BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008642
(558 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8FK37|CUSS_ECOL6 Sensor kinase CusS OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=cusS PE=3 SV=1
Length = 480
Score = 36.6 bits (83), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 16/182 (8%)
Query: 363 ELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPL- 421
EL+ V L+ +++ E+ + +N + IR+ ++N ++ S K L
Sbjct: 240 ELEQLV-LSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELE 298
Query: 422 -----SLDTPAKDIEMPMPPLALAPLKQNGIRP----CNVSDVLGDLFEAVRPLAHMQQR 472
+L+ + +M L LA N + P N++D +G +F+ LA + R
Sbjct: 299 DVLYSNLEELTRMAKMVSDMLFLAQADNNQLIPEKKMLNLADEVGKVFDFFEALA--EDR 356
Query: 473 QVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDD 532
VEL + VA + LR+ALSNL+ AL T G E + D LV + +
Sbjct: 357 GVELRFVGDECQVAGDPLMLRRALSNLLSNALRYTPTG---ETIVVRCQTVDHLVQVTVE 413
Query: 533 GP 534
P
Sbjct: 414 NP 415
>sp|P45608|PHOR_KLEPN Phosphate regulon sensor protein PhoR OS=Klebsiella pneumoniae
GN=phoR PE=3 SV=1
Length = 431
Score = 36.2 bits (82), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 470 QQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVI 529
Q++Q + + + L V E LR A+SNL+ A+ T G ++ + P G AL +
Sbjct: 296 QEKQTLIFTVDEQLKVLGNEEQLRSAISNLVYNAVNHTPPGTEIRVSWQRTPQG-ALFSV 354
Query: 530 DDDGPDM 536
+D+GP +
Sbjct: 355 EDNGPGI 361
>sp|P77485|CUSS_ECOLI Sensor kinase CusS OS=Escherichia coli (strain K12) GN=cusS PE=1
SV=1
Length = 480
Score = 36.2 bits (82), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 13/158 (8%)
Query: 363 ELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPL- 421
EL+ V L+ +++ E+ + +N + IR+ ++N ++ S K L
Sbjct: 240 ELEQLV-LSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELE 298
Query: 422 -----SLDTPAKDIEMPMPPLALAPLKQNGIRP----CNVSDVLGDLFEAVRPLAHMQQR 472
+L+ + +M L LA N + P N++D +G +F+ LA + R
Sbjct: 299 DVLYSNLEELTRMAKMVSDMLFLAQADNNQLIPEKKMLNLADEVGKVFDFFEALA--EDR 356
Query: 473 QVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
VEL + VA + LR+ALSNL+ AL T G
Sbjct: 357 GVELRFVGDKCQVAGDPLMLRRALSNLLSNALRYTPTG 394
>sp|Q8XBY4|CUSS_ECO57 Sensor kinase CusS OS=Escherichia coli O157:H7 GN=cusS PE=3 SV=1
Length = 482
Score = 35.8 bits (81), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 26/176 (14%)
Query: 363 ELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPL- 421
EL+ V L+ +++ E+ + +N + IR+ ++N ++ S K L
Sbjct: 240 ELEQLV-LSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELE 298
Query: 422 -----SLDTPAKDIEMPMPPLALAPLKQNGIRP----CNVSDVLGDLFEAVRPLAHMQQR 472
+L+ + +M L LA N + P N++D +G +F+ LA + R
Sbjct: 299 DVLYSNLEELTRMAKMVSDMLFLAQADNNQLIPEKKMLNLADEVGKVFDFFEALA--EDR 356
Query: 473 QVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVV 528
VEL + VA + LR+ALSNL+ AL T P G+A+VV
Sbjct: 357 GVELQFVGDECQVAGDPLMLRRALSNLLSNALRYT-------------PPGEAIVV 399
>sp|P08400|PHOR_ECOLI Phosphate regulon sensor protein PhoR OS=Escherichia coli (strain
K12) GN=phoR PE=1 SV=1
Length = 431
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 470 QQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVI 529
Q++Q E+ L V+ E LR A+SNL+ A+ T G + + P G A +
Sbjct: 296 QKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSV 354
Query: 530 DDDGPDM 536
+D+GP +
Sbjct: 355 EDNGPGI 361
>sp|P45609|PHOR_SHIDY Phosphate regulon sensor protein PhoR OS=Shigella dysenteriae
GN=phoR PE=3 SV=1
Length = 431
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 470 QQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVI 529
Q++Q E+ +L V+ E LR A+SNL+ A+ T G + + P G A +
Sbjct: 296 QKKQTFTFEIDNALKVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSV 354
Query: 530 DDDGPDM 536
+D+GP +
Sbjct: 355 EDNGPGI 361
>sp|P20968|ANFC_LITCT C-type natriuretic peptide 1 OS=Lithobates catesbeiana PE=1 SV=2
Length = 129
Score = 33.5 bits (75), Expect = 4.3, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 322 PLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQ-DAVFLTKANIVRYNE 380
PLSS+Q LS++L + +RS D + +V D L ELQ + L + + NE
Sbjct: 26 PLSSLQNLSRLLEDNFERS-FGSDEADQQLVPTDSLDQLDPELQWNKNRLEQGDSPHVNE 84
Query: 381 ETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKL 414
TL+++ N R + +SR G KL
Sbjct: 85 MTLQQLLNDPVGTSRRYRQRNKKGYSRGCFGVKL 118
>sp|A6L078|RSMH_BACV8 Ribosomal RNA small subunit methyltransferase H OS=Bacteroides
vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154)
GN=rsmH PE=3 SV=1
Length = 304
Score = 33.5 bits (75), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 436 PLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQA 495
LA A +K G++ +GD E ++PL ++ + EL+++ Q+L + V + +A
Sbjct: 162 KLASAIVKARGVKQIVT---IGDFLEVIKPLFGREREKKELAKVFQALRIEVNQEM--EA 216
Query: 496 LSNLIEGALMRTQVGGKVEIVS 517
L ++ A + GG++ +++
Sbjct: 217 LKEMLYAATKALKPGGRLVVIT 238
>sp|Q02224|CENPE_HUMAN Centromere-associated protein E OS=Homo sapiens GN=CENPE PE=1 SV=2
Length = 2701
Score = 33.1 bits (74), Expect = 5.2, Method: Composition-based stats.
Identities = 55/231 (23%), Positives = 105/231 (45%), Gaps = 33/231 (14%)
Query: 289 AMAYVMDQKSMLLQQSSWQNNAR---MSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYD 345
A+ + K+ LQ+ + + R M L EQ+ S++QT+ + +L ++ + + +
Sbjct: 863 ALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLE 922
Query: 346 IVEDIMVQGDRLRGTLQELQDAVFLTKANI---VRYNEETLKKMNNSAYS---HPESI-- 397
V+ + + D L+ + LQ K++I V N +T +++ N+ S H E+I
Sbjct: 923 EVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETINT 982
Query: 398 -RSQLSNNFSR-----ENSG-NKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPC 450
+S++S SR EN+G K + K + +D +D+E A +K N
Sbjct: 983 LKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDK-KQDLEAKNTQTLTADVKDN----- 1036
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIE 501
++ E R + + Q + EL ++ +S V E+ L+ L IE
Sbjct: 1037 -------EIIEQQRKIFSLIQEKNELQQMLES--VIAEKEQLKTDLKENIE 1078
>sp|Q7TMV3|FAKD5_MOUSE FAST kinase domain-containing protein 5 OS=Mus musculus GN=Fastkd5
PE=2 SV=1
Length = 762
Score = 32.3 bits (72), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 429 DIEMPMPPLAL-----APLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS 477
++E PP+ L PL +G CN +D LGD + PLAHMQ V+L+
Sbjct: 646 ELETGQPPMELRKKTTVPLVNSG---CNGTDRLGDGMVGLCPLAHMQPPLVKLA 696
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192,855,507
Number of Sequences: 539616
Number of extensions: 7677145
Number of successful extensions: 25487
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 25472
Number of HSP's gapped (non-prelim): 47
length of query: 558
length of database: 191,569,459
effective HSP length: 123
effective length of query: 435
effective length of database: 125,196,691
effective search space: 54460560585
effective search space used: 54460560585
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)