Query 008642
Match_columns 558
No_of_seqs 496 out of 2401
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 14:44:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008642.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008642hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2205 KdpD Osmosensitive K+ 100.0 4.3E-29 9.3E-34 276.0 30.7 244 193-553 585-836 (890)
2 PRK10490 sensor protein KdpD; 99.9 3.3E-23 7.2E-28 242.5 33.6 243 195-553 590-839 (895)
3 PRK09303 adaptive-response sen 99.9 1.8E-23 4E-28 222.6 26.2 191 295-553 138-334 (380)
4 PRK13837 two-component VirA-li 99.9 3E-22 6.6E-27 233.2 31.9 172 309-553 451-636 (828)
5 TIGR02916 PEP_his_kin putative 99.9 6.4E-22 1.4E-26 225.8 31.9 229 200-553 410-641 (679)
6 COG5002 VicK Signal transducti 99.9 1E-23 2.2E-28 214.1 14.3 179 306-553 223-403 (459)
7 PRK10618 phosphotransfer inter 99.9 1.2E-21 2.7E-26 228.2 27.1 190 294-553 436-628 (894)
8 PRK10841 hybrid sensory kinase 99.9 8.5E-21 1.8E-25 223.0 26.9 189 294-553 433-622 (924)
9 PRK11006 phoR phosphate regulo 99.9 5.8E-21 1.2E-25 205.9 23.2 174 308-552 204-377 (430)
10 PRK10364 sensor protein ZraS; 99.9 4.4E-20 9.6E-25 200.4 27.3 172 309-553 238-409 (457)
11 TIGR02956 TMAO_torS TMAO reduc 99.9 2.2E-20 4.9E-25 220.0 26.8 182 301-553 457-640 (968)
12 COG4191 Signal transduction hi 99.9 2E-20 4.4E-25 202.1 24.0 173 309-554 385-561 (603)
13 PRK15347 two component system 99.9 4.8E-20 1E-24 216.0 27.5 182 301-553 391-573 (921)
14 COG3852 NtrB Signal transducti 99.9 1.4E-20 2.9E-25 189.1 19.4 169 309-553 133-316 (363)
15 PRK11091 aerobic respiration c 99.9 1.7E-20 3.6E-25 216.9 22.4 179 304-552 279-458 (779)
16 TIGR02938 nifL_nitrog nitrogen 99.8 1.8E-19 3.9E-24 194.0 26.3 174 308-554 276-453 (494)
17 PRK10755 sensor protein BasS/P 99.8 1.4E-19 3.1E-24 189.7 23.4 181 297-552 126-307 (356)
18 PRK10604 sensor protein RstB; 99.8 1.3E-19 2.9E-24 196.0 23.8 183 292-553 196-378 (433)
19 PRK11466 hybrid sensory histid 99.8 2.5E-19 5.4E-24 210.2 27.8 183 301-552 437-620 (914)
20 PRK11107 hybrid sensory histid 99.8 1.7E-19 3.6E-24 211.2 26.1 180 304-553 289-473 (919)
21 PRK10337 sensor protein QseC; 99.8 3.7E-19 8.1E-24 191.9 24.1 184 296-552 225-408 (449)
22 PRK09835 sensor kinase CusS; P 99.8 6.4E-19 1.4E-23 191.2 25.4 191 292-553 246-436 (482)
23 PRK10549 signal transduction h 99.8 6.7E-19 1.5E-23 190.4 25.4 188 294-553 226-413 (466)
24 PRK10815 sensor protein PhoQ; 99.8 9.1E-19 2E-23 192.6 26.3 178 302-553 260-437 (485)
25 TIGR01386 cztS_silS_copS heavy 99.8 5.8E-19 1.3E-23 189.5 23.8 188 294-553 227-414 (457)
26 PRK09959 hybrid sensory histid 99.8 3.8E-19 8.2E-24 214.5 24.7 185 300-553 704-893 (1197)
27 TIGR03785 marine_sort_HK prote 99.8 1.3E-18 2.9E-23 199.2 26.3 188 293-552 470-657 (703)
28 TIGR02966 phoR_proteo phosphat 99.8 2.7E-18 5.8E-23 175.4 22.1 175 308-552 114-289 (333)
29 PRK09467 envZ osmolarity senso 99.8 2.9E-18 6.3E-23 184.0 23.4 175 295-553 216-390 (435)
30 PRK09470 cpxA two-component se 99.8 1.7E-17 3.8E-22 178.8 25.7 184 293-552 228-411 (461)
31 PRK11073 glnL nitrogen regulat 99.8 8.1E-18 1.8E-22 175.3 22.1 170 308-553 130-309 (348)
32 PRK11360 sensory histidine kin 99.8 3.3E-17 7.2E-22 180.5 24.7 172 308-553 390-562 (607)
33 COG4251 Bacteriophytochrome (l 99.8 2.3E-17 4.9E-22 178.5 20.5 207 273-553 484-698 (750)
34 PRK11100 sensory histidine kin 99.8 9.7E-17 2.1E-21 173.0 23.2 171 309-551 257-427 (475)
35 COG0642 BaeS Signal transducti 99.7 2E-15 4.4E-20 151.8 23.4 175 307-553 114-288 (336)
36 COG5000 NtrY Signal transducti 99.7 3.7E-16 8.1E-21 168.9 18.2 170 309-553 487-668 (712)
37 PRK13557 histidine kinase; Pro 99.7 1.6E-15 3.5E-20 166.1 23.6 173 308-553 163-353 (540)
38 PRK13560 hypothetical protein; 99.7 1.5E-15 3.3E-20 174.4 19.5 172 299-548 596-771 (807)
39 COG4192 Signal transduction hi 99.6 3.1E-14 6.7E-19 149.4 22.2 173 309-553 452-627 (673)
40 PRK11644 sensory histidine kin 99.6 4E-13 8.7E-18 148.4 23.5 154 309-540 303-457 (495)
41 PRK11086 sensory histidine kin 99.5 4.2E-13 9.1E-18 147.7 22.8 65 488-553 430-496 (542)
42 PRK15053 dpiB sensor histidine 99.5 4E-12 8.6E-17 140.9 23.2 83 470-553 409-497 (545)
43 PRK13559 hypothetical protein; 99.4 2.5E-12 5.5E-17 135.0 15.4 150 308-544 170-324 (361)
44 PRK10600 nitrate/nitrite senso 99.3 3.6E-10 7.7E-15 126.8 26.9 88 448-540 428-516 (569)
45 PRK10935 nitrate/nitrite senso 99.2 4.5E-09 9.7E-14 116.9 26.6 90 447-540 429-519 (565)
46 PF02518 HATPase_c: Histidine 99.1 1.3E-10 2.9E-15 101.8 7.5 66 487-553 1-66 (111)
47 COG3290 CitA Signal transducti 99.1 8.4E-09 1.8E-13 112.1 22.6 89 464-553 398-491 (537)
48 PF00512 HisKA: His Kinase A ( 98.8 3.2E-08 6.9E-13 79.3 8.0 62 308-369 2-64 (68)
49 PRK10547 chemotaxis protein Ch 98.7 2.8E-07 6E-12 105.0 17.2 101 450-553 343-479 (670)
50 PRK14868 DNA topoisomerase VI 98.7 5.5E-08 1.2E-12 109.9 11.4 65 487-552 42-109 (795)
51 PRK04184 DNA topoisomerase VI 98.6 1.3E-07 2.7E-12 104.6 7.8 69 484-552 29-102 (535)
52 TIGR01052 top6b DNA topoisomer 98.5 2.2E-07 4.7E-12 101.7 8.3 70 484-553 21-93 (488)
53 COG3850 NarQ Signal transducti 98.4 3.1E-05 6.8E-10 84.3 22.4 85 448-539 440-527 (574)
54 COG3920 Signal transduction hi 98.4 7.8E-05 1.7E-09 74.3 21.5 91 448-540 79-175 (221)
55 PRK14867 DNA topoisomerase VI 98.3 1.1E-06 2.4E-11 99.1 8.5 64 489-552 34-100 (659)
56 smart00387 HATPase_c Histidine 98.3 2.2E-06 4.7E-11 72.4 8.3 65 487-552 1-65 (111)
57 TIGR01925 spIIAB anti-sigma F 98.3 2.2E-06 4.9E-11 78.0 8.4 62 488-552 36-100 (137)
58 COG3851 UhpB Signal transducti 98.3 0.00012 2.6E-09 76.3 20.3 150 313-541 308-458 (497)
59 TIGR00585 mutl DNA mismatch re 98.1 7.4E-06 1.6E-10 85.6 8.2 61 490-554 21-81 (312)
60 PRK03660 anti-sigma F factor; 98.0 2.2E-05 4.7E-10 72.2 8.2 63 488-553 36-101 (146)
61 smart00388 HisKA His Kinase A 98.0 2.7E-05 5.9E-10 59.9 7.4 59 309-368 3-61 (66)
62 cd00075 HATPase_c Histidine ki 98.0 2.4E-05 5.1E-10 64.9 7.2 56 492-548 1-57 (103)
63 COG2972 Predicted signal trans 98.0 0.00095 2.1E-08 73.4 21.8 55 492-547 351-409 (456)
64 cd00082 HisKA Histidine Kinase 97.9 6.6E-05 1.4E-09 57.1 8.1 60 308-367 4-63 (65)
65 PRK04069 serine-protein kinase 97.9 5.4E-05 1.2E-09 71.5 8.6 65 488-553 39-106 (161)
66 COG3275 LytS Putative regulato 97.8 0.0058 1.3E-07 66.2 22.9 88 447-539 414-507 (557)
67 COG4585 Signal transduction hi 97.7 0.0044 9.6E-08 65.9 21.4 54 487-542 275-328 (365)
68 COG0643 CheA Chemotaxis protei 97.7 0.0023 4.9E-08 73.9 18.9 91 448-541 388-493 (716)
69 TIGR01924 rsbW_low_gc serine-p 97.5 0.0003 6.5E-09 66.4 8.2 63 489-552 40-105 (159)
70 COG1389 DNA topoisomerase VI, 97.5 0.00015 3.2E-09 77.7 5.3 63 488-550 33-98 (538)
71 KOG0519 Sensory transduction h 97.1 0.00011 2.4E-09 85.9 -0.2 107 446-553 288-443 (786)
72 PRK00095 mutL DNA mismatch rep 97.1 0.0013 2.7E-08 75.2 8.1 58 491-552 22-79 (617)
73 KOG0787 Dehydrogenase kinase [ 97.0 0.0033 7.2E-08 66.1 10.0 110 448-558 214-334 (414)
74 PF13492 GAF_3: GAF domain; PD 96.7 0.021 4.5E-07 49.9 11.0 100 116-221 1-102 (129)
75 PF13589 HATPase_c_3: Histidin 96.4 0.0025 5.5E-08 58.5 3.1 53 493-547 4-56 (137)
76 PF13581 HATPase_c_2: Histidin 96.4 0.012 2.6E-07 52.5 7.3 55 489-544 29-86 (125)
77 COG0323 MutL DNA mismatch repa 96.1 0.0077 1.7E-07 69.0 5.7 56 493-552 25-80 (638)
78 TIGR01817 nifA Nif-specific re 96.1 0.17 3.7E-06 56.8 16.3 145 111-306 14-170 (534)
79 COG4564 Signal transduction hi 95.7 1.1 2.4E-05 47.1 18.8 87 449-540 319-406 (459)
80 COG2172 RsbW Anti-sigma regula 95.6 0.037 8.1E-07 51.7 7.0 62 488-552 37-102 (146)
81 PF14501 HATPase_c_5: GHKL dom 94.9 0.084 1.8E-06 45.5 6.6 47 488-535 2-51 (100)
82 PRK14083 HSP90 family protein; 94.7 0.042 9.1E-07 62.5 5.6 51 494-546 26-84 (601)
83 PRK05559 DNA topoisomerase IV 94.4 0.029 6.2E-07 64.3 3.1 58 488-549 34-101 (631)
84 PF01590 GAF: GAF domain; Int 94.0 0.55 1.2E-05 42.1 10.4 24 198-221 105-128 (154)
85 PF13185 GAF_2: GAF domain; PD 93.8 1.3 2.9E-05 39.3 12.4 24 197-220 98-121 (148)
86 smart00065 GAF Domain present 93.6 2.7 5.8E-05 35.6 13.6 23 199-221 91-113 (149)
87 PRK05218 heat shock protein 90 93.4 0.11 2.4E-06 59.5 5.5 52 495-549 30-97 (613)
88 PRK05644 gyrB DNA gyrase subun 92.5 0.11 2.4E-06 59.6 4.1 50 487-540 33-84 (638)
89 TIGR01059 gyrB DNA gyrase, B s 92.2 0.12 2.7E-06 59.5 4.0 49 487-539 26-76 (654)
90 PTZ00272 heat shock protein 83 92.2 0.23 5.1E-06 57.4 6.1 49 496-545 30-92 (701)
91 KOG1979 DNA mismatch repair pr 91.3 0.22 4.8E-06 55.3 4.4 54 494-552 30-84 (694)
92 PRK15429 formate hydrogenlyase 91.0 9.6 0.00021 44.3 17.8 21 200-220 295-315 (686)
93 PRK14939 gyrB DNA gyrase subun 90.1 0.27 5.8E-06 57.4 3.9 47 490-540 36-84 (756)
94 COG0326 HtpG Molecular chapero 90.1 0.37 8E-06 54.6 4.8 31 512-543 62-92 (623)
95 COG1956 GAF domain-containing 89.2 6 0.00013 37.5 11.3 22 199-220 113-134 (163)
96 TIGR01055 parE_Gneg DNA topois 88.6 0.24 5.2E-06 56.8 2.1 49 493-545 32-90 (625)
97 PRK11061 fused phosphoenolpyru 87.7 5 0.00011 47.2 12.2 103 111-220 12-128 (748)
98 smart00433 TOP2c Topoisomerase 87.0 0.21 4.5E-06 57.0 0.4 45 493-541 3-49 (594)
99 KOG1978 DNA mismatch repair pr 85.8 0.71 1.5E-05 52.4 3.7 58 492-553 21-78 (672)
100 PTZ00130 heat shock protein 90 84.1 1.1 2.3E-05 52.7 4.2 33 512-545 123-155 (814)
101 COG2203 FhlA FOG: GAF domain [ 83.0 5.2 0.00011 35.2 7.5 22 200-221 115-136 (175)
102 TIGR01058 parE_Gpos DNA topois 82.6 1 2.2E-05 51.9 3.2 49 488-540 31-81 (637)
103 PLN03237 DNA topoisomerase 2; 80.9 2.1 4.6E-05 53.1 5.3 47 491-541 81-127 (1465)
104 PLN03128 DNA topoisomerase 2; 80.3 2.6 5.6E-05 51.5 5.7 48 490-541 55-102 (1135)
105 PTZ00108 DNA topoisomerase 2-l 79.8 2.6 5.7E-05 52.3 5.6 48 490-541 60-110 (1388)
106 PRK05022 anaerobic nitric oxid 77.3 16 0.00035 40.9 10.6 20 201-220 111-130 (509)
107 PHA02569 39 DNA topoisomerase 75.8 1.9 4.1E-05 49.4 2.7 44 493-541 51-95 (602)
108 COG0187 GyrB Type IIA topoisom 68.6 3.2 6.9E-05 47.2 2.3 44 493-542 42-85 (635)
109 COG3605 PtsP Signal transducti 66.8 31 0.00066 39.3 9.2 20 201-220 109-128 (756)
110 PTZ00109 DNA gyrase subunit b; 66.6 1.1 2.3E-05 53.0 -2.0 49 489-541 127-177 (903)
111 PF05651 Diacid_rec: Putative 66.4 44 0.00096 30.8 9.0 21 200-220 70-90 (135)
112 COG3835 CdaR Sugar diacid util 65.6 22 0.00049 37.8 7.6 20 201-220 73-92 (376)
113 COG5381 Uncharacterized protei 65.6 17 0.00037 34.0 5.9 51 491-543 63-113 (184)
114 KOG1977 DNA mismatch repair pr 65.3 11 0.00024 43.5 5.5 57 490-551 20-76 (1142)
115 PRK15429 formate hydrogenlyase 63.9 81 0.0018 36.7 12.7 21 200-220 115-135 (686)
116 PRK13558 bacterio-opsin activa 63.5 24 0.00053 40.4 8.3 48 201-294 390-437 (665)
117 KOG0020 Endoplasmic reticulum 54.3 19 0.00041 39.9 4.8 31 512-543 130-160 (785)
118 PF10090 DUF2328: Uncharacteri 52.4 2.2E+02 0.0048 27.5 11.6 47 490-537 84-130 (182)
119 PF14689 SPOB_a: Sensor_kinase 50.0 62 0.0013 25.5 6.1 24 309-332 13-36 (62)
120 KOG0019 Molecular chaperone (H 46.5 18 0.00039 41.0 3.4 33 510-543 88-120 (656)
121 PRK04158 transcriptional repre 45.6 2.2E+02 0.0047 29.3 10.6 25 197-221 107-131 (256)
122 PF06018 CodY: CodY GAF-like d 34.2 2.8E+02 0.0061 26.9 9.0 25 197-221 105-129 (177)
123 PRK11477 carbohydrate diacid t 31.2 2.2E+02 0.0049 30.4 8.8 21 200-220 75-95 (385)
124 PF07492 Trehalase_Ca-bi: Neut 28.2 44 0.00094 22.8 1.7 14 522-535 11-24 (30)
125 COG0813 DeoD Purine-nucleoside 27.6 66 0.0014 32.3 3.5 57 480-539 14-70 (236)
126 COG5385 Uncharacterized protei 26.8 5.9E+02 0.013 24.6 11.2 42 494-536 116-157 (214)
127 KOG0355 DNA topoisomerase type 23.1 98 0.0021 36.6 4.3 53 484-540 46-101 (842)
128 PF12282 H_kinase_N: Signal tr 23.0 6.1E+02 0.013 23.5 10.1 20 201-220 105-124 (145)
No 1
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=99.97 E-value=4.3e-29 Score=275.96 Aligned_cols=244 Identities=19% Similarity=0.249 Sum_probs=196.6
Q ss_pred cccccCCCceEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCCcccchhhhhhhhhhhhcc
Q 008642 193 QVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYK 272 (558)
Q Consensus 193 ~~~~~~~~~~lvlPL~~~~~vvGvLv~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~iq~~~~~~~~~~~ 272 (558)
...++|..+..++||...+.++|++.++. . . . ..
T Consensus 585 gTdTlpg~~~~~lPl~~~~~~~gvlgv~~-----------~-~---------~--~l----------------------- 618 (890)
T COG2205 585 GTDTLPGAKYLYLPLKSGGKVLGVLGVEP-----------G-L---------S--PL----------------------- 618 (890)
T ss_pred CCCCCCCCceeEeecccCCceEEEEEecC-----------C-C---------C--cc-----------------------
Confidence 45589999999999999999999999993 0 0 1 11
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCC--CcchH
Q 008642 273 FSADQRLNAINICRSLAMAYVMDQKSMLLQQ------SSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKR--SEISY 344 (558)
Q Consensus 273 f~~~qr~~~~~ia~~lalA~~l~qr~~~lqq------~~~q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~--~e~~~ 344 (558)
+..++|..+..++.++++|....+-.+..++ ..+-.+.+++.+||||||||++|.|.+..|...... .+...
T Consensus 619 l~p~~~rlL~a~~~q~AlAler~~L~~~~~~a~l~~e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~a 698 (890)
T COG2205 619 LAPEQRRLLDAVLTQIALALERVTLAEEAEQARLAAERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRA 698 (890)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHH
Confidence 3446777777888888887754333322222 222238899999999999999999999999876442 34467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHHhhhccCCCCCchhhhhhccccccccccccccccCCCCCCCC
Q 008642 345 DIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLD 424 (558)
Q Consensus 345 ~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e~l~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~ 424 (558)
+++..|..++++|..++.+|+++-.+..+ .
T Consensus 699 eLl~~I~ees~~L~rlV~NLLdmTRi~sG--------~------------------------------------------ 728 (890)
T COG2205 699 ELLSSIREESERLTRLVTNLLDMTRLQSG--------G------------------------------------------ 728 (890)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhcC--------C------------------------------------------
Confidence 89999999999999999999885333221 0
Q ss_pred CCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHh
Q 008642 425 TPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGAL 504 (558)
Q Consensus 425 ~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAl 504 (558)
-..+.++..+.+++.+++..+.... .+..+.++.+.+.+.+.+|...+.|||.|||+||+
T Consensus 729 ------------------~~l~~~~~~veEvVg~Al~r~~k~~--~~~~i~v~~~~dl~li~~D~~LieQVLiNLleNA~ 788 (890)
T COG2205 729 ------------------VNLKLDWVLVEEVVGEALQRLRKRF--TGHKIVVSVPVDLPLIHVDSPLIEQVLINLLENAL 788 (890)
T ss_pred ------------------cccccchhhHHHHHHHHHHHhhhhc--CCceEEEecCCCCceEecCHHHHHHHHHHHHHHHH
Confidence 0245688999999999999998888 55667777777778999999999999999999999
Q ss_pred hccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCCCCC
Q 008642 505 MRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 505 kyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~ 553 (558)
||+|++.+|.|.+... .+.++|.|+|+|+|||++++++||++|||+..
T Consensus 789 Kyap~~s~I~I~~~~~-~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~ 836 (890)
T COG2205 789 KYAPPGSEIRINAGVE-RENVVFSVIDEGPGIPEGELERIFDKFYRGNK 836 (890)
T ss_pred hhCCCCCeEEEEEEEe-cceEEEEEEeCCCCCChhHHHHhhhhhhcCCC
Confidence 9999999999999876 67799999999999999999999999999754
No 2
>PRK10490 sensor protein KdpD; Provisional
Probab=99.93 E-value=3.3e-23 Score=242.45 Aligned_cols=243 Identities=16% Similarity=0.169 Sum_probs=179.6
Q ss_pred cccCCCceEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCCcccchhhhhhhhhhhhcccC
Q 008642 195 QVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFS 274 (558)
Q Consensus 195 ~~~~~~~~lvlPL~~~~~vvGvLv~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~iq~~~~~~~~~~~f~ 274 (558)
.+++...+.++||..++.++|++++.. . ..... |+
T Consensus 590 ~tl~~~~~~~lPl~~~~~~~Gvl~l~~-----------~-----------~~~~~-----------------------~~ 624 (895)
T PRK10490 590 DTLPGVPYQILPLKSAQKTYGLLAVEP-----------G-----------NLRQL-----------------------MI 624 (895)
T ss_pred CcCCCCceEEEEEEECCEEEEEEEEec-----------C-----------ccccc-----------------------CC
Confidence 456777899999999999999999883 1 00011 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCC-cchHHHH
Q 008642 275 ADQRLNAINICRSLAMAYVMDQKS-----MLL-QQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRS-EISYDIV 347 (558)
Q Consensus 275 ~~qr~~~~~ia~~lalA~~l~qr~-----~~l-qq~~~q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~-e~~~~~~ 347 (558)
.+++..+..++..++.+....+.. ..+ .+..+.++++++.++|||||||++|.+++++|......+ ....+.+
T Consensus 625 ~~~~~ll~~la~~~a~aler~~l~~~~~~~~l~~e~e~lr~~lla~isHELrtPLt~I~g~~~lL~~~l~~~~~~~~~~~ 704 (895)
T PRK10490 625 PEQQRLLETFTLLIANALERLTLTASEEQARLASEREQLRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQA 704 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHhhcccccCcHHHHHH
Confidence 455556666666666555321111 111 112223478999999999999999999999887654432 2334567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHHhhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCc
Q 008642 348 EDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPA 427 (558)
Q Consensus 348 e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e~l~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~ 427 (558)
+.|..+..++.++++++.+...+...
T Consensus 705 ~~i~~~~~~l~~li~~LL~~srl~~~------------------------------------------------------ 730 (895)
T PRK10490 705 SEIRQQVLNTTRLVNNLLDMARIQSG------------------------------------------------------ 730 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC------------------------------------------------------
Confidence 88888888888888888664222110
Q ss_pred cccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhcc
Q 008642 428 KDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507 (558)
Q Consensus 428 ~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt 507 (558)
......+++++.+++++++..+...+ .++.+.+....+.+.+.+|+..|.|||.|||+||+||+
T Consensus 731 --------------~~~l~~~~~~L~eli~~~l~~l~~~~--~~~~i~l~~~~~~~~v~~D~~~L~qVL~NLL~NAik~s 794 (895)
T PRK10490 731 --------------GFNLRKEWLTLEEVVGSALQMLEPGL--SGHPINLSLPEPLTLIHVDGPLFERVLINLLENAVKYA 794 (895)
T ss_pred --------------CCcccccccCHHHHHHHHHHHHHHHh--cCCCEEEEcCCCCeEEEECHHHHHHHHHHHHHHHHHhC
Confidence 00134578999999999999998887 44567776555556899999999999999999999999
Q ss_pred CCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCCCCC
Q 008642 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 508 ~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~ 553 (558)
+.|+.|.|.+... ++.+.|.|.|+|+||+++.+++||+||++...
T Consensus 795 ~~g~~I~I~~~~~-~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~ 839 (895)
T PRK10490 795 GAQAEIGIDAHVE-GERLQLDVWDNGPGIPPGQEQLIFDKFARGNK 839 (895)
T ss_pred CCCCeEEEEEEEe-CCEEEEEEEECCCCCCHHHHHHhcCCCccCCC
Confidence 9999999998654 66799999999999999999999999998654
No 3
>PRK09303 adaptive-response sensory kinase; Validated
Probab=99.92 E-value=1.8e-23 Score=222.61 Aligned_cols=191 Identities=14% Similarity=0.121 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCC------cchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008642 295 DQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRS------EISYDIVEDIMVQGDRLRGTLQELQDAV 368 (558)
Q Consensus 295 ~qr~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~------e~~~~~~e~I~~~~~rL~~Ll~~L~d~l 368 (558)
.++...++++...+.+++++++|||||||++|.+++++|....... +...++.+.+.+..++|..+++++.++.
T Consensus 138 ~~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ll~~~ 217 (380)
T PRK09303 138 RQENETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIERLITDLLEVG 217 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666799999999999999999999999998544321 1145567778888888888888876642
Q ss_pred HHhHhhhhhhhHHHHhhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCce
Q 008642 369 FLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIR 448 (558)
Q Consensus 369 ~l~k~~I~r~~~e~l~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e 448 (558)
..... ......+
T Consensus 218 ~~~~~--------------------------------------------------------------------~~~~~~~ 229 (380)
T PRK09303 218 RTRWE--------------------------------------------------------------------ALRFNPQ 229 (380)
T ss_pred HhhcC--------------------------------------------------------------------Cceeccc
Confidence 22110 0013457
Q ss_pred eeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEE
Q 008642 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVV 528 (558)
Q Consensus 449 ~vdL~elL~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~ 528 (558)
++++.+++.+++..+...+..++..+.+....+.+.+++|+..|.|||.|||+||+||++.|+.|.|.+....++.+.|.
T Consensus 230 ~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~~~~I~i~~~~~~~~~v~i~ 309 (380)
T PRK09303 230 KLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLPSVYADQERIRQVLLNLLDNAIKYTPEGGTITLSMLHRTTQKVQVS 309 (380)
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCCCeEEeCHHHHHHHHHHHHHHHHhcCCCCceEEEEEEecCCCEEEEE
Confidence 89999999999999999987766666665445556899999999999999999999999999999998765445569999
Q ss_pred EEecCCCCCHhHHHhcccCCCCCCC
Q 008642 529 IDDDGPDMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 529 V~D~G~GI~~e~~~~IFepF~~~~~ 553 (558)
|.|+|+||+++.+.+||+||++..+
T Consensus 310 V~D~G~GI~~~~~~~iF~pf~~~~~ 334 (380)
T PRK09303 310 ICDTGPGIPEEEQERIFEDRVRLPR 334 (380)
T ss_pred EEEcCCCCCHHHHHHHccCceeCCC
Confidence 9999999999999999999998654
No 4
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.91 E-value=3e-22 Score=233.19 Aligned_cols=172 Identities=17% Similarity=0.254 Sum_probs=141.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHHhhhcc
Q 008642 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNN 388 (558)
Q Consensus 309 ~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e~l~~l~~ 388 (558)
++|+++++|||||||++|.++++++...........++++.|..+++++.++++++.++...
T Consensus 451 ~~~~~~iaHeLrtPL~~I~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~------------------ 512 (828)
T PRK13837 451 GTLASGIAHNFNNILGAILGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQILAFGRK------------------ 512 (828)
T ss_pred HHHHHHhhHHhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------------------
Confidence 68999999999999999999999998776666667788999999999999999988653110
Q ss_pred CCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHHh
Q 008642 389 SAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAH 468 (558)
Q Consensus 389 s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~~~~~~a~ 468 (558)
.....+++++.+++++++..+....
T Consensus 513 ------------------------------------------------------~~~~~~~~~l~~ll~~~~~~~~~~~- 537 (828)
T PRK13837 513 ------------------------------------------------------GERNTKPFDLSELVTEIAPLLRVSL- 537 (828)
T ss_pred ------------------------------------------------------CCCCCcEEcHHHHHHHHHHHHHHHc-
Confidence 0123478999999999999887544
Q ss_pred hcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEe--------------cCCeEEEEEEecCC
Q 008642 469 MQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAA--------------PAGDALVVIDDDGP 534 (558)
Q Consensus 469 ~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~--------------~~~~v~I~V~D~G~ 534 (558)
.++..+.+...+..+.+.+|+..|.|||.|||+||+||++.++.|.|.+... .++.+.|.|.|+|+
T Consensus 538 ~~~i~l~~~~~~~~~~v~~d~~~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~ 617 (828)
T PRK13837 538 PPGVELDFDQDQEPAVVEGNPAELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGA 617 (828)
T ss_pred cCCcEEEEEeCCCCceEEECHHHHHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCC
Confidence 2445565554555668999999999999999999999999999999988653 14458999999999
Q ss_pred CCCHhHHHhcccCCCCCCC
Q 008642 535 DMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 535 GI~~e~~~~IFepF~~~~~ 553 (558)
||+++.+.+||+||++.++
T Consensus 618 GI~~e~~~~iFe~F~~~~~ 636 (828)
T PRK13837 618 GIDEAVLPHIFEPFFTTRA 636 (828)
T ss_pred CCCHHHHHHhhCCcccCCC
Confidence 9999999999999998754
No 5
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=99.91 E-value=6.4e-22 Score=225.79 Aligned_cols=229 Identities=20% Similarity=0.230 Sum_probs=171.3
Q ss_pred CceEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCCcccchhhhhhhhhhhhcccCHHHHH
Q 008642 200 QRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRL 279 (558)
Q Consensus 200 ~~~lvlPL~~~~~vvGvLv~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~iq~~~~~~~~~~~f~~~qr~ 279 (558)
..++++||..++.++|++++..+..+ .. |+.+++.
T Consensus 410 ~~~l~vPL~~~~~~~G~l~l~~~~~~-------------------~~--------------------------~~~e~~~ 444 (679)
T TIGR02916 410 NAWLIVPLISGEELVGFVVLARPRTA-------------------GE--------------------------FNWEVRD 444 (679)
T ss_pred CceEEEEeccCCEEEEEEEEecCCCC-------------------CC--------------------------CCHHHHH
Confidence 45899999999999999999841100 11 3446666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHH
Q 008642 280 NAINICRSLAMAYVMDQKSMLLQQSSW--QNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRL 357 (558)
Q Consensus 280 ~~~~ia~~lalA~~l~qr~~~lqq~~~--q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL 357 (558)
.+..++++++.+....+..++++++.+ ..+++.+.++||||||++.+..+.+...+....++...++.+.+....++|
T Consensus 445 lL~~l~~q~a~~l~~~~~~~~l~~~~~~~~~~~~~a~i~HdLrn~l~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~rl 524 (679)
T TIGR02916 445 LLKTAGRQAASYLAQMEASEALAEARQFEAFNRMSAFVVHDLKNLVAQLSLLLRNAERHKDNPEFQDDMLETVENAVNRM 524 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 777888888777765555544444332 237788999999999999998887777655444444556677777778888
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhHHHHhhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCcc
Q 008642 358 RGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPL 437 (558)
Q Consensus 358 ~~Ll~~L~d~l~l~k~~I~r~~~e~l~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl 437 (558)
+++++++.+..
T Consensus 525 ~~ll~~l~~~~--------------------------------------------------------------------- 535 (679)
T TIGR02916 525 KKLLAQLRSKG--------------------------------------------------------------------- 535 (679)
T ss_pred HHHHHHHHhcc---------------------------------------------------------------------
Confidence 87776663210
Q ss_pred ccCcCCCCCceeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEE
Q 008642 438 ALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVS 517 (558)
Q Consensus 438 ~la~~~~~~~e~vdL~elL~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v 517 (558)
.....+++++.++++++++.++... ..+.+.. +....+.+|+..+.+|+.|||+||+||++.++.|.|.+
T Consensus 536 -----~~~~~~~~~l~~ll~~~~~~~~~~~----~~~~l~~-~~~~~v~~d~~~l~~vl~nLl~NAik~~~~~~~I~I~~ 605 (679)
T TIGR02916 536 -----LEEEKLCVDLVDLLRRAIASKRAQG----PRPEVSI-DTDLSVRADRERLERVLGHLVQNALEATPGEGRVAIRV 605 (679)
T ss_pred -----cccCCccccHHHHHHHHHHHhhhhc----CCceEEe-CCCceEEECHHHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 0123467899999999988765433 3344443 34478999999999999999999999999889999999
Q ss_pred EEecCCeEEEEEEecCCCCCHhH-HHhcccCCCCCCC
Q 008642 518 AAAPAGDALVVIDDDGPDMHYMV-IIANFAAYSPPHP 553 (558)
Q Consensus 518 ~~~~~~~v~I~V~D~G~GI~~e~-~~~IFepF~~~~~ 553 (558)
... ++.+.|+|.|||+||+++. ++++|+||+++++
T Consensus 606 ~~~-~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~ 641 (679)
T TIGR02916 606 ERE-CGAARIEIEDSGCGMSPAFIRERLFKPFDTTKG 641 (679)
T ss_pred EEc-CCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCC
Confidence 754 5679999999999999999 9999999998764
No 6
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.90 E-value=1e-23 Score=214.13 Aligned_cols=179 Identities=16% Similarity=0.193 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHHh
Q 008642 306 WQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKR-SEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLK 384 (558)
Q Consensus 306 ~q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~-~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e~l~ 384 (558)
++.++|++++|||||||||++++|.+.|....-. .+....++..-+.+.+||-+|+++|.....+..+
T Consensus 223 ~ErRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~----------- 291 (459)
T COG5002 223 RERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNA----------- 291 (459)
T ss_pred HHHHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcch-----------
Confidence 3457999999999999999999999999876443 3466778888899999999999888653221110
Q ss_pred hhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHH
Q 008642 385 KMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVR 464 (558)
Q Consensus 385 ~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~~~~ 464 (558)
...++.+.+|+...+..++..+.
T Consensus 292 ---------------------------------------------------------~~qln~e~inft~fl~~ii~R~e 314 (459)
T COG5002 292 ---------------------------------------------------------RYQLNKEWINFTAFLNEIINRFE 314 (459)
T ss_pred ---------------------------------------------------------hhhhhHHHHHhHHHHHHHHHHHH
Confidence 01256689999999999999998
Q ss_pred HHHhhcCCeEEEE-ecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHh
Q 008642 465 PLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIA 543 (558)
Q Consensus 465 ~~a~~~~~~i~l~-~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~ 543 (558)
...++....--+. .+..+.+|.+|+..+.||+.|+|+||+||+|.||+|++.+... +.++.|+|+|.|.|||.+++.+
T Consensus 315 ~~~~~e~~~~~vR~~p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~-~~~v~iSI~D~G~gIPk~d~~~ 393 (459)
T COG5002 315 MILKKETIARFVRDIPKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQR-ETWVEISISDQGLGIPKEDLEK 393 (459)
T ss_pred HHHhhHHHHHHHhcCCCCceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEeee-CcEEEEEEccCCCCCCchhHHH
Confidence 8754332211122 2556779999999999999999999999999999999999764 7779999999999999999999
Q ss_pred cccCCCCCCC
Q 008642 544 NFAAYSPPHP 553 (558)
Q Consensus 544 IFepF~~~~~ 553 (558)
||++|||...
T Consensus 394 iFdrfyRvdk 403 (459)
T COG5002 394 IFDRFYRVDK 403 (459)
T ss_pred HHHHHhhhhh
Confidence 9999999653
No 7
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=99.89 E-value=1.2e-21 Score=228.19 Aligned_cols=190 Identities=17% Similarity=0.189 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 008642 294 MDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKA 373 (558)
Q Consensus 294 l~qr~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~ 373 (558)
+.+....+++....+.+|+++++|||||||++|.+++++|.... .++...+.++.|..++++|.++++++.+...+..+
T Consensus 436 L~~a~~~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~~~-~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrle~~ 514 (894)
T PRK10618 436 LQQAQREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQTS-DEEQQQPELDQLAEQSDVLVRLVDNIQLLNMLETQ 514 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 33444455566666789999999999999999999999986543 34556778899999999999999888764322110
Q ss_pred hhhhhhHHHHhhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHH
Q 008642 374 NIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVS 453 (558)
Q Consensus 374 ~I~r~~~e~l~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~ 453 (558)
......+++++.
T Consensus 515 --------------------------------------------------------------------~~~l~~~~~~L~ 526 (894)
T PRK10618 515 --------------------------------------------------------------------DWKPEQELFSLQ 526 (894)
T ss_pred --------------------------------------------------------------------CCcccceeECHH
Confidence 001345789999
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEEEe-cCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEec--CCeEEEEEE
Q 008642 454 DVLGDLFEAVRPLAHMQQRQVELSE-LSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAP--AGDALVVID 530 (558)
Q Consensus 454 elL~~ll~~~~~~a~~~~~~i~l~~-~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~--~~~v~I~V~ 530 (558)
+++++++..+.+.+..++..+.+.. .+....+.+|+.+|+|||.|||+||+||++. |.|.|.+.... ++.+.|+|.
T Consensus 527 ~ll~~vl~~~~~~a~~k~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~-G~I~I~v~~~~~~~~~l~I~V~ 605 (894)
T PRK10618 527 DLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTTAY-GKITLEVDQDESSPDRLTIRIL 605 (894)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhCCC-CeEEEEEEEccCCCcEEEEEEE
Confidence 9999999999999977776666664 3445578999999999999999999999975 67888876432 245999999
Q ss_pred ecCCCCCHhHHHhcccCCCCCCC
Q 008642 531 DDGPDMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 531 D~G~GI~~e~~~~IFepF~~~~~ 553 (558)
|+|+||+++.+.+||+||++...
T Consensus 606 DtG~GI~~e~l~~IFePF~t~~~ 628 (894)
T PRK10618 606 DTGAGVSIKELDNLHFPFLNQTQ 628 (894)
T ss_pred ECCCCCCHHHHHHhcCccccCCC
Confidence 99999999999999999998653
No 8
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.87 E-value=8.5e-21 Score=223.01 Aligned_cols=189 Identities=13% Similarity=0.126 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 008642 294 MDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKA 373 (558)
Q Consensus 294 l~qr~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~ 373 (558)
+++..+.+++..+.+..|+++++|||||||++|.++.++|.... .++...++++.|...+++|.++++++.++..+...
T Consensus 433 L~~~~~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~~~-~~~~~~~~l~~i~~~~~~L~~lI~dlLd~srie~~ 511 (924)
T PRK10841 433 LQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE-LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESE 511 (924)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34444555566666788999999999999999999999986543 34455678899999999999999988764222110
Q ss_pred hhhhhhHHHHhhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHH
Q 008642 374 NIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVS 453 (558)
Q Consensus 374 ~I~r~~~e~l~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~ 453 (558)
....+.+++++.
T Consensus 512 --------------------------------------------------------------------~~~l~~~~~~l~ 523 (924)
T PRK10841 512 --------------------------------------------------------------------QLKIEPREFSPR 523 (924)
T ss_pred --------------------------------------------------------------------CceeeeEEecHH
Confidence 001345789999
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEEEecCC-ceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEec
Q 008642 454 DVLGDLFEAVRPLAHMQQRQVELSELSQ-SLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDD 532 (558)
Q Consensus 454 elL~~ll~~~~~~a~~~~~~i~l~~~~~-~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~ 532 (558)
+++++++..+.+.+..++..+.+...++ +..+.+|+.+|+|||.|||+||+||++. |.|.|.+... ++.+.|.|.|+
T Consensus 524 ~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~~-G~I~I~v~~~-~~~l~i~V~Dt 601 (924)
T PRK10841 524 EVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRVD-GDYLSFRVRDT 601 (924)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCCC-CcEEEEEEEe-CCEEEEEEEEc
Confidence 9999999999999877666666554333 3469999999999999999999999975 5688877654 66799999999
Q ss_pred CCCCCHhHHHhcccCCCCCCC
Q 008642 533 GPDMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 533 G~GI~~e~~~~IFepF~~~~~ 553 (558)
|+||+++.+.++|+||++...
T Consensus 602 G~GI~~e~~~~lFepF~~~~~ 622 (924)
T PRK10841 602 GVGIPAKEVVRLFDPFFQVGT 622 (924)
T ss_pred CcCCCHHHHHHHhcccccCCC
Confidence 999999999999999997543
No 9
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=99.87 E-value=5.8e-21 Score=205.90 Aligned_cols=174 Identities=20% Similarity=0.241 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHHhhhc
Q 008642 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMN 387 (558)
Q Consensus 308 ~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e~l~~l~ 387 (558)
+.+|+++++|||||||++|.+++++|......++.....++.|..++++|..+++++.+...+...
T Consensus 204 ~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~-------------- 269 (430)
T PRK11006 204 RRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAA-------------- 269 (430)
T ss_pred HHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------
Confidence 457999999999999999999999987654444455667888999999999999988664221000
Q ss_pred cCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHH
Q 008642 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLA 467 (558)
Q Consensus 388 ~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~~~~~~a 467 (558)
. .....+.+++..+++.+...+....
T Consensus 270 ---------------------------------------------~---------~~~~~~~~~~~~~~~~l~~~~~~~~ 295 (430)
T PRK11006 270 ---------------------------------------------P---------TIDLNEKVDVPMMLRVLEREAQTLS 295 (430)
T ss_pred ---------------------------------------------C---------CcccCCccCHHHHHHHHHHHHHHHh
Confidence 0 0012367888889888877766655
Q ss_pred hhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccC
Q 008642 468 HMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAA 547 (558)
Q Consensus 468 ~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFep 547 (558)
..+..+.+.. ++.+.+.+|+..|.||+.||++||+||+++++.|.|.+... ++.+.|+|.|+|+||+++.++++|+|
T Consensus 296 -~~~~~i~~~~-~~~~~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~~~-~~~~~i~V~D~G~Gi~~~~~~~if~~ 372 (430)
T PRK11006 296 -QGKHTITFEV-DNSLKVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRV-PQGAEFSVEDNGPGIAPEHIPRLTER 372 (430)
T ss_pred -cCCcEEEEec-CCCceEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEc-CCEEEEEEEEcCCCCCHHHHHHhccC
Confidence 3445555553 44567899999999999999999999999999999988654 56699999999999999999999999
Q ss_pred CCCCC
Q 008642 548 YSPPH 552 (558)
Q Consensus 548 F~~~~ 552 (558)
|++..
T Consensus 373 f~~~~ 377 (430)
T PRK11006 373 FYRVD 377 (430)
T ss_pred ccccc
Confidence 99754
No 10
>PRK10364 sensor protein ZraS; Provisional
Probab=99.87 E-value=4.4e-20 Score=200.39 Aligned_cols=172 Identities=18% Similarity=0.262 Sum_probs=142.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHHhhhcc
Q 008642 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNN 388 (558)
Q Consensus 309 ~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e~l~~l~~ 388 (558)
+++.++++||+||||++|.++++++......++..++.++.|..+.+++.++++.+.+....
T Consensus 238 ~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~------------------ 299 (457)
T PRK10364 238 GHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKP------------------ 299 (457)
T ss_pred HHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------------------
Confidence 56788999999999999999999988766555566777888899999999888877553100
Q ss_pred CCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHHh
Q 008642 389 SAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAH 468 (558)
Q Consensus 389 s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~~~~~~a~ 468 (558)
......++++.++++.++..+...+.
T Consensus 300 ------------------------------------------------------~~~~~~~~~l~~~l~~~~~~~~~~~~ 325 (457)
T PRK10364 300 ------------------------------------------------------THLALQAVDLNDLINHSLQLVSQDAN 325 (457)
T ss_pred ------------------------------------------------------CCCcceEecHHHHHHHHHHHHHHHHH
Confidence 01235789999999999999999887
Q ss_pred hcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCC
Q 008642 469 MQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAY 548 (558)
Q Consensus 469 ~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF 548 (558)
.++..+++...+....+.+|+..|.|++.|||+||+||++.++.|.|.+... ++.+.|.|.|+|+||+++.++++|+||
T Consensus 326 ~~~i~l~~~~~~~~~~~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~~~-~~~~~i~V~D~G~Gi~~~~~~~if~~~ 404 (457)
T PRK10364 326 SREIQLRFTANDTLPEIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASES-GAGVKISVTDSGKGIAADQLEAIFTPY 404 (457)
T ss_pred hcCeEEEEEcCCCCceEEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEe-CCeEEEEEEECCCCCCHHHHHHHhCcc
Confidence 7666666664444557889999999999999999999998889999998755 566999999999999999999999999
Q ss_pred CCCCC
Q 008642 549 SPPHP 553 (558)
Q Consensus 549 ~~~~~ 553 (558)
++.+.
T Consensus 405 ~~~k~ 409 (457)
T PRK10364 405 FTTKA 409 (457)
T ss_pred ccCCC
Confidence 87653
No 11
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.87 E-value=2.2e-20 Score=220.00 Aligned_cols=182 Identities=19% Similarity=0.241 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhH
Q 008642 301 LQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNE 380 (558)
Q Consensus 301 lqq~~~q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~ 380 (558)
.++....+.+|+++++|||||||++|.+++++|.+. ..++..+++++.|...+++|..+++++.++..+...
T Consensus 457 ~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~-~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~------- 528 (968)
T TIGR02956 457 AEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDT-GLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAG------- 528 (968)
T ss_pred HHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------
Confidence 344455568999999999999999999999998654 334556778999999999999999988775332110
Q ss_pred HHHhhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHH
Q 008642 381 ETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLF 460 (558)
Q Consensus 381 e~l~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll 460 (558)
......+++++.+++++++
T Consensus 529 -------------------------------------------------------------~~~~~~~~~~l~~ll~~~~ 547 (968)
T TIGR02956 529 -------------------------------------------------------------HLSISPRPFDLNALLDDVH 547 (968)
T ss_pred -------------------------------------------------------------CCeeeecccCHHHHHHHHH
Confidence 0013458899999999999
Q ss_pred HHHHHHHhhcCCeEEEEecCC-ceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCe-EEEEEEecCCCCCH
Q 008642 461 EAVRPLAHMQQRQVELSELSQ-SLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGD-ALVVIDDDGPDMHY 538 (558)
Q Consensus 461 ~~~~~~a~~~~~~i~l~~~~~-~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~-v~I~V~D~G~GI~~ 538 (558)
..+.+.+..+++.+.+...++ +..+.+|+..|+|||.|||+||+||++. |.|.|.+... ++. +.|.|.|+|+|||+
T Consensus 548 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~~~-g~i~i~~~~~-~~~~~~i~V~D~G~Gi~~ 625 (968)
T TIGR02956 548 HLMVSRAQLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTDR-GSVVLRVSLN-DDSSLLFEVEDTGCGIAE 625 (968)
T ss_pred HHHHHHHHHcCcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhCCC-CeEEEEEEEc-CCCeEEEEEEeCCCCCCH
Confidence 999999977777777765433 4478999999999999999999999975 6788888655 455 99999999999999
Q ss_pred hHHHhcccCCCCCCC
Q 008642 539 MVIIANFAAYSPPHP 553 (558)
Q Consensus 539 e~~~~IFepF~~~~~ 553 (558)
+.+.+||+||++...
T Consensus 626 ~~~~~if~~f~~~~~ 640 (968)
T TIGR02956 626 EEQATLFDAFTQADG 640 (968)
T ss_pred HHHHHHHhhhhccCC
Confidence 999999999998753
No 12
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=99.87 E-value=2e-20 Score=202.13 Aligned_cols=173 Identities=20% Similarity=0.313 Sum_probs=136.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHHhhh
Q 008642 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHM--KRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKM 386 (558)
Q Consensus 309 ~e~la~lsHELRtPLtaI~~~~~lL~~~~--~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e~l~~l 386 (558)
+++.++++|||++||++|++|++....-+ ...+...+.++.|..-.+||-.+..+|...
T Consensus 385 GQmSA~iaHElNQPLaaiRt~adna~~lLergr~e~a~~Nl~~I~~LteRma~It~~Lk~F------------------- 445 (603)
T COG4191 385 GQMSAGIAHELNQPLAAIRTYADNARLLLERGRTEEARENLERISALTERMAAITAHLKSF------------------- 445 (603)
T ss_pred HHHHHHHHHHhcCcHHHHHhHHHHHHHHHHcCChHHHHhHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 77888999999999999999987643322 223444555666767777777766666331
Q ss_pred ccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHH
Q 008642 387 NNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPL 466 (558)
Q Consensus 387 ~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~~~~~~ 466 (558)
++......+++.+.++|+.++..+...
T Consensus 446 -----------------------------------------------------Ark~~~a~~~v~l~~ai~~Al~ll~~R 472 (603)
T COG4191 446 -----------------------------------------------------ARKSRDAAGPVSLREAIEGALELLRGR 472 (603)
T ss_pred -----------------------------------------------------hccCccccCCccHHHHHHHHHHHHHHh
Confidence 222223357899999999999999999
Q ss_pred HhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccC--CCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhc
Q 008642 467 AHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ--VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIAN 544 (558)
Q Consensus 467 a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~--~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~I 544 (558)
....+..+.+...+.+++|++|+.+|+|||.|||.||++++. +.+.|.|.+... ++.+.|+|.||||||+++.+.++
T Consensus 473 ~~~~~~~l~~~~~~~~~~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~-~~~v~l~VrDnGpGi~~e~~~~l 551 (603)
T COG4191 473 LRAAGVELELDLPDAPLWVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQRE-GGQVVLTVRDNGPGIAPEALPHL 551 (603)
T ss_pred hhccCceeeccCCCCCceeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEec-CCeEEEEEccCCCCCCHHHHHhh
Confidence 977776677666666889999999999999999999999985 446788888654 66699999999999999999999
Q ss_pred ccCCCCCCCC
Q 008642 545 FAAYSPPHPT 554 (558)
Q Consensus 545 FepF~~~~~~ 554 (558)
|+||++++|.
T Consensus 552 FePF~TtK~~ 561 (603)
T COG4191 552 FEPFFTTKPV 561 (603)
T ss_pred cCCccccCcc
Confidence 9999999863
No 13
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.86 E-value=4.8e-20 Score=215.97 Aligned_cols=182 Identities=14% Similarity=0.174 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhH
Q 008642 301 LQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNE 380 (558)
Q Consensus 301 lqq~~~q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~ 380 (558)
.++....+.+++++++|||||||++|.+++++|.... .++..+++++.+...+++|..+++++.+...+...
T Consensus 391 ~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~-~~~~~~~~~~~i~~~~~~l~~li~~ll~~~~~~~~------- 462 (921)
T PRK15347 391 AEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNTP-LTAEQMDLADTARQCTLSLLAIINNLLDFSRIESG------- 462 (921)
T ss_pred HHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------
Confidence 3344445588999999999999999999999987543 34556788999999999999999988765332110
Q ss_pred HHHhhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHH
Q 008642 381 ETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLF 460 (558)
Q Consensus 381 e~l~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll 460 (558)
......+++++.+++++++
T Consensus 463 -------------------------------------------------------------~~~~~~~~~~l~~~~~~~~ 481 (921)
T PRK15347 463 -------------------------------------------------------------QMTLSLEETALLPLLDQAM 481 (921)
T ss_pred -------------------------------------------------------------CccceecccCHHHHHHHHH
Confidence 0013457899999999999
Q ss_pred HHHHHHHhhcCCeEEEEecCC-ceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHh
Q 008642 461 EAVRPLAHMQQRQVELSELSQ-SLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (558)
Q Consensus 461 ~~~~~~a~~~~~~i~l~~~~~-~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e 539 (558)
..++..+..++..+.+...+. +..+.+|+.+|+||+.|||+||+||++. |.|.|.+... ++.+.|+|.|||+||+++
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~-g~I~i~~~~~-~~~~~i~V~D~G~Gi~~~ 559 (921)
T PRK15347 482 LTIQGPAQSKSLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTET-GGIRLRVKRH-EQQLCFTVEDTGCGIDIQ 559 (921)
T ss_pred HHHHHHHHHCCcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCCC-CCEEEEEEEc-CCEEEEEEEEcCCCCCHH
Confidence 999998877666666554333 3478999999999999999999999976 5688888654 667999999999999999
Q ss_pred HHHhcccCCCCCCC
Q 008642 540 VIIANFAAYSPPHP 553 (558)
Q Consensus 540 ~~~~IFepF~~~~~ 553 (558)
.+++||+||++...
T Consensus 560 ~~~~if~~f~~~~~ 573 (921)
T PRK15347 560 QQQQIFTPFYQADT 573 (921)
T ss_pred HHHHHhcCcccCCC
Confidence 99999999998654
No 14
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=99.86 E-value=1.4e-20 Score=189.15 Aligned_cols=169 Identities=20% Similarity=0.256 Sum_probs=134.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHHhhhcc
Q 008642 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNN 388 (558)
Q Consensus 309 ~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e~l~~l~~ 388 (558)
..+..++||||||||++|+|.+|+|.+... ++..+++.+-|..++||+..|++.+.-
T Consensus 133 ~~L~r~LAHEIKNPL~GiRGAAQLLe~~lp-d~~~~~lt~lIieE~DRl~~LVDRme~---------------------- 189 (363)
T COG3852 133 KGLVRGLAHEIKNPLGGIRGAAQLLERALP-DEALRELTQLIIEEADRLRNLVDRLEV---------------------- 189 (363)
T ss_pred HHHHHHHHHHhcCcccchhhHHHHHHhhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHh----------------------
Confidence 678899999999999999999999987654 344788999999999999999988722
Q ss_pred CCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHHh
Q 008642 389 SAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAH 468 (558)
Q Consensus 389 s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~~~~~~a~ 468 (558)
|++.......++|++++++.+.......+
T Consensus 190 --------------------------------------------------~~~~rp~~r~~~NIH~VLerV~~lv~~e~- 218 (363)
T COG3852 190 --------------------------------------------------LGPQRPGDRVPVNIHEVLERVRALVEAEF- 218 (363)
T ss_pred --------------------------------------------------cCCCCCcccccchHHHHHHHHHHHHhccc-
Confidence 11122345678999999999988877665
Q ss_pred hcCCeEEEE--ecCCceEEEECHHHHHHHHHHHHHHHhhccC----CCCEEEEEEEEe-----cCC----eEEEEEEecC
Q 008642 469 MQQRQVELS--ELSQSLLVAVEEPALRQALSNLIEGALMRTQ----VGGKVEIVSAAA-----PAG----DALVVIDDDG 533 (558)
Q Consensus 469 ~~~~~i~l~--~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~----~gg~I~I~v~~~-----~~~----~v~I~V~D~G 533 (558)
..++.+. +.+..+.+++|+.+|.|||.||+.||+.+.. .+|.|.++.... .+. .+.|.|.|||
T Consensus 219 --~~~i~l~rdYDPSLP~v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNG 296 (363)
T COG3852 219 --ADNVRLIRDYDPSLPEVLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNG 296 (363)
T ss_pred --CCceEEeecCCCCCccccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCC
Confidence 2346665 3677779999999999999999999999974 347887776320 011 1578899999
Q ss_pred CCCCHhHHHhcccCCCCCCC
Q 008642 534 PDMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 534 ~GI~~e~~~~IFepF~~~~~ 553 (558)
||||++.++++|.||-++.+
T Consensus 297 PGVP~~L~~~lF~P~Vs~r~ 316 (363)
T COG3852 297 PGVPPDLQDHLFYPMVSGRE 316 (363)
T ss_pred CCCChHHhhhccccccccCC
Confidence 99999999999999977654
No 15
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.86 E-value=1.7e-20 Score=216.86 Aligned_cols=179 Identities=22% Similarity=0.215 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHH
Q 008642 304 SSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETL 383 (558)
Q Consensus 304 ~~~q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e~l 383 (558)
..+.+.+|+++++|||||||++|.++++++.... .++...++++.|...++++..+++++.++..+...
T Consensus 279 a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~---------- 347 (779)
T PRK11091 279 ASRDKTTFISTISHELRTPLNGIVGLSRILLDTE-LTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERR---------- 347 (779)
T ss_pred HHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCC----------
Confidence 3345678999999999999999999999987543 34455678899999999999999888764332110
Q ss_pred hhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHH
Q 008642 384 KKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAV 463 (558)
Q Consensus 384 ~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~~~ 463 (558)
......+++++.++++++...+
T Consensus 348 ----------------------------------------------------------~~~~~~~~~~l~~~i~~~~~~~ 369 (779)
T PRK11091 348 ----------------------------------------------------------KLQLDNQPIDFTDFLADLENLS 369 (779)
T ss_pred ----------------------------------------------------------CcEEEeeccCHHHHHHHHHHHH
Confidence 0013457899999999999999
Q ss_pred HHHHhhcCCeEEEEecCCc-eEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHH
Q 008642 464 RPLAHMQQRQVELSELSQS-LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVII 542 (558)
Q Consensus 464 ~~~a~~~~~~i~l~~~~~~-~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~ 542 (558)
...+..++..+.+...++. ..+.+|+.+|+|||.|||+||+||++. |.|.|.+....++.+.|+|.|+|+|||++.+.
T Consensus 370 ~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~-g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~ 448 (779)
T PRK11091 370 GLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQ-GGVTVRVRYEEGDMLTFEVEDSGIGIPEDELD 448 (779)
T ss_pred HHHHHhcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhCCC-CcEEEEEEEccCCEEEEEEEecCCCCCHHHHH
Confidence 9999777766666643333 369999999999999999999999964 56777776543555999999999999999999
Q ss_pred hcccCCCCCC
Q 008642 543 ANFAAYSPPH 552 (558)
Q Consensus 543 ~IFepF~~~~ 552 (558)
+||+||++.+
T Consensus 449 ~iF~~f~~~~ 458 (779)
T PRK11091 449 KIFAMYYQVK 458 (779)
T ss_pred HHHHHhhccc
Confidence 9999999975
No 16
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=99.85 E-value=1.8e-19 Score=194.04 Aligned_cols=174 Identities=16% Similarity=0.203 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHHhhhc
Q 008642 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMN 387 (558)
Q Consensus 308 ~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e~l~~l~ 387 (558)
..+++..++|||||||+.|.++.++|..... ........+.+.....++.+.++.+.+.+...
T Consensus 276 l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------- 338 (494)
T TIGR02938 276 IRETLSAAIHRLQGPMNLISAAISVLQRRGD-DAGNPASAAMLQQALSAGREHMEALRQVIPQS---------------- 338 (494)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHhccc-cccCHHHHHHHHHHHHHHHHHHHHHHHhhccC----------------
Confidence 3677888899999999999999999876522 22223333333333344444444443321100
Q ss_pred cCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHH
Q 008642 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLA 467 (558)
Q Consensus 388 ~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~~~~~~a 467 (558)
......++|+.+++++++..+...+
T Consensus 339 -------------------------------------------------------~~~~~~~~dl~~~~~~~~~~~~~~~ 363 (494)
T TIGR02938 339 -------------------------------------------------------PQEIVVPVNLNQILRDVITLSTPRL 363 (494)
T ss_pred -------------------------------------------------------cccccccccHHHHHHHHHHHhHHHH
Confidence 0122468999999999999998887
Q ss_pred hhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCC----EEEEEEEEecCCeEEEEEEecCCCCCHhHHHh
Q 008642 468 HMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG----KVEIVSAAAPAGDALVVIDDDGPDMHYMVIIA 543 (558)
Q Consensus 468 ~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg----~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~ 543 (558)
..+++.+.+......+.+.+|+..|+|||.||+.||+||++.++ .|.|.+... ++.+.|+|.|||+|||++.+.+
T Consensus 364 ~~~~i~~~~~~~~~~~~v~~d~~~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~-~~~~~~~V~D~G~Gi~~~~~~~ 442 (494)
T TIGR02938 364 LAAGIVVDWQPAATLPAILGRELQLRSLFKALVDNAIEAMNIKGWKRRELSITTALN-GDLIVVSILDSGPGIPQDLRYK 442 (494)
T ss_pred HhCCCEEEEecCCCCCeeecCHHHHHHHHHHHHHHHHHHhhccCCCcceEEEEEEec-CCEEEEEEEeCCCCCCHHHHHH
Confidence 66666666654444557899999999999999999999997763 466665433 5669999999999999999999
Q ss_pred cccCCCCCCCC
Q 008642 544 NFAAYSPPHPT 554 (558)
Q Consensus 544 IFepF~~~~~~ 554 (558)
||+||++.+++
T Consensus 443 iF~~f~~~~~~ 453 (494)
T TIGR02938 443 VFEPFFTTKGG 453 (494)
T ss_pred hcCCCcccCCC
Confidence 99999988753
No 17
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.85 E-value=1.4e-19 Score=189.68 Aligned_cols=181 Identities=18% Similarity=0.225 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 008642 297 KSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIV 376 (558)
Q Consensus 297 r~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~ 376 (558)
....+++..+++++++++++|||||||++|+++++++..... .....+....+++.++++++.+.......
T Consensus 126 ~~~~l~~~~~~~~~~~~~~sHelrtPL~~i~~~~e~l~~~~~------~~~~~~~~~~~~l~~~i~~ll~~~r~~~~--- 196 (356)
T PRK10755 126 LVSRLTSTLDQERLFTADVAHELRTPLAGIRLHLELLEKQHH------IDVAPLIARLDQMMHTVEQLLQLARAGQS--- 196 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHHHhccc------hhHHHHHHHHHHHHHHHHHHHHHHHcccc---
Confidence 333444444556789999999999999999999988754321 11233455556666666665443111000
Q ss_pred hhhHHHHhhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeH-HHH
Q 008642 377 RYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNV-SDV 455 (558)
Q Consensus 377 r~~~e~l~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL-~el 455 (558)
. .....+.+++ .++
T Consensus 197 -------------------------------------------------------~----------~~~~~~~~~l~~~~ 211 (356)
T PRK10755 197 -------------------------------------------------------F----------SSGHYQTVKLLEDV 211 (356)
T ss_pred -------------------------------------------------------c----------ccccchhhhHHHHH
Confidence 0 0122356787 899
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCC
Q 008642 456 LGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPD 535 (558)
Q Consensus 456 L~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~G 535 (558)
+..++..+...+..++..+.+...+..+.+.+|+.++.+|+.|||+||+||++.++.|.|.+... ++.+.|.|.|+|+|
T Consensus 212 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~~~-~~~~~i~V~D~G~G 290 (356)
T PRK10755 212 ILPSQDELSEMLEQRQQTLLLPESAADITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLSQE-DGGAVLAVEDEGPG 290 (356)
T ss_pred HHHHHHHHHHHHHHhCCeEEeccCCCceEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEEc-CCEEEEEEEECCCC
Confidence 99988888888766665555543455678999999999999999999999999889999988644 66699999999999
Q ss_pred CCHhHHHhcccCCCCCC
Q 008642 536 MHYMVIIANFAAYSPPH 552 (558)
Q Consensus 536 I~~e~~~~IFepF~~~~ 552 (558)
|+++..+++|+||++..
T Consensus 291 i~~~~~~~if~~f~~~~ 307 (356)
T PRK10755 291 IDESKCGELSKAFVRMD 307 (356)
T ss_pred CCHHHHHHhCCCeEeCC
Confidence 99999999999998753
No 18
>PRK10604 sensor protein RstB; Provisional
Probab=99.85 E-value=1.3e-19 Score=195.99 Aligned_cols=183 Identities=15% Similarity=0.216 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008642 292 YVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLT 371 (558)
Q Consensus 292 ~~l~qr~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~ 371 (558)
..+.+....+++....+++++++++|||||||+.|++..+++.. ... +..+.+.+..++|.++++++..+..+.
T Consensus 196 ~~fn~m~~~l~~~~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~-~~~-----~~~~~i~~~~~~l~~li~~ll~~~rl~ 269 (433)
T PRK10604 196 VAFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDN-LSA-----AESQALNRDIGQLEALIEELLTYARLD 269 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHhcC-CCc-----HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455555566666667889999999999999999998888752 111 122347778888888888876542221
Q ss_pred HhhhhhhhHHHHhhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeee
Q 008642 372 KANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCN 451 (558)
Q Consensus 372 k~~I~r~~~e~l~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vd 451 (558)
.. ......+.++
T Consensus 270 ~~--------------------------------------------------------------------~~~~~~~~~~ 281 (433)
T PRK10604 270 RP--------------------------------------------------------------------QNELHLSEPD 281 (433)
T ss_pred CC--------------------------------------------------------------------CcccCCCCCC
Confidence 10 0013457899
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEe
Q 008642 452 VSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDD 531 (558)
Q Consensus 452 L~elL~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D 531 (558)
+.+++++++..++... .++.+++....+...+.+|+..+.+|+.|||+||++|+. +.|.|.+... ++.+.|.|.|
T Consensus 282 l~~~l~~~i~~~~~~~--~~~~i~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~--~~I~I~~~~~-~~~~~I~V~D 356 (433)
T PRK10604 282 LPAWLSTHLADIQAVT--PEKTVRLDTPHQGDYGALDMRLMERVLDNLLNNALRYAH--SRVRVSLLLD-GNQACLIVED 356 (433)
T ss_pred HHHHHHHHHHHHHHHh--hcCcEEEEecCCCceEecCHHHHHHHHHHHHHHHHHhCC--CeEEEEEEEE-CCEEEEEEEE
Confidence 9999999999998877 445566665444556788999999999999999999984 6788887654 6679999999
Q ss_pred cCCCCCHhHHHhcccCCCCCCC
Q 008642 532 DGPDMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 532 ~G~GI~~e~~~~IFepF~~~~~ 553 (558)
+|+||+++.+++||+||+|...
T Consensus 357 ~G~Gi~~e~~~~if~~f~r~~~ 378 (433)
T PRK10604 357 DGPGIPPEERERVFEPFVRLDP 378 (433)
T ss_pred cCCCCCHHHHhhcCCCCccCCC
Confidence 9999999999999999998543
No 19
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.84 E-value=2.5e-19 Score=210.18 Aligned_cols=183 Identities=16% Similarity=0.199 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhH
Q 008642 301 LQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNE 380 (558)
Q Consensus 301 lqq~~~q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~ 380 (558)
.++....+..|+++++|||||||++|.+++++|.... .++..+++++.|...+++|.++++++.++..+...
T Consensus 437 ~~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~~~~------- 508 (914)
T PRK11466 437 AEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP-ALNAQRDDLRAITDSGESLLTILNDILDYSAIEAG------- 508 (914)
T ss_pred HHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------
Confidence 3344455689999999999999999999999987543 34456778999999999999999988764222110
Q ss_pred HHHhhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHH
Q 008642 381 ETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLF 460 (558)
Q Consensus 381 e~l~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll 460 (558)
. . . .....+++++.+++++++
T Consensus 509 ----------------------------------------------~----~---~------~~~~~~~~~l~~ll~~~~ 529 (914)
T PRK11466 509 ----------------------------------------------G----K---N------VSVSDEPFEPRPLLESTL 529 (914)
T ss_pred ----------------------------------------------C----C---c------ceecccccCHHHHHHHHH
Confidence 0 0 0 013457899999999999
Q ss_pred HHHHHHHhhcCCeEEEEecCC-ceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHh
Q 008642 461 EAVRPLAHMQQRQVELSELSQ-SLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (558)
Q Consensus 461 ~~~~~~a~~~~~~i~l~~~~~-~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e 539 (558)
..+...+..++..+.+...+. +..+.+|+..|+||+.|||+||+||++. |.|.|.+... ++.+.|.|.|+|+||+++
T Consensus 530 ~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NAik~~~~-g~I~i~~~~~-~~~~~i~V~D~G~Gi~~~ 607 (914)
T PRK11466 530 QLMSGRVKGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNALRFTDE-GSIVLRSRTD-GEQWLVEVEDSGCGIDPA 607 (914)
T ss_pred HHHHHHHHhCCcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHHHHhCCC-CeEEEEEEEc-CCEEEEEEEECCCCCCHH
Confidence 999999977666666554333 3479999999999999999999999975 6788888644 556899999999999999
Q ss_pred HHHhcccCCCCCC
Q 008642 540 VIIANFAAYSPPH 552 (558)
Q Consensus 540 ~~~~IFepF~~~~ 552 (558)
.+.++|+||++..
T Consensus 608 ~~~~if~~f~~~~ 620 (914)
T PRK11466 608 KLAEIFQPFVQVS 620 (914)
T ss_pred HHHHHhchhhcCC
Confidence 9999999999753
No 20
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.84 E-value=1.7e-19 Score=211.18 Aligned_cols=180 Identities=16% Similarity=0.189 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHH
Q 008642 304 SSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETL 383 (558)
Q Consensus 304 ~~~q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e~l 383 (558)
....+.+|+++++|||||||++|.++++++.+.. .++..+++++.|..++++|.++++++.++..+...
T Consensus 289 ~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~---------- 357 (919)
T PRK11107 289 AARIKSEFLANMSHELRTPLNGVIGFTRQTLKTP-LTPTQRDYLQTIERSANNLLAIINDILDFSKLEAG---------- 357 (919)
T ss_pred HHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------
Confidence 3344578999999999999999999999887543 34556788999999999999999988765322110
Q ss_pred hhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHH
Q 008642 384 KKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAV 463 (558)
Q Consensus 384 ~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~~~ 463 (558)
.......++++.+++++++..+
T Consensus 358 ----------------------------------------------------------~~~~~~~~~~l~~~l~~~~~~~ 379 (919)
T PRK11107 358 ----------------------------------------------------------KLVLENIPFSLRETLDEVVTLL 379 (919)
T ss_pred ----------------------------------------------------------CcEEEEeecCHHHHHHHHHHHH
Confidence 0013357899999999999999
Q ss_pred HHHHhhcCCeEEEEecCCc-eEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEE--ecCC--eEEEEEEecCCCCCH
Q 008642 464 RPLAHMQQRQVELSELSQS-LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAA--APAG--DALVVIDDDGPDMHY 538 (558)
Q Consensus 464 ~~~a~~~~~~i~l~~~~~~-~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~--~~~~--~v~I~V~D~G~GI~~ 538 (558)
...+..++..+.+...+.. ..+.+|+.+|+||+.|||+||+||++.| .|.|.+.. ..++ .+.|.|.|+|+||++
T Consensus 380 ~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~~g-~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~ 458 (919)
T PRK11107 380 AHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESG-NIDILVELRALSNTKVQLEVQIRDTGIGISE 458 (919)
T ss_pred HHHHHHcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCCCC-cEEEEEEEEecCCCeeEEEEEEEEeCCCcCH
Confidence 9999777777776653333 3688999999999999999999999764 45444432 2122 388999999999999
Q ss_pred hHHHhcccCCCCCCC
Q 008642 539 MVIIANFAAYSPPHP 553 (558)
Q Consensus 539 e~~~~IFepF~~~~~ 553 (558)
+.+.+||+||++..+
T Consensus 459 ~~~~~if~~f~~~~~ 473 (919)
T PRK11107 459 RQQSQLFQAFRQADA 473 (919)
T ss_pred HHHHHHhhhhccCCC
Confidence 999999999997654
No 21
>PRK10337 sensor protein QseC; Provisional
Probab=99.83 E-value=3.7e-19 Score=191.87 Aligned_cols=184 Identities=14% Similarity=0.153 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 008642 296 QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANI 375 (558)
Q Consensus 296 qr~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I 375 (558)
+....+++...++++|+++++|||||||+.|.+.++.+.......+.....++.+....+++.++++++.....+..
T Consensus 225 ~~~~~l~~~~~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ll~~~r~~~--- 301 (449)
T PRK10337 225 QLFARTHAMMVRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLLTLSRLDS--- 301 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---
Confidence 33344455555567899999999999999999988876543222333445677788888999999988865422100
Q ss_pred hhhhHHHHhhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHH
Q 008642 376 VRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455 (558)
Q Consensus 376 ~r~~~e~l~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~el 455 (558)
. ......+++++.++
T Consensus 302 --------------------------------------------------~---------------~~~~~~~~~~l~~~ 316 (449)
T PRK10337 302 --------------------------------------------------L---------------DNLQDVAEIPLEDL 316 (449)
T ss_pred --------------------------------------------------C---------------CCCCCCcccCHHHH
Confidence 0 00124578999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCC
Q 008642 456 LGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPD 535 (558)
Q Consensus 456 L~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~G 535 (558)
+++++..+...+..++..+.+...+....+.+|+..+.+++.|||+||+||++.++.|.|.+.. ..|+|.|+|+|
T Consensus 317 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~vl~Nli~NA~k~~~~~~~i~i~~~~-----~~i~i~D~G~G 391 (449)
T PRK10337 317 LQSAVMDIYHTAQQAGIDVRLTLNAHPVIRTGQPLLLSLLVRNLLDNAIRYSPQGSVVDVTLNA-----RNFTVRDNGPG 391 (449)
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCCCCceeecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEe-----eEEEEEECCCC
Confidence 9999999988887666666666544456789999999999999999999999998999888742 25999999999
Q ss_pred CCHhHHHhcccCCCCCC
Q 008642 536 MHYMVIIANFAAYSPPH 552 (558)
Q Consensus 536 I~~e~~~~IFepF~~~~ 552 (558)
||++.+.++|+||++..
T Consensus 392 i~~~~~~~if~~f~~~~ 408 (449)
T PRK10337 392 VTPEALARIGERFYRPP 408 (449)
T ss_pred CCHHHHHHhcccccCCC
Confidence 99999999999999854
No 22
>PRK09835 sensor kinase CusS; Provisional
Probab=99.83 E-value=6.4e-19 Score=191.18 Aligned_cols=191 Identities=15% Similarity=0.204 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008642 292 YVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLT 371 (558)
Q Consensus 292 ~~l~qr~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~ 371 (558)
..+.+....+++...++.+++++++|||||||+.|.+.++.+...........+.+..+..+..++..+++++.+.....
T Consensus 246 ~~~n~m~~~l~~~~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ll~~~~~~ 325 (482)
T PRK09835 246 LSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDMLFLAQAD 325 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555566666667889999999999999999999888765433333334555566667777777777665432110
Q ss_pred HhhhhhhhHHHHhhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeee
Q 008642 372 KANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCN 451 (558)
Q Consensus 372 k~~I~r~~~e~l~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vd 451 (558)
.. ......++++
T Consensus 326 ~~--------------------------------------------------------------------~~~~~~~~~~ 337 (482)
T PRK09835 326 NN--------------------------------------------------------------------QLIPEKKMLD 337 (482)
T ss_pred CC--------------------------------------------------------------------CCCCCceeec
Confidence 00 0012347899
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEe
Q 008642 452 VSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDD 531 (558)
Q Consensus 452 L~elL~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D 531 (558)
+.++++.++..++..+..+ .+.+....+...+.+|+..|.+|+.|||+||++|+++++.|.|.+... ++.+.|.|.|
T Consensus 338 l~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~d~~~l~~vl~nll~Na~~~~~~~~~I~i~~~~~-~~~~~i~v~d 414 (482)
T PRK09835 338 LADEVGKVFDFFEAWAEER--GVELRFVGDPCQVAGDPLMLRRAISNLLSNALRYTPAGEAITVRCQEV-DHQVQLVVEN 414 (482)
T ss_pred HHHHHHHHHHHHHHHHhhC--CEEEEEeCCCcEEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEe-CCEEEEEEEE
Confidence 9999999999999888554 455554334567899999999999999999999999888899988654 5668999999
Q ss_pred cCCCCCHhHHHhcccCCCCCCC
Q 008642 532 DGPDMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 532 ~G~GI~~e~~~~IFepF~~~~~ 553 (558)
+|+||+++.++++|+||++.++
T Consensus 415 ~G~gi~~~~~~~if~~f~~~~~ 436 (482)
T PRK09835 415 PGTPIAPEHLPRLFDRFYRVDP 436 (482)
T ss_pred CCCCcCHHHHHHHhCCcccCCC
Confidence 9999999999999999998654
No 23
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=99.83 E-value=6.7e-19 Score=190.42 Aligned_cols=188 Identities=16% Similarity=0.211 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 008642 294 MDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKA 373 (558)
Q Consensus 294 l~qr~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~ 373 (558)
+++....+++....+.+++++++||+||||+.|.+..+.+...... ...+.+..+..+.+++..+++++.+.......
T Consensus 226 ~n~m~~~l~~~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~~--~~~~~l~~~~~~~~~l~~li~~l~~l~~~~~~ 303 (466)
T PRK10549 226 FNQLASTLEKNEQMRRDFMADISHELRTPLAVLRGELEAIQDGVRK--FTPESVASLQAEVGTLTKLVDDLHQLSLSDEG 303 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhcccc--CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3344444555555568899999999999999999999998765432 23455677788888888888777543111000
Q ss_pred hhhhhhHHHHhhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHH
Q 008642 374 NIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVS 453 (558)
Q Consensus 374 ~I~r~~~e~l~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~ 453 (558)
......+++++.
T Consensus 304 --------------------------------------------------------------------~~~~~~~~~~~~ 315 (466)
T PRK10549 304 --------------------------------------------------------------------ALAYRKTPVDLV 315 (466)
T ss_pred --------------------------------------------------------------------CcccccCCCCHH
Confidence 001335789999
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecC
Q 008642 454 DVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533 (558)
Q Consensus 454 elL~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G 533 (558)
++++.++..++..+..++..+.+. .++.+.+.+|+..+.|++.|||+||++|++.+|.|.|.+... ++.+.|.|.|+|
T Consensus 316 ~~l~~~~~~~~~~~~~~~i~i~~~-~~~~~~~~~d~~~l~qvl~nll~NAi~~~~~~~~I~i~~~~~-~~~~~i~V~D~G 393 (466)
T PRK10549 316 PLLEVAGGAFRERFASRGLTLQLS-LPDSATVFGDPDRLMQLFNNLLENSLRYTDSGGSLHISAEQR-DKTLRLTFADSA 393 (466)
T ss_pred HHHHHHHHHHHHHHHHCCcEEEEe-cCCCcEEEeCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc-CCEEEEEEEecC
Confidence 999999999998886655555554 345567889999999999999999999999999999998754 667999999999
Q ss_pred CCCCHhHHHhcccCCCCCCC
Q 008642 534 PDMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 534 ~GI~~e~~~~IFepF~~~~~ 553 (558)
+||+++.+.++|+||++..+
T Consensus 394 ~Gi~~e~~~~lf~~~~~~~~ 413 (466)
T PRK10549 394 PGVSDEQLQKLFERFYRTEG 413 (466)
T ss_pred CCcCHHHHHHhccCcccCCC
Confidence 99999999999999998754
No 24
>PRK10815 sensor protein PhoQ; Provisional
Probab=99.83 E-value=9.1e-19 Score=192.58 Aligned_cols=178 Identities=14% Similarity=0.143 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHH
Q 008642 302 QQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEE 381 (558)
Q Consensus 302 qq~~~q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e 381 (558)
++...+.++++++++|||||||++|+++.+.|...... ...+....+..+.+++.++++.+.+...+..
T Consensus 260 ~~~~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~--~~~~~~~~~~~~i~ri~~~i~~ll~~~~~~~--------- 328 (485)
T PRK10815 260 RERYTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQM--SVEQAEPIMLEQISRISQQIGYYLHRASMRS--------- 328 (485)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------
Confidence 34444457899999999999999999999988654222 1223344566666666666665533211100
Q ss_pred HHhhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHH
Q 008642 382 TLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFE 461 (558)
Q Consensus 382 ~l~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~ 461 (558)
. ......+.+++.+++++++.
T Consensus 329 --------------------------------------------~---------------~~~~~~~~~~l~~ll~~~~~ 349 (485)
T PRK10815 329 --------------------------------------------E---------------HNLLSRELHSVAPLLDNLTS 349 (485)
T ss_pred --------------------------------------------C---------------CcccccceecHHHHHHHHHH
Confidence 0 00123478899999999999
Q ss_pred HHHHHHhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHH
Q 008642 462 AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVI 541 (558)
Q Consensus 462 ~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~ 541 (558)
.+...+..++..+.+.. +....+.+|+..|.+|+.|||+||++|++.+ |.|.+... ++.+.|.|.|+|+||+++.+
T Consensus 350 ~l~~~~~~~~i~i~~~~-~~~~~v~~d~~~l~~vl~NLi~NAik~~~~~--i~I~~~~~-~~~v~I~V~D~G~GI~~e~~ 425 (485)
T PRK10815 350 ALNKVYQRKGVNITLDI-SPEITFVGEKNDFMEVMGNVLDNACKYCLEF--VEISARQT-DEHLHIVVEDDGPGIPESKR 425 (485)
T ss_pred HHHHHHHHCCcEEEEec-CCCcEEEeCHHHHHHHHHHHHHHHHHhcCCc--EEEEEEEe-CCEEEEEEEECCCCcCHHHH
Confidence 99988866665565553 3456788999999999999999999999754 55555443 66699999999999999999
Q ss_pred HhcccCCCCCCC
Q 008642 542 IANFAAYSPPHP 553 (558)
Q Consensus 542 ~~IFepF~~~~~ 553 (558)
.+||+||++...
T Consensus 426 ~~iF~~f~~~~~ 437 (485)
T PRK10815 426 ELIFDRGQRADT 437 (485)
T ss_pred HHHhCCcccCCC
Confidence 999999998643
No 25
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.83 E-value=5.8e-19 Score=189.51 Aligned_cols=188 Identities=17% Similarity=0.211 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 008642 294 MDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKA 373 (558)
Q Consensus 294 l~qr~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~ 373 (558)
+.+....+++...+..++.++++|||||||+++.++++.+...........+.++.+..+.+++..+++++.........
T Consensus 227 ~n~m~~~l~~~~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~ 306 (457)
T TIGR01386 227 FNAMLGRLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDMLFLARADNG 306 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444455555566678899999999999999999998876543333333455666677777777777766543221110
Q ss_pred hhhhhhHHHHhhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHH
Q 008642 374 NIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVS 453 (558)
Q Consensus 374 ~I~r~~~e~l~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~ 453 (558)
......+++++.
T Consensus 307 --------------------------------------------------------------------~~~~~~~~~~~~ 318 (457)
T TIGR01386 307 --------------------------------------------------------------------QLALERVRLDLA 318 (457)
T ss_pred --------------------------------------------------------------------cccccccccCHH
Confidence 001345789999
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecC
Q 008642 454 DVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533 (558)
Q Consensus 454 elL~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G 533 (558)
+++++++..+...+...+ +.+.... ...+.+|+..|.+++.|||+||+||++.++.|.|.+... ++.+.|+|.|+|
T Consensus 319 ~~~~~~~~~~~~~~~~~~--i~~~~~~-~~~~~~~~~~l~~~~~nll~Nai~~~~~~~~I~i~~~~~-~~~~~i~v~D~G 394 (457)
T TIGR01386 319 AELAKVAEYFEPLAEERG--VRIRVEG-EGLVRGDPQMFRRAISNLLSNALRHTPDGGTITVRIERR-SDEVRVSVSNPG 394 (457)
T ss_pred HHHHHHHHHHHHHHHhCC--eEEEecC-CceEEECHHHHHHHHHHHHHHHHHcCCCCceEEEEEEec-CCEEEEEEEeCC
Confidence 999999999988886555 4444322 267899999999999999999999999889999998754 566999999999
Q ss_pred CCCCHhHHHhcccCCCCCCC
Q 008642 534 PDMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 534 ~GI~~e~~~~IFepF~~~~~ 553 (558)
+|||++.+.++|+|||+.++
T Consensus 395 ~g~~~~~~~~~~~~~~~~~~ 414 (457)
T TIGR01386 395 PGIPPEHLSRLFDRFYRVDP 414 (457)
T ss_pred CCCCHHHHHHhccccccCCc
Confidence 99999999999999998654
No 26
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.83 E-value=3.8e-19 Score=214.46 Aligned_cols=185 Identities=20% Similarity=0.231 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhh
Q 008642 300 LLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYN 379 (558)
Q Consensus 300 ~lqq~~~q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~ 379 (558)
.+.+....+.+|+++++|||||||++|.+++++|.......+...+.++.+...++++.++++++.+...+...
T Consensus 704 ~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~~~~~~~------ 777 (1197)
T PRK09959 704 KAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESG------ 777 (1197)
T ss_pred HHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------
Confidence 33444455689999999999999999999999987544334444566777888888998888888664222110
Q ss_pred HHHHhhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHH
Q 008642 380 EETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDL 459 (558)
Q Consensus 380 ~e~l~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~l 459 (558)
......+++++.++++++
T Consensus 778 --------------------------------------------------------------~~~~~~~~~~l~~~i~~~ 795 (1197)
T PRK09959 778 --------------------------------------------------------------NYQLQPQWVDIPTLVQNT 795 (1197)
T ss_pred --------------------------------------------------------------CceeeeeeeCHHHHHHHH
Confidence 001345789999999999
Q ss_pred HHHHHHHHhhcCCeEEEEe-cCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEE--EecCC--eEEEEEEecCC
Q 008642 460 FEAVRPLAHMQQRQVELSE-LSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSA--AAPAG--DALVVIDDDGP 534 (558)
Q Consensus 460 l~~~~~~a~~~~~~i~l~~-~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~--~~~~~--~v~I~V~D~G~ 534 (558)
+..+...+..++..+.+.. .+....+.+|+..|.|||.|||+||+||++.|+ +.|.+. ...++ .+.|.|.|+|+
T Consensus 796 ~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~-i~i~~~~~~~~~~~~~~~i~V~D~G~ 874 (1197)
T PRK09959 796 CHSFGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGA-VKITTSLGHIDDNHAVIKMTIMDSGS 874 (1197)
T ss_pred HHHHHHHHHhcCcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEEeeecCCceEEEEEEEEcCC
Confidence 9999998876665565553 345568999999999999999999999998653 444432 22122 37899999999
Q ss_pred CCCHhHHHhcccCCCCCCC
Q 008642 535 DMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 535 GI~~e~~~~IFepF~~~~~ 553 (558)
||+++.+.+||+||++...
T Consensus 875 Gi~~~~~~~iF~~f~~~~~ 893 (1197)
T PRK09959 875 GLSQEEQQQLFKRYSQTSA 893 (1197)
T ss_pred CCCHHHHHHhhcccccccc
Confidence 9999999999999998643
No 27
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=99.82 E-value=1.3e-18 Score=199.24 Aligned_cols=188 Identities=18% Similarity=0.217 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008642 293 VMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTK 372 (558)
Q Consensus 293 ~l~qr~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k 372 (558)
.+++....+++...+..++.+.++||+||||+.|.+..+.+.... ......+.++.+....+++..+++++.+...+..
T Consensus 470 afn~M~~~L~~~~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~~-~~~~~~~~le~i~~~i~~L~~li~~l~~~arle~ 548 (703)
T TIGR03785 470 SFAQMVARLRQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQA-LEQEKQKYLERAREGTERLSMILNNMSEATRLEQ 548 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 334444555666666688999999999999999999999886542 2334455678888888888888888765422211
Q ss_pred hhhhhhhHHHHhhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeH
Q 008642 373 ANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNV 452 (558)
Q Consensus 373 ~~I~r~~~e~l~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL 452 (558)
. ......+++|+
T Consensus 549 ~--------------------------------------------------------------------~~~~~~~~~dl 560 (703)
T TIGR03785 549 A--------------------------------------------------------------------IQSAEVEDFDL 560 (703)
T ss_pred c--------------------------------------------------------------------cccccceeecH
Confidence 0 00134588999
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEec
Q 008642 453 SDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDD 532 (558)
Q Consensus 453 ~elL~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~ 532 (558)
.+++++++..++..+.. +.+.+....+...+.+|+..|.+|+.|||+||+||++.++.|.|.+... ++.+.|+|.|+
T Consensus 561 ~~ll~~~i~~~~~~~~~--~~i~l~i~~~~~~i~~d~~~L~~il~NLI~NAik~s~~~~~I~I~~~~~-~~~v~I~V~D~ 637 (703)
T TIGR03785 561 SEVLSGCMQGYQMTYPP--QRFELNIPETPLVMRGSPELIAQMLDKLVDNAREFSPEDGLIEVGLSQN-KSHALLTVSNE 637 (703)
T ss_pred HHHHHHHHHHHHHHhhc--CCEEEEecCCCeEEEECHHHHHHHHHHHHHHHHHHCCCCCeEEEEEEEc-CCEEEEEEEEc
Confidence 99999999999988844 5566665445568999999999999999999999999999999988654 66699999999
Q ss_pred CCCCCHhHHHhcccCCCCCC
Q 008642 533 GPDMHYMVIIANFAAYSPPH 552 (558)
Q Consensus 533 G~GI~~e~~~~IFepF~~~~ 552 (558)
|+||+++.+.+||+||++..
T Consensus 638 G~GI~~e~~~~IFe~F~t~~ 657 (703)
T TIGR03785 638 GPPLPEDMGEQLFDSMVSVR 657 (703)
T ss_pred CCCCCHHHHHHHhCCCeecC
Confidence 99999999999999999755
No 28
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.81 E-value=2.7e-18 Score=175.41 Aligned_cols=175 Identities=19% Similarity=0.236 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHHhhh
Q 008642 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHM-KRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKM 386 (558)
Q Consensus 308 ~~e~la~lsHELRtPLtaI~~~~~lL~~~~-~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e~l~~l 386 (558)
+.++++.++||+||||+.|.++.++|.... ..++...+.++.|....+++.++++++.++..+...
T Consensus 114 ~~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~------------- 180 (333)
T TIGR02966 114 RRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESA------------- 180 (333)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------
Confidence 346889999999999999999999887552 223344566788888999999998888654222100
Q ss_pred ccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHH
Q 008642 387 NNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPL 466 (558)
Q Consensus 387 ~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~~~~~~ 466 (558)
......+++++.+++..++..+...
T Consensus 181 -------------------------------------------------------~~~~~~~~~~l~~~i~~~~~~~~~~ 205 (333)
T TIGR02966 181 -------------------------------------------------------ASPLEDEPVDMPALLDHLRDEAEAL 205 (333)
T ss_pred -------------------------------------------------------CccccccccCHHHHHHHHHHHHHHH
Confidence 0013457899999999999999998
Q ss_pred HhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhccc
Q 008642 467 AHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFA 546 (558)
Q Consensus 467 a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFe 546 (558)
+..++..+.+.. .....+.+|+..|.+|+.|||.||++|++.++.|.|.+... ++.+.|.|.|+|+||+++.+.++|+
T Consensus 206 ~~~~~i~i~~~~-~~~~~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~~~-~~~~~i~i~d~G~gi~~~~~~~if~ 283 (333)
T TIGR02966 206 SQGKNHQITFEI-DGGVDVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWRRD-GGGAEFSVTDTGIGIAPEHLPRLTE 283 (333)
T ss_pred HHHcCcEEEEcC-CCCceEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEEEc-CCEEEEEEEecCCCCCHHHHhhhcc
Confidence 877666666664 55678999999999999999999999999889999988654 5669999999999999999999999
Q ss_pred CCCCCC
Q 008642 547 AYSPPH 552 (558)
Q Consensus 547 pF~~~~ 552 (558)
||++..
T Consensus 284 ~~~~~~ 289 (333)
T TIGR02966 284 RFYRVD 289 (333)
T ss_pred CceecC
Confidence 998643
No 29
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.81 E-value=2.9e-18 Score=184.00 Aligned_cols=175 Identities=18% Similarity=0.271 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 008642 295 DQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKAN 374 (558)
Q Consensus 295 ~qr~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~ 374 (558)
++....+++..+++..++++++|||||||+.|+.+++++... .....+.+..+.++|.++++++.+.....
T Consensus 216 n~m~~~l~~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~------~~~~~~~i~~~~~~~~~~i~~~l~~~r~~--- 286 (435)
T PRK09467 216 NQMAAGIKQLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE------DGYLAESINKDIEECNAIIEQFIDYLRTG--- 286 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhcccc------hHHHHHHHHHHHHHHHHHHHHHHHHhccc---
Confidence 333444455555667899999999999999999888876421 23345667778888888888775431100
Q ss_pred hhhhhHHHHhhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHH
Q 008642 375 IVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSD 454 (558)
Q Consensus 375 I~r~~~e~l~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~e 454 (558)
.....+++++.+
T Consensus 287 --------------------------------------------------------------------~~~~~~~~~l~~ 298 (435)
T PRK09467 287 --------------------------------------------------------------------QEMPMEMADLNA 298 (435)
T ss_pred --------------------------------------------------------------------CCCCccccCHHH
Confidence 001246789999
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCC
Q 008642 455 VLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGP 534 (558)
Q Consensus 455 lL~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~ 534 (558)
++++++.... ..++.+.+........+.+|+..|.+++.|||+||+||+ ++.|.|.+... ++.+.|+|.|+|+
T Consensus 299 ~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~l~~il~NLl~NA~k~~--~~~i~i~~~~~-~~~~~i~V~D~G~ 371 (435)
T PRK09467 299 LLGEVIAAES----GYEREIETALQPGPIEVPMNPIAIKRALANLVVNAARYG--NGWIKVSSGTE-GKRAWFQVEDDGP 371 (435)
T ss_pred HHHHHHHHhh----hcCCeEEEecCCCCceEEECHHHHHHHHHHHHHHHHHhC--CCeEEEEEEec-CCEEEEEEEecCC
Confidence 9999987655 244566666544445899999999999999999999997 46788887644 5668999999999
Q ss_pred CCCHhHHHhcccCCCCCCC
Q 008642 535 DMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 535 GI~~e~~~~IFepF~~~~~ 553 (558)
||+++.+.++|+||++...
T Consensus 372 Gi~~~~~~~~~~~f~~~~~ 390 (435)
T PRK09467 372 GIPPEQLKHLFQPFTRGDS 390 (435)
T ss_pred CcCHHHHHHhcCCcccCCC
Confidence 9999999999999998654
No 30
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.79 E-value=1.7e-17 Score=178.76 Aligned_cols=184 Identities=17% Similarity=0.221 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008642 293 VMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTK 372 (558)
Q Consensus 293 ~l~qr~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k 372 (558)
.+.+....+++...++.+++++++|||||||+.|++..+++...... .+.+..+..+.+++.++++++..+.....
T Consensus 228 ~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~----~~~~~~i~~~~~~l~~~i~~l~~~~~~~~ 303 (461)
T PRK09470 228 SFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLATALLRRRQGE----SKELERIETEAQRLDSMINDLLVLSRNQQ 303 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccCC----hHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455555666666678899999999999999999988887643221 23456678888999999888865421100
Q ss_pred hhhhhhhHHHHhhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeH
Q 008642 373 ANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNV 452 (558)
Q Consensus 373 ~~I~r~~~e~l~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL 452 (558)
......+.+++
T Consensus 304 ---------------------------------------------------------------------~~~~~~~~~~l 314 (461)
T PRK09470 304 ---------------------------------------------------------------------KNHLERETFKA 314 (461)
T ss_pred ---------------------------------------------------------------------ccccccceecH
Confidence 00123478999
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEec
Q 008642 453 SDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDD 532 (558)
Q Consensus 453 ~elL~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~ 532 (558)
.+++++++..+.......+..+++...++...+.+|+..|.+++.|||+||++|++ +.|.|.+... ++.+.|+|.|+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~nli~NA~~~~~--~~i~i~~~~~-~~~~~i~V~D~ 391 (461)
T PRK09470 315 NSLWSEVLEDAKFEAEQMGKSLTVSAPPGPWPINGNPNALASALENIVRNALRYSH--TKIEVAFSVD-KDGLTITVDDD 391 (461)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEecCCcceEEEECHHHHHHHHHHHHHHHHHhCC--CcEEEEEEEE-CCEEEEEEEEC
Confidence 99999999988877766666666664445568999999999999999999999986 3566766544 66789999999
Q ss_pred CCCCCHhHHHhcccCCCCCC
Q 008642 533 GPDMHYMVIIANFAAYSPPH 552 (558)
Q Consensus 533 G~GI~~e~~~~IFepF~~~~ 552 (558)
|+||+++.+.++|+||++..
T Consensus 392 G~Gi~~~~~~~if~~~~~~~ 411 (461)
T PRK09470 392 GPGVPEEEREQIFRPFYRVD 411 (461)
T ss_pred CCCCCHHHHHHhcCCCccCC
Confidence 99999999999999999854
No 31
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.79 E-value=8.1e-18 Score=175.29 Aligned_cols=170 Identities=18% Similarity=0.200 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHHhhhc
Q 008642 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMN 387 (558)
Q Consensus 308 ~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e~l~~l~ 387 (558)
.+++++.++|||||||++|.++.+++.+... ++...+++..+...++++..+++++... .
T Consensus 130 ~~~~~~~iaHelr~pL~~i~~~~~~l~~~~~-~~~~~~~~~~i~~~~~~l~~lv~~l~~~--------~----------- 189 (348)
T PRK11073 130 ARDLVRGLAHEIKNPLGGLRGAAQLLSKALP-DPALTEYTKVIIEQADRLRNLVDRLLGP--------Q----------- 189 (348)
T ss_pred HHHHHHhhhHhhcChHHHHHHHHHHhhhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHhcc--------c-----------
Confidence 3678999999999999999999999876543 3445677888888888888888877321 0
Q ss_pred cCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHH
Q 008642 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLA 467 (558)
Q Consensus 388 ~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~~~~~~a 467 (558)
+ ......+++..+++.+...+....
T Consensus 190 -------~------------------------------------------------~~~~~~~~l~~~~~~~~~~~~~~~ 214 (348)
T PRK11073 190 -------R------------------------------------------------PGTHVTESIHKVAERVVQLVSLEL 214 (348)
T ss_pred -------C------------------------------------------------CCCCccccHHHHHHHHHHHHhhhc
Confidence 0 012356789999998888776554
Q ss_pred hhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhcc-CCCCEEEEEEEEec---------CCeEEEEEEecCCCCC
Q 008642 468 HMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT-QVGGKVEIVSAAAP---------AGDALVVIDDDGPDMH 537 (558)
Q Consensus 468 ~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt-~~gg~I~I~v~~~~---------~~~v~I~V~D~G~GI~ 537 (558)
. .+..+.+...++.+.+.+|+..|.||+.||++||++|+ +.++.|.|.+.... ...+.|.|.|+|+||+
T Consensus 215 ~-~~i~i~~~~~~~~~~i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~ 293 (348)
T PRK11073 215 P-DNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIP 293 (348)
T ss_pred c-CCcEEEEecCCCCCceeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCC
Confidence 2 33444544444455789999999999999999999998 77888888764210 0126799999999999
Q ss_pred HhHHHhcccCCCCCCC
Q 008642 538 YMVIIANFAAYSPPHP 553 (558)
Q Consensus 538 ~e~~~~IFepF~~~~~ 553 (558)
++.+.++|+||++..+
T Consensus 294 ~~~~~~iF~~~~~~~~ 309 (348)
T PRK11073 294 PHLQDTLFYPMVSGRE 309 (348)
T ss_pred HHHHhhccCCcccCCC
Confidence 9999999999987654
No 32
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.77 E-value=3.3e-17 Score=180.53 Aligned_cols=172 Identities=15% Similarity=0.234 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHHhhhc
Q 008642 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMN 387 (558)
Q Consensus 308 ~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e~l~~l~ 387 (558)
..++++.++||+||||+.|.++.+++... ..+....+.++.|..+.+++..+++++.+....
T Consensus 390 l~~~~~~~~hel~~~l~~i~~~~~~~~~~-~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~----------------- 451 (607)
T PRK11360 390 LGELVAGVAHEIRNPLTAIRGYVQIWRQQ-TSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRP----------------- 451 (607)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----------------
Confidence 46788999999999999999999998765 334445677888899999998888877542100
Q ss_pred cCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHH
Q 008642 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLA 467 (558)
Q Consensus 388 ~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~~~~~~a 467 (558)
.....+++++.++++.++..+....
T Consensus 452 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (607)
T PRK11360 452 -------------------------------------------------------RESQWQPVSLNALVEEVLQLFQTAG 476 (607)
T ss_pred -------------------------------------------------------CcCccceecHHHHHHHHHHHHHHhh
Confidence 0123478999999999999998776
Q ss_pred hhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCe-EEEEEEecCCCCCHhHHHhccc
Q 008642 468 HMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGD-ALVVIDDDGPDMHYMVIIANFA 546 (558)
Q Consensus 468 ~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~-v~I~V~D~G~GI~~e~~~~IFe 546 (558)
...+..+.+...++.+.+.+|+..|.+++.||+.||++|+..++.|.|.+... ++. +.|.|.|+|+||+++.+.++|+
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~-~~~~~~i~v~D~G~G~~~~~~~~~f~ 555 (607)
T PRK11360 477 VQARVDFETELDNELPPIWADPELLKQVLLNILINAVQAISARGKIRIRTWQY-SDGQVAVSIEDNGCGIDPELLKKIFD 555 (607)
T ss_pred hccCcEEEEEcCCCCCeEEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEc-CCCEEEEEEEeCCCCCCHHHHhhhcC
Confidence 55555555554444557899999999999999999999998889999988655 444 9999999999999999999999
Q ss_pred CCCCCCC
Q 008642 547 AYSPPHP 553 (558)
Q Consensus 547 pF~~~~~ 553 (558)
||++.++
T Consensus 556 ~~~~~~~ 562 (607)
T PRK11360 556 PFFTTKA 562 (607)
T ss_pred CceeCCC
Confidence 9987654
No 33
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=99.76 E-value=2.3e-17 Score=178.54 Aligned_cols=207 Identities=17% Similarity=0.179 Sum_probs=157.7
Q ss_pred cCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhh--cCCCcchHH
Q 008642 273 FSADQRLNAINICRS-----LAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLH--MKRSEISYD 345 (558)
Q Consensus 273 f~~~qr~~~~~ia~~-----lalA~~l~qr~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~~~lL~~~--~~~~e~~~~ 345 (558)
+++-....++.+-.+ +.-+..+.+.+..|+++..+.+.|...++|+||+||..|.+|+++|..+ ...+++..+
T Consensus 484 Ws~~ei~~A~~LR~aiv~ivl~~aeela~l~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~ 563 (750)
T COG4251 484 WSEVEIEAALELRKAIVGIVLRHAEELAQLRRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKE 563 (750)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhccccccChHHHH
Confidence 555444444433222 2234456677777888888889999999999999999999999999988 445667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHHhhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCC
Q 008642 346 IVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDT 425 (558)
Q Consensus 346 ~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e~l~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~ 425 (558)
.+..+.+...+|.++++.+..+..+.
T Consensus 564 ~i~~~~~~~~~~~~lidd~l~~s~l~------------------------------------------------------ 589 (750)
T COG4251 564 FITFISRLTSLMQQLIDDLLTYSKLG------------------------------------------------------ 589 (750)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhc------------------------------------------------------
Confidence 77777777777777777764431110
Q ss_pred CccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhh
Q 008642 426 PAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALM 505 (558)
Q Consensus 426 ~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlk 505 (558)
. .....++.|+.+++++++..........+ +++...+ .+.+.+|+.++.||+.|||.||+|
T Consensus 590 ------~----------~~~~l~~td~~~vv~~vl~~l~~ri~dtg--aei~i~~-lp~v~~d~~~l~qv~~NLi~Naik 650 (750)
T COG4251 590 ------L----------TEAPLQPTDVQKVVDKVLLELSQRIADTG--AEIRIAP-LPVVAADATQLGQVFQNLIANAIK 650 (750)
T ss_pred ------c----------ccCCCCCcchHHHHHHHHHhccccccccc--ceEEecc-cceeecCHHHHHHHHHHHHhhhee
Confidence 0 01234688999999999999988885544 4444333 778999999999999999999999
Q ss_pred ccCCC-CEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCCCCC
Q 008642 506 RTQVG-GKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 506 yt~~g-g~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~ 553 (558)
|..++ ..|.|..... ++.+++.|.|||.||+++..++||..|.|.+.
T Consensus 651 ~~~~e~~~i~I~~~r~-ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~s 698 (750)
T COG4251 651 FGGPENPDIEISAERQ-EDEWTFSVRDNGIGIDPAYFERIFVIFQRLHS 698 (750)
T ss_pred cCCCCCCceEEeeecc-CCceEEEecCCCCCcCHHHHHHHHHHHHhcCc
Confidence 98765 7888887544 66699999999999999999999999988764
No 34
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.75 E-value=9.7e-17 Score=172.96 Aligned_cols=171 Identities=20% Similarity=0.320 Sum_probs=137.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHHhhhcc
Q 008642 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNN 388 (558)
Q Consensus 309 ~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e~l~~l~~ 388 (558)
.++++.++||+|||++.|.+.++++... ...+...+.++.+..+.+++..+++++..+..+...
T Consensus 257 ~~~~~~~~h~l~~pl~~i~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~--------------- 320 (475)
T PRK11100 257 EQYVQTLTHELKSPLAAIRGAAELLQED-PPPEDRARFTGNILTQSARLQQLIDRLLELARLEQR--------------- 320 (475)
T ss_pred HHHHHHhhhhhcCcHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC---------------
Confidence 5678899999999999999999988763 233445667888888999999988888654221000
Q ss_pred CCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHHh
Q 008642 389 SAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAH 468 (558)
Q Consensus 389 s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~~~~~~a~ 468 (558)
......+.+++.+++++++..+...+.
T Consensus 321 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (475)
T PRK11100 321 -----------------------------------------------------QELEVLEPVALAALLEELVEAREAQAA 347 (475)
T ss_pred -----------------------------------------------------CCCccceeccHHHHHHHHHHHHHHHHH
Confidence 001235789999999999999998886
Q ss_pred hcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCC
Q 008642 469 MQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAY 548 (558)
Q Consensus 469 ~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF 548 (558)
..+..+.+.. +...+.+|...|.+++.|||.||++|+..++.|.|.+... ++.+.|+|+|+|+||+++.+.++|+||
T Consensus 348 ~~~i~~~~~~--~~~~~~~~~~~l~~vl~nli~Na~~~~~~~~~i~i~~~~~-~~~~~i~i~D~G~Gi~~~~~~~i~~~~ 424 (475)
T PRK11100 348 AKGITLRLRP--DDARVLGDPFLLRQALGNLLDNAIDFSPEGGTITLSAEVD-GEQVALSVEDQGPGIPDYALPRIFERF 424 (475)
T ss_pred hCCceEEEeC--CCceEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc-CCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 6665555542 2668899999999999999999999998889999998754 666999999999999999999999999
Q ss_pred CCC
Q 008642 549 SPP 551 (558)
Q Consensus 549 ~~~ 551 (558)
++.
T Consensus 425 ~~~ 427 (475)
T PRK11100 425 YSL 427 (475)
T ss_pred ccC
Confidence 864
No 35
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.71 E-value=2e-15 Score=151.79 Aligned_cols=175 Identities=21% Similarity=0.315 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHHhhh
Q 008642 307 QNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKM 386 (558)
Q Consensus 307 q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e~l~~l 386 (558)
....++..++||+||||+++.++..++... .. ....+..+.+....+++..+++++.........
T Consensus 114 ~~~~~~~~~~hel~~pl~~i~~~~~~~~~~-~~-~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~------------- 178 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEG-LL-DPQRELLEIIEEEAERLLRLVNDLLDLSRLEAG------------- 178 (336)
T ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHhccC-Cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------
Confidence 367899999999999999999988855443 11 113556666667778888877776443111000
Q ss_pred ccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHH
Q 008642 387 NNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPL 466 (558)
Q Consensus 387 ~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~~~~~~ 466 (558)
. . .......+++..++++++..+...
T Consensus 179 --------------------------------------~-~---------------~~~~~~~~~l~~~~~~~~~~~~~~ 204 (336)
T COG0642 179 --------------------------------------T-K---------------LKLLLELVDLAELLEEVVRLLAPL 204 (336)
T ss_pred --------------------------------------C-c---------------cccCCCCcCHHHHHHHHHHHHHHH
Confidence 0 0 001235667999999999999888
Q ss_pred HhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhccc
Q 008642 467 AHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFA 546 (558)
Q Consensus 467 a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFe 546 (558)
+......+... .+....+.+|+.++.+|+.|||+||++|++ ++.|.|.+... ++.+.|.|.|+|+||+++.++++|+
T Consensus 205 ~~~~~~~~~~~-~~~~~~v~~~~~~l~~vl~nLi~NAi~~~~-~~~i~i~~~~~-~~~i~i~V~D~G~Gi~~~~~~~if~ 281 (336)
T COG0642 205 AQEKGIELAVD-LPELPYVLGDPERLRQVLVNLLSNAIKYTP-GGEITISVRQD-DEQVTISVEDTGPGIPEEELERIFE 281 (336)
T ss_pred HHHcCCEEEEe-cCCCceEeeCHHHHHHHHHHHHHHHhccCC-CCeEEEEEEec-CCeEEEEEEcCCCCCCHHHHHHhcc
Confidence 75444444422 224568999999999999999999999999 89999999654 4469999999999999999999999
Q ss_pred CCCCCCC
Q 008642 547 AYSPPHP 553 (558)
Q Consensus 547 pF~~~~~ 553 (558)
||++.++
T Consensus 282 ~~~~~~~ 288 (336)
T COG0642 282 PFFRTDK 288 (336)
T ss_pred CeeccCC
Confidence 9999875
No 36
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.70 E-value=3.7e-16 Score=168.92 Aligned_cols=170 Identities=14% Similarity=0.175 Sum_probs=132.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHH
Q 008642 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE-----ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETL 383 (558)
Q Consensus 309 ~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e-----~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e~l 383 (558)
.+-..-++||||||||-|+..++-|.+++.+.. .-++..+.|.+|...+.+|++++..+
T Consensus 487 ~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~af---------------- 550 (712)
T COG5000 487 GDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAF---------------- 550 (712)
T ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 566667999999999999999999988876532 22456888999999999999988543
Q ss_pred hhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHH
Q 008642 384 KKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAV 463 (558)
Q Consensus 384 ~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~~~ 463 (558)
..||+ ..++..||.+++.+++..+
T Consensus 551 ------------------------------------------------ARmP~--------p~~e~~dL~~ll~e~~~L~ 574 (712)
T COG5000 551 ------------------------------------------------ARMPA--------PKLEKSDLRALLKEVSFLY 574 (712)
T ss_pred ------------------------------------------------hcCCC--------CCCCcchHHHHHHHHHHHH
Confidence 11222 4568999999999999877
Q ss_pred HHHHhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccC-------CCCEEEEEEEEecCCeEEEEEEecCCCC
Q 008642 464 RPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ-------VGGKVEIVSAAAPAGDALVVIDDDGPDM 536 (558)
Q Consensus 464 ~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~-------~gg~I~I~v~~~~~~~v~I~V~D~G~GI 536 (558)
.... ..+.+......+++...+|+..|.|||.|||+||.++.. +++.|+++.... ++.+++.|.|||.|.
T Consensus 575 e~~~--~~i~f~~e~g~epl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~-~g~i~v~V~DNGkG~ 651 (712)
T COG5000 575 EIGN--DHIVFAAEFGGEPLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDA-DGRIVVDVIDNGKGF 651 (712)
T ss_pred hccC--CCeEEEeecCCCceeeecCHHHHHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecC-CCeEEEEEecCCCCC
Confidence 6544 344555555566678899999999999999999999864 233466665433 566999999999999
Q ss_pred CHhHHHhcccCCCCCCC
Q 008642 537 HYMVIIANFAAYSPPHP 553 (558)
Q Consensus 537 ~~e~~~~IFepF~~~~~ 553 (558)
|.+.+.++||||-++.+
T Consensus 652 p~e~r~r~~EPYvTtr~ 668 (712)
T COG5000 652 PRENRHRALEPYVTTRE 668 (712)
T ss_pred ChHHhhhhccCceeccc
Confidence 99999999999976543
No 37
>PRK13557 histidine kinase; Provisional
Probab=99.70 E-value=1.6e-15 Score=166.12 Aligned_cols=173 Identities=13% Similarity=0.122 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCC----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHH
Q 008642 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRS----EISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETL 383 (558)
Q Consensus 308 ~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~----e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e~l 383 (558)
...++..++||+||||+.|.++.+++....... ....+.++.|....+++..+++++......
T Consensus 163 l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~------------- 229 (540)
T PRK13557 163 LGQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAFARK------------- 229 (540)
T ss_pred hhhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-------------
Confidence 356888999999999999999999986654321 223456677777788888888777442100
Q ss_pred hhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHH
Q 008642 384 KKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAV 463 (558)
Q Consensus 384 ~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~~~ 463 (558)
.......+++..+++.+...+
T Consensus 230 -----------------------------------------------------------~~~~~~~~~l~~~i~~~~~~~ 250 (540)
T PRK13557 230 -----------------------------------------------------------QRLEGRVLNLNGLVSGMGELA 250 (540)
T ss_pred -----------------------------------------------------------CCCCCcccCHHHHHHHHHHHH
Confidence 012346688999998887766
Q ss_pred HHHHhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEe--------------cCCeEEEEE
Q 008642 464 RPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAA--------------PAGDALVVI 529 (558)
Q Consensus 464 ~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~--------------~~~~v~I~V 529 (558)
.... .....+.+...+..+.+.+|+..+.|||.||+.||++|++.++.|.|..... .++.+.|.|
T Consensus 251 ~~~~-~~~~~i~~~~~~~~~~~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v 329 (540)
T PRK13557 251 ERTL-GDAVTIETDLAPDLWNCRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAV 329 (540)
T ss_pred HHhc-CCCeEEEEecCCCCCceeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCccccccccCCCCCCEEEEEE
Confidence 5433 2333344433444557899999999999999999999999888888876431 134588999
Q ss_pred EecCCCCCHhHHHhcccCCCCCCC
Q 008642 530 DDDGPDMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 530 ~D~G~GI~~e~~~~IFepF~~~~~ 553 (558)
.|||+||+++.+.++|+||++...
T Consensus 330 ~D~G~Gi~~~~~~~if~~~~~~~~ 353 (540)
T PRK13557 330 TDTGSGMPPEILARVMDPFFTTKE 353 (540)
T ss_pred EcCCCCCCHHHHHhccCCCcccCC
Confidence 999999999999999999998754
No 38
>PRK13560 hypothetical protein; Provisional
Probab=99.67 E-value=1.5e-15 Score=174.40 Aligned_cols=172 Identities=10% Similarity=0.093 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Q 008642 299 MLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRY 378 (558)
Q Consensus 299 ~~lqq~~~q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~ 378 (558)
+.++++..++.+|+++|+|||||||++|.++++++....... .....+ ....+++..+...+... .
T Consensus 596 ~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~l--------~-- 661 (807)
T PRK13560 596 EKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKLHDE-EAKCAF---AESQDRICAMALAHEKL--------Y-- 661 (807)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhcCCH-HHHHHH---HHHHHHHHHHHHHHHHH--------h--
Confidence 345556666789999999999999999999999887654432 222222 22222332222211110 0
Q ss_pred hHHHHhhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHH
Q 008642 379 NEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGD 458 (558)
Q Consensus 379 ~~e~l~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ 458 (558)
.......+++.++++.
T Consensus 662 ----------------------------------------------------------------~~~~~~~~~l~~~i~~ 677 (807)
T PRK13560 662 ----------------------------------------------------------------QSEDLADIDFLDYIES 677 (807)
T ss_pred ----------------------------------------------------------------ccccchhccHHHHHHH
Confidence 0012367899999999
Q ss_pred HHHHHHHHHhhcCCeEEEEecCCce-EEEECHHHHHHHHHHHHHHHhhccCCC---CEEEEEEEEecCCeEEEEEEecCC
Q 008642 459 LFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMRTQVG---GKVEIVSAAAPAGDALVVIDDDGP 534 (558)
Q Consensus 459 ll~~~~~~a~~~~~~i~l~~~~~~~-~V~~D~~~L~qVL~NLI~NAlkyt~~g---g~I~I~v~~~~~~~v~I~V~D~G~ 534 (558)
++..+...+......+.+....+.. ....+...+.+||.||+.||+||+.++ +.|.|.+....++.+.|+|+|||+
T Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~v~i~V~D~G~ 757 (807)
T PRK13560 678 LTAHLKNSFAIDFGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIKVEIREQGDGMVNLCVADDGI 757 (807)
T ss_pred HHHHHHHHhccccCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCEEEEEEEeCCC
Confidence 9998887765555556665433333 333445578899999999999998543 578888765434569999999999
Q ss_pred CCCHhHHHhcccCC
Q 008642 535 DMHYMVIIANFAAY 548 (558)
Q Consensus 535 GI~~e~~~~IFepF 548 (558)
|||++...+.|+++
T Consensus 758 GI~~~~~~~~~~gL 771 (807)
T PRK13560 758 GLPAGFDFRAAETL 771 (807)
T ss_pred cCCccccccccCCc
Confidence 99998776666654
No 39
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.63 E-value=3.1e-14 Score=149.41 Aligned_cols=173 Identities=18% Similarity=0.280 Sum_probs=127.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHHhhh
Q 008642 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHM--KRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKM 386 (558)
Q Consensus 309 ~e~la~lsHELRtPLtaI~~~~~lL~~~~--~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e~l~~l 386 (558)
++.|..++|||..||+++..|.=--.+.. .+.+.....++.|..-.+|+..+++.+...
T Consensus 452 GqTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF------------------- 512 (673)
T COG4192 452 GQTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQF------------------- 512 (673)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 77888999999999999998754333322 233344455555655556666655555332
Q ss_pred ccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHH
Q 008642 387 NNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPL 466 (558)
Q Consensus 387 ~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~~~~~~ 466 (558)
.|..+. .....||++.++++...+.++..
T Consensus 513 -------------------~Rk~s~--------------------------------~~~lqpV~L~~~v~~AweLl~~k 541 (673)
T COG4192 513 -------------------ARKNSS--------------------------------DESLQPVRLNSVVEQAWELLQTK 541 (673)
T ss_pred -------------------HhccCC--------------------------------CCCcccccHHHHHHHHHHHHHhh
Confidence 000000 11258999999999999999888
Q ss_pred HhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCC-CEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcc
Q 008642 467 AHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG-GKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANF 545 (558)
Q Consensus 467 a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~g-g~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IF 545 (558)
. +.+.+.+..+.+.++|.+|...++|||.||+-||++++... ..|.|.+.....+..+|.|.|||+|-|-+..+++|
T Consensus 542 h--k~rQ~~Li~ptD~~~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dkLl 619 (673)
T COG4192 542 H--KRRQIKLINPTDDLMVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVDKLL 619 (673)
T ss_pred h--hhccccccCCcccceecchhhhHHHHHHHHHHHHHhhhccCCceEEEEeecCcccceEEEEecCCCCCchhHHHHhc
Confidence 8 44667777666888999999999999999999999998644 56777765443455999999999999999999999
Q ss_pred cCCCCCCC
Q 008642 546 AAYSPPHP 553 (558)
Q Consensus 546 epF~~~~~ 553 (558)
.||.+.+.
T Consensus 620 ~PFttsK~ 627 (673)
T COG4192 620 TPFTTSKE 627 (673)
T ss_pred CCcccccc
Confidence 99987654
No 40
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.56 E-value=4e-13 Score=148.38 Aligned_cols=154 Identities=12% Similarity=0.126 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHHhhhcc
Q 008642 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNN 388 (558)
Q Consensus 309 ~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e~l~~l~~ 388 (558)
+++.+.+.||+||||++|++.++++.+....++...+.++.|.+.+.++.+.++++.+. .
T Consensus 303 ~~ia~elhdeI~~pLtaI~~~a~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~----------l---------- 362 (495)
T PRK11644 303 RDVARELHDEIGQTITAIRTQAGIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGR----------L---------- 362 (495)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhc----------c----------
Confidence 56667788999999999999999886533333334456677777777777666665321 0
Q ss_pred CCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHHh
Q 008642 389 SAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAH 468 (558)
Q Consensus 389 s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~~~~~~a~ 468 (558)
.....+.+++.+.+++++..+....
T Consensus 363 ------------------------------------------------------r~~~l~~~~L~~~l~~l~~~l~~~~- 387 (495)
T PRK11644 363 ------------------------------------------------------RPRQLDDLTLEQAIRSLMREMELED- 387 (495)
T ss_pred ------------------------------------------------------CCcccccCCHHHHHHHHHHHHHHhh-
Confidence 0012356899999999998887655
Q ss_pred hcCCeEEEEe-cCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhH
Q 008642 469 MQQRQVELSE-LSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMV 540 (558)
Q Consensus 469 ~~~~~i~l~~-~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~ 540 (558)
.+..+++.. .++......++..+.|++.|+++||+||++. +.|.|.+... ++.+.|+|+|||+||++++
T Consensus 388 -~~~~v~l~~~~~~~~l~~~~~~~L~ril~nlL~NAiKha~~-~~I~I~l~~~-~~~i~l~V~DnG~Gi~~~~ 457 (495)
T PRK11644 388 -RGIVSHLDWRIDESALSETQRVTLFRVCQEGLNNIVKHADA-SAVTLQGWQQ-DERLMLVIEDDGSGLPPGS 457 (495)
T ss_pred -cCceEEEEecCCcccCChhHHHHHHHHHHHHHHHHHHhCCC-CEEEEEEEEc-CCEEEEEEEECCCCCCcCC
Confidence 455566653 2333355667888999999999999999875 6788888654 5669999999999999764
No 41
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.55 E-value=4.2e-13 Score=147.70 Aligned_cols=65 Identities=28% Similarity=0.266 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHHHHhhccC--CCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCCCCC
Q 008642 488 EEPALRQALSNLIEGALMRTQ--VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 488 D~~~L~qVL~NLI~NAlkyt~--~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~ 553 (558)
+...|.+|+.||++||+||++ .++.|.|.+... ++.+.|.|.|+|+||+++.+.++|+||++.+.
T Consensus 430 ~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~-~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~ 496 (542)
T PRK11086 430 QVHELITILGNLIENALEAVGGEEGGEISVSLHYR-NGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKG 496 (542)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEc-CCEEEEEEEECCCCCCHHHHHHHHhCCCccCC
Confidence 345799999999999999974 457888888654 66699999999999999999999999997653
No 42
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.48 E-value=4e-12 Score=140.94 Aligned_cols=83 Identities=13% Similarity=0.154 Sum_probs=64.7
Q ss_pred cCCeEEEEecC--CceEEEECHHHHHHHHHHHHHHHhhcc---CC-CCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHh
Q 008642 470 QQRQVELSELS--QSLLVAVEEPALRQALSNLIEGALMRT---QV-GGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIA 543 (558)
Q Consensus 470 ~~~~i~l~~~~--~~~~V~~D~~~L~qVL~NLI~NAlkyt---~~-gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~ 543 (558)
.+..+.+.... ..+...+|+..|.||+.|||+||++|+ +. ++.|.|.+... ++.+.|.|.|||+|||++.+++
T Consensus 409 ~~i~~~~~~~~~~~~l~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~-~~~~~i~V~D~G~Gi~~~~~~~ 487 (545)
T PRK15053 409 LGLKMVIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDE-GDDVVIEVADQGCGVPESLRDK 487 (545)
T ss_pred hCCceEEcCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEEC-CCEEEEEEEeCCCCcCHHHHHH
Confidence 44455544211 123567899999999999999999995 33 36788887643 5568999999999999999999
Q ss_pred cccCCCCCCC
Q 008642 544 NFAAYSPPHP 553 (558)
Q Consensus 544 IFepF~~~~~ 553 (558)
||+||+++.+
T Consensus 488 iF~~~~~tk~ 497 (545)
T PRK15053 488 IFEQGVSTRA 497 (545)
T ss_pred HhCCCCCCCC
Confidence 9999999765
No 43
>PRK13559 hypothetical protein; Provisional
Probab=99.42 E-value=2.5e-12 Score=134.97 Aligned_cols=150 Identities=10% Similarity=0.138 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHHhhhc
Q 008642 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMN 387 (558)
Q Consensus 308 ~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e~l~~l~ 387 (558)
+.+++..++|++||||+.|.++..++.. .....++++.|.....+|..+++.+.+
T Consensus 170 ~~~l~~~l~H~~~n~L~~i~~~~~l~~~----~~~~~~~~~~i~~~~~~l~~~~~~ll~--------------------- 224 (361)
T PRK13559 170 ERRLAREVDHRSKNVFAVVDSIVRLTGR----ADDPSLYAAAIQERVQALARAHETLLD--------------------- 224 (361)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHHHHHhc---------------------
Confidence 3567889999999999999999998752 122334555565555555544443311
Q ss_pred cCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHH
Q 008642 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLA 467 (558)
Q Consensus 388 ~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~~~~~~a 467 (558)
....+++++.++++.++..+...
T Consensus 225 --------------------------------------------------------~~~~~~v~l~~~~~~~~~~~~~~- 247 (361)
T PRK13559 225 --------------------------------------------------------ERGWETVEVEELIRAQVAPYAPR- 247 (361)
T ss_pred --------------------------------------------------------cCCcCcccHHHHHHHHHHhhcCC-
Confidence 01246789999999998876532
Q ss_pred hhcCCeEEEEecCCceEEEECH-HHHHHHHHHHHHHHhhc---cCCCCEEEEEEEE-ecCCeEEEEEEecCCCCCHhHHH
Q 008642 468 HMQQRQVELSELSQSLLVAVEE-PALRQALSNLIEGALMR---TQVGGKVEIVSAA-APAGDALVVIDDDGPDMHYMVII 542 (558)
Q Consensus 468 ~~~~~~i~l~~~~~~~~V~~D~-~~L~qVL~NLI~NAlky---t~~gg~I~I~v~~-~~~~~v~I~V~D~G~GI~~e~~~ 542 (558)
+..+.+.. ..+.+..+. ..|.+||.||+.||+|| ++.+|.|.|.+.. ..++.+.|.|.|+|.|++++...
T Consensus 248 ---~~~i~~~~--~~~~~~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~~~~ 322 (361)
T PRK13559 248 ---ATRVAFEG--PGIRLGAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPSPEGAGFRIDWQEQGGPTPPKLAK 322 (361)
T ss_pred ---CceEEEEC--CCeeeCHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCCeEEEEEECCCCCCCCCCCC
Confidence 34455542 223333232 46999999999999999 6678899998832 22455899999999999887554
Q ss_pred hc
Q 008642 543 AN 544 (558)
Q Consensus 543 ~I 544 (558)
+.
T Consensus 323 ~g 324 (361)
T PRK13559 323 RG 324 (361)
T ss_pred CC
Confidence 43
No 44
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.33 E-value=3.6e-10 Score=126.76 Aligned_cols=88 Identities=17% Similarity=0.111 Sum_probs=63.7
Q ss_pred eeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEE-ECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEE
Q 008642 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVA-VEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL 526 (558)
Q Consensus 448 e~vdL~elL~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~-~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~ 526 (558)
..+++.+.+..++..+.... +..+.+....+...+. .+...+.+++.|+|+||+||++. +.|.|.+... ++.+.
T Consensus 428 ~~~~l~~~l~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~l~~il~ell~NA~kha~a-~~i~V~~~~~-~~~~~ 502 (569)
T PRK10600 428 TEPGLRPALEASCEEFSARF---GFPVKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHAQA-SEVVVTVAQN-QNQVK 502 (569)
T ss_pred ccCCHHHHHHHHHHHHHHHh---CCeEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCC-CeEEEEEEEc-CCEEE
Confidence 45788899999988877554 2345554321222222 23456999999999999999965 6788888644 56699
Q ss_pred EEEEecCCCCCHhH
Q 008642 527 VVIDDDGPDMHYMV 540 (558)
Q Consensus 527 I~V~D~G~GI~~e~ 540 (558)
|.|.|+|+||+++.
T Consensus 503 l~V~D~G~Gi~~~~ 516 (569)
T PRK10600 503 LSVQDNGCGVPENA 516 (569)
T ss_pred EEEEECCCCCCccc
Confidence 99999999999864
No 45
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.21 E-value=4.5e-09 Score=116.92 Aligned_cols=90 Identities=20% Similarity=0.343 Sum_probs=65.4
Q ss_pred ceeeeHHHHHHHHHHHHHHHHhhcCCeEEEEe-cCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeE
Q 008642 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSE-LSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDA 525 (558)
Q Consensus 447 ~e~vdL~elL~~ll~~~~~~a~~~~~~i~l~~-~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v 525 (558)
..++++.+++..++..++... +..+.+.. .+.......+...+.|++.|++.||+||++. +.|.|.+....++.+
T Consensus 429 ~~~~~l~~~l~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~l~qv~~nll~NA~k~~~~-~~i~i~~~~~~~~~~ 504 (565)
T PRK10935 429 IQEANLGSALEEMLDQLRNQT---DAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHANA-SEIAVSCVTNPDGEH 504 (565)
T ss_pred CCCCCHHHHHHHHHHHHHHhh---CCeEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCC-CeEEEEEEEcCCCEE
Confidence 367889999999999887643 23455443 2222233334456999999999999999864 678888764435569
Q ss_pred EEEEEecCCCCCHhH
Q 008642 526 LVVIDDDGPDMHYMV 540 (558)
Q Consensus 526 ~I~V~D~G~GI~~e~ 540 (558)
.|.|.|+|+|||+..
T Consensus 505 ~i~V~D~G~Gi~~~~ 519 (565)
T PRK10935 505 TVSIRDDGIGIGELK 519 (565)
T ss_pred EEEEEECCcCcCCCC
Confidence 999999999999854
No 46
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.12 E-value=1.3e-10 Score=101.76 Aligned_cols=66 Identities=23% Similarity=0.347 Sum_probs=61.3
Q ss_pred ECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCCCCC
Q 008642 487 VEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 487 ~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~ 553 (558)
+|+..|++||.||++||++|++.++.|.|.+... ++.+.|+|+|+|+||+++.++++|+||++..+
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~-~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~ 66 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIEED-DDHLSIEISDNGVGIPPEELEKLFEPFFTSDK 66 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEE-TTEEEEEEEESSSSTTHHHHHHHCSTTSHSSS
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEe-cCeEEEEEEeccccccccccccchhhcccccc
Confidence 6899999999999999999999889999999765 67799999999999999999999999987664
No 47
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.12 E-value=8.4e-09 Score=112.05 Aligned_cols=89 Identities=18% Similarity=0.136 Sum_probs=69.0
Q ss_pred HHHHhhcCCeEEEEecCCce--EEEECHHHHHHHHHHHHHHHhhccC---CCCEEEEEEEEecCCeEEEEEEecCCCCCH
Q 008642 464 RPLAHMQQRQVELSELSQSL--LVAVEEPALRQALSNLIEGALMRTQ---VGGKVEIVSAAAPAGDALVVIDDDGPDMHY 538 (558)
Q Consensus 464 ~~~a~~~~~~i~l~~~~~~~--~V~~D~~~L~qVL~NLI~NAlkyt~---~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~ 538 (558)
...+.+.+..+.++.....+ .-..+...+--++-|||+||++++- +++.|.+.+... ++.+.|+|.|+|||||+
T Consensus 398 ~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~-~~~lvieV~D~G~GI~~ 476 (537)
T COG3290 398 ISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDR-GDELVIEVADTGPGIPP 476 (537)
T ss_pred HHHHHHcCceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEec-CCEEEEEEeCCCCCCCh
Confidence 34454556666665422222 3567889999999999999999986 567888888644 66799999999999999
Q ss_pred hHHHhcccCCCCCCC
Q 008642 539 MVIIANFAAYSPPHP 553 (558)
Q Consensus 539 e~~~~IFepF~~~~~ 553 (558)
+.+++||+.=++++.
T Consensus 477 ~~~~~iFe~G~Stk~ 491 (537)
T COG3290 477 EVRDKIFEKGVSTKN 491 (537)
T ss_pred HHHHHHHhcCccccC
Confidence 999999998777654
No 48
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=98.76 E-value=3.2e-08 Score=79.28 Aligned_cols=62 Identities=18% Similarity=0.292 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008642 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEI-SYDIVEDIMVQGDRLRGTLQELQDAVF 369 (558)
Q Consensus 308 ~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~-~~~~~e~I~~~~~rL~~Ll~~L~d~l~ 369 (558)
+++|+++++|||||||++|.+++++|......++. .+++++.|..+++++.++++++.++..
T Consensus 2 ~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr 64 (68)
T PF00512_consen 2 KGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSR 64 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999883333333 488999999999999999999977543
No 49
>PRK10547 chemotaxis protein CheA; Provisional
Probab=98.73 E-value=2.8e-07 Score=104.97 Aligned_cols=101 Identities=21% Similarity=0.294 Sum_probs=79.4
Q ss_pred eeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEECHHHHHHH---HHHHHHHHhhcc------------CCCCEEE
Q 008642 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQA---LSNLIEGALMRT------------QVGGKVE 514 (558)
Q Consensus 450 vdL~elL~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qV---L~NLI~NAlkyt------------~~gg~I~ 514 (558)
+.+..++..+-..++..+...++.+++...... +.+|+..+.++ |.|||.||++|. +.+|.|.
T Consensus 343 ~p~~~~~~~~~rlvrdla~~~gk~v~l~~~g~~--~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~ 420 (670)
T PRK10547 343 MPMEYVFSRFPRLVRDLAGKLGKQVELTLVGSS--TELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLI 420 (670)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCc--eecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCCceE
Confidence 456777777777777777767788888754333 67899999998 679999999996 4568899
Q ss_pred EEEEEecCCeEEEEEEecCCCCCHhHH---------------------HhcccCCCCCCC
Q 008642 515 IVSAAAPAGDALVVIDDDGPDMHYMVI---------------------IANFAAYSPPHP 553 (558)
Q Consensus 515 I~v~~~~~~~v~I~V~D~G~GI~~e~~---------------------~~IFepF~~~~~ 553 (558)
|.+... ++.+.|.|.|+|.||+++.. .+||+||+++..
T Consensus 421 l~a~~~-~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e~~~lIF~pgfst~~ 479 (670)
T PRK10547 421 LSAEHQ-GGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEEVGMLIFAPGFSTAE 479 (670)
T ss_pred EEEEEc-CCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHHHHHHhhcCCccccc
Confidence 998654 66799999999999998654 469999877643
No 50
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.72 E-value=5.5e-08 Score=109.87 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=55.0
Q ss_pred ECHHHHHHHHHHHHHHHhhccCCCC---EEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCCCC
Q 008642 487 VEEPALRQALSNLIEGALMRTQVGG---KVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSPPH 552 (558)
Q Consensus 487 ~D~~~L~qVL~NLI~NAlkyt~~gg---~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~ 552 (558)
.|...|.++|.|||+||++|+..++ .|.|.+... ++.+.|.|.|||+||+++++.++|+||+++.
T Consensus 42 ~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~-g~~v~I~VeDNG~GIp~EdLp~IFerf~~tS 109 (795)
T PRK14868 42 SGARGLVTAVKEAVDNALDATEEAGILPDIYVEIEEV-GDYYRLVVEDNGPGITKEQIPKVFGKLLYGS 109 (795)
T ss_pred CCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEEC-CCEEEEEEEEcCCCCCHHHHHHHhhhhcccc
Confidence 4577899999999999999998765 688877532 4458999999999999999999999997543
No 51
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.55 E-value=1.3e-07 Score=104.62 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=56.4
Q ss_pred EEEECHHHHHHHHHHHHHHHhhccCCCC---EEEEEEEEe--cCCeEEEEEEecCCCCCHhHHHhcccCCCCCC
Q 008642 484 LVAVEEPALRQALSNLIEGALMRTQVGG---KVEIVSAAA--PAGDALVVIDDDGPDMHYMVIIANFAAYSPPH 552 (558)
Q Consensus 484 ~V~~D~~~L~qVL~NLI~NAlkyt~~gg---~I~I~v~~~--~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~ 552 (558)
-+..+...|.|++.|||+||++|++.++ .|.|.+... .++.+.|.|.|||+||+++++.++|++|+.+.
T Consensus 29 gf~~p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~S 102 (535)
T PRK04184 29 GFDNPARALYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGS 102 (535)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccc
Confidence 3445678999999999999999997655 677777542 23458999999999999999999999986543
No 52
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.51 E-value=2.2e-07 Score=101.73 Aligned_cols=70 Identities=14% Similarity=0.185 Sum_probs=58.3
Q ss_pred EEEECHHHHHHHHHHHHHHHhhccCCCC---EEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCCCCC
Q 008642 484 LVAVEEPALRQALSNLIEGALMRTQVGG---KVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 484 ~V~~D~~~L~qVL~NLI~NAlkyt~~gg---~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~ 553 (558)
-+..+...|.+++.|||+||++|+..++ .|.|.+.....+.+.|.|.|||+||+++++.++|++|+++..
T Consensus 21 Gf~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK 93 (488)
T TIGR01052 21 GYSGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSK 93 (488)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCc
Confidence 4567899999999999999999997655 678877543234478999999999999999999999987654
No 53
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=98.45 E-value=3.1e-05 Score=84.28 Aligned_cols=85 Identities=14% Similarity=0.228 Sum_probs=61.8
Q ss_pred eeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEECH---HHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCe
Q 008642 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEE---PALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGD 524 (558)
Q Consensus 448 e~vdL~elL~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~---~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~ 524 (558)
+.-++..-++++++.|.... +..+++.. ..+....++ -.+-||+.--+.||+||+. +.+|.|.+... +|.
T Consensus 440 ~e~~L~~AL~~~~~~f~~qt---g~~~~l~~--qlp~~~lpa~qqvHlLqIvREAlsNa~KHa~-As~i~V~~~~~-~g~ 512 (574)
T COG3850 440 QEAELPPALEQMLAEFSNQT---GITVTLDY--QLPPRALPAHQQVHLLQIVREALSNAIKHAQ-ASEIKVTVSQN-DGQ 512 (574)
T ss_pred ccCchHHHHHHHHHHHHhcc---CCeEEEec--cCCCCCCCHHHHHHHHHHHHHHHHHHHHhcc-cCeEEEEEEec-CCe
Confidence 44467777888888876543 45566664 222222343 3567899999999999986 47899988765 477
Q ss_pred EEEEEEecCCCCCHh
Q 008642 525 ALVVIDDDGPDMHYM 539 (558)
Q Consensus 525 v~I~V~D~G~GI~~e 539 (558)
+.+.|.|||+|||+.
T Consensus 513 ~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 513 VTLTVEDNGVGIDEA 527 (574)
T ss_pred EEEEEeeCCcCCCCc
Confidence 999999999999976
No 54
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.36 E-value=7.8e-05 Score=74.30 Aligned_cols=91 Identities=16% Similarity=0.210 Sum_probs=67.5
Q ss_pred eeeeHHHHHHHHHHHHHHHHhhcCCeEEEEe-cCCceEEEECH-HHHHHHHHHHHHHHhhccC---CCCEEEEEEEEecC
Q 008642 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSE-LSQSLLVAVEE-PALRQALSNLIEGALMRTQ---VGGKVEIVSAAAPA 522 (558)
Q Consensus 448 e~vdL~elL~~ll~~~~~~a~~~~~~i~l~~-~~~~~~V~~D~-~~L~qVL~NLI~NAlkyt~---~gg~I~I~v~~~~~ 522 (558)
..++...+++.+...+.+.. ....+.+.. .++.+.+..|. ..|.-|+.-|+.||+||.- ++|.|.|.+....+
T Consensus 79 ~~~~~~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~~~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~ 156 (221)
T COG3920 79 DTWDFASYLELLASNLFPSY--GGKDIRLILDSGPNVFLDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGD 156 (221)
T ss_pred ceEcHHHHHHHHHHHHHHhc--CCCCceEEEecCCceEECchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCC
Confidence 56788888888888888764 233344443 23334455553 4789999999999999985 37899999987645
Q ss_pred C-eEEEEEEecCCCCCHhH
Q 008642 523 G-DALVVIDDDGPDMHYMV 540 (558)
Q Consensus 523 ~-~v~I~V~D~G~GI~~e~ 540 (558)
+ ...+.|+|+|.|+|.+.
T Consensus 157 ~~~~~l~v~deg~G~~~~~ 175 (221)
T COG3920 157 GGRFLLTVWDEGGGPPVEA 175 (221)
T ss_pred CCeEEEEEEECCCCCCCCC
Confidence 5 38899999999999753
No 55
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.34 E-value=1.1e-06 Score=99.09 Aligned_cols=64 Identities=11% Similarity=0.195 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHhhccCCCC---EEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCCCC
Q 008642 489 EPALRQALSNLIEGALMRTQVGG---KVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSPPH 552 (558)
Q Consensus 489 ~~~L~qVL~NLI~NAlkyt~~gg---~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~ 552 (558)
...|.+++.|||+||++|+..++ .|.|.+.....+.+.|.|.|||+||+++.+.++|++|++++
T Consensus 34 ~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~atS 100 (659)
T PRK14867 34 LRSMTTIIHELVTNSLDACEEAEILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGS 100 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccccC
Confidence 34455999999999999987544 78888754323458899999999999999999999998754
No 56
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=98.33 E-value=2.2e-06 Score=72.39 Aligned_cols=65 Identities=23% Similarity=0.396 Sum_probs=57.4
Q ss_pred ECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCCCC
Q 008642 487 VEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSPPH 552 (558)
Q Consensus 487 ~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~ 552 (558)
+|...|.+++.|++.||++|...++.|.|.+... ++.+.|.|.|+|.||+++...++|.+|+...
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~-~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~ 65 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERD-GDHLEITVEDNGPGIPPEDLEKIFEPFFRTD 65 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEc-CCEEEEEEEeCCCCCCHHHHHHHhcCeEECC
Confidence 3778999999999999999998878899888654 5568999999999999999999999987655
No 57
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=98.31 E-value=2.2e-06 Score=78.01 Aligned_cols=62 Identities=15% Similarity=0.257 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHHHHhhcc---CCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCCCC
Q 008642 488 EEPALRQALSNLIEGALMRT---QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSPPH 552 (558)
Q Consensus 488 D~~~L~qVL~NLI~NAlkyt---~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~ 552 (558)
+...+..++.|++.||++|+ +.++.|.|.+... ++.+.|.|.|+|+||+ ...++|+||+...
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~-~~~~~i~I~D~G~gi~--~~~~~~~~~~~~~ 100 (137)
T TIGR01925 36 ELTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIE-DHEVYITVRDEGIGIE--NLEEAREPLYTSK 100 (137)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEe-CCEEEEEEEEcCCCcC--chhHhhCCCcccC
Confidence 45689999999999999986 2357888888654 6679999999999998 3678999998654
No 58
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=98.25 E-value=0.00012 Score=76.33 Aligned_cols=150 Identities=12% Similarity=0.130 Sum_probs=96.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHHhhhccCCCC
Q 008642 313 SNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYS 392 (558)
Q Consensus 313 a~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e~l~~l~~s~~~ 392 (558)
..+-.||-.-+|+|++-+.++++ ..++...++.+..|..-+-|+.+-++++..- +
T Consensus 308 RELHDeIGQnITAIr~Qa~ivkR-~~~~~q~kqaas~Ie~LslrI~~svrqLL~r----------L-------------- 362 (497)
T COG3851 308 RELHDEIGQNITAIRTQAGIVKR-AADNAQVKQAASLIEQLSLRIYDSVRQLLGR----------L-------------- 362 (497)
T ss_pred HHHHHHhcchHHHHHHHHHHHHh-ccCCHhHHhHHHHHHHHHHHHHHHHHHHHHh----------c--------------
Confidence 34445788899999999988866 4454444555555555555555555554221 0
Q ss_pred CchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHHhhcCC
Q 008642 393 HPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQR 472 (558)
Q Consensus 393 ~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~~~~~~a~~~~~ 472 (558)
. +.......+.+.+..+++.+.-. ++++
T Consensus 363 -----------------------------------------R---------P~~LDdL~l~qai~~l~~Em~~~--ergi 390 (497)
T COG3851 363 -----------------------------------------R---------PRQLDDLTLEQAIRSLLREMELE--ERGI 390 (497)
T ss_pred -----------------------------------------C---------CcccccccHHHHHHHHHHHhhhh--hcCe
Confidence 0 11235567888888888877543 3666
Q ss_pred eEEEEe-cCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHH
Q 008642 473 QVELSE-LSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVI 541 (558)
Q Consensus 473 ~i~l~~-~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~ 541 (558)
...+.- ..+...=..-+.-+.+++..+++|-+||+.. ..|+|..... +..+.++|+|||.|+|....
T Consensus 391 hcq~~~~~n~~~ldet~rvTLyRl~QE~LNNI~KHA~A-S~V~i~l~~~-~e~l~Lei~DdG~Gl~~~~~ 458 (497)
T COG3851 391 HCQLDWRINETALDETQRVTLYRLCQELLNNICKHADA-SAVTIQLWQQ-DERLMLEIEDDGSGLPPGSG 458 (497)
T ss_pred EEEeccccCcccCCcceeEeHHHHHHHHHHHHHhcccc-ceEEEEEeeC-CcEEEEEEecCCcCCCCCCC
Confidence 666653 1111111112336788999999999999865 6788888543 44489999999999998743
No 59
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.10 E-value=7.4e-06 Score=85.59 Aligned_cols=61 Identities=11% Similarity=0.181 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCCCCCC
Q 008642 490 PALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSPPHPT 554 (558)
Q Consensus 490 ~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~ 554 (558)
..+.+|+.|||+||+++.. ..|.|.+. .++...|.|.|||.||+++++.++|++|++.+..
T Consensus 21 ~~~~~~l~eLi~Na~dA~a--~~I~i~~~--~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~ 81 (312)
T TIGR00585 21 ERPASVVKELVENSLDAGA--TRIDVEIE--EGGLKLIEVSDNGSGIDKEDLPLACERHATSKIQ 81 (312)
T ss_pred hhHHHHHHHHHHHHHHCCC--CEEEEEEE--eCCEEEEEEEecCCCCCHHHHHHHhhCCCcCCCC
Confidence 4678999999999999854 57777773 2444569999999999999999999999986653
No 60
>PRK03660 anti-sigma F factor; Provisional
Probab=98.00 E-value=2.2e-05 Score=72.19 Aligned_cols=63 Identities=17% Similarity=0.277 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHHHhhccCC---CCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCCCCC
Q 008642 488 EEPALRQALSNLIEGALMRTQV---GGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 488 D~~~L~qVL~NLI~NAlkyt~~---gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~ 553 (558)
+...+.+++.|++.||++|... ++.|.|.+... ++.+.|.|.|+|+||++ ..+.|+||++..+
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~-~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~ 101 (146)
T PRK03660 36 ELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIE-EEELEITVRDEGKGIED--IEEAMQPLYTTKP 101 (146)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEC-CCEEEEEEEEccCCCCh--HHHhhCCCcccCC
Confidence 5678899999999999998642 36788887644 56799999999999986 5689999987554
No 61
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=97.99 E-value=2.7e-05 Score=59.90 Aligned_cols=59 Identities=25% Similarity=0.386 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008642 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAV 368 (558)
Q Consensus 309 ~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l 368 (558)
.++++.++||+||||++|.++++++... ..++...++++.+..+++++..+++++.++.
T Consensus 3 ~~~~~~i~Hel~~pl~~i~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 61 (66)
T smart00388 3 REFLANLSHELRTPLTAIRGYLELLEDT-ELSEEQREYLETILRSAERLLRLINDLLDLS 61 (66)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688899999999999999999998762 2233336778889999999999999887653
No 62
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.97 E-value=2.4e-05 Score=64.90 Aligned_cols=56 Identities=25% Similarity=0.437 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhhccCC-CCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCC
Q 008642 492 LRQALSNLIEGALMRTQV-GGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAY 548 (558)
Q Consensus 492 L~qVL~NLI~NAlkyt~~-gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF 548 (558)
|.+++.+|++||++|... ++.|.|.+... ++.+.|.|.|+|.||++..+.+.|.+|
T Consensus 1 l~~~~~~ll~Na~~~~~~~~~~v~i~~~~~-~~~~~v~i~d~g~g~~~~~~~~~~~~~ 57 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVERD-GDHLEIRVEDNGPGIPEEDLERIFERF 57 (103)
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEEEEec-CCEEEEEEEeCCCCCCHHHHHHHhhhh
Confidence 468999999999999875 67888887543 556999999999999999999999887
No 63
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=97.97 E-value=0.00095 Score=73.40 Aligned_cols=55 Identities=20% Similarity=0.299 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhhcc----CCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccC
Q 008642 492 LRQALSNLIEGALMRT----QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAA 547 (558)
Q Consensus 492 L~qVL~NLI~NAlkyt----~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFep 547 (558)
+.-++..|++||++|. .+|+.|.|.+... ++.+.+.|.|||+||+++....+.+.
T Consensus 351 p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~-~~~i~i~i~Dng~g~~~~~~~~~~~~ 409 (456)
T COG2972 351 PKLVLQPLVENAIEHGIEPKRPGGSIAISAKKQ-DDVIQISISDNGPGIDEEKLEGLSTK 409 (456)
T ss_pred chHHHhHHHHHHHHHhcccCCCCCEEEEEEEEc-CCEEEEEEeeCCCCCChhHHHHHHhh
Confidence 3567899999999998 4678999998755 66799999999999999887766543
No 64
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=97.90 E-value=6.6e-05 Score=57.13 Aligned_cols=60 Identities=22% Similarity=0.362 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 008642 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDA 367 (558)
Q Consensus 308 ~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~ 367 (558)
..+++..++||+||||++|.++++.+.+.....+...+.++.+...++++..+++++..+
T Consensus 4 ~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 63 (65)
T cd00082 4 KGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDL 63 (65)
T ss_pred HHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999999999999999988765545556677788888899999988888653
No 65
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=97.87 E-value=5.4e-05 Score=71.50 Aligned_cols=65 Identities=17% Similarity=0.300 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHHHHhhccCC---CCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCCCCC
Q 008642 488 EEPALRQALSNLIEGALMRTQV---GGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 488 D~~~L~qVL~NLI~NAlkyt~~---gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~ 553 (558)
+...+.-++..++.||++|... ++.|.|.+... ++.+.|.|+|+|+||+++.....|.||++..+
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~-~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~ 106 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIY-EDRLEIVVADNGVSFDYETLKSKLGPYDISKP 106 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEE-CCEEEEEEEECCcCCChHHhccccCCCCCCCc
Confidence 4466888999999999999854 36788888654 67799999999999999999999999876543
No 66
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=97.78 E-value=0.0058 Score=66.18 Aligned_cols=88 Identities=16% Similarity=0.163 Sum_probs=57.6
Q ss_pred ceeeeHHHHHHHHHHHHHHHHhhcCCeEEEEe-cCCce-EEEECHHHHHHHHHHHHHHHhhccC----CCCEEEEEEEEe
Q 008642 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSE-LSQSL-LVAVEEPALRQALSNLIEGALMRTQ----VGGKVEIVSAAA 520 (558)
Q Consensus 447 ~e~vdL~elL~~ll~~~~~~a~~~~~~i~l~~-~~~~~-~V~~D~~~L~qVL~NLI~NAlkyt~----~gg~I~I~v~~~ 520 (558)
.+.|+|.+-++.+-+-++-.-..-+-.+++.. .++.. .+..- .-++.=|++||+||.- .+|.|.|.+...
T Consensus 414 ~~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~~~iP----~filQPLVENAIKHG~~~~~~~g~V~I~V~~~ 489 (557)
T COG3275 414 QEIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQVQIP----SFILQPLVENAIKHGISQLKDTGRVTISVEKE 489 (557)
T ss_pred ceEeehHHHHHHHHHHHHHHHHhcCCceEEEEecCHHHhhccCc----hhhhhHHHHHHHHhcccchhcCCceEEEEEEe
Confidence 36789999888887765433222222233332 11111 22222 1356778999999963 568899999765
Q ss_pred cCCeEEEEEEecCCCCCHh
Q 008642 521 PAGDALVVIDDDGPDMHYM 539 (558)
Q Consensus 521 ~~~~v~I~V~D~G~GI~~e 539 (558)
++.+.|.|.|||-||+++
T Consensus 490 -d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 490 -DADLRIEVEDNGGLIQPD 507 (557)
T ss_pred -CCeEEEEEecCCCCcCCC
Confidence 666999999999999985
No 67
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=97.73 E-value=0.0044 Score=65.88 Aligned_cols=54 Identities=15% Similarity=0.121 Sum_probs=45.6
Q ss_pred ECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHH
Q 008642 487 VEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVII 542 (558)
Q Consensus 487 ~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~ 542 (558)
.-...+.+++.--|.||+||+.. .++.|.+... ++.+.+.|.|||.|++.+...
T Consensus 275 ~~e~~l~rivQEaltN~~rHa~A-~~v~V~l~~~-~~~l~l~V~DnG~Gf~~~~~~ 328 (365)
T COG4585 275 EAEDALFRIVQEALTNAIRHAQA-TEVRVTLERT-DDELRLEVIDNGVGFDPDKEG 328 (365)
T ss_pred hHHHHHHHHHHHHHHHHHhccCC-ceEEEEEEEc-CCEEEEEEEECCcCCCccccC
Confidence 34678999999999999999975 6788888755 666999999999999987643
No 68
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.65 E-value=0.0023 Score=73.89 Aligned_cols=91 Identities=21% Similarity=0.322 Sum_probs=72.5
Q ss_pred eeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEECHHHHHHH---HHHHHHHHhhcc------------CCCCE
Q 008642 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQA---LSNLIEGALMRT------------QVGGK 512 (558)
Q Consensus 448 e~vdL~elL~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qV---L~NLI~NAlkyt------------~~gg~ 512 (558)
+.+.+..++...=...+.++.+-++.+++...... +..|+.-|.++ |.+||.||+.|. ++.|+
T Consensus 388 RMvP~~~vf~RfpR~VRdla~~lgK~V~L~ieG~~--telDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~ 465 (716)
T COG0643 388 RMVPFEQVFSRFPRMVRDLARKLGKQVELVIEGED--TELDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGT 465 (716)
T ss_pred hceeHHHHHhhccHHHHHHHHHhCCeeEEEEecCC--eeehHHHHHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcce
Confidence 45667777777777788888888889999864443 56788877776 899999999996 35689
Q ss_pred EEEEEEEecCCeEEEEEEecCCCCCHhHH
Q 008642 513 VEIVSAAAPAGDALVVIDDDGPDMHYMVI 541 (558)
Q Consensus 513 I~I~v~~~~~~~v~I~V~D~G~GI~~e~~ 541 (558)
|++++... ++.+.|.|+|+|.||+.+.+
T Consensus 466 I~L~A~~~-gn~ivIev~DDG~Gid~ekI 493 (716)
T COG0643 466 ITLSAYHE-GNNIVIEVSDDGAGIDREKI 493 (716)
T ss_pred EEEEEEcC-CCeEEEEEeeCCCCCCHHHH
Confidence 99999765 77799999999999976543
No 69
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=97.54 E-value=0.0003 Score=66.43 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHhhccCC---CCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCCCC
Q 008642 489 EPALRQALSNLIEGALMRTQV---GGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSPPH 552 (558)
Q Consensus 489 ~~~L~qVL~NLI~NAlkyt~~---gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~ 552 (558)
...+.-++..++.||++|+.. ++.|.|.+... ++.+.|.|+|+|+||+++...+.|.|+....
T Consensus 40 ~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~-~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~ 105 (159)
T TIGR01924 40 IEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIY-EDRLEIIVSDQGDSFDMDTFKQSLGPYDGSE 105 (159)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEe-CCEEEEEEEEcccccCchhhccccCCCCCCC
Confidence 345888999999999999843 46888888755 6679999999999999998888888876543
No 70
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=97.45 E-value=0.00015 Score=77.69 Aligned_cols=63 Identities=16% Similarity=0.242 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCC---EEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCC
Q 008642 488 EEPALRQALSNLIEGALMRTQVGG---KVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSP 550 (558)
Q Consensus 488 D~~~L~qVL~NLI~NAlkyt~~gg---~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~ 550 (558)
-...|.+++.-|++|+++++...| .|.|.+.....+.+.+.|.|||||||.+...++|-.+.-
T Consensus 33 p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~Ly 98 (538)
T COG1389 33 PIRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLY 98 (538)
T ss_pred chhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhc
Confidence 457899999999999999998665 577777655566699999999999999999999987643
No 71
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=97.11 E-value=0.00011 Score=85.90 Aligned_cols=107 Identities=20% Similarity=0.242 Sum_probs=78.8
Q ss_pred CceeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCC-ceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEec---
Q 008642 446 GIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQ-SLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAP--- 521 (558)
Q Consensus 446 ~~e~vdL~elL~~ll~~~~~~a~~~~~~i~l~~~~~-~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~--- 521 (558)
.-.++++..++..++..+.+.+..++..+.+..+.. +-.+.+|+..++||+.|++.||+|++..| .|.+.+....
T Consensus 288 ~~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~~~~~~p~~v~~de~~~~qv~~n~v~naik~t~~~-~i~~~~~~~~~~~ 366 (786)
T KOG0519|consen 288 VAKRFDLRTLLNFVISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIKFTHAG-HLEESVIAREELS 366 (786)
T ss_pred eeeecchHhhhhhhhhhhHHHhhcCCeEEEEecCCCCcceeeccceeeeeeehhhccceecccccc-eEEEEEEeehhcc
Confidence 347899999999999999999866555444444333 23788999999999999999999998764 4444332100
Q ss_pred -----------------------------------C---------CeEEEEEEecCCCCCHhHHHh-cccCCCCCCC
Q 008642 522 -----------------------------------A---------GDALVVIDDDGPDMHYMVIIA-NFAAYSPPHP 553 (558)
Q Consensus 522 -----------------------------------~---------~~v~I~V~D~G~GI~~e~~~~-IFepF~~~~~ 553 (558)
. -.-.+.+.|+|.||+.+.+.. +|.+|-...+
T Consensus 367 ~~~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~ 443 (786)
T KOG0519|consen 367 ESNDVLLRAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADP 443 (786)
T ss_pred hhhHHHHhhhhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhcccc
Confidence 0 012467899999999999888 9998865443
No 72
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=97.09 E-value=0.0013 Score=75.19 Aligned_cols=58 Identities=17% Similarity=0.236 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCCCC
Q 008642 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSPPH 552 (558)
Q Consensus 491 ~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~ 552 (558)
.+..|+..||+||+++. ...|.|.+ ..++...|+|.|||.||+.++...+|.++.+.+
T Consensus 22 ~~~svvkElveNsiDAg--at~I~v~i--~~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsK 79 (617)
T PRK00095 22 RPASVVKELVENALDAG--ATRIDIEI--EEGGLKLIRVRDNGCGISKEDLALALARHATSK 79 (617)
T ss_pred CHHHHHHHHHHHHHhCC--CCEEEEEE--EeCCeEEEEEEEcCCCCCHHHHHHHhhccCCCC
Confidence 45789999999999974 46788888 335557899999999999999999999886543
No 73
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=97.05 E-value=0.0033 Score=66.14 Aligned_cols=110 Identities=25% Similarity=0.243 Sum_probs=80.0
Q ss_pred eeeeHHHHHHHHHHHHHHHHhhcC-CeEEEEecC-CceEEE-ECHHHHHHHHHHHHHHHhhccC----CCC----EEEEE
Q 008642 448 RPCNVSDVLGDLFEAVRPLAHMQQ-RQVELSELS-QSLLVA-VEEPALRQALSNLIEGALMRTQ----VGG----KVEIV 516 (558)
Q Consensus 448 e~vdL~elL~~ll~~~~~~a~~~~-~~i~l~~~~-~~~~V~-~D~~~L~qVL~NLI~NAlkyt~----~gg----~I~I~ 516 (558)
..|++.++|+++.+..+-++...= ..-++...+ ...... .=|.-|.-++.-|+.||+++|- ..+ .|.|.
T Consensus 214 ~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~~~~vyvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~ 293 (414)
T KOG0787|consen 214 PRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNALSFTVYVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVT 293 (414)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCcccccCccccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 679999999999999887664321 112222211 111222 3477899999999999999982 222 37777
Q ss_pred EEEecCCeEEEEEEecCCCCCHhHHHhcccCCCCCCCCCCCC
Q 008642 517 SAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSPPHPTPILD 558 (558)
Q Consensus 517 v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~~~~~ 558 (558)
+.. .+..+.|.|+|.|-||+.+..+++|.=-|++.|.|-.|
T Consensus 294 V~~-gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d 334 (414)
T KOG0787|consen 294 VAK-GDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSD 334 (414)
T ss_pred Eec-CCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCC
Confidence 743 35558999999999999999999999889999988655
No 74
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A.
Probab=96.70 E-value=0.021 Score=49.85 Aligned_cols=100 Identities=18% Similarity=0.263 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHhhhhhcCCceEEEEEecCCcCccCceeEEEEEeeCCCCCcceeeeeccccCCcchhHHHHh-hhc-cc
Q 008642 116 DFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFNMPAGLRAAEAA-LSS-QQ 193 (558)
Q Consensus 116 df~~l~~~ql~~l~~~~~~~a~~~vYl~~~~~~~~~~~~L~~v~~yp~~~~~~~~~~~g~~~i~~~~~~a~~~-~~~-~~ 193 (558)
|..++++.-++.+.+.++.+ ..++|+.+ .+..++..+..|.....-...+..+...+-......+.. ... ..
T Consensus 1 dl~~l~~~i~~~l~~~~~~~-~~~l~~~d-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 74 (129)
T PF13492_consen 1 DLDELLERILELLRELLGAD-RAALFLLD-----EDGNRLRVVAGWGGDPRLSESLPEDDPLIGRALETGEPVSVPDIDE 74 (129)
T ss_dssp -HHHHHHHHHHHHHHHST-S-EEEEEEEE-----TTCECEEEEEEESS-GCGHHCEETTSHHHHHHHHHTS-EEESTCCC
T ss_pred CHHHHHHHHHHHHHHHhCCC-EEEEEEEE-----CCCCEEEEEEEeCCCccccccCCCCccHHHHHHhhCCeEEeccccc
Confidence 56789999999999999666 55699976 344678888888332211001111110000000000000 000 01
Q ss_pred ccccCCCceEEEeeeeCCeEEEEEEEec
Q 008642 194 VQVVPEQRAVVFPMVKHPFVVGFLVAEL 221 (558)
Q Consensus 194 ~~~~~~~~~lvlPL~~~~~vvGvLv~e~ 221 (558)
....+....+++||..+++++|+|++..
T Consensus 75 ~~~~~~~s~~~vPl~~~~~~~Gvl~~~~ 102 (129)
T PF13492_consen 75 RDFLGIRSLLVVPLRSRDRVIGVLCLDS 102 (129)
T ss_dssp -TTTTTCEEEEEEEEETTEEEEEEEEEE
T ss_pred ccCCCCCEEEEEEEeECCEEEEEEEEEE
Confidence 1123456789999999999999999983
No 75
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=96.37 E-value=0.0025 Score=58.49 Aligned_cols=53 Identities=23% Similarity=0.367 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccC
Q 008642 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAA 547 (558)
Q Consensus 493 ~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFep 547 (558)
..+|.-||+||+++.. ..|.|.+.....+.-.|.|.|||.||+.+.+.+.|..
T Consensus 4 ~~al~ElI~Ns~DA~a--~~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~~~~~ 56 (137)
T PF13589_consen 4 EDALRELIDNSIDAGA--TNIKISIDEDKKGERYIVIEDNGEGMSREDLESFFRI 56 (137)
T ss_dssp THHHHHHHHHHHHHHH--HHEEEEEEEETTTTTEEEEEESSS---HHHHHHHTTC
T ss_pred HHHHHHHHHHHHHccC--CEEEEEEEcCCCCCcEEEEEECCcCCCHHHHHHhccc
Confidence 4678888999998763 3477777544334467999999999999999997653
No 76
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=96.37 E-value=0.012 Score=52.46 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHhhccCCC---CEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhc
Q 008642 489 EPALRQALSNLIEGALMRTQVG---GKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIAN 544 (558)
Q Consensus 489 ~~~L~qVL~NLI~NAlkyt~~g---g~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~I 544 (558)
...+.-++.-++.||++|+..+ +.|.|.+... .+.+.|.|.|+|+|+++.....-
T Consensus 29 ~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~-~~~l~i~v~D~G~~~d~~~~~~~ 86 (125)
T PF13581_consen 29 RDDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVD-PDRLRISVRDNGPGFDPEQLPQP 86 (125)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEc-CCEEEEEEEECCCCCChhhccCc
Confidence 4578889999999999998754 5788887544 66699999999999998765443
No 77
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=96.09 E-value=0.0077 Score=68.96 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCCCC
Q 008642 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSPPH 552 (558)
Q Consensus 493 ~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~ 552 (558)
.-|+.-||+|||++.. ..|.|.+ +.+|.-.|.|.|||.||+++++.-.+.++.+.+
T Consensus 25 aSVVKELVENSlDAGA--t~I~I~v--e~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 25 ASVVKELVENSLDAGA--TRIDIEV--EGGGLKLIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred HHHHHHHHhcccccCC--CEEEEEE--ccCCccEEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 5789999999999853 5788887 434445699999999999999999999986643
No 78
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.07 E-value=0.17 Score=56.81 Aligned_cols=145 Identities=8% Similarity=-0.017 Sum_probs=76.8
Q ss_pred ccCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCcCccCceeEEEEEeeCCCCCcceeeeecccc------------C
Q 008642 111 VLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFN------------M 178 (558)
Q Consensus 111 ~~~S~df~~l~~~ql~~l~~~~~~~a~~~vYl~~~~~~~~~~~~L~~v~~yp~~~~~~~~~~~g~~~------------i 178 (558)
+..+.|+..+-+..++.+.+.++.+ ..++|+... ++...+.....++........+.+|+.. +
T Consensus 14 l~~~~dl~~lL~~il~~l~~~l~a~-~~~I~L~d~----~~~~l~~aa~g~~~~~~~~~~~~~~~gi~g~v~~~~~pvii 88 (534)
T TIGR01817 14 LSAPTRLEKTLANVLNVLSNDLGMR-HGLITLSDS----EGEPLLVAAIGWSEEGFAPIRYRVGEGAIGQIVATGNSLVV 88 (534)
T ss_pred HhccCCHHHHHHHHHHHHHHhcCCC-EEEEEEECC----CCCEEEEEEeCCChhhcccccccCCccHHHHHHhcCCeEEe
Confidence 4457789999999999999999555 445888751 1222222222222211111111111110 1
Q ss_pred CcchhHHHHhhhcccccccCCCceEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCCcccc
Q 008642 179 PAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESH 258 (558)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~lvlPL~~~~~vvGvLv~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 258 (558)
+.... ..................+++||+.+|.++|+|++.. . ..+..
T Consensus 89 ~Dv~~-d~~~~~~~~~~~~~~~S~l~VPL~~~g~viGvL~v~s-----------~-----------~~~~~--------- 136 (534)
T TIGR01817 89 PDVAA-EPLFLDRLSLYDPGPVPFIGVPIKADSETIGVLAADR-----------D-----------FRSRE--------- 136 (534)
T ss_pred ccccc-CchhhhccccccCCcceEEEEEEcCCCEEEEEEEEEe-----------c-----------ccccc---------
Confidence 11100 0001010111122346789999999999999999983 1 11111
Q ss_pred hhhhhhhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008642 259 AIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSW 306 (558)
Q Consensus 259 ~iq~~~~~~~~~~~f~~~qr~~~~~ia~~lalA~~l~qr~~~lqq~~~ 306 (558)
|++++...+..+|..++.+....+.....++...
T Consensus 137 --------------ft~~d~~lL~~lA~~ia~aI~~~~~~~~~~~~l~ 170 (534)
T TIGR01817 137 --------------RLEEEVRFLEMVANLIGQTVRLHRLVAQRRERLI 170 (534)
T ss_pred --------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556777777888888888765444443443333
No 79
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=95.74 E-value=1.1 Score=47.05 Aligned_cols=87 Identities=14% Similarity=0.143 Sum_probs=58.7
Q ss_pred eeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCce-EEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEE
Q 008642 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALV 527 (558)
Q Consensus 449 ~vdL~elL~~ll~~~~~~a~~~~~~i~l~~~~~~~-~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I 527 (558)
..-|..-++-+++.|+ ...+..+.+.....+- ...--...|.+|...-+.|-=+|+. ..+|.|.+... .+.+.+
T Consensus 319 DLGL~aALe~L~~~f~---~~tg~~itle~~~~p~~l~~e~~talyRv~QEaltNIErHa~-Atrv~ill~~~-~d~vql 393 (459)
T COG4564 319 DLGLTAALEALLEDFK---ERTGIEITLEFDTQPGKLKPEVATALYRVVQEALTNIERHAG-ATRVTILLQQM-GDMVQL 393 (459)
T ss_pred hhhHHHHHHHHHHHhh---hccCeEEEEEecCCcccCCcHHHHHHHHHHHHHHHHHHhhcC-CeEEEEEeccC-CcceEE
Confidence 3445666777777766 2345555555322221 2222346889999999999999983 46889988543 556999
Q ss_pred EEEecCCCCCHhH
Q 008642 528 VIDDDGPDMHYMV 540 (558)
Q Consensus 528 ~V~D~G~GI~~e~ 540 (558)
.|+|||+|++...
T Consensus 394 ~vrDnG~GF~~~~ 406 (459)
T COG4564 394 MVRDNGVGFSVKE 406 (459)
T ss_pred EEecCCCCccchh
Confidence 9999999998654
No 80
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=95.58 E-value=0.037 Score=51.65 Aligned_cols=62 Identities=18% Similarity=0.243 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHHHhhccCC----CCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCCCC
Q 008642 488 EEPALRQALSNLIEGALMRTQV----GGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSPPH 552 (558)
Q Consensus 488 D~~~L~qVL~NLI~NAlkyt~~----gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~ 552 (558)
+-..++-++.-++.||++|+.. .|.|.|.+... ++.+.+.|+|.|+||.. ....+.|-+...
T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~-~~~~~i~i~D~G~~~~~--~~~~~~~~~~~~ 102 (146)
T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLD-DGKLEIRIWDQGPGIED--LEESLGPGDTTA 102 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEc-CCeEEEEEEeCCCCCCC--HHHhcCCCCCCC
Confidence 4567788888888888888743 47899988765 66799999999988764 445566654333
No 81
>PF14501 HATPase_c_5: GHKL domain
Probab=94.86 E-value=0.084 Score=45.49 Aligned_cols=47 Identities=17% Similarity=0.284 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHHHHhhccCC---CCEEEEEEEEecCCeEEEEEEecCCC
Q 008642 488 EEPALRQALSNLIEGALMRTQV---GGKVEIVSAAAPAGDALVVIDDDGPD 535 (558)
Q Consensus 488 D~~~L~qVL~NLI~NAlkyt~~---gg~I~I~v~~~~~~~v~I~V~D~G~G 535 (558)
+...|..+|.||++||++++.. ...|.|.+... ++.+.|.|.+.-.+
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~-~~~~~i~i~N~~~~ 51 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYEDKRFISISIREE-NGFLVIIIENSCEK 51 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEec-CCEEEEEEEECCCC
Confidence 5667889999999999999854 55788888654 67789999988554
No 82
>PRK14083 HSP90 family protein; Provisional
Probab=94.74 E-value=0.042 Score=62.50 Aligned_cols=51 Identities=18% Similarity=0.311 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhccCC--------CCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhccc
Q 008642 494 QALSNLIEGALMRTQV--------GGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFA 546 (558)
Q Consensus 494 qVL~NLI~NAlkyt~~--------gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFe 546 (558)
-.|.+||.||.++... .+.|.|.+. . .+...|.|.|||+||+.++..+.|-
T Consensus 26 iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-d-~~~~~l~I~DnGiGmt~eel~~~l~ 84 (601)
T PRK14083 26 VYVRELLQNAVDAITARRALDPTAPGRIRIELT-D-AGGGTLIVEDNGIGLTEEEVHEFLA 84 (601)
T ss_pred HHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-c-CCCcEEEEEeCCCCCCHHHHHHHHh
Confidence 5688999999888532 246777763 2 3346799999999999999988763
No 83
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=94.35 E-value=0.029 Score=64.33 Aligned_cols=58 Identities=14% Similarity=0.288 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHHHhhccCCC--CEEEEEEEEecCCeEEEEEEecCCCCCHhHHHh--------cccCCC
Q 008642 488 EEPALRQALSNLIEGALMRTQVG--GKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIA--------NFAAYS 549 (558)
Q Consensus 488 D~~~L~qVL~NLI~NAlkyt~~g--g~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~--------IFepF~ 549 (558)
+...+..++.-||+||++....| ..|.|.+ ..++ .|+|+|||+|||.+.... +|..+.
T Consensus 34 ~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i--~~dg--~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lh 101 (631)
T PRK05559 34 DTRGLHHLVQEVIDNSVDEALAGHGKRIEVTL--HADG--SVSVRDNGRGIPVGIHPEEGKSGVEVILTKLH 101 (631)
T ss_pred CCchhhhhhhhhhccccchhhcCCCCEEEEEE--eCCC--cEEEEEcCCCCCcccccccCCcchheeeeecc
Confidence 56788999999999999875544 4788777 3344 599999999999998888 887643
No 84
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3',5'-cyclic phosphodiesterase (3.1.4.17 from EC) catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.; GO: 0005515 protein binding; PDB: 2Y8H_A 3DBA_B 3CI6_A 3E0Y_B 2W3G_B 2W3D_A 2W3E_A 2Y79_B 2W3H_A 2W3F_A ....
Probab=94.01 E-value=0.55 Score=42.09 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=21.4
Q ss_pred CCCceEEEeeeeCCeEEEEEEEec
Q 008642 198 PEQRAVVFPMVKHPFVVGFLVAEL 221 (558)
Q Consensus 198 ~~~~~lvlPL~~~~~vvGvLv~e~ 221 (558)
.-...+++||..+|.++|+|.+..
T Consensus 105 ~~~s~l~vPi~~~g~~~G~l~l~~ 128 (154)
T PF01590_consen 105 GVRSYLCVPIISGGRLIGVLSLYR 128 (154)
T ss_dssp TESEEEEEEEEETTEEEEEEEEEE
T ss_pred cCceeeEeeeecccCcEEEEEEEE
Confidence 446799999999999999999994
No 85
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=93.80 E-value=1.3 Score=39.30 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=20.6
Q ss_pred cCCCceEEEeeeeCCeEEEEEEEe
Q 008642 197 VPEQRAVVFPMVKHPFVVGFLVAE 220 (558)
Q Consensus 197 ~~~~~~lvlPL~~~~~vvGvLv~e 220 (558)
..-...+++||+.+++++|+|.+.
T Consensus 98 ~~~~s~l~vPl~~~~~~~Gvl~l~ 121 (148)
T PF13185_consen 98 PGIRSILCVPLRSGGEVIGVLSLY 121 (148)
T ss_dssp TT-SEEEEEEEEETTEEEEEEEEE
T ss_pred ccCCEEEEEEEeECCEEEEEEEEe
Confidence 344579999999999999999988
No 86
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Probab=93.62 E-value=2.7 Score=35.61 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.3
Q ss_pred CCceEEEeeeeCCeEEEEEEEec
Q 008642 199 EQRAVVFPMVKHPFVVGFLVAEL 221 (558)
Q Consensus 199 ~~~~lvlPL~~~~~vvGvLv~e~ 221 (558)
-...+++||..++.++|++++..
T Consensus 91 ~~s~~~~Pl~~~~~~~G~l~~~~ 113 (149)
T smart00065 91 VRSFLAVPLVADGELVGVLALHN 113 (149)
T ss_pred eeeEEEeeeeecCEEEEEEEEEe
Confidence 35689999999999999999983
No 87
>PRK05218 heat shock protein 90; Provisional
Probab=93.39 E-value=0.11 Score=59.46 Aligned_cols=52 Identities=23% Similarity=0.226 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhccC----------------CCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCC
Q 008642 495 ALSNLIEGALMRTQ----------------VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYS 549 (558)
Q Consensus 495 VL~NLI~NAlkyt~----------------~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~ 549 (558)
.|.-||.||.++.. ....|.|.+ ..++ -.|.|.|||.||+.++....|...+
T Consensus 30 ~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~--d~~~-~~i~I~DnG~GMt~eel~~~l~~ia 97 (613)
T PRK05218 30 FLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISF--DKEA-RTLTISDNGIGMTREEVIENLGTIA 97 (613)
T ss_pred HHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEE--cCCC-CeEEEEECCCCCCHHHHHHHHHhhc
Confidence 46777778777731 224555555 4333 3599999999999999998775443
No 88
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=92.54 E-value=0.11 Score=59.61 Aligned_cols=50 Identities=12% Similarity=0.312 Sum_probs=38.7
Q ss_pred ECHHHHHHHHHHHHHHHhhccCC--CCEEEEEEEEecCCeEEEEEEecCCCCCHhH
Q 008642 487 VEEPALRQALSNLIEGALMRTQV--GGKVEIVSAAAPAGDALVVIDDDGPDMHYMV 540 (558)
Q Consensus 487 ~D~~~L~qVL~NLI~NAlkyt~~--gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~ 540 (558)
.+...|..++.-||+||++-... ...|.|.+. .++ .|+|+|||.|||.+.
T Consensus 33 ~~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~--~~g--~I~V~DnG~GIp~~~ 84 (638)
T PRK05644 33 TGERGLHHLVYEIVDNSIDEALAGYCDHIEVTIN--EDG--SITVTDNGRGIPVDI 84 (638)
T ss_pred CChhhHHhhhHHhhhcccccccCCCCCEEEEEEe--CCC--cEEEEEeCccccCCc
Confidence 45678899999999999984333 357888883 344 699999999999873
No 89
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=92.24 E-value=0.12 Score=59.47 Aligned_cols=49 Identities=12% Similarity=0.316 Sum_probs=38.1
Q ss_pred ECHHHHHHHHHHHHHHHhhccCC--CCEEEEEEEEecCCeEEEEEEecCCCCCHh
Q 008642 487 VEEPALRQALSNLIEGALMRTQV--GGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (558)
Q Consensus 487 ~D~~~L~qVL~NLI~NAlkyt~~--gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e 539 (558)
.++..|.+++.-||+||++-... ...|.|.+. .++. |+|+|||.|||.+
T Consensus 26 ~~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~--~~g~--I~V~DnG~GIp~~ 76 (654)
T TIGR01059 26 TGETGLHHLVYEVVDNSIDEAMAGYCDTINVTIN--DDGS--VTVEDNGRGIPVD 76 (654)
T ss_pred CCcchHHhhhHHhhhccccccccCCCCEEEEEEe--CCCc--EEEEEeCCCcCcc
Confidence 35578999999999999984333 367888883 3443 9999999999986
No 90
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=92.23 E-value=0.23 Score=57.43 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=33.3
Q ss_pred HHHHHHHHhhccC--------------CCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcc
Q 008642 496 LSNLIEGALMRTQ--------------VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANF 545 (558)
Q Consensus 496 L~NLI~NAlkyt~--------------~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IF 545 (558)
|.-||+||.++.. .++.+.|.+... ++...|.|.|||+||+.+++.+-|
T Consensus 30 lRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d-~~~~~L~I~DnGiGMt~edl~~~L 92 (701)
T PTZ00272 30 LRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPD-KENKTLTVEDNGIGMTKADLVNNL 92 (701)
T ss_pred HHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEc-CCCCEEEEEECCCCCCHHHHHHHh
Confidence 5556777766631 234566766544 334679999999999998876655
No 91
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=91.31 E-value=0.22 Score=55.34 Aligned_cols=54 Identities=20% Similarity=0.364 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhccCCCCEEEEEEEEecCCe-EEEEEEecCCCCCHhHHHhcccCCCCCC
Q 008642 494 QALSNLIEGALMRTQVGGKVEIVSAAAPAGD-ALVVIDDDGPDMHYMVIIANFAAYSPPH 552 (558)
Q Consensus 494 qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~-v~I~V~D~G~GI~~e~~~~IFepF~~~~ 552 (558)
-++.-||+|++++. ...|.|.+ . +|+ -.+.|+|||.||..++..-+.++|.+.+
T Consensus 30 NAlKEliENSLDA~--ST~I~V~v--k-~GGLKLlQisDnG~GI~reDl~ilCeRftTSK 84 (694)
T KOG1979|consen 30 NALKELIENSLDAN--STSIDVLV--K-DGGLKLLQISDNGSGIRREDLPILCERFTTSK 84 (694)
T ss_pred HHHHHHHhccccCC--CceEEEEE--e-cCCeEEEEEecCCCccchhhhHHHHHHhhhhh
Confidence 46788999999884 35688877 4 555 6788999999999999999999997654
No 92
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=91.04 E-value=9.6 Score=44.33 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=19.0
Q ss_pred CceEEEeeeeCCeEEEEEEEe
Q 008642 200 QRAVVFPMVKHPFVVGFLVAE 220 (558)
Q Consensus 200 ~~~lvlPL~~~~~vvGvLv~e 220 (558)
..++++||+.++.++|+|.+.
T Consensus 295 ~s~l~vPL~~~~~v~GvL~l~ 315 (686)
T PRK15429 295 QTLCLLPLMSGDTMLGVLKLA 315 (686)
T ss_pred eEEEEEeEEECCEEEEEEEEe
Confidence 467899999999999999887
No 93
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=90.14 E-value=0.27 Score=57.40 Aligned_cols=47 Identities=15% Similarity=0.354 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhhccCCC--CEEEEEEEEecCCeEEEEEEecCCCCCHhH
Q 008642 490 PALRQALSNLIEGALMRTQVG--GKVEIVSAAAPAGDALVVIDDDGPDMHYMV 540 (558)
Q Consensus 490 ~~L~qVL~NLI~NAlkyt~~g--g~I~I~v~~~~~~~v~I~V~D~G~GI~~e~ 540 (558)
.-|..++.-||+||++-.-.| ..|.|.+ ..++ .|+|+|||.|||.+.
T Consensus 36 ~GLhhlv~EivdNaiDE~~AG~a~~I~V~i--~~dg--sIsV~DnGrGIPvd~ 84 (756)
T PRK14939 36 TGLHHMVYEVVDNAIDEALAGHCDDITVTI--HADG--SVSVSDNGRGIPTDI 84 (756)
T ss_pred cchhhhhhHhhcccccccccCCCCEEEEEE--cCCC--eEEEEEcCCcccCCc
Confidence 578889999999999733333 6788888 3344 599999999999874
No 94
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=90.09 E-value=0.37 Score=54.56 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=22.3
Q ss_pred EEEEEEEEecCCeEEEEEEecCCCCCHhHHHh
Q 008642 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMVIIA 543 (558)
Q Consensus 512 ~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~ 543 (558)
.+.|++..+ ++.-+++|.|||+||..++...
T Consensus 62 ~~~I~i~~D-k~~kTLtI~DNGIGMT~~Ev~~ 92 (623)
T COG0326 62 DLRIRISFD-KDNKTLTISDNGIGMTKDEVIE 92 (623)
T ss_pred CceEEEEEc-ccCCEEEEEeCCCCCCHHHHHH
Confidence 455665444 3335799999999999988654
No 95
>COG1956 GAF domain-containing protein [Signal transduction mechanisms]
Probab=89.18 E-value=6 Score=37.50 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.2
Q ss_pred CCceEEEeeeeCCeEEEEEEEe
Q 008642 199 EQRAVVFPMVKHPFVVGFLVAE 220 (558)
Q Consensus 199 ~~~~lvlPL~~~~~vvGvLv~e 220 (558)
+..-+|+||+++|+++|+|-+.
T Consensus 113 s~SEIVvPi~~~g~~iGvlDiD 134 (163)
T COG1956 113 SNSEIVVPIFKDGKLIGVLDID 134 (163)
T ss_pred cCceEEEEEEECCEEEEEEecC
Confidence 3457899999999999999777
No 96
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=88.56 E-value=0.24 Score=56.77 Aligned_cols=49 Identities=8% Similarity=0.179 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhcc--CCCCEEEEEEEEecCCeEEEEEEecCCCCCHhH--------HHhcc
Q 008642 493 RQALSNLIEGALMRT--QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMV--------IIANF 545 (558)
Q Consensus 493 ~qVL~NLI~NAlkyt--~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~--------~~~IF 545 (558)
..++.-||+||++-. .....|.|.+ ..++ .|+|+|||.|||.+. .+-+|
T Consensus 32 ~~lv~ElvdNsiDE~~ag~a~~I~V~i--~~d~--~I~V~DnGrGIp~~~h~~~g~~~~e~v~ 90 (625)
T TIGR01055 32 NHLVQEVIDNSVDEALAGFASIIMVIL--HQDQ--SIEVFDNGRGMPVDIHPKEGVSAVEVIL 90 (625)
T ss_pred ceeehhhhhcccchhhcCCCCEEEEEE--eCCC--eEEEEecCCccCcccccccCCcHHHHhh
Confidence 455555556665511 2246788887 3343 499999999999988 66666
No 97
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=87.73 E-value=5 Score=47.22 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=54.4
Q ss_pred ccCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCcCccCceeEEEEEeeCCCCC--cceeeeecccc-----------
Q 008642 111 VLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA--TDIVVLVGNFN----------- 177 (558)
Q Consensus 111 ~~~S~df~~l~~~ql~~l~~~~~~~a~~~vYl~~~~~~~~~~~~L~~v~~yp~~~~--~~~~~~~g~~~----------- 177 (558)
+..+.|+.++.+..++.+...++.+ ..++||.. .+...|...+.+..... ....+-.|+..
T Consensus 12 L~s~~dL~e~L~~Iv~~~~~~l~~d-~~sI~L~D-----~~~~~L~~~as~Gl~~~~~~~~~l~~geGi~G~Va~tg~pV 85 (748)
T PRK11061 12 VASAPRLNEALDILVTETCLAMDTE-VCSVYLAD-----HDRRCYYLMATRGLKKPRGRTVTLAFDEGIVGLVGRLAEPI 85 (748)
T ss_pred HhccCCHHHHHHHHHHHHHHHhCCC-EEEEEEEE-----CCCCEEEEEEeeCCChHhccceeccCCcchHHHHhccCceE
Confidence 4456788999999999999999444 55599975 12233444444432111 11111111110
Q ss_pred -CCcchhHHHHhhhcccccccCCCceEEEeeeeCCeEEEEEEEe
Q 008642 178 -MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAE 220 (558)
Q Consensus 178 -i~~~~~~a~~~~~~~~~~~~~~~~~lvlPL~~~~~vvGvLv~e 220 (558)
++.... ...+........-.-...+++||++++.++|+|.+.
T Consensus 86 ~V~Dv~~-dprf~~~~~~~~~~~~S~L~VPL~~~geVIGVL~v~ 128 (748)
T PRK11061 86 NLADAQK-HPSFKYIPSVKEERFRAFLGVPIIYRRQLLGVLVVQ 128 (748)
T ss_pred EECCccc-CcccccCccccCccceEEEEEEEeeCCEEEEEEEEe
Confidence 111100 000100000011123468899999999999999998
No 98
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=87.04 E-value=0.21 Score=57.02 Aligned_cols=45 Identities=7% Similarity=0.222 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhccCC--CCEEEEEEEEecCCeEEEEEEecCCCCCHhHH
Q 008642 493 RQALSNLIEGALMRTQV--GGKVEIVSAAAPAGDALVVIDDDGPDMHYMVI 541 (558)
Q Consensus 493 ~qVL~NLI~NAlkyt~~--gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~ 541 (558)
.+++.-||+||++..-. ...|.|.+ ..++ .|+|+|||.|||.+..
T Consensus 3 ~~~v~ElvdNAiD~~~~g~at~I~V~i--~~~g--~I~V~DnG~GIp~~~h 49 (594)
T smart00433 3 HHLVDEIVDNAADEALAGYMDTIKVTI--DKDN--SISVEDNGRGIPVEIH 49 (594)
T ss_pred eEEEeeehhcccchhccCCCCEEEEEE--eCCC--eEEEEEeCCceeCCcc
Confidence 44566788888887533 35788887 3344 6999999999997553
No 99
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=85.80 E-value=0.71 Score=52.40 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCCCCC
Q 008642 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 492 L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~ 553 (558)
+.-++.-||+|++++. ...|.|.+.. -|.=.|+|.|||.||++.+.+-+-.+++.-+.
T Consensus 21 l~sAVKELvENSiDAG--AT~I~I~~kd--yG~d~IEV~DNG~GI~~~n~~~l~lkh~TSKi 78 (672)
T KOG1978|consen 21 LVSAVKELVENSIDAG--ATAIDIKVKD--YGSDSIEVSDNGSGISATDFEGLALKHTTSKI 78 (672)
T ss_pred HHHHHHHHHhcCcccC--CceeeEecCC--CCcceEEEecCCCCCCccchhhhhhhhhhhcc
Confidence 3478899999999874 2468888832 23356999999999999887776666654433
No 100
>PTZ00130 heat shock protein 90; Provisional
Probab=84.13 E-value=1.1 Score=52.68 Aligned_cols=33 Identities=30% Similarity=0.372 Sum_probs=21.9
Q ss_pred EEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcc
Q 008642 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANF 545 (558)
Q Consensus 512 ~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IF 545 (558)
.+.|++... ...-.|.|.|||+||..+++..-+
T Consensus 123 ~~~I~I~~D-~~~~tLtI~DnGIGMT~eEl~~nL 155 (814)
T PTZ00130 123 KLEIRISAN-KEKNILSITDTGIGMTKEDLINNL 155 (814)
T ss_pred CceEEEEEC-CCCCEEEEEECCCCCCHHHHHHHh
Confidence 344444323 222468999999999999876543
No 101
>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms]
Probab=82.96 E-value=5.2 Score=35.25 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=19.8
Q ss_pred CceEEEeeeeCCeEEEEEEEec
Q 008642 200 QRAVVFPMVKHPFVVGFLVAEL 221 (558)
Q Consensus 200 ~~~lvlPL~~~~~vvGvLv~e~ 221 (558)
...+++||+.++.++|.+++..
T Consensus 115 ~~~l~vPl~~~~~~~G~l~~~~ 136 (175)
T COG2203 115 RSYLGVPLIAQGELLGLLCVHD 136 (175)
T ss_pred HHheeeeeeECCEeeEEeeeec
Confidence 4688999999999999999993
No 102
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=82.61 E-value=1 Score=51.91 Aligned_cols=49 Identities=8% Similarity=0.256 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHHHhhcc--CCCCEEEEEEEEecCCeEEEEEEecCCCCCHhH
Q 008642 488 EEPALRQALSNLIEGALMRT--QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMV 540 (558)
Q Consensus 488 D~~~L~qVL~NLI~NAlkyt--~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~ 540 (558)
++..|..++.-+|+||++-. .....|.|.+ ..++ .|+|+|||.|||-+.
T Consensus 31 ~~~GL~hlv~EIvdNavDE~~ag~~~~I~V~i--~~dg--sitV~DnGrGIPv~~ 81 (637)
T TIGR01058 31 DSKGLHHLVWEIVDNSVDEVLAGYADNITVTL--HKDN--SITVQDDGRGIPTGI 81 (637)
T ss_pred CcchhheehhhhhcchhhhhhcCCCcEEEEEE--cCCC--eEEEEECCCcccCcc
Confidence 34455555555555555422 3346788887 3344 489999999999753
No 103
>PLN03237 DNA topoisomerase 2; Provisional
Probab=80.92 E-value=2.1 Score=53.06 Aligned_cols=47 Identities=9% Similarity=0.105 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHH
Q 008642 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVI 541 (558)
Q Consensus 491 ~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~ 541 (558)
.+.+||.|-++|++.. +....|.|.+... ++. |+|+|||.|||-+..
T Consensus 81 ifdEIldNAvDe~~r~-g~~~~I~V~I~~~-~gs--IsV~DnGRGIPV~iH 127 (1465)
T PLN03237 81 IFDEILVNAADNKQRD-PKMDSLRVVIDVE-QNL--ISVYNNGDGVPVEIH 127 (1465)
T ss_pred hHHHHhhhhHhHHhhc-CCCCEEEEEEEcC-CCE--EEEEecCccccCCCC
Confidence 3445555555555432 3456788887422 344 899999999998643
No 104
>PLN03128 DNA topoisomerase 2; Provisional
Probab=80.33 E-value=2.6 Score=51.51 Aligned_cols=48 Identities=6% Similarity=0.100 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHH
Q 008642 490 PALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVI 541 (558)
Q Consensus 490 ~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~ 541 (558)
..+.+||.|-++|++.. +....|.|.+... ++. |+|+|||.|||-+..
T Consensus 55 ki~dEIldNAvDe~~~~-g~~~~I~V~i~~~-dgs--IsV~DnGrGIPv~ih 102 (1135)
T PLN03128 55 KIFDEILVNAADNKQRD-PSMDSLKVDIDVE-QNT--ISVYNNGKGIPVEIH 102 (1135)
T ss_pred HHHHHHHHHHHHHhhhc-CCCcEEEEEEEcC-CCe--EEEEecCccccCCCC
Confidence 34455555555555432 3346788777321 344 899999999997643
No 105
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=79.81 E-value=2.6 Score=52.28 Aligned_cols=48 Identities=10% Similarity=0.149 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhhc--cCCCCEEEEEEEEecC-CeEEEEEEecCCCCCHhHH
Q 008642 490 PALRQALSNLIEGALMR--TQVGGKVEIVSAAAPA-GDALVVIDDDGPDMHYMVI 541 (558)
Q Consensus 490 ~~L~qVL~NLI~NAlky--t~~gg~I~I~v~~~~~-~~v~I~V~D~G~GI~~e~~ 541 (558)
..+.+||.|-++|+++- .+....|.|.+. .+ + .|+|+|||.|||-+..
T Consensus 60 ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~--~d~g--~IsV~dnGrGIPv~~h 110 (1388)
T PTZ00108 60 KIFDEILVNAADNKARDKGGHRMTYIKVTID--EENG--EISVYNDGEGIPVQIH 110 (1388)
T ss_pred hhHHHHhhhhhhhhcccCCCCCccEEEEEEe--ccCC--eEEEEecCCcccCCCC
Confidence 44555666666666632 233467888773 33 4 3899999999997653
No 106
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=77.27 E-value=16 Score=40.88 Aligned_cols=20 Identities=15% Similarity=0.328 Sum_probs=18.8
Q ss_pred ceEEEeeeeCCeEEEEEEEe
Q 008642 201 RAVVFPMVKHPFVVGFLVAE 220 (558)
Q Consensus 201 ~~lvlPL~~~~~vvGvLv~e 220 (558)
..+++||..++.++|+|.+.
T Consensus 111 S~l~vPL~~~~~~~GvL~l~ 130 (509)
T PRK05022 111 DCMGLPLFVDGRLIGALTLD 130 (509)
T ss_pred eEEEEEEEECCEEEEEEEEe
Confidence 67999999999999999998
No 107
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=75.76 E-value=1.9 Score=49.37 Aligned_cols=44 Identities=14% Similarity=0.389 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhcc-CCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHH
Q 008642 493 RQALSNLIEGALMRT-QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVI 541 (558)
Q Consensus 493 ~qVL~NLI~NAlkyt-~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~ 541 (558)
.+|+.|-++||+.-. .....|.|.+ . ++. |+|+|||.|||-+..
T Consensus 51 ~EIldNavDe~~~~~~g~~~~I~V~i--~-dgs--isV~dnGrGIPv~~h 95 (602)
T PHA02569 51 DEIIDNSVDEAIRTNFKFANKIDVTI--K-NNQ--VTVSDNGRGIPQAMV 95 (602)
T ss_pred ehhhhhhhhhhhccCCCCCcEEEEEE--c-CCE--EEEEECCCcccCCcc
Confidence 377888888877521 1235677777 3 454 899999999998654
No 108
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=68.60 E-value=3.2 Score=47.15 Aligned_cols=44 Identities=16% Similarity=0.346 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHH
Q 008642 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVII 542 (558)
Q Consensus 493 ~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~ 542 (558)
.+|+.|=|++|+-= -+..|.|.+ ..++. |+|.|||.|||-+...
T Consensus 42 ~EVvDNsiDEalaG--~~~~I~V~l--~~d~s--isV~DnGRGIPvdiH~ 85 (635)
T COG0187 42 WEVVDNSIDEALAG--YADRIDVTL--HEDGS--ISVEDNGRGIPVDIHP 85 (635)
T ss_pred eEeeechHhHHhhC--cCcEEEEEE--cCCCe--EEEEECCCCCccccCC
Confidence 35677777777642 346788877 33555 8999999999987744
No 109
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=66.83 E-value=31 Score=39.29 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=18.3
Q ss_pred ceEEEeeeeCCeEEEEEEEe
Q 008642 201 RAVVFPMVKHPFVVGFLVAE 220 (558)
Q Consensus 201 ~~lvlPL~~~~~vvGvLv~e 220 (558)
.-+=+||+++++++|+||+.
T Consensus 109 sFLGvPIi~~~r~lGVLVVQ 128 (756)
T COG3605 109 SFLGVPIIRRGRLLGVLVVQ 128 (756)
T ss_pred HhhccceeecCceeEEEEEe
Confidence 46779999999999999999
No 110
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=66.57 E-value=1.1 Score=52.99 Aligned_cols=49 Identities=24% Similarity=0.331 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhhcc--CCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHH
Q 008642 489 EPALRQALSNLIEGALMRT--QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVI 541 (558)
Q Consensus 489 ~~~L~qVL~NLI~NAlkyt--~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~ 541 (558)
...|.+++.-+|+||++-. ..+..|.|.+ ..++. |+|+|||.|||-+..
T Consensus 127 ~~GLhhLv~EIlDNSVDE~laG~~~~I~V~i--~~Dgs--ItV~DnGRGIPvd~h 177 (903)
T PTZ00109 127 EKGLHQLLFEILDNSVDEYLAGECNKITVVL--HKDGS--VEISDNGRGIPCDVS 177 (903)
T ss_pred CCcceEEEEEEeeccchhhccCCCcEEEEEE--cCCCe--EEEEeCCcccccccc
Confidence 3344444444455554432 2345788877 33554 899999999998654
No 111
>PF05651 Diacid_rec: Putative sugar diacid recognition; InterPro: IPR008599 This region is found in several proteins characterised as carbohydrate diacid regulators (e.g. P36047 from SWISSPROT). An HTH DNA-binding motif is found at the C terminus of these proteins suggesting that this region includes the sugar recognition region.
Probab=66.41 E-value=44 Score=30.76 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=18.8
Q ss_pred CceEEEeeeeCCeEEEEEEEe
Q 008642 200 QRAVVFPMVKHPFVVGFLVAE 220 (558)
Q Consensus 200 ~~~lvlPL~~~~~vvGvLv~e 220 (558)
...+-+|+.++|.++|++.+.
T Consensus 70 k~GinlPI~~~g~~iGviGIt 90 (135)
T PF05651_consen 70 KPGINLPIIFNGEVIGVIGIT 90 (135)
T ss_pred CcceeeeEEECCEEEEEEEEe
Confidence 356889999999999999888
No 112
>COG3835 CdaR Sugar diacid utilization regulator [Transcription / Signal transduction mechanisms]
Probab=65.64 E-value=22 Score=37.77 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=17.1
Q ss_pred ceEEEeeeeCCeEEEEEEEe
Q 008642 201 RAVVFPMVKHPFVVGFLVAE 220 (558)
Q Consensus 201 ~~lvlPL~~~~~vvGvLv~e 220 (558)
..+=+||+++++||||+.+.
T Consensus 73 pGINLPi~~~~~vVGViGIT 92 (376)
T COG3835 73 PGINLPIRFDGKVVGVIGIT 92 (376)
T ss_pred CCCCcceEecCceEEEEecc
Confidence 35568999999999999877
No 113
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.64 E-value=17 Score=34.05 Aligned_cols=51 Identities=12% Similarity=0.047 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHh
Q 008642 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIA 543 (558)
Q Consensus 491 ~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~ 543 (558)
.+.-+...||+||+||... |+|.|.+... .....+.|++--++=...+-++
T Consensus 63 svgYl~NELiENAVKfra~-geIvieasl~-s~~f~~kvsN~vd~~t~~~f~~ 113 (184)
T COG5381 63 SVGYLANELIENAVKFRAT-GEIVIEASLY-SHKFIFKVSNIVDLPTTIDFEN 113 (184)
T ss_pred hHHHHHHHHHHhhhcccCC-CcEEEEEEec-cceEEEEecccCCCccHHHHHH
Confidence 3445677899999999754 6888888655 5557777777655544444333
No 114
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=65.33 E-value=11 Score=43.46 Aligned_cols=57 Identities=18% Similarity=0.088 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCCC
Q 008642 490 PALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSPP 551 (558)
Q Consensus 490 ~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~ 551 (558)
..|.|++..|+-|++++- ...|.|.+.. ....+.|.|+|.||..+++..+=++|+..
T Consensus 20 ~sla~~VeElv~NSiDA~--At~V~v~V~~---~t~sv~ViDdG~G~~rdDl~~lg~ry~TS 76 (1142)
T KOG1977|consen 20 SSLAQCVEELVLNSIDAE--ATCVAVRVNM---ETFSVQVIDDGFGMGRDDLEKLGNRYFTS 76 (1142)
T ss_pred HHHHHHHHHHHhhccccC--ceEEEEEecC---ceeEEEEEecCCCccHHHHHHHHhhhhhh
Confidence 357899999999999884 3467776632 23678999999999999999998888653
No 115
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=63.85 E-value=81 Score=36.73 Aligned_cols=21 Identities=10% Similarity=0.094 Sum_probs=18.8
Q ss_pred CceEEEeeeeCCeEEEEEEEe
Q 008642 200 QRAVVFPMVKHPFVVGFLVAE 220 (558)
Q Consensus 200 ~~~lvlPL~~~~~vvGvLv~e 220 (558)
..++.+||...+.|+|.|++.
T Consensus 115 ~~~lgvPl~~~~~v~G~l~l~ 135 (686)
T PRK15429 115 GHYCLMPLAAEGHIFGGCEFI 135 (686)
T ss_pred cceEEeceeeCCeeEEEEEEE
Confidence 457779999999999999998
No 116
>PRK13558 bacterio-opsin activator; Provisional
Probab=63.52 E-value=24 Score=40.43 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=37.4
Q ss_pred ceEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCCcccchhhhhhhhhhhhcccCHHHHHH
Q 008642 201 RAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLN 280 (558)
Q Consensus 201 ~~lvlPL~~~~~vvGvLv~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~iq~~~~~~~~~~~f~~~qr~~ 280 (558)
..+++||.++|.++|+|++.. . ++-. |+.+.+..
T Consensus 390 s~~~vPL~~~g~~~GvL~v~~-----------~-----------~~~~------------------------f~~~e~~l 423 (665)
T PRK13558 390 AVAAVPLVYRETTYGVLVVYT-----------A-----------EPDE------------------------IDDRERVV 423 (665)
T ss_pred eEEEEeEEECCEEEEEEEEee-----------C-----------CCCC------------------------CCHHHHHH
Confidence 788999999999999999982 1 1111 56677888
Q ss_pred HHHHHHHHHHHHHH
Q 008642 281 AINICRSLAMAYVM 294 (558)
Q Consensus 281 ~~~ia~~lalA~~l 294 (558)
+..++..++.|..-
T Consensus 424 l~~la~~ia~aI~~ 437 (665)
T PRK13558 424 LEALGRAVGAAINA 437 (665)
T ss_pred HHHHHHHHHHHHHH
Confidence 88999999888743
No 117
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=54.31 E-value=19 Score=39.94 Aligned_cols=31 Identities=29% Similarity=0.303 Sum_probs=21.0
Q ss_pred EEEEEEEEecCCeEEEEEEecCCCCCHhHHHh
Q 008642 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMVIIA 543 (558)
Q Consensus 512 ~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~ 543 (558)
.+.|.+..+ ...-.+.|.|+|+||..+++-+
T Consensus 130 el~ikIK~D-ke~klLhi~DtGiGMT~edLi~ 160 (785)
T KOG0020|consen 130 ELEIKIKAD-KEKKLLHITDTGIGMTREDLIK 160 (785)
T ss_pred ceEEEEeec-hhhCeeeEecccCCccHHHHHH
Confidence 455555434 2234689999999999877654
No 118
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function.
Probab=52.38 E-value=2.2e+02 Score=27.49 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCC
Q 008642 490 PALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMH 537 (558)
Q Consensus 490 ~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~ 537 (558)
+..-+++.|++-=|..+.|.||.|.|.+... .+...++|.=+|+.+.
T Consensus 84 k~~vklllnl~l~a~~alprGG~i~V~~~~~-~~~~~~~v~a~G~~~~ 130 (182)
T PF10090_consen 84 KPEVKLLLNLLLCAEDALPRGGEITVSIEGS-EGDGGWRVRAEGPRAR 130 (182)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCEEEEEEecc-CCCceEEEEEeccccC
Confidence 3444999999999999999999999987544 4446677887887653
No 119
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.03 E-value=62 Score=25.53 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Q 008642 309 NARMSNLVEQIRGPLSSIQTLSKM 332 (558)
Q Consensus 309 ~e~la~lsHELRtPLtaI~~~~~l 332 (558)
.+.+...-||+.|-|..|.|+.++
T Consensus 13 ~~~lR~~RHD~~NhLqvI~gllql 36 (62)
T PF14689_consen 13 IDSLRAQRHDFLNHLQVIYGLLQL 36 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHC
Confidence 344556679999999999998765
No 120
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=46.49 E-value=18 Score=41.02 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=23.1
Q ss_pred CCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHh
Q 008642 510 GGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIA 543 (558)
Q Consensus 510 gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~ 543 (558)
+....|++... ...-.++|.|+|+||..+++..
T Consensus 88 ~~~l~I~i~~n-k~~~tlti~DtGIGMTk~dLvn 120 (656)
T KOG0019|consen 88 LPELEIRIITN-KDKRTITIQDTGIGMTKEDLVN 120 (656)
T ss_pred ccceeEEeccC-CCcceEEEEecCCCcCHHHHHh
Confidence 34566666433 3336799999999999988654
No 121
>PRK04158 transcriptional repressor CodY; Validated
Probab=45.60 E-value=2.2e+02 Score=29.28 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=21.4
Q ss_pred cCCCceEEEeeeeCCeEEEEEEEec
Q 008642 197 VPEQRAVVFPMVKHPFVVGFLVAEL 221 (558)
Q Consensus 197 ~~~~~~lvlPL~~~~~vvGvLv~e~ 221 (558)
.+.....++|+.-.|..+|.|++.+
T Consensus 107 ~~~~~~tIvPI~ggGeRLGTLvl~r 131 (256)
T PRK04158 107 FPDKLTTIVPIIGGGERLGTLILAR 131 (256)
T ss_pred ccCceEEEEEEecCCeEEEEEEEEe
Confidence 3455699999999999999999993
No 122
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=34.17 E-value=2.8e+02 Score=26.85 Aligned_cols=25 Identities=20% Similarity=0.285 Sum_probs=21.3
Q ss_pred cCCCceEEEeeeeCCeEEEEEEEec
Q 008642 197 VPEQRAVVFPMVKHPFVVGFLVAEL 221 (558)
Q Consensus 197 ~~~~~~lvlPL~~~~~vvGvLv~e~ 221 (558)
.+.....++|+.-.|.-+|.|++.+
T Consensus 105 ~~~k~~tivPI~g~GeRLGTLvl~r 129 (177)
T PF06018_consen 105 FPNKYTTIVPIYGGGERLGTLVLAR 129 (177)
T ss_dssp GSSSEEEEEEEEETTEEEEEEEEEE
T ss_pred ccCCcEEEEEEeeCCeEEEEEEEEE
Confidence 3455578999999999999999994
No 123
>PRK11477 carbohydrate diacid transcriptional activator CdaR; Provisional
Probab=31.22 E-value=2.2e+02 Score=30.37 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=18.4
Q ss_pred CceEEEeeeeCCeEEEEEEEe
Q 008642 200 QRAVVFPMVKHPFVVGFLVAE 220 (558)
Q Consensus 200 ~~~lvlPL~~~~~vvGvLv~e 220 (558)
...+-+||+++|.++|++.+.
T Consensus 75 k~GiN~Pi~~~~~viGvIgIt 95 (385)
T PRK11477 75 RQGINLPLRLEGEIVGVIGLT 95 (385)
T ss_pred CcCceeeEEECCEEEEEEecC
Confidence 357889999999999999876
No 124
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=28.24 E-value=44 Score=22.83 Aligned_cols=14 Identities=36% Similarity=0.805 Sum_probs=11.4
Q ss_pred CCeEEEEEEecCCC
Q 008642 522 AGDALVVIDDDGPD 535 (558)
Q Consensus 522 ~~~v~I~V~D~G~G 535 (558)
++...|+|.|+||-
T Consensus 11 Dgn~qITIeD~GPK 24 (30)
T PF07492_consen 11 DGNFQITIEDTGPK 24 (30)
T ss_pred CCCcEEEEecCCCe
Confidence 45588999999984
No 125
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=27.65 E-value=66 Score=32.29 Aligned_cols=57 Identities=11% Similarity=0.185 Sum_probs=41.5
Q ss_pred CCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHh
Q 008642 480 SQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (558)
Q Consensus 480 ~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e 539 (558)
.+...+.+||-+-+-+-.|.++|+..++...+-....-..+ + -.|+|.=+|.|||.-
T Consensus 14 a~~VLmPGDPlRAK~iAetfLe~~~~vnevR~mlgfTGtYK-G--k~iSvmg~GmGipS~ 70 (236)
T COG0813 14 AEVVLMPGDPLRAKYIAETFLENAVCVNEVRGMLGFTGTYK-G--KKISVMGHGMGIPSI 70 (236)
T ss_pred CceeecCCCCchHHHHHHHHHhhhhhhhhhcchhcccceec-C--cEEEEEEecCCCccH
Confidence 34556778999999999999999999986544433332211 2 458999999999853
No 126
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.77 E-value=5.9e+02 Score=24.65 Aligned_cols=42 Identities=26% Similarity=0.190 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCC
Q 008642 494 QALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536 (558)
Q Consensus 494 qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI 536 (558)
..+.||+-=|--+.|.||.+.+.+..- +..-.|+|.-.|+=+
T Consensus 116 kllLNl~lia~~aiPrGG~~~vtle~~-e~d~rfsi~akG~m~ 157 (214)
T COG5385 116 KLLLNLFLIAYGAIPRGGSLVVTLENP-ETDARFSIIAKGRMM 157 (214)
T ss_pred HHHHHHHHHHcccCCCCCeeEEEeecC-CcCceEEEEecCccc
Confidence 567899888888889999998888532 444667777777654
No 127
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=23.11 E-value=98 Score=36.62 Aligned_cols=53 Identities=9% Similarity=0.193 Sum_probs=37.4
Q ss_pred EEEECHHHHHHHHHHHHHHHhhccCCC---CEEEEEEEEecCCeEEEEEEecCCCCCHhH
Q 008642 484 LVAVEEPALRQALSNLIEGALMRTQVG---GKVEIVSAAAPAGDALVVIDDDGPDMHYMV 540 (558)
Q Consensus 484 ~V~~D~~~L~qVL~NLI~NAlkyt~~g---g~I~I~v~~~~~~~v~I~V~D~G~GI~~e~ 540 (558)
...+...-|.+|+.-++.||.. -..+ ..|.+.+. ...-.|.|+|||.|||-+.
T Consensus 46 ~~~t~~pGl~ki~dEilvNaad-k~rd~~m~~i~v~i~---~e~~~isv~nnGkGIPv~~ 101 (842)
T KOG0355|consen 46 VQRTYVPGLYKIFDEILVNAAD-KQRDPKMNTIKVTID---KEKNEISVYNNGKGIPVTI 101 (842)
T ss_pred eEeecCCcHHHHHHHHhhcccc-cccCCCcceeEEEEc---cCCCEEEEEeCCCcceeee
Confidence 3346667889999999999998 3222 35666663 2234599999999998654
No 128
>PF12282 H_kinase_N: Signal transduction histidine kinase; InterPro: IPR022066 This domain is found in bacteria. This domain is about 150 amino acids in length. This domain is found associated with PF07568 from PFAM, PF08448 from PFAM, PF02518 from PFAM. This domain has a single completely conserved residue P that may be functionally important. This family is mostly annotated as a histidine kinase involved in signal transduction but there is little published evidence to support this. ; PDB: 2YKH_B 2YKF_A.
Probab=23.03 E-value=6.1e+02 Score=23.45 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=18.3
Q ss_pred ceEEEeeeeCCeEEEEEEEe
Q 008642 201 RAVVFPMVKHPFVVGFLVAE 220 (558)
Q Consensus 201 ~~lvlPL~~~~~vvGvLv~e 220 (558)
..-++|++++++++|+|..+
T Consensus 105 ~~~~~PI~~~~~vIaVl~~~ 124 (145)
T PF12282_consen 105 RQEVVPIRRNGRVIAVLIRE 124 (145)
T ss_dssp EEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEECCEEEEEEEEE
Confidence 57899999999999999976
Done!