BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008642
(558 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225424657|ref|XP_002282396.1| PREDICTED: uncharacterized protein LOC100249068 [Vitis vinifera]
gi|296081359|emb|CBI16792.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/556 (64%), Positives = 420/556 (75%), Gaps = 33/556 (5%)
Query: 7 TAVTPKTPLSKDHT------CCLLFCPNYHP--KFCA--SLNPKPL--TTSPKSLS---- 50
+AVTP+T + + C LL CPN H FC KPL T S SL+
Sbjct: 4 SAVTPQTLVGNSGSNTTSSNCNLLVCPNNHKVHSFCRPNGFTQKPLILTNSSNSLANNTS 63
Query: 51 ------SNGTSLRHVTRTLSNDDEPPAAGSPMVSSASAVASAIRRTSTSPIEFLQTIETD 104
SN +LRH + T S++ E MV+SASAVASAIRR STSP++F+Q IE +
Sbjct: 64 QLQNPNSNSKTLRHDSLTDSDETE-----GAMVASASAVASAIRRASTSPVDFIQRIEKN 118
Query: 105 QKRCNLVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGV 164
QK LVLPSPDFQRLC+EQL LF RIVDP+A+LSVYVRPAGSYVMDRLELRRV YPGV
Sbjct: 119 QKN-GLVLPSPDFQRLCLEQLDLFHRIVDPNALLSVYVRPAGSYVMDRLELRRVTFYPGV 177
Query: 165 NATDIVVLVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLM 224
N DIV+LVGNF++P G R AEAALS+QQ +V+PE RAVVFPMVKHPFVVGFLVAELP++
Sbjct: 178 NGADIVILVGNFSIPTGFRVAEAALSNQQAEVIPECRAVVFPMVKHPFVVGFLVAELPMV 237
Query: 225 ELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINI 284
E + E S +E YA PP D + I++ + E ++ YKF+ +QRLNAINI
Sbjct: 238 EDE----RERHPVTHCTSPDESYALPPQSDMKLGEIQALEEEGLKSYKFTEEQRLNAINI 293
Query: 285 CRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISY 344
RSLAMAYVMDQK+MLLQQSSWQNN RMS+LVEQIRGPLSSI+TLSKMLSLHMKRSEI+
Sbjct: 294 SRSLAMAYVMDQKAMLLQQSSWQNNVRMSDLVEQIRGPLSSIRTLSKMLSLHMKRSEIAN 353
Query: 345 DIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNN 404
DIVEDI+VQGDR+R LQ+LQDAV LTKANIVRYNEETLKKM S Y+H +S+ +QLS+N
Sbjct: 354 DIVEDIVVQGDRMRDALQQLQDAVHLTKANIVRYNEETLKKMYKSTYAHADSV-NQLSDN 412
Query: 405 FSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVR 464
F RE S +K + S +PLSL + A D++MP PPLALA + Q+GIRPCNV D+L DL AV+
Sbjct: 413 FWRETSSSKAEESGEPLSLTSAANDLDMPTPPLALARVSQHGIRPCNVYDILADLVGAVK 472
Query: 465 PLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGD 524
PLAH QQR+VEL SQ+L VAVEEPALRQALSNLIEGAL+RT+VGGKVEI+S PAG
Sbjct: 473 PLAHKQQREVELIGRSQTLQVAVEEPALRQALSNLIEGALLRTRVGGKVEILSTGTPAGG 532
Query: 525 ALVVIDDDGPDMHYMV 540
A VVIDDDGPDMHYM
Sbjct: 533 AFVVIDDDGPDMHYMT 548
>gi|255578347|ref|XP_002530040.1| ATP binding protein, putative [Ricinus communis]
gi|223530456|gb|EEF32340.1| ATP binding protein, putative [Ricinus communis]
Length = 710
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/511 (69%), Positives = 406/511 (79%), Gaps = 16/511 (3%)
Query: 51 SNGTSLRH-VTRTLSNDDEPPAAGSP-MVSSASAVASAIRRTSTSPIEFLQTIETDQKRC 108
+N +SL H VTRTL N EP + P M+SSASAVASAIR TS SPIEF+Q +E K
Sbjct: 130 NNTSSLLHRVTRTLPNG-EPELSSPPEMLSSASAVASAIRNTSNSPIEFVQKMEKSDK-S 187
Query: 109 NLVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGV-NAT 167
LVLPS DF+RLC+EQL LFRRIVDPDA+LSVYVRPAGSYVMDRLELRRV SYPG+ +A+
Sbjct: 188 KLVLPSLDFRRLCIEQLDLFRRIVDPDAILSVYVRPAGSYVMDRLELRRVTSYPGIISAS 247
Query: 168 DIVVLVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMEL- 226
D+V+LVG FN+P GLRAAEAAL+SQQV VP+ RAVVFPMVKHPFVVGFLVAELP MEL
Sbjct: 248 DVVILVGTFNIPTGLRAAEAALASQQVNFVPDHRAVVFPMVKHPFVVGFLVAELPTMELV 307
Query: 227 ------QMCGTEEPDAAIGFQSSEEVYAFPPSFDT-ESHAIESFDHERMRVYKFSADQRL 279
Q G E + + FQS EE Y P S D +S I++ + E R+Y FSA+QRL
Sbjct: 308 PSYENVQTKGHE--NDLVPFQSPEEAYPLPSSPDNNKSWTIQTLNDESFRMYNFSAEQRL 365
Query: 280 NAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKR 339
NAINI RSLAMAYVMDQK+MLLQQSSWQNN RMSNLVEQIRGPLSSIQTLSKMLS H+KR
Sbjct: 366 NAINISRSLAMAYVMDQKAMLLQQSSWQNNVRMSNLVEQIRGPLSSIQTLSKMLSTHLKR 425
Query: 340 SEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRS 399
SEISYDIVEDIMVQGDRLR TLQELQDAV LTKANI+RYNEE L++++NS Y H ES+ S
Sbjct: 426 SEISYDIVEDIMVQGDRLRDTLQELQDAVHLTKANIMRYNEEALQRIHNSNYHHHESLGS 485
Query: 400 QLSNNFSRE-NSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGD 458
LS+N R+ + N L NS KP SL+ P D+EMPMPP+ALAPL+Q GIRPCNV +VL D
Sbjct: 486 HLSDNIPRDADDSNNLHNSGKPHSLNVPLDDLEMPMPPMALAPLQQYGIRPCNVYEVLSD 545
Query: 459 LFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSA 518
L AV+PL QQR + LSELSQSL VA+EE ALRQALSNLIEGAL+RT+VGGKVEIV
Sbjct: 546 LVGAVQPLTFKQQRNIVLSELSQSLQVAIEEQALRQALSNLIEGALLRTRVGGKVEIVCT 605
Query: 519 AAPAGDALVVIDDDGPDMHYMVIIANFAAYS 549
APAG ALV+IDDDGPDMHYM + + A +
Sbjct: 606 EAPAGGALVIIDDDGPDMHYMTQMHSLAPFG 636
>gi|449434987|ref|XP_004135277.1| PREDICTED: uncharacterized protein LOC101223159 [Cucumis sativus]
gi|449520695|ref|XP_004167369.1| PREDICTED: uncharacterized LOC101223159 [Cucumis sativus]
Length = 627
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 310/493 (62%), Positives = 383/493 (77%), Gaps = 20/493 (4%)
Query: 54 TSLRHVTRTL--SNDDEPPAAGSPMVSSASAVASAIRRTSTSPIEFLQTIETDQKRCNLV 111
T LRHV+ T+ ++DD GS MV SASAVASAI + STSP++F+ IE Q LV
Sbjct: 62 TLLRHVSHTVRDTHDD-----GS-MVPSASAVASAILKASTSPVDFVHRIENSQN-TGLV 114
Query: 112 LPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVV 171
LPSPDFQRLC+EQL LFRRIVDPDA+LSVYVRPAGSYVMDRLELRRV S+PGVN TD+V+
Sbjct: 115 LPSPDFQRLCIEQLDLFRRIVDPDALLSVYVRPAGSYVMDRLELRRVASFPGVNVTDVVI 174
Query: 172 LVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMC-- 229
LVGNF++P GLRAAEAA SSQQV+V+ E +A+VFPMVKHPFVVGFLVAELP +E++ C
Sbjct: 175 LVGNFSVPTGLRAAEAAFSSQQVEVISEHKAIVFPMVKHPFVVGFLVAELPNLEMETCLD 234
Query: 230 ---GTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINICR 286
+P + S E A +H + + ++ Y F+AD + NA +I R
Sbjct: 235 MQSADRDP---WSYSSPHEAGALVAGSGISTHGFHNATNGSLKTYMFNADSQENAFHISR 291
Query: 287 SLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDI 346
SLAMAYVMDQK+MLLQQSSWQNN RM+NLV+QIRG LSSIQ+LSKMLS+HMK++EI+Y+I
Sbjct: 292 SLAMAYVMDQKAMLLQQSSWQNNLRMTNLVDQIRGSLSSIQSLSKMLSVHMKKNEIAYEI 351
Query: 347 VEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFS 406
+EDI++QGD +R TLQ+LQDAV+LTKANIV YNEETLKKM S+ ES+++QL +NF
Sbjct: 352 LEDILLQGDYMRNTLQQLQDAVYLTKANIVHYNEETLKKMYKSSNPLSESVKNQL-DNFP 410
Query: 407 RENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPL 466
+ S +++ +S + +D+EMPMPP LAP+++ GIR CNVSDVL DL EAV+PL
Sbjct: 411 TDASNPRMKGGL--VSSNNTVRDMEMPMPPTILAPIQRQGIRSCNVSDVLIDLVEAVKPL 468
Query: 467 AHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL 526
A QQR VELSE + S+ +AVEE +LRQALSNLIEGAL+RT+VGGKVEI+S AAPAG AL
Sbjct: 469 ARKQQRIVELSEQACSMQIAVEESSLRQALSNLIEGALLRTRVGGKVEIISTAAPAGGAL 528
Query: 527 VVIDDDGPDMHYM 539
+V+DDDGPDMHYM
Sbjct: 529 IVVDDDGPDMHYM 541
>gi|147860581|emb|CAN81865.1| hypothetical protein VITISV_010592 [Vitis vinifera]
Length = 608
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 335/568 (58%), Positives = 392/568 (69%), Gaps = 76/568 (13%)
Query: 7 TAVTPKTPLSKDHT------CCLLFCPNYHP--KFCA--SLNPKPL--TTSPKSLS---- 50
+AVTP+T + + C LL CPN H FC KPL T S SL+
Sbjct: 4 SAVTPQTLVGNSGSNTTSSNCNLLVCPNNHKVHSFCRPNGFTQKPLILTNSSNSLANNTS 63
Query: 51 ------SNGTSLRHVTRTLSNDDEPPAAGSPMVSSASAVASAIRRTSTSPIEFLQTIETD 104
SN +LRH + T S++ E MV+SASAVASAIRR STSP++F+Q IE +
Sbjct: 64 QLQNPNSNSKTLRHDSLTDSDETE-----GAMVASASAVASAIRRASTSPVDFIQRIEKN 118
Query: 105 QKRCNLVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGV 164
QK LVLPSPDFQRLC+EQL LF RIVDP+A+LSVYVRPAGSYVMDRLELRRV YPGV
Sbjct: 119 QKN-GLVLPSPDFQRLCLEQLDLFHRIVDPNALLSVYVRPAGSYVMDRLELRRVTFYPGV 177
Query: 165 NATDIVVLVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLM 224
N DIV+LVGNF++P G R AEAALS+QQ +V+PE RAVVFPMVKHPFVVGFLVAELP++
Sbjct: 178 NGADIVILVGNFSIPTGFRVAEAALSNQQAEVIPECRAVVFPMVKHPFVVGFLVAELPMV 237
Query: 225 ELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINI 284
E + E S +E YA PP D I++ + E ++ YKF+ +QRLNAINI
Sbjct: 238 EDE----RERHPVTHCTSPDESYALPPQSDMXLGEIQALEEEGLKSYKFTEEQRLNAINI 293
Query: 285 CRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISY 344
RSLAMAYVMDQK+MLLQQSSWQNN RMS+LVEQIRGPLSSI+TLSKMLSLHMKRSE
Sbjct: 294 SRSLAMAYVMDQKAMLLQQSSWQNNVRMSDLVEQIRGPLSSIRTLSKMLSLHMKRSE--- 350
Query: 345 DIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNN 404
ANIVRYNEETLKKM S Y+H +S+ +QLS+N
Sbjct: 351 ----------------------------ANIVRYNEETLKKMYKSTYAHADSV-NQLSDN 381
Query: 405 FSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGI------------RPCNV 452
F RE S +K + S +PLSL + A D++MP PPLALA + Q+GI RPCNV
Sbjct: 382 FWRETSSSKAEESGEPLSLTSAANDLDMPTPPLALARVSQHGISSLLLMSLFMSGRPCNV 441
Query: 453 SDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGK 512
D+L DL AV+PLAH QQR+VEL SQ+L VAVEEPALRQALSNLIEGAL+RT+VGGK
Sbjct: 442 YDILADLVGAVKPLAHKQQREVELIGRSQTLQVAVEEPALRQALSNLIEGALLRTRVGGK 501
Query: 513 VEIVSAAAPAGDALVVIDDDGPDMHYMV 540
VEI+S PAG A VVIDDDGPDMHYM
Sbjct: 502 VEILSTGTPAGGAFVVIDDDGPDMHYMT 529
>gi|18408874|ref|NP_564908.1| chloroplast sensor kinase [Arabidopsis thaliana]
gi|332196584|gb|AEE34705.1| chloroplast sensor kinase [Arabidopsis thaliana]
Length = 611
Score = 585 bits (1509), Expect = e-164, Method: Compositional matrix adjust.
Identities = 323/529 (61%), Positives = 393/529 (74%), Gaps = 30/529 (5%)
Query: 27 PNYHPKFCASL-NPKPLTTSPKSLSSNGT------------SLRHVTRTLSNDDEPPAAG 73
PN H F S+ NP+P S K L+++ + LR+V T+SN++ P G
Sbjct: 16 PNLH--FSNSIPNPRPSNPSLKLLNASSSSSSSSSSSIFTRGLRYVNHTVSNEESEPGGG 73
Query: 74 SPMVSSASAVASAIRRTSTSPIEFLQTIETDQKRCNLVLPSPDFQRLCVEQLHLFRRIVD 133
MV+SASA+ASAIR ST+P+EF Q IE D + ++LPSPDFQRLC+EQL LFR+IVD
Sbjct: 74 ETMVASASAIASAIRGASTTPVEFTQMIEKDHLKTKIILPSPDFQRLCLEQLDLFRQIVD 133
Query: 134 PDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFNMPAGLRAAEAALSSQQ 193
P+AVLS+YVRPAGSYVMDRLELRRV YP VNA D+V+LVGNF +PAGLRAAEA+LSSQQ
Sbjct: 134 PNAVLSIYVRPAGSYVMDRLELRRVTCYPSVNAGDVVILVGNFGIPAGLRAAEASLSSQQ 193
Query: 194 VQVVPEQRAVVFPMVKHPFVVGFLVAELPL---MELQMCGTEEPDAAIGFQSSEEVYAFP 250
V++V + RA VFPMVKHPFVVGFLVAELP+ E + E+P F S EE YA P
Sbjct: 194 VELVSKHRAAVFPMVKHPFVVGFLVAELPVEAEEEEEEEEEEKPHGVNQFLSPEEAYALP 253
Query: 251 PSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNA 310
S +T+S + + V F+ +QR AINI R+LAMAYVMDQK+MLLQQSSWQNN
Sbjct: 254 ASANTKSPRV-----KLPSVKVFTEEQRSYAINISRTLAMAYVMDQKTMLLQQSSWQNNV 308
Query: 311 RMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFL 370
RMS LVEQIRGPLS+++TLSKMLS H KR++IS+DIVED++VQGD+++ TL+ELQDAV L
Sbjct: 309 RMSKLVEQIRGPLSTMRTLSKMLSTHTKRNQISHDIVEDLIVQGDQIKDTLEELQDAVHL 368
Query: 371 TKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDI 430
TKANIVR+NEE LKK+N +H E+ RS+ + ++ + Q S LSL + D
Sbjct: 369 TKANIVRHNEEALKKINK---THNETRRSK----YEHKDPIDGSQISSTRLSLGSGLDDS 421
Query: 431 EMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEP 490
EMPMPPLALAPL+ + IRPC++S+VL D+ E VRPLA QQR VEL E S SL VAVEEP
Sbjct: 422 EMPMPPLALAPLQMHSIRPCDISNVLLDMVETVRPLALTQQRVVELGENSASLQVAVEEP 481
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539
ALRQALSNLIEGAL+RT VGGKVEI+S APAG +LVVIDDDGPDM YM
Sbjct: 482 ALRQALSNLIEGALLRTHVGGKVEILSTRAPAGGSLVVIDDDGPDMRYM 530
>gi|297838533|ref|XP_002887148.1| hypothetical protein ARALYDRAFT_894541 [Arabidopsis lyrata subsp.
lyrata]
gi|297332989|gb|EFH63407.1| hypothetical protein ARALYDRAFT_894541 [Arabidopsis lyrata subsp.
lyrata]
Length = 610
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 310/489 (63%), Positives = 377/489 (77%), Gaps = 16/489 (3%)
Query: 55 SLRHVTRTLSNDDEPPAAGSPMVSSASAVASAIRRTSTSPIEFLQTIETDQKRCNLVLPS 114
LR+V RT+SN++ P G MV+SASA+ASAIR ST+P+EF Q IE D + ++LPS
Sbjct: 53 GLRYVNRTVSNEESEPGGGETMVASASAIASAIRGASTTPVEFTQIIEKDHLKTKIILPS 112
Query: 115 PDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVG 174
PDFQRLC+EQL LFR+IVDP+AVLS+YVRPAGSYVMDRLELRRV YP VN D+V+LVG
Sbjct: 113 PDFQRLCLEQLDLFRQIVDPNAVLSIYVRPAGSYVMDRLELRRVTCYPSVNTGDVVILVG 172
Query: 175 NFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPL----MELQMCG 230
NF +PAGLRAAEA+LSSQQV++V + RA VFPMVKHPFVVGFLVAELP+ E +
Sbjct: 173 NFGIPAGLRAAEASLSSQQVELVNKHRAAVFPMVKHPFVVGFLVAELPVEAEEEEEEEKE 232
Query: 231 TEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAM 290
E+P F S EE YA P S +T+S + + V F+A+QR AINI R+LAM
Sbjct: 233 EEKPHGLKHFPSPEEAYALPASANTKSPKV-----KLPSVKVFTAEQRSYAINISRTLAM 287
Query: 291 AYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDI 350
AYVMDQK+MLLQQSSWQNN RMS LVEQIRGPLS+++TLSKMLS H KR++IS+DIVED+
Sbjct: 288 AYVMDQKTMLLQQSSWQNNVRMSKLVEQIRGPLSTMRTLSKMLSSHTKRNQISHDIVEDL 347
Query: 351 MVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENS 410
+VQGD+++ TL+ELQDAV LTKANIVR+NEE LKK+N +H E+ RS N+ +++
Sbjct: 348 IVQGDQIKDTLEELQDAVHLTKANIVRHNEEALKKINK---THNETRRS----NYEQKDP 400
Query: 411 GNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQ 470
+ + LSL + + D E+PMPPLALAPL+ + IRPC++S+VL D+ E VRPLA Q
Sbjct: 401 IDGSKIPSIRLSLGSGSDDSEIPMPPLALAPLQTHNIRPCDISNVLLDMVETVRPLALTQ 460
Query: 471 QRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID 530
QR VEL E S SL VAVEE ALRQALSNLIEGAL+RT VGGKVEI+S APAG +LVVID
Sbjct: 461 QRVVELGENSASLQVAVEESALRQALSNLIEGALLRTHVGGKVEILSTRAPAGGSLVVID 520
Query: 531 DDGPDMHYM 539
DDGPDM YM
Sbjct: 521 DDGPDMRYM 529
>gi|224110864|ref|XP_002315662.1| predicted protein [Populus trichocarpa]
gi|222864702|gb|EEF01833.1| predicted protein [Populus trichocarpa]
Length = 473
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 280/395 (70%), Positives = 328/395 (83%), Gaps = 10/395 (2%)
Query: 150 MDRLELRRVVSYPGVNAT--DIVVLVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPM 207
MDRLELRRV SYPGVNA+ DIV+LV NFN+P GLRAAEAA SS+Q + V E RAVVFPM
Sbjct: 1 MDRLELRRVTSYPGVNASSSDIVILVANFNIPTGLRAAEAAFSSKQAECVAEHRAVVFPM 60
Query: 208 VKHPFVVGFLVAELPLMELQM-CGTEEPDAAIGFQSSEEVYAFP-PSFD-TESHAIESFD 264
VKHPFVVGFLVAELP+ME+ + C E D S EE YA P SF ++S +I++ +
Sbjct: 61 VKHPFVVGFLVAELPMMEMDISCANGESD----LISPEEAYASPSASFKKSKSWSIQTLN 116
Query: 265 HERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLS 324
E +R++ F+A+QRLNAINI +LAMAYVMDQK++LLQQSSWQNN RM+ LVEQIRGPLS
Sbjct: 117 DEPLRMFNFTAEQRLNAINISHTLAMAYVMDQKALLLQQSSWQNNVRMTTLVEQIRGPLS 176
Query: 325 SIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLK 384
SI+TLSKMLS+H KRSEI+YDIVEDI+VQGD +R LQELQDAV+LTKANIVRYNEETL
Sbjct: 177 SIRTLSKMLSIHTKRSEIAYDIVEDIIVQGDSVRDALQELQDAVYLTKANIVRYNEETLM 236
Query: 385 KMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQ 444
K++NSAY+HPES+RSQL +F ++S +KLQ KP L+ +KD+EMPMPPLAL+PL+Q
Sbjct: 237 KIHNSAYAHPESMRSQLPEDFLNDSS-DKLQTPGKPRFLNPASKDMEMPMPPLALSPLQQ 295
Query: 445 NGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGAL 504
+GIRPCNVS+VL DL EA PLA+ QQR +EL ELSQSL VA+EEPALRQALSNLIEGAL
Sbjct: 296 HGIRPCNVSEVLSDLVEAAIPLANKQQRILELGELSQSLQVAIEEPALRQALSNLIEGAL 355
Query: 505 MRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539
+RT VGGKVEIVS APAG ALVVIDDDGPDMHYM
Sbjct: 356 LRTHVGGKVEIVSTGAPAGGALVVIDDDGPDMHYM 390
>gi|356511068|ref|XP_003524253.1| PREDICTED: uncharacterized protein LOC100792515 [Glycine max]
Length = 612
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 299/479 (62%), Positives = 361/479 (75%), Gaps = 9/479 (1%)
Query: 77 VSSASAVASAIRRTSTSPIEFLQTIETDQKRCNLVLPSPDFQRLCVEQLHLFRRIVDPDA 136
V SA+AVA+AIR+ STSP++F Q +E ++++ LVLPS DF RLC+ QLHLFRRIV P+A
Sbjct: 63 VPSAAAVAAAIRKASTSPVQFTQQLE-NERQSGLVLPSTDFHRLCLHQLHLFRRIV-PEA 120
Query: 137 VLSVYVRPAGSYVMDRLELRRVVSYPG-VNATDIVVLVGNFNMPAGLRAAEAALSSQQVQ 195
+LSVYVRPAGSYVMDRLELRRV YPG A IV+LVG+FN+PAGLRAAEA LS+ QV
Sbjct: 121 LLSVYVRPAGSYVMDRLELRRVALYPGDAEAEGIVILVGHFNIPAGLRAAEATLSNSQVN 180
Query: 196 VVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPP--SF 253
VVPE +AVV PMVKHPFVVGFLVAELPL+E + C + D S EE Y+FPP
Sbjct: 181 VVPECKAVVLPMVKHPFVVGFLVAELPLVEQEQCQKSQSDGPENLMSVEEPYSFPPFLDL 240
Query: 254 DTESHAIESFD--HERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNAR 311
D +S I++ +E + ++ F+++QR NA+NI +SLAMAYVMDQK+MLLQQS+WQNN R
Sbjct: 241 DKKSREIQNLQVKNEAVGMHNFTSEQRSNAVNISQSLAMAYVMDQKAMLLQQSTWQNNVR 300
Query: 312 MSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLT 371
M NLVEQIRGPLSSIQTLSK+LS KR++IS+DIVED++VQGDRLR LQ+LQDAV+LT
Sbjct: 301 MGNLVEQIRGPLSSIQTLSKILSTQTKRTQISHDIVEDLLVQGDRLRDVLQQLQDAVYLT 360
Query: 372 KANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIE 431
K NIVRYNEE +KKMN S + ES RSQL ++ + S NK++ S + LSL +DIE
Sbjct: 361 KTNIVRYNEEAIKKMNGSTHILAESSRSQLLDSSPGDVSANKMKKSSESLSLSAAVQDIE 420
Query: 432 MPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQV-ELSELSQSLLVAVEEP 490
M P Q+GIR CNVS+VL DL ++VRPLA Q+R V S LL AVEEP
Sbjct: 421 M-PLPPLALAPLQHGIRSCNVSEVLADLVDSVRPLAQGQKRVVELSELSSSPLLAAVEEP 479
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYS 549
ALRQA SNLIEGAL+RT VGGKVEIVS AAPAG LV+IDDDGPDMHYM + + Y
Sbjct: 480 ALRQAFSNLIEGALLRTHVGGKVEIVSTAAPAGGTLVLIDDDGPDMHYMTQMHSLTPYG 538
>gi|11072033|gb|AAG28912.1|AC008113_28 F12A21.3 [Arabidopsis thaliana]
Length = 610
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 306/529 (57%), Positives = 376/529 (71%), Gaps = 31/529 (5%)
Query: 27 PNYHPKFCASL-NPKPLTTSPKSLSSNGT------------SLRHVTRTLSNDDEPPAAG 73
PN H F S+ NP+P S K L+++ + LR+V T+SN++ P G
Sbjct: 16 PNLH--FSNSIPNPRPSNPSLKLLNASSSSSSSSSSSIFTRGLRYVNHTVSNEESEPGGG 73
Query: 74 SPMVSSASAVASAIRRTSTSPIEFLQTIETDQKRCNLVLPSPDFQRLCVEQLHLFRRIVD 133
MV+SASA+ASAIR ST+P+EF Q IE D + ++LPSPDFQRLC+EQL LFR+IVD
Sbjct: 74 ETMVASASAIASAIRGASTTPVEFTQMIEKDHLKTKIILPSPDFQRLCLEQLDLFRQIVD 133
Query: 134 PDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFNMPAGLRAAEAALSSQQ 193
P+AVLS+YVRPAGSYVMDRLELRRV YP VNA D+V+LVGNF +PAGLRAAEA+LSSQQ
Sbjct: 134 PNAVLSIYVRPAGSYVMDRLELRRVTCYPSVNAGDVVILVGNFGIPAGLRAAEASLSSQQ 193
Query: 194 VQVVPEQRAVVFPMVKHPFVVGFLVAELPL---MELQMCGTEEPDAAIGFQSSEEVYAFP 250
V++V + RA VFPMVKHPFVVGFLVAELP+ E + E+P F S EE YA P
Sbjct: 194 VELVSKHRAAVFPMVKHPFVVGFLVAELPVEAEEEEEEEEEEKPHGVNQFLSPEEAYALP 253
Query: 251 PSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNA 310
S +T+S + + V F+ +QR AINI R+LAMAYVMDQK+MLLQQSSWQNN
Sbjct: 254 ASANTKSPRV-----KLPSVKVFTEEQRSYAINISRTLAMAYVMDQKTMLLQQSSWQNNV 308
Query: 311 RMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFL 370
RMS LVEQ++ S+Q ++ + S SY D++VQGD+++ TL+ELQDAV L
Sbjct: 309 RMSKLVEQVQATHLSLQLAFVAGNVILPES-CSYRTDLDLIVQGDQIKDTLEELQDAVHL 367
Query: 371 TKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDI 430
TKANIVR+NEE LKK+N +H E+ RS+ + ++ + Q S LSL + D
Sbjct: 368 TKANIVRHNEEALKKINK---THNETRRSK----YEHKDPIDGSQISSTRLSLGSGLDDS 420
Query: 431 EMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEP 490
EMPMPPLALAPL+ + IRPC++S+VL D+ E VRPLA QQR VEL E S SL VAVEEP
Sbjct: 421 EMPMPPLALAPLQMHSIRPCDISNVLLDMVETVRPLALTQQRVVELGENSASLQVAVEEP 480
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539
ALRQALSNLIEGAL+RT VGGKVEI+S APAG +LVVIDDDGPDM YM
Sbjct: 481 ALRQALSNLIEGALLRTHVGGKVEILSTRAPAGGSLVVIDDDGPDMRYM 529
>gi|109676316|gb|ABG37640.1| ATP-binding protein [Populus trichocarpa]
Length = 771
Score = 516 bits (1330), Expect = e-143, Method: Compositional matrix adjust.
Identities = 298/516 (57%), Positives = 358/516 (69%), Gaps = 74/516 (14%)
Query: 40 KPLTTSPKSLS---SNGT---SLRHVTRTLSNDDEPPAAGSPMVSSASAVASAIRRTSTS 93
KPL +P + S SNG + HVT +LS+DDE GS +VSSASAVASAIRR S+S
Sbjct: 233 KPLLRAPSASSLTASNGNLENPIHHVTHSLSDDDEEAGGGSGLVSSASAVASAIRRGSSS 292
Query: 94 PIEFLQTIETDQK----RCNLVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYV 149
+EF+Q IE Q + LVLPSPDFQRLCV+QL LF RIVDPDA+LSVYVRPAGSYV
Sbjct: 293 SVEFVQRIEKGQNNNDNKTKLVLPSPDFQRLCVQQLDLFHRIVDPDAILSVYVRPAGSYV 352
Query: 150 MDRLELRRVVSYPGVNA--TDIVVLVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPM 207
MDRLELRRV SYPGVNA +DIV+LV NFN+P GLRAAEAA SS+Q + V E RAVVFPM
Sbjct: 353 MDRLELRRVTSYPGVNASSSDIVILVANFNIPTGLRAAEAAFSSKQAECVAEHRAVVFPM 412
Query: 208 VKHPFVVGFLVAELPLMELQM-CGTEEPDAAIGFQSSEEVYAFP-PSF-DTESHAIESFD 264
VKHPFVVGFLVAELP+ME+ + C E D S EE YA P SF ++S +I++ +
Sbjct: 413 VKHPFVVGFLVAELPMMEMDISCANGESD----LISPEEAYASPSASFKKSKSWSIQTLN 468
Query: 265 HERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLS 324
E +R++ F+A+QRLNAINI +LAMAYVMDQK++LLQQSSWQNN RM+ LVEQ
Sbjct: 469 DEPLRMFNFTAEQRLNAINISHTLAMAYVMDQKALLLQQSSWQNNVRMTTLVEQA----- 523
Query: 325 SIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLK 384
+ + Y+ TL ++ ++ +
Sbjct: 524 ---------------NIVRYN------------EETLMKIHNSAY--------------- 541
Query: 385 KMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQ 444
+HPES+RSQL +F ++S +KLQ KP L+ +KD+EMPMPPLAL+PL+Q
Sbjct: 542 -------AHPESMRSQLPEDFLNDSS-DKLQTPGKPRFLNPASKDMEMPMPPLALSPLQQ 593
Query: 445 NGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGAL 504
+GIRPCNVS+VL DL EA PLA+ QQR +EL ELSQSL VA+EEPALRQALSNLIEGAL
Sbjct: 594 HGIRPCNVSEVLSDLVEAAIPLANKQQRILELGELSQSLQVAIEEPALRQALSNLIEGAL 653
Query: 505 MRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMV 540
+RT VGGKVEIVS APAG ALVVIDDDGPDMHYM
Sbjct: 654 LRTHVGGKVEIVSTGAPAGGALVVIDDDGPDMHYMT 689
>gi|15146206|gb|AAK83586.1| At1g67840/F12A21_3 [Arabidopsis thaliana]
gi|21360445|gb|AAM47338.1| At1g67840/F12A21_3 [Arabidopsis thaliana]
Length = 457
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 249/403 (61%), Positives = 302/403 (74%), Gaps = 15/403 (3%)
Query: 150 MDRLELRRVVSYPGVNATDIVVLVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVK 209
MDRLELRRV YP VNA D+V+LVGNF +PAGLRAAEA+LSSQQV++V + RA VFPMVK
Sbjct: 1 MDRLELRRVTCYPSVNAGDVVILVGNFGIPAGLRAAEASLSSQQVELVSKHRAAVFPMVK 60
Query: 210 HPFVVGFLVAELPLMELQMCGTE---EPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHE 266
HPFVVGFLVAELP+ + E +P F S EE YA P S +T+S ++
Sbjct: 61 HPFVVGFLVAELPVEAEEEEEEEEEEKPHGVNQFLSPEEAYALPASANTKSPRVKLPS-- 118
Query: 267 RMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSI 326
V F+ +QR AINI R+LAMAYVMDQK+MLLQQSSWQNN RMS LVEQIRGPLS++
Sbjct: 119 ---VKVFTEEQRSYAINISRTLAMAYVMDQKTMLLQQSSWQNNVRMSKLVEQIRGPLSTM 175
Query: 327 QTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKM 386
+TLSKMLS H KR++IS+DIVED++VQGD+++ TL+ELQDAV LTKANI+R+NEE LKK+
Sbjct: 176 RTLSKMLSTHTKRNQISHDIVEDLIVQGDQIKDTLEELQDAVHLTKANIMRHNEEALKKI 235
Query: 387 NNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNG 446
N +H E+ RS+ + ++ + Q S LSL + D EMPMPPLALAPL+ +
Sbjct: 236 NK---THNETRRSK----YEHKDPIDGSQISSTRLSLGSGLDDSEMPMPPLALAPLQMHS 288
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
IRPC++S+VL D+ E VRPLA QQR VEL E S SL VAVEEPALRQALSNLIEGAL+R
Sbjct: 289 IRPCDISNVLLDMVETVRPLALTQQRVVELGENSASLQVAVEEPALRQALSNLIEGALLR 348
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYS 549
T VGGKVEI+S APAG +LVVIDDDGPDM YM + + +
Sbjct: 349 THVGGKVEILSTRAPAGGSLVVIDDDGPDMRYMTQMHSLTPFG 391
>gi|218186700|gb|EEC69127.1| hypothetical protein OsI_38049 [Oryza sativa Indica Group]
Length = 598
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 272/546 (49%), Positives = 345/546 (63%), Gaps = 48/546 (8%)
Query: 31 PKFCASLNPKPLT------TSPKSLSSNGTS--LRHVTRTLSND-DEPPAAGSPMVSSAS 81
P+F NP+P + P L + LRHV + +E G+P SA+
Sbjct: 16 PRFPTPHNPRPAVAIEAQHSFPHGLLARAACQPLRHVAAPAEGEGEEVEDLGTP---SAA 72
Query: 82 AVASAIRRTST-SPIEFLQTIETDQKRC----NLVLPSPDFQRLCVEQLHLFRRIVDPDA 136
AVA AIRR S+ SP+ F + + ++ PS DF+RLC EQL +FR +V DA
Sbjct: 73 AVAEAIRRASSASPVRFRRVHREENEKLRGEGGFTEPSADFRRLCGEQLEMFRVVVSRDA 132
Query: 137 VLSVYVRPAGSYVMDRLELRRVVSYPGVNAT--DIVVLVGNFNMPAGLRAAEAALSSQQV 194
VLSVYVRPAGSY+MD+LELRRV YP N + D V+LVGNF + AGLRAAEA L Q+
Sbjct: 133 VLSVYVRPAGSYIMDQLELRRVALYPETNVSKGDTVILVGNFTISAGLRAAEAFLVKHQM 192
Query: 195 QVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFD 254
+++ E AVV PMVKHPFVVGFLVAELP EL C + I S SF
Sbjct: 193 EIITEFGAVVLPMVKHPFVVGFLVAELP--ELVGCTKNSETSDIQIPSH--------SFL 242
Query: 255 TESHAIESFDHERMRVYKFSADQ-----------RLNAINICRSLAMAYVMDQKSMLLQQ 303
+S I + ++ S DQ + +A+ I R+LAMAYVMDQK+ LLQQ
Sbjct: 243 DKSSDITPYTKGEAWDFQTSGDQANSYAQLVTEWKNSALMISRTLAMAYVMDQKAYLLQQ 302
Query: 304 SSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQE 363
+SWQNN RMS LVEQIRGPL++I+ L+KMLS+H KR+EISYDIVED+M+QGD L+ LQ+
Sbjct: 303 ASWQNNIRMSGLVEQIRGPLANIRALAKMLSVHTKRNEISYDIVEDVMIQGDHLKDALQQ 362
Query: 364 LQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSL 423
+QDAV+LTK NIVRYNEETLKK+ S S R+ +NS K+ + S
Sbjct: 363 IQDAVYLTKVNIVRYNEETLKKIQGSPSS-----RTLPHYQSDPKNSSQKVDSLS---SH 414
Query: 424 DTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL 483
D+ D+ +PMPPL LAPL+ RPC++S VL DL A +PLA QQR ++++ +S L
Sbjct: 415 DSDNGDMVIPMPPLWLAPLQPQDTRPCDLSVVLEDLVGAAQPLAFRQQRTLDVTGISHPL 474
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIA 543
VAVEE ALRQALSNLIEGAL+RTQ+GG+V+I + APAG LVVIDDDGPDM YM +
Sbjct: 475 QVAVEESALRQALSNLIEGALLRTQLGGRVQIYAGEAPAGGILVVIDDDGPDMQYMTQMH 534
Query: 544 NFAAYS 549
A +
Sbjct: 535 CLAPFG 540
>gi|42572021|ref|NP_974101.1| chloroplast sensor kinase [Arabidopsis thaliana]
gi|332196583|gb|AEE34704.1| chloroplast sensor kinase [Arabidopsis thaliana]
Length = 445
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 254/438 (57%), Positives = 317/438 (72%), Gaps = 30/438 (6%)
Query: 27 PNYHPKFCASL-NPKPLTTSPKSLSSNGT------------SLRHVTRTLSNDDEPPAAG 73
PN H F S+ NP+P S K L+++ + LR+V T+SN++ P G
Sbjct: 16 PNLH--FSNSIPNPRPSNPSLKLLNASSSSSSSSSSSIFTRGLRYVNHTVSNEESEPGGG 73
Query: 74 SPMVSSASAVASAIRRTSTSPIEFLQTIETDQKRCNLVLPSPDFQRLCVEQLHLFRRIVD 133
MV+SASA+ASAIR ST+P+EF Q IE D + ++LPSPDFQRLC+EQL LFR+IVD
Sbjct: 74 ETMVASASAIASAIRGASTTPVEFTQMIEKDHLKTKIILPSPDFQRLCLEQLDLFRQIVD 133
Query: 134 PDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFNMPAGLRAAEAALSSQQ 193
P+AVLS+YVRPAGSYVMDRLELRRV YP VNA D+V+LVGNF +PAGLRAAEA+LSSQQ
Sbjct: 134 PNAVLSIYVRPAGSYVMDRLELRRVTCYPSVNAGDVVILVGNFGIPAGLRAAEASLSSQQ 193
Query: 194 VQVVPEQRAVVFPMVKHPFVVGFLVAELPL---MELQMCGTEEPDAAIGFQSSEEVYAFP 250
V++V + RA VFPMVKHPFVVGFLVAELP+ E + E+P F S EE YA P
Sbjct: 194 VELVSKHRAAVFPMVKHPFVVGFLVAELPVEAEEEEEEEEEEKPHGVNQFLSPEEAYALP 253
Query: 251 PSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNA 310
S +T+S ++ V F+ +QR AINI R+LAMAYVMDQK+MLLQQSSWQNN
Sbjct: 254 ASANTKSPRVKLPS-----VKVFTEEQRSYAINISRTLAMAYVMDQKTMLLQQSSWQNNV 308
Query: 311 RMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFL 370
RMS LVEQIRGPLS+++TLSKMLS H KR++IS+DIVED++VQGD+++ TL+ELQDAV L
Sbjct: 309 RMSKLVEQIRGPLSTMRTLSKMLSTHTKRNQISHDIVEDLIVQGDQIKDTLEELQDAVHL 368
Query: 371 TKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDI 430
TKANIVR+NEE LKK+N +H E+ RS+ + ++ + Q S LSL + D
Sbjct: 369 TKANIVRHNEEALKKINK---THNETRRSK----YEHKDPIDGSQISSTRLSLGSGLDDS 421
Query: 431 EMPMPPLALAPLKQNGIR 448
EMPMPPLALAPL+ + IR
Sbjct: 422 EMPMPPLALAPLQMHSIR 439
>gi|226494793|ref|NP_001148109.1| LOC100281717 [Zea mays]
gi|195615846|gb|ACG29753.1| ATP binding protein [Zea mays]
gi|223942835|gb|ACN25501.1| unknown [Zea mays]
gi|414886403|tpg|DAA62417.1| TPA: ATP binding protein [Zea mays]
Length = 619
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 270/553 (48%), Positives = 339/553 (61%), Gaps = 49/553 (8%)
Query: 25 FCPNYHPKFCAS---LNPKPLT-TSPKSLSSNGTSLRHVTRTLSNDDEPPAAGSPMVSS- 79
+CP + K S LNP P S ++ + LRHV D+E G V
Sbjct: 17 YCP--YSKLSVSIPTLNPLPRGPLSRRACACAHRYLRHVAS--PADEEEAGYGEGSVEGD 72
Query: 80 ------ASAVASAIRRTST-SPIEFL----QTIETDQKRCNLVLPSPDFQRLCVEQLHLF 128
A+AVA+ IRR S+ SP+ F + +E + L PSPDF+RLC EQL +F
Sbjct: 73 DLGPASAAAVAATIRRASSASPVRFRCVLGEAVEEPRGEEGLADPSPDFRRLCAEQLEIF 132
Query: 129 RRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVN---ATDIVVLVGNFNMPAGLRAA 185
R ++ DAVLSVYVRPAGSY+MD+LELRRV YPG+N D VLV NF++ +GLRAA
Sbjct: 133 RVLISRDAVLSVYVRPAGSYIMDQLELRRVALYPGINNLSEKDTPVLVCNFSISSGLRAA 192
Query: 186 EAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEE 245
EA L QQ++V+ E A+V PMVKHPFVVGFLV ELP E S
Sbjct: 193 EAFLVKQQMEVIREFGAIVLPMVKHPFVVGFLVVELP----------ELHGGRAMNSYTA 242
Query: 246 VYAFPP------SFDTESHA---IESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQ 296
PP S D H I+++ + + + + +A+ I R+LAMAYVMDQ
Sbjct: 243 DTELPPNTFMDKSSDVTPHTAWDIQTYGDQAKGYSQLVNEWKNSALMISRTLAMAYVMDQ 302
Query: 297 KSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDR 356
K+ LLQQ+SWQNN RMS LVEQI GPLSSI+ L+KMLS H KRSEI YDI+ED++ QGD
Sbjct: 303 KAYLLQQTSWQNNVRMSGLVEQIWGPLSSIRALAKMLSFHTKRSEIPYDIIEDMLTQGDH 362
Query: 357 LRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQN 416
++ LQ++QDAV+LTKANIVR NEETLK + S HP S + GN Q
Sbjct: 363 MKDALQQIQDAVYLTKANIVRSNEETLKTIQRS--PHPSRTLSDY-----KSVPGNDSQK 415
Query: 417 SCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL 476
L+L + D+ MPMPPL LAPL+ RPC++ DVL DL PLA+ QQR ++L
Sbjct: 416 LDPVLALSSDGYDMVMPMPPLWLAPLQHQYDRPCDLCDVLKDLVAGALPLAYKQQRTLDL 475
Query: 477 SELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+E+S L VAVEE ALR+ALSNLIEGAL+RTQ GG V+I + APAG ALVVIDDDGPDM
Sbjct: 476 TEISHPLHVAVEESALRKALSNLIEGALLRTQHGGVVQICAVEAPAGGALVVIDDDGPDM 535
Query: 537 HYMVIIANFAAYS 549
YM + + A +
Sbjct: 536 QYMTQMRSLAPFG 548
>gi|217074886|gb|ACJ85803.1| unknown [Medicago truncatula]
Length = 458
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 244/407 (59%), Positives = 301/407 (73%), Gaps = 11/407 (2%)
Query: 64 SNDDEPPAAGSPMVSSASAVASAIRRTSTSPIEFLQTIETDQKRCNLVLPSPDFQRLCVE 123
S+DD + + +SS A+ASAIR+ TSP+EF Q +E R LVLPSPDF RLC++
Sbjct: 44 SDDDHRNNSTTLTLSSTRALASAIRKVPTSPVEFTQRLEK-HPRNGLVLPSPDFHRLCLQ 102
Query: 124 QLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATD----IVVLVGNFNMP 179
QL LFRRIV P++ LSVYVRPAGSYVMD+LELRRV YPG +A I +LV +FN+P
Sbjct: 103 QLQLFRRIV-PESFLSVYVRPAGSYVMDQLELRRVAVYPGGDAESEEEGIAILVSHFNVP 161
Query: 180 AGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIG 239
AGLR+AE ALS QV+VVPE +AVV PMVKHPFVVGFLVAELPL+EL+ C + D
Sbjct: 162 AGLRSAETALSELQVKVVPECKAVVLPMVKHPFVVGFLVAELPLVELETCVKGQSDGLNN 221
Query: 240 FQSSEEVYAFPPSFDTESHAIE----SFDHERMRVYKFSADQRLNAINICRSLAMAYVMD 295
S +E Y+ PP D + + E E + + F+ADQR NA++I +SLAMAYVMD
Sbjct: 222 HVSGKEDYSLPPFLDLDKKSWEIQTLRMKDEPVGMCNFTADQRSNAVDISQSLAMAYVMD 281
Query: 296 QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGD 355
QK+MLLQQS+WQNN RM+NLVEQIRGPLSSIQTL K+LS K+SEISYDIVEDI+ GD
Sbjct: 282 QKAMLLQQSTWQNNIRMNNLVEQIRGPLSSIQTLGKILSTQTKKSEISYDIVEDILALGD 341
Query: 356 RLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQ 415
RL LQ+LQDAV+LTK NI+RYNEE++KKMN S + ES++SQL + R+ S NK+
Sbjct: 342 RLSDVLQQLQDAVYLTKGNILRYNEESIKKMNGSNHIFSESVKSQLLDGSPRDGSVNKMH 401
Query: 416 NSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEA 462
S +PLSL A+DIEMP+PPLALAPL+ +GIR CNVS+VL DL +
Sbjct: 402 KSSEPLSLGAAAQDIEMPLPPLALAPLR-HGIRSCNVSEVLADLVDT 447
>gi|125579071|gb|EAZ20217.1| hypothetical protein OsJ_35821 [Oryza sativa Japonica Group]
Length = 576
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 254/546 (46%), Positives = 326/546 (59%), Gaps = 70/546 (12%)
Query: 31 PKFCASLNPKPLT------TSPKSLSSNGTS--LRHVTRTLSND-DEPPAAGSPMVSSAS 81
P+F NP+P + P L + LRHV + +E G+P SA+
Sbjct: 16 PRFPTPHNPRPAVAIEAQHSFPHGLLARAACQPLRHVAAPAEGEGEEVEDLGTP---SAA 72
Query: 82 AVASAIRRTST-SPIEFLQTIETDQKRC----NLVLPSPDFQRLCVEQLHLFRRIVDPDA 136
AVA AIRR S+ SP+ F + + ++ PS DF+RLC EQL +FR ++ DA
Sbjct: 73 AVAEAIRRASSASPVRFRRVHREENEKLRGEGGFTEPSTDFRRLCGEQLEMFRVVISRDA 132
Query: 137 VLSVYVRPAGSYVMDRLELRRVVSYPGVNAT--DIVVLVGNFNMPAGLRAAEAALSSQQV 194
VLSVYVRPAGSY+MD+LELRRV YP N + D V+LVGNF + AGLRAAEA L Q+
Sbjct: 133 VLSVYVRPAGSYIMDQLELRRVALYPETNVSKGDTVILVGNFTISAGLRAAEAFLVKHQM 192
Query: 195 QVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFD 254
+++ E AVV PMVKHPFVVGFLVAELP EL C + I S SF
Sbjct: 193 EIITEFGAVVLPMVKHPFVVGFLVAELP--ELVGCTKNSETSDIQIPSH--------SFL 242
Query: 255 TESHAIESFDHERMRVYKFSADQ-----------RLNAINICRSLAMAYVMDQKSMLLQQ 303
+S I + ++ S DQ + +A+ I R+LAMAYVMDQ
Sbjct: 243 DKSSDITPYTKGETWDFQTSGDQANSYAQLVTEWKNSALMISRTLAMAYVMDQ------- 295
Query: 304 SSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQE 363
IRGPL++I+ L+KMLS+H KR+EISYDIVED+M+QGD L+ LQ+
Sbjct: 296 ---------------IRGPLANIRALAKMLSVHTKRNEISYDIVEDVMIQGDHLKDALQQ 340
Query: 364 LQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSL 423
+QDAV+LTK NIVRYNEETLKK+ S S R+ +NS K+ + S
Sbjct: 341 IQDAVYLTKVNIVRYNEETLKKIQGSPSS-----RTLPHYQSDPKNSSQKVDSLS---SH 392
Query: 424 DTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL 483
D+ D+ +PMPPL LAPL+ RPC++S VL DL A +PLA QQR ++++ +S L
Sbjct: 393 DSDNGDMVIPMPPLWLAPLQPQDARPCDLSVVLEDLVGAAQPLAFRQQRTLDVTGISHPL 452
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIA 543
VAVEE ALRQALSNLIEGAL+RTQ+GG+V+I + APAG LVVIDDDGPDM YM +
Sbjct: 453 QVAVEESALRQALSNLIEGALLRTQLGGRVQIYAGEAPAGGILVVIDDDGPDMQYMTQMH 512
Query: 544 NFAAYS 549
A +
Sbjct: 513 CLAPFG 518
>gi|77554696|gb|ABA97492.1| ATP-binding region, ATPase-like domain-containing protein,
putative, expressed [Oryza sativa Japonica Group]
gi|108862513|gb|ABG21976.1| ATP-binding region, ATPase-like domain-containing protein,
putative, expressed [Oryza sativa Japonica Group]
gi|108862514|gb|ABG21977.1| ATP-binding region, ATPase-like domain-containing protein,
putative, expressed [Oryza sativa Japonica Group]
gi|108862515|gb|ABG21978.1| ATP-binding region, ATPase-like domain-containing protein,
putative, expressed [Oryza sativa Japonica Group]
gi|215694022|dbj|BAG89221.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 442
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 211/445 (47%), Positives = 270/445 (60%), Gaps = 48/445 (10%)
Query: 31 PKFCASLNPKPLT------TSPKSLSSNGTS--LRHVTRTLSND-DEPPAAGSPMVSSAS 81
P+F NP+P + P L + LRHV + +E G+P SA+
Sbjct: 16 PRFPTPHNPRPAVAIEAQHSFPHGLLARAACQPLRHVAAPAEGEGEEVEDLGTP---SAA 72
Query: 82 AVASAIRRTST-SPIEFLQTIETDQKRC----NLVLPSPDFQRLCVEQLHLFRRIVDPDA 136
AVA AIRR S+ SP+ F + + ++ PS DF+RLC EQL +FR ++ DA
Sbjct: 73 AVAEAIRRASSASPVRFRRVHREENEKLRGEGGFTEPSTDFRRLCGEQLEMFRVVISRDA 132
Query: 137 VLSVYVRPAGSYVMDRLELRRVVSYPGVNAT--DIVVLVGNFNMPAGLRAAEAALSSQQV 194
VLSVYVRPAGSY+MD+LELRRV YP N + D V+LVGNF + AGLRAAEA L Q+
Sbjct: 133 VLSVYVRPAGSYIMDQLELRRVALYPETNVSKGDTVILVGNFTISAGLRAAEAFLVKHQM 192
Query: 195 QVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFD 254
+++ E AVV PMVKHPFVVGFLVAELP EL C + I S SF
Sbjct: 193 EIITEFGAVVLPMVKHPFVVGFLVAELP--ELVGCTKNSETSDIQIPSH--------SFL 242
Query: 255 TESHAIESFDHERMRVYKFSADQ-----------RLNAINICRSLAMAYVMDQKSMLLQQ 303
+S I + ++ S DQ + +A+ I R+LAMAYVMDQK+ LLQQ
Sbjct: 243 DKSSDITPYTKGETWDFQTSGDQANSYAQLVTEWKNSALMISRTLAMAYVMDQKAYLLQQ 302
Query: 304 SSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQE 363
+SWQNN RMS LVEQIRGPL++I+ L+KMLS+H KR+EISYDIVED+M+QGD L+ LQ+
Sbjct: 303 ASWQNNIRMSGLVEQIRGPLANIRALAKMLSVHTKRNEISYDIVEDVMIQGDHLKDALQQ 362
Query: 364 LQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSL 423
+QDAV+LTK NIVRYNEETLKK+ S S R+ +NS K+ + S
Sbjct: 363 IQDAVYLTKVNIVRYNEETLKKIQGSPSS-----RTLPHYQSDPKNSSQKVDSLS---SH 414
Query: 424 DTPAKDIEMPMPPLALAPLKQNGIR 448
D+ D+ +PMPPL LAPL+ R
Sbjct: 415 DSDNGDMVIPMPPLWLAPLQPQDAR 439
>gi|414886402|tpg|DAA62416.1| TPA: hypothetical protein ZEAMMB73_581571 [Zea mays]
Length = 450
Score = 325 bits (833), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 210/452 (46%), Positives = 266/452 (58%), Gaps = 49/452 (10%)
Query: 25 FCPNYHPKFCAS---LNPKPLT-TSPKSLSSNGTSLRHVTRTLSNDDEPPAAGSPMVSS- 79
+CP + K S LNP P S ++ + LRHV D+E G V
Sbjct: 17 YCP--YSKLSVSIPTLNPLPRGPLSRRACACAHRYLRHVAS--PADEEEAGYGEGSVEGD 72
Query: 80 ------ASAVASAIRRTST-SPIEFL----QTIETDQKRCNLVLPSPDFQRLCVEQLHLF 128
A+AVA+ IRR S+ SP+ F + +E + L PSPDF+RLC EQL +F
Sbjct: 73 DLGPASAAAVAATIRRASSASPVRFRCVLGEAVEEPRGEEGLADPSPDFRRLCAEQLEIF 132
Query: 129 RRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVN---ATDIVVLVGNFNMPAGLRAA 185
R ++ DAVLSVYVRPAGSY+MD+LELRRV YPG+N D VLV NF++ +GLRAA
Sbjct: 133 RVLISRDAVLSVYVRPAGSYIMDQLELRRVALYPGINNLSEKDTPVLVCNFSISSGLRAA 192
Query: 186 EAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELP------LMELQMCGTEEPDAAIG 239
EA L QQ++V+ E A+V PMVKHPFVVGFLV ELP M TE P
Sbjct: 193 EAFLVKQQMEVIREFGAIVLPMVKHPFVVGFLVVELPELHGGRAMNSYTADTELPPNTFM 252
Query: 240 FQSSEEVYAFPPSFDTESHA---IESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQ 296
+SS D H I+++ + + + + +A+ I R+LAMAYVMDQ
Sbjct: 253 DKSS----------DVTPHTAWDIQTYGDQAKGYSQLVNEWKNSALMISRTLAMAYVMDQ 302
Query: 297 KSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDR 356
K+ LLQQ+SWQNN RMS LVEQI GPLSSI+ L+KMLS H KRSEI YDI+ED++ QGD
Sbjct: 303 KAYLLQQTSWQNNVRMSGLVEQIWGPLSSIRALAKMLSFHTKRSEIPYDIIEDMLTQGDH 362
Query: 357 LRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQN 416
++ LQ++QDAV+LTKANIVR NEETLK + S HP S + GN Q
Sbjct: 363 MKDALQQIQDAVYLTKANIVRSNEETLKTIQRSP--HPSRTLSDY-----KSVPGNDSQK 415
Query: 417 SCKPLSLDTPAKDIEMPMPPLALAPLKQNGIR 448
L+L + D+ MPMPPL LAPL+ R
Sbjct: 416 LDPVLALSSDGYDMVMPMPPLWLAPLQHQYDR 447
>gi|294461995|gb|ADE76553.1| unknown [Picea sitchensis]
Length = 316
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 128/257 (49%), Positives = 176/257 (68%), Gaps = 9/257 (3%)
Query: 294 MDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQ 353
MDQ+++LLQQ+SWQ RMSNL+EQI GPLS+I+TLSKML H+KRSEI +D++E+I+VQ
Sbjct: 1 MDQRALLLQQTSWQKGVRMSNLMEQIHGPLSNIRTLSKMLIPHLKRSEIPHDLLENILVQ 60
Query: 354 GDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNK 413
G+ ++G LQELQDA + TKAN++ + EE L ++ S+P S+L + FS + K
Sbjct: 61 GEHMKGLLQELQDAFYYTKANLMHFREEDLNRIQR-VRSNP---FSRLGHAFSDYDYNAK 116
Query: 414 LQNSCKPLSLDTPAK-DIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQR 472
SL + + D+E+PMPPLALA L+Q+ +RPCNVS +L DL A LAH QQ+
Sbjct: 117 ----STAFSLGSTVREDLELPMPPLALAALQQSNVRPCNVSKLLSDLVNAGDALAHSQQQ 172
Query: 473 QVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDD 532
++L E + L A+EE ALRQALSNL++ AL+R GG V++ + AP G LVVIDD+
Sbjct: 173 TLQLIECTPLLQAAIEETALRQALSNLLDSALLRVPGGGWVKVEATEAPGGGVLVVIDDN 232
Query: 533 GPDMHYMVIIANFAAYS 549
GPDM M + A +
Sbjct: 233 GPDMSLMTQTHSLAPFG 249
>gi|168038002|ref|XP_001771491.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677218|gb|EDQ63691.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 601
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 147/461 (31%), Positives = 233/461 (50%), Gaps = 65/461 (14%)
Query: 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLV 173
S +F LC EQL L + IV A +VY+RPA SY +LE + YP +V+
Sbjct: 120 SAEFLALCTEQLGLCQDIVGTPARFTVYIRPAESYSTGQLEFHCIAVYPSHQDELLVLKQ 179
Query: 174 GNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEE 233
+ +P L AEA L +Q+V V A++ PMVK F++GF+V E + + +
Sbjct: 180 SDTLVPISL--AEAKLINQEVVEVANGSAILLPMVKDLFLIGFIVVEG--VTTRSSTSSS 235
Query: 234 PDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAIN-ICRSLAMAY 292
P AA + + V+ PP ER V + Q+L+ ++ I +LA+A
Sbjct: 236 PKAA-KLKPIKPVW--PPK------------KERSPVAIPLSKQQLSELSKIALTLALAC 280
Query: 293 VMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMV 352
V+DQ+++LLQ+S+ + ++ L+EQ + PL +I+TLS+++ KR EIS D++EDI+V
Sbjct: 281 VVDQRALLLQKSNMKKVEQIDGLLEQAQAPLQAIRTLSQLMLPQFKRGEISRDLIEDILV 340
Query: 353 QGDRLRGTLQELQDAVFLTK-------------ANIVRYNEETLKKMNNSAYSHPESIRS 399
QG R++ LQ+LQ+ +TK N+ E L N +SH E+
Sbjct: 341 QGARMKDVLQQLQN---VTKSGPSIIQSSQDWEGNVEELPESKLASENRRLHSHGEN--- 394
Query: 400 QLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGI-RPCNVSDVLGD 458
++N R+ S P + D+E PMPPL LAP+ + I RPC+V+ VL
Sbjct: 395 --TDNIRRQGS--------LPAAHSDGRADVEAPMPPLTLAPVPEYDISRPCDVAKVLKQ 444
Query: 459 LFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSA 518
L EA LA+ + + ++++ S L AV +L + S+++E AL GG V +
Sbjct: 445 LGEAANGLANKRGQNLQITSCS-PLHAAVNSASLHRVCSHILETALQHAPRGGYVRANAM 503
Query: 519 AAPAGDALVVIDDD--------------GPDMHYMVIIANF 545
AP G L++I+D G D+ Y ++ +F
Sbjct: 504 RAPGGGVLIIIEDGDLSTKGFNSARAWRGSDLEYALLGEDF 544
>gi|224110868|ref|XP_002315663.1| predicted protein [Populus trichocarpa]
gi|222864703|gb|EEF01834.1| predicted protein [Populus trichocarpa]
Length = 108
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/88 (64%), Positives = 67/88 (76%), Gaps = 4/88 (4%)
Query: 56 LRHVTRTLSNDDEPPAAGSPMVSSASAVASAIRRTSTSPIEFLQTIETDQ----KRCNLV 111
+ HVT +LS+DDE GS +VSSASAVASAIRR S+S +EF+Q IE Q + LV
Sbjct: 21 IHHVTHSLSDDDEEAGGGSGLVSSASAVASAIRRGSSSSVEFVQRIEKGQNNNDNKTKLV 80
Query: 112 LPSPDFQRLCVEQLHLFRRIVDPDAVLS 139
LPSPDFQRLCV+QL LF RIVDPDA+LS
Sbjct: 81 LPSPDFQRLCVQQLDLFHRIVDPDAILS 108
>gi|255574672|ref|XP_002528245.1| hypothetical protein RCOM_0590050 [Ricinus communis]
gi|223532331|gb|EEF34130.1| hypothetical protein RCOM_0590050 [Ricinus communis]
Length = 117
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 51 SNGTSLRHVTRTLSNDDEPPAAGSP-MVSSASAVASAIRRTSTSPIEFLQTIETDQKRCN 109
+N +SL H + + EP P MVS A AVASAIR+TS SPIEF+Q +E K
Sbjct: 31 NNTSSLLHRVTCMLPNGEPELTSPPEMVSFALAVASAIRKTSNSPIEFVQKMEKSDKS-K 89
Query: 110 LVLPSPDFQRLCVEQLHLFRRIVDPDA 136
LVL S DF +LC+EQL LFRRIVDPDA
Sbjct: 90 LVLASLDFHKLCIEQLDLFRRIVDPDA 116
>gi|297729087|ref|NP_001176907.1| Os12g0292900 [Oryza sativa Japonica Group]
gi|255670236|dbj|BAH95635.1| Os12g0292900, partial [Oryza sativa Japonica Group]
Length = 96
Score = 77.0 bits (188), Expect = 3e-11, Method: Composition-based stats.
Identities = 36/54 (66%), Positives = 44/54 (81%)
Query: 169 IVVLVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELP 222
+++LVGNF + AGLRAAEA L Q++++ E AVV PMVKHPFVVGFLVAELP
Sbjct: 39 VLILVGNFTISAGLRAAEAFLVKHQMEIITEFGAVVLPMVKHPFVVGFLVAELP 92
>gi|220905649|ref|YP_002480960.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
7425]
gi|219862260|gb|ACL42599.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
7425]
Length = 437
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 147/352 (41%), Gaps = 102/352 (28%)
Query: 197 VPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTE 256
+P+ +V P++ + V+GFLV G E+ P +D E
Sbjct: 95 LPQVEQIVLPLIHNNLVLGFLV----------VGREDR----------------PWWDWE 128
Query: 257 SHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNAR----- 311
+E H +LA+A ++DQ+ L+QS +Q +
Sbjct: 129 QQQLEQVAH---------------------TLAIACLLDQRHQWLEQSHYQQRSMQQQQY 167
Query: 312 --MSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVF 369
++NL+ QIR PLS+I+TL K+L + + ++ I+ + +RL+G LQ+ A+
Sbjct: 168 SLLANLLHQIRNPLSTIRTLGKLLLKRFLPEDPNRNLASSIVQESERLQGLLQQFDQAID 227
Query: 370 LTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKD 429
L +A + E+ +++S L TP +
Sbjct: 228 LGEAAL--------------------------------EDLALPIESS----RLTTPTQQ 251
Query: 430 IEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQ----QRQVELSELSQSLLV 485
I +P P + ++PC+++++L L + +A Q Q+E L V
Sbjct: 252 ILLPAAPTT----GELQLQPCSLAELLTPLLLSATAIAQANQLDLQTQIETGPLPP---V 304
Query: 486 AVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPA-GDALVVIDDDGPDM 536
V+ AL++ALSNLI+ AL T GGKV I + PA + I D GP +
Sbjct: 305 TVDPQALKEALSNLIDNALKYTPAGGKVVIKLSRDPAQQQQCLTISDSGPGI 356
>gi|434394076|ref|YP_007129023.1| histidine kinase [Gloeocapsa sp. PCC 7428]
gi|428265917|gb|AFZ31863.1| histidine kinase [Gloeocapsa sp. PCC 7428]
Length = 445
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 123/281 (43%), Gaps = 54/281 (19%)
Query: 273 FSADQRLNAINICRSLAMAYVMDQK-----SMLLQQSSWQNNAR--MSNLVEQIRGPLSS 325
++ +R ++ ++LA+A V+D++ L QQ S R + NL+ Q+R PL++
Sbjct: 138 WNERERHEIEHVAQTLALARVLDKRREWYEQQLTQQQSLMQTQRDLLDNLLHQLRNPLTA 197
Query: 326 IQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKK 385
++T K+L + + + E+I+ + DR++ L++ + LT
Sbjct: 198 LRTFGKLLIKRFVPGDTNRKVAENIVRESDRIQELLKQFDRIIELTPQ------------ 245
Query: 386 MNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQN 445
+ P+ +S S PL L+ + +E PL L P
Sbjct: 246 ------TEPDPEKSL----------------SVTPLVLE---RTVEPVTKPLVLLPNVGE 280
Query: 446 GIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGAL 504
I PC+V D+L L + +A + V+ S++ L LV ALR+ SNL++ AL
Sbjct: 281 NIEPCSVVDILEPLLASANAIAQERNLNVQ-SDIPADLPLVYANRVALREVFSNLLDNAL 339
Query: 505 MRTQVGGKVEIVSAAAPAGD-ALVVIDDDGP-----DMHYM 539
T GG++ I P D + I D GP D+ +M
Sbjct: 340 KYTPAGGQIYI--QVEPKEDFQGIAISDTGPGIPAQDLEHM 378
>gi|186684154|ref|YP_001867350.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
PCC 73102]
gi|186466606|gb|ACC82407.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
PCC 73102]
Length = 448
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 122/262 (46%), Gaps = 50/262 (19%)
Query: 284 ICRSLAMAYVMDQK-----SMLLQQSSWQNNAR--MSNLVEQIRGPLSSIQTLSKMLSLH 336
I ++LA+A ++DQ+ L +Q Q R + NL+ Q R PL++++T K+L
Sbjct: 155 IAQTLAIACILDQRRAWFEQQLREQQILQEKQRDLLDNLLHQFRNPLTALRTFGKLLLKR 214
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
++ + + D+ I+ + DRL+ LQ+ + LT+ ++ + PE
Sbjct: 215 LRPGDSNRDVANSIVRESDRLQELLQQFDQVIDLTETDL-------------APLHLPEH 261
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVL 456
+ T KD + PPL L P + C+++D+L
Sbjct: 262 ----------------------EVFVEATIQKDAK---PPL-LLPGTGDKAVDCSLADIL 295
Query: 457 GDLFEAVRPLAHMQQRQVEL-SELSQ-SLLVAVEEPALRQALSNLIEGALMRTQVGGKVE 514
L + + +A Q+R+++L +E+ + S LV ALR+ L+N+I+ AL T GGK+
Sbjct: 296 EPLLISAKAIA--QERKLKLITEIQENSPLVRANIKALREVLTNIIDNALKYTPTGGKIL 353
Query: 515 IVSAAAPAGDALVVIDDDGPDM 536
I + A + I D+GP +
Sbjct: 354 IQAGQEKANFQGIAISDNGPGI 375
>gi|440681255|ref|YP_007156050.1| GAF sensor signal transduction histidine kinase [Anabaena
cylindrica PCC 7122]
gi|428678374|gb|AFZ57140.1| GAF sensor signal transduction histidine kinase [Anabaena
cylindrica PCC 7122]
Length = 450
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 120/265 (45%), Gaps = 57/265 (21%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLSSIQTLSKMLSLH 336
I +++A+A ++DQ+ L+Q Q + NL+ Q R PL++I+T K+L
Sbjct: 158 IAQTIAIACILDQRRAWLEQQLHQQQIFQEAQRDLLDNLLHQFRNPLTAIRTFGKLLFKR 217
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
++ + + D+ I+ + DRL+ LQ+ + L++A++
Sbjct: 218 LRPGDTNRDVATSIVRESDRLQELLQQFDQVIDLSEADL--------------------- 256
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSL---DTPAKDIEMPMPPLALAPLKQNGIRPCNVS 453
KP+SL ++ + PL L P + C+++
Sbjct: 257 ----------------------KPISLRESQVVEASVQKDVKPLLLLPGTGEKVIDCSLT 294
Query: 454 DVLGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGG 511
D+L L + + +A Q+R ++L +++ ++L LV AL++ LSN+I+ AL T GG
Sbjct: 295 DLLIPLLISTQAIA--QERNLDLIADIPENLPLVRANIKALQEVLSNIIDNALKYTPAGG 352
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDM 536
K+ I + + I D+GP +
Sbjct: 353 KIWIQAGQKRTNFQGIAISDNGPGI 377
>gi|332705417|ref|ZP_08425495.1| signal transduction histidine kinase [Moorea producens 3L]
gi|332355777|gb|EGJ35239.1| signal transduction histidine kinase [Moorea producens 3L]
Length = 473
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 121/284 (42%), Gaps = 45/284 (15%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQNNA-------RMSNLVEQIRGPLSSIQTLSKMLSL 335
+I R+LA+AYV++Q+ +Q Q+ + +L+ Q R PL +++T K+L
Sbjct: 149 SIARTLAIAYVIEQRQGWFEQQLTQHRRLQAKQRDMLDDLLHQFRNPLMALRTFGKLLLK 208
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
+ + +Y + I+ + DRL+ LQ+ + + + TL A S PE
Sbjct: 209 RLVPGDKNYPVASSIIRESDRLQELLQQFDACLDMNQTGTASL---TLPVATAEACSSPE 265
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
S L + +S +P S TP E P+ PL+ ++ DV
Sbjct: 266 S--DDLGEIYPTSHS--------EPHS--TPG---EFPLLTDKTLPLQLFAVK-----DV 305
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI 515
L L + + ++ S LV ALR+ LSNLI+ AL T GGK++I
Sbjct: 306 LEPLLISADAITQEANLELHCSIAPDLPLVKGNPKALREVLSNLIDNALKYTPAGGKIDI 365
Query: 516 ---VSAAAPAGDAL-VVIDDDGPDM-----------HYMVIIAN 544
V GDA+ + I D GP + HY + AN
Sbjct: 366 QVGVGQWLDHGDAIAIAISDTGPGIAPEDLDHLFERHYRGVQAN 409
>gi|414077476|ref|YP_006996794.1| two-component sensor histidine kinase [Anabaena sp. 90]
gi|413970892|gb|AFW94981.1| two-component sensor histidine kinase [Anabaena sp. 90]
Length = 451
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 118/262 (45%), Gaps = 50/262 (19%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSW-------QNNARMSNLVEQIRGPLSSIQTLSKMLSLH 336
I ++LA+A ++DQ+ LQ + + NL+ Q+R PL++I+T K+L
Sbjct: 159 IAKTLAIACIIDQRRAWLQHQLQQEQILQERQRDLLDNLLHQLRNPLTAIRTFGKLLFKR 218
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
M+ + + ++ I+ + DRL+ LQ+ + L A++ + PES
Sbjct: 219 MRPVDPNREVATSIVRESDRLQELLQQFDQVIDLNTADL-------------APLPLPES 265
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVL 456
+ ++ N ++ P+ P L P + C ++D+L
Sbjct: 266 -KVVINEN-------------------------VQKPVKPALLLPGTGEQLTDCCLADLL 299
Query: 457 GDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVE 514
L + + ++ Q+R ++L +E+S L LV V E AL + LSN+I+ AL T GGK+
Sbjct: 300 APLLISAQAIS--QERNLQLITEISHYLPLVKVNEKALTEVLSNIIDNALKYTPPGGKIL 357
Query: 515 IVSAAAPAGDALVVIDDDGPDM 536
+ + I D GP +
Sbjct: 358 VQCGQQKGNLQGIAISDTGPGI 379
>gi|427734983|ref|YP_007054527.1| histidine kinase [Rivularia sp. PCC 7116]
gi|427370024|gb|AFY53980.1| histidine kinase [Rivularia sp. PCC 7116]
Length = 437
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 125/277 (45%), Gaps = 52/277 (18%)
Query: 269 RVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRG 321
R +K S +R N+ +SLA+A +MD++ L Q+ M NL+ Q R
Sbjct: 131 RAWKES--ERTQIENVAQSLAIACIMDRRRAWLASQLHQHQIMQEKQLDLMDNLLHQFRN 188
Query: 322 PLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEE 381
PL++++T K+L+ + + + ++ I+ + DRL+ LQ+ +A+ LT
Sbjct: 189 PLTALRTFGKLLTKRLLPKDANSEVALSIVRESDRLKELLQKFDEAIDLT---------- 238
Query: 382 TLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAP 441
PE + L P + +E P L L
Sbjct: 239 ------------PEDL----------------LPAKLLPKNQVEVEATVEENKPLLLLNG 270
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNL 499
+Q I ++++VL L + + +A Q+R ++L +E+ ++ LV ALR+ LSN+
Sbjct: 271 AEQE-IFEFDLNEVLQPLLISAKAIA--QERSLKLITEIDNTVFLVRGNSQALREVLSNI 327
Query: 500 IEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
++ AL T GGK+ I S A + + I D+GP +
Sbjct: 328 VDNALKYTPAGGKILIESIKDKANFSGIAISDNGPGI 364
>gi|255087546|ref|XP_002505696.1| predicted protein [Micromonas sp. RCC299]
gi|226520966|gb|ACO66954.1| predicted protein [Micromonas sp. RCC299]
Length = 695
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 121/316 (38%), Gaps = 66/316 (20%)
Query: 117 FQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYP-------------- 162
FQ C Q+ L R + A +Y+R A S D L+L V S+P
Sbjct: 89 FQEFCDAQVELVGRALGRGARCMLYLRSA-SADGDALQLAEVASFPRSSRSSSGNDGAGP 147
Query: 163 ----------------GVNATDIVVLVGN------------------------FNMPAGL 182
G AT V L GN + +
Sbjct: 148 AGAWEVGGALRESDDFGAAATSFVELAGNEASTSGRGSSGSPRGSGTGGPGQAITLSGSI 207
Query: 183 -------RAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQ-MCGTEEP 234
AAEA L Q+V +P A+V P+ + +VG LV E+P + E
Sbjct: 208 DDSDGQSTAAEALLVKQRVFALPSANALVVPLSRDDTLVGLLVGEMPEGRVSSRVRKERV 267
Query: 235 DAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINIC-RSLAMAYV 293
AA G EV + S T + + +F D+R A+ +S+ A+
Sbjct: 268 KAASGGDVEVEVLS-AASAHTGEGEEKEKEAAADTAAQF-GDRRQAALTAAAKSIVAAWT 325
Query: 294 MDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQ 353
M +++ ++ Q + R++ + PL+ ++TL MLS H+K S D+ + I+ Q
Sbjct: 326 MHRRANYATAAAVQQDRRVAGFAYAAKEPLTVLRTLGGMLSSHLKPDTPSRDMADAIVAQ 385
Query: 354 GDRLRGTLQELQDAVF 369
GD L + L+ A++
Sbjct: 386 GDVLVSLSEALESALY 401
>gi|300863788|ref|ZP_07108715.1| histidine kinase [Oscillatoria sp. PCC 6506]
gi|300338216|emb|CBN53861.1| histidine kinase [Oscillatoria sp. PCC 6506]
Length = 478
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 117/242 (48%), Gaps = 47/242 (19%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLSSIQTLSKMLSLH 336
I SLA+A V+DQ+S +QQ + Q M NL+ Q + PL++++T K+L
Sbjct: 157 IAHSLAIACVLDQRSQWMQQQAGQQQQLQLQQYDTMHNLLHQFKSPLTALRTFGKLLMKR 216
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
+ + + ++ I+ + DRL LQ++ V + + N++
Sbjct: 217 LLVEDKNREVAVSIVRESDRLSELLQQIDRTVDIGEKNLI-------------------- 256
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEM-PMPPLALAPLKQNGIRPCNVSDV 455
+ SQL E K+QNS + +E+ P + L P N PC+V++V
Sbjct: 257 LPSQLEPTSKSE----KIQNS----------RLVEISEFPAVELLP-AANFSEPCSVAEV 301
Query: 456 LGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKV 513
L L E+ R +A +R ++L +E+ +L LV ALR+ LSNL++ AL TQ G ++
Sbjct: 302 LNPLLESARAIA--DERHLKLQAEIPNNLPLVQANAKALREVLSNLLDNALKYTQAGRQI 359
Query: 514 EI 515
I
Sbjct: 360 YI 361
>gi|17231474|ref|NP_488022.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
gi|17133117|dbj|BAB75681.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
Length = 454
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 119/277 (42%), Gaps = 78/277 (28%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQNNARMS-------------NLVEQIRGPLSSIQTL 329
+ ++LA+A ++DQ+ +W + NL+ Q R PL++++T
Sbjct: 158 KVGQTLAIACILDQRR------AWLQHQLHQQQILQEQQQDLLDNLLHQFRNPLTALRTF 211
Query: 330 SKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVR--------YNEE 381
K+L ++ + + D+ E+I+ + DRL+ LQ+ + + T+A++ R + E
Sbjct: 212 GKLLLKRLRPGDPNRDVGENIVRESDRLKELLQKFEQVIDWTEADLSRLVLPEKEGFVEA 271
Query: 382 TLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAP 441
T++K A P +G +L +
Sbjct: 272 TVQKEAKPALLLP--------------GTGEQLTD------------------------- 292
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNL 499
C V D+L L + + +A Q R ++L +++SQ L LV V AL++ LSN+
Sbjct: 293 --------CAVVDLLTPLLMSAKAIA--QDRHIKLKADISQDLPLVRVNIKALQEVLSNI 342
Query: 500 IEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
I+ AL T GGK+ I + + I D+GP +
Sbjct: 343 IDNALKYTPQGGKIYIQAGQEKLNFQGIAISDNGPGI 379
>gi|75907940|ref|YP_322236.1| histidine kinase [Anabaena variabilis ATCC 29413]
gi|75701665|gb|ABA21341.1| histidine kinase [Anabaena variabilis ATCC 29413]
Length = 454
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 119/277 (42%), Gaps = 78/277 (28%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQNNARMS-------------NLVEQIRGPLSSIQTL 329
+ ++LA+A ++DQ+ +W + NL+ Q R PL++++T
Sbjct: 158 KVGQTLAIACILDQRR------AWLQHQLHQQQILQEQQQDLLDNLLHQFRNPLTALRTF 211
Query: 330 SKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVR--------YNEE 381
K+L ++ + + D+ E+I+ + DRL+ LQ+ + + T+A++ R + E
Sbjct: 212 GKLLLKRLRPGDPNRDVGENIVRESDRLKELLQKFEQVIDWTEADLSRLVLPEKEGFVEA 271
Query: 382 TLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAP 441
T++K A P +G +L +
Sbjct: 272 TVQKEAKPALLLP--------------GTGEQLTD------------------------- 292
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNL 499
C V D+L L + + +A Q R ++L +++SQ L LV V AL++ L+N+
Sbjct: 293 --------CAVIDLLTPLLMSAKAIA--QDRHIKLKADISQDLPLVRVNIKALQEVLTNI 342
Query: 500 IEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
I+ AL T GGK+ I + + I D+GP +
Sbjct: 343 IDNALKYTPQGGKIYIQAGQEKLNFQGIAISDNGPGI 379
>gi|428298468|ref|YP_007136774.1| histidine kinase [Calothrix sp. PCC 6303]
gi|428235012|gb|AFZ00802.1| histidine kinase [Calothrix sp. PCC 6303]
Length = 456
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 120/262 (45%), Gaps = 51/262 (19%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLSSIQTLSKMLSLH 336
I ++LA+A ++D++ LQQ Q + NL+ Q R PL++++T K+L
Sbjct: 164 IAQTLAIACILDRQRTWLQQQLHQQQIFQEKQLDLLDNLLHQFRNPLTALRTFGKLLLKR 223
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
++ E + ++ I+ + DRL+ LQ+ +A+ LT +++
Sbjct: 224 LRAGEANREVATSIVRESDRLQELLQKFDEAIDLTGEDLIPL------------------ 265
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVL 456
+RSQ + ++ S +PL P L P C++ +VL
Sbjct: 266 LRSQ---------TEVVVEASVQPLK-------------PKLLLPGSDEIETDCDLMEVL 303
Query: 457 GDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVE 514
L ++ +A Q+R +EL +E L LV + +LR+ +SN+++ +L T GGKV
Sbjct: 304 QPLLDSAYAIA--QERNLELITEFPLKLPLVRINHKSLREVISNILDNSLKYTPNGGKVL 361
Query: 515 IVSAAAPAGDALVVIDDDGPDM 536
+ + G + I D+GP +
Sbjct: 362 VQTGLEKPGFQGIAISDNGPGI 383
>gi|412990732|emb|CCO18104.1| predicted protein [Bathycoccus prasinos]
Length = 461
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 87/187 (46%), Gaps = 10/187 (5%)
Query: 185 AEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSE 244
AE L +++ +P A+V P+ ++G LV ELPL ++ T P A G
Sbjct: 62 AETLLLNKEYFFLPSTNAMVVPLTLEGLLIGLLVGELPLPDIS---TNSPAAGFGSSGGG 118
Query: 245 EVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQS 304
+ S + + R +F +R N + + M ++++LL +
Sbjct: 119 KGKGK-----NRSKRRMNLNQNVDREEQFGERERQCLKNGAEAFVPVWAMQKRAVLLMKK 173
Query: 305 SWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEIS--YDIVEDIMVQGDRLRGTLQ 362
++ + + + R PLS+++T++ ML ++K E S D+ + IM QGD L Q
Sbjct: 174 TYAQEQNVGDYLYDSRVPLSALRTMTGMLKTYLKADEESPAGDMADAIMAQGDILATLSQ 233
Query: 363 ELQDAVF 369
+L+DA++
Sbjct: 234 QLEDALY 240
>gi|428318024|ref|YP_007115906.1| histidine kinase [Oscillatoria nigro-viridis PCC 7112]
gi|428241704|gb|AFZ07490.1| histidine kinase [Oscillatoria nigro-viridis PCC 7112]
Length = 463
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 118/252 (46%), Gaps = 53/252 (21%)
Query: 283 NICRSLAMAYVMDQKSMLLQQ---SSWQNNAR----MSNLVEQIRGPLSSIQTLSKMLSL 335
I R+LA+A ++DQ+S +QQ +S Q A+ M NL+ Q + PL++++T K+L+
Sbjct: 156 QIARTLALACILDQRSQWMQQELGTSRQIQAQVYDTMHNLLHQFKSPLTALRTFGKLLAR 215
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
+ + + ++ I+ + DRL+ L + V +A++ + + K M S E
Sbjct: 216 RLVPEDKNRNVAFSIVRESDRLQELLGQFDRTVDTGEAHLKLRSGTSEKAM-----SKVE 270
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
SIR PLSL +PA ++E C V++V
Sbjct: 271 SIRH-------------------SPLSL-SPAANLE----------------ESCFVAEV 294
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQSLL--VAVEEPALRQALSNLIEGALMRTQVGGKV 513
L L + +A +R ++L ++ L V+ + ALR+ LSNLI+ AL T G ++
Sbjct: 295 LKPLLISAEAIA--SERNLKLVADIEANLPPVSANDRALREVLSNLIDNALKYTPAGRQI 352
Query: 514 EI-VSAAAPAGD 524
I V A GD
Sbjct: 353 YIKVRYKAADGD 364
>gi|282901470|ref|ZP_06309395.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505]
gi|281193749|gb|EFA68721.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505]
Length = 466
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 106/260 (40%), Gaps = 48/260 (18%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLSSIQTLSKMLSLH 336
I +LA+A ++DQ+ + LQ Q A + NL+ Q R PL++I+T K+L
Sbjct: 168 IATTLAIACILDQRQVWLQHQLQQEKALQKEQGDLLDNLLHQFRNPLTAIRTFGKLLLKR 227
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
++ ++ + ++ +I+ Q DRL+ LQ ++ L N + P
Sbjct: 228 LRSNDTNREVAINIINQSDRLQELLQNF---------------DQVLDSKNRDTTAIPT- 271
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVL 456
L + E S P K + +P P C++ D+L
Sbjct: 272 ----LGLALTVEAS---------------PQKTAPLLLPGTGEEPTS------CHLKDIL 306
Query: 457 GDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIV 516
L + + LA + Q+ + + V AL + SN+I+ A+ T VGGK+ I
Sbjct: 307 LPLLASAQVLAQEKTIQLLIDIPNHLPPVKANIKALTEVFSNIIDNAIKYTPVGGKISIQ 366
Query: 517 SAAAPAGDALVVIDDDGPDM 536
S + I D GP +
Sbjct: 367 SLQKNTDFQGIAISDTGPGI 386
>gi|158334143|ref|YP_001515315.1| histidine kinase [Acaryochloris marina MBIC11017]
gi|158304384|gb|ABW26001.1| histidine kinase, putative [Acaryochloris marina MBIC11017]
Length = 451
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 7/107 (6%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQNNA-------RMSNLVEQIRGPLSSIQTLSKMLSL 335
I +LA+A ++DQ+S L + +Q A +SNL+ Q R PL++++TL K+L
Sbjct: 149 QIADTLALACILDQRSQWLANAQYQQRALQSEQHQTLSNLLHQFRNPLTALKTLGKLLHK 208
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEET 382
E + I I+ Q DRL L++ A+ L +A I ++ +T
Sbjct: 209 RFGEDENNRKIAASIVEQSDRLEEMLRQFDGAIDLGEAAIEPFDTDT 255
>gi|209525211|ref|ZP_03273754.1| histidine kinase [Arthrospira maxima CS-328]
gi|209494396|gb|EDZ94708.1| histidine kinase [Arthrospira maxima CS-328]
Length = 467
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 141/336 (41%), Gaps = 67/336 (19%)
Query: 234 PDAAIGFQSSEEVYAF---PP-----SFDTESHAIESFDHERM-----------RVYKFS 274
P I +EEV +F PP + D+ + H+RM R +
Sbjct: 84 PSETIARTETEEVESFGDPPPESDWQNVDSPQKQVLPLIHDRMVMGFLVTGRDDRPWNSQ 143
Query: 275 ADQRLNAINICRSLAMAYVMDQKSMLLQQS-------SWQNNARMSNLVEQIRGPLSSIQ 327
++L AI +L A ++D++S LQQ Q + L+ Q++ PL++++
Sbjct: 144 EQRQLRAI--AHTLTTACILDRRSQWLQQEVRQQYQLQSQEYQTLQGLLHQLKSPLTALR 201
Query: 328 TLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMN 387
T K+L + + +Y + ++I+ Q DR+ LQ++ D N++ +
Sbjct: 202 TFGKLLLKRLNPDDRNYKLADNILSQSDRIEELLQQV-DRTAERGENLLSL---PFSSIG 257
Query: 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGI 447
+S + E + N SRE ++ P+ L PA DI I
Sbjct: 258 DSQTATVEYV------NTSREPPTPVAKS---PVLL--PATDI----------------I 290
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMR 506
P V +++ L+ A +A +Q + ++E+ + V ALR+ +SNL++ AL
Sbjct: 291 EPIKVQEIINPLWTATCAIADERQL-ICIAEIPPKVPTVRGNAKALREVISNLLDNALKY 349
Query: 507 TQVGGKVEIVSAA------APAGDALVVIDDDGPDM 536
T GG++ + A PA + I D GP +
Sbjct: 350 TPPGGEIYLKVAQNYAIDHWPAPGVAIAISDTGPGI 385
>gi|282898289|ref|ZP_06306280.1| Histidine Kinase [Raphidiopsis brookii D9]
gi|281196820|gb|EFA71725.1| Histidine Kinase [Raphidiopsis brookii D9]
Length = 469
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 115/280 (41%), Gaps = 61/280 (21%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLSSIQTLSKMLSLH 336
I +LA+A ++DQ+ + LQ Q A + +L+ Q R PL++I+T K+L
Sbjct: 168 IATTLAIACILDQRQVWLQHQLQQEKALQKEQGDLLDSLLHQFRNPLTAIRTFGKLLLKR 227
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
++ ++ ++ +I+ Q DRL+ LQ+ D V +K
Sbjct: 228 LRSNDTDREVAINIINQSDRLQELLQKF-DQVLDSK------------------------ 262
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLD-TPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
SR+ + + S L+++ +P K + +P P C + D+
Sbjct: 263 ---------SRDTTAIPILGSA--LTVEASPDKTAPLLLPGTGEEPTS------CYLKDI 305
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI 515
L + + + LA + Q+ + + V ALR+ SN+I+ AL T GGK+ I
Sbjct: 306 LVPILASAQVLAQEKTIQLLIDIPNHLPPVKANTKALREVFSNIIDNALKYTPAGGKISI 365
Query: 516 VSAAAPAGDALVVIDDDGPDM-----------HYMVIIAN 544
S + I D GP + HY + AN
Sbjct: 366 QSLQKNTEIQGIAISDTGPGIPKEDLERLGERHYRGVQAN 405
>gi|303281440|ref|XP_003060012.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458667|gb|EEH55964.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 650
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 93/192 (48%), Gaps = 15/192 (7%)
Query: 185 AEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELP-------LMELQMCGTEEPDAA 237
AEA L Q+V +P A+V P+ + +VG LV E+P + + + +
Sbjct: 213 AEALLVKQRVFALPSTNALVVPLSRDNALVGLLVGEMPEGGGWKRRVSARTRAKRAKEGS 272
Query: 238 IGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQK 297
IGF+S EV + + A ++ D + F ++ R++ A+ M ++
Sbjct: 273 IGFESEPEVEVL----EEAAGAKDAADTAEV----FGDRRQAALTAAARAIVAAWAMHRR 324
Query: 298 SMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRL 357
+ ++ +++ R++ + PL++++TL MLS H+K S D+ E ++ QG+ L
Sbjct: 325 ADYATAAAVRSDRRVAGFTYAAKEPLTALKTLGGMLSSHLKPDTPSRDMAEAMLAQGETL 384
Query: 358 RGTLQELQDAVF 369
+EL+ A++
Sbjct: 385 ASLSEELESALY 396
>gi|376002454|ref|ZP_09780287.1| putative two-component sensor histidine kinase [Arthrospira sp. PCC
8005]
gi|375329194|emb|CCE16040.1| putative two-component sensor histidine kinase [Arthrospira sp. PCC
8005]
Length = 467
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 141/336 (41%), Gaps = 67/336 (19%)
Query: 234 PDAAIGFQSSEEVYAF---PP-----SFDTESHAIESFDHERM-----------RVYKFS 274
P I +EEV +F PP + D+ + H+RM R +
Sbjct: 84 PSETIARTETEEVESFGDPPPESDWQNVDSPQKQVLPLIHDRMVMGFLVTGRDDRPWNSQ 143
Query: 275 ADQRLNAINICRSLAMAYVMDQKSMLLQQS-------SWQNNARMSNLVEQIRGPLSSIQ 327
++L AI +L A ++D++S LQQ Q + L+ Q++ PL++++
Sbjct: 144 EQRQLRAI--AHTLTTACILDRRSQWLQQEVRQQYQLQSQEYQTLQGLLHQLKSPLTALR 201
Query: 328 TLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMN 387
T K+L + + +Y + ++I+ Q DR+ LQ++ D N++ +
Sbjct: 202 TFGKLLLKRLSPDDRNYKLADNILSQSDRIEELLQQV-DRTAERGENLLSL---PFSSIG 257
Query: 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGI 447
+S + E + N SRE ++ P+ L PA DI I
Sbjct: 258 DSQTATVEYV------NTSREPPTPVAKS---PVLL--PATDI----------------I 290
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMR 506
P V +++ L+ A +A +Q + ++E+ + V ALR+ +SNL++ AL
Sbjct: 291 EPIKVQEIINPLWTATCAIADERQL-ICIAEIPPKVPTVRGNAKALREVISNLLDNALKY 349
Query: 507 TQVGGKVEIVSAA------APAGDALVVIDDDGPDM 536
T GG++ + A PA + I D GP +
Sbjct: 350 TPPGGEIYLKVAQNYAIDHWPAPGVAIAISDTGPGI 385
>gi|298491547|ref|YP_003721724.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae'
0708]
gi|298233465|gb|ADI64601.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae'
0708]
Length = 458
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 122/262 (46%), Gaps = 50/262 (19%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSW-------QNNARMSNLVEQIRGPLSSIQTLSKMLSLH 336
I + LA+A ++DQ+ LQQ + + NL+ Q R PL++I+T K+L
Sbjct: 158 IAKILAIACILDQRRAWLQQQLHQQQVLQEEQRDLLDNLLHQFRNPLTAIRTFGKLLFKR 217
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
++ ++ + D+ I+ + DRL+ LQ+ + LT +++ +A PES
Sbjct: 218 LRPADQNRDVATSIVRESDRLQELLQQFDQVIDLTSSDL-------------TAIPLPES 264
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVL 456
S++ AK PPL L P + C ++D+L
Sbjct: 265 -------------------KVVVEASVEKDAK------PPL-LLPGTGEDVTDCYLTDLL 298
Query: 457 GDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVE 514
L + + +A Q+R +EL +++ ++L LV ALR+ LSN+I+ AL T GG +
Sbjct: 299 LPLLISAQAIA--QERNLELIADIPENLPLVKANIKALREVLSNIIDNALKYTPAGGSIW 356
Query: 515 IVSAAAPAGDALVVIDDDGPDM 536
I + A + I+D+GP +
Sbjct: 357 IQAGQKKANFQGIAINDNGPGI 378
>gi|354568914|ref|ZP_08988075.1| histidine kinase [Fischerella sp. JSC-11]
gi|353539426|gb|EHC08913.1| histidine kinase [Fischerella sp. JSC-11]
Length = 438
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 111/271 (40%), Gaps = 45/271 (16%)
Query: 273 FSADQRLNAINICRSLAMAYVMDQKSMLLQ-------QSSWQNNARMSNLVEQIRGPLSS 325
++ +R +I R+LA+A ++DQ+ L+ + + NL+ Q R PL++
Sbjct: 133 WNEQERSRIESIARTLAIACILDQRRTWLEVQLHQQQILQEKQQDLLDNLLHQFRNPLTA 192
Query: 326 IQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKK 385
++T K+L ++ + + ++ E I+ + DRL+ L++ + + L N+
Sbjct: 193 LRTFGKLLLKRLRPGDPNREVAESIVRESDRLQELLKKFDEVIDLGVENL---------- 242
Query: 386 MNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQN 445
+ PE + +E+ PPL L P
Sbjct: 243 ---APLKLPEQEEIFVEATVEKEHK------------------------PPL-LLPGTGE 274
Query: 446 GIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALM 505
C ++D+L L + + +A + Q+ + S LV AL + SN+I+ AL
Sbjct: 275 KEADCYITDILQPLLISAQAIAQERNLQLTANIPSDLPLVRANRKALTEVFSNIIDNALK 334
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
T GGKV I + V I D GP +
Sbjct: 335 YTPAGGKVLIEAGQQKDNLQGVAITDTGPGI 365
>gi|334121190|ref|ZP_08495264.1| histidine kinase [Microcoleus vaginatus FGP-2]
gi|333455476|gb|EGK84125.1| histidine kinase [Microcoleus vaginatus FGP-2]
Length = 463
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 118/252 (46%), Gaps = 53/252 (21%)
Query: 283 NICRSLAMAYVMDQKSMLLQQ---SSWQNNAR----MSNLVEQIRGPLSSIQTLSKMLSL 335
I R+LA+A ++DQ+S +QQ +S Q A+ M NL+ Q + PL++++T K+L+
Sbjct: 155 QIARTLALACILDQRSQWMQQELGTSRQIQAQVYDTMHNLLHQFKSPLTALRTFGKLLAR 214
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
+ + + ++ I+ + DRL+ L + V +A++ + + A S+ E
Sbjct: 215 RLVPEDKNRNVAFSIVRESDRLQELLGQFDRTVDTGEAHL-----KLRSGTSEKAISNVE 269
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
SIR PLSL +PA +++ C V++V
Sbjct: 270 SIRH-------------------SPLSL-SPAANLQ----------------ESCFVAEV 293
Query: 456 LGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKV 513
L L + +A +R ++L ++L L V + ALR+ LSNLI+ AL T G ++
Sbjct: 294 LKPLLISAEAMA--SERNLKLVADLEADLPPVRANDRALREVLSNLIDNALKYTPAGRQI 351
Query: 514 EI-VSAAAPAGD 524
I V A GD
Sbjct: 352 YIKVRYKAADGD 363
>gi|423067846|ref|ZP_17056636.1| histidine kinase [Arthrospira platensis C1]
gi|406710589|gb|EKD05796.1| histidine kinase [Arthrospira platensis C1]
Length = 467
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 141/336 (41%), Gaps = 67/336 (19%)
Query: 234 PDAAIGFQSSEEVYAF---PP-----SFDTESHAIESFDHERM-----------RVYKFS 274
P I +EEV +F PP + D+ + H+RM R +
Sbjct: 84 PSENIARTETEEVESFGDQPPESDWQNVDSPQKQVLPLIHDRMVMGFLVTGRDDRPWNSQ 143
Query: 275 ADQRLNAINICRSLAMAYVMDQKSMLLQQS-------SWQNNARMSNLVEQIRGPLSSIQ 327
++L AI +L A ++D++S LQQ Q + L+ Q++ PL++++
Sbjct: 144 EQRQLRAI--AHTLTTACILDRRSQWLQQEVRQQYQLQSQEYQTLQGLLHQLKSPLTALR 201
Query: 328 TLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMN 387
T K+L + + +Y + ++I+ Q DR+ LQ++ D N++ +
Sbjct: 202 TFGKLLLKRLSPDDRNYKLADNILSQSDRIEELLQQV-DRTAERGENLLSL---PFSSIG 257
Query: 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGI 447
+S + E + N SRE ++ P+ L PA DI I
Sbjct: 258 DSQTATVEYV------NTSREPPTPVAKS---PVLL--PATDI----------------I 290
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMR 506
P V +++ L+ A +A +Q + ++E+ + V ALR+ +SNL++ AL
Sbjct: 291 EPIKVQEIINPLWTATCAIADERQL-ICIAEIPPKVPTVRGNAKALREVISNLLDNALKY 349
Query: 507 TQVGGKVEIVSAA------APAGDALVVIDDDGPDM 536
T GG++ + A PA + I D GP +
Sbjct: 350 TPPGGEIYLKVAQNYAIDHWPAPGVAIAISDTGPGI 385
>gi|384251843|gb|EIE25320.1| hypothetical protein COCSUDRAFT_40602 [Coccomyxa subellipsoidea
C-169]
Length = 293
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 54/84 (64%), Gaps = 4/84 (4%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE- 341
+ R L++A ++Q++ L + + + LVEQ+RGPLS+++TL ML + R+E
Sbjct: 12 KVARVLSLACSLEQRAALERARDAARSRHIGGLVEQVRGPLSALRTLGAML---VPRTED 68
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQ 365
++ D+ + I+VQG+RL+ + ELQ
Sbjct: 69 VTRDVADGIVVQGNRLQDLVLELQ 92
>gi|428214173|ref|YP_007087317.1| histidine kinase [Oscillatoria acuminata PCC 6304]
gi|428002554|gb|AFY83397.1| histidine kinase [Oscillatoria acuminata PCC 6304]
Length = 475
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 112/252 (44%), Gaps = 54/252 (21%)
Query: 273 FSADQRLNAINICRSLAMAYVMDQKSMLLQQSSW-------QNNARMSNLVEQIRGPLSS 325
++ +R+ +I +++A+A ++D++ L Q + + + NL+ Q+R PL++
Sbjct: 167 WTDRERMQIESIAQTIAIACILDRRQRWLSQQLRQHQRLQAEQHDLLDNLLHQVRSPLTA 226
Query: 326 IQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKK 385
++T K+L ++ + + DI I+ + DR++ LQ++ A+
Sbjct: 227 LRTFGKLLLKRLREPDPNRDIAGSILRESDRVQELLQQMNLAI----------------- 269
Query: 386 MNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQN 445
PE I + L+ L L PA D+E
Sbjct: 270 -------EPEEIAGVPEVQTEVPSETPMLEKRSPQLLL--PAFDVE-------------- 306
Query: 446 GIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSLLVAVEEP-ALRQALSNLIEGA 503
PC++ VL L + + +A +R +EL +++ L + + P ALR+ LSNLI+ A
Sbjct: 307 ---PCDILTVLEPLLISAQAIAS--ERHLELTTQIPAELPLVLASPKALREVLSNLIDNA 361
Query: 504 LMRTQVGGKVEI 515
L T GGK+ +
Sbjct: 362 LKYTPSGGKIYV 373
>gi|359461939|ref|ZP_09250502.1| histidine kinase [Acaryochloris sp. CCMEE 5410]
Length = 431
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 112/269 (41%), Gaps = 59/269 (21%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQNNA-------RMSNLVEQIRGPLSSIQTLSKMLSL 335
I +LA+A ++DQ+S L + +Q A +SNL+ Q R PL++++TL K+L
Sbjct: 129 QIADTLALACILDQRSQWLANAQYQQRALQSEQHQTLSNLLHQFRNPLTALKTLGKLLHK 188
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
+ + I I+ Q DRL L++ A+ + +A I
Sbjct: 189 RFGEDDNNRKIAASIVEQSDRLEEMLRQFDGAIDIGEAAI-------------------- 228
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
F + G+ Q + L P + E+ + P C D+
Sbjct: 229 -------EPFETDAWGSTPQPTPPALPPSLPLGEDELHLQP-------------CQFRDI 268
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQSLL--VAVEEPALRQALSNLIEGALMRTQVGGKV 513
L L ++ + ++Q+ ++L+ S L + + ALR+ SNL + AL T GG+V
Sbjct: 269 LQPLIQSA--VGRVEQKDLQLTVRIPSNLPPINADLSALREVCSNLFDNALKYTPAGGEV 326
Query: 514 ------EIVSAAAPAGDALVVIDDDGPDM 536
++ PA +++ D GP +
Sbjct: 327 QVEVCRQVTEGRQPA--QFLLVSDSGPGI 353
>gi|428226317|ref|YP_007110414.1| histidine kinase [Geitlerinema sp. PCC 7407]
gi|427986218|gb|AFY67362.1| histidine kinase [Geitlerinema sp. PCC 7407]
Length = 474
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 119/271 (43%), Gaps = 54/271 (19%)
Query: 284 ICRSLAMAYVMDQKSMLLQQ-------SSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLH 336
+ ++LA V+D++S Q Q + + LV Q R PL++++T K+L
Sbjct: 147 VAKTLAAGCVLDRRSHWFQSHYHQQQDVQRQQHETLDTLVHQFRNPLTALRTFGKLLLRR 206
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
+ + + D+ I+ + DRL QEL +V+ + TL+ +A P +
Sbjct: 207 LGMGDPNRDVASSIVRESDRL----QEL----------LVQIGQ-TLQPTPGTAL--PRT 249
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEM---PMPPL--ALAPLKQNGIRPCN 451
I S P +LD A+ E P P L + L +RPC
Sbjct: 250 IAP-----------------SPDPEALDVVAQRTEQQEAPQPQLLPSTGWLSAADVRPCE 292
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSELSQSLL--VAVEEPALRQALSNLIEGALMRTQV 509
+ +VL L + + +A Q+RQ+ L + ++ V ALR+ LSNL++ AL T
Sbjct: 293 ILEVLEPLLMSTQAIA--QERQITLHIVLPDVIQPVLANPQALREVLSNLLDNALKYTPP 350
Query: 510 GGKVEIVSAAAPAGDA----LVVIDDDGPDM 536
GG+V++ A + + + I D GP +
Sbjct: 351 GGRVQLEVGATRSTETGLQQAIAITDTGPGI 381
>gi|427729398|ref|YP_007075635.1| histidine kinase [Nostoc sp. PCC 7524]
gi|427365317|gb|AFY48038.1| histidine kinase [Nostoc sp. PCC 7524]
Length = 443
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 119/271 (43%), Gaps = 66/271 (24%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQNNAR-------------MSNLVEQIRGPLSSIQTL 329
NI ++LA+A ++DQ+ +W + + NL+ Q R PL++++T
Sbjct: 150 NIGQTLAIACILDQRR------AWLQHQLHQQQILQEQQRDLLDNLLHQFRNPLTALRTF 203
Query: 330 SKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNS 389
K+L ++ + + D+ E+I+ + DRL+ LQ+ + + + V + E L N
Sbjct: 204 GKLLLKRLRPGDPNRDVGENIVRESDRLKELLQKFDEVI-----DWVDADSELLSLPKNE 258
Query: 390 AYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSL--DTPAKDIEMPMPPLALAPLKQNGI 447
+ +Q KP L T ++I+
Sbjct: 259 IFVEA------------------TVQREAKPALLLPGTGEQEID---------------- 284
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALM 505
C+++D+L L + + +A Q++ +EL +++ ++L LV AL++ LSN+++ A+
Sbjct: 285 --CSLADLLAPLLVSAQAIA--QEKNLELIADIPRNLPLVKANIKALQEVLSNIMDNAIK 340
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
T GG + I A + I D GP +
Sbjct: 341 YTPPGGNIYIQLGREKANLQGIAISDTGPGI 371
>gi|428311851|ref|YP_007122828.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
gi|428253463|gb|AFZ19422.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
Length = 488
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 104/241 (43%), Gaps = 49/241 (20%)
Query: 284 ICRSLAMAYVMDQKSMLLQQS-------SWQNNARMSNLVEQIRGPLSSIQTLSKMLSLH 336
I R+L++AY+MDQ+ +Q Q R+ +L+ Q+R PL++++T K+L
Sbjct: 150 IARTLSIAYIMDQRRAWFEQQLTQASRLKAQQRDRLDDLLHQLRNPLTALRTFGKLLFKR 209
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
+ + + D+ I+ + DRL+ L+E F T N NE + A PE+
Sbjct: 210 LLPGDRNRDLASSILRESDRLQELLKE-----FDTYLNT---NETEQPPLLLPAAVQPEA 261
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVL 456
+ N+ R + +++ VL
Sbjct: 262 SPRLGTGNWCRVTGEESSPSIIP------------------------------ISITAVL 291
Query: 457 GDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVE 514
L + + +A Q+R + L S++ +L LV LR+ LSNLI+ AL T GGK++
Sbjct: 292 EPLIDTAKAIA--QERNLFLCSQIPSNLPLVRGNPKGLREVLSNLIDNALKYTPAGGKID 349
Query: 515 I 515
I
Sbjct: 350 I 350
>gi|428771937|ref|YP_007163725.1| histidine kinase [Cyanobacterium stanieri PCC 7202]
gi|428686216|gb|AFZ46076.1| histidine kinase [Cyanobacterium stanieri PCC 7202]
Length = 420
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 115/262 (43%), Gaps = 64/262 (24%)
Query: 284 ICRSLAMAYVMDQKSMLLQQ--SSWQN-----NARMSNLVEQIRGPLSSIQTLSKMLSLH 336
+ +++ A ++DQK + ++ +Q+ N + + Q+R PL++I+T K+L
Sbjct: 139 VAQTITFARLLDQKQQVSEEQLKRYQSLQKLQNDHLDDFFHQLRNPLTAIRTFGKLLIKR 198
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
+ + +Y I E I+ +GDRL+ +Q+ + + + + ++N + ES
Sbjct: 199 LLGDDQNYTIAEGIVREGDRLKDLIQDFSE------------DWKVVNNISNPSLEQTES 246
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVL 456
L+ N R + +++ ++
Sbjct: 247 TSFFLTENIQR---------------------------------------LEKVDLNKLI 267
Query: 457 GDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKV-- 513
L + + +A ++ +S++ + L L++ AL + L+NL++ A+ T GGK+
Sbjct: 268 IPLVQGISTIAK-EKSITFMSDIDEDLPLISTNPKALTEVLNNLLDNAVKYTPDGGKICL 326
Query: 514 EIVS-AAAPAGDALVV-IDDDG 533
EIV + PAG+ LV+ I D G
Sbjct: 327 EIVKQKSTPAGEKLVIEISDTG 348
>gi|409993251|ref|ZP_11276399.1| histidine kinase [Arthrospira platensis str. Paraca]
gi|291568944|dbj|BAI91216.1| two-component sensor histidine kinase [Arthrospira platensis
NIES-39]
gi|409935875|gb|EKN77391.1| histidine kinase [Arthrospira platensis str. Paraca]
Length = 467
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 134/332 (40%), Gaps = 67/332 (20%)
Query: 238 IGFQSSEEVYAFP-PS-----FDTESHAIESFD--HERM-----------RVYKFSADQR 278
I +EEV + P PS D ESH + H+RM R + ++
Sbjct: 88 IARTETEEVESVPDPSPESDWEDGESHQKQVLPLIHDRMVMGFLVTGRDDRPWNSQEQRQ 147
Query: 279 LNAINICRSLAMAYVMDQKSMLLQQS-------SWQNNARMSNLVEQIRGPLSSIQTLSK 331
L AI +L A ++D++S LQQ Q + L+ Q++ PL++++T K
Sbjct: 148 LRAI--AHTLTTACILDRRSQWLQQEVRQQYQLQSQEYQTLQGLLHQLKSPLTALRTFGK 205
Query: 332 MLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAY 391
+L + + +Y + ++I+ Q DR+ LQ++ ++ E L + S
Sbjct: 206 LLLKRLSPDDRNYKLADNILSQSDRMEELLQQV---------DLTAERGENLLSLPFS-- 254
Query: 392 SHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCN 451
SI + N+ + + PA DI I P
Sbjct: 255 ----SIEDSQTATVEYVNTSPEPPTPVAKSPVLLPATDI----------------IEPIK 294
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSEL-SQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
V +++ L+ A +A +Q + ++E+ Q V ALR+ +SNL++ AL T G
Sbjct: 295 VQEIINPLWTATCAIADERQL-ICIAEIPPQVPTVRGNAKALREVMSNLLDNALKYTPPG 353
Query: 511 GKVEIVSAA------APAGDALVVIDDDGPDM 536
G++ + A P + I D GP +
Sbjct: 354 GEIYLKVAQNYAINHWPDPGVGIAISDTGPGI 385
>gi|307152216|ref|YP_003887600.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
7822]
gi|306982444|gb|ADN14325.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
7822]
Length = 436
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 106/243 (43%), Gaps = 61/243 (25%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQNNA-------RMSNLVEQIRGPLSSIQTLSKMLSLH 336
I ++LA+ +DQ+ +Q Q A R+ NL+ Q+R PL++++T K+L
Sbjct: 152 IVKTLALGCFLDQRQEWYKQQLQQQYAKSAHQRDRLDNLLHQLRNPLTALRTFGKLLLKR 211
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
+ E ++V+ I+ + DR++ L++ ++
Sbjct: 212 LLADERDQNVVKGIIRESDRIQDLLRQFEE------------------------------ 241
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMP--MPPLALAPLKQNGIRPCNVSD 454
N+ EN G K SL P P +P + L+ + + +
Sbjct: 242 -----ENHLEGENIG-------KSTSLALPEAQANSPLLLPSITLS------LEFIAIDE 283
Query: 455 VLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEE--PALRQALSNLIEGALMRTQVGGK 512
VL L + + LA Q++Q+ ++ + L A++ ALR+ L+NLI+ A+ T GG+
Sbjct: 284 VLTPLLISAQALA--QEKQIGVTSTIPTNLPAIKANFAALREVLTNLIDNAIKYTPAGGQ 341
Query: 513 VEI 515
V++
Sbjct: 342 VDV 344
>gi|434396688|ref|YP_007130692.1| GAF sensor signal transduction histidine kinase [Stanieria
cyanosphaera PCC 7437]
gi|428267785|gb|AFZ33726.1| GAF sensor signal transduction histidine kinase [Stanieria
cyanosphaera PCC 7437]
Length = 440
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 122/284 (42%), Gaps = 61/284 (21%)
Query: 277 QRLNAI-NICRSLAMAYVMD------QKSMLLQQSSWQ-NNARMSNLVEQIRGPLSSIQT 328
Q L I I ++LA+A +D QK + Q+S Q R+ +L+ QIR PL++++T
Sbjct: 138 QELEQIEKIAQTLALARFLDHRYQWYQKQLAKQESLRQIEQDRLDDLLHQIRNPLTALRT 197
Query: 329 LSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNN 388
SK+L + + + + + I+ + DRL+ L++
Sbjct: 198 FSKLLIKRLLPEDRNQSVAKSILRESDRLQELLEQ------------------------- 232
Query: 389 SAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIR 448
F E + +N LS + ++P L P + +
Sbjct: 233 ----------------FETETQQKEEENKALTLSTTSVRLTTDLPQSSHFLLPGNISELE 276
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMRT 507
++ +VL L +++ +A Q+ ++ ++EL Q+L LV ALR+ L+NLI+ AL T
Sbjct: 277 AVSILEVLKILLISLQEIAAEQEIEL-IAELPQNLPLVIANAKALREVLNNLIDNALKYT 335
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSPP 551
GGKV I ++ + P+ ++ I + + Y P
Sbjct: 336 PTGGKVVIY----------IIEKQEQPEQSWLGIAISDSGYGIP 369
>gi|218247819|ref|YP_002373190.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
8801]
gi|218168297|gb|ACK67034.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
8801]
Length = 434
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 103/241 (42%), Gaps = 66/241 (27%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQNNA-------RMSNLVEQIRGPLSSIQTLSKMLSLH 336
I ++LA+A ++D++ Q+ Q R+ +L Q+R PL++++ SK+L
Sbjct: 151 IAKTLAIAGLLDRRQNWYQEQLRQQQGLKVQERDRLDDLFHQLRNPLTALRIFSKLLLKR 210
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
+K E S IV+ I+ + D L QEL A F + V N K + S S P +
Sbjct: 211 LKSDEKSRSIVDSIIRESDHL----QELIQA-FEGDQDTVTLN----AKASLSCASLPSA 261
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVL 456
LS P N+ DVL
Sbjct: 262 TSRTLS----------------------------------------------PVNIKDVL 275
Query: 457 GDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVE 514
L +++ +A Q++Q++L +++ + L V ALR+ L+NLI+ A+ T GG+V
Sbjct: 276 DPLLISIKSIA--QEKQIDLKADIPRDLPSVYANSQALREVLNNLIDNAIKYTPKGGQVR 333
Query: 515 I 515
+
Sbjct: 334 V 334
>gi|434405618|ref|YP_007148503.1| histidine kinase [Cylindrospermum stagnale PCC 7417]
gi|428259873|gb|AFZ25823.1| histidine kinase [Cylindrospermum stagnale PCC 7417]
Length = 459
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 118/282 (41%), Gaps = 61/282 (21%)
Query: 264 DHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSW-------QNNARMSNLV 316
DHE+ + + I +++A+A ++DQ+ LQQ + + NL+
Sbjct: 149 DHEQGEIQR-----------IAQTMAIACILDQRRAWLQQQLHQQQIFQEKQRDLLDNLL 197
Query: 317 EQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIV 376
Q R PL++++T K+L ++ ++ + D+ I+ + DRL+ L + + + LT+A++
Sbjct: 198 HQFRNPLTAVRTFGKLLLKRLRPADPNRDVGTSIVRESDRLKELLIQFDEVIDLTEADL- 256
Query: 377 RYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPP 436
L+K+ PES + + +F Q KP L
Sbjct: 257 -----ALRKL-------PES-KVFVEASF---------QKDAKPALL------------- 281
Query: 437 LALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLL--VAVEEPALRQ 494
L G + + V A Q+R ++L + L V V ALR+
Sbjct: 282 -----LPGTGEKTADCLLADLLDPLLVSAKAIAQERNLQLMANIPADLPPVQVNIKALRE 336
Query: 495 ALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
LSN+I+ AL T GGK+ I A + I D GP +
Sbjct: 337 VLSNIIDNALKYTNSGGKILIQVGQKRANFQGIAISDTGPGI 378
>gi|257060861|ref|YP_003138749.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
8802]
gi|256591027|gb|ACV01914.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
8802]
Length = 434
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 103/241 (42%), Gaps = 66/241 (27%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQNNA-------RMSNLVEQIRGPLSSIQTLSKMLSLH 336
I ++LA+A ++D++ Q+ Q R+ +L Q+R PL++++ SK+L
Sbjct: 151 IAKTLAIAGLLDRRQNWYQEQLRQQQGLKVQERDRLDDLFHQLRNPLTALRIFSKLLLKR 210
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
+K E S IV+ I+ + D L QEL A F + V N K + S S P +
Sbjct: 211 LKSDEKSRSIVDSIIRESDHL----QELIQA-FEGDQDTVTLN----AKASLSCASLPSA 261
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVL 456
LS P N+ DVL
Sbjct: 262 TSRTLS----------------------------------------------PVNIKDVL 275
Query: 457 GDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVE 514
L +++ +A Q++Q++L +++ + L V ALR+ L+NLI+ A+ T GG+V
Sbjct: 276 DPLLISIKSIA--QEKQIDLKADIPRDLPSVYANSQALREVLNNLIDNAIKYTPKGGQVR 333
Query: 515 I 515
+
Sbjct: 334 V 334
>gi|443662453|ref|ZP_21132942.1| his Kinase A domain protein [Microcystis aeruginosa DIANCHI905]
gi|443332096|gb|ELS46723.1| his Kinase A domain protein [Microcystis aeruginosa DIANCHI905]
Length = 418
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 92/234 (39%), Gaps = 48/234 (20%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q + WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLAEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQL 401
+ + I+ + DR+R + E + + + N +P
Sbjct: 193 GNDRAITGILRESDRVRDLIAEFEAQIQQEREN------------------YP------- 227
Query: 402 SNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFE 461
++D P + P L P + + P N+ D+L L
Sbjct: 228 --------------------TVDIPLLQAQSS-PTAFLLPAGSSQLTPINLHDILDPLLL 266
Query: 462 AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI 515
+ + +A + +E L+ P LR+ SNLI+ AL T GGKV +
Sbjct: 267 SAQAVAKERNLSLETIYGEDIALIRANIPGLREVFSNLIDNALKYTPAGGKVTV 320
>gi|254415162|ref|ZP_05028924.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Coleofasciculus chthonoplastes PCC 7420]
gi|196177968|gb|EDX72970.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Coleofasciculus chthonoplastes PCC 7420]
Length = 476
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 114/251 (45%), Gaps = 35/251 (13%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSW--------QNNARMSNLVEQIRGPLSSIQTLSKMLSL 335
I +L +AY+MD++ +Q W Q R+ +++ Q R PL++++T K+L
Sbjct: 150 IAGTLTLAYLMDRRRAWFEQE-WTQQRRLQVQQRDRLDDILHQFRNPLTALRTFGKLLLN 208
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
++ + ++++ I+ + DRL+ LQ+ +E L + ++ S P
Sbjct: 209 RLQPDDKNHNVAASIVRESDRLKELLQDF---------------DECLDQ--DAPTSEPL 251
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
++ + S ++ P++ + E P + L P K + +++V
Sbjct: 252 TLPASASAATCPLPESDETGKIVSPVN-----SEPETDAPAIPLLPGKTLIVESFTITEV 306
Query: 456 LGDLFEAVRPLAHMQQRQVELS-ELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKV 513
L L + + +A +R +EL + Q L V ALR+ L+NLI+ AL T GG++
Sbjct: 307 LEPLLISAQAIAG--ERDLELRYSIPQDLPPVRANARALREVLNNLIDNALKYTPAGGQI 364
Query: 514 EIVSAAAPAGD 524
++ + D
Sbjct: 365 DVEAGVGQPKD 375
>gi|411120056|ref|ZP_11392432.1| ATPase, histidine kinase/DNA gyrase B/HSP90-like protein
[Oscillatoriales cyanobacterium JSC-12]
gi|410710212|gb|EKQ67723.1| ATPase, histidine kinase/DNA gyrase B/HSP90-like protein
[Oscillatoriales cyanobacterium JSC-12]
Length = 487
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 76/369 (20%), Positives = 132/369 (35%), Gaps = 90/369 (24%)
Query: 180 AGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIG 239
A + A +Q + +QR +V P++ V G LV +
Sbjct: 113 ASTHSTTANAHTQMESAIADQRQIVLPLMHESMVFGLLVTQ------------------- 153
Query: 240 FQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSM 299
+ A E+++H+++ I +L++A VMDQ+
Sbjct: 154 ---------------RDDRAWEAWEHQQIE-------------RIATTLSLACVMDQRYQ 185
Query: 300 LLQQS-------SWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMV 352
QQ Q M NL+ Q+R L+++QT K++ + + SY++ I
Sbjct: 186 WGQQEREQEKLVQLQQRDLMDNLLHQLRNSLTALQTFGKLILRRLVPGDRSYELATSITR 245
Query: 353 QGDRLRGTLQELQ---DAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSREN 409
+ +RLR Q+++ D L+ T + + P S QL
Sbjct: 246 ETERLRELAQQIELVLDVGLLS----------TPRALPPGDSDQPNSDEEQLG------- 288
Query: 410 SGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHM 469
+ + P + +P + L P + C V VL L + +A
Sbjct: 289 -----EATLDPRPIHA--------LPTVGLLPGVALTLERCLVETVLEPLLASATTIAQE 335
Query: 470 QQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL--V 527
+ + +S V ALR+ +NLIE A+ T G + V A P A +
Sbjct: 336 KNISIWVSLPDDLPPVWANPQALREVFNNLIENAIKYTPTNGHI-WVEADVPDNKAYLEI 394
Query: 528 VIDDDGPDM 536
+ D GP +
Sbjct: 395 SVSDTGPGI 403
>gi|425470883|ref|ZP_18849743.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9701]
gi|389883318|emb|CCI36261.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9701]
Length = 418
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 91/234 (38%), Gaps = 48/234 (20%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQL 401
+ + I+ + DR+R + E + + Q
Sbjct: 193 SNDPAITGILRESDRVRDLIAEFEGQI------------------------------QQE 222
Query: 402 SNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFE 461
S N+ ++D P + P L P + + P ++ D+L L
Sbjct: 223 SENYP---------------TVDIPLLQAQSS-PTAFLLPAGSSQLTPIDIHDILDPLLL 266
Query: 462 AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI 515
+ + +A + +E L+ P LR+ SNLI+ AL T GGKV +
Sbjct: 267 SAQAVAKERNLSLERIYGEDIPLIRANIPGLREVFSNLIDNALKYTAAGGKVTV 320
>gi|425448782|ref|ZP_18828626.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
7941]
gi|389769417|emb|CCI05726.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
7941]
Length = 418
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 91/234 (38%), Gaps = 48/234 (20%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQL 401
+ + I+ + DR+R + E + + Q
Sbjct: 193 GNDPAITGILRESDRVRDLIAEFEAQI------------------------------QQE 222
Query: 402 SNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFE 461
S N+ ++D P + P L P + + P ++ D+L L
Sbjct: 223 SENYP---------------TVDIPLLQAQS-SPTTFLLPAGSSQLTPIDLHDILDPLLL 266
Query: 462 AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI 515
+ + +A + +E L+ P LR+ SNLI+ AL T GGKV +
Sbjct: 267 SAQAVAKERNLSLETIHGEDIPLIRANIPGLREVFSNLIDNALKYTPAGGKVTV 320
>gi|425462136|ref|ZP_18841610.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9808]
gi|389824896|emb|CCI25775.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9808]
Length = 418
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 91/234 (38%), Gaps = 48/234 (20%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQL 401
+ + I+ + DR+R + E + + Q
Sbjct: 193 GNDPAITGILRESDRVRDLIAEFEAQI------------------------------QQE 222
Query: 402 SNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFE 461
S N+ ++D P + P L P + + P ++ D+L L
Sbjct: 223 SENYP---------------TVDIPLLQAQS-SPTTFLLPAGSSQLTPIDLHDILDPLLL 266
Query: 462 AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI 515
+ + +A + +E L+ P LR+ SNLI+ AL T GGKV +
Sbjct: 267 SAQAVAKERNLSLETIHGEDIPLIRANIPGLREVFSNLIDNALKYTPAGGKVTV 320
>gi|425435679|ref|ZP_18816126.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9432]
gi|389679774|emb|CCH91492.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9432]
Length = 418
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 91/234 (38%), Gaps = 48/234 (20%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQL 401
+ + I+ + DR+R + E + + Q
Sbjct: 193 GNDPAITGILRESDRVRDLIAEFEAQI------------------------------QQE 222
Query: 402 SNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFE 461
S N+ ++D P + P L P + + P ++ D+L L
Sbjct: 223 SENYP---------------TVDIPLLQAQS-SPTTFLLPAGSSQLTPIDLHDILDPLLL 266
Query: 462 AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI 515
+ + +A + +E L+ P LR+ SNLI+ AL T GGKV +
Sbjct: 267 SAQAVAKERNLSLETIHGEDIPLIRANIPGLREVFSNLIDNALKYTPAGGKVTV 320
>gi|440752108|ref|ZP_20931311.1| his Kinase A domain protein [Microcystis aeruginosa TAIHU98]
gi|440176601|gb|ELP55874.1| his Kinase A domain protein [Microcystis aeruginosa TAIHU98]
Length = 418
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 91/234 (38%), Gaps = 48/234 (20%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQL 401
+ + I+ + DR+R + E + + Q
Sbjct: 193 GNDPAITGILRESDRVRDLIAEFEAQI------------------------------QQE 222
Query: 402 SNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFE 461
S N+ ++D P + P L P + + P ++ D+L L
Sbjct: 223 SENYP---------------TVDIPLLQAQS-SPTTFLLPAGSSQLTPIDLHDILDPLLL 266
Query: 462 AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI 515
+ + +A + +E L+ P LR+ SNLI+ AL T GGKV +
Sbjct: 267 SAQAVAKERNLSLETIHGEDIPLIRANIPGLREVFSNLIDNALKYTPAGGKVTV 320
>gi|166364182|ref|YP_001656455.1| two-component sensor histidine kinase [Microcystis aeruginosa
NIES-843]
gi|425467066|ref|ZP_18846350.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9809]
gi|166086555|dbj|BAG01263.1| two-component sensor histidine kinase [Microcystis aeruginosa
NIES-843]
gi|389830238|emb|CCI27921.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9809]
Length = 418
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 90/234 (38%), Gaps = 48/234 (20%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQL 401
+ + I+ + DR+R + E + + Q
Sbjct: 193 GNDPAITGILRESDRVRDLIAEFEAQI------------------------------QQE 222
Query: 402 SNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFE 461
S N+ ++D P + P L P + P ++ D+L L
Sbjct: 223 SENYP---------------TVDIPLLQAQSS-PTAFLLPAGSGQLAPIDLHDILDPLLL 266
Query: 462 AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI 515
+ + +A + +E L+ P LR+ SNLI+ AL T GGKV +
Sbjct: 267 SAQAVAKERNLSLETIHGEDIPLICANIPGLREVFSNLIDNALKYTPAGGKVTV 320
>gi|428201817|ref|YP_007080406.1| signal transduction histidine kinase [Pleurocapsa sp. PCC 7327]
gi|427979249|gb|AFY76849.1| signal transduction histidine kinase [Pleurocapsa sp. PCC 7327]
Length = 451
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 109/245 (44%), Gaps = 51/245 (20%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQN-------NARMSNLVEQIRGPLSSIQTLSKMLSL 335
I +++A+A ++D++ QQ Q R+ +L+ Q+R PL++++T K+L
Sbjct: 155 QIAKTIALACLLDRRQSWYQQQLSQQYRIRRLEKDRLDSLLHQLRNPLTALRTFGKLLLK 214
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
+ + + +V+ I+ + DRLR LQE + + T + N TL+ +A S P
Sbjct: 215 RLLPEDRNQSVVQGILRESDRLRELLQEFEADIDATADDT---NAVTLE---TNALSLPA 268
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
+ + + ++ S + + K KD+ P
Sbjct: 269 A--ASVGDSPSLLLGNSLSLKATK-------VKDVLEP---------------------- 297
Query: 456 LGDLFEAVRPLAHMQQRQVELS-ELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKV 513
L ++ R +A Q++ + LS +L +L V ALR+ LSNLI+ AL T GG V
Sbjct: 298 ---LLDSARAIA--QEKDIHLSADLCATLPPVQANSKALREVLSNLIDNALKYTPAGGTV 352
Query: 514 EIVSA 518
I +
Sbjct: 353 HIATG 357
>gi|425441829|ref|ZP_18822096.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9717]
gi|389717340|emb|CCH98539.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9717]
Length = 418
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 90/234 (38%), Gaps = 48/234 (20%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQL 401
+ + ++ + DR+R + E + + Q
Sbjct: 193 GNDPAITGMLRESDRVRDLIAEFEAQI------------------------------QQE 222
Query: 402 SNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFE 461
S N+ ++D P + P L P + P ++ D+L L
Sbjct: 223 SENYP---------------TVDIPLLQAQSS-PTAFLLPAGSGQLTPIDLHDILDPLLL 266
Query: 462 AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI 515
+ + +A + +E L+ P LR+ SNLI+ AL T GGKV +
Sbjct: 267 SAQAVAKERNLSLETIHGEDIPLICANIPGLREVFSNLIDNALKYTPAGGKVTV 320
>gi|402847643|ref|ZP_10895918.1| two-component hybrid sensor and regulator [Rhodovulum sp. PH10]
gi|402502050|gb|EJW13687.1| two-component hybrid sensor and regulator [Rhodovulum sp. PH10]
Length = 586
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +++ V+ ++ EA +PLA +Q+++ + + +SL +A + +R+A+ NL+ A+ +
Sbjct: 429 PADLAAVVREVVEANQPLAAKKQQEI-VVDAPKSLAIACDHDRIREAIDNLLSNAIKYSA 487
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+GG+V + AA G A + + D GP M
Sbjct: 488 IGGEVTVTLAATAEG-ARIAVTDAGPGM 514
>gi|218439642|ref|YP_002377971.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
7424]
gi|218172370|gb|ACK71103.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
7424]
Length = 442
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 114/261 (43%), Gaps = 58/261 (22%)
Query: 283 NICRSLAMAYVMDQKS-------MLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSL 335
I ++LA+A +DQ+ + ++ NL+ Q+R PL++++T K+L
Sbjct: 150 KIVKTLAIACFLDQRQEWYQQQLQQQYLKNAHQRDQLDNLLHQLRNPLTALRTFGKLLLK 209
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
E ++++ I+ + DR++ L++ F +++I+ T + + PE
Sbjct: 210 RFLPDEKDQNVIKGIIRESDRIQDLLRQ-----FEQQSDILPQEPST-----ATVITLPE 259
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
+ + PL L P +ALA + P +V ++
Sbjct: 260 T-------------------ETHSPLLL-----------PSVALA------LEPVSVEEI 283
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVE 514
L L + + LA +Q QV +S++ +L + ALR+ SNLI+ A+ T GG++E
Sbjct: 284 LTPLLISAQALAQEKQIQV-ISKVPPNLPPIGANFKALREVFSNLIDNAIKYTPAGGEIE 342
Query: 515 IVSAAAPAGDAL--VVIDDDG 533
VS GD + I D G
Sbjct: 343 -VSIVFRLGDDWEGIQISDTG 362
>gi|404397614|ref|ZP_10989404.1| hypothetical protein HMPREF0989_03784 [Ralstonia sp. 5_2_56FAA]
gi|348612615|gb|EGY62229.1| hypothetical protein HMPREF0989_03784 [Ralstonia sp. 5_2_56FAA]
Length = 509
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 80/179 (44%), Gaps = 43/179 (24%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R LS +R S N+L
Sbjct: 269 AVLLTQA------EYALRETD------PVRVRESLSAIIARLQSTNRLTTQL-------- 308
Query: 427 AKDIEMPMPPLALAPLKQNGI-RPCNVSDVLGDLFEAV----RPLAHMQQRQVELSELSQ 481
LALA + G P D LGDL V PLA +++Q +L
Sbjct: 309 ----------LALARARHAGQDAPAETFD-LGDLARDVVVDALPLA--REKQQDLGWDDG 355
Query: 482 SLLVA---VEEPA-LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
L++A + PA LR+ALSNL+ A+ T GG++ V AAA ALV +DD GP M
Sbjct: 356 GLVMALPVIGYPAFLREALSNLVHNAIRYTPAGGRI-TVRAAADGDTALVCVDDTGPGM 413
>gi|309782918|ref|ZP_07677638.1| sensor histidine kinase [Ralstonia sp. 5_7_47FAA]
gi|308918342|gb|EFP64019.1| sensor histidine kinase [Ralstonia sp. 5_7_47FAA]
Length = 508
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 80/179 (44%), Gaps = 43/179 (24%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R LS +R S N+L
Sbjct: 268 AVLLTQA------EYALRETD------PVRVRESLSAIIARLQSTNRLTTQL-------- 307
Query: 427 AKDIEMPMPPLALAPLKQNGI-RPCNVSDVLGDLFEAV----RPLAHMQQRQVELSELSQ 481
LALA + G P D LGDL V PLA +++Q +L
Sbjct: 308 ----------LALARARHAGQDAPAETFD-LGDLARDVVVDALPLA--REKQQDLGWDDG 354
Query: 482 SLLVA---VEEPA-LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
L++A + PA LR+ALSNL+ A+ T GG++ V AAA ALV +DD GP M
Sbjct: 355 GLVMALPVIGYPAFLREALSNLVHNAIRYTPAGGRI-TVRAAADGDTALVCVDDTGPGM 412
>gi|332638567|ref|ZP_08417430.1| histidine protein kinase; sensor protein [Weissella cibaria KACC
11862]
Length = 456
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 437 LALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQAL 496
LA +P + + + P NV+++ ++FEA +P A Q++ +E+S S V +E +RQ L
Sbjct: 296 LAKSPERLSKVAPVNVANIATEIFEANKPAADTLGLQLQ-NEISPSFTVNQDESVVRQIL 354
Query: 497 SNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+NLI A+ + GG V+ V+A A + ++ + D G
Sbjct: 355 TNLIVNAIKYNRPGGLVK-VAAMVTASEFVMAVKDTG 390
>gi|288940033|ref|YP_003442273.1| integral membrane sensor signal transduction histidine kinase
[Allochromatium vinosum DSM 180]
gi|288895405|gb|ADC61241.1| integral membrane sensor signal transduction histidine kinase
[Allochromatium vinosum DSM 180]
Length = 471
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P ++ ++ DL E PLA ++++++ + + S++V + L Q ++NL++ A+ TQ
Sbjct: 323 PVDLVPLIEDLVELYEPLAAEREQRLDWTAGASSIVVEGDRDLLFQVMANLVDNAIKYTQ 382
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM 536
GG +++ +A G A V++ DDGP +
Sbjct: 383 PGGHIQLAVDSA-GGQARVLVADDGPGI 409
>gi|170078559|ref|YP_001735197.1| putative two-component sensor histidine kinase [Synechococcus sp.
PCC 7002]
gi|169886228|gb|ACA99941.1| putative two-component sensor histidine kinase [Synechococcus sp.
PCC 7002]
Length = 438
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 284 ICRSLAMAYVMDQKS-----MLLQQSSWQ--NNARMSNLVEQIRGPLSSIQTLSKMLSLH 336
I L +A V+DQ+ L QQ Q +L+ Q+R P +I T K+L
Sbjct: 140 IAEGLVLACVLDQQKSWATERLTQQQHLQALEQEHFHDLLHQLRNPTMAISTFGKLLLKR 199
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANI 375
+ +E +Y + E I+ + DRL+G L + + V L A I
Sbjct: 200 LLPTEKNYPVAEGIVRESDRLKGLLTQFSEEVDLLTAQI 238
>gi|386332235|ref|YP_006028404.1| sensory histidine kinase [Ralstonia solanacearum Po82]
gi|334194683|gb|AEG67868.1| sensory histidine kinase [Ralstonia solanacearum Po82]
Length = 503
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 78/176 (44%), Gaps = 37/176 (21%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R L+ +R S N+L +
Sbjct: 267 AVLLTQA------EYALRETD------PARVRESLTAIIARLQSTNRLTSQL-------- 306
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAV----RPLAHMQQRQVELSELSQS 482
LALA + G + LG+L +V PLA +Q+ + +
Sbjct: 307 ----------LALARARHTGEDAPPETFDLGELARSVVVDALPLAREKQQDLGWDDSGLD 356
Query: 483 LLVAVEE-PA-LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
L+ V PA LR+ALSNL+ A+ T GG++ V A A G ALV +DD GP M
Sbjct: 357 TLLPVSGYPAFLREALSNLVHNAIRYTPPGGRI-TVRAIADGGAALVCVDDTGPGM 411
>gi|407957788|dbj|BAM51028.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
Length = 409
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 55/101 (54%), Gaps = 7/101 (6%)
Query: 272 KFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLS 324
++ ++ + I +SLA+A ++DQ+ +Q+ + N + ++L+ Q+R PL+
Sbjct: 108 QWHGEEMMQLEAIAKSLAVACLLDQQQDWYRQAWEEQNQQYQWERQHWADLLHQLRNPLT 167
Query: 325 SIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQ 365
+++T SK+L S +VE I+ QG+ L+ LQ +
Sbjct: 168 ALKTFSKLLLKRWHGDNKSQQVVEGIVRQGEHLQELLQSFE 208
>gi|16329896|ref|NP_440624.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
gi|383321639|ref|YP_005382492.1| sensory transduction histidine kinase Hik2 [Synechocystis sp. PCC
6803 substr. GT-I]
gi|383324808|ref|YP_005385661.1| sensory transduction histidine kinase Hik2 [Synechocystis sp. PCC
6803 substr. PCC-P]
gi|383490692|ref|YP_005408368.1| sensory transduction histidine kinase Hik2 [Synechocystis sp. PCC
6803 substr. PCC-N]
gi|384435959|ref|YP_005650683.1| sensory transduction histidine kinase Hik2 [Synechocystis sp. PCC
6803]
gi|451814055|ref|YP_007450507.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
gi|1652382|dbj|BAA17304.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
gi|339272991|dbj|BAK49478.1| sensory transduction histidine kinase Hik2 [Synechocystis sp. PCC
6803]
gi|359270958|dbj|BAL28477.1| sensory transduction histidine kinase Hik2 [Synechocystis sp. PCC
6803 substr. GT-I]
gi|359274128|dbj|BAL31646.1| sensory transduction histidine kinase Hik2 [Synechocystis sp. PCC
6803 substr. PCC-N]
gi|359277298|dbj|BAL34815.1| sensory transduction histidine kinase Hik2 [Synechocystis sp. PCC
6803 substr. PCC-P]
gi|451780024|gb|AGF50993.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
Length = 434
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 55/101 (54%), Gaps = 7/101 (6%)
Query: 272 KFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLS 324
++ ++ + I +SLA+A ++DQ+ +Q+ + N + ++L+ Q+R PL+
Sbjct: 133 QWHGEEMMQLEAIAKSLAVACLLDQQQDWYRQAWEEQNQQYQWERQHWADLLHQLRNPLT 192
Query: 325 SIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQ 365
+++T SK+L S +VE I+ QG+ L+ LQ +
Sbjct: 193 ALKTFSKLLLKRWHGDNKSQQVVEGIVRQGEHLQELLQSFE 233
>gi|443316934|ref|ZP_21046360.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 6406]
gi|442783464|gb|ELR93378.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 6406]
Length = 489
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 54/96 (56%), Gaps = 9/96 (9%)
Query: 269 RVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQ-------QSSWQNNARMSNLVEQIRG 321
R +K + +L + +LA+A V+DQ+ +Q + Q + R+ +L+ Q+R
Sbjct: 149 RPWKVTERHQLE--RVAHTLALACVLDQRGQWIQAQLHEHRRDQAQQSERLHDLLHQVRN 206
Query: 322 PLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRL 357
PL++++T K+L+ ++ S+ ++ + I+ + DR+
Sbjct: 207 PLTALKTFGKLLTKRLEPSDKNHPLAAGIVRESDRM 242
>gi|326319275|ref|YP_004236947.1| histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860]
gi|323376111|gb|ADX48380.1| histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 461
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 23/127 (18%)
Query: 430 IEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQS------- 482
+E P ALA + Q+ +R +V + L L A R H + +V+L+EL++S
Sbjct: 270 LEGPAQAEALARIGQDALRAGHVLNQLLALARASRTRLHELEAEVDLAELARSVAADYAQ 329
Query: 483 --------LLVAVEEPA--------LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL 526
L VA + P L A+ NL+E AL T G +VEI + +A G A
Sbjct: 330 AAWQHGSALGVAADGPVAVRGNAVLLEMAVRNLVENALRHTPAGTRVEIQAGSAVGGGAW 389
Query: 527 VVIDDDG 533
+ + DDG
Sbjct: 390 LQVCDDG 396
>gi|300702864|ref|YP_003744465.1| histidine kinase [Ralstonia solanacearum CFBP2957]
gi|299070526|emb|CBJ41821.1| Sensor protein, histidine kinase [Ralstonia solanacearum CFBP2957]
Length = 503
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 78/176 (44%), Gaps = 37/176 (21%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R L+ +R S N+L +
Sbjct: 267 AVLLTQA------EYALRETD------PARVREGLAAIIARLQSTNRLTSQL-------- 306
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAV----RPLAHMQQRQVELSELSQS 482
LALA + G + LG+L +V PLA +Q+ + +
Sbjct: 307 ----------LALARARHTGQDAPPETFDLGELARSVVVDALPLAREKQQDLGWDDSGLD 356
Query: 483 LLVAVEE-PA-LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
L+ V PA LR+ALSNL+ A+ T GG++ V A A G ALV +DD GP M
Sbjct: 357 TLLPVSGYPAFLREALSNLVHNAIRYTPPGGRI-TVRAIADGGAALVCVDDTGPGM 411
>gi|241664448|ref|YP_002982808.1| histidine kinase [Ralstonia pickettii 12D]
gi|240866475|gb|ACS64136.1| histidine kinase [Ralstonia pickettii 12D]
Length = 508
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 80/180 (44%), Gaps = 43/180 (23%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R LS +R S N+L
Sbjct: 269 AVLLTQA------EYALRETD------PVRVRESLSAIIARLQSTNRLTTQL-------- 308
Query: 427 AKDIEMPMPPLALAPLKQNGI-RPCNVSDVLGDLFEAV----RPLAHMQQRQVELSELSQ 481
LALA + G P D LGDL V PLA +++Q +L
Sbjct: 309 ----------LALARARHAGQDAPAETFD-LGDLARDVVVDALPLA--REKQQDLGWDDG 355
Query: 482 SLLVA---VEEPA-LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMH 537
L++A + PA LR+ALSNL+ A+ T GG++ V A A ALV +DD GP M+
Sbjct: 356 GLVMALPVIGYPAFLREALSNLVHNAIRYTPAGGRI-TVRATADGDAALVCVDDTGPGMN 414
>gi|427718603|ref|YP_007066597.1| histidine kinase [Calothrix sp. PCC 7507]
gi|427351039|gb|AFY33763.1| histidine kinase [Calothrix sp. PCC 7507]
Length = 441
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 110/268 (41%), Gaps = 62/268 (23%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQNNAR-------------MSNLVEQIRGPLSSIQTLS 330
I ++LA+A ++DQ+ +W + + NL+ Q R PL++++T
Sbjct: 148 IAQTLAIACILDQRR------AWLQHQLHQQQILQEQQRDLLDNLLHQFRNPLTALRTFG 201
Query: 331 KMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSA 390
K+L ++ + + ++ ++I+ + DRL+ L + + LT+A++ TL N
Sbjct: 202 KLLLKRLRTGDPNRNVADNIVRESDRLKELLLKFDQVIDLTEADLA-----TLSLPQNEV 256
Query: 391 YSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPC 450
+ + F +E KP L L G +
Sbjct: 257 F---------VEATFPKE---------TKPALL------------------LPGTGEQET 280
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQ 508
+ V A Q+R ++L +++ +SL V AL++ LSN+I+ AL T
Sbjct: 281 ECALADLLAPLLVSAKAIAQERNLQLKAKIPRSLPRVRANIKALQEVLSNIIDNALKYTP 340
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM 536
GGK+ I A + I D GP +
Sbjct: 341 AGGKILIQVGREKANLQGIAISDTGPGI 368
>gi|284929408|ref|YP_003421930.1| signal transduction histidine kinase [cyanobacterium UCYN-A]
gi|284809852|gb|ADB95549.1| signal transduction histidine kinase [cyanobacterium UCYN-A]
Length = 439
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 271 YKFSADQRLNAINICRSLAMAYVMDQ-----KSMLLQQS--SWQNNARMSNLVEQIRGPL 323
Y + D+ I +LA+A +D+ K L QQ Q R+ NL Q+R PL
Sbjct: 134 YPWKQDELAQIKKIANTLAIARSLDKRQAFSKKQLHQQKLLHKQEYDRLENLFHQLRNPL 193
Query: 324 SSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQ 365
++++ K+L + E S+ +V++I+ +G+ L +QE +
Sbjct: 194 TALKIFGKLLLKRLVSDEQSFAVVKNIVREGEHLEDLIQEFE 235
>gi|452820149|gb|EME27195.1| two-component sensor histidine kinase [Galdieria sulphuraria]
Length = 505
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 113/263 (42%), Gaps = 47/263 (17%)
Query: 273 FSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNA---RMSNLVEQIRGPLSSIQTL 329
++ ++ L + +++A+A ++ + + ++ Q + SNL+ Q + PL +I+T
Sbjct: 196 WTREEELQILQSAKTVAIACTLNLRWQMSSTTTVQLSKIQKLFSNLLHQAQSPLMAIKTF 255
Query: 330 SKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNS 389
+K+L + +I+ ++V++I+ Q DRL+ L LQ MN
Sbjct: 256 AKLLLKRLPSEDINKELVQNILFQADRLQELLSPLQH-------------------MNER 296
Query: 390 AYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRP 449
SH +S +S P+ L+ + E L+ K +
Sbjct: 297 LLSHIKS----------------DTISSSIPIQLEASKESREAE----NLSSQKSISLHL 336
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLL--VAVEEPALRQALSNLIEGALMRT 507
C + DV+ + +VR A +++ + S + + V+E LR+ + N+ E A+ T
Sbjct: 337 CWLKDVIQPVLSSVRCFA--REKGIRFSSKIERDMPPCLVDERMLREVVLNICENAIKFT 394
Query: 508 QVGGKVEIVSAAAPAGDALVVID 530
GG + V + ++ V ID
Sbjct: 395 PTGGVIR-VDCYWDSKNSCVSID 416
>gi|88703723|ref|ZP_01101439.1| Heavy metal sensor kinase [Congregibacter litoralis KT71]
gi|88702437|gb|EAQ99540.1| Heavy metal sensor kinase [Congregibacter litoralis KT71]
Length = 467
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +++ + +LF+ LA +++Q+EL ++ ++ + LR+ALSNL+ AL T
Sbjct: 302 PLDLAREVRELFDFFEALA--EEKQIELVSEGKTPIIQGDRAMLRRALSNLLSNALRHTS 359
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM 536
GG+V + A + G AL+ + + GP +
Sbjct: 360 EGGRVLVGLALSGEGGALLSVQNPGPKI 387
>gi|299065500|emb|CBJ36669.1| Sensor protein, histidine kinase [Ralstonia solanacearum CMR15]
Length = 500
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 437 LALAPLKQNGIRPCNVSDVLGDLFEAV----RPLAHMQQRQVEL--SELSQSLLVAVEEP 490
LALA G P + LG+L +V PLA +Q+ + S L+ +L V+
Sbjct: 304 LALARAHHAGQDPPPETFDLGELARSVVVDALPLAREKQQDLGWDDSGLAAALPVSGYPA 363
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMH 537
LR+ALSNL+ A+ T +GG++ V A A + ALV +DD GP M+
Sbjct: 364 FLREALSNLVHNAIRYTPLGGRI-TVRAIADSDAALVCVDDTGPGMN 409
>gi|427735327|ref|YP_007054871.1| histidine kinase [Rivularia sp. PCC 7116]
gi|427370368|gb|AFY54324.1| histidine kinase [Rivularia sp. PCC 7116]
Length = 459
Score = 45.4 bits (106), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 439 LAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELS-QSLLVAVEEPALRQALS 497
L P KQ PC + ++ DL E LA+ Q+E S LS Q L V +E L + LS
Sbjct: 296 LIPTKQ----PCCLDILIEDLIEEFSALANASSLQLEYSILSHQPLYVMGDEDQLLRLLS 351
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
NLI A+ T GG + ++ GDA++ + D G
Sbjct: 352 NLIANAIQYTPAGGNINLI-LKKNNGDAVIEVIDTG 386
>gi|224000551|ref|XP_002289948.1| hypothetical protein THAPSDRAFT_262298 [Thalassiosira pseudonana
CCMP1335]
gi|220975156|gb|EED93485.1| hypothetical protein THAPSDRAFT_262298 [Thalassiosira pseudonana
CCMP1335]
Length = 286
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 46/87 (52%)
Query: 271 YKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLS 330
+K++ + +L +SLA+A MD + Q S Q ++ + Q++ PL +++T
Sbjct: 4 WKWTRNDKLQVSRAAKSLALALSMDTERASTQIQSEQFRMAFADSLHQVKSPLQALRTFG 63
Query: 331 KMLSLHMKRSEISYDIVEDIMVQGDRL 357
K+L + + + ED++ QG+R+
Sbjct: 64 KLLQRQLAEENSALKLAEDMVKQGERV 90
>gi|421895818|ref|ZP_16326217.1| transmembrane sensor kinase protein [Ralstonia solanacearum MolK2]
gi|206586983|emb|CAQ17567.1| transmembrane sensor kinase protein [Ralstonia solanacearum MolK2]
Length = 503
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 437 LALAPLKQNGIRPCNVSDVLGDLFEAV----RPLAHMQQRQVELSELSQSLLVAVEE-PA 491
LALA + G + LG+L +V PLA +Q+ + + L+ V PA
Sbjct: 307 LALARARHTGEDAPPETFDLGELARSVVVDALPLAREKQQDLGWDDSGLDTLLPVSGYPA 366
Query: 492 -LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
LR+ALSNL+ A+ T GG++ V A A G ALV +DD GP M
Sbjct: 367 FLREALSNLVHNAIRYTPPGGRI-TVRAIADGGAALVCVDDTGPGM 411
>gi|119510142|ref|ZP_01629281.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414]
gi|119465203|gb|EAW46101.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414]
Length = 466
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 109/260 (41%), Gaps = 50/260 (19%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLSSIQTLSKMLSL 335
I ++LA+A ++DQ+ LQ Q + NL+ Q R PL++I+T K+L
Sbjct: 151 KIAQTLAIACILDQRRAWLQHQLHQQQILQEQQRDLLDNLLHQFRNPLTAIRTFGKLLLK 210
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
++ + + D+ +I+ + DRL LQ+ + T+A+ + S PE
Sbjct: 211 RLRAGDPNRDVGANIVRESDRLEELLQQFDQVIDWTEADF-------------APKSLPE 257
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
+ RE P P L L P + C V D+
Sbjct: 258 H-EVFVEATVQRE------------------------PKPAL-LLPGTGDKETDCFVVDL 291
Query: 456 LGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKV 513
L L + + +A Q+R ++L +E+ +L + AL++ SN+I+ AL T GGK+
Sbjct: 292 LTPLLVSAQAIA--QERHLQLKTEIPGNLPPIYANVKALQEVFSNIIDNALKYTPPGGKI 349
Query: 514 EIVSAAAPAGDALVVIDDDG 533
I A + I + G
Sbjct: 350 LIQVGQEKANFQGIAISNTG 369
>gi|83747532|ref|ZP_00944570.1| Two component system histidine kinase [Ralstonia solanacearum
UW551]
gi|207744493|ref|YP_002260885.1| transmembrane sensor kinase protein [Ralstonia solanacearum
IPO1609]
gi|83725846|gb|EAP72986.1| Two component system histidine kinase [Ralstonia solanacearum
UW551]
gi|206595899|emb|CAQ62826.1| transmembrane sensor kinase protein [Ralstonia solanacearum
IPO1609]
Length = 503
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 437 LALAPLKQNGIRPCNVSDVLGDLFEAV----RPLAHMQQRQVELSELSQSLLVAVEE-PA 491
LALA + G + LG+L +V PLA +Q+ + + L+ V PA
Sbjct: 307 LALARARHTGEDAPPETFDLGELARSVVVDALPLAREKQQDLGWDDSGLDTLLPVSGYPA 366
Query: 492 -LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
LR+ALSNL+ A+ T GG++ V A A G ALV +DD GP M
Sbjct: 367 FLREALSNLVHNAIRYTPPGGRI-TVRAIADGGAALVCVDDTGPGM 411
>gi|427417191|ref|ZP_18907374.1| histidine kinase [Leptolyngbya sp. PCC 7375]
gi|425759904|gb|EKV00757.1| histidine kinase [Leptolyngbya sp. PCC 7375]
Length = 437
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 106/277 (38%), Gaps = 52/277 (18%)
Query: 269 RVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQS-------SWQNNARMSNLVEQIRG 321
R ++ S Q L ++ SLA +D+++ L+Q + + NL+ Q R
Sbjct: 117 RPWQASEQQYLQTVST--SLAAGCFLDRQNQWLRQRLKTKQALQGEQSDVFHNLLHQFRN 174
Query: 322 PLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEE 381
PL++I T K++ + + + +Y + + I+ + RL+ + + AV + A+I
Sbjct: 175 PLTAIGTFGKLMLRRLTQDDPNYRLADGIVRESQRLKELVTDFDAAVDIGDADIA----- 229
Query: 382 TLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAP 441
Q PL P +I+ PL A
Sbjct: 230 ---------------------------------QEVTPPL---LPPDNIDTSQKPLLPAL 253
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQ--SLLVAVEEPALRQALSNL 499
+ I P + DV+ L A + RQ S L LV V+ AL++ ++NL
Sbjct: 254 GRSLEITPQRLEDVIHPLIMVTVAAASERNRQFWHSPLDGFPQTLVGVDAQALQEVIANL 313
Query: 500 IEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
++ A V ++ +VI D+GP +
Sbjct: 314 LDNAFKYAPHQEWVWLLGGLTKENYVGIVIGDNGPGI 350
>gi|427709740|ref|YP_007052117.1| histidine kinase [Nostoc sp. PCC 7107]
gi|427362245|gb|AFY44967.1| histidine kinase [Nostoc sp. PCC 7107]
Length = 449
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 119/263 (45%), Gaps = 50/263 (19%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLSSIQTLSKMLSL 335
I ++LA+A V+DQ+ LQQ Q + NL+ Q R PL++++T K+L
Sbjct: 157 KIVQTLAIACVLDQRRAWLQQQLHQQQVLQEQQRDLLDNLLHQFRNPLTALRTFGKLLFK 216
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
++ + + D+ +I+ + DRL+ LQ+ + ++ + E ++ + + PE
Sbjct: 217 RLRPGDPNRDVGANIVRESDRLQELLQQFE--------QVIDWTE-----LDVAPLALPE 263
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
N E + ++ P+ L P + C ++D+
Sbjct: 264 -------NEVFVEAT-------------------VQTEPKPILLLPGTGEKVTDCYLADL 297
Query: 456 LGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKV 513
L L + + +A Q+R ++L +E+ ++L LV AL++ LSN+I+ AL T GGK+
Sbjct: 298 LAPLLLSAKAIA--QERHLKLKTEIPKNLPLVRANIKALQEVLSNIIDNALKYTPKGGKI 355
Query: 514 EIVSAAAPAGDALVVIDDDGPDM 536
I + I D GP +
Sbjct: 356 FIQVGQERGNCIGIAISDTGPGI 378
>gi|187930280|ref|YP_001900767.1| integral membrane sensor signal transduction histidine kinase
[Ralstonia pickettii 12J]
gi|187727170|gb|ACD28335.1| integral membrane sensor signal transduction histidine kinase
[Ralstonia pickettii 12J]
Length = 509
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 79/175 (45%), Gaps = 33/175 (18%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R LS +R S N+L L+
Sbjct: 269 AVLLTQA------EYALRETD------PVRVRESLSAIIARLQSTNRLTTQLLALARARH 316
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVA 486
A + P L L + DV+ D PLA +++Q +L L++A
Sbjct: 317 AGQ-DAPAETFDLGVLAR---------DVVVDAL----PLA--REKQQDLGWDDGGLVMA 360
Query: 487 ---VEEPA-LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMH 537
+ PA LR+ALSNL+ A+ T GG++ V A A ALV +DD GP M+
Sbjct: 361 LPVIGYPAFLREALSNLVHNAIRYTPAGGRI-TVRATADGDAALVCVDDTGPGMN 414
>gi|398336909|ref|ZP_10521614.1| chemotaxis protein histidine kinase [Leptospira kmetyi serovar
Malaysia str. Bejo-Iso9]
Length = 726
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 18/98 (18%)
Query: 456 LGDLFE----AVRPLAHMQQRQVEL------SELSQSLLVAVEEPA---LRQALSNLIEG 502
+ DLFE VR L+ +QVEL +EL +S++ + +P LR AL + IE
Sbjct: 399 IADLFEKYKRVVRDLSKELNKQVELEIIGGETELDRSVIEKIADPIVHILRNALDHGIET 458
Query: 503 ALMRTQVG----GKVEIVSAAAPAGDALVVIDDDGPDM 536
A R Q G GK++I A+ G L+VI DDG +
Sbjct: 459 AEERIQKGKPATGKLQI-QASHGTGSILIVIQDDGKGL 495
>gi|334341286|ref|YP_004546266.1| ATP-binding protein [Desulfotomaculum ruminis DSM 2154]
gi|334092640|gb|AEG60980.1| ATP-binding region ATPase domain protein [Desulfotomaculum ruminis
DSM 2154]
Length = 1033
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 22/173 (12%)
Query: 377 RYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPP 436
R+ +E L K ++ + + + + + + SG+ LSL K+I +
Sbjct: 431 RFKDEFLAKTSHEFRTPLHGVMTLVQSMLTSPASGSLTPEQTNKLSL---VKEISKRLAF 487
Query: 437 LA-----LAPLKQN--GIRPCNV-----SDVLGDLFEAVRPLAHMQQRQVELSELSQSL- 483
L L+ LKQ IRP NV S ++ ++F V P HM R +++S +
Sbjct: 488 LVEDIADLSKLKQGQLKIRPQNVDLHTISHLVTEVFAHVLP-GHMTLR----NQVSPHIP 542
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
V +E LRQ L+NLI+ A GG++E+ SA AG +V + D GP +
Sbjct: 543 YVRADENRLRQILNNLIDNAAKHAGAGGEIEL-SAQEQAGFVVVSVKDAGPGI 594
>gi|116073055|ref|ZP_01470317.1| two-component sensor histidine kinase, phosphate sensing
[Synechococcus sp. RS9916]
gi|116068360|gb|EAU74112.1| two-component sensor histidine kinase, phosphate sensing
[Synechococcus sp. RS9916]
Length = 382
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 9/105 (8%)
Query: 441 PLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNL 499
P+ + P +S+++G + +VRPLA +QR + L+ + + L+ ++P L +A+ NL
Sbjct: 221 PIDSSAYSPLVLSELVGSAWSSVRPLA--EQRNISLTIQGEATALLRGDQPKLHRAILNL 278
Query: 500 IEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG-----PDMHYM 539
++ AL + GG+VE V G L+ + D G PD+ M
Sbjct: 279 LDNALRYSPEGGQVE-VDIQPSGGWWLLAVRDHGQGLSEPDLEQM 322
>gi|289524121|ref|ZP_06440975.1| putative sensor histidine kinase [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
gi|289502777|gb|EFD23941.1| putative sensor histidine kinase [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
Length = 459
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 73/134 (54%), Gaps = 6/134 (4%)
Query: 403 NNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEA 462
+N S N L+ + + L ++ KD+ + +L L ++P +++++L L E
Sbjct: 262 DNLSPSIRDNLLRLNNQVLRMERLVKDL---LDMSSLETLSGLDLKPVHLTELLSALIED 318
Query: 463 VRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPA 522
+ L+ + +E++ LS++L V +E LR+A SNL++ A+ + GG++ I + A
Sbjct: 319 YQLLSDARSIMMEVN-LSENLWVKGDEEKLRRAFSNLLDNAIKYNEDGGQIVIRAKREVA 377
Query: 523 GDA--LVVIDDDGP 534
A +V+I++ GP
Sbjct: 378 ETAVIVVIIENTGP 391
>gi|443312527|ref|ZP_21042144.1| signal transduction histidine kinase [Synechocystis sp. PCC 7509]
gi|442777505|gb|ELR87781.1| signal transduction histidine kinase [Synechocystis sp. PCC 7509]
Length = 417
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 21/154 (13%)
Query: 394 PESIRSQLSNNFSRENSGNKLQNSCKPL--SLDTPAKDIEMPMPPLALAP---------- 441
P+ +++N RE+ ++LQ K ++D D+E ALAP
Sbjct: 204 PDDANRAVADNIVRES--DRLQELLKQFDRAIDLTVDDLEAQK---ALAPALTKVKSLPL 258
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIE 501
L + C V++VL L E+ R +A + ++E + V +E ALR+ LSN+I+
Sbjct: 259 LTAANSQLCVVANVLAPLVESARAIALERNLRLEADIPMNAPAVKADEGALRELLSNVID 318
Query: 502 GALMRTQVGGKVEIVSAAAPAGDAL--VVIDDDG 533
AL T GG++ I S GD+L + I D G
Sbjct: 319 NALKYTPKGGQINIQSGI--WGDSLQGIAISDTG 350
>gi|67923216|ref|ZP_00516703.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
[Crocosphaera watsonii WH 8501]
gi|67854947|gb|EAM50219.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
[Crocosphaera watsonii WH 8501]
Length = 429
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 64/122 (52%), Gaps = 9/122 (7%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQ-------NNARMSNLVEQIRGPLSSIQTLSKMLSLH 336
I +LA+A ++DQ+ ++ + R+ +L Q+R PL++++ K+L
Sbjct: 145 IADTLAIACLLDQRGEWYERQLQRQQLKQQQERDRLDDLFHQVRNPLTALKVFGKLLLKR 204
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQ--DAVFLTKANIVRYNEETLKKMNNSAYSHP 394
+ E S IV++I+ +G+ L+ +++ + + + + ++ N E++ +N ++S P
Sbjct: 205 LGGDEQSSSIVKNIVQEGEHLQDLIKDFESYENSLINEEEVITLNTESVDISDNLSFSLP 264
Query: 395 ES 396
S
Sbjct: 265 AS 266
>gi|254419144|ref|ZP_05032868.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Brevundimonas sp. BAL3]
gi|196185321|gb|EDX80297.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Brevundimonas sp. BAL3]
Length = 473
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 437 LALAPLKQNGI---RPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPAL 492
LA+A L+ G +P + ++ D+ E P A + + ++ S E+ L++ +P L
Sbjct: 301 LAIARLQAGGAPDPKPMDAGELAADMAELYEPAA--EDKSIDFSSEVETGLMIEGNQPFL 358
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
QAL+NLI+ A+ T GG V++ + +G+ + D GP +
Sbjct: 359 AQALANLIDNAIKYTPAGGAVKLRARRRSSGEIEYSVTDTGPGV 402
>gi|311109657|ref|YP_003982510.1| His Kinase A phosphoacceptor domain-containing protein 14
[Achromobacter xylosoxidans A8]
gi|310764346|gb|ADP19795.1| His Kinase A phosphoacceptor domain protein 14 [Achromobacter
xylosoxidans A8]
Length = 495
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 440 APLKQNGI--RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALS 497
A L + G P ++ D+ + + P A +Q + L + + V E LR+A+S
Sbjct: 322 ASLAEGGFTPEPVDLVDLADGVIRGLLPTARARQLDIGLEADIRPVTVLGAEWLLREAVS 381
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
NL++ A+ T G+V V AG A +V++D+GP M
Sbjct: 382 NLVDNAIRYTSSAGEV-TVKVQVEAGQARLVVEDNGPGM 419
>gi|430808189|ref|ZP_19435304.1| sensory histidine kinase [Cupriavidus sp. HMR-1]
gi|429499475|gb|EKZ97898.1| sensory histidine kinase [Cupriavidus sp. HMR-1]
Length = 462
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 457 GDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIV 516
G LFE LA + +QV L L +V + LR+ALSNL+ AL T G V +V
Sbjct: 320 GALFEFYEALA--EDKQVAL-RLQGDGIVEGDRLMLRRALSNLLSNALRHTPQAGAV-VV 375
Query: 517 SAAAPAGDALVVIDDDGPDM 536
A A G +V +++DGP++
Sbjct: 376 EAHAEGGSVVVAVENDGPEI 395
>gi|421890533|ref|ZP_16321391.1| Sensor protein, histidine kinase [Ralstonia solanacearum K60-1]
gi|378964143|emb|CCF98139.1| Sensor protein, histidine kinase [Ralstonia solanacearum K60-1]
Length = 503
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 76/176 (43%), Gaps = 37/176 (21%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R L+ +R S N+L +
Sbjct: 267 AVLLTQA------EYALRETD------PARVRESLAAIIARLQSTNRLTSQL-------- 306
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAV----RPLAHMQQRQVEL--SELS 480
LALA + G + LG+L +V PLA +Q+ + S L
Sbjct: 307 ----------LALARARHTGQDAPPETFDLGELARSVVVDALPLAREKQQDLGWDDSGLD 356
Query: 481 QSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
L V+ LR+ALSNL+ A+ T G++ V A A G ALV +DD GP M
Sbjct: 357 TQLPVSGYPAFLREALSNLVHNAIRYTPPSGRI-TVRAIADCGAALVCVDDTGPGM 411
>gi|359421005|ref|ZP_09212935.1| hypothetical protein GOARA_064_00060 [Gordonia araii NBRC 100433]
gi|358242870|dbj|GAB11004.1| hypothetical protein GOARA_064_00060 [Gordonia araii NBRC 100433]
Length = 161
Score = 43.1 bits (100), Expect = 0.37, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID-DD 532
VEL L+QS+L AVEE A L + + R VGG +E+V A G +V D
Sbjct: 78 VELLGLAQSVLTAVEEQA--PELPATVGVVIRRASVGGDIEVVDVAVDGGSGVVAEDVAA 135
Query: 533 GPDMHYMVIIANFAAYSPPHPT 554
G D+ + A A PPHPT
Sbjct: 136 GGDLRIGKVAAR-APQEPPHPT 156
>gi|380512771|ref|ZP_09856178.1| sensory histidine kinase CreC [Xanthomonas sacchari NCPPB 4393]
Length = 480
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 437 LALAPLKQNGI----RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL 492
LALA ++Q+G P ++ + DL EA+ P + Q+++ L +L+V+ + L
Sbjct: 315 LALAEVEQHGWLQRREPVALAPLCADLVEALAPQLQARGLQLQVQALDPTLVVSGDPYLL 374
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
RQAL NL++ A+ + G + + + L+V++D GP +
Sbjct: 375 RQALHNLLDNAIAFSPEGASIVLRAERGTDARVLLVVEDAGPGV 418
>gi|119962088|ref|YP_948935.1| two-component sensor histidine kinase [Arthrobacter aurescens TC1]
gi|403528408|ref|YP_006663295.1| sensor histidine kinase ResE [Arthrobacter sp. Rue61a]
gi|119948947|gb|ABM07858.1| putative two-component sensor histidine kinase domains protein
[Arthrobacter aurescens TC1]
gi|403230835|gb|AFR30257.1| sensor histidine kinase ResE [Arthrobacter sp. Rue61a]
Length = 547
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
++P ++ +L + +RPLA + V +E ++ + V +E L Q +N++ A+
Sbjct: 389 LKPVDIDKLLQVVVATLRPLAESRHVSVSFTEATEDIEVTADEAKLEQVFTNIVANAIKF 448
Query: 507 TQVGGKVEIVSAAAPAGD----ALVVIDDDG 533
T GG V I SA + + ALV I D+G
Sbjct: 449 TPEGGSVGITSAMSATENGRLSALVRIADNG 479
>gi|428206544|ref|YP_007090897.1| histidine kinase [Chroococcidiopsis thermalis PCC 7203]
gi|428008465|gb|AFY87028.1| histidine kinase [Chroococcidiopsis thermalis PCC 7203]
Length = 448
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 95/229 (41%), Gaps = 52/229 (22%)
Query: 312 MSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLT 371
+ NL+ Q R PL++++T K+L + + + + ++I+ + DRL+ LQ+ + +T
Sbjct: 189 LDNLLHQFRNPLTALRTFGKLLLKRLLPGDANRAVADNIVRESDRLQELLQQFDRVIDMT 248
Query: 372 KANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIE 431
+ ++ +P PA ++
Sbjct: 249 EEDL-------------------------------------------EPTKSLPPATEVR 265
Query: 432 MPMP----PLALAPLKQNGIRP-CNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSL-L 484
+P PL L P ++ C + DVL L + +A Q+R +EL ++L +L
Sbjct: 266 SAIPILNTPLPLLPNREGTQSEICTIEDVLKPLLASAWAIA--QERNLELQADLPPNLPA 323
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
V LR+ LSNL++ A+ T GGK+ + + + I D G
Sbjct: 324 VRAHLRELREVLSNLLDNAIKYTPPGGKIYVQAGLERDNFQGIAISDTG 372
>gi|223935939|ref|ZP_03627854.1| integral membrane sensor signal transduction histidine kinase
[bacterium Ellin514]
gi|223895540|gb|EEF61986.1| integral membrane sensor signal transduction histidine kinase
[bacterium Ellin514]
Length = 355
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 438 ALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALS 497
L LK+ +R +SD++ D +E + LA + Q+EL ++L++ + LRQ L
Sbjct: 197 GLITLKREKVR---LSDLVKDCYEDAQILAQSTKVQIELKSCDEALVLG-DRHRLRQLLL 252
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
NL + A+ Q G V I A AG+A + I + GP +
Sbjct: 253 NLTDNAIKYNQENGSVAI-ELRAEAGEARLKISNTGPGI 290
>gi|392966617|ref|ZP_10332036.1| PAS/PAC sensor hybrid histidine kinase [Fibrisoma limi BUZ 3]
gi|387845681|emb|CCH54082.1| PAS/PAC sensor hybrid histidine kinase [Fibrisoma limi BUZ 3]
Length = 951
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+P ++ ++ E +PL QQRQ+ L+ SL++ +E L+Q L NL+ L T
Sbjct: 650 QPIDLVTLVRQTVEVAQPLYEQQQRQLSLALPPYSLVMQGDETRLKQVLMNLLTNGLKYT 709
Query: 508 QVGGKV----EIVSAAAPAGDALVVIDDDG 533
Q G V E+ +A + AL+ + DDG
Sbjct: 710 QPAGHVWVSLELADNSALSKQALLRMKDDG 739
>gi|392426651|ref|YP_006467645.1| signal transduction histidine kinase [Desulfosporosinus acidiphilus
SJ4]
gi|391356614|gb|AFM42313.1| signal transduction histidine kinase [Desulfosporosinus acidiphilus
SJ4]
Length = 591
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 437 LALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQAL 496
L+LA + + N++D++ +L+ ++ A ++V L+ L+++ + ++ ++Q +
Sbjct: 436 LSLAKVNVEHAKYQNINDIVYNLYPLMQADAFNNNKEVRLN-LNETENILLDTNEIKQLI 494
Query: 497 SNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
N++ L T GG V I + PA L VI DDGP +
Sbjct: 495 LNIVRNGLEATHTGGSVTISTLQEPAKVVL-VIRDDGPGI 533
>gi|239813727|ref|YP_002942637.1| PAS/PAC sensor hybrid histidine kinase [Variovorax paradoxus S110]
gi|239800304|gb|ACS17371.1| PAS/PAC sensor hybrid histidine kinase [Variovorax paradoxus S110]
Length = 641
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+P + D + + EAVRPL + + + L +A + + Q +SNL+ A T
Sbjct: 348 KPVRLRDAIAEAIEAVRPLIDGKSQTLHLQTQDADPWIAGDSARVVQIVSNLVHNAAKFT 407
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
GG + VS + A DA + + DDGP +
Sbjct: 408 GNGGNIH-VSLSRTAADADISVRDDGPGI 435
>gi|409406143|ref|ZP_11254605.1| sensor kinase of copper sensing two-component system
[Herbaspirillum sp. GW103]
gi|386434692|gb|EIJ47517.1| sensor kinase of copper sensing two-component system
[Herbaspirillum sp. GW103]
Length = 459
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 444 QNGI-----RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSN 498
+NGI P + + + +LF+ LA + Q++L+ + + +R+ALSN
Sbjct: 301 ENGISLPSYEPLQLQEEITELFDFYDALAEEKGLQLQLA---GDATIRGDRLMVRRALSN 357
Query: 499 LIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
LI A+ T G + VS A GD LV +++DGP++
Sbjct: 358 LISNAMRYTPAAGSI-TVSIARSEGDVLVAVENDGPEI 394
>gi|270308800|ref|YP_003330858.1| sensory box sensor histidine kinase [Dehalococcoides sp. VS]
gi|270154692|gb|ACZ62530.1| sensory box sensor histidine kinase [Dehalococcoides sp. VS]
Length = 392
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMRT 507
P N+ ++L D+ E +RP+ +++ +S L SL +V + L+Q + NL++ A T
Sbjct: 241 PLNIYELLKDVEEIIRPVFESNAQKLTIS-LQNSLPVVVADYKRLKQVILNLLDNATKYT 299
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYS 549
+GG + + SAAA ++ + D+G M A F YS
Sbjct: 300 PLGGDIRL-SAAASNKYLVIEVKDNGKGMSPKETGALFKLYS 340
>gi|150399364|ref|YP_001323131.1| integral membrane sensor signal transduction histidine kinase
[Methanococcus vannielii SB]
gi|150012067|gb|ABR54519.1| integral membrane sensor signal transduction histidine kinase
[Methanococcus vannielii SB]
Length = 641
Score = 42.7 bits (99), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
NV D + D+ E + PLA ++ ++L + + LL+ ++ + Q +NLIE A+ +
Sbjct: 487 NVKDTVSDVIEYLTPLA--TEKNIKLKQDIKDLLINADKDRITQVFTNLIENAIKFSPAN 544
Query: 511 GKVEIVSAAAPAGDALVVIDDDGP 534
+ I+ GD + + D+G
Sbjct: 545 ESIMIIGKETENGDVHITVKDNGA 568
>gi|428221709|ref|YP_007105879.1| histidine kinase [Synechococcus sp. PCC 7502]
gi|427995049|gb|AFY73744.1| histidine kinase [Synechococcus sp. PCC 7502]
Length = 425
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
Query: 440 APLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNL 499
PLK N C++S +L ++ E + +A Q +E+ + V + L + +NL
Sbjct: 267 TPLKVNDQNHCDLSQILSNVVEEQQIIAQNQNITIEVLSADVPVTVLGDRSQLVRLFTNL 326
Query: 500 IEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG---PDMHYMVIIANFAAYSP 550
I A+ T GGKV + A + A + I D G P+ I F Y P
Sbjct: 327 ISNAINYTLAGGKVTVSLATINSHQAQIEITDTGMGIPNEAIAQIFERFWRYQP 380
>gi|33594717|ref|NP_882361.1| sensor kinase [Bordetella pertussis Tohama I]
gi|33598903|ref|NP_886546.1| sensor kinase [Bordetella parapertussis 12822]
gi|384206014|ref|YP_005591753.1| putative sensor kinase protein [Bordetella pertussis CS]
gi|33564793|emb|CAE44121.1| putative sensor kinase protein [Bordetella pertussis Tohama I]
gi|33575033|emb|CAE39699.1| putative sensor kinase protein [Bordetella parapertussis]
gi|332384128|gb|AEE68975.1| putative sensor kinase protein [Bordetella pertussis CS]
Length = 487
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 440 APLKQNGI--RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALS 497
A L + G+ +++++ + A+ P A +Q + L + + V E LR+ALS
Sbjct: 314 ASLAEGGLPLETVDLAELADGVIRALLPAARARQLDLGLDVQAAPVRVQAVEWLLREALS 373
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
NL++ A+ T G +V V A G A +V++D+GP M
Sbjct: 374 NLVDNAIRYTARGSEV-TVKVHAEGGHAWLVVEDNGPGM 411
>gi|416396164|ref|ZP_11686411.1| two-component sensor histidine kinase [Crocosphaera watsonii WH
0003]
gi|357263014|gb|EHJ12077.1| two-component sensor histidine kinase [Crocosphaera watsonii WH
0003]
Length = 429
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 63/122 (51%), Gaps = 9/122 (7%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQ-------NNARMSNLVEQIRGPLSSIQTLSKMLSLH 336
I +LA+A ++DQ+ ++ + R+ +L Q+R PL++++ K+L
Sbjct: 145 IADTLAIACLLDQRGEWYERQLQRQQLKQQQERDRLDDLFHQVRNPLTALKVFGKLLLKR 204
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDA--VFLTKANIVRYNEETLKKMNNSAYSHP 394
+ E S IV++I+ +G+ L+ +++ + + + ++ N E++ +N ++S P
Sbjct: 205 LGGDEQSSSIVKNIVQEGEHLQDLIKDFESYQNSLINEEEVITLNTESVDISDNLSFSLP 264
Query: 395 ES 396
S
Sbjct: 265 AS 266
>gi|332880410|ref|ZP_08448084.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Capnocytophaga sp. oral taxon 329 str. F0087]
gi|357046222|ref|ZP_09107852.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paraprevotella clara YIT 11840]
gi|332681398|gb|EGJ54321.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Capnocytophaga sp. oral taxon 329 str. F0087]
gi|355531228|gb|EHH00631.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paraprevotella clara YIT 11840]
Length = 1299
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 428 KDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAV 487
+ IEM LAL N+ D+L ++E+ P++ + + + ++ LV
Sbjct: 855 RRIEMKGETLALETF--------NLKDMLSRIYESFLPMSEEKNIRFDFHCHPETFLVTA 906
Query: 488 EEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGD---ALVVIDDDG 533
+ P + + ++NL+ A T GG V + + P+ A++ ++DDG
Sbjct: 907 DSPKIEKVVNNLLSNAFKFTPQGGHVTLKAYPEPSDGREMAVIQVEDDG 955
>gi|410474979|ref|YP_006898260.1| sensor kinase protein [Bordetella parapertussis Bpp5]
gi|408445089|emb|CCJ51886.1| putative sensor kinase protein [Bordetella parapertussis Bpp5]
Length = 471
Score = 42.4 bits (98), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 440 APLKQNGI--RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALS 497
A L + G+ +++++ + A+ P A +Q + L + + V E LR+ALS
Sbjct: 298 ASLAEGGLPLETVDLAELADGVIRALLPAARARQLDLGLDVQAAPVRVQAVEWLLREALS 357
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
NL++ A+ T G +V V A G A +V++D+GP M
Sbjct: 358 NLVDNAIRYTARGSEV-TVKVHAEGGHAWLVVEDNGPGM 395
>gi|408417454|ref|YP_006628161.1| sensor kinase protein [Bordetella pertussis 18323]
gi|401779624|emb|CCJ65166.1| putative sensor kinase protein [Bordetella pertussis 18323]
Length = 487
Score = 42.4 bits (98), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 440 APLKQNGI--RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALS 497
A L + G+ +++++ + A+ P A +Q + L + + V E LR+ALS
Sbjct: 314 ASLAEGGLPLETVDLAELADGVIRALLPAARARQLDLGLDVQAAPVRVQAVEWLLREALS 373
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
NL++ A+ T G +V V A G A +V++D+GP M
Sbjct: 374 NLVDNAIRYTARGSEV-TVKVHAEGGHAWLVVEDNGPGM 411
>gi|344172647|emb|CCA85301.1| sensor protein, histidine kinase [Ralstonia syzygii R24]
Length = 503
Score = 42.4 bits (98), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 76/172 (44%), Gaps = 29/172 (16%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R L+ +R S N+L + L+
Sbjct: 267 AVLLTQA------EYALRETD------PVRVREGLAAMIARLQSTNRLTSQLLALAR--- 311
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL--SELSQSLL 484
A+ PP + V D L PLA +Q+ + S L+ +L
Sbjct: 312 ARHAGQDAPP---ETFDLGALARSVVVDAL--------PLAREKQQDLGWDDSGLATTLP 360
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
V+ LR+ALSNL+ A+ T GG++ V A A + ALV +DD GP M
Sbjct: 361 VSGYPAFLREALSNLVHNAIRYTPPGGRI-TVRAVADSDAALVCVDDTGPGM 411
>gi|114561671|ref|YP_749184.1| periplasmic sensor signal transduction histidine kinase [Shewanella
frigidimarina NCIMB 400]
gi|114332964|gb|ABI70346.1| periplasmic sensor signal transduction histidine kinase [Shewanella
frigidimarina NCIMB 400]
Length = 485
Score = 42.4 bits (98), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
++ N+S++L D+ + P A Q++ +++ + + + +R+ L+NL++ AL
Sbjct: 333 LQQVNLSELLSDIEQTFTPRAKKLGVQLDF-DINHASQIYTDPALMRRILNNLVDNALRY 391
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMH 537
T GGK++IV+A G + + D G MH
Sbjct: 392 TPAGGKIQIVNAQHN-GQQWLTVRDTGAGMH 421
>gi|33603982|ref|NP_891542.1| sensor kinase [Bordetella bronchiseptica RB50]
gi|412340703|ref|YP_006969458.1| sensor kinase protein [Bordetella bronchiseptica 253]
gi|427816991|ref|ZP_18984055.1| putative sensor kinase protein [Bordetella bronchiseptica 1289]
gi|33568958|emb|CAE35372.1| putative sensor kinase protein [Bordetella bronchiseptica RB50]
gi|408770537|emb|CCJ55331.1| putative sensor kinase protein [Bordetella bronchiseptica 253]
gi|410567991|emb|CCN25564.1| putative sensor kinase protein [Bordetella bronchiseptica 1289]
Length = 471
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 440 APLKQNGI--RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALS 497
A L + G+ +++++ + A+ P A +Q + L + + V E LR+ALS
Sbjct: 298 ASLAEGGLPLETVDLAELADGVIRALLPAARARQLDLGLDVQAAPVRVQAVEWLLREALS 357
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
NL++ A+ T G +V V A G A +V++D+GP M
Sbjct: 358 NLVDNAIRYTARGSEV-TVKVHAEGGHAWLVVEDNGPGM 395
>gi|300690244|ref|YP_003751239.1| sensor protein, histidine kinase [Ralstonia solanacearum PSI07]
gi|299077304|emb|CBJ49930.1| Sensor protein, histidine kinase [Ralstonia solanacearum PSI07]
Length = 503
Score = 42.4 bits (98), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 76/172 (44%), Gaps = 29/172 (16%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R L+ +R S N+L + L+
Sbjct: 267 AVLLTQA------EYALRETD------PVRVREGLAAMIARLQSTNRLTSQLLALAR--- 311
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL--SELSQSLL 484
A+ PP + V D L PLA +Q+ + S L+ +L
Sbjct: 312 ARHAGQDAPP---ETFDLGALARSVVVDAL--------PLAREKQQDLGWDDSGLATTLP 360
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
V+ LR+ALSNL+ A+ T GG++ V A A + ALV +DD GP M
Sbjct: 361 VSGYPAFLREALSNLVHNAIRYTPPGGRI-TVRAVADSDAALVCVDDTGPGM 411
>gi|167648307|ref|YP_001685970.1| integral membrane sensor signal transduction histidine kinase
[Caulobacter sp. K31]
gi|167350737|gb|ABZ73472.1| integral membrane sensor signal transduction histidine kinase
[Caulobacter sp. K31]
Length = 450
Score = 42.4 bits (98), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 459 LFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSA 518
L E V A ++ELS + L + A ++AL+NLI+ A G V + S
Sbjct: 315 LIEGVCEGAQRAGARIELS-IGDDLSAILRPQAFKRALANLIDNAAAH---GETVRVSST 370
Query: 519 AAPAGDALVVIDDDGPDM 536
AAPAG + IDDDGP +
Sbjct: 371 AAPAGGVWIFIDDDGPGI 388
>gi|344169049|emb|CCA81372.1| sensor protein, histidine kinase [blood disease bacterium R229]
Length = 503
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 76/172 (44%), Gaps = 29/172 (16%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R L+ +R S N+L + L+
Sbjct: 267 AVLLTQA------EYALRETD------PVRVREGLAAMIARLQSTNRLTSQLLALAR--- 311
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL--SELSQSLL 484
A+ PP + V D L PLA +Q+ + S L+ +L
Sbjct: 312 ARHAGQDAPP---ETFDLGALARSVVVDAL--------PLAREKQQDLGWDDSGLATTLP 360
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
V+ LR+ALSNL+ A+ T GG++ V A A + ALV +DD GP M
Sbjct: 361 VSGYPAFLREALSNLVHNAIRYTPPGGRI-TVRAVADSDAALVCVDDTGPGM 411
>gi|384086221|ref|ZP_09997396.1| integral membrane sensor signal transduction histidine kinase
[Acidithiobacillus thiooxidans ATCC 19377]
Length = 501
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
VS++L DL + ++PL +Q Q L E L V + LRQ LSNL+ A +
Sbjct: 349 VKVSEILEDLLKRMQPLTEKKQ-QTLLCESHAPLEVYADPQRLRQILSNLVSNANKYSPA 407
Query: 510 GGKVEIVSAAAPAGDALVVIDDDGPDM 536
GG++ + + A G L I+D+GP +
Sbjct: 408 GGQIHVQAIAEQQG-VLFRIEDEGPGI 433
>gi|456735195|gb|EMF59956.1| Sensory histidine kinase BaeS [Stenotrophomonas maltophilia EPM1]
Length = 467
Score = 42.0 bits (97), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID 530
L V+ +E L+Q L+NL+E AL T+ GG+V + +A PAG LVV D
Sbjct: 351 LQVSGDERRLQQVLANLLENALRYTRAGGRVRVQAARVPAGVQLVVED 398
>gi|220932166|ref|YP_002509074.1| integral membrane sensor signal transduction histidine kinase
[Halothermothrix orenii H 168]
gi|219993476|gb|ACL70079.1| integral membrane sensor signal transduction histidine kinase
[Halothermothrix orenii H 168]
Length = 463
Score = 42.0 bits (97), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSEL---SQSLLVAVEEPALRQALSNLIEGALMRTQ 508
+++ L DL + P A +++Q++L + QS+ + E ALR NLI +L T
Sbjct: 313 LANFLEDLLNSYLPQA--REKQIDLIKKYNPEQSIFIDSNEDALRTIFGNLINNSLKYTP 370
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM 536
GGK+EI + ++ A++ + D+G +
Sbjct: 371 EGGKIEI-TLSSKKNQAIISVKDNGTGI 397
>gi|428303893|ref|YP_007140718.1| histidine kinase [Crinalium epipsammum PCC 9333]
gi|428245428|gb|AFZ11208.1| histidine kinase [Crinalium epipsammum PCC 9333]
Length = 466
Score = 42.0 bits (97), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLSSIQTLSKMLSLH 336
I ++L+++ ++DQ+ +Q Q + +L+ Q R PL++++T K+L
Sbjct: 158 IAQTLSLSCILDQRRAWFEQRLSQQQRLQAQQRNILDDLIHQFRNPLTALRTFGKLLLKR 217
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANI 375
+ + + ++ I+ + DRL+ LQ+ + LT+ N+
Sbjct: 218 LGSGDANREVANSIVRESDRLQEMLQQFDSCLDLTQVNL 256
>gi|5764627|gb|AAD51347.1|AF173226_4 SmeS [Stenotrophomonas maltophilia]
Length = 467
Score = 42.0 bits (97), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID 530
L V+ +E L+Q L+NL+E AL T GG+V + +A PAG LVV D
Sbjct: 351 LQVSGDERRLQQVLANLLENALRYTHAGGRVRVQAARVPAGVQLVVED 398
>gi|190576269|ref|YP_001974114.1| two-component system sensor histidine kinase [Stenotrophomonas
maltophilia K279a]
gi|190014191|emb|CAQ47835.1| putative two-component system sensor histidine kinase
[Stenotrophomonas maltophilia K279a]
Length = 467
Score = 42.0 bits (97), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID 530
L V+ +E L+Q L+NL+E AL T GG+V + +A PAG LVV D
Sbjct: 351 LQVSGDERRLQQVLANLLENALRYTHAGGRVRVQAARVPAGVQLVVED 398
>gi|43294863|gb|AAQ90164.2| putative kinase sensor [Xanthomonas campestris]
Length = 484
Score = 42.0 bits (97), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID 530
L V+ +E L+Q L+NL+E AL T GG+V + +A PAG L+V D
Sbjct: 368 LQVSGDERRLQQVLANLLENALRYTHTGGRVRVQAARVPAGVQLIVED 415
>gi|330995207|ref|ZP_08319120.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paraprevotella xylaniphila YIT 11841]
gi|329576349|gb|EGG57863.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paraprevotella xylaniphila YIT 11841]
Length = 1311
Score = 42.0 bits (97), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 428 KDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAV 487
+ IEM LAL N+ D+L ++E+ P++ + + + ++ L+
Sbjct: 867 RRIEMKGETLALETF--------NLKDMLSRIYESFLPMSEEKNIRFDFHCHPETFLITA 918
Query: 488 EEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGD---ALVVIDDDG 533
+ P + + ++NL+ A T GG V + + P+ A++ ++DDG
Sbjct: 919 DSPKIEKVVNNLLSNAFKFTPQGGHVTLKAYPEPSDGREMAVIQVEDDG 967
>gi|424670657|ref|ZP_18107680.1| hypothetical protein A1OC_04277 [Stenotrophomonas maltophilia
Ab55555]
gi|401070312|gb|EJP78828.1| hypothetical protein A1OC_04277 [Stenotrophomonas maltophilia
Ab55555]
Length = 467
Score = 42.0 bits (97), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID 530
L V+ +E L+Q L+NL+E AL T GG+V + +A PAG LVV D
Sbjct: 351 LQVSGDERRLQQVLANLLENALRYTHAGGRVRVQAARVPAGVQLVVED 398
>gi|182412192|ref|YP_001817258.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
gi|177839406|gb|ACB73658.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
Length = 695
Score = 42.0 bits (97), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG----PDMH 537
LLV +E +RQALSNL+ AL T GG V++ PAG V + D G P+ H
Sbjct: 441 LLVHADERLIRQALSNLLSNALKFTPAGGAVDLTVEPTPAGGVRVAVRDSGIGIAPEKH 499
>gi|392408182|ref|YP_006444790.1| signal transduction histidine kinase [Anaerobaculum mobile DSM
13181]
gi|390621318|gb|AFM22465.1| signal transduction histidine kinase [Anaerobaculum mobile DSM
13181]
Length = 456
Score = 42.0 bits (97), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 67/123 (54%), Gaps = 5/123 (4%)
Query: 412 NKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQ 471
N L+ + + L ++ KD+ + +L L ++P +++++L L E + L+ +
Sbjct: 271 NLLRLNHQVLRMERLVKDL---LDMSSLETLSGLDLKPVHLTELLSALIEDYQLLSDARS 327
Query: 472 RQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDD 531
+E++ L ++L V +E LR+A SNL++ A+ + GG++ I A + +V+I +
Sbjct: 328 ITMEVN-LPENLWVKGDEEKLRRAFSNLLDNAIKYNEDGGQIAI-RAEREVAETVVIIKN 385
Query: 532 DGP 534
GP
Sbjct: 386 TGP 388
>gi|269836214|ref|YP_003318442.1| histidine kinase [Sphaerobacter thermophilus DSM 20745]
gi|269785477|gb|ACZ37620.1| histidine kinase [Sphaerobacter thermophilus DSM 20745]
Length = 477
Score = 42.0 bits (97), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P ++ +L L E RP A + Q+ L+ + V + L +ALSNL++ AL T
Sbjct: 303 PLDLGALLDRLVEGFRPQADTKGVQLTLTIPPEPCWVQGDTHLLTRALSNLLDNALRYTP 362
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM 536
GG+V + P+G + I D GP +
Sbjct: 363 SGGQVRVACRTEPSG-VIFTIADTGPGI 389
>gi|194367611|ref|YP_002030221.1| integral membrane sensor signal transduction histidine kinase
[Stenotrophomonas maltophilia R551-3]
gi|194350415|gb|ACF53538.1| integral membrane sensor signal transduction histidine kinase
[Stenotrophomonas maltophilia R551-3]
Length = 463
Score = 41.6 bits (96), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID 530
L V+ +E L+Q L+NL+E AL T GG+V + +A PAG L+V D
Sbjct: 347 LQVSGDERRLQQVLANLLENALRYTHTGGRVRVQAARVPAGVQLIVED 394
>gi|359795261|ref|ZP_09297886.1| His Kinase A phosphoacceptor domain-containing protein 14
[Achromobacter arsenitoxydans SY8]
gi|359366680|gb|EHK68352.1| His Kinase A phosphoacceptor domain-containing protein 14
[Achromobacter arsenitoxydans SY8]
Length = 470
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 440 APLKQNGI--RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALS 497
A L + G P +++D+ + + P A +Q + L + +V+ E LR+A+S
Sbjct: 297 ASLAEGGFAAEPVDLADLADGVIRTLLPAARARQLDIGLEANCRPAMVSGAEWLLREAVS 356
Query: 498 NLIEGALMRTQVGG----KVEIVSAAAPAGDALVVIDDDGPDM 536
NL++ A+ GG ++EI SA +A + ++DDGP M
Sbjct: 357 NLVDNAIRYAAQGGVVTVRIEIGSA-----EARLAVEDDGPGM 394
>gi|407647457|ref|YP_006811216.1| signal transduction histidine kinase [Nocardia brasiliensis ATCC
700358]
gi|407310341|gb|AFU04242.1| signal transduction histidine kinase [Nocardia brasiliensis ATCC
700358]
Length = 341
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+ P ++ +++ ++ A RP A Q ++ + ++V + AL + L+NL+ A+
Sbjct: 184 LEPVDLRELIDEVLAANRPTAARAQVELRAEQPDSRIVVTANDQALGRVLTNLVSNAIAH 243
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
T GG+V + SA G A +DD GP +
Sbjct: 244 TPPGGEVAL-SAGTADGQAWARVDDTGPGI 272
>gi|428305252|ref|YP_007142077.1| GAF sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
gi|428246787|gb|AFZ12567.1| GAF sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
Length = 827
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
IRP N+ V+ +AVRP A+ + Q+EL S LV+ + ++Q L NL+ A+
Sbjct: 519 IRPVNLLPVIESAIDAVRPAANAKAIQLELVPNSSIGLVSADSDRIQQVLWNLLSNAIKF 578
Query: 507 TQVGGKVEI 515
T GGKV++
Sbjct: 579 TPDGGKVKV 587
>gi|407688920|ref|YP_006804093.1| PAS sensor signal transduction histidine kinase [Alteromonas
macleodii str. 'Balearic Sea AD45']
gi|407292300|gb|AFT96612.1| PAS sensor signal transduction histidine kinase [Alteromonas
macleodii str. 'Balearic Sea AD45']
Length = 943
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+P NV ++LG E ++PL +Q + + ++++ + V + L Q SN+I A T
Sbjct: 645 KPVNVCEILGTAIETIQPLIDEKQHTLLVEKVAEPVWVNGDLIRLSQIFSNIINNAAKYT 704
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDG 533
GG +E+ + G + + D+G
Sbjct: 705 PPGGNIEVCISTCD-GKVTIAVKDNG 729
>gi|127511032|ref|YP_001092229.1| integral membrane sensor signal transduction histidine kinase
[Shewanella loihica PV-4]
gi|126636327|gb|ABO21970.1| integral membrane sensor signal transduction histidine kinase
[Shewanella loihica PV-4]
Length = 419
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
++P +++D+ DLFE +A + + LS L Q V ++ L QAL NL++ A+
Sbjct: 278 LQPLSLNDLCQDLFEMAEAMAESNGQTLSLS-LDQDYSVMGDKYLLFQALFNLVDNAIKY 336
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ G K+EI+ ++I D+GP +
Sbjct: 337 SGEGAKIEIIQQGNE-----ILIRDNGPGI 361
>gi|445496910|ref|ZP_21463765.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Janthinobacterium sp.
HH01]
gi|444786905|gb|ELX08453.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Janthinobacterium sp.
HH01]
Length = 740
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELS--ELSQSLLVAVEEPALRQALSNLIEGALMR 506
P NV+DV+ D E PL +Q + EL+ E+ Q VA + L Q L N++ A
Sbjct: 448 PLNVADVVADAVEQAEPLFQTKQHRFELTLPEVPQQ--VAGDHKRLVQVLVNVLNNAAKY 505
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
T VGG +++ + AG +V+ D G M
Sbjct: 506 TPVGGTIKL-AVRGEAGLVRLVVSDSGIGM 534
>gi|158333496|ref|YP_001514668.1| hypothetical protein AM1_0268 [Acaryochloris marina MBIC11017]
gi|158303737|gb|ABW25354.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
Length = 386
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+ PCN+ D++ + A++P H+Q + +E+ S +V ++ + Q NL+ AL
Sbjct: 240 VEPCNLHDLVAENIRALQP--HLQSQGMEICYPQTSEVVWIDRWQMLQVFDNLLSNALHF 297
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAY 548
+ GG++ + + L+ + D GP + + F+ Y
Sbjct: 298 SPQGGQITLTWQRFQT-EILIEVRDQGPGLSSEDLCCMFSPY 338
>gi|423118904|ref|ZP_17106588.1| phosphate regulon sensor protein phoR [Klebsiella oxytoca 10-5246]
gi|376399550|gb|EHT12164.1| phosphate regulon sensor protein phoR [Klebsiella oxytoca 10-5246]
Length = 431
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 470 QQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVI 529
QQ+Q + ++L+V E LR A+SNL+ A+ T G ++ + AP G AL +
Sbjct: 296 QQKQTLHFHVDETLVVLGNEEQLRSAISNLVYNAINHTPAGTEITVSWQRAPHG-ALFSV 354
Query: 530 DDDGPDM 536
+D+GP +
Sbjct: 355 EDNGPGI 361
>gi|423014855|ref|ZP_17005576.1| His Kinase A phosphoacceptor domain-containing protein 14
[Achromobacter xylosoxidans AXX-A]
gi|338782105|gb|EGP46482.1| His Kinase A phosphoacceptor domain-containing protein 14
[Achromobacter xylosoxidans AXX-A]
Length = 466
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVA 486
A+ + +P AP P +++++ + + P A +Q + L + ++V
Sbjct: 288 ARAKDASLPEAGFAP------EPVDLAELAHAVIRGLLPTARARQLDIGLDAETGPVVVN 341
Query: 487 VEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ LR+A+SNL++ A+ T GG V + P G A + ++DDGP M
Sbjct: 342 GADWLLREAVSNLVDNAIRYTAPGGMVTVQVRNLP-GQAWLTVEDDGPGM 390
>gi|375259287|ref|YP_005018457.1| phosphate regulon sensor protein [Klebsiella oxytoca KCTC 1686]
gi|397656268|ref|YP_006496970.1| phosphate regulon sensor protein PhoR [Klebsiella oxytoca E718]
gi|402843134|ref|ZP_10891536.1| phosphate regulon sensor kinase PhoR [Klebsiella sp. OBRC7]
gi|423101552|ref|ZP_17089254.1| phosphate regulon sensor protein phoR [Klebsiella oxytoca 10-5242]
gi|365908765|gb|AEX04218.1| phosphate regulon sensor protein [Klebsiella oxytoca KCTC 1686]
gi|376391340|gb|EHT04019.1| phosphate regulon sensor protein phoR [Klebsiella oxytoca 10-5242]
gi|394344878|gb|AFN30999.1| Phosphate regulon sensor protein PhoR (SphS) [Klebsiella oxytoca
E718]
gi|402277765|gb|EJU26833.1| phosphate regulon sensor kinase PhoR [Klebsiella sp. OBRC7]
Length = 429
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 470 QQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVI 529
QQRQV + +SL V E LR A+SNL+ A+ T G + + AP G AL +
Sbjct: 296 QQRQVLHFSVDESLKVLGNEEQLRSAISNLVYNAVNHTPPGTDITVSWQRAPHG-ALFSV 354
Query: 530 DDDGPDM 536
+D+GP +
Sbjct: 355 EDNGPGI 361
>gi|298715823|emb|CBJ28288.1| Two component sensor histidine kinase [Ectocarpus siliculosus]
Length = 480
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 15/139 (10%)
Query: 264 DHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNL-------V 316
D E RV D+RL I RS+ +A V+DQK W ++ L +
Sbjct: 139 DIENARVLWGERDKRLLE-TIARSVGVAAVLDQKQ------RWAAVMQVEPLRKVVAESL 191
Query: 317 EQIRGPLSSIQTLSKMLSLHMKRSE-ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANI 375
Q++ P+++++T K+L + + + ++ ++ +DI++Q DRL L + + L +
Sbjct: 192 HQVKNPMTALRTFGKLLLRRLPQDDTLNRELAKDIILQSDRLVDILLPVDAVLGLLATAV 251
Query: 376 VRYNEETLKKMNNSAYSHP 394
R E + + ++ S P
Sbjct: 252 EREREAQMPGVQDALLSPP 270
>gi|357417166|ref|YP_004930186.1| sensory histidine kinase CreC [Pseudoxanthomonas spadix BD-a59]
gi|355334744|gb|AER56145.1| sensory histidine kinase CreC [Pseudoxanthomonas spadix BD-a59]
Length = 478
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 437 LALAPLKQNGI----RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL 492
LALA ++Q+G P + D+ AVR ++E+ +L+ L V + L
Sbjct: 316 LALAEVEQHGWLQSREPVALQDLFSQATGAVRTRLDAADVRLEV-QLADGLAVHGDGFLL 374
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
RQALSNL++ A+ + GG++ ++SA A + + DDGP +
Sbjct: 375 RQALSNLLDNAIAFSPRGGRI-VLSAVAQGDQVEISVRDDGPGV 417
>gi|393777102|ref|ZP_10365395.1| signal transduction histidine kinase [Ralstonia sp. PBA]
gi|392715803|gb|EIZ03384.1| signal transduction histidine kinase [Ralstonia sp. PBA]
Length = 533
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
LR+ALSNL++ A+ VGGKV + + A++VI+D+GP +
Sbjct: 408 LREALSNLLDNAIKYVPVGGKVTVRAGYTDTVQAMIVIEDNGPGI 452
>gi|398863806|ref|ZP_10619348.1| signal transduction histidine kinase [Pseudomonas sp. GM78]
gi|398246221|gb|EJN31717.1| signal transduction histidine kinase [Pseudomonas sp. GM78]
Length = 462
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAH--KRGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPAGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|338739930|ref|YP_004676892.1| two-component sensor histidine kinase [Hyphomicrobium sp. MC1]
gi|337760493|emb|CCB66326.1| putative two-component sensor histidine kinase [Hyphomicrobium sp.
MC1]
Length = 462
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
VEL +L + +E ALR+ +NLI+ AL + G K V+A A G V+IDDDG
Sbjct: 327 VELELPGNTLTLMGDEVALRRLFTNLIDNAL---RYGAKAPKVTAGAIGGRVRVLIDDDG 383
Query: 534 PDM 536
P +
Sbjct: 384 PGI 386
>gi|406896317|gb|EKD40641.1| hypothetical protein ACD_74C00278G0003 [uncultured bacterium]
Length = 468
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+P +++ ++ ++ + ++ LA ++ Q + + ++ + V+ LRQA+ NL++ A+ T
Sbjct: 300 QPTDLNALVAEVIDCLQVLAE-EKEQTLIQDDTEPVFAKVDYAILRQAVINLVDNAIKYT 358
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
Q G + +V A DA++ I D+GP +
Sbjct: 359 QPRGGIRVVVRPKAARDAVIEIIDNGPGI 387
>gi|302387090|ref|YP_003822912.1| integral membrane sensor signal transduction histidine kinase
[Clostridium saccharolyticum WM1]
gi|302197718|gb|ADL05289.1| integral membrane sensor signal transduction histidine kinase
[Clostridium saccharolyticum WM1]
Length = 345
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P N+SD+ D+++ A +Q+ + LS ++ + + + +A+SN+++ AL T
Sbjct: 196 PENISDMFNDIYQHFEFRAKGEQKTILLSG-PDNIELFCDRNWITEAISNIVKNALDHTD 254
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMH 537
GG++ I PA ++V D+G +H
Sbjct: 255 TGGRIAIEWKKLPAVTQIIV-RDNGSGIH 282
>gi|198276094|ref|ZP_03208625.1| hypothetical protein BACPLE_02281 [Bacteroides plebeius DSM 17135]
gi|198270906|gb|EDY95176.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides plebeius DSM 17135]
Length = 1325
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 458 DLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPA-------LRQALSNLIEGALMRTQVG 510
D+ +R + Q Q ++ ++ S EE LR+ +SNL+ A T VG
Sbjct: 874 DVIAFLREMTEEFQNQAQVKNITFSFRADNEEACCWADRRQLRKVISNLLSNAFKYTPVG 933
Query: 511 GKVEIVSAAAPAGDALVVID 530
GKVE+V+ G + VID
Sbjct: 934 GKVELVAGVTEKGIEIKVID 953
>gi|395494258|ref|ZP_10425837.1| sensory transduction histidine kinase [Sphingomonas sp. PAMC 26617]
Length = 469
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
RP N+S+V+G + A +P+A + + L+E L+VA + L Q L+NLI+ A+
Sbjct: 306 FRPVNLSEVIGHVVAAHQPVAEDDGKAL-LAEHEPGLVVAGDAELLAQMLTNLIDNAIRH 364
Query: 507 TQVGGKVEIVSAAAPAGDALV-VIDDDGP 534
T G IVS D+++ I DDGP
Sbjct: 365 TPAGSL--IVSKLERMDDSVIATISDDGP 391
>gi|390630653|ref|ZP_10258631.1| Two-component system histidine kinase, sensor protein, phosphate
transport regulon [Weissella confusa LBAE C39-2]
gi|390484120|emb|CCF30979.1| Two-component system histidine kinase, sensor protein, phosphate
transport regulon [Weissella confusa LBAE C39-2]
Length = 456
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 437 LALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQAL 496
+A P +Q P +SD++ D+F++ A QQ ++ +E++ S V + LRQ L
Sbjct: 296 IAKVPERQETPTPIKLSDMVNDIFKSQAENADKQQLTLQ-NEVAPSFTVTQDATVLRQIL 354
Query: 497 SNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+NLI A+ + G V+ VSA A + +V + D G
Sbjct: 355 TNLIVNAVKYNRHDGLVK-VSAMVTASEFVVAVKDTG 390
>gi|389685266|ref|ZP_10176590.1| sensor histidine kinase [Pseudomonas chlororaphis O6]
gi|388550919|gb|EIM14188.1| sensor histidine kinase [Pseudomonas chlororaphis O6]
Length = 461
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 18/146 (12%)
Query: 392 SHPESIRSQLSNNFSRENSGNKLQNSCKPLS-LDTPAKDIEMPMPPLALAPLKQNGIRPC 450
S PE+ RS L + + L N L+ ++ A+ I + G +
Sbjct: 274 SEPETWRSTLESAAQGTDRLTHLANQLLSLARIENGARAI------------AEGGAQLL 321
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
++S + +L A+ PLAH + + L E + + + E L + LSNL++ AL T+ G
Sbjct: 322 DLSQLARELGMAMAPLAHARGIALAL-EADEPVWLRGEPTLLNELLSNLVDNALAHTRPG 380
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDM 536
G V I+ +AP A++ ++DDGP +
Sbjct: 381 GNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|315121866|ref|YP_004062355.1| two-component sensor histidine kinase transcriptional regulatory
protein [Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313495268|gb|ADR51867.1| putative two-component sensor histidine kinase transcriptional
regulatory protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 498
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
V +E +RQ + NL+ A+ T +GGKV + G + I D+GP +
Sbjct: 361 VWADEKGMRQVILNLLSNAVKFTSIGGKVRVKVGWTAGGGQYISIKDNGPGI 412
>gi|428780707|ref|YP_007172493.1| histidine kinase [Dactylococcopsis salina PCC 8305]
gi|428694986|gb|AFZ51136.1| histidine kinase [Dactylococcopsis salina PCC 8305]
Length = 485
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 119/274 (43%), Gaps = 62/274 (22%)
Query: 271 YKFSADQRLNAINICRSLAMAYVMDQKSML-------LQQSSWQNNARMSNLVEQIRGPL 323
++F+ QR ++A+A V+DQ+ L Q Q R+ +++ Q+R PL
Sbjct: 186 WEFTQIQR-----TAGTIALACVLDQRYGLSQQKLRQQQWQQEQQRDRLDDILHQLRNPL 240
Query: 324 SSIQTLSKML--SLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEE 381
+++T K+L L+ + ++ S E+IM + DRL+ LQ++ D FL + E
Sbjct: 241 MALRTFGKLLLKRLNPEENQKSRSFAENIMRESDRLQQLLQDMGD--FLEEMG------E 292
Query: 382 TLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAP 441
+ + PE GN S P + D+E
Sbjct: 293 EEVTIETETTALPE---------------GNSTVKSLPP----SQVFDLET--------- 324
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNL 499
V++V+ + E++R +A Q++ + L +++ SL LV A + L+NL
Sbjct: 325 --------IQVTEVITPILESIRAIA--QEKNITLKTQIPDSLPLVKANRKAFGEVLNNL 374
Query: 500 IEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
++ A+ T G +E++ + ++I D+G
Sbjct: 375 LDNAIKYTPEKGSIELIIYQENSQKQNLMIRDNG 408
>gi|188588291|ref|YP_001921255.1| Two component system histidine kinase [Clostridium botulinum E3
str. Alaska E43]
gi|188498572|gb|ACD51708.1| Two component system histidine kinase [Clostridium botulinum E3
str. Alaska E43]
Length = 681
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
I ++SD+ + F ++ LA+ + ++ L+ ++ ++ L+Q L NLI ++
Sbjct: 517 IGEYSISDIAMESFSVLKSLAYRKNIEINLNIEPSDFIIKIDANKLKQILYNLISNSIKF 576
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDG 533
T+ GGK++I A L +I+D+G
Sbjct: 577 TEEGGKIQINITKNLAYMKL-IIEDNG 602
>gi|398964197|ref|ZP_10680144.1| signal transduction histidine kinase [Pseudomonas sp. GM30]
gi|398148772|gb|EJM37440.1| signal transduction histidine kinase [Pseudomonas sp. GM30]
Length = 461
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 20/147 (13%)
Query: 392 SHPESIRSQLSNNFSRENSGNKLQNSCKPLS-LDTPAKDIEMPMPPLALAPLKQNGIRPC 450
S PE+ R+ L ++ + L N L+ ++ A+ I + G +
Sbjct: 274 SEPETWRTTLESSAQSTDRLTHLANQLLSLARVENGARAI------------AEGGAQLL 321
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
++S + +L A+ PLAH R V L+ E + + + E L + LSNL++ AL T
Sbjct: 322 DLSQLARELGMAMAPLAHA--RGVALALEADEPVWLRGEPTLLNELLSNLVDNALAHTPP 379
Query: 510 GGKVEIVSAAAPAGDALVVIDDDGPDM 536
GG V I+ AAP A++ ++DDGP +
Sbjct: 380 GGNV-ILRVAAP---AVLEVEDDGPGI 402
>gi|238028503|ref|YP_002912734.1| sensor histidine kinase [Burkholderia glumae BGR1]
gi|237877697|gb|ACR30030.1| sensor histidine kinase [Burkholderia glumae BGR1]
Length = 439
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 437 LALAPLKQNG---IRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPAL 492
LALA + +G I P + +VL A +A Q+R ++L E ++ ++ + AL
Sbjct: 271 LALARSEPDGAGVIEPVALDEVLAGCVSAYAIVA--QKRGIDLGIEATEPAVIDADIGAL 328
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
R ++N+++ A+ T GG++++ AP G ALV I D GP +
Sbjct: 329 RVMINNVLDNAVKYTPDGGRIDVSLGFAPDGPALVRIADSGPGI 372
>gi|251778814|ref|ZP_04821734.1| Two component system histidine kinase [Clostridium botulinum E1
str. 'BoNT E Beluga']
gi|243083129|gb|EES49019.1| Two component system histidine kinase [Clostridium botulinum E1
str. 'BoNT E Beluga']
Length = 681
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
I ++SD+ + F ++ LA+ + ++ L+ ++ ++ L+Q L NLI ++
Sbjct: 517 IGEYSISDIAMESFSVLKSLAYRKNIEINLNIEPSDFIIKIDANKLKQILYNLISNSIKF 576
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDG 533
T+ GGK++I A L +I+D+G
Sbjct: 577 TEEGGKIQINITKNLAYMKL-IIEDNG 602
>gi|110597378|ref|ZP_01385665.1| ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium
ferrooxidans DSM 13031]
gi|110340922|gb|EAT59393.1| ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium
ferrooxidans DSM 13031]
Length = 372
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
++PC V D L + V A +Q ++L + +++V + LRQA N+I AL
Sbjct: 218 MKPCRVQDELETIVTLVMNDARKRQVALQLQPNAVAMIVMADSEKLRQAFLNIIINALQA 277
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
T GG+V I + A + D GP +
Sbjct: 278 TPEGGRVTISTTIAEHAFCEIRFRDSGPGV 307
>gi|17547655|ref|NP_521057.1| transmembrane sensor kinase transcription regulator protein
[Ralstonia solanacearum GMI1000]
gi|17429959|emb|CAD16643.1| putative transmembrane sensor kinase transcription regulator
protein [Ralstonia solanacearum GMI1000]
Length = 500
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 37/177 (20%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R L+ +R S N+L +
Sbjct: 264 AVLLTQA------EYALRETD------PVRVREGLAAIIARLQSTNRLTSQL-------- 303
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAV----RPLAHMQQRQVEL--SELS 480
LALA + G + LG+L +V PLA +Q+ + S L+
Sbjct: 304 ----------LALARARHAGQDAPPETFDLGELARSVVVDALPLAREKQQDLGWDDSGLA 353
Query: 481 QSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMH 537
+L V+ LR+ALSNL+ A+ T GG++ V A + ALV +DD GP M+
Sbjct: 354 AALPVSGYPAFLREALSNLVHNAIRYTPPGGRI-TVRAIKDSDAALVCVDDTGPGMN 409
>gi|182413629|ref|YP_001818695.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
gi|177840843|gb|ACB75095.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
Length = 1085
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELS-QSLLVAVEEPALRQALSNLIEGALM 505
+RP + +L D +RP A Q+R ++EL+ V + L+Q N+++ A+
Sbjct: 776 LRPVSAEQILQDALSVIRPDAE-QKRITLVTELTAHRTTVRGDAVRLQQVFWNVLKNAVK 834
Query: 506 RTQVGGKVEIVSAAAPAGDAL-VVIDDDGPDMHYMVIIANFAAYS 549
T GG++ + SA GD L V + D+G M I F A++
Sbjct: 835 FTPAGGRITVTSANLRGGDTLRVAVRDNGIGMTPAEIARVFDAFT 879
>gi|150391004|ref|YP_001321053.1| integral membrane sensor signal transduction histidine kinase
[Alkaliphilus metalliredigens QYMF]
gi|149950866|gb|ABR49394.1| integral membrane sensor signal transduction histidine kinase
[Alkaliphilus metalliredigens QYMF]
Length = 458
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 46/95 (48%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
I N++ +L +L R A Q +ELS ++ + + + L+QAL N+I +
Sbjct: 304 IEKINLNRLLDELVMITRKFAEQQDVAIELSNMNDAYEIEGDSDKLKQALINIILNGIQA 363
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVI 541
+ GG++EI ++++ D+G + ++
Sbjct: 364 MEQGGRLEISLKKTEKEESVITFKDEGRGIEKRIV 398
>gi|410422433|ref|YP_006902882.1| sensor kinase protein [Bordetella bronchiseptica MO149]
gi|427823035|ref|ZP_18990097.1| putative sensor kinase protein [Bordetella bronchiseptica Bbr77]
gi|408449728|emb|CCJ61420.1| putative sensor kinase protein [Bordetella bronchiseptica MO149]
gi|410588300|emb|CCN03357.1| putative sensor kinase protein [Bordetella bronchiseptica Bbr77]
Length = 471
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 440 APLKQNGI--RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALS 497
A L + G+ +++++ + A+ P A +Q + L + + V E LR+ALS
Sbjct: 298 ASLAEGGLPLETVDLAELADGVIRALLPAARARQLDLGLDVQAAPVRVQAVEWLLREALS 357
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
NL++ A+ T G +V V G A +V++D+GP M
Sbjct: 358 NLVDNAIRYTARGSEV-TVKVHTEGGHAWLVVEDNGPGM 395
>gi|308808247|ref|XP_003081434.1| COG0642: Signal transduction histidine kinase (ISS) [Ostreococcus
tauri]
gi|116059896|emb|CAL55603.1| COG0642: Signal transduction histidine kinase (ISS) [Ostreococcus
tauri]
Length = 457
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 273 FSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKM 332
FS+ Q+ + + A+ + + ++L ++++ + ++ + + R PL++++TL M
Sbjct: 150 FSSKQKQFLESAANAFTDAWAIHRNNVLAAAAAYRADQKLGVYLYESRQPLNALRTLGGM 209
Query: 333 LSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVF---LTKANIVRY 378
L +H+K + + D+ E ++ QGD L ++L+ ++ TK V Y
Sbjct: 210 LKIHLKPDDPAGDMAEAMVQQGDALAELSRQLESVLYPNATTKIEGVSY 258
>gi|384214836|ref|YP_005606000.1| phosphate regulon, two-component sensor histidine kinase
[Bradyrhizobium japonicum USDA 6]
gi|354953733|dbj|BAL06412.1| phosphate regulon, two-component sensor histidine kinase
[Bradyrhizobium japonicum USDA 6]
Length = 432
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 447 IRPCNVSDVLGDLFE---AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGA 503
+RP + D+L +F+ + PLA +Q +VE +++A + L + NLIE A
Sbjct: 267 VRPDTLVDLLPIIFQVADGLEPLARERQVEVETHLPETPVMIAGDREELLRLFENLIENA 326
Query: 504 LMRTQVGGKVEIVSAAAPAGDAL----VVIDDDGPDM 536
L GG+V + AAA A D V++ D GP +
Sbjct: 327 LKYGASGGRVIVSLAAAAATDGTQEIRVMVRDFGPGI 363
>gi|443324923|ref|ZP_21053644.1| signal transduction histidine kinase [Xenococcus sp. PCC 7305]
gi|442795482|gb|ELS04848.1| signal transduction histidine kinase [Xenococcus sp. PCC 7305]
Length = 436
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 283 NICRSLAMAYVMDQKSMLLQQS--------SWQNNARMSNLVEQIRGPLSSIQTLSKMLS 334
+I +SLA+A ++++S ++ +W+ + R +L+ Q+R PL++++T SK+L
Sbjct: 145 DIAQSLAIARFLERQSQWYREQLSKQENLFNWEQD-RTDDLLHQLRNPLTALRTFSKLLL 203
Query: 335 LHMKRSEISYDIVEDIMVQGDRLRGTLQELQ 365
+ + I + I+ + D L LQ+ +
Sbjct: 204 KRFVSNSREHSIADSILRESDHLANLLQQFE 234
>gi|359783013|ref|ZP_09286231.1| sensory histidine protein kinase TctE [Pseudomonas psychrotolerans
L19]
gi|359369159|gb|EHK69732.1| sensory histidine protein kinase TctE [Pseudomonas psychrotolerans
L19]
Length = 467
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIE 501
+ + G +SD+ +L A+ PLAH + + +++ ++ E L + L NL+E
Sbjct: 317 IAEGGAERLELSDLARELAMALAPLAHAKGVALAFEPFAKAPVIG-EPTLLNELLCNLVE 375
Query: 502 GALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
AL +Q GG + +V AP A++ ++DDGP +
Sbjct: 376 NALAHSQSGGNI-VVRVLAP---AVLEVEDDGPGI 406
>gi|398872626|ref|ZP_10627913.1| signal transduction histidine kinase [Pseudomonas sp. GM74]
gi|398202160|gb|EJM89011.1| signal transduction histidine kinase [Pseudomonas sp. GM74]
Length = 462
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH +R + L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAH--KRGIALALEADEPVWLGGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|386720365|ref|YP_006186691.1| sensory histidine kinase [Stenotrophomonas maltophilia D457]
gi|384079927|emb|CCH14530.1| Sensory histidine kinase [Stenotrophomonas maltophilia D457]
Length = 463
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID 530
L V+ +E L+Q L+NL+E AL T GG+V + +A PAG L+V D
Sbjct: 347 LQVSGDERRLQQVLANLLENALRYTHGGGRVRVQAARVPAGVQLIVED 394
>gi|160903064|ref|YP_001568645.1| PAS/PAC sensor signal transduction histidine kinase [Petrotoga
mobilis SJ95]
gi|160360708|gb|ABX32322.1| PAS/PAC sensor signal transduction histidine kinase [Petrotoga
mobilis SJ95]
Length = 929
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 39/92 (42%)
Query: 443 KQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEG 502
K N I N+ +++ + + V L + +L+ V++ ++Q L NLI+
Sbjct: 776 KINQIEEVNLIEIIRGIILMYEDFIQQKHVMVNTDWLKEEILIKVDKDKIKQVLMNLIKN 835
Query: 503 ALMRTQVGGKVEIVSAAAPAGDALVVIDDDGP 534
AL GK++I I +DGP
Sbjct: 836 ALESVNNNGKIDIKVGFTAENKVFFEITNDGP 867
>gi|427817301|ref|ZP_18984364.1| putative sensor kinase protein [Bordetella bronchiseptica D445]
gi|410568301|emb|CCN16334.1| putative sensor kinase protein [Bordetella bronchiseptica D445]
Length = 471
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 440 APLKQNGI--RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALS 497
A L + G+ +++++ + A+ P A +Q + L + + V E LR+ALS
Sbjct: 298 ASLAEGGLPLETVDLAELADGVIRALLPAARARQLDLGLDVQAAPVRVQAVEWLLREALS 357
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
NL++ A+ T G +V V G A +V++D+GP M
Sbjct: 358 NLVDNAIRYTARGSEV-TVKVHTDGGHAWLVVEDNGPGM 395
>gi|344209283|ref|YP_004794424.1| integral membrane sensor signal transduction histidine kinase
[Stenotrophomonas maltophilia JV3]
gi|343780645|gb|AEM53198.1| integral membrane sensor signal transduction histidine kinase
[Stenotrophomonas maltophilia JV3]
Length = 467
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID 530
L V+ +E L+Q L+NL+E AL T GG+V + +A PAG L+V D
Sbjct: 351 LQVSGDERRLQQVLANLLENALRYTNTGGRVRVQAARIPAGVQLIVED 398
>gi|340620094|ref|YP_004738547.1| two-component system-sensor histidine kinase [Zobellia
galactanivorans]
gi|339734891|emb|CAZ98268.1| Two-component system-Sensor histidine kinase [Zobellia
galactanivorans]
Length = 497
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 439 LAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSN 498
+ P+K+ P +++++ DL R LA +Q +++L ++ +V + + +AL N
Sbjct: 342 VTPVKE----PFSITELSHDLIAKFRVLAEQKQIELQLDNPQENCMVFADVSLVERALQN 397
Query: 499 LIEGALMRTQVGGKVEI 515
LIE AL TQ GKV +
Sbjct: 398 LIENALKYTQANGKVTL 414
>gi|392382608|ref|YP_005031805.1| two-component sensor histidine kinase [Azospirillum brasilense
Sp245]
gi|356877573|emb|CCC98415.1| two-component sensor histidine kinase [Azospirillum brasilense
Sp245]
Length = 587
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P V+ +LG+ E V LA + +++ S + L V + LRQA+ NL+ A+ T
Sbjct: 419 PVRVAVLLGECVELVEALAGQKGVRMDCSPIEPGLTVMADAMRLRQAVLNLLSNAIKFTP 478
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM 536
GG+V + +A G + + D G M
Sbjct: 479 AGGRVRVDAARGGDGCVSLTVADTGIGM 506
>gi|425446294|ref|ZP_18826302.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9443]
gi|389733523|emb|CCI02707.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9443]
Length = 418
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAV 368
+ + I+ + DR+R + E + +
Sbjct: 193 GNDPAITGILRESDRVRDLIAEFEGQI 219
>gi|397905171|ref|ZP_10506042.1| Phosphate regulon sensor protein PhoR (SphS) [Caloramator
australicus RC3]
gi|397161820|emb|CCJ33376.1| Phosphate regulon sensor protein PhoR (SphS) [Caloramator
australicus RC3]
Length = 572
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
NV ++L ++ ++PLA + ++ L + + + V + +Q L NL++ A+ T
Sbjct: 424 KLNVIEILEEIKYIMKPLAESKNIEIYLEKECEDIYVHGDRDKFKQMLINLLDNAIKYTN 483
Query: 509 VGGKVEIVSAAAPAGDALVVIDD 531
GGKV+I+ + + VID+
Sbjct: 484 EGGKVKIILEKSTNEVIISVIDN 506
>gi|393784376|ref|ZP_10372541.1| hypothetical protein HMPREF1071_03409 [Bacteroides salyersiae
CL02T12C01]
gi|392666152|gb|EIY59669.1| hypothetical protein HMPREF1071_03409 [Bacteroides salyersiae
CL02T12C01]
Length = 1324
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
++ N+S +L D+ E RP+A QQ + L S ++ ++E + + + NL+ A+
Sbjct: 893 VKETNISLLLEDICERFRPVAENQQIEFHLVCESSDMIGYLDEDKVVKIIGNLVSNAIKF 952
Query: 507 TQVGGKVEIVSA 518
GG+V + +A
Sbjct: 953 NSKGGRVTVFAA 964
>gi|113477356|ref|YP_723417.1| histidine kinase [Trichodesmium erythraeum IMS101]
gi|110168404|gb|ABG52944.1| histidine kinase [Trichodesmium erythraeum IMS101]
Length = 462
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 85/205 (41%), Gaps = 37/205 (18%)
Query: 312 MSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLT 371
M N++ Q++ PL++++T K+L + +++I I+ + DRLR ++++ + V
Sbjct: 182 MHNILHQLKSPLTALRTFGKLLLKKFLPEDKNWNITNSILRESDRLRELIEQIDETVDAG 241
Query: 372 KANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIE 431
K E L + Y E I +D ++
Sbjct: 242 K--------EILSISAENQYFQGEEI-------------------------IDV-HQEAN 267
Query: 432 MPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEP 490
PL L P N + V VL L + + +A+ +++ + SL +
Sbjct: 268 QKYKPLGLLP-GANFLESVFVQQVLEPLLVSAKAIANENNIDLQV-DFPDSLPTIKANSK 325
Query: 491 ALRQALSNLIEGALMRTQVGGKVEI 515
ALR+ LSN+I+ AL T + G + I
Sbjct: 326 ALREVLSNIIDNALKYTPIQGNIYI 350
>gi|408822484|ref|ZP_11207374.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas geniculata N1]
Length = 467
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID 530
L V+ +E L+Q L+NL+E AL T GG+V + +A PAG L+V D
Sbjct: 351 LQVSGDERRLQQVLANLLENALRYTHAGGRVLVQAAHVPAGVQLIVED 398
>gi|40445344|ref|NP_954804.1| hypothetical protein [Gordonia westfalica]
gi|40217374|emb|CAE09125.1| hypothetical protein [Gordonia westfalica]
Length = 170
Score = 40.0 bits (92), Expect = 3.0, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 475 ELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID-DDG 533
EL ELS++LL AVE+ A L I + R VGG +E+V A G ++ D G
Sbjct: 88 ELVELSRALLAAVEQDA--PELPATIGVKIWRASVGGDIEVVDVAVDGGTGVLAEDVAAG 145
Query: 534 PDMHYMVIIANFAAYSPPHP 553
D+ + A A PPHP
Sbjct: 146 GDLRISGVAAR-APQGPPHP 164
>gi|425898047|ref|ZP_18874638.1| sensor histidine kinase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397891735|gb|EJL08213.1| sensor histidine kinase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
Length = 461
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAH--ARGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T+ GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTRPGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|428218786|ref|YP_007103251.1| histidine kinase [Pseudanabaena sp. PCC 7367]
gi|427990568|gb|AFY70823.1| histidine kinase [Pseudanabaena sp. PCC 7367]
Length = 383
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 32/204 (15%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQN----NARMSNLVEQIRGPLSSIQTLSKMLSLHMK 338
I +LA+A +D++ L++S Q +S ++ Q+R PL++I+T +K+L+ +
Sbjct: 113 QIANTLAIACALDRRCQWLEESQKQTYLGQQQFLSTVMHQLRNPLTAIKTFAKLLARRIA 172
Query: 339 RSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIR 398
+ V I+ + ++ L E+ A RY E L + P S
Sbjct: 173 PDNPMHRFVSGILQESQHMQDILAEVDQA---------RYAAEELALPQQEMFLLPAS-- 221
Query: 399 SQLSNNFSRENSGNKLQNSCKPLSLDTPA----KDIEM-PMPPLALAPLKQNGIRPCNVS 453
+ E + L PL T A K + P L P+K NG +
Sbjct: 222 -------TLELAATDLAEILTPLLRSTEAIAETKGLSFRAYMPAELPPIKANG---GALR 271
Query: 454 DVLGDLFEAVRPLAHMQQRQVELS 477
+VLG+L + + + Q QVE++
Sbjct: 272 EVLGNLLD--NAVKYTPQGQVEIA 293
>gi|302537328|ref|ZP_07289670.1| two-component system sensor kinase [Streptomyces sp. C]
gi|302446223|gb|EFL18039.1| two-component system sensor kinase [Streptomyces sp. C]
Length = 470
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEP-ALRQALSNLIEGALMRTQ 508
++ ++ + A RP A +++ V L+E +S + +P AL AL +I+ AL T
Sbjct: 320 TDIGELAAERVAAWRPYA--EEKGVRLTEAGRSAVTGWADPIALSSALDAVIDNALKFTP 377
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM 536
G +VE VS +A ALVV+ D GP +
Sbjct: 378 AGEEVE-VSVSAEGRSALVVVADRGPGL 404
>gi|254521419|ref|ZP_05133474.1| two-component system sensor kinase [Stenotrophomonas sp. SKA14]
gi|219719010|gb|EED37535.1| two-component system sensor kinase [Stenotrophomonas sp. SKA14]
Length = 463
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID 530
L V+ +E L+Q L+NL+E AL T GG+V + +A PAG L+V D
Sbjct: 347 LQVSGDERRLQQVLANLLENALRYTHAGGRVLVQAARVPAGVQLIVED 394
>gi|398826228|ref|ZP_10584487.1| signal transduction histidine kinase [Bradyrhizobium sp. YR681]
gi|398221661|gb|EJN08065.1| signal transduction histidine kinase [Bradyrhizobium sp. YR681]
Length = 432
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 447 IRPCNVSDVL---GDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGA 503
+RP + D+L + + + PLA +Q +VE+ Q +L+A + L + NLIE A
Sbjct: 267 VRPDTLVDLLPIIRQVADGLEPLARERQVEVEIHLPEQPVLIAGDREELLRLFENLIENA 326
Query: 504 LMRTQVGGKVEIVSAAAPAGDAL----VVIDDDGPDM 536
L GG+V + A+ A D +++ D GP +
Sbjct: 327 LKYGASGGRVIVSLASGTANDGTQEVRIMVRDFGPGI 363
>gi|296132713|ref|YP_003639960.1| integral membrane sensor signal transduction histidine kinase
[Thermincola potens JR]
gi|296031291|gb|ADG82059.1| integral membrane sensor signal transduction histidine kinase
[Thermincola potens JR]
Length = 547
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
NV + + + + +RPLA QQ+ +++ S ++ + ++ +E +RQ + NL+ A+ T
Sbjct: 389 VNVGEAVRGVEKLLRPLA--QQKNIDMQSAITGTNVIIADEEKVRQVIRNLLGNAIKFTP 446
Query: 509 VGGKVEIV--SAAAPAGDALVVIDDDGPDM 536
GG++E+ P L+ + D GP +
Sbjct: 447 AGGRIELYVRDTDRPDEGVLLTVKDSGPGI 476
>gi|374586697|ref|ZP_09659789.1| LOW QUALITY PROTEIN: hypothetical protein Lepil_2883 [Leptonema
illini DSM 21528]
gi|373875558|gb|EHQ07552.1| LOW QUALITY PROTEIN: hypothetical protein Lepil_2883 [Leptonema
illini DSM 21528]
Length = 470
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
I V+D+L D+ ++ P+A +QRQ++L + ++V E +R+A+ NLI A+
Sbjct: 325 IEEIAVADLLADIAVSLEPIA--RQRQIKLDIKADQMIVRGERFLIRKAVENLIHNAIDF 382
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDM-HYMV--IIANFAAYSPPHP 553
V I AL+V DDGP + Y + I F YS P P
Sbjct: 383 APTSSTVRIACERRRGTIALLV-SDDGPGIPDYAIDRIFERF--YSLPRP 429
>gi|167035383|ref|YP_001670614.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida GB-1]
gi|166861871|gb|ABZ00279.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida GB-1]
Length = 459
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL-RQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ +++ + EP L + LSNL+
Sbjct: 313 IAEGGAQRLDLSQLARELGMAMAPLAH--KRGVALALEAEAPVWLKGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTPAGGNV-ILRVVAP---AVLEVEDDGPGI 402
>gi|302035935|ref|YP_003796257.1| hypothetical protein NIDE0557 [Candidatus Nitrospira defluvii]
gi|300603999|emb|CBK40331.1| protein of unknown function, putative Histidine kinase [Candidatus
Nitrospira defluvii]
Length = 949
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 455 VLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVE 514
++ D+ E + PLA + +EL LLV ++ L Q L+NL++ A+ T GG+V
Sbjct: 662 LVSDVVEQLLPLAITKHLNIELQSPDPELLVWADQDRLSQILTNLLDNAIKYTPDGGQVA 721
Query: 515 IVSAAAPAGDALVVIDDDG 533
+ + A +VI D+G
Sbjct: 722 VELSVDTHDMARIVIRDNG 740
>gi|92113905|ref|YP_573833.1| sensor signal transduction histidine kinase [Chromohalobacter
salexigens DSM 3043]
gi|91796995|gb|ABE59134.1| periplasmic sensor signal transduction histidine kinase
[Chromohalobacter salexigens DSM 3043]
Length = 466
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
V D++ DL+ PLAH + +++ L L Q L + +E + NL++ AL T GG
Sbjct: 327 VIDLMADLW----PLAHDRGQRLTLEGLHQ-LRIQADETEVGILFRNLLDNALRYTPEGG 381
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDM 536
VE+ G+A + + D GP +
Sbjct: 382 HVEVELGETTQGNAQIRVRDSGPGI 406
>gi|56962304|ref|YP_174029.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
gi|56908541|dbj|BAD63068.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
Length = 439
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 443 KQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIE 501
+Q +RP ++ D+ + +RPLA QQ+ + +S + ++ ++ + L +AL+NL +
Sbjct: 284 QQKNVRPIDLKDLFQQTIDGLRPLA--QQKHISISTDFEENCMIRGDSHLLERALNNLFD 341
Query: 502 GALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
A+ T G + +V + + D GP
Sbjct: 342 NAIRHTPSSGNI-VVRCYKEDANVTFSLKDTGPGF 375
>gi|398993993|ref|ZP_10696924.1| signal transduction histidine kinase [Pseudomonas sp. GM21]
gi|398133498|gb|EJM22698.1| signal transduction histidine kinase [Pseudomonas sp. GM21]
Length = 461
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 20/147 (13%)
Query: 392 SHPESIRSQLSNNFSRENSGNKLQNSCKPLS-LDTPAKDIEMPMPPLALAPLKQNGIRPC 450
S PE+ RS L + L N L+ ++ A+ I + G +
Sbjct: 274 SEPETWRSTLETAAQGTDRLTHLANQLLSLARVENGARAI------------AEGGAQLL 321
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
++S + +L A+ PLAH R V L+ E + + + E L + LSNL++ AL T
Sbjct: 322 DLSQLARELGMAMAPLAHA--RGVALALEADEPVWLRGEPTLLNELLSNLVDNALAHTPS 379
Query: 510 GGKVEIVSAAAPAGDALVVIDDDGPDM 536
GG V I+ AP A++ ++DDGP +
Sbjct: 380 GGNV-ILRVTAP---AVLEVEDDGPGI 402
>gi|383774948|ref|YP_005454017.1| two-component sensor histidine kinase [Bradyrhizobium sp. S23321]
gi|381363075|dbj|BAL79905.1| two-component sensor histidine kinase [Bradyrhizobium sp. S23321]
Length = 432
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 447 IRPCNVSDVLGDLFE---AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGA 503
+RP + D+L +F+ + PLA +Q ++E + +++A + L + NLIE A
Sbjct: 267 VRPDTLVDLLPIIFQVADGLEPLARERQVEIETNLPEAPVMIAGDREELLRLFENLIENA 326
Query: 504 LMRTQVGGKVEIV--SAAAPAG--DALVVIDDDGPDM 536
L GG+V + SAAAP G + +++ D GP +
Sbjct: 327 LKYGASGGRVIVSMNSAAAPDGTPEIRILVRDFGPGI 363
>gi|374578495|ref|ZP_09651591.1| signal transduction histidine kinase [Bradyrhizobium sp. WSM471]
gi|374426816|gb|EHR06349.1| signal transduction histidine kinase [Bradyrhizobium sp. WSM471]
Length = 432
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 9/98 (9%)
Query: 447 IRPCNVSDVLGDLFE---AVRPLAHMQQRQVELSELSQS-LLVAVEEPALRQALSNLIEG 502
+RP + D+L + + + PLA +Q +VE +EL ++ +L+A + L + NLIE
Sbjct: 267 VRPDTLVDLLPIILQVADGLEPLARERQVEVE-TELPETPVLIAGDREELLRLFENLIEN 325
Query: 503 ALMRTQVGGK--VEIVSAAAPAG--DALVVIDDDGPDM 536
AL GG+ V ++S AAP G + V++ D GP +
Sbjct: 326 ALKYGASGGRIIVSLISGAAPDGTQEIRVLVRDFGPGI 363
>gi|94314592|ref|YP_587801.1| sensory histidine kinase in two-component regulatory system with
CopR, senses copper ions [Cupriavidus metallidurans
CH34]
gi|93358444|gb|ABF12532.1| sensory histidine kinase in two-component regulatory system with
CopR, senses copper ions [Cupriavidus metallidurans
CH34]
Length = 462
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 457 GDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIV 516
G LFE LA + +QV L L +V + LR+ALSNL+ AL T G V +V
Sbjct: 320 GALFEFYEALA--EDKQVAL-RLQGDGIVEGDRLMLRRALSNLLSNALRHTPQAGAV-VV 375
Query: 517 SAAAPAGDALVVIDDDGPDM 536
A A +V +++DGP++
Sbjct: 376 EAHAEGDSVVVAVENDGPEI 395
>gi|399009588|ref|ZP_10712015.1| signal transduction histidine kinase [Pseudomonas sp. GM17]
gi|398111398|gb|EJM01282.1| signal transduction histidine kinase [Pseudomonas sp. GM17]
Length = 461
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIE 501
+ + G + ++S + +L A+ PLAH + + L E + + + E L + LSNL++
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAHARGIALAL-EADEPVWLRGEPTLLNELLSNLVD 371
Query: 502 GALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
AL T+ GG V I+ +AP A++ ++DDGP +
Sbjct: 372 NALAHTKPGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|115375189|ref|ZP_01462456.1| signal transduction histidine kinase [Stigmatella aurantiaca
DW4/3-1]
gi|115367840|gb|EAU66808.1| signal transduction histidine kinase [Stigmatella aurantiaca
DW4/3-1]
Length = 461
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 443 KQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEG 502
++ G +S+VL +L EA RP+A +++ S + L + + L Q +NL+E
Sbjct: 301 RKGGFERLCLSEVLENLVEAYRPVAEDHGQRLTAS-ICPKLFIQGDRSLLAQLFANLVEN 359
Query: 503 ALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
AL + G + + A G V + D GP +
Sbjct: 360 ALRHSGRGSAIHLGLEAGADGGFTVTVSDTGPGI 393
>gi|424921897|ref|ZP_18345258.1| Signal transduction histidine kinase [Pseudomonas fluorescens R124]
gi|404303057|gb|EJZ57019.1| Signal transduction histidine kinase [Pseudomonas fluorescens R124]
Length = 461
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAHA--RGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AAP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVAAP---AVLEVEDDGPGI 402
>gi|71906820|ref|YP_284407.1| sensor histidine kinase [Dechloromonas aromatica RCB]
gi|71846441|gb|AAZ45937.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
region:Histidine kinase A, N-terminal [Dechloromonas
aromatica RCB]
Length = 469
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQ--RQVELSELSQSLLVAVEEPALRQALSNLIEGALM 505
RP + LG L E++ Q R ++L ++S +V+ E LR+ LSNLI+ AL
Sbjct: 312 RPVD----LGKLLESIASGWFDQALARNIDLGFEAESAVVSGSEWMLREMLSNLIDNALR 367
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
T GG V + S A G + ++D+GP +
Sbjct: 368 YTPDGGTVTVRSGLAD-GRPFIEVEDNGPGI 397
>gi|22297739|ref|NP_680986.1| two-component sensor histidine kinase [Thermosynechococcus
elongatus BP-1]
gi|22293916|dbj|BAC07748.1| two-component sensor histidine kinase [Thermosynechococcus
elongatus BP-1]
Length = 385
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQ----NNARMSNLVEQIRGPLSSIQTLSKMLSLHMK 338
+ ++LA+A V+DQ+ L S Q R +L+ Q+R P+++I+T K+L ++
Sbjct: 123 QVAQTLAIACVLDQRQQWLSHSPAQPLDQRQQRFDDLLHQLRNPVAAIRTFVKLLLKRLE 182
Query: 339 RSEISYDIVEDIMVQGDRLRGTLQE 363
+ E I + +RL L++
Sbjct: 183 PDHKGRPLAEGIAKETERLMALLED 207
>gi|434401248|ref|YP_007135076.1| integral membrane sensor signal transduction histidine kinase
[Stanieria cyanosphaera PCC 7437]
gi|428272448|gb|AFZ38386.1| integral membrane sensor signal transduction histidine kinase
[Stanieria cyanosphaera PCC 7437]
Length = 454
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 437 LALAPLKQNG----IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL 492
L L L+QN +PC ++D++ DL E + LA + + V E L
Sbjct: 288 LLLVSLEQNSSPKPFQPCCLNDLIADLTEELAELATASNIHLTSQVPHFEIYVLGNESQL 347
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+ +SNLI A+ T GG V+ VS + +A++ I+D G
Sbjct: 348 YRLVSNLIANAIQYTSTGGYVQ-VSLSQSDHNAILAIEDTG 387
>gi|398852979|ref|ZP_10609617.1| signal transduction histidine kinase [Pseudomonas sp. GM80]
gi|398242433|gb|EJN28048.1| signal transduction histidine kinase [Pseudomonas sp. GM80]
Length = 461
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAH--KRGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVTAP---AVLEVEDDGPGI 402
>gi|254251537|ref|ZP_04944855.1| hypothetical protein BDAG_00726 [Burkholderia dolosa AUO158]
gi|124894146|gb|EAY68026.1| hypothetical protein BDAG_00726 [Burkholderia dolosa AUO158]
Length = 448
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 437 LALAPLKQNGI---RPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPAL 492
LALA + +G P ++ +L + A PLA Q+R ++L E +++ V + AL
Sbjct: 270 LALARAEPDGATVREPVDLHALLAECVAAYAPLA--QRRGIDLGFEEARAATVVADVGAL 327
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
R NL++ A+ T GG++++ AG A V I D GP +
Sbjct: 328 RVMFGNLLDNAVKYTPDGGRIDVSLTRDAAGRACVQIGDSGPGI 371
>gi|163749893|ref|ZP_02157138.1| sensor histidine kinase [Shewanella benthica KT99]
gi|161330407|gb|EDQ01386.1| sensor histidine kinase [Shewanella benthica KT99]
Length = 439
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
++ ++ D+ DLFE +A + Q+++ LS + + V ++ L QAL NL++ A+
Sbjct: 299 LQDLSIKDMCEDLFEMAEAMAELNQQKLLLST-GEDIKVTGDKYLLFQALFNLVDNAIKY 357
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
G +EIV A + I D+GP +
Sbjct: 358 AGDGATIEIVQAGRE-----IQIRDNGPGI 382
>gi|374578549|ref|ZP_09651645.1| histidine kinase,Response regulator receiver domain
protein,histidine kinase [Bradyrhizobium sp. WSM471]
gi|374426870|gb|EHR06403.1| histidine kinase,Response regulator receiver domain
protein,histidine kinase [Bradyrhizobium sp. WSM471]
Length = 581
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +V+ ++ ++ EA +PLA +Q+ + ++ +++ + +R+A+ NLI A+ +
Sbjct: 429 PVDVAALVKEVAEANQPLAVNKQQAISVTA-PVNIVTMCDTDRIREAIDNLISNAIKYSP 487
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+GGK+ +V + GD +V + D+G +
Sbjct: 488 IGGKIGVV-VSHEGGDTIVRVSDEGAGL 514
>gi|397693048|ref|YP_006530928.1| integral membrane sensor signal transduction [Pseudomonas putida
DOT-T1E]
gi|421522762|ref|ZP_15969402.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida LS46]
gi|397329778|gb|AFO46137.1| integral membrane sensor signal transduction [Pseudomonas putida
DOT-T1E]
gi|402753255|gb|EJX13749.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida LS46]
Length = 459
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL-RQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ +++ + EP L + LSNL+
Sbjct: 313 IAEGGAQRLDLSQLARELGMAMAPLAH--KRGVSLALEAEAPVWLKGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTPAGGNV-ILRVMAP---AVLEVEDDGPGI 402
>gi|339489118|ref|YP_004703646.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida S16]
gi|338839961|gb|AEJ14766.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida S16]
Length = 459
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL-RQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ +++ + EP L + LSNL+
Sbjct: 313 IAEGGAQRLDLSQLARELGMAMAPLAH--KRGVALALEAEAPVWLKGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTPAGGNV-ILRVLAP---AVLEVEDDGPGI 402
>gi|426408184|ref|YP_007028283.1| periplasmic sensor signal transduction histidine kinase
[Pseudomonas sp. UW4]
gi|426266401|gb|AFY18478.1| periplasmic sensor signal transduction histidine kinase
[Pseudomonas sp. UW4]
Length = 462
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH +R + L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAH--KRGIALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|398912902|ref|ZP_10656201.1| signal transduction histidine kinase [Pseudomonas sp. GM49]
gi|398181613|gb|EJM69168.1| signal transduction histidine kinase [Pseudomonas sp. GM49]
Length = 462
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH +R + L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAH--KRGIALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|398958787|ref|ZP_10677752.1| signal transduction histidine kinase [Pseudomonas sp. GM33]
gi|398146006|gb|EJM34775.1| signal transduction histidine kinase [Pseudomonas sp. GM33]
Length = 462
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH +R + L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAH--KRGIALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|289674705|ref|ZP_06495595.1| sensor histidine kinase, partial [Pseudomonas syringae pv. syringae
FF5]
Length = 406
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + +L+ E L + LSNLI
Sbjct: 258 IAEGGAQQLDLSQLARELGMAMAPLAH--SRGVALALEADEPVLLRGEPTLLNELLSNLI 315
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V ++ AP ++ ++DDGP +
Sbjct: 316 DNALAHTAPGGNV-VLRVYAP---GVLEVEDDGPGI 347
>gi|425457232|ref|ZP_18836938.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9807]
gi|389801469|emb|CCI19358.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9807]
Length = 418
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAV 368
+ + I+ + DR+R + E + +
Sbjct: 193 GNDPAITGILRESDRVRDLIAEFEAQI 219
>gi|222056250|ref|YP_002538612.1| heavy metal sensor signal transduction histidine kinase [Geobacter
daltonii FRC-32]
gi|221565539|gb|ACM21511.1| heavy metal sensor signal transduction histidine kinase [Geobacter
daltonii FRC-32]
Length = 486
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI 515
+G++ E +P+A + + + +S L+ + L A + R+A+SNLI +L T+ GG V I
Sbjct: 339 VGEIIEYYQPVA--EDKGINISCLNNATLYA-DRTLFRRAVSNLISNSLHYTEAGGSVSI 395
Query: 516 VSAAAPAGDALVVIDDDG 533
+ AP V + D G
Sbjct: 396 STRQAPNRSIEVTVRDTG 413
>gi|404403326|ref|ZP_10994910.1| putative two-component system sensor kinase [Pseudomonas
fuscovaginae UPB0736]
Length = 461
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + E L + LSNL+
Sbjct: 313 IAEGGAQRLDLSQLARELGMAMAPLAHA--RGVALALEADDPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPAGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|310823134|ref|YP_003955492.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
gi|309396206|gb|ADO73665.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
Length = 431
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 443 KQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEG 502
++ G +S+VL +L EA RP+A +++ S + L + + L Q +NL+E
Sbjct: 271 RKGGFERLCLSEVLENLVEAYRPVAEDHGQRLTAS-ICPKLFIQGDRSLLAQLFANLVEN 329
Query: 503 ALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
AL + G + + A G V + D GP +
Sbjct: 330 ALRHSGRGSAIHLGLEAGADGGFTVTVSDTGPGI 363
>gi|398892608|ref|ZP_10645620.1| signal transduction histidine kinase [Pseudomonas sp. GM55]
gi|398185181|gb|EJM72597.1| signal transduction histidine kinase [Pseudomonas sp. GM55]
Length = 462
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH +R + L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAH--KRGIALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|198282750|ref|YP_002219071.1| integral membrane sensor signal transduction histidine kinase
[Acidithiobacillus ferrooxidans ATCC 53993]
gi|218667905|ref|YP_002424945.1| sensor histidine kinase [Acidithiobacillus ferrooxidans ATCC 23270]
gi|415964791|ref|ZP_11558007.1| sensor histidine kinase [Acidithiobacillus sp. GGI-221]
gi|198247271|gb|ACH82864.1| integral membrane sensor signal transduction histidine kinase
[Acidithiobacillus ferrooxidans ATCC 53993]
gi|218520118|gb|ACK80704.1| sensor histidine kinase [Acidithiobacillus ferrooxidans ATCC 23270]
gi|339833033|gb|EGQ60908.1| sensor histidine kinase [Acidithiobacillus sp. GGI-221]
Length = 494
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
V+DVL DL + ++PL ++ Q+ S+ L V + LRQ L+NL+ A + GG
Sbjct: 344 VADVLLDLQKRMQPLTD-KKNQILDCVGSEGLGVYADPQRLRQILTNLVSNAHKYSPAGG 402
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDM 536
+++ V A A G L + D+GP +
Sbjct: 403 QIK-VRATAQQGGTLFCVSDNGPGI 426
>gi|328956719|ref|YP_004374105.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
gi|328673043|gb|AEB29089.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
Length = 571
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 437 LALAPLKQNGI----RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL 492
L L+ L+Q + + N+++ + F+ V+ A ++ ++ L E +L + V+ L
Sbjct: 405 LELSKLEQKQVPMNMQEVNLTEAVLSTFQLVKQTADEKEMKLNLIE-EDTLFITVDSSRL 463
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+Q L+NLI A++ TQ G+V V+ A++++ D+G
Sbjct: 464 KQILANLINNAVVYTQDSGEV-TVTIRKENNQAVILVSDNG 503
>gi|325110444|ref|YP_004271512.1| integral membrane sensor signal transduction histidine kinase
[Planctomyces brasiliensis DSM 5305]
gi|324970712|gb|ADY61490.1| integral membrane sensor signal transduction histidine kinase
[Planctomyces brasiliensis DSM 5305]
Length = 460
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI 515
L ++ ++PLA + LS + + +V + LRQ L NLIE A+ T + G V+
Sbjct: 317 LAEIVATMQPLATANNIHLSLSPTTSTAVVLSDRERLRQVLDNLIENAVKYTPIAGSVQ- 375
Query: 516 VSAAAPAGDALVVIDDDG 533
V+ + A A + I+D G
Sbjct: 376 VAVSMHADAATITIEDTG 393
>gi|406974114|gb|EKD97309.1| hypothetical protein ACD_23C00974G0002 [uncultured bacterium]
Length = 467
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P ++++ +GDL E LA +++ + LS LS + + LR+A+SNL+ AL T
Sbjct: 319 PIDLAEEIGDLLEYYDVLA--EEKAIALS-LSGGGQIVGDRLMLRRAVSNLLSNALRHTP 375
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM 536
GKV + G LV +++ G D+
Sbjct: 376 NEGKVTVRVEKNSEGGILVSVENTGSDI 403
>gi|338813829|ref|ZP_08625911.1| integral membrane sensor signal transduction histidine kinase
[Acetonema longum DSM 6540]
gi|337274179|gb|EGO62734.1| integral membrane sensor signal transduction histidine kinase
[Acetonema longum DSM 6540]
Length = 420
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRT 507
P ++S+++G + E +PLA M Q+ELS +++Q + + ++ L Q + L++ A T
Sbjct: 270 PLDISELIGTVAEQFKPLAEMN--QIELSVQITQKVELIADKERLHQLVVILLDNAFKYT 327
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDG 533
GG++ ++S A++ + D G
Sbjct: 328 PAGGQI-LISCFTADKQAVIYVQDTG 352
>gi|386013645|ref|YP_005931922.1| Integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida BIRD-1]
gi|313500351|gb|ADR61717.1| Integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida BIRD-1]
Length = 459
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL-RQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ +++ + EP L + LSNL+
Sbjct: 313 IAEGGAQRLDLSQLARELGMAMAPLAH--KRGVALALEAEAPVWLKGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTPAGGNV-ILRVMAP---AVLEVEDDGPGI 402
>gi|221211365|ref|ZP_03584344.1| periplasmic sensor signal transduction histidine kinase
[Burkholderia multivorans CGD1]
gi|221168726|gb|EEE01194.1| periplasmic sensor signal transduction histidine kinase
[Burkholderia multivorans CGD1]
Length = 448
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 12/182 (6%)
Query: 357 LRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQN 416
L G L L A+ KA + E + +A + ++ ++ +R + + LQ+
Sbjct: 200 LNGLLARLSGALDTQKAFVADAAHELRTPL--AAVQIQAQLVARAKDDAARREALDDLQH 257
Query: 417 SCKPLSLDTPAKDIEMPMPPLALAPLKQNGIR-PCNVSDVLGDLFEAVRPLAHMQQRQVE 475
T A + + LA A +R P ++ +L + A PLA Q+R ++
Sbjct: 258 GV------TRATRLAEQLLALARAEPDAGAVREPVDLQTLLAECVAAHAPLA--QRRNID 309
Query: 476 LS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGP 534
L E +++ V + ALR NL++ A+ T GG++++ AG A V I D GP
Sbjct: 310 LGFEETRAATVVADVGALRVMFGNLLDNAVKYTPDGGRIDVSLTRDAAGRACVQIGDSGP 369
Query: 535 DM 536
+
Sbjct: 370 GI 371
>gi|26988154|ref|NP_743579.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida KT2440]
gi|24982887|gb|AAN67043.1|AE016333_4 sensor histidine kinase TctE, putative [Pseudomonas putida KT2440]
Length = 463
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL-RQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ +++ + EP L + LSNL+
Sbjct: 317 IAEGGAQRLDLSQLARELGMAMAPLAH--KRGVALALEAEAPVWLKGEPTLLNELLSNLV 374
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 375 DNALAHTPAGGNV-ILRVMAP---AVLEVEDDGPGI 406
>gi|407701250|ref|YP_006826037.1| PAS sensor signal transduction histidine kinase [Alteromonas
macleodii str. 'Black Sea 11']
gi|407250397|gb|AFT79582.1| PAS sensor signal transduction histidine kinase [Alteromonas
macleodii str. 'Black Sea 11']
Length = 945
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+P N+ ++LG E ++PL +Q + + +++ + V + L Q SN+I A T
Sbjct: 645 KPVNLCEILGTAIETIQPLIDEKQHTLSIEKVAIPVWVNGDLIRLSQIFSNIINNAAKYT 704
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDG 533
GG +E V + G + + D+G
Sbjct: 705 PPGGNIE-VRISTFDGKVTITVKDNG 729
>gi|148549506|ref|YP_001269608.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida F1]
gi|395445157|ref|YP_006385410.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida ND6]
gi|148513564|gb|ABQ80424.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida F1]
gi|388559154|gb|AFK68295.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida ND6]
Length = 459
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL-RQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ +++ + EP L + LSNL+
Sbjct: 313 IAEGGAQRLDLSQLARELGMAMAPLAH--KRGVALALEAEAPVWLKGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTPAGGNV-ILRVMAP---AVLEVEDDGPGI 402
>gi|303247582|ref|ZP_07333853.1| integral membrane sensor signal transduction histidine kinase
[Desulfovibrio fructosovorans JJ]
gi|302491062|gb|EFL50956.1| integral membrane sensor signal transduction histidine kinase
[Desulfovibrio fructosovorans JJ]
Length = 458
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 32/184 (17%)
Query: 400 QLSNNFSRENSG--NKLQNSCKPLSLDTPAKDIE-----------------MPMPPLALA 440
Q+SNN + + G N++++ + +SL P D E M L
Sbjct: 239 QVSNNIAHDLRGPLNRIRSGLE-MSLARPVDDPEHYRTVLRQTISEIDNLLMTFNALLTI 297
Query: 441 PLKQNGIRPCNVSDV-----LGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQ 494
+ G R + +DV D+ E PLA +++ + S L+ + VA L Q
Sbjct: 298 AQAEAGTRRQDFTDVDLTSLAADVAELYEPLA--EEKDLAFSFHLAPDITVAGNRHLLSQ 355
Query: 495 ALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM---HYMVIIANFAAYSPP 551
AL+NL++ A+ T GG + + A P+G L V D GP + + +++ FA
Sbjct: 356 ALANLLDNAVKYTPDGGAITVTLTATPSGPELAVA-DTGPGIPAEYRELVLERFARLESS 414
Query: 552 HPTP 555
TP
Sbjct: 415 RNTP 418
>gi|386393627|ref|ZP_10078408.1| signal transduction histidine kinase [Desulfovibrio sp. U5L]
gi|385734505|gb|EIG54703.1| signal transduction histidine kinase [Desulfovibrio sp. U5L]
Length = 457
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 444 QNGIRPCNVSDV-----LGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSN 498
++G R + +DV GD+ E PLA + ++ L+ + V L QAL+N
Sbjct: 300 ESGARRQDFTDVDLTGLAGDVAELYEPLAEEKDLAFHVA-LAPGVTVPGNRHLLSQALAN 358
Query: 499 LIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM---HYMVIIANFAAYSPPHPTP 555
L++ A+ T GG + + A G L V D GP + H V++ FA TP
Sbjct: 359 LLDNAVKYTPAGGAITVTLGAPSTGPELAVA-DTGPGIPAEHRQVVLERFARLESSRNTP 417
>gi|384262728|ref|YP_005417915.1| Sensor protein [Rhodospirillum photometricum DSM 122]
gi|378403829|emb|CCG08945.1| Sensor protein [Rhodospirillum photometricum DSM 122]
Length = 608
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+P N+++V+ +R A + QV+ L + V +E A+RQ + NL+ A+ T
Sbjct: 443 QPVNIAEVIAACERMLRGRAREKNLQVDTLFLDEQSWVRADERAIRQIILNLLSNAVKFT 502
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDG 533
Q GG++ + G ++++ D G
Sbjct: 503 QEGGQITVTVGQEANGGLVLMVADTG 528
>gi|422303434|ref|ZP_16390785.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9806]
gi|389791582|emb|CCI12604.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9806]
Length = 418
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAV 368
+ + ++ + DR+R + E + +
Sbjct: 193 ANDPAITGMLRESDRVRDLIAEFEGQI 219
>gi|386849141|ref|YP_006267154.1| histidine kinase [Actinoplanes sp. SE50/110]
gi|359836645|gb|AEV85086.1| histidine kinase [Actinoplanes sp. SE50/110]
Length = 618
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
V L + S LV V+ +RQA+ NLI A+ T GG+++I+S + AG + + D G
Sbjct: 479 VTLHTTAASALVTVDPIRIRQAVGNLITNAIRHTPSGGRIDIISGTS-AGRLRIDVTDTG 537
Query: 534 PDM 536
P +
Sbjct: 538 PGI 540
>gi|386011967|ref|YP_005930244.1| Integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida BIRD-1]
gi|313498673|gb|ADR60039.1| Integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida BIRD-1]
Length = 420
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 445 NGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQ-SLLVAVEEPALRQALSNLIEGA 503
N +V ++L + E R A M+Q QV L L+Q + L+ E L +A N+I A
Sbjct: 267 NDFASVDVVELLAQIVEDARFEAGMKQCQVSL--LAQGAFLMHGHEELLYRAFENVIRNA 324
Query: 504 LMRTQVGGKVEIVSAAAPAGDAL-VVIDDDGP 534
+ T+ G V + +A AP G L V + D GP
Sbjct: 325 VRYTKTGTAVLVKAAPAPGGQWLQVCVSDHGP 356
>gi|449018291|dbj|BAM81693.1| probable two-component sensor histidine kinase [Cyanidioschyzon
merolae strain 10D]
Length = 911
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 312 MSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLT 371
+SN++ Q + P+++++T K+L + +++ D+ DI+VQ +RL L L D V L
Sbjct: 456 LSNILHQAKSPITALRTFGKLLLRRLPPGDVNRDLARDIIVQCERLNELLSPL-DTVTLQ 514
Query: 372 KANI 375
A +
Sbjct: 515 VAQL 518
>gi|188581323|ref|YP_001924768.1| response regulator receiver sensor signal transduction histidine
kinase [Methylobacterium populi BJ001]
gi|179344821|gb|ACB80233.1| response regulator receiver sensor signal transduction histidine
kinase [Methylobacterium populi BJ001]
Length = 613
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +++ + ++ EA RPLA + +++ +++L+ L + + LR+AL NL+ A+ +
Sbjct: 459 PVDLAGLAREVCEANRPLAESKGQRL-ITDLAGPLQLCGDAERLREALDNLVSNAIKYSY 517
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM 536
GG + V A AGD + + D GP +
Sbjct: 518 PGGTI-TVRVRAEAGDYVCAVADQGPGL 544
>gi|421486269|ref|ZP_15933816.1| His Kinase A phosphoacceptor domain-containing protein 14
[Achromobacter piechaudii HLE]
gi|400195482|gb|EJO28471.1| His Kinase A phosphoacceptor domain-containing protein 14
[Achromobacter piechaudii HLE]
Length = 470
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
++ D+ + + P A +Q + L + +LV+ E LR+A +NL++ A+
Sbjct: 309 VDLVDLADGVIRGLLPTARARQLDIGLEAAVRPVLVSGTEWLLREAATNLVDNAIRYASP 368
Query: 510 GGKVEIVSAAAPAGDALVVIDDDGPDM 536
G+V V+ A G A ++++DDGP M
Sbjct: 369 AGEV-TVTVQAGDGLARLIVEDDGPGM 394
>gi|323136675|ref|ZP_08071756.1| integral membrane sensor signal transduction histidine kinase
[Methylocystis sp. ATCC 49242]
gi|322397992|gb|EFY00513.1| integral membrane sensor signal transduction histidine kinase
[Methylocystis sp. ATCC 49242]
Length = 511
Score = 39.3 bits (90), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 470 QQRQVELSELSQSLL--VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALV 527
Q+R + + E+ + L + +E A+RQ + NL+ A+ T GG+V I AG +
Sbjct: 358 QKRDIRMIEVVEPSLPRIWADERAVRQVILNLLTNAIKFTPQGGQVTIKVGWTSAGGQYI 417
Query: 528 VIDDDGPDM 536
I D+GP +
Sbjct: 418 AIKDNGPGI 426
>gi|393724369|ref|ZP_10344296.1| multi-sensor hybrid histidine kinase [Sphingomonas sp. PAMC 26605]
Length = 837
Score = 39.3 bits (90), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
L Q +SNL+ AL T GG V I G ALV +DDDGP +
Sbjct: 473 LLQVISNLVSNALRVTATGGVVAIRVTQTDDGKALVAVDDDGPGI 517
>gi|444305833|ref|ZP_21141610.1| multi-sensor signal transduction histidine kinase [Arthrobacter sp.
SJCon]
gi|443481887|gb|ELT44805.1| multi-sensor signal transduction histidine kinase [Arthrobacter sp.
SJCon]
Length = 556
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P + L + A+RPLA +Q +E+ + + + +E L+Q +NL+ A+ T
Sbjct: 395 PVRLGQTLDLVAAALRPLAKLQNVTIEVDPVPEDPEILADEVQLQQVFTNLVSNAIKFTP 454
Query: 509 VGGKVEIVSAAAPAGD----ALVVIDDDG 533
GG++E+ S + A D A V + D G
Sbjct: 455 SGGRIEVGSESHAAEDGTRWATVSVADTG 483
>gi|325275458|ref|ZP_08141388.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas sp. TJI-51]
gi|324099409|gb|EGB97325.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas sp. TJI-51]
Length = 459
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL-RQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ +++ + EP L + LSNL+
Sbjct: 313 IAEGGAQRLDLSQLARELGMAMAPLAH--KRGVALALEAEAPVWLKGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTPQGGNV-IIRVLAP---AVLEVEDDGPGI 402
>gi|160900344|ref|YP_001565926.1| PAS/PAC sensor signal transduction histidine kinase [Delftia
acidovorans SPH-1]
gi|333913582|ref|YP_004487314.1| PAS/PAC sensor signal transduction histidine kinase [Delftia sp.
Cs1-4]
gi|160365928|gb|ABX37541.1| PAS/PAC sensor signal transduction histidine kinase [Delftia
acidovorans SPH-1]
gi|333743782|gb|AEF88959.1| PAS/PAC sensor signal transduction histidine kinase [Delftia sp.
Cs1-4]
Length = 464
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 479 LSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMH 537
L+Q+ VA L+ A SNL+ A+ T GG++E+ + P G A + D GP +
Sbjct: 323 LAQAGEVAGASAELQSAFSNLLANAMRYTPAGGRIEVTWESLPDGSARFAVQDSGPGIE 381
>gi|423695845|ref|ZP_17670335.1| sensor histidine kinase [Pseudomonas fluorescens Q8r1-96]
gi|388009640|gb|EIK70891.1| sensor histidine kinase [Pseudomonas fluorescens Q8r1-96]
Length = 463
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAHA--RGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPSGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|386399068|ref|ZP_10083846.1| histidine kinase,Response regulator receiver domain
protein,histidine kinase [Bradyrhizobium sp. WSM1253]
gi|385739694|gb|EIG59890.1| histidine kinase,Response regulator receiver domain
protein,histidine kinase [Bradyrhizobium sp. WSM1253]
Length = 581
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +V+ ++ ++ EA +PLA +Q+ + ++ +++ + +R+A+ NLI A+ +
Sbjct: 429 PVDVAALVKEVAEANQPLAVNKQQAISVTA-PVNIVTMCDTDRIREAIDNLISNAIKYSP 487
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+GGK+ ++ + GD +V + D+G +
Sbjct: 488 IGGKIGVI-VSHEGGDTIVRVSDEGAGL 514
>gi|256810598|ref|YP_003127967.1| integral membrane sensor signal transduction histidine kinase
[Methanocaldococcus fervens AG86]
gi|256793798|gb|ACV24467.1| integral membrane sensor signal transduction histidine kinase
[Methanocaldococcus fervens AG86]
Length = 632
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALM 505
I+ + D++ D+ ++ P ++++ +E+ E+ ++L V++ + Q L NLIE A+
Sbjct: 483 IKDVKIKDMVVDVLNSLGP--QIKEKNIEIKCEIEENLTAKVDKDRITQVLINLIENAIK 540
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGP 534
+ V G +EI A A ++I D GP
Sbjct: 541 FSPVKGVIEI-HAFRDNNYAHIIIKDYGP 568
>gi|161523861|ref|YP_001578873.1| integral membrane sensor signal transduction histidine kinase
[Burkholderia multivorans ATCC 17616]
gi|189351378|ref|YP_001947006.1| OmpR family two-component system sensor histidine kinase
[Burkholderia multivorans ATCC 17616]
gi|221200186|ref|ZP_03573229.1| periplasmic sensor signal transduction histidine kinase
[Burkholderia multivorans CGD2M]
gi|221206661|ref|ZP_03579673.1| periplasmic sensor signal transduction histidine kinase
[Burkholderia multivorans CGD2]
gi|421477153|ref|ZP_15924999.1| GHKL domain protein [Burkholderia multivorans CF2]
gi|160341290|gb|ABX14376.1| integral membrane sensor signal transduction histidine kinase
[Burkholderia multivorans ATCC 17616]
gi|189335400|dbj|BAG44470.1| OmpR family two-component system sensor histidine kinase
[Burkholderia multivorans ATCC 17616]
gi|221173316|gb|EEE05751.1| periplasmic sensor signal transduction histidine kinase
[Burkholderia multivorans CGD2]
gi|221180425|gb|EEE12829.1| periplasmic sensor signal transduction histidine kinase
[Burkholderia multivorans CGD2M]
gi|400227021|gb|EJO57045.1| GHKL domain protein [Burkholderia multivorans CF2]
Length = 448
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRT 507
P ++ +L + A PLA Q+R ++L E +++ V + ALR NL++ A+ T
Sbjct: 285 PVDLQTLLAECVAAHAPLA--QRRNIDLGFEETRAATVVADVGALRVMFGNLLDNAVKYT 342
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
GG++++ AG A V I D GP +
Sbjct: 343 PDGGRIDVSLTRDAAGRACVQIGDSGPGI 371
>gi|226946941|ref|YP_002802014.1| sensory histidine protein kinase TctE [Azotobacter vinelandii DJ]
gi|226721868|gb|ACO81039.1| sensory histidine protein kinase TctE [Azotobacter vinelandii DJ]
Length = 474
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G P + + +L A+ PLAH R V L+ E + V E L + LSNL+
Sbjct: 320 IAEGGAEPVELGSLCRELGLALAPLAHA--RGVALAFEGPGEVWVTGEPTQLNELLSNLV 377
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V + AAP A++ ++DDGP +
Sbjct: 378 DNALAHTPPGGNVTL-RVAAP---AVLEVEDDGPGI 409
>gi|410661929|ref|YP_006914300.1| Signal transduction histidine kinase nitrogen specific-like protein
[Dehalobacter sp. CF]
gi|409024285|gb|AFV06315.1| Signal transduction histidine kinase nitrogen specific-like protein
[Dehalobacter sp. CF]
Length = 601
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 410 SGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHM 469
S +KL+ L + + E+ L++A + +G + N+++V+ L+ ++ A+
Sbjct: 421 SDSKLKTEYMDLMITEIDRANEILTDFLSVAKVSPDGTKEENINNVINRLYPMLQADAYN 480
Query: 470 QQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVI 529
+++ L EL+ + + E +RQ + NL+ AL T GKV I + A G L +
Sbjct: 481 SGKELIL-ELNDVPSINLNESEIRQLILNLVRNALEETAEKGKVYIKTYQAEEGIVLAIK 539
Query: 530 D 530
D
Sbjct: 540 D 540
>gi|395648298|ref|ZP_10436148.1| putative two-component system sensor kinase [Pseudomonas
extremaustralis 14-3 substr. 14-3b]
Length = 461
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E Q + + E L + LSNL+
Sbjct: 313 IAEGGAQRLDLSQLARELGMAMAPLAHA--RGVALALEADQPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ P A++ ++DDGP +
Sbjct: 371 DNALAHTPSGGNV-ILRVTTP---AVLEVEDDGPGI 402
>gi|410658941|ref|YP_006911312.1| Signal transduction histidine kinase nitrogen specific-like protein
[Dehalobacter sp. DCA]
gi|409021296|gb|AFV03327.1| Signal transduction histidine kinase nitrogen specific-like protein
[Dehalobacter sp. DCA]
Length = 601
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 410 SGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHM 469
S +KL+ L + + E+ L++A + +G + N+++V+ L+ ++ A+
Sbjct: 421 SDSKLKTEYMDLMITEIDRANEILTDFLSVAKVSPDGTKEENINNVINRLYPMLQADAYN 480
Query: 470 QQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVI 529
+++ L EL+ + + E +RQ + NL+ AL T GKV I + A G L +
Sbjct: 481 SGKELIL-ELNDVPSINLNESEIRQLILNLVRNALEETAEKGKVYIKTYQAEEGIVLAIK 539
Query: 530 D 530
D
Sbjct: 540 D 540
>gi|398983801|ref|ZP_10690230.1| signal transduction histidine kinase [Pseudomonas sp. GM24]
gi|399012568|ref|ZP_10714888.1| signal transduction histidine kinase [Pseudomonas sp. GM16]
gi|398115401|gb|EJM05185.1| signal transduction histidine kinase [Pseudomonas sp. GM16]
gi|398156637|gb|EJM45052.1| signal transduction histidine kinase [Pseudomonas sp. GM24]
Length = 461
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAH--KRGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVTAP---AVLEVEDDGPGI 402
>gi|357633482|ref|ZP_09131360.1| integral membrane sensor signal transduction histidine kinase
[Desulfovibrio sp. FW1012B]
gi|357582036|gb|EHJ47369.1| integral membrane sensor signal transduction histidine kinase
[Desulfovibrio sp. FW1012B]
Length = 457
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 444 QNGIRPCNVSDV-----LGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSN 498
++G R + +DV GD+ E PLA + ++ L+ + V L QAL+N
Sbjct: 300 ESGARRQDFTDVDLTGLAGDVAELYEPLAEEKDLAFHVA-LAPGVTVPGNRHLLSQALAN 358
Query: 499 LIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM---HYMVIIANFAAYSPPHPTP 555
L++ A+ T GG + + A G L V D GP + H V++ FA TP
Sbjct: 359 LLDNAVKYTPAGGAITVTLGAPSTGPELAVA-DTGPGIPAEHRHVVLERFARLESSRNTP 417
>gi|225870858|ref|YP_002746805.1| alkaline phosphatase synthesis sensor protein [Streptococcus equi
subsp. equi 4047]
gi|225700262|emb|CAW94499.1| putative alkaline phosphatase synthesis sensor protein
[Streptococcus equi subsp. equi 4047]
Length = 441
Score = 39.3 bits (90), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 461 EAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAA 519
+++RP ++Q+Q+ELS L S++V ++ L Q + NL+ A+ T GG++++ S
Sbjct: 302 QSMRP--QLEQKQLELSYALEDSIVVTSDQYLLSQIMLNLLSNAIQYTDNGGRIQLSSQR 359
Query: 520 APAGDALVVID 530
G A+ V D
Sbjct: 360 VAGGVAITVAD 370
>gi|398886955|ref|ZP_10641789.1| signal transduction histidine kinase [Pseudomonas sp. GM60]
gi|398186601|gb|EJM73971.1| signal transduction histidine kinase [Pseudomonas sp. GM60]
Length = 461
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAHA--RGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|378949339|ref|YP_005206827.1| protein TctE [Pseudomonas fluorescens F113]
gi|359759353|gb|AEV61432.1| TctE [Pseudomonas fluorescens F113]
Length = 463
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAHA--RGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPSGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|255654717|ref|ZP_05400126.1| two-component sensor histidine kinase [Clostridium difficile
QCD-23m63]
gi|296449460|ref|ZP_06891240.1| two component sensor histidine kinase [Clostridium difficile NAP08]
gi|296878217|ref|ZP_06902229.1| two component sensor histidine kinase [Clostridium difficile NAP07]
gi|296261699|gb|EFH08514.1| two component sensor histidine kinase [Clostridium difficile NAP08]
gi|296430786|gb|EFH16621.1| two component sensor histidine kinase [Clostridium difficile NAP07]
Length = 468
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+EL L++ ++V ++ L++A+SNLI+ ++ Q G ++++S + ++++DDG
Sbjct: 344 IELDILNEDIIVDADKKLLKRAISNLIQNSITHNQQGCNIKVIS-KSDLDFCYIIVEDDG 402
Query: 534 PDM 536
M
Sbjct: 403 KGM 405
>gi|150388384|ref|YP_001318433.1| integral membrane sensor signal transduction histidine kinase
[Alkaliphilus metalliredigens QYMF]
gi|149948246|gb|ABR46774.1| integral membrane sensor signal transduction histidine kinase
[Alkaliphilus metalliredigens QYMF]
Length = 463
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSE-LSQSLLVAVEEPALRQALSNLIEGALM 505
+ P N+ +++ +F ++ H+Q++++ + + L +++ V++ RQ L NL++ A+
Sbjct: 316 VSPNNIGNLVDGVFLQMK--FHLQEKKIRVEKRLDTTIIAEVDQERFRQVLINLLDNAIR 373
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
GK+E+ + + ++ I D GP +
Sbjct: 374 HMPENGKIEVCLEKSLDKNFILEIHDSGPGI 404
>gi|434388986|ref|YP_007099597.1| histidine kinase [Chamaesiphon minutus PCC 6605]
gi|428019976|gb|AFY96070.1| histidine kinase [Chamaesiphon minutus PCC 6605]
Length = 467
Score = 38.9 bits (89), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 85/210 (40%), Gaps = 46/210 (21%)
Query: 322 PLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEE 381
PL++I+T K+L ++ E I+ + DRL+ L L++A+ L +
Sbjct: 213 PLTAIRTFGKLLIKRLQLGETDGGFANSIVRESDRLQELLIHLENAIDLPLIKDEDSKSD 272
Query: 382 TLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAP 441
+K + +S Q N S N + +P A
Sbjct: 273 WIKPLPSS----------QQEANVSNAN----------------------LLLPDAAFR- 299
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNL 499
+ C ++DVL L + +A Q R + + + + L LV ALR+ LSNL
Sbjct: 300 -----VESCQLTDVLDPLITSAEAIA--QDRNLTFYTHIPRDLPLVQAHPAALREVLSNL 352
Query: 500 IEGALMRTQVGGK----VEIVSAAAPAGDA 525
I+ AL T GG+ VE+V+ A DA
Sbjct: 353 IDNALKYTPTGGEVDVDVELVATAIDLADA 382
>gi|424892203|ref|ZP_18315783.1| signal transduction histidine kinase [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|424893569|ref|ZP_18317149.1| signal transduction histidine kinase [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393183484|gb|EJC83521.1| signal transduction histidine kinase [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393184850|gb|EJC84887.1| signal transduction histidine kinase [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 468
Score = 38.9 bits (89), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 458 DLFEAVRPL--AHMQQ---RQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
DL +A R + AH ++ R ++L E+S+ + V + LR+ L NLI+ A+ T+ G
Sbjct: 323 DLSKAAREILEAHAEEALRRNIDLGLEVSRPVFVEGDGTMLREMLVNLIDNAIRYTRADG 382
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDM 536
+V + A G A++ ++D+GP +
Sbjct: 383 RVTVAVGQAD-GRAVITVEDNGPGI 406
>gi|330808063|ref|YP_004352525.1| histidine kinase, Classic [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327376171|gb|AEA67521.1| putative Histidine kinase, Classic [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 463
Score = 38.9 bits (89), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAHA--RGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPSGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|195978473|ref|YP_002123717.1| alkaline phosphatase synthesis sensor protein PhoR [Streptococcus
equi subsp. zooepidemicus MGCS10565]
gi|195975178|gb|ACG62704.1| alkaline phosphatase synthesis sensor protein PhoR [Streptococcus
equi subsp. zooepidemicus MGCS10565]
Length = 432
Score = 38.9 bits (89), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 461 EAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAA 519
+++RP ++Q+Q+ELS L S++V ++ L Q + NL+ A+ T GG++++ S
Sbjct: 293 QSMRP--QLEQKQLELSYALEDSIVVTSDQYLLSQIMLNLLSNAIQYTDNGGRIQLSSQR 350
Query: 520 APAGDALVVID 530
G A+ V D
Sbjct: 351 VAGGVAITVAD 361
>gi|163856323|ref|YP_001630621.1| sensor histidine kinase [Bordetella petrii DSM 12804]
gi|163260051|emb|CAP42352.1| sensor histidine kinase [Bordetella petrii]
Length = 411
Score = 38.9 bits (89), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 496 LSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGP 534
+ NL++ A+ T VGG +E+ A AP G AL+ + DDGP
Sbjct: 310 VGNLMDNAVRYTPVGGNIEVRCAPAPDGGALLSVADDGP 348
>gi|398875291|ref|ZP_10630468.1| signal transduction histidine kinase [Pseudomonas sp. GM67]
gi|398207946|gb|EJM94687.1| signal transduction histidine kinase [Pseudomonas sp. GM67]
Length = 462
Score = 38.9 bits (89), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAHA--RGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|225868205|ref|YP_002744153.1| alkaline phosphatase synthesis sensor protein [Streptococcus equi
subsp. zooepidemicus]
gi|225701481|emb|CAW98633.1| putative alkaline phosphatase synthesis sensor protein
[Streptococcus equi subsp. zooepidemicus]
Length = 441
Score = 38.9 bits (89), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 461 EAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAA 519
+++RP ++Q+Q+ELS L S++V ++ L Q + NL+ A+ T GG++++ S
Sbjct: 302 QSMRP--QLEQKQLELSYALEDSIVVTSDQYLLSQIMLNLLSNAIQYTDNGGRIQLSSQR 359
Query: 520 APAGDALVVID 530
G A+ V D
Sbjct: 360 VAGGVAITVAD 370
>gi|408483142|ref|ZP_11189361.1| putative two-component system sensor kinase [Pseudomonas sp. R81]
Length = 461
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAH--ARGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTSPGGNV-ILRVTAP---AVLEVEDDGPGI 402
>gi|134291092|ref|YP_001114861.1| response regulator receiver sensor signal transduction histidine
kinase [Burkholderia vietnamiensis G4]
gi|134134281|gb|ABO58606.1| response regulator receiver sensor signal transduction histidine
kinase [Burkholderia vietnamiensis G4]
Length = 386
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 440 APLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL-RQALSN 498
A ++++G +V +L D E +P+A ++ + L S++ ++A +P L QA+ N
Sbjct: 229 AGVRRSGFVKSDVVTILSDAVEFYQPVAELRGISLTLLLCSETEVLAEVDPLLLAQAIGN 288
Query: 499 LIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHY 538
LI+ AL Q G+VE VS V + DDGP + +
Sbjct: 289 LIDNALKYAQDNGEVE-VSLCERDDRIEVTVSDDGPGIPF 327
>gi|163761562|ref|ZP_02168634.1| probable phosphate regulon sensor histidine kinase transmembrane
protein [Hoeflea phototrophica DFL-43]
gi|162281276|gb|EDQ31575.1| probable phosphate regulon sensor histidine kinase transmembrane
protein [Hoeflea phototrophica DFL-43]
Length = 435
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI 515
+G + + +RP+A+ ++ L+ + + V + L Q SNLIE A Q G +VEI
Sbjct: 279 VGHVIDTLRPMANELGVEIALTAPEEPVQVVGDVDELIQVFSNLIENACKYGQTGKRVEI 338
Query: 516 VSAAAPAGDALVVIDDDGPDM 536
+ + G A V + D GP +
Sbjct: 339 SVSGSEPGGAQVSVRDFGPGI 359
>gi|317051728|ref|YP_004112844.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
indicum S5]
gi|316946812|gb|ADU66288.1| ATP-binding region ATPase domain protein [Desulfurispirillum
indicum S5]
Length = 619
Score = 38.9 bits (89), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
NV +LGD E P+A QQ+ ++L E+ + L V ++E Q L NLI A+ T
Sbjct: 474 NVVPLLGDCLEDFHPMA--QQKHIQLHLEVPKKLYVCIDELRFLQVLQNLISNAIKFTDS 531
Query: 510 GGKVEIVSAAAPAGDALVVIDDDG 533
G V A+ G +V + D G
Sbjct: 532 GSVN--VRASDETGRVVVEVADTG 553
>gi|429887473|ref|ZP_19368990.1| putative two-component system sensor histidine kinase (Pho family)
[Vibrio cholerae PS15]
gi|429225464|gb|EKY31714.1| putative two-component system sensor histidine kinase (Pho family)
[Vibrio cholerae PS15]
Length = 465
Score = 38.9 bits (89), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P N+S+V+ ++ +A ++ ++E +++S L++ + L Q L NL++ A+ T+
Sbjct: 315 PTNLSEVVHNVASWYEDVAEEKEIKLE-TQVSDGLIIVSDPDKLVQVLVNLVDNAIKYTE 373
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDG----PDMHYMV 540
G V I + GDA++ + D G P H +V
Sbjct: 374 PKGYVLIKAERVTDGDAVIQVTDTGIGIDPKYHDLV 409
>gi|398941905|ref|ZP_10669998.1| signal transduction histidine kinase [Pseudomonas sp. GM41(2012)]
gi|398161270|gb|EJM49506.1| signal transduction histidine kinase [Pseudomonas sp. GM41(2012)]
Length = 461
Score = 38.9 bits (89), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAHA--RGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTPSGGNV-ILRVTAP---AVLEVEDDGPGI 402
>gi|206561167|ref|YP_002231932.1| two-component regulatory system, sensor kinase protein
[Burkholderia cenocepacia J2315]
gi|198037209|emb|CAR53130.1| two-component regulatory system, sensor kinase protein
[Burkholderia cenocepacia J2315]
Length = 448
Score = 38.9 bits (89), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 437 LALAPLKQNGI---RPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPAL 492
LALA + +G P ++ +L + A PLA Q+R ++L E +++ V + AL
Sbjct: 270 LALARAEPDGATMREPVDLQALLAECVAAHAPLA--QRRDIDLGFEETRAASVVADVGAL 327
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
R NL++ A+ T GG++++ AG A V I D GP +
Sbjct: 328 RVMFGNLLDNAVKYTPDGGRIDVSLTRDAAGRACVQIGDSGPGI 371
>gi|325107600|ref|YP_004268668.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
5305]
gi|324967868|gb|ADY58646.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
5305]
Length = 1074
Score = 38.9 bits (89), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P ++ ++ +AVRP+A Q +++ +S Q ++V + + QAL NL+ A T+
Sbjct: 784 PVDLVQLIEQSLDAVRPVARQQNQELAVSLPKQPVIVHADSVRIMQALENLLNNACKYTE 843
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM 536
GG++E+ A+V + D+G M
Sbjct: 844 EGGRIEL-RLTIQGVLAMVEVQDNGIGM 870
>gi|428299234|ref|YP_007137540.1| integral membrane sensor signal transduction histidine kinase
[Calothrix sp. PCC 6303]
gi|428235778|gb|AFZ01568.1| integral membrane sensor signal transduction histidine kinase
[Calothrix sp. PCC 6303]
Length = 455
Score = 38.9 bits (89), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
C ++D++ DL E LA+ Q+ S E SQ L V +E + + SNLI A+ T
Sbjct: 303 CCLNDLINDLLEEFSDLANNTDLQLTSSLEYSQPLHVLGDEDQILRLFSNLIANAIQYTP 362
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDG 533
GG V V+ DA+V + D G
Sbjct: 363 AGGYVN-VTLKRNNDDAVVEVRDTG 386
>gi|387905967|ref|YP_006336304.1| response regulator receiver sensor signal transduction histidine
kinase [Burkholderia sp. KJ006]
gi|387580859|gb|AFJ89573.1| response regulator receiver sensor signal transduction histidine
kinase [Burkholderia sp. KJ006]
Length = 386
Score = 38.9 bits (89), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 440 APLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL-RQALSN 498
A ++++G +V +L D E +P+A ++ + L S++ ++A +P L QA+ N
Sbjct: 229 AGVRRSGFVKSDVVTILSDAVEFYQPVAELRGISLTLLLCSETEVLAEVDPLLLAQAIGN 288
Query: 499 LIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHY 538
LI+ AL Q G+VE VS V + DDGP + +
Sbjct: 289 LIDNALKYAQDNGEVE-VSLCERDDRIEVTVSDDGPGIPF 327
>gi|421868427|ref|ZP_16300075.1| Sensory histidine kinase QseC [Burkholderia cenocepacia H111]
gi|444370717|ref|ZP_21170355.1| GHKL domain protein [Burkholderia cenocepacia K56-2Valvano]
gi|358071449|emb|CCE50953.1| Sensory histidine kinase QseC [Burkholderia cenocepacia H111]
gi|443596941|gb|ELT65403.1| GHKL domain protein [Burkholderia cenocepacia K56-2Valvano]
Length = 448
Score = 38.9 bits (89), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 437 LALAPLKQNGI---RPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPAL 492
LALA + +G P ++ +L + A PLA Q+R ++L E +++ V + AL
Sbjct: 270 LALARAEPDGATMREPVDLQALLAECVAAHAPLA--QRRDIDLGFEETRAASVVADVGAL 327
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
R NL++ A+ T GG++++ AG A V I D GP +
Sbjct: 328 RVMFGNLLDNAVKYTPDGGRIDVSLTRDAAGRACVQIGDSGPGI 371
>gi|427714285|ref|YP_007062909.1| signal transduction histidine kinase [Synechococcus sp. PCC 6312]
gi|427378414|gb|AFY62366.1| signal transduction histidine kinase [Synechococcus sp. PCC 6312]
Length = 431
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 110/261 (42%), Gaps = 65/261 (24%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSW----QNNARMSNLVEQIRGPLSSIQTLSKMLSLHMK 338
+ +LA+ VMDQ+ L Q+ Q + NL+ Q R PL ++QTL+K+L ++
Sbjct: 155 QVANTLAIGCVMDQRHQWLSQAQAPTLAQQQDVLGNLLHQFRNPLMALQTLTKLLLKRLQ 214
Query: 339 RSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIR 398
+ + IVE I +G RL+ +++ Q
Sbjct: 215 APDKNRPIVESIWQEGQRLQSLVEQFQ--------------------------------- 241
Query: 399 SQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGD 458
L+ S PL+ T A L+LAP N +RP ++ +
Sbjct: 242 -------------ATLEASPHPLAPVTTAS--------LSLAPAALN-LRPTDLVGTIQP 279
Query: 459 LFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEP-ALRQALSNLIEGALMRTQVGGKVEI- 515
L AV+ A + ++ L E + L A+ +P AL+ + NL++ A T +GG++ +
Sbjct: 280 LLTAVQ--ARASESEITLKVEWAPQLPPALIDPIALQDIVGNLLDNACKYTSLGGEIHLQ 337
Query: 516 VSAAAPAGDALVVIDDDGPDM 536
+P L+++ D GP +
Sbjct: 338 TRLLSPTTQGLLIV-DTGPGI 357
>gi|291288471|ref|YP_003505287.1| integral membrane sensor signal transduction histidine kinase
[Denitrovibrio acetiphilus DSM 12809]
gi|290885631|gb|ADD69331.1| integral membrane sensor signal transduction histidine kinase
[Denitrovibrio acetiphilus DSM 12809]
Length = 460
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 417 SCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL 476
+C+ +D + + MP +Q +R N+ ++L E ++PLA+ + ++
Sbjct: 291 ACEVNKIDHIMQSLFADMP-------EQLEVRIANIQNILSLTLEELKPLANAKSIKIHF 343
Query: 477 SELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDD-DGPD 535
E +LV ++ LSNL++ AL G + I + G ++ + DD DG D
Sbjct: 344 IEKENIVLVKCYPILIQLMLSNLLDNALEAIGTFGNIYIEVETSEDGTSIEICDDGDGID 403
>gi|402825046|ref|ZP_10874369.1| integral membrane sensor signal transduction histidine kinase
[Sphingomonas sp. LH128]
gi|402261432|gb|EJU11472.1| integral membrane sensor signal transduction histidine kinase
[Sphingomonas sp. LH128]
Length = 454
Score = 38.9 bits (89), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 443 KQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEG 502
++ G R +++++ ++ E V+P+A + ++V + ++ LV + L Q L N++E
Sbjct: 296 RRAGFRRFDLAELATEIVEMVQPVAQERGQRVLMERADEAKLVG-DRQLLSQLLVNMLEN 354
Query: 503 ALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
A+ T G ++ VS A A ++V+ DDGP +
Sbjct: 355 AVRHTPSGTRIR-VSIAREAQAVVLVVTDDGPGI 387
>gi|167033577|ref|YP_001668808.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida GB-1]
gi|166860065|gb|ABY98472.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida GB-1]
Length = 421
Score = 38.9 bits (89), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+V ++L + E R A M+Q QV L + + L+ E L + N+I A+ T VG
Sbjct: 273 DVVELLAQIVEDARFEAGMKQCQVSL-QAQGAFLIHGHEELLYRGFENIIRNAVRYTAVG 331
Query: 511 GKVEIVSAAAPAGDAL-VVIDDDGPDM 536
+V + +A AP G V + D GP +
Sbjct: 332 TEVLVEAAMAPGGQWFQVCVSDHGPGV 358
>gi|222528132|ref|YP_002572014.1| PAS/PAC sensor signal transduction histidine kinase
[Caldicellulosiruptor bescii DSM 6725]
gi|312621185|ref|YP_004022798.1| multi-sensor signal transduction histidine kinase
[Caldicellulosiruptor kronotskyensis 2002]
gi|222454979|gb|ACM59241.1| PAS/PAC sensor signal transduction histidine kinase
[Caldicellulosiruptor bescii DSM 6725]
gi|312201652|gb|ADQ44979.1| multi-sensor signal transduction histidine kinase
[Caldicellulosiruptor kronotskyensis 2002]
Length = 571
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
I N+S+++ + E +R A+ ++ Q L + + +++ + L Q L NLI A+
Sbjct: 414 IEEVNISELVRFVCEKMRIHAN-KKHQSLLCNVQEDIIIDADRDRLEQVLINLINNAITY 472
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGP 534
Q GG++E V G+ + ++D+GP
Sbjct: 473 VQDGGRIE-VCLKKENGNIELTVEDNGP 499
>gi|222527313|ref|YP_002571784.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
gi|222451192|gb|ACM55458.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
Length = 1209
Score = 38.9 bits (89), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+P + +++ EA R +EL+ + V V+ + Q ++NLI A+
Sbjct: 790 FQPVVLDELVRQTIEANRGFGQQYDVAIELTATLPGVQVYVDPDRIAQVITNLISNAIKF 849
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ GGKVE+ P G + + D GP +
Sbjct: 850 SPPGGKVEVAIGREPRGRIRITVTDHGPGI 879
>gi|163849319|ref|YP_001637363.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
gi|163670608|gb|ABY36974.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
Length = 1209
Score = 38.9 bits (89), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+P + +++ EA R +EL+ + V V+ + Q ++NLI A+
Sbjct: 790 FQPVVLDELVRQTIEANRGFGQQYDVAIELTATLPGVQVYVDPDRIAQVITNLISNAIKF 849
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ GGKVE+ P G + + D GP +
Sbjct: 850 SPPGGKVEVAIGREPRGRIRITVTDHGPGI 879
>gi|157369750|ref|YP_001477739.1| integral membrane sensor signal transduction histidine kinase
[Serratia proteamaculans 568]
gi|157321514|gb|ABV40611.1| integral membrane sensor signal transduction histidine kinase
[Serratia proteamaculans 568]
Length = 488
Score = 38.9 bits (89), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMRT 507
P ++S+++ D+F+ A +Q+++ L++++ + LV + + + L+NL++ A+ T
Sbjct: 342 PFSLSELVQDVFQKFELAAEARQQRL-LADITPGIPLVFADVSMIERVLTNLLDNAIRHT 400
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
GG++E V AG LV ++D GP +
Sbjct: 401 PQGGEIE-VRLWQQAGKVLVQVNDSGPGI 428
>gi|73538366|ref|YP_298733.1| response regulator receiver ATP-binding protein [Ralstonia eutropha
JMP134]
gi|72121703|gb|AAZ63889.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A, N-terminal [Ralstonia
eutropha JMP134]
Length = 1152
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
I ++ + D E RPLA +R+V L ++S+ + + L Q + NL+ A
Sbjct: 855 IERVDLQAAIRDAIETCRPLAEELEREVTLDVPAESIWLDADPVRLAQVIGNLLSNAYKY 914
Query: 507 TQVGGKVEIVSAAAPAGD-ALVVIDDDG 533
T+ GG V + + P GD L+ + DDG
Sbjct: 915 TEHGGHVWL--SVEPRGDEVLLRVKDDG 940
>gi|398824145|ref|ZP_10582488.1| histidine kinase, partial [Bradyrhizobium sp. YR681]
gi|398225169|gb|EJN11448.1| histidine kinase, partial [Bradyrhizobium sp. YR681]
Length = 356
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +V+ ++ ++ EA +PLA +Q+ + L+ S +++ + +R+A+ NLI A+ +
Sbjct: 204 PVDVAALVKEVAEANQPLAVNKQQTISLATPS-NIVTMCDTDRIREAIDNLISNAIKYSP 262
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+GG++ V+ + D +V + D+G +
Sbjct: 263 IGGRIG-VAVSHEGSDTIVRVSDEGAGL 289
>gi|440742181|ref|ZP_20921510.1| sensor histidine kinase [Pseudomonas syringae BRIP39023]
gi|440378004|gb|ELQ14638.1| sensor histidine kinase [Pseudomonas syringae BRIP39023]
Length = 460
Score = 38.5 bits (88), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNLI
Sbjct: 312 IAEGGAQQLDLSQLARELGMAMAPLAH--SRGVALALEADEPVWLRGEPTLLNELLSNLI 369
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V ++ AP ++ ++DDGP +
Sbjct: 370 DNALAHTSPGGNV-VLRVYAP---GVLEVEDDGPGI 401
>gi|90421623|ref|YP_529993.1| response regulator receiver sensor signal transduction histidine
kinase [Rhodopseudomonas palustris BisB18]
gi|90103637|gb|ABD85674.1| response regulator receiver sensor signal transduction histidine
kinase [Rhodopseudomonas palustris BisB18]
Length = 582
Score = 38.5 bits (88), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P ++S ++ ++ EA RPLA +Q+++ +S Q + + +R+A+ NL+ A+ +
Sbjct: 429 PVDISALVTEVAEANRPLALNKQQEITVSA-PQDQVTVCDSDRIREAIDNLVSNAIKYSP 487
Query: 509 VGGKVEIVSAAAPAGDALVV-IDDDGPDM 536
VGGK+ ++ +GD V+ + D G +
Sbjct: 488 VGGKIALI--VDRSGDNTVIRVTDQGAGL 514
>gi|66047191|ref|YP_237032.1| sensor histidine kinase [Pseudomonas syringae pv. syringae B728a]
gi|63257898|gb|AAY38994.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
region:Histidine kinase A, N-terminal [Pseudomonas
syringae pv. syringae B728a]
Length = 460
Score = 38.5 bits (88), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNLI
Sbjct: 312 IAEGGAQQLDLSQLARELGMAMAPLAH--SRGVALALEADEPVWLRGEPTLLNELLSNLI 369
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V ++ AP ++ ++DDGP +
Sbjct: 370 DNALAHTSPGGNV-VLRVYAP---GVLEVEDDGPGI 401
>gi|398925878|ref|ZP_10662117.1| signal transduction histidine kinase [Pseudomonas sp. GM48]
gi|398171472|gb|EJM59374.1| signal transduction histidine kinase [Pseudomonas sp. GM48]
Length = 462
Score = 38.5 bits (88), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH +R + L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAH--KRGIALALEAEEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V ++ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-VLRVSAP---AVLEVEDDGPGI 402
>gi|421529364|ref|ZP_15975901.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida S11]
gi|402213202|gb|EJT84562.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida S11]
Length = 329
Score = 38.5 bits (88), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL-RQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ +++ + EP L + LSNL+
Sbjct: 183 IAEGGAQRLDLSQLARELGMAMAPLAH--KRGVALALEAEAPVWLKGEPTLLNELLSNLV 240
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 241 DNALAHTPAGGNV-ILRVLAP---AVLEVEDDGPGI 272
>gi|350545657|ref|ZP_08915124.1| Signal transduction histidine kinase [Candidatus Burkholderia
kirkii UZHbot1]
gi|350526566|emb|CCD40136.1| Signal transduction histidine kinase [Candidatus Burkholderia
kirkii UZHbot1]
Length = 457
Score = 38.5 bits (88), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 470 QQRQVEL-SELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVV 528
Q+R+++L +EL+ S + E L + N+ E A+ TQ GG V V+ A AG +
Sbjct: 330 QKREIDLGAELADSAWIIGHEALLSALVYNMAENAIRYTQQGGHV-TVAVARDAGRVTLT 388
Query: 529 IDDDGPDM 536
+ DDGP +
Sbjct: 389 VTDDGPGI 396
>gi|255034368|ref|YP_003084989.1| histidine kinase [Dyadobacter fermentans DSM 18053]
gi|254947124|gb|ACT91824.1| histidine kinase [Dyadobacter fermentans DSM 18053]
Length = 1327
Score = 38.5 bits (88), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
+++D+L D+F RP A +Q Q +L +L V+E A ++ SNL+ A+ +
Sbjct: 900 TDINDLLNDVFATFRPAAEQKQLQYKLELPRITLQAFVDEEACKKITSNLVSNAIKYAES 959
Query: 510 GGKVEIVSAAAPAGDALVVID--DDGPDMHY 538
KV++ + + D L I+ +DGP + Y
Sbjct: 960 SVKVKL--SPFNSDDLLFHIEFTNDGPLIGY 988
>gi|172038240|ref|YP_001804741.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
gi|354554407|ref|ZP_08973712.1| GAF sensor signal transduction histidine kinase [Cyanothece sp.
ATCC 51472]
gi|171699694|gb|ACB52675.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
gi|353554086|gb|EHC23477.1| GAF sensor signal transduction histidine kinase [Cyanothece sp.
ATCC 51472]
Length = 430
Score = 38.5 bits (88), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 51/262 (19%), Positives = 106/262 (40%), Gaps = 63/262 (24%)
Query: 267 RMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSW-------------QNNARMS 313
R Y + ++ I +LA+A ++DQ+ W Q R+
Sbjct: 128 RREAYPWKPEEFNQIEKIADTLAIARLLDQRQ------GWYQKQLQLQQRQQQQERDRLD 181
Query: 314 NLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKA 373
+L Q+R PL++++ K+L + + S IV +I+ +G+ L+ ++E + +
Sbjct: 182 DLFHQLRNPLTALKVFGKLLLKRLGTDDQSRSIVNNIVREGEHLQELIKEFESH----QK 237
Query: 374 NIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMP 433
+V +E + +N ++ + P+ + L P++ +E+
Sbjct: 238 GMV--DETDIITLNTNSVAIPDRLSPSLP-----------------------PSQSLELS 272
Query: 434 MPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALR 493
P N+ D+L + + +A + +++ + V + ALR
Sbjct: 273 ---------------PINLWDILETVIMSAESIAENKGIDLQVEKFDHLDAVLGNKSALR 317
Query: 494 QALSNLIEGALMRTQVGGKVEI 515
+ LSNLI+ ++ T GKV I
Sbjct: 318 EVLSNLIDNSIKYTPASGKVRI 339
>gi|374299340|ref|YP_005050979.1| integral membrane sensor signal transduction histidine kinase
[Desulfovibrio africanus str. Walvis Bay]
gi|332552276|gb|EGJ49320.1| integral membrane sensor signal transduction histidine kinase
[Desulfovibrio africanus str. Walvis Bay]
Length = 485
Score = 38.5 bits (88), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALM 505
+ P +V+ VL + AV + +QQ++VEL+ E + +L+ + + +A NL+ AL
Sbjct: 338 LEPVDVTQVLDQM--AVFLESKLQQQEVELAREYAPGVLIMADRDLIYRAFYNLVANALE 395
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDG 533
GK+ I S A AG +V I+D G
Sbjct: 396 ALNGPGKIRI-SVNAAAGQVMVNIEDSG 422
>gi|257486550|ref|ZP_05640591.1| sensor histidine kinase TctE [Pseudomonas syringae pv. tabaci str.
ATCC 11528]
gi|416014887|ref|ZP_11562604.1| sensor histidine kinase TctE [Pseudomonas syringae pv. glycinea
str. B076]
gi|422680688|ref|ZP_16738959.1| sensor histidine kinase TctE [Pseudomonas syringae pv. tabaci str.
ATCC 11528]
gi|320325555|gb|EFW81617.1| sensor histidine kinase TctE [Pseudomonas syringae pv. glycinea
str. B076]
gi|331010033|gb|EGH90089.1| sensor histidine kinase TctE [Pseudomonas syringae pv. tabaci str.
ATCC 11528]
Length = 460
Score = 38.5 bits (88), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNLI
Sbjct: 312 IAEGGAQQLDLSQLARELGMAMAPLAH--SRGVALALEADEPVWLRGEPTLLNELLSNLI 369
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V ++ AP ++ ++DDGP +
Sbjct: 370 DNALAHTSPGGNV-VLRVYAP---GVLEVEDDGPGI 401
>gi|422598772|ref|ZP_16673028.1| sensor histidine kinase TctE [Pseudomonas syringae pv. lachrymans
str. M301315]
gi|330989045|gb|EGH87148.1| sensor histidine kinase TctE [Pseudomonas syringae pv. lachrymans
str. M301315]
Length = 460
Score = 38.5 bits (88), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNLI
Sbjct: 312 IAEGGAQQLDLSQLARELGMAMAPLAH--SRGVALALEADEPVWLRGEPTLLNELLSNLI 369
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V ++ AP ++ ++DDGP +
Sbjct: 370 DNALAHTSPGGNV-VLRVYAP---GVLEVEDDGPGI 401
>gi|302188269|ref|ZP_07264942.1| sensor histidine kinase [Pseudomonas syringae pv. syringae 642]
Length = 460
Score = 38.5 bits (88), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNLI
Sbjct: 312 IAEGGAQQLDLSQLARELGMAMAPLAH--SRGVALALEADEPVWLRGEPTLLNELLSNLI 369
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V ++ AP ++ ++DDGP +
Sbjct: 370 DNALAHTSPGGNV-VLRVYAP---GVLEVEDDGPGI 401
>gi|82703325|ref|YP_412891.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
25196]
gi|82411390|gb|ABB75499.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
25196]
Length = 866
Score = 38.5 bits (88), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
+V VL E RPL Q ++ +S +SLL+ + + Q +SNL+ A T
Sbjct: 571 VDVRAVLDAALELSRPLIKENQHRLFISNPKESLLLDADPTRMTQVVSNLLNNAAKYTSK 630
Query: 510 GGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYS 549
GG++E+ SA + ++ + D+G + ++ F +S
Sbjct: 631 GGQIEL-SAERDGSEVIIRVRDNGVGLTSEALLEVFELFS 669
>gi|404497281|ref|YP_006721387.1| sensor histidine kinase response regulator, HAMP domain-containing,
putative heme-binding site [Geobacter metallireducens
GS-15]
gi|418065827|ref|ZP_12703197.1| multi-sensor hybrid histidine kinase [Geobacter metallireducens
RCH3]
gi|78194884|gb|ABB32651.1| sensor histidine kinase response regulator, HAMP domain-containing,
putative heme-binding site [Geobacter metallireducens
GS-15]
gi|373561625|gb|EHP87856.1| multi-sensor hybrid histidine kinase [Geobacter metallireducens
RCH3]
Length = 827
Score = 38.5 bits (88), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPA--------LRQALSNL 499
R +SD +L V L + + E +S S+LV E P LRQ L+NL
Sbjct: 392 RRLELSDEALELRSFVESLRRLFAVKAERENISLSILVGDEAPQFICGDPARLRQVLTNL 451
Query: 500 IEGALMRTQVGGKVEIVSAAAPA-GDALVVIDDDG 533
+ A+ T GG+V + + A PA G+ L + D G
Sbjct: 452 LSNAIKFTPTGGRVTLAADADPAGGNLLFTVSDTG 486
>gi|416028892|ref|ZP_11571781.1| sensor histidine kinase TctE [Pseudomonas syringae pv. glycinea
str. race 4]
gi|422405035|ref|ZP_16482083.1| sensor histidine kinase TctE [Pseudomonas syringae pv. glycinea
str. race 4]
gi|320327159|gb|EFW83173.1| sensor histidine kinase TctE [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330879270|gb|EGH13419.1| sensor histidine kinase TctE [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 460
Score = 38.5 bits (88), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNLI
Sbjct: 312 IAEGGAQQLDLSQLARELGMAMAPLAH--SRGVALALEADEPVWLRGEPTLLNELLSNLI 369
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V ++ AP ++ ++DDGP +
Sbjct: 370 DNALAHTSPGGNV-VLRVYAP---GVLEVEDDGPGI 401
>gi|319654258|ref|ZP_08008346.1| hypothetical protein HMPREF1013_04966 [Bacillus sp. 2_A_57_CT2]
gi|317393958|gb|EFV74708.1| hypothetical protein HMPREF1013_04966 [Bacillus sp. 2_A_57_CT2]
Length = 543
Score = 38.5 bits (88), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 42/83 (50%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
++D++ + E + P A+M Q +L+ L++ E+ ++Q N+++ A+ + G
Sbjct: 396 KLTDIIENTVELLSPQANMNGIQFKLNFADGDFLISCEKNQIKQVFLNILKNAMEAMEKG 455
Query: 511 GKVEIVSAAAPAGDALVVIDDDG 533
G +EI G+ +V D G
Sbjct: 456 GDIEISLKDNNEGECIVSFQDQG 478
>gi|344943144|ref|ZP_08782431.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
SV96]
gi|344260431|gb|EGW20703.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
SV96]
Length = 872
Score = 38.5 bits (88), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 437 LALAPLKQNGIR----PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL 492
L +A + Q IR ++D++ + E RPL +++++ +S+ + + L
Sbjct: 569 LDMARIMQGKIRLKIEHFELTDIVNNAIETSRPLLESRKQELIISQTMTPQWLEGDHVRL 628
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
Q LSNL+ A T GGK+ ++S DA++ I D G
Sbjct: 629 AQVLSNLLNNAAKYTGEGGKI-MLSVMRKGSDAVIEIKDTG 668
>gi|260778335|ref|ZP_05887228.1| probable two-component system sensor histidine kinase (Pho family)
[Vibrio coralliilyticus ATCC BAA-450]
gi|260606348|gb|EEX32633.1| probable two-component system sensor histidine kinase (Pho family)
[Vibrio coralliilyticus ATCC BAA-450]
Length = 467
Score = 38.5 bits (88), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 443 KQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEP-ALRQALSNLIE 501
+Q NVS+VL + +A +Q++L ++ L+ +P L QAL NL++
Sbjct: 309 RQQQSTSTNVSEVLKTVVSWYEDVA--DDKQIQLQAIADDNLIIQSDPEKLTQALVNLVD 366
Query: 502 GALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
A+ T+ GGKV + + +++ D G
Sbjct: 367 NAIKYTETGGKVSLKADKTSDHHVQILVSDTG 398
>gi|71733767|ref|YP_276097.1| sensor histidine kinase TctE [Pseudomonas syringae pv. phaseolicola
1448A]
gi|71554320|gb|AAZ33531.1| sensor histidine kinase TctE [Pseudomonas syringae pv. phaseolicola
1448A]
Length = 460
Score = 38.5 bits (88), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNLI
Sbjct: 312 IAEGGAQQLDLSQLARELGMAMAPLAH--SRGVALALEADEPVWLRGEPTLLNELLSNLI 369
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V ++ AP ++ ++DDGP +
Sbjct: 370 DNALAHTSPGGNV-VLRVYAP---GVLEVEDDGPGI 401
>gi|340777144|ref|ZP_08697087.1| integral membrane sensor signal transduction histidine kinase
[Acetobacter aceti NBRC 14818]
Length = 457
Score = 38.5 bits (88), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 477 SELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGP 534
+EL + +++ V+ LRQ +SN+++ AL+ T G + VS AG AL+ + D+GP
Sbjct: 331 AELVRHIMIHVDVVLLRQLVSNILDNALLHTPAGTSI-TVSVRKTAGRALLCVADNGP 387
>gi|163859304|ref|YP_001633602.1| sensor histidine kinase TctE [Bordetella petrii DSM 12804]
gi|163263032|emb|CAP45335.1| sensor histidine kinase TctE [Bordetella petrii]
Length = 525
Score = 38.5 bits (88), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 440 APLKQNGIRP--CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVE--EPALRQA 495
APL ++G+ P ++++V + A+ P A + RQ++L + SL V + + LR+A
Sbjct: 354 APLSEDGLAPERVDLAEVAQGVIRALLPAA--RARQIDLGLEASSLPVCIPGVDWLLREA 411
Query: 496 LSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
LSNL++ A+ T +V V A A + ++D+GP M
Sbjct: 412 LSNLVDNAIRYTAPASQV-TVRVYADERYARLTVEDNGPGM 451
>gi|399079030|ref|ZP_10753069.1| signal transduction histidine kinase [Caulobacter sp. AP07]
gi|398032739|gb|EJL26069.1| signal transduction histidine kinase [Caulobacter sp. AP07]
Length = 526
Score = 38.5 bits (88), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 453 SDVLGDLFEAVRPLAHMQQRQVELS-ELSQSL-LVAVEEPALRQALSNLIEGALMRTQVG 510
+ V +L A R +A Q R + ++ +L+ L LVA E + L+ L+E + Q G
Sbjct: 386 AGVASELASAARRVADAQGRDIAVTLDLAADLPLVAAPEATVETVLTTLVENS---RQAG 442
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDM 536
+ + AAA GD ++ + DDGP +
Sbjct: 443 ARTVTIRAAAVGGDVVLRVSDDGPGV 468
>gi|422675299|ref|ZP_16734644.1| sensor histidine kinase [Pseudomonas syringae pv. aceris str.
M302273]
gi|330973018|gb|EGH73084.1| sensor histidine kinase [Pseudomonas syringae pv. aceris str.
M302273]
Length = 460
Score = 38.5 bits (88), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNLI
Sbjct: 312 IAEGGAQQLDLSQLARELGMAMAPLAH--SRGVALALEADEPVWLRGEPTLLNELLSNLI 369
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V ++ AP ++ ++DDGP +
Sbjct: 370 DNALAHTSPGGNV-VLRVYAP---GVLEVEDDGPGI 401
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,148,438,858
Number of Sequences: 23463169
Number of extensions: 322551689
Number of successful extensions: 1063297
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 777
Number of HSP's that attempted gapping in prelim test: 1062590
Number of HSP's gapped (non-prelim): 1260
length of query: 558
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 410
effective length of database: 8,886,646,355
effective search space: 3643525005550
effective search space used: 3643525005550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.4 bits)