs=34.9
Q ss_pred CCCEEEEEEeccCccc------HHHHHHHHHHHHHHhCCCCCCCcEEEEec
Q 008640 29 QGNRVVFVNLDACMAS------QIVKIKVIERLKARYGDLYTEKNVAISGI 73 (558)
Q Consensus 29 ~~~rva~Vs~Dl~~i~------~~l~~~Vr~~l~~~~G~~i~~enIlIsAT 73 (558)
+.++.+++.+..++.. ..+..++-+.|++++| |+.++|+|.-+
T Consensus 52 s~~P~a~~~v~siG~~~~~~~n~~~s~~i~~~l~~~Lg--i~~~RiyI~f~ 100 (117)
T 3kan_A 52 STEPCAQLSISSIGVVGTAEDNRSHSAHFFEFLTKELA--LGQDRILIRFF 100 (117)
T ss_dssp BCSSCEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHT--CCGGGEEEEEE
T ss_pred CCCceEEEEEEEecCCCcHHHHHHHHHHHHHHHHHHhC--cCcCeEEEEEE
Confidence 4578899988887653 3567888889999999 99999999754
No 14
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=27.91 E-value=57 Score=27.24 Aligned_cols=44 Identities=14% Similarity=0.108 Sum_probs=35.3
Q ss_pred CCEEEEEEeccCc-ccH----HHHHHHHHHHHHHhCCCCCCCcEEEEeccc
Q 008640 30 GNRVVFVNLDACM-ASQ----IVKIKVIERLKARYGDLYTEKNVAISGIHT 75 (558)
Q Consensus 30 ~~rva~Vs~Dl~~-i~~----~l~~~Vr~~l~~~~G~~i~~enIlIsATHT 75 (558)
.++.++|.+.+.. ... .+..++-+.|++.+| +++++|+|.-+-.
T Consensus 54 ~~~~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lg--i~~~~v~I~~~e~ 102 (112)
T 3b64_A 54 TDPVACVRVEALGGYGPSEPEKVTSIVTAAITKECG--IVADRIFVLYFSP 102 (112)
T ss_dssp CSSCEEEEEECTTCCCTTHHHHHHHHHHHHHHHHHC--CCGGGEEEEEECC
T ss_pred CCCEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhC--cCcceEEEEEEEh
Confidence 5788999998775 443 478888888999999 9999999987644
No 15
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=27.39 E-value=53 Score=28.26 Aligned_cols=32 Identities=19% Similarity=0.137 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEecccCCCCC
Q 008640 47 VKIKVIERLKARYGDLYTEKNVAISGIHTHAGPG 80 (558)
Q Consensus 47 l~~~Vr~~l~~~~G~~i~~enIlIsATHTHSgP~ 80 (558)
-..+|+++|++.++ .+++.|+|-.-.||-|-+
T Consensus 40 sk~eirekLA~~~~--~~~d~Vvv~~~~T~fG~g 71 (107)
T 2v94_A 40 SRKDVKGKLVAMLD--LNPETTVIQYIRSYFGSY 71 (107)
T ss_dssp CHHHHHHHHHHHHT--CCGGGEEEEEEECCTTCS
T ss_pred CHHHHHHHHHHHHC--CCCCEEEEEeeEecCCCc
Confidence 37899999999999 899999999999999876
No 16
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=26.79 E-value=61 Score=28.40 Aligned_cols=45 Identities=7% Similarity=0.173 Sum_probs=35.3
Q ss_pred CCCEEEEEEeccCc-cc----HHHHHHHHHHHHHHhCCCCCCCcEEEEeccc
Q 008640 29 QGNRVVFVNLDACM-AS----QIVKIKVIERLKARYGDLYTEKNVAISGIHT 75 (558)
Q Consensus 29 ~~~rva~Vs~Dl~~-i~----~~l~~~Vr~~l~~~~G~~i~~enIlIsATHT 75 (558)
+.++.++|.+..++ +. ..+..++.+.|++++| |++++|+|.-+=.
T Consensus 74 s~dP~a~v~v~sig~~~~e~n~~~s~~i~~~l~~~Lg--I~~~rvyI~f~d~ 123 (133)
T 3fwt_A 74 STAPAAYVRVESWGEYAPSKPKMMTPRIAAAITKECG--IPAERIYVFYYST 123 (133)
T ss_dssp BCSSCEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHC--CCGGGEEEEEEEE
T ss_pred CCCCeEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhC--cChhhEEEEEEEh
Confidence 35788999988854 33 3567888888999999 9999999986543
No 17
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=26.37 E-value=1e+02 Score=29.56 Aligned_cols=49 Identities=16% Similarity=0.256 Sum_probs=32.7
Q ss_pred EEEEEEEcCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEecccCC
Q 008640 20 ARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHA 77 (558)
Q Consensus 20 ARAlvl~~g~~~rva~Vs~Dl~~i~~~l~~~Vr~~l~~~~G~~i~~enIlIsATHTHS 77 (558)
+.++++.++ +.+ |.+|..+ .....+++.+.|++..+ .+...|+ .||.|.
T Consensus 75 ~N~ylv~~~--~~~--ilIDtg~-~~~~~~~l~~~i~~~~~--~~I~~Ii--~TH~H~ 123 (270)
T 4eyb_A 75 SNGLIVRDG--GRV--LVVDTAW-TDDQTAQILNWIKQEIN--LPVALAV--VTHAHQ 123 (270)
T ss_dssp EEEEEEEET--TEE--EEESCCS-SHHHHHHHHHHHHHHTC--CCEEEEE--ECSSSH
T ss_pred eEEEEEEEC--CEE--EEEeCCC-CHHHHHHHHHHHHHhcC--CceEEEE--eCCCCh
Confidence 557777663 333 4568764 56667788888888778 6655555 578874
No 18
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=26.19 E-value=3e+02 Score=24.01 Aligned_cols=79 Identities=13% Similarity=0.034 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEec---ccCCCCCCCccchhhcccccccchhHHHHHHHHHHHHHHHHHhcCCceE
Q 008640 46 IVKIKVIERLKARYGDLYTEKNVAISGI---HTHAGPGGYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGS 122 (558)
Q Consensus 46 ~l~~~Vr~~l~~~~G~~i~~enIlIsAT---HTHSgP~g~~~~~~~~~~~~g~d~~y~~~lv~~iv~AI~~A~~~l~Pa~ 122 (558)
.+...+.+.|++.++ .+.+++-|-.. .-|.| .+ .+. -.+.-.+-.++-.+.++..|.+++.++....+-+.
T Consensus 31 ~lS~~Lid~La~i~~--~~~e~fTle~i~s~~i~~G-~~-MP~--VeV~~fgRt~EqK~~la~~IT~av~~~~~~~e~V~ 104 (122)
T 1u9d_A 31 SLVPTLLNELSSLLS--TARNAFTFELINTQYFAEG-GV-YPM--VEVLWFGREQQTQDQIAQVITDQIRQLLGADSHLA 104 (122)
T ss_dssp HHHHHHHHHHHHHHT--CCGGGCEEEECCCCCCCTT-CC-CCE--EEEEESCCCHHHHHHHHHHHHHHHHHHHCTTCCCE
T ss_pred HHhHHHHHHHHHHHC--CCcccEEEEEeeeEEEecC-CC-CCE--EEEEEcCCCHHHHHHHHHHHHHHHHHhCCCCceEE
Confidence 345566677788888 89999876554 44556 21 111 11111245778889999999999999955555566
Q ss_pred EEEEEEEe
Q 008640 123 IFVNKGEL 130 (558)
Q Consensus 123 l~~g~g~~ 130 (558)
+-+..-.-
T Consensus 105 Vif~el~~ 112 (122)
T 1u9d_A 105 VVFIPLQR 112 (122)
T ss_dssp EEEEECCG
T ss_pred EEEEecCH
Confidence 66654443
No 19
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=26.12 E-value=74 Score=26.70 Aligned_cols=43 Identities=5% Similarity=0.108 Sum_probs=34.6
Q ss_pred CCCEEEEEEeccCc-ccH----HHHHHHHHHHHHHhCCCCCCCcEEEEec
Q 008640 29 QGNRVVFVNLDACM-ASQ----IVKIKVIERLKARYGDLYTEKNVAISGI 73 (558)
Q Consensus 29 ~~~rva~Vs~Dl~~-i~~----~l~~~Vr~~l~~~~G~~i~~enIlIsAT 73 (558)
..++.++|.+.+++ +.. .+..++-+.|.+.+| +++++|+|.-.
T Consensus 53 s~~p~a~v~i~~ig~~~~e~~~~l~~~i~~~l~~~Lg--i~~~riyI~f~ 100 (114)
T 4dh4_A 53 SSDPCAFIRVASIGGITSSTNCKIAAALSAACERHLG--VPKNRIYTTFT 100 (114)
T ss_dssp BCSCCEEEEEEEESCCCHHHHHHHHHHHHHHHHHHHC--CCGGGEEEEEE
T ss_pred cCCCeEEEEEEEEcCCCHHHHHHHHHHHHHHHHHHhC--cCcccEEEEEE
Confidence 46789999999886 443 567788888889999 99999999643
No 20
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=26.00 E-value=63 Score=27.59 Aligned_cols=31 Identities=13% Similarity=0.055 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEecccCCCCC
Q 008640 48 KIKVIERLKARYGDLYTEKNVAISGIHTHAGPG 80 (558)
Q Consensus 48 ~~~Vr~~l~~~~G~~i~~enIlIsATHTHSgP~ 80 (558)
..+||++|++.++ .+++.|+|-.-.||-|-+
T Consensus 32 k~eirekLAk~~~--~~~d~Vvv~~~~T~fG~g 62 (102)
T 1ywx_A 32 IKDVKMKLVAVLN--ANKQVLVVDTLDQIFGKL 62 (102)
T ss_dssp HHHHHHHHHHHHT--SCSTTEEEEEEEECSSSS
T ss_pred HHHHHHHHHHHHC--CCCCEEEEEccEecCCCc
Confidence 6999999999999 899999999999999876
No 21
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=24.12 E-value=68 Score=26.82 Aligned_cols=39 Identities=15% Similarity=0.225 Sum_probs=0.0
Q ss_pred CEEEEEEeccCc-----ccHHHHHHHHHHHHHHhCCCCCCCcEEEE
Q 008640 31 NRVVFVNLDACM-----ASQIVKIKVIERLKARYGDLYTEKNVAIS 71 (558)
Q Consensus 31 ~rva~Vs~Dl~~-----i~~~l~~~Vr~~l~~~~G~~i~~enIlIs 71 (558)
.+.++|.+.+.. --..+..++-+.|.+.+| +++++|+|.
T Consensus 55 ~~~~~v~i~~~~g~t~eqk~~l~~~i~~~l~~~lg--i~~~~v~I~ 98 (115)
T 2xcz_A 55 EPTCYVEVKSIGALDGSRTQEVSELVCGHIEQNLG--IPADRIYIG 98 (115)
T ss_dssp SSCEEEEEEESSCCCTTHHHHHHHHHHHHHHHHHC--CCGGGEEEE
T ss_pred CcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhC--cCcccEEEE
No 22
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus}
Probab=24.09 E-value=1.6e+02 Score=28.46 Aligned_cols=52 Identities=13% Similarity=0.234 Sum_probs=34.2
Q ss_pred EEEEEEEEcCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcE-EEEecccCC
Q 008640 19 RARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNV-AISGIHTHA 77 (558)
Q Consensus 19 ~ARAlvl~~g~~~rva~Vs~Dl~~i~~~l~~~Vr~~l~~~~G~~i~~enI-lIsATHTHS 77 (558)
.+.+++|+.+ +. .|-+|...-.....+.+.+.|++ .| ++.+.| .|-.||.|.
T Consensus 21 ~~n~~li~~~--~~--~ilID~G~~~~~~~~~l~~~l~~-~g--~~~~~i~~Vi~TH~H~ 73 (317)
T 2zo4_A 21 TVNLYLLQGA--GE--VALVDTALGTRAARGALELHLAE-LG--LCFQDVKTILLTHHHP 73 (317)
T ss_dssp EEEEEEEEET--TE--EEEECCCCSSHHHHHHHHHHHHH-TT--CCGGGCCEEEESCCSH
T ss_pred cEEEEEEEcC--Cc--eEEEECCCCCHHHHHHHHHHHHH-cC--CChhhcCEEEEcCCCC
Confidence 5678888763 33 35678887766656667777766 67 664444 455688875
No 23
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=23.62 E-value=1.6e+02 Score=27.18 Aligned_cols=51 Identities=12% Similarity=0.161 Sum_probs=31.3
Q ss_pred EEEEEEEEcCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEecccCC
Q 008640 19 RARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHA 77 (558)
Q Consensus 19 ~ARAlvl~~g~~~rva~Vs~Dl~~i~~~l~~~Vr~~l~~~~G~~i~~enIlIsATHTHS 77 (558)
...++++..+ +...+ -+|... .....+.+.+.|++.++ ...+.|-.||.|.
T Consensus 29 ~~n~~li~~~-~~~~i--LiD~G~-~~~~~~~l~~~l~~~~~----~~~~~vi~TH~H~ 79 (246)
T 2fhx_A 29 SSNVLVAKML-DGTVV--IVSSPF-ENLGTQTLMDWVAKTMK----PKKVVAINTHFHL 79 (246)
T ss_dssp TEEEEEEECT-TSEEE--EESCCS-SHHHHHHHHHHHHHHHC----CSEEEEECCSSSH
T ss_pred CCCEEEEEeC-CCeEE--EEeCCC-CHHHHHHHHHHHHHhcC----CCcEEEEeCCCCc
Confidence 4577888764 44443 467644 44445667777777555 3345567899885
No 24
>1n62_B Carbon monoxide dehydrogenase large chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.41.1.1 d.133.1.1 PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B*
Probab=22.87 E-value=1.3e+02 Score=34.35 Aligned_cols=95 Identities=11% Similarity=0.070 Sum_probs=60.2
Q ss_pred EEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEecccCCCCCCCccchhhcc-cccccchhHHHHHHHHHHHHH
Q 008640 33 VVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPGGYLQYVVYIV-TSLGFVRQSFDALVDGIEKSV 111 (558)
Q Consensus 33 va~Vs~Dl~~i~~~l~~~Vr~~l~~~~G~~i~~enIlIsATHTHSgP~g~~~~~~~~~-~~~g~d~~y~~~lv~~iv~AI 111 (558)
-+.|.+-..-+.+.....+.+.+++.+| |+.++|-|..+-|...|.+....---.. ..+.....-.+.|.+++.+..
T Consensus 518 ~v~v~~g~~e~GqG~~T~~aQiaAe~LG--ip~e~V~v~~~DT~~~p~~~~t~aSr~t~~~G~Av~~Aa~~l~~~l~~~a 595 (809)
T 1n62_B 518 SVIARMGTKSQGQGHETTYAQIIATELG--IPADDIMIEEGNTDTAPYGLGTYGSRSTPTAGAATAVAARKIKAKAQMIA 595 (809)
T ss_dssp CEEEEESCCCSSSCHHHHHHHHHHHHHT--CCGGGEEEECCBTTTSCCCCCSCTTCTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCCCHHHHHHHHHHHHhC--CCHHHEEEecCCCCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777788888888999999999999 9999999999999988874322111000 011123444556666665544
Q ss_pred HHHHhcCCceEEEEEEEEe
Q 008640 112 LQAHENLRPGSIFVNKGEL 130 (558)
Q Consensus 112 ~~A~~~l~Pa~l~~g~g~~ 130 (558)
.+.+ ...|-.|.+..|.+
T Consensus 596 a~~l-~~~~~~l~~~~g~v 613 (809)
T 1n62_B 596 AHML-EVHEGDLEWDVDRF 613 (809)
T ss_dssp HHHH-TSCGGGEEECSSEE
T ss_pred HHHh-CCCHHHEEEeCCEE
Confidence 4433 33454455544443
No 25
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A
Probab=22.22 E-value=1.5e+02 Score=28.21 Aligned_cols=51 Identities=12% Similarity=0.275 Sum_probs=30.3
Q ss_pred eEEEEEEEEcCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEecccCC
Q 008640 18 LRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHA 77 (558)
Q Consensus 18 L~ARAlvl~~g~~~rva~Vs~Dl~~i~~~l~~~Vr~~l~~~~G~~i~~enIlIsATHTHS 77 (558)
....+++++.+ +.. |-+|...- .....++.+.|++.+| ++.+. |-.||.|.
T Consensus 66 ~~~n~~li~~~--~~~--iLID~G~~-~~~~~~l~~~l~~~~g--~~i~~--VilTH~H~ 116 (265)
T 2y8b_A 66 YSSNGLIVRDA--DEL--LLIDTAWG-AKNTVALLAEIEKQIG--LPVTR--SISTHFHD 116 (265)
T ss_dssp EEEEEEEEEET--TEE--EEESCCSS-HHHHHHHHHHHHHHTC--SCEEE--EECSSSSH
T ss_pred ccceEEEEEEC--CeE--EEEeCCCC-HHHHHHHHHHHHHhcC--CCeEE--EEeCCCCh
Confidence 34567777763 333 34687653 3345667777877557 55444 45578774
No 26
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=20.97 E-value=1.1e+02 Score=26.22 Aligned_cols=44 Identities=14% Similarity=0.156 Sum_probs=34.1
Q ss_pred CCEEEEEEeccCcccHH----HHHHHHHHHHHHhCCCCCCCcEEEEeccc
Q 008640 30 GNRVVFVNLDACMASQI----VKIKVIERLKARYGDLYTEKNVAISGIHT 75 (558)
Q Consensus 30 ~~rva~Vs~Dl~~i~~~----l~~~Vr~~l~~~~G~~i~~enIlIsATHT 75 (558)
...+++|.+...+...+ +..++-+.|.+.+| +++++|.|.-+-+
T Consensus 63 ~~~~~~I~i~~~grt~eqK~~l~~~l~~~l~~~lg--~~~~~v~I~i~e~ 110 (131)
T 2aal_A 63 SSAVVLLTVISRPRSEEQKVCFYKLLTGALERDCG--ISPDDVIVALVEN 110 (131)
T ss_dssp CTTCEEEEEEESCCCHHHHHHHHHHHHHHHHHHHC--CCGGGEEEEEEEC
T ss_pred CCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHHHhC--cCcccEEEEEEEc
Confidence 45688999887676655 56677777788899 9999999987654
No 27
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=20.77 E-value=51 Score=27.95 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEecccCCCCC
Q 008640 47 VKIKVIERLKARYGDLYTEKNVAISGIHTHAGPG 80 (558)
Q Consensus 47 l~~~Vr~~l~~~~G~~i~~enIlIsATHTHSgP~ 80 (558)
-..+|+++|++.++ .+++.|+|-.-.||-|-+
T Consensus 32 sk~eirekLA~~~~--~~~~~vvv~~~~t~fG~g 63 (98)
T 2g1d_A 32 SREEIKELIAKHEG--VDKELVIVDNNKQLTGKH 63 (98)
T ss_dssp CHHHHHHHHHHHHH--SCSTTEECCCCCCCSSSS
T ss_pred CHHHHHHHHHHHHC--CCCCEEEEEeeEecCCCc
Confidence 36899999999999 899999999999999876
No 28
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=20.77 E-value=91 Score=22.80 Aligned_cols=28 Identities=11% Similarity=-0.001 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEeccc
Q 008640 46 IVKIKVIERLKARYGDLYTEKNVAISGIHT 75 (558)
Q Consensus 46 ~l~~~Vr~~l~~~~G~~i~~enIlIsATHT 75 (558)
.+..++-+.|++.+| +++++|+|.-.-.
T Consensus 19 ~l~~~lt~~l~~~lg--~~~~~v~V~i~e~ 46 (64)
T 3abf_A 19 ELVRRLTEMASRLLG--EPYEEVRVILYEV 46 (64)
T ss_dssp HHHHHHHHHHHHHTT--CCGGGEEEEEEEE
T ss_pred HHHHHHHHHHHHHhC--CCcccEEEEEEEc
Confidence 467778888888899 9999999987544
Done!