Query 008642
Match_columns 558
No_of_seqs 496 out of 2401
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 08:19:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008642.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008642hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c2a_A Sensor histidine kinase 99.9 4.4E-25 1.5E-29 218.8 27.3 184 301-553 13-202 (258)
2 4ew8_A Sensor protein DIVL; si 99.9 1E-23 3.4E-28 209.3 26.0 190 295-553 27-216 (268)
3 3a0r_A Sensor protein; four he 99.9 1.3E-22 4.3E-27 208.2 22.4 175 307-553 131-305 (349)
4 3d36_A Sporulation kinase B; G 99.9 2.1E-22 7.1E-27 196.2 20.3 173 305-552 11-183 (244)
5 3jz3_A Sensor protein QSEC; he 99.9 1.1E-23 3.7E-28 202.4 9.1 172 308-552 2-173 (222)
6 2e0a_A Pyruvate dehydrogenase 99.9 1E-20 3.4E-25 200.8 18.6 174 310-554 97-299 (394)
7 2btz_A Pyruvate dehydrogenase 99.8 2.5E-20 8.6E-25 197.6 20.6 175 310-554 97-300 (394)
8 1gkz_A [3-methyl-2-oxobutanoat 99.8 1.4E-20 4.6E-25 199.1 16.6 179 305-554 118-308 (388)
9 1y8o_A [pyruvate dehydrogenase 99.8 3E-20 1E-24 198.9 18.3 107 447-554 201-323 (419)
10 2q8g_A [pyruvate dehydrogenase 99.8 3.5E-20 1.2E-24 197.4 18.7 109 445-554 189-312 (407)
11 4fpp_A Phosphotransferase; fou 99.8 1.7E-19 5.8E-24 179.3 20.5 158 311-552 49-208 (247)
12 1b3q_A Protein (chemotaxis pro 99.7 6.1E-16 2.1E-20 163.5 17.7 156 307-553 9-203 (379)
13 3a0y_A Sensor protein; ATP-LID 99.7 1.7E-15 5.7E-20 136.9 15.3 107 446-553 2-108 (152)
14 1ysr_A Sensor-type histidine k 99.6 6.1E-15 2.1E-19 133.7 14.8 102 446-552 4-105 (150)
15 1id0_A PHOQ histidine kinase; 99.6 2.9E-14 1E-18 129.1 14.5 102 448-553 2-103 (152)
16 1bxd_A ENVZ(290-450), protein 99.6 2.9E-14 9.7E-19 130.9 13.3 102 445-553 5-106 (161)
17 1r62_A Nitrogen regulation pro 99.5 1E-14 3.5E-19 132.6 9.6 106 446-553 4-120 (160)
18 3sl2_A Sensor histidine kinase 99.5 4.6E-14 1.6E-18 131.8 11.9 103 449-552 2-105 (177)
19 3ehh_A Sensor kinase (YOCF pro 99.5 7.1E-13 2.4E-17 127.1 17.6 88 448-541 90-178 (218)
20 1i58_A Chemotaxis protein CHEA 99.4 6.2E-13 2.1E-17 125.4 12.2 103 447-552 2-143 (189)
21 3zxo_A Redox sensor histidine 99.0 7.1E-10 2.4E-14 97.5 7.1 86 448-540 3-89 (129)
22 1th8_A Anti-sigma F factor; SP 98.9 1.6E-09 5.6E-14 97.6 8.2 64 487-553 35-101 (145)
23 3ehg_A Sensor kinase (YOCF pro 98.9 2.5E-09 8.7E-14 94.5 8.3 86 450-541 2-88 (128)
24 3zxq_A Hypoxia sensor histidin 98.8 8E-09 2.7E-13 90.1 9.1 83 451-540 2-85 (124)
25 1mu5_A Type II DNA topoisomera 98.8 5.7E-09 1.9E-13 113.2 7.9 70 484-553 25-99 (471)
26 2zbk_B Type 2 DNA topoisomeras 98.7 7.8E-09 2.7E-13 113.5 6.6 71 483-553 22-98 (530)
27 2q2e_B Type 2 DNA topoisomeras 98.5 7.9E-08 2.7E-12 107.2 7.1 69 484-552 30-101 (621)
28 3na3_A DNA mismatch repair pro 98.4 2.6E-07 8.8E-12 96.3 7.5 61 491-555 28-88 (348)
29 1h7s_A PMS1 protein homolog 2; 98.2 1.2E-06 4.3E-11 91.9 6.1 59 491-553 34-92 (365)
30 3h4l_A DNA mismatch repair pro 98.1 1.8E-06 6.2E-11 90.6 5.9 60 491-554 25-84 (367)
31 1b63_A MUTL; DNA mismatch repa 98.1 2.8E-06 9.7E-11 88.1 7.2 58 491-552 24-81 (333)
32 3zcc_A HAMP, osmolarity sensor 98.1 1.8E-05 6.1E-10 66.7 10.9 67 295-367 47-113 (114)
33 1ixm_A SPO0B, protein (sporula 98.1 2.2E-05 7.4E-10 75.2 11.7 77 470-550 88-171 (192)
34 1kij_A DNA gyrase subunit B; t 97.7 1.7E-05 5.6E-10 84.0 3.4 60 486-551 31-98 (390)
35 3zrx_A AF1503 protein, osmolar 97.3 0.0011 3.8E-08 55.3 9.9 65 296-366 48-112 (115)
36 2wer_A ATP-dependent molecular 97.2 0.00018 6.2E-09 70.0 4.4 56 494-550 29-98 (220)
37 2ior_A Chaperone protein HTPG; 97.1 0.0005 1.7E-08 67.7 5.8 56 494-550 50-119 (235)
38 3mmh_A FRMSR, methionine-R-sul 96.9 0.016 5.6E-07 53.7 14.5 129 110-297 25-165 (167)
39 1qy5_A Endoplasmin; GRP94, NEC 96.8 0.00078 2.7E-08 67.7 4.8 53 495-548 32-98 (269)
40 1s16_A Topoisomerase IV subuni 96.8 0.00099 3.4E-08 70.4 5.6 57 489-551 33-97 (390)
41 3trc_A Phosphoenolpyruvate-pro 96.8 0.012 4.2E-07 52.0 11.9 102 113-221 19-134 (171)
42 2gqp_A Endoplasmin; GRP94, HSP 96.7 0.0012 4.2E-08 64.9 4.6 57 493-550 34-104 (236)
43 3ke6_A Protein RV1364C/MT1410; 96.6 0.0022 7.7E-08 67.6 6.7 51 489-539 295-348 (399)
44 2e4s_A CAMP and CAMP-inhibited 96.6 0.035 1.2E-06 50.1 13.8 28 115-144 27-55 (189)
45 1yc1_A HSP 86, heat shock prot 96.6 0.0014 4.9E-08 65.6 4.5 56 494-550 71-140 (264)
46 3e0y_A Conserved domain protei 96.6 0.012 4.1E-07 52.6 10.3 104 111-221 24-139 (181)
47 3o5y_A Sensor protein; GAF dom 96.5 0.028 9.5E-07 51.7 12.8 56 198-299 93-148 (165)
48 3ksh_A Putative uncharacterize 96.5 0.052 1.8E-06 50.1 14.5 96 110-220 25-133 (160)
49 2zmf_A CAMP and CAMP-inhibited 96.5 0.028 9.5E-07 50.6 12.2 31 113-144 25-55 (189)
50 1vhm_A Protein YEBR; structura 96.4 0.053 1.8E-06 51.6 14.1 97 109-220 36-145 (195)
51 3rfb_A Putative uncharacterize 96.4 0.033 1.1E-06 52.0 12.1 95 111-220 27-134 (171)
52 3ci6_A Phosphoenolpyruvate-pro 96.3 0.041 1.4E-06 48.0 11.8 102 112-221 20-136 (171)
53 3k2n_A Sigma-54-dependent tran 96.3 0.12 3.9E-06 46.2 14.9 33 111-144 15-47 (177)
54 3oov_A Methyl-accepting chemot 96.2 0.2 6.7E-06 43.9 16.1 102 112-220 12-133 (169)
55 3t0h_A Heat shock protein HSP 95.9 0.0079 2.7E-07 58.9 5.8 54 494-548 35-102 (228)
56 2w3g_A DOSS, two component sen 95.8 0.27 9.2E-06 42.1 14.6 97 114-221 4-117 (153)
57 4glq_A Methyl-accepting chemot 95.8 0.082 2.8E-06 48.7 11.8 33 111-144 6-38 (171)
58 3fv5_A DNA topoisomerase 4 sub 95.8 0.0062 2.1E-07 58.4 4.1 44 493-540 19-64 (201)
59 1ei1_A DNA gyrase B, GYRB; ATP 95.8 0.0084 2.9E-07 63.3 5.5 56 491-550 34-99 (391)
60 3ttz_A DNA gyrase subunit B; p 95.7 0.015 5E-07 55.7 6.3 48 488-539 28-77 (198)
61 2vjw_A GAF-B, GAF family prote 95.5 0.34 1.2E-05 43.2 14.7 22 200-221 85-106 (149)
62 3hcy_A Putative two-component 95.5 0.36 1.2E-05 41.8 14.4 21 200-220 91-111 (151)
63 3p01_A Two-component response 95.4 0.12 4.2E-06 47.0 11.5 100 112-220 40-151 (184)
64 1mc0_A 3',5'-cyclic nucleotide 95.3 0.65 2.2E-05 46.8 17.6 100 113-220 24-137 (368)
65 3o0i_A HSP90AA1 protein; HSP90 95.2 0.016 5.4E-07 57.6 5.0 51 494-545 63-127 (256)
66 3zq5_A Phytochrome-like protei 95.1 1.5 5.1E-05 47.7 20.5 30 114-144 150-179 (520)
67 3nhq_A Bacteriophytochrome; ph 95.0 0.69 2.4E-05 50.2 17.6 30 114-144 137-166 (505)
68 3peh_A Endoplasmin homolog; st 95.0 0.02 7E-07 57.5 5.1 50 494-544 49-112 (281)
69 1y4s_A Chaperone protein HTPG; 94.9 0.028 9.5E-07 61.9 6.3 53 494-549 30-98 (559)
70 2qyb_A Membrane protein, putat 94.8 0.14 4.9E-06 45.9 10.0 133 112-295 13-159 (181)
71 4emv_A DNA topoisomerase IV, B 94.8 0.022 7.6E-07 55.6 4.6 55 488-546 37-100 (226)
72 3cwv_A DNA gyrase, B subunit, 94.7 0.019 6.6E-07 60.1 4.2 47 488-538 27-75 (369)
73 4duh_A DNA gyrase subunit B; s 94.7 0.017 5.8E-07 56.2 3.4 48 490-541 34-83 (220)
74 1f5m_A GAF; CGMP binding, sign 94.6 0.51 1.7E-05 43.8 13.4 22 199-220 129-151 (180)
75 3nmq_A Heat shock protein HSP 94.4 0.035 1.2E-06 54.6 5.0 49 494-543 42-104 (239)
76 1zxm_A TOPO IIA ATPase, DNA to 94.4 0.046 1.6E-06 57.8 6.1 49 489-540 50-101 (400)
77 2ioq_A Chaperone protein HTPG; 94.3 0.042 1.4E-06 61.2 5.9 51 494-547 30-96 (624)
78 2lb5_A Sensor histidine kinase 94.1 1.2 4.1E-05 41.1 14.8 32 112-144 26-57 (208)
79 2o1u_A Endoplasmin; GRP94, HSP 94.0 0.056 1.9E-06 60.6 6.1 57 485-547 42-114 (666)
80 2cg9_A ATP-dependent molecular 93.8 0.051 1.8E-06 61.0 5.4 51 495-548 30-96 (677)
81 3dba_A CONE CGMP-specific 3',5 93.7 0.57 2E-05 42.8 11.6 32 111-144 16-49 (180)
82 2ool_A Sensor protein; bacteri 93.5 1 3.5E-05 46.4 14.2 30 114-144 159-188 (337)
83 4eho_A Bacteriophytochrome, PA 93.5 1.6 5.6E-05 48.5 17.0 32 112-144 142-173 (635)
84 1ykd_A Adenylate cyclase; GAF 93.2 3.7 0.00013 41.8 18.1 23 199-221 119-142 (398)
85 1mc0_A 3',5'-cyclic nucleotide 93.0 2.1 7.1E-05 43.0 15.6 23 199-221 286-309 (368)
86 1ykd_A Adenylate cyclase; GAF 93.0 0.84 2.9E-05 46.7 12.7 151 114-298 212-380 (398)
87 1pvg_A DNA topoisomerase II; G 92.4 0.15 5.2E-06 54.1 6.2 49 490-541 63-114 (418)
88 3ibj_A CGMP-dependent 3',5'-cy 92.2 2.8 9.7E-05 46.8 16.8 99 114-220 26-137 (691)
89 3ibj_A CGMP-dependent 3',5'-cy 91.8 0.67 2.3E-05 51.9 11.0 22 200-221 287-309 (691)
90 3lnu_A Topoisomerase IV subuni 90.9 0.16 5.3E-06 53.8 4.3 47 489-541 52-98 (408)
91 4e04_A Bacteriophytochrome (li 90.8 4.9 0.00017 41.1 15.2 30 114-144 146-175 (327)
92 3ied_A Heat shock protein; HSP 90.3 0.18 6.3E-06 50.0 3.9 33 513-546 119-151 (272)
93 3s7o_A Bacteriophytochrome; bi 90.2 6.2 0.00021 40.6 15.4 31 113-144 163-193 (343)
94 2k2n_A Sensor protein, SYB-CPH 84.4 0.94 3.2E-05 40.6 4.7 24 198-221 117-140 (172)
95 3eea_A GAF domain/HD domain pr 81.8 28 0.00095 31.2 12.8 24 198-221 105-128 (162)
96 3cit_A Sensor histidine kinase 80.4 5 0.00017 36.8 7.9 87 117-220 29-118 (160)
97 4gfh_A DNA topoisomerase 2; to 80.2 2 6.7E-05 51.3 6.4 48 490-540 58-108 (1177)
98 4eu0_A PELD; C-DI-GMP, signali 63.1 24 0.00084 35.4 8.9 89 117-220 24-124 (298)
99 3bjc_A CGMP-specific 3',5'-cyc 28.5 12 0.00041 43.1 0.0 30 114-144 347-376 (878)
100 3bjc_A CGMP-specific 3',5'-cyc 27.7 13 0.00043 42.9 0.0 33 111-144 162-194 (878)
101 2w1r_A Spovt, stage V sporulat 26.8 49 0.0017 28.4 3.6 22 199-220 75-96 (123)
No 1
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=99.94 E-value=4.4e-25 Score=218.78 Aligned_cols=184 Identities=17% Similarity=0.261 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Q 008642 301 LQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMK--RSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRY 378 (558)
Q Consensus 301 lqq~~~q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~--~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~ 378 (558)
+++....+.+|+++++|||||||++|.+++++|..... ..+...++++.|..++++|..+++++.++..+...
T Consensus 13 l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~----- 87 (258)
T 2c2a_A 13 LKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERK----- 87 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----
Confidence 44445556889999999999999999999999976543 23455788999999999999999998775333211
Q ss_pred hHHHHhhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHH
Q 008642 379 NEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGD 458 (558)
Q Consensus 379 ~~e~l~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ 458 (558)
......+++++.+++++
T Consensus 88 ---------------------------------------------------------------~~~~~~~~~~l~~~~~~ 104 (258)
T 2c2a_A 88 ---------------------------------------------------------------SLQINREKVDLCDLVES 104 (258)
T ss_dssp ---------------------------------------------------------------CCCCCCEEEEHHHHHHH
T ss_pred ---------------------------------------------------------------CccCccceecHHHHHHH
Confidence 00134588999999999
Q ss_pred HHHHHHHHHhhcCCeEEEEec-CCceEEEECHHHHHHHHHHHHHHHhhccCCC---CEEEEEEEEecCCeEEEEEEecCC
Q 008642 459 LFEAVRPLAHMQQRQVELSEL-SQSLLVAVEEPALRQALSNLIEGALMRTQVG---GKVEIVSAAAPAGDALVVIDDDGP 534 (558)
Q Consensus 459 ll~~~~~~a~~~~~~i~l~~~-~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~g---g~I~I~v~~~~~~~v~I~V~D~G~ 534 (558)
++..+...+..++..+.+... +....+.+|+..|.|||.|||+||+||++.+ +.|.|.+... ++.+.|.|.|+|+
T Consensus 105 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~-~~~~~i~V~D~G~ 183 (258)
T 2c2a_A 105 AVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEK-DGGVLIIVEDNGI 183 (258)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEE-TTEEEEEEEECSS
T ss_pred HHHHHHHHHHHcCcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecC-CCeEEEEEEecCC
Confidence 999999998777777776642 4456789999999999999999999999765 5688887654 6679999999999
Q ss_pred CCCHhHHHhcccCCCCCCC
Q 008642 535 DMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 535 GI~~e~~~~IFepF~~~~~ 553 (558)
||+++.+.+||+||++..+
T Consensus 184 Gi~~~~~~~if~~f~~~~~ 202 (258)
T 2c2a_A 184 GIPDHAKDRIFEQFYRVDS 202 (258)
T ss_dssp CCCGGGTTGGGSTTCCCC-
T ss_pred CCCHHHHHhhccccccCCC
Confidence 9999999999999998654
No 2
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=99.92 E-value=1e-23 Score=209.34 Aligned_cols=190 Identities=21% Similarity=0.245 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 008642 295 DQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKAN 374 (558)
Q Consensus 295 ~qr~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~ 374 (558)
.++...+++..+.++++++.++|||||||++|.++++++.+....++...+.++.|....+++..+++.+.++......
T Consensus 27 ~~~~~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~- 105 (268)
T 4ew8_A 27 ADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAG- 105 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-
Confidence 3445556666666789999999999999999999999998766566677788999999999999999988765333110
Q ss_pred hhhhhHHHHhhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHH
Q 008642 375 IVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSD 454 (558)
Q Consensus 375 I~r~~~e~l~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~e 454 (558)
......+++++.+
T Consensus 106 -------------------------------------------------------------------~~~~~~~~~~l~~ 118 (268)
T 4ew8_A 106 -------------------------------------------------------------------EMALEIEDIRVSD 118 (268)
T ss_dssp -------------------------------------------------------------------CCCCCCEEEEHHH
T ss_pred -------------------------------------------------------------------CcceeeeeccHHH
Confidence 0013468899999
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCC
Q 008642 455 VLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGP 534 (558)
Q Consensus 455 lL~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~ 534 (558)
++++++..+...+..++..+.+......+.+.+|+..|.+||.|||+||+||++.++.|.|.+... ++.+.|.|.|+|+
T Consensus 119 ~l~~~~~~~~~~~~~~~i~i~~~~~~~~~~v~~d~~~l~~il~nLl~NA~~~~~~~~~I~i~~~~~-~~~~~i~V~D~G~ 197 (268)
T 4ew8_A 119 LLLNAQERALKDAQLGGVTLAVECEEDVGLIRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRA-LGEVRLDVSDTGR 197 (268)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECCTTSCEEEECHHHHHHHHHHHHHHHHHHSCTTCEEEEEEEEC-SSEEEEEEEESSC
T ss_pred HHHHHHHHHHhhhhccCceEEEEcCCCCceEecCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEec-CCEEEEEEEcCCC
Confidence 999999999998877777777775555558999999999999999999999999989999998754 6679999999999
Q ss_pred CCCHhHHHhcccCCCCCCC
Q 008642 535 DMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 535 GI~~e~~~~IFepF~~~~~ 553 (558)
||+++.+.++|+||++...
T Consensus 198 Gi~~~~~~~if~~~~~~~~ 216 (268)
T 4ew8_A 198 GVPFHVQAHIFDRFVGRDR 216 (268)
T ss_dssp CCCHHHHTTTTSTTCCCSS
T ss_pred CCCHHHHHHHHHHHhcCCC
Confidence 9999999999999997554
No 3
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.90 E-value=1.3e-22 Score=208.18 Aligned_cols=175 Identities=15% Similarity=0.208 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHHhhh
Q 008642 307 QNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKM 386 (558)
Q Consensus 307 q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e~l~~l 386 (558)
..+++++.++|||||||++|.+++++|.+.....+...++++.|..+.+++.++++++.+.....
T Consensus 131 ~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~--------------- 195 (349)
T 3a0r_A 131 ILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKER--------------- 195 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---------------
Confidence 34688999999999999999999999987766666667889999999999999998886641100
Q ss_pred ccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHH
Q 008642 387 NNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPL 466 (558)
Q Consensus 387 ~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~~~~~~ 466 (558)
.....+++++.+++++++..+...
T Consensus 196 --------------------------------------------------------~~~~~~~~~l~~~~~~~~~~~~~~ 219 (349)
T 3a0r_A 196 --------------------------------------------------------QVLEFTEFNLNELIREVYVLFEEK 219 (349)
T ss_dssp ---------------------------------------------------------CEEEEEEEHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------------------cccCCcccCHHHHHHHHHHHHHHH
Confidence 012357899999999999999998
Q ss_pred HhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhccc
Q 008642 467 AHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFA 546 (558)
Q Consensus 467 a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFe 546 (558)
+..++..+.+...+..+.+.+|+..|.|||.|||.||+||++.++.|.|.+... ++.+.|.|.|+|+||+++.+.+||+
T Consensus 220 ~~~~~i~~~~~~~~~~~~~~~d~~~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~-~~~~~i~v~D~G~Gi~~~~~~~if~ 298 (349)
T 3a0r_A 220 IRKMNIDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDM-YTKVRVSVWNSGPPIPEELKEKIFS 298 (349)
T ss_dssp HTTTTCCCEEEESCSCCEEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEEE-TTEEEEEEEEESCCCCGGGGTTTSS
T ss_pred HHHcCcEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHHhccCCCEEEEEEEec-CCEEEEEEEECCCCCChHHHhhcCC
Confidence 876677777776556678999999999999999999999998889999998755 6779999999999999999999999
Q ss_pred CCCCCCC
Q 008642 547 AYSPPHP 553 (558)
Q Consensus 547 pF~~~~~ 553 (558)
||++.++
T Consensus 299 ~f~~~~~ 305 (349)
T 3a0r_A 299 PFFTTKT 305 (349)
T ss_dssp SCCCC--
T ss_pred CCccCCC
Confidence 9998653
No 4
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=99.89 E-value=2.1e-22 Score=196.22 Aligned_cols=173 Identities=18% Similarity=0.224 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHHh
Q 008642 305 SWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLK 384 (558)
Q Consensus 305 ~~q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e~l~ 384 (558)
....+++++.++|||||||++|.+++++|.......+...++++.+..+.+++.++++++.++
T Consensus 11 ~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~----------------- 73 (244)
T 3d36_A 11 MEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTF----------------- 73 (244)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSS-----------------
T ss_pred HHHHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 334578889999999999999999999998765555566778888888888888888777331
Q ss_pred hhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHH
Q 008642 385 KMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVR 464 (558)
Q Consensus 385 ~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~~~~ 464 (558)
++......+++++..++++++..+.
T Consensus 74 -------------------------------------------------------~~~~~~~~~~~~l~~~l~~~~~~~~ 98 (244)
T 3d36_A 74 -------------------------------------------------------AKPAPETPEKLNVKLEIERVIDILR 98 (244)
T ss_dssp -------------------------------------------------------CCSSCCCCEEEEHHHHHHHHHHHHH
T ss_pred -------------------------------------------------------HhcccCCcchhhHHHHHHHHHHHHH
Confidence 0001124588999999999999999
Q ss_pred HHHhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhc
Q 008642 465 PLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIAN 544 (558)
Q Consensus 465 ~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~I 544 (558)
..+... .+.+....+...+.+|+..|.+||.|||+||++|++.++.|.|.+... ++.+.|.|.|+|+||+++...++
T Consensus 99 ~~~~~~--~i~~~~~~~~~~~~~d~~~l~~il~nLl~NA~~~~~~~~~i~i~~~~~-~~~~~i~i~D~G~gi~~~~~~~i 175 (244)
T 3d36_A 99 PLANMS--CVDIQATLAPFSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSID-NGRVLIRIADTGVGMTKEQLERL 175 (244)
T ss_dssp HHHTTT--TEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEEE-TTEEEEEEEECSSCCCHHHHHHT
T ss_pred HHHHhc--CeEEeccCCCceEEeCHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEe-CCEEEEEEEecCCCCCHHHHHHH
Confidence 988554 455554333478899999999999999999999998889999998765 77799999999999999999999
Q ss_pred ccCCCCCC
Q 008642 545 FAAYSPPH 552 (558)
Q Consensus 545 FepF~~~~ 552 (558)
|+||++..
T Consensus 176 f~~~~~~~ 183 (244)
T 3d36_A 176 GEPYFTTK 183 (244)
T ss_dssp TSTTCCSS
T ss_pred hcccccCC
Confidence 99999865
No 5
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=99.89 E-value=1.1e-23 Score=202.39 Aligned_cols=172 Identities=15% Similarity=0.194 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHHhhhc
Q 008642 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMN 387 (558)
Q Consensus 308 ~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e~l~~l~ 387 (558)
+++|++.++|||||||++|.++++++.......+...++++.|..+.+++.++++++.++..+..
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~--------------- 66 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDS--------------- 66 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCC---------------
T ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------------
Confidence 56899999999999999999999998765444444455566677888889999888866422100
Q ss_pred cCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHH
Q 008642 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLA 467 (558)
Q Consensus 388 ~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~~~~~~a 467 (558)
. ......+++++.+++++++..+...+
T Consensus 67 --------------------------------------~---------------~~~~~~~~~~l~~~~~~~~~~~~~~~ 93 (222)
T 3jz3_A 67 --------------------------------------L---------------DNLQDVAEIPLEDLLQSSVMDIYHTA 93 (222)
T ss_dssp --------------------------------------S---------------TTSTTCEEEEHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------c---------------CCccCcccCCHHHHHHHHHHHHHHHH
Confidence 0 01134589999999999999999998
Q ss_pred hhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccC
Q 008642 468 HMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAA 547 (558)
Q Consensus 468 ~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFep 547 (558)
..++..+.+...+..+.+.+|+..|.+||.|||+||+||++.++.|.|.+. ... |.|.|+|+||+++.+.++|+|
T Consensus 94 ~~~~i~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~i~~~---~~~--i~V~D~G~Gi~~~~~~~if~~ 168 (222)
T 3jz3_A 94 QQAKIDVRLTLNAHSIKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLN---ADN--FIVRDNGPGVTPEALARIGER 168 (222)
T ss_dssp HHTTCEEEEEESSCSCEEEECHHHHHHHHHHHHHHHHHTCCTTCEEEEEEC---SSE--EEEECSCC-------------
T ss_pred HHhCCeEEEeeCCcceEEecCHHHHHHHHHHHHHHHHHcCCCCCeEEEEEc---cCe--EEEEECCCCCCHHHHHHHHhh
Confidence 777777777765566789999999999999999999999999999998883 233 899999999999999999999
Q ss_pred CCCCC
Q 008642 548 YSPPH 552 (558)
Q Consensus 548 F~~~~ 552 (558)
|++..
T Consensus 169 f~~~~ 173 (222)
T 3jz3_A 169 FYRPP 173 (222)
T ss_dssp -----
T ss_pred hccCC
Confidence 99854
No 6
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=99.85 E-value=1e-20 Score=200.75 Aligned_cols=174 Identities=16% Similarity=0.154 Sum_probs=131.8
Q ss_pred HHHHHHHHHhhh-----HHHHHHHHHHHHhhhcC---CCcchHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhh
Q 008642 310 ARMSNLVEQIRG-----PLSSIQTLSKMLSLHMK---RSEISYDIVE--DIMVQGDRLRGTLQELQDAVFLTKANIVRYN 379 (558)
Q Consensus 310 e~la~lsHELRt-----PLtaI~~~~~lL~~~~~---~~e~~~~~~e--~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~ 379 (558)
+++.+++||||| ||+.|+++++++..... ..+...++++ .|.+.+.|| +++++.+....
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~--------- 165 (394)
T 2e0a_A 97 SDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSD--------- 165 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCS---------
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhc---------
Confidence 478889999999 99999999996654321 1223355566 577888888 77776442000
Q ss_pred HHHHhhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCc----eeeeHHHH
Q 008642 380 EETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGI----RPCNVSDV 455 (558)
Q Consensus 380 ~e~l~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~----e~vdL~el 455 (558)
. .+...... ++|++.++
T Consensus 166 ---------------------~--------------------------------------~~~~~~~~g~i~~~~~l~~l 186 (394)
T 2e0a_A 166 ---------------------S--------------------------------------QTGNPSHIGSIDPNCDVVAV 186 (394)
T ss_dssp ---------------------S--------------------------------------CCCCTTSBTTBEEEEEHHHH
T ss_pred ---------------------c--------------------------------------cCCCCCccccccCCCCHHHH
Confidence 0 00001223 78999999
Q ss_pred HHHHHHHHHHHHhhc-----CCeEEEEe---cCCceEEEECHHHHHHHHHHHHHHHhhccCCCC-------EEEEEEEEe
Q 008642 456 LGDLFEAVRPLAHMQ-----QRQVELSE---LSQSLLVAVEEPALRQALSNLIEGALMRTQVGG-------KVEIVSAAA 520 (558)
Q Consensus 456 L~~ll~~~~~~a~~~-----~~~i~l~~---~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg-------~I~I~v~~~ 520 (558)
+++++..++..+..+ ++.+.+.. ....+.+.+|+..|.|||.|||+||+||++.++ .|.|.+...
T Consensus 187 l~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~ 266 (394)
T 2e0a_A 187 VQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLG 266 (394)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEeC
Confidence 999999999998665 54444421 355678999999999999999999999998766 699988653
Q ss_pred cCCeEEEEEEecCCCCCHhHHHhcccCCCCCCCC
Q 008642 521 PAGDALVVIDDDGPDMHYMVIIANFAAYSPPHPT 554 (558)
Q Consensus 521 ~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~ 554 (558)
++.+.|.|+|+|+||+++.+.+||+||++..+.
T Consensus 267 -~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~ 299 (394)
T 2e0a_A 267 -KEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPT 299 (394)
T ss_dssp -SSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCC
T ss_pred -CCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCC
Confidence 667999999999999999999999999998765
No 7
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=99.85 E-value=2.5e-20 Score=197.56 Aligned_cols=175 Identities=15% Similarity=0.168 Sum_probs=129.8
Q ss_pred HHHHHHHHHhhh-----HHHHHHHHHHHHhhhcCCC---cchHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhh
Q 008642 310 ARMSNLVEQIRG-----PLSSIQTLSKMLSLHMKRS---EISYDIVE--DIMVQGDRLRGTLQELQDAVFLTKANIVRYN 379 (558)
Q Consensus 310 e~la~lsHELRt-----PLtaI~~~~~lL~~~~~~~---e~~~~~~e--~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~ 379 (558)
+++++++||||| ||+.|+++++++....... +....+++ .|.+.+.|| +++++.++.....
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~------- 167 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGST------- 167 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC----------
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhcccc-------
Confidence 478899999999 9999999999876542221 11223455 366777887 7777654311100
Q ss_pred HHHHhhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCc----eeeeHHHH
Q 008642 380 EETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGI----RPCNVSDV 455 (558)
Q Consensus 380 ~e~l~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~----e~vdL~el 455 (558)
. +...... ++|++.++
T Consensus 168 ----------------------------------------------~--------------~~~~~~~g~i~~~~~l~~l 187 (394)
T 2btz_A 168 ----------------------------------------------N--------------PAHPKHIGSIDPNCNVSEV 187 (394)
T ss_dssp -----------------------------------------------------------------CCBTTBEEEEEHHHH
T ss_pred ----------------------------------------------c--------------CCCCcccceecCCCCHHHH
Confidence 0 0001233 78999999
Q ss_pred HHHHHHHHHHHHhh-----cCCeEEEEe---cCCceEEEECHHHHHHHHHHHHHHHhhccCCCC-------EEEEEEEEe
Q 008642 456 LGDLFEAVRPLAHM-----QQRQVELSE---LSQSLLVAVEEPALRQALSNLIEGALMRTQVGG-------KVEIVSAAA 520 (558)
Q Consensus 456 L~~ll~~~~~~a~~-----~~~~i~l~~---~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg-------~I~I~v~~~ 520 (558)
+++++..++..+.. +++.+.+.. ....+.+.+|+..|.+||.|||+||+||++.++ .|.|.+...
T Consensus 188 i~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~ 267 (394)
T 2btz_A 188 VKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESHESSLILPPIKVMVALG 267 (394)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEEeccCCCCCCeEEEecHHHHHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEeC
Confidence 99999999998864 444444422 355678999999999999999999999998776 699988654
Q ss_pred cCCeEEEEEEecCCCCCHhHHHhcccCCCCCCCC
Q 008642 521 PAGDALVVIDDDGPDMHYMVIIANFAAYSPPHPT 554 (558)
Q Consensus 521 ~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~ 554 (558)
++.+.|.|+|+|+||+++.+.+||+|||+..+.
T Consensus 268 -~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~ 300 (394)
T 2btz_A 268 -EEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPT 300 (394)
T ss_dssp -SSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC-
T ss_pred -CCEEEEEEEeCCCCCCHHHHHHHhcccccCCCC
Confidence 667999999999999999999999999998764
No 8
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=99.84 E-value=1.4e-20 Score=199.11 Aligned_cols=179 Identities=11% Similarity=0.056 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHH-HHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHH
Q 008642 305 SWQNNARMSNLVEQIRGPLSSIQ-TLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETL 383 (558)
Q Consensus 305 ~~q~~e~la~lsHELRtPLtaI~-~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e~l 383 (558)
..+..+++++++||+||||++|. ++.+++ +.....+..+++++.|..+..+|..+++++.++....
T Consensus 118 ~~~~~~~l~~i~helrtpL~~i~~g~~~l~-~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~------------ 184 (388)
T 1gkz_A 118 EAQYCQLVRQLLDDHKDVVTLLAEGLRESR-KHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDK------------ 184 (388)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHSS-SSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC------------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH-hhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------------
Confidence 34457899999999999999999 555444 3333355567889999999999999999885531000
Q ss_pred hhhccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHH
Q 008642 384 KKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAV 463 (558)
Q Consensus 384 ~~l~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~~~ 463 (558)
.. ......++|++.+++++++..+
T Consensus 185 -----------------------------------------~~---------------~~~~~~~~~~l~~li~~~~~~~ 208 (388)
T 1gkz_A 185 -----------------------------------------PD---------------FVGIICTRLSPKKIIEKWVDFA 208 (388)
T ss_dssp -----------------------------------------TT---------------EETTEEEEECHHHHHHHHHHHH
T ss_pred -----------------------------------------CC---------------ccceecCCCCHHHHHHHHHHHH
Confidence 00 0013458999999999999999
Q ss_pred HHHHhhc---CCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCC--------EEEEEEEEecCCeEEEEEEec
Q 008642 464 RPLAHMQ---QRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG--------KVEIVSAAAPAGDALVVIDDD 532 (558)
Q Consensus 464 ~~~a~~~---~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg--------~I~I~v~~~~~~~v~I~V~D~ 532 (558)
+..+..+ ...+.+.. .....+.+|+..|.|||.|||+||+||++.++ .|.|.+... ++.+.|.|+|+
T Consensus 209 ~~~~~~~~g~~~~i~i~~-~~~~~~~~~~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~-~~~v~i~V~D~ 286 (388)
T 1gkz_A 209 RRLCEHKYGNAPRVRING-HVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANN-DVDLIIRISDR 286 (388)
T ss_dssp HHHHHHHHSCCCCEEEEE-STTCCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEEC-SSEEEEEEECC
T ss_pred HHHHHHhcCCCCcEEEEc-cCCCceeecHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEeC-CCEEEEEEEEe
Confidence 9988665 23566653 33456789999999999999999999998775 899988654 66799999999
Q ss_pred CCCCCHhHHHhcccCCCCCCCC
Q 008642 533 GPDMHYMVIIANFAAYSPPHPT 554 (558)
Q Consensus 533 G~GI~~e~~~~IFepF~~~~~~ 554 (558)
|+||+++.+.+||+|||++.+.
T Consensus 287 G~GI~~~~~~~iF~~f~~~~~~ 308 (388)
T 1gkz_A 287 GGGIAHKDLDRVMDYHFTTAEA 308 (388)
T ss_dssp SCCCCTTTTTTTTSTTCCCC--
T ss_pred CCCcCHHHHHHhcCcccccCCC
Confidence 9999999999999999998764
No 9
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=99.84 E-value=3e-20 Score=198.87 Aligned_cols=107 Identities=21% Similarity=0.211 Sum_probs=88.0
Q ss_pred ceeeeHHHHHHHHHHHHHHHHhh-----cCCeEEEEe---cCCceEEEECHHHHHHHHHHHHHHHhhccCCCC-------
Q 008642 447 IRPCNVSDVLGDLFEAVRPLAHM-----QQRQVELSE---LSQSLLVAVEEPALRQALSNLIEGALMRTQVGG------- 511 (558)
Q Consensus 447 ~e~vdL~elL~~ll~~~~~~a~~-----~~~~i~l~~---~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg------- 511 (558)
.++|++.+++++++..++..+.. .++.+.+.. ....+.+.+|+..|.|||.|||+||+||++.++
T Consensus 201 ~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~v~~d~~~L~~vl~NLl~NAik~~~~~~~~~~~~~ 280 (419)
T 1y8o_A 201 DPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYEDRKEGY 280 (419)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred cCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Confidence 48999999999999999988865 454555432 255678999999999999999999999998755
Q ss_pred -EEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCCCCCC
Q 008642 512 -KVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSPPHPT 554 (558)
Q Consensus 512 -~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~ 554 (558)
.|.|.+... ++.+.|.|+|+|+||+++.+++||+|||+..+.
T Consensus 281 ~~I~I~~~~~-~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~ 323 (419)
T 1y8o_A 281 PAVKTLVTLG-KEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPR 323 (419)
T ss_dssp CCEEEEEEEC-SSEEEEEEEECSCCCCHHHHGGGGCTTTC----
T ss_pred CCEEEEEEeC-CCEEEEEEEECCCCCCHHHHHHHhCcccccCCC
Confidence 799888644 667999999999999999999999999998764
No 10
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=99.84 E-value=3.5e-20 Score=197.41 Aligned_cols=109 Identities=20% Similarity=0.219 Sum_probs=92.9
Q ss_pred CCceeeeHHHHHHHHHHHHHHHHhhc-----CCeEEEEe---cCCceEEEECHHHHHHHHHHHHHHHhhccCCCC-----
Q 008642 445 NGIRPCNVSDVLGDLFEAVRPLAHMQ-----QRQVELSE---LSQSLLVAVEEPALRQALSNLIEGALMRTQVGG----- 511 (558)
Q Consensus 445 ~~~e~vdL~elL~~ll~~~~~~a~~~-----~~~i~l~~---~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg----- 511 (558)
...++|++.+++++++..++..+..+ ++.+.+.. ....+.+.+|+..|.|||.|||+||+||++.++
T Consensus 189 ~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~~~~ 268 (407)
T 2q8g_A 189 SINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATMEHHANRGV 268 (407)
T ss_dssp TBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHSTTTCC
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHhhccccCCC
Confidence 34689999999999999999998665 54444432 355678999999999999999999999998776
Q ss_pred --EEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCCCCCC
Q 008642 512 --KVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSPPHPT 554 (558)
Q Consensus 512 --~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~ 554 (558)
.|.|.+... ++.+.|.|+|+|+||+++.+.+||+|||+..+.
T Consensus 269 ~~~I~I~~~~~-~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~ 312 (407)
T 2q8g_A 269 YPPIQVHVTLG-NEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPR 312 (407)
T ss_dssp CCCEEEEEEEC-SSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCC
T ss_pred CCCEEEEEEeC-CCEEEEEEEecCCCCCHHHHHHHhCccccCCCC
Confidence 799988654 667999999999999999999999999998765
No 11
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.83 E-value=1.7e-19 Score=179.31 Aligned_cols=158 Identities=14% Similarity=0.122 Sum_probs=112.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHHhhhccCC
Q 008642 311 RMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSA 390 (558)
Q Consensus 311 ~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e~l~~l~~s~ 390 (558)
+.++|||||||||++|++++++|.+.. .++...+.++.|.++.+++.++++.+. +...
T Consensus 49 las~IaHELrtPL~~I~~~~elL~~~~-~~~~~~~~l~~I~~~~~~~~~ll~~~r----~~~~----------------- 106 (247)
T 4fpp_A 49 LAARLCHDFISPASAIVSGLDLLEDPS-AQDMRDDAMNLIASSARKLADLLQFTR----VAFG----------------- 106 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTT-CGGGHHHHHHHHHHHHHHHHHHHHHHH----HHTT-----------------
T ss_pred HHhccCHHHhHHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHHHHHHHHHHHH----Hhhc-----------------
Confidence 557899999999999999999987653 344556677888888888877765331 1000
Q ss_pred CCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHHhhc
Q 008642 391 YSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQ 470 (558)
Q Consensus 391 ~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~~~~~~a~~~ 470 (558)
.....+++++.++.. .++..+...
T Consensus 107 ----------------------------------------------------~~~~~~~~~~~~l~~----~~~~~~~~~ 130 (247)
T 4fpp_A 107 ----------------------------------------------------ASASAENFDSRELEK----LAQGVFAHV 130 (247)
T ss_dssp ----------------------------------------------------CCSSCCCEEHHHHHH----HHHHHHTTS
T ss_pred ----------------------------------------------------cccccccccHHHHHH----HHHHHHHhh
Confidence 001234567666543 334445334
Q ss_pred CCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCC--CCHhHHHhcccCC
Q 008642 471 QRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPD--MHYMVIIANFAAY 548 (558)
Q Consensus 471 ~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~G--I~~e~~~~IFepF 548 (558)
+..+.+.. +.. . .+..+.|++.||+.||+||++.||.|.|.+... ++.+.|.|.|+|+| |+++..+++|+||
T Consensus 131 ~i~l~~~~-~~~-~---~~~~~~qvl~NLl~NA~~a~~~gg~I~v~~~~~-~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~ 204 (247)
T 4fpp_A 131 RPTLDWQI-EPQ-A---MNKPSSRAVLNIAQIAASALPAGGVATVKGVAA-DGRFSIIADAKGPRARLRPEVLAGLKGEP 204 (247)
T ss_dssp SSEEEECC-CSC-E---ECHHHHHHHHHHHHHHHTTCTTCCEEEEEEEEE-TTEEEEEEEEESTTCCCCHHHHHHHTTCC
T ss_pred hhhccccc-cch-h---hhHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEE-CCEEEEEEEEcCCCCCCCHHHHHHhcCCC
Confidence 44444332 221 1 256789999999999999999999999999765 77799999999988 7799999999999
Q ss_pred CCCC
Q 008642 549 SPPH 552 (558)
Q Consensus 549 ~~~~ 552 (558)
++..
T Consensus 205 ~~~~ 208 (247)
T 4fpp_A 205 LAEG 208 (247)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8764
No 12
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.68 E-value=6.1e-16 Score=163.52 Aligned_cols=156 Identities=17% Similarity=0.204 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHHhhh
Q 008642 307 QNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKM 386 (558)
Q Consensus 307 q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~l~l~k~~I~r~~~e~l~~l 386 (558)
.+.+++.+++|||++|++.|.++.+.+.. +.+....++|..+++++.+...
T Consensus 9 ~k~d~l~~~~~el~~~~~~l~~~~~~~~~------------~~i~~~~~~l~~l~~~l~~~~~----------------- 59 (379)
T 1b3q_A 9 EKLDNLMDLMGELVIARSRILETLKKYNI------------KELDESLSHLSRITLDLQNVVM----------------- 59 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCCC------------HHHHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 35689999999999999999876554422 4577778888888888866421
Q ss_pred ccCCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHH
Q 008642 387 NNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPL 466 (558)
Q Consensus 387 ~~s~~~~~r~~~~~L~~~~~~~~~~~~~~~~~~~l~L~~~~~d~~~~~~pl~la~~~~~~~e~vdL~elL~~ll~~~~~~ 466 (558)
..+.+++.+++..+...++..
T Consensus 60 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 80 (379)
T 1b3q_A 60 -----------------------------------------------------------KIRMVPISFVFNRFPRMVRDL 80 (379)
T ss_dssp -----------------------------------------------------------HHHEEETHHHHTTHHHHHHHH
T ss_pred -----------------------------------------------------------HcceecHHHHHHHHHHHHHHH
Confidence 124677889999999999988
Q ss_pred HhhcCCeEEEEecCCceEEEECHHH---HHHHHHHHHHHHhhcc------------CCCCEEEEEEEEecCCeEEEEEEe
Q 008642 467 AHMQQRQVELSELSQSLLVAVEEPA---LRQALSNLIEGALMRT------------QVGGKVEIVSAAAPAGDALVVIDD 531 (558)
Q Consensus 467 a~~~~~~i~l~~~~~~~~V~~D~~~---L~qVL~NLI~NAlkyt------------~~gg~I~I~v~~~~~~~v~I~V~D 531 (558)
+...++.+++...... +.+|+.. +.++|.|||.||+||+ +.+|.|.|.+... ++.+.|+|+|
T Consensus 81 ~~~~~~~v~l~~~~~~--~~~d~~~~~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~~-~~~v~i~V~D 157 (379)
T 1b3q_A 81 AKKMNKEVNFIMRGED--TELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHE-GNNVVIEVED 157 (379)
T ss_dssp HHHTTCCEEEEEECTT--CEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEE-TTEEEEEEEE
T ss_pred HHHhCCeEEEEEcCCC--eeecHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEEe-CCEEEEEEEE
Confidence 8877888888764333 3568865 4555999999999998 6789999999765 7779999999
Q ss_pred cCCCCCHhHH------------------------HhcccCCCCCCC
Q 008642 532 DGPDMHYMVI------------------------IANFAAYSPPHP 553 (558)
Q Consensus 532 ~G~GI~~e~~------------------------~~IFepF~~~~~ 553 (558)
+|+||+++.+ ++||+||+++.+
T Consensus 158 ~G~Gi~~~~~~~~a~~~gl~~~~~~~~~~~~~~~~~iF~p~fst~~ 203 (379)
T 1b3q_A 158 DGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKE 203 (379)
T ss_dssp CSCCCCHHHHHHHHHHSSSCCSTTTTTSCTHHHHSGGGSTTCC---
T ss_pred CCCCCCHHHHHHHHHHcCCCChhhhhcCCHHHHHHHhcCCCCccCC
Confidence 9999999987 899999988654
No 13
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.65 E-value=1.7e-15 Score=136.89 Aligned_cols=107 Identities=16% Similarity=0.244 Sum_probs=94.6
Q ss_pred CceeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeE
Q 008642 446 GIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDA 525 (558)
Q Consensus 446 ~~e~vdL~elL~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v 525 (558)
+.+++++.+++++++..++..+..++..+.+...+....+.+|+..|.+||.|||+||+||++.++.|.|.+... ++.+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~d~~~l~~il~nll~NAi~~~~~~~~I~i~~~~~-~~~~ 80 (152)
T 3a0y_A 2 EFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDM-YTKV 80 (152)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESCSSCEEEECHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEC-SSEE
T ss_pred ccEEecHHHHHHHHHHHHHHHHHHcCcEEEEecCCCCcEEEECHHHHHHHHHHHHHHHHHhcCCCCEEEEEEEec-CCEE
Confidence 358899999999999999999877777777775556678999999999999999999999998889999998654 6679
Q ss_pred EEEEEecCCCCCHhHHHhcccCCCCCCC
Q 008642 526 LVVIDDDGPDMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 526 ~I~V~D~G~GI~~e~~~~IFepF~~~~~ 553 (558)
.|.|.|+|+||+++.+.++|+||++..+
T Consensus 81 ~i~i~D~G~g~~~~~~~~~f~~~~~~~~ 108 (152)
T 3a0y_A 81 RVSVWNSGPPIPEELKEKIFSPFFTTKT 108 (152)
T ss_dssp EEEEEEESCCCCGGGTTGGGSTTCCCC-
T ss_pred EEEEEeCCCCcCHHHHHhHhhhhccCCC
Confidence 9999999999999999999999998653
No 14
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.62 E-value=6.1e-15 Score=133.69 Aligned_cols=102 Identities=19% Similarity=0.230 Sum_probs=86.8
Q ss_pred CceeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeE
Q 008642 446 GIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDA 525 (558)
Q Consensus 446 ~~e~vdL~elL~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v 525 (558)
+.+++|+.+++++++..++..+ .++.+.+. .+....+.+|+..|.+||.|||+||+||++.+ .|.|.+... ++.+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~--~~~~i~~~-~~~~~~~~~d~~~l~~il~nLl~NA~~~~~~~-~I~i~~~~~-~~~~ 78 (150)
T 1ysr_A 4 DHVPVDITDLLDRAAHDAARIY--PDLDVSLV-PSPTCIIVGLPAGLRLAVDNAIANAVKHGGAT-LVQLSAVSS-RAGV 78 (150)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHS--TTCEEEEC-SCCCCEEEECHHHHHHHHHHHHHHHHHTTCCS-EEEEEEEEE-TTEE
T ss_pred cccccCHHHHHHHHHHHHHHhc--cCCceEEc-cCCCceEecCHHHHHHHHHHHHHHHHhcCCCc-EEEEEEEec-CCEE
Confidence 4589999999999999998876 45666665 34556899999999999999999999999876 899988755 6679
Q ss_pred EEEEEecCCCCCHhHHHhcccCCCCCC
Q 008642 526 LVVIDDDGPDMHYMVIIANFAAYSPPH 552 (558)
Q Consensus 526 ~I~V~D~G~GI~~e~~~~IFepF~~~~ 552 (558)
.|.|.|+|+||+++.+.++|+||++..
T Consensus 79 ~i~v~D~G~gi~~~~~~~if~~f~~~~ 105 (150)
T 1ysr_A 79 EIAIDDNGSGVPEGERQVVFERFSRGS 105 (150)
T ss_dssp EEEEEESSSCCCGGGHHHHHTSCC---
T ss_pred EEEEEECCCCCCHHHHHHHhcccccCC
Confidence 999999999999999999999999753
No 15
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.57 E-value=2.9e-14 Score=129.07 Aligned_cols=102 Identities=18% Similarity=0.209 Sum_probs=87.7
Q ss_pred eeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEE
Q 008642 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALV 527 (558)
Q Consensus 448 e~vdL~elL~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I 527 (558)
+++++.+++++++..+...+..++..+.+.. +....+.+|+..|.+||.|||+||+||++. .|.|.+... ++.+.|
T Consensus 2 e~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~d~~~l~~il~nLl~NAi~~~~~--~i~i~~~~~-~~~~~i 77 (152)
T 1id0_A 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDI-SPEISFVGEQNDFVEVMGNVLDNACKYCLE--FVEISARQT-DEHLYI 77 (152)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEEC-CTTCEEESCHHHHHHHHHHHHHHHHHHCSS--EEEEEEEEC-SSCEEE
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCcEEEEEc-CCCceEeeCHHHHHHHHHHHHHHHHHhCcC--eEEEEEEec-CCEEEE
Confidence 6899999999999999999966665666653 444679999999999999999999999975 788887644 566999
Q ss_pred EEEecCCCCCHhHHHhcccCCCCCCC
Q 008642 528 VIDDDGPDMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 528 ~V~D~G~GI~~e~~~~IFepF~~~~~ 553 (558)
.|.|+|+||+++.+.++|+||++..+
T Consensus 78 ~i~D~G~gi~~~~~~~~f~~~~~~~~ 103 (152)
T 1id0_A 78 VVEDDGPGIPLSKREVIFDRGQRVDT 103 (152)
T ss_dssp EEEESSSCCCGGGTTGGGSCCCCTTC
T ss_pred EEEeCCCCcCHHHHHHHhccceeccC
Confidence 99999999999999999999998764
No 16
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.55 E-value=2.9e-14 Score=130.94 Aligned_cols=102 Identities=19% Similarity=0.302 Sum_probs=88.3
Q ss_pred CCceeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCe
Q 008642 445 NGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGD 524 (558)
Q Consensus 445 ~~~e~vdL~elL~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~ 524 (558)
...+++++.+++++++..+.. .++.+.+........+.+|+..|.+||.|||+||+||+ ++.|.|.+... ++.
T Consensus 5 ~~~~~~~l~~~~~~~~~~~~~----~~~~i~~~~~~~~~~v~~d~~~l~~il~nll~NAik~~--~~~I~i~~~~~-~~~ 77 (161)
T 1bxd_A 5 MPMEMADLNAVLGEVIAAESG----YEREIETALYPGSIEVKMHPLSIKRAVANMVVNAARYG--NGWIKVSSGTE-PNR 77 (161)
T ss_dssp CCSEEECHHHHHHHHHHHHCS----SSCCEEEECCSSCCCEEECHHHHHHHHHHHHHHHHTTC--CSCEEEEEEEE-TTE
T ss_pred ccccccCHHHHHHHHHHHhhh----hcceEEEEecCCCceEEECHHHHHHHHHHHHHHHHhhc--CCeEEEEEEEc-CCE
Confidence 456899999999999998653 45667777555566899999999999999999999999 78899988755 677
Q ss_pred EEEEEEecCCCCCHhHHHhcccCCCCCCC
Q 008642 525 ALVVIDDDGPDMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 525 v~I~V~D~G~GI~~e~~~~IFepF~~~~~ 553 (558)
+.|.|.|+|+||+++.+.++|+||++..+
T Consensus 78 ~~i~i~D~G~gi~~~~~~~~f~~f~~~~~ 106 (161)
T 1bxd_A 78 AWFQVEDDGPGIAPEQRKHLFQPFVRGDS 106 (161)
T ss_dssp EEEEEEEESSCSCTTGGGCSSCCCCCCSC
T ss_pred EEEEEEeCCCCCCHHHHHHhCCCceeCCC
Confidence 99999999999999999999999998665
No 17
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.55 E-value=1e-14 Score=132.59 Aligned_cols=106 Identities=15% Similarity=0.115 Sum_probs=72.8
Q ss_pred CceeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCC-CCEEEEEEEEecCC-
Q 008642 446 GIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQV-GGKVEIVSAAAPAG- 523 (558)
Q Consensus 446 ~~e~vdL~elL~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~-gg~I~I~v~~~~~~- 523 (558)
..+++++.+++++++..+... ..++..+.+...+..+.+.+|+..|.+|+.|||+||+||++. ++.|.|.+... ++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~i~~d~~~l~~il~nLl~NAik~~~~~~~~I~i~~~~~-~~~ 81 (160)
T 1r62_A 4 TRVTESIHKVAERVVTLVSME-LPDNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTA-FQL 81 (160)
T ss_dssp -CEEECHHHHHHHHHHHHTTT-CCTTEEEEEECCTTCCCEEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEE-EEE
T ss_pred ccccCCHHHHHHHHHHHHHhh-cccCcEEEEEcCCCCCeeeeCHHHHHHHHHHHHHHHHHHhhccCCeEEEEEecc-ccc
Confidence 468999999999999998876 444444555444444578999999999999999999999987 88999988755 33
Q ss_pred ---------eEEEEEEecCCCCCHhHHHhcccCCCCCCC
Q 008642 524 ---------DALVVIDDDGPDMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 524 ---------~v~I~V~D~G~GI~~e~~~~IFepF~~~~~ 553 (558)
.+.|.|.|+|+||+++.+.++|+||++..+
T Consensus 82 ~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~ 120 (160)
T 1r62_A 82 TLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE 120 (160)
T ss_dssp EETTEEEEEEEEEEEEEECTTC-----------------
T ss_pred cccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC
Confidence 689999999999999999999999998653
No 18
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.52 E-value=4.6e-14 Score=131.76 Aligned_cols=103 Identities=15% Similarity=0.186 Sum_probs=86.9
Q ss_pred eeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEe-cCCeEEE
Q 008642 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAA-PAGDALV 527 (558)
Q Consensus 449 ~vdL~elL~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~-~~~~v~I 527 (558)
+++|.++++.++..++.. ..++..+.+........+.+|+..|.+||.|||+||++|++.++.|.|.+... .++.+.|
T Consensus 2 ~v~l~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~I~i~~~~~~~~~~i 80 (177)
T 3sl2_A 2 WIQIVRFMSLIIDRFEMT-KEQHVEFIRNLPDRDLYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEELLYI 80 (177)
T ss_dssp EEEHHHHHHHHHHHHHTS-SCC--CEEEECCSSCCEEESCHHHHHHHHHHHHHHHHHTCCTTCCEEEEEEEETTTTEEEE
T ss_pred eeeHHHHHHHHHHHHHHH-HhcCcEEEEecCCCCcEEEeCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEccCCCEEEE
Confidence 589999999999999887 55666666665555678999999999999999999999999888888887533 2455999
Q ss_pred EEEecCCCCCHhHHHhcccCCCCCC
Q 008642 528 VIDDDGPDMHYMVIIANFAAYSPPH 552 (558)
Q Consensus 528 ~V~D~G~GI~~e~~~~IFepF~~~~ 552 (558)
.|.|+|+||+++.+.++|+||++..
T Consensus 81 ~V~D~G~gi~~~~~~~lf~~~~~~~ 105 (177)
T 3sl2_A 81 SVKDEGIGIPKKDVEKVFDRFYRVD 105 (177)
T ss_dssp EEECCSSCCCTTTTTTTTSTTCCCC
T ss_pred EEEECCCCCCHHHHHHHHhhhccCC
Confidence 9999999999999999999999754
No 19
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.49 E-value=7.1e-13 Score=127.09 Aligned_cols=88 Identities=11% Similarity=0.090 Sum_probs=63.0
Q ss_pred eeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCc-eEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEE
Q 008642 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQS-LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL 526 (558)
Q Consensus 448 e~vdL~elL~~ll~~~~~~a~~~~~~i~l~~~~~~-~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~ 526 (558)
.+.++.+.++.+...++ ..+..+.+...... .....+...+.+|+.||+.||+||++. +.|.|.+... ++.+.
T Consensus 90 ~~~~l~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~-~~i~i~~~~~-~~~~~ 163 (218)
T 3ehh_A 90 KGIRLKDELINIKQILE----AADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQA-KTCRVDIQQL-WKEVV 163 (218)
T ss_dssp CCCCHHHHHHHHHHHHH----HTTCEEECCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTCC-SEEEEEEEEE-TTEEE
T ss_pred CCcCHHHHHHHHHHHHH----hcCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEEEEEe-CCEEE
Confidence 34577777777766553 34555665543222 234567788999999999999999964 7899998765 67799
Q ss_pred EEEEecCCCCCHhHH
Q 008642 527 VVIDDDGPDMHYMVI 541 (558)
Q Consensus 527 I~V~D~G~GI~~e~~ 541 (558)
|.|.|+|+||+++..
T Consensus 164 i~V~D~G~Gi~~~~~ 178 (218)
T 3ehh_A 164 ITVSDDGTFKGEENS 178 (218)
T ss_dssp EEEEESSCCCC----
T ss_pred EEEEECCcCCCCCCC
Confidence 999999999999864
No 20
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.43 E-value=6.2e-13 Score=125.37 Aligned_cols=103 Identities=16% Similarity=0.206 Sum_probs=85.3
Q ss_pred ceeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEECH---HHHHHHHHHHHHHHhhcc------------CCCC
Q 008642 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEE---PALRQALSNLIEGALMRT------------QVGG 511 (558)
Q Consensus 447 ~e~vdL~elL~~ll~~~~~~a~~~~~~i~l~~~~~~~~V~~D~---~~L~qVL~NLI~NAlkyt------------~~gg 511 (558)
.+++++.++++.++..++..+...+..+.+....+. +..|+ ..+.+||.|||+||+||+ +.++
T Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~ 79 (189)
T 1i58_A 2 SHMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGED--TELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIG 79 (189)
T ss_dssp CSEEETHHHHTTHHHHHHHHHHHTTCCEEEEEECTT--CEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSE
T ss_pred CeEecHHHHHHHHHHHHHHHHHHhCCcEEEEEcCCc--ccccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCC
Confidence 478999999999999999999877888887764333 33454 456666999999999997 6788
Q ss_pred EEEEEEEEecCCeEEEEEEecCCCCCHhHH------------------------HhcccCCCCCC
Q 008642 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMVI------------------------IANFAAYSPPH 552 (558)
Q Consensus 512 ~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~------------------------~~IFepF~~~~ 552 (558)
.|.|.+... ++.+.|.|.|+|+||+++.+ .++|+||++..
T Consensus 80 ~I~I~~~~~-~~~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~ 143 (189)
T 1i58_A 80 TLILSARHE-GNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTK 143 (189)
T ss_dssp EEEEEEEEE-TTEEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTCCHHHHHGGGGSTTCSHH
T ss_pred eEEEEEEec-CCEEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcccchhhhHHHhcCCccccc
Confidence 999998765 67799999999999999986 99999998753
No 21
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=98.97 E-value=7.1e-10 Score=97.46 Aligned_cols=86 Identities=5% Similarity=0.033 Sum_probs=66.7
Q ss_pred eeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCce-EEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEE
Q 008642 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL 526 (558)
Q Consensus 448 e~vdL~elL~~ll~~~~~~a~~~~~~i~l~~~~~~~-~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~ 526 (558)
+.+++.+++++++..+ ...+..+.+....... ....++..|.+|+.|||+||+||++ ++.|.|.+... ++ +.
T Consensus 3 ~~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~NA~k~~~-~~~i~i~~~~~-~~-~~ 75 (129)
T 3zxo_A 3 MVTRLRQRIDAAVAQF----ADSGLRTSVQFVGPLSVVDSALADQAEAVVREAVSNAVRHAA-ASTLTVRVKVD-DD-LC 75 (129)
T ss_dssp --CCHHHHHHHHHHHH----SCTTSEEEEEEESCGGGSCHHHHHHHHHHHHHHHHHCCCCSS-CCEEEEEEEES-SE-EE
T ss_pred ccccHHHHHHHHHHHH----hhcCceEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCC-CceEEEEEEEc-CC-EE
Confidence 5789999999999887 3356677776533333 3344588999999999999999995 57899998765 55 99
Q ss_pred EEEEecCCCCCHhH
Q 008642 527 VVIDDDGPDMHYMV 540 (558)
Q Consensus 527 I~V~D~G~GI~~e~ 540 (558)
|.|.|+|+||+++.
T Consensus 76 i~v~D~G~gi~~~~ 89 (129)
T 3zxo_A 76 IEVTDNGRGMPDEF 89 (129)
T ss_dssp EEEEECCCCCTTTT
T ss_pred EEEecCCCCCCccc
Confidence 99999999999764
No 22
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=98.93 E-value=1.6e-09 Score=97.61 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=53.5
Q ss_pred ECHHHHHHHHHHHHHHHhhccCC---CCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCCCCC
Q 008642 487 VEEPALRQALSNLIEGALMRTQV---GGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 487 ~D~~~L~qVL~NLI~NAlkyt~~---gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~ 553 (558)
.|...+.+++.||++||++|+.. ++.|.|.+... ++.+.|.|.|+|+||+ .+.++|+||++..+
T Consensus 35 ~~~~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~-~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~ 101 (145)
T 1th8_A 35 DELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIE-DGVVHLTVRDEGVGIP--DIEEARQPLFTTKP 101 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEE-TTEEEEEEEECSSCCS--CHHHHTCCC-----
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEe-CCEEEEEEEECCCCcC--hHHHhhcccccCCC
Confidence 47789999999999999999976 68999998765 6779999999999999 88999999998654
No 23
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=98.91 E-value=2.5e-09 Score=94.50 Aligned_cols=86 Identities=12% Similarity=0.088 Sum_probs=63.2
Q ss_pred eeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCc-eEEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEE
Q 008642 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQS-LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVV 528 (558)
Q Consensus 450 vdL~elL~~ll~~~~~~a~~~~~~i~l~~~~~~-~~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~ 528 (558)
+++.+.++.+...++ ..+..+.+....+. .....+...+.+++.||++||+||++. +.|.|.+... ++.+.|.
T Consensus 2 v~l~~~l~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~-~~i~i~~~~~-~~~~~i~ 75 (128)
T 3ehg_A 2 IRLKDELINIKQILE----AADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQA-KTCRVDIQQL-WKEVVIT 75 (128)
T ss_dssp CCHHHHHHHHHHHHH----HTTCEEECCCCSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCC-SEEEEEEEEE-TTEEEEE
T ss_pred ccHHHHHHHHHHHHH----HcCCEEEEEcCccccccCHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEEEEEe-CCEEEEE
Confidence 456666666655443 35555655543222 234557889999999999999999964 7899988755 6779999
Q ss_pred EEecCCCCCHhHH
Q 008642 529 IDDDGPDMHYMVI 541 (558)
Q Consensus 529 V~D~G~GI~~e~~ 541 (558)
|.|+|+||+++..
T Consensus 76 V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 76 VSDDGTFKGEENS 88 (128)
T ss_dssp EEESSCCCSCSSC
T ss_pred EEECCcCcCcccC
Confidence 9999999998753
No 24
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=98.84 E-value=8e-09 Score=90.13 Aligned_cols=83 Identities=11% Similarity=0.124 Sum_probs=63.7
Q ss_pred eHHHHHHHHHHHHHHHHhhcCCeEEEEecCCce-EEEECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEE
Q 008642 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVI 529 (558)
Q Consensus 451 dL~elL~~ll~~~~~~a~~~~~~i~l~~~~~~~-~V~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V 529 (558)
++.+.+.+++..+ ...+..+.+....+.. ....+...|.+++.||++||+||++. +.|.|.+... ++ +.|.|
T Consensus 2 ~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~-~~i~i~~~~~-~~-~~i~v 74 (124)
T 3zxq_A 2 GLRHRLDKVIDQL----AIPALHTTVQYTGPLSVVDTVLANHAEAVLREAVSNAVRHANA-TSLAINVSVE-DD-VRVEV 74 (124)
T ss_dssp CHHHHHHHHHHHH----TTTTSEEEEEEESCGGGCCHHHHHHHHHHHHHHHHHHHTCTTC-CEEEEEEEEE-EE-EEEEE
T ss_pred cHHHHHHHHHHHH----HhcCceEEEEeeCccccccHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEEEEeC-CC-EEEEE
Confidence 5677888887777 2355667776533333 33345789999999999999999975 6899988765 45 99999
Q ss_pred EecCCCCCHhH
Q 008642 530 DDDGPDMHYMV 540 (558)
Q Consensus 530 ~D~G~GI~~e~ 540 (558)
+|+|+||+++.
T Consensus 75 ~D~G~gi~~~~ 85 (124)
T 3zxq_A 75 VDDGVGISGDI 85 (124)
T ss_dssp EECCCSSCGGG
T ss_pred EECCCCCCccc
Confidence 99999999875
No 25
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.80 E-value=5.7e-09 Score=113.18 Aligned_cols=70 Identities=21% Similarity=0.149 Sum_probs=59.8
Q ss_pred EEEECHHHHHHHHHHHHHHHhhccCCCC---EEEEEEEEec--CCeEEEEEEecCCCCCHhHHHhcccCCCCCCC
Q 008642 484 LVAVEEPALRQALSNLIEGALMRTQVGG---KVEIVSAAAP--AGDALVVIDDDGPDMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 484 ~V~~D~~~L~qVL~NLI~NAlkyt~~gg---~I~I~v~~~~--~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~ 553 (558)
.+..|+..|.|||.|||+||++|+..++ .|.|.+.... ++.+.|+|.|||+||+++++.++|+||+++..
T Consensus 25 ~~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk 99 (471)
T 1mu5_A 25 GFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSK 99 (471)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-C
T ss_pred EEeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhcccccccc
Confidence 4556789999999999999999998887 8999886542 25689999999999999999999999976544
No 26
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.73 E-value=7.8e-09 Score=113.52 Aligned_cols=71 Identities=23% Similarity=0.161 Sum_probs=59.8
Q ss_pred eEEEEC-HHHHHHHHHHHHHHHhhccCCCC---EEEEEEEEec--CCeEEEEEEecCCCCCHhHHHhcccCCCCCCC
Q 008642 483 LLVAVE-EPALRQALSNLIEGALMRTQVGG---KVEIVSAAAP--AGDALVVIDDDGPDMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 483 ~~V~~D-~~~L~qVL~NLI~NAlkyt~~gg---~I~I~v~~~~--~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~ 553 (558)
+.+..+ +..|.|||.|||+||++|+..|+ .|.|.+.... ++.+.|+|.|||+||+++.+.++|+||+++..
T Consensus 22 l~i~~~d~~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk 98 (530)
T 2zbk_B 22 LAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSK 98 (530)
T ss_dssp GGTCSSHHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCC
T ss_pred ceEEcCcHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCC
Confidence 334445 49999999999999999999888 8888886542 25689999999999999999999999976554
No 27
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.53 E-value=7.9e-08 Score=107.15 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=58.7
Q ss_pred EEEECHHHHHHHHHHHHHHHhhccCCCC---EEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCCCC
Q 008642 484 LVAVEEPALRQALSNLIEGALMRTQVGG---KVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSPPH 552 (558)
Q Consensus 484 ~V~~D~~~L~qVL~NLI~NAlkyt~~gg---~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~ 552 (558)
.+.+|+..|.+|+.|||+||++|+..++ .|.|.+.....+.+.|+|.|||+||+++.+.++|++|+++.
T Consensus 30 ~~~~D~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~~ats 101 (621)
T 2q2e_B 30 GFDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGS 101 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCCCC-
T ss_pred EEecCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhhccCC
Confidence 4667999999999999999999998767 89888865422568999999999999999999998886543
No 28
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=98.43 E-value=2.6e-07 Score=96.31 Aligned_cols=61 Identities=15% Similarity=0.259 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCCCCCCC
Q 008642 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSPPHPTP 555 (558)
Q Consensus 491 ~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~~ 555 (558)
.+.+|+.|||+||+++. .+.|.|.+. .++...|+|.|||+||+++++.++|+||++.+...
T Consensus 28 ~~~~vv~eLv~NAidA~--a~~I~I~i~--~~~~~~I~V~DnG~GI~~~~l~~~~~~~~tsK~~~ 88 (348)
T 3na3_A 28 RPANAIKEMIENCLDAK--STSIQVIVK--EGGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQS 88 (348)
T ss_dssp SHHHHHHHHHHHHHHTT--CSEEEEEEE--GGGTSEEEEEECSCCCCGGGGGTTTSTTCCSSCCC
T ss_pred CHHHHHHHHHHHHHHcC--CCEEEEEEE--eCCEEEEEEEECCcCcChHHhhhhhccccccccCc
Confidence 45799999999999994 468888883 34446799999999999999999999999987654
No 29
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.19 E-value=1.2e-06 Score=91.87 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCCCCC
Q 008642 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSPPHP 553 (558)
Q Consensus 491 ~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~ 553 (558)
.+.+++.|||+||++|. .+.|.|.+. .++...|+|.|||+||+++++.++|++|++.+.
T Consensus 34 ~~~~vl~eLv~NAiDA~--a~~I~I~i~--~~~~~~I~V~DnG~Gi~~~~l~~~f~~~~tsK~ 92 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAG--ATNIDLKLK--DYGVDLIEVSDNGCGVEEENFEGLTLKHHTSKI 92 (365)
T ss_dssp CHHHHHHHHHHHHHHTT--CSEEEEEEE--GGGTSEEEEEECSCCCCGGGSGGGGC-------
T ss_pred hHHHHHHHHHHHHHHCC--CCEEEEEEE--eCCcEEEEEEECCCCcCHHHHHHHhhhcccccc
Confidence 46899999999999986 357888873 234478999999999999999999999988653
No 30
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=98.13 E-value=1.8e-06 Score=90.58 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCCCCCC
Q 008642 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSPPHPT 554 (558)
Q Consensus 491 ~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~ 554 (558)
.+.+|+.|||+||+++. ...|.|.+ ..++...|+|.|||+||+++++.++|+||++.+..
T Consensus 25 ~~~~vv~eLv~NaiDA~--a~~I~I~i--~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~ 84 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDAN--ANQIEIIF--KDYGLESIECSDNGDGIDPSNYEFLALKHYTSKIA 84 (367)
T ss_dssp SHHHHHHHHHHHHHHTT--CSEEEEEE--ETTTTSEEEEEECSCCCCGGGTTTTTCCEEC----
T ss_pred CHHHHHHHHHHHHHHCC--CCEEEEEE--EeCCEEEEEEEECCCCcChhHhccceeccccCcCC
Confidence 45799999999999985 45788887 33455789999999999999999999999887643
No 31
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=98.13 E-value=2.8e-06 Score=88.05 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCCCC
Q 008642 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSPPH 552 (558)
Q Consensus 491 ~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~ 552 (558)
.+.+++.|||+||++|. ...|.|.+. .++...|+|.|||+||+++++..+|++|++.+
T Consensus 24 ~~~~~v~ELi~NaidA~--a~~I~I~i~--~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK 81 (333)
T 1b63_A 24 RPASVVKELVENSLDAG--ATRIDIDIE--RGGAKLIRIRDNGCGIKKDELALALARHATSK 81 (333)
T ss_dssp SHHHHHHHHHHHHHHTT--CSEEEEEEE--GGGTSEEEEEECSCCCCGGGHHHHHSTTCCSS
T ss_pred CHHHHHHHHHHHHHHCC--CCeEEEEEE--eCCceEEEEEEcCCCcCHHHHHHhhhcccccC
Confidence 56899999999999997 357888874 33446899999999999999999999998764
No 32
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=98.12 E-value=1.8e-05 Score=66.65 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 008642 295 DQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDA 367 (558)
Q Consensus 295 ~qr~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d~ 367 (558)
.+....+++...+..+++++++||+||||++|.++++.+... ...+.+.|..+.++|..+++++.++
T Consensus 47 n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~~------~~~~~~~i~~~~~~l~~~i~~ll~~ 113 (114)
T 3zcc_A 47 ERLRRSLKQLADDGTLLMAGVSHDLRTPLTRIRLATEMMSEQ------DGYLAESINKDIEECNAIIEQFIDY 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG------GHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHcChHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555666678899999999999999999999988532 3456688999999999999988653
No 33
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=98.08 E-value=2.2e-05 Score=75.19 Aligned_cols=77 Identities=8% Similarity=-0.008 Sum_probs=43.3
Q ss_pred cCCeEEEEecCCceEEEECHHHHHHHHHHHHHHHhhcc------CCCCEEEEEEEEec-CCeEEEEEEecCCCCCHhHHH
Q 008642 470 QQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT------QVGGKVEIVSAAAP-AGDALVVIDDDGPDMHYMVII 542 (558)
Q Consensus 470 ~~~~i~l~~~~~~~~V~~D~~~L~qVL~NLI~NAlkyt------~~gg~I~I~v~~~~-~~~v~I~V~D~G~GI~~e~~~ 542 (558)
++..+++........+...+.. +.||++||+.+. ...+.|.|.+.... ++.+.|.|.|+|+||+++.+.
T Consensus 88 ~e~~i~lev~~~~s~l~~~~~~----lgnLi~na~~Ai~~~~~~~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~ 163 (192)
T 1ixm_A 88 HYMTLEYEVLGEIKDLSAYDQK----LAKLMRKLFHLFDQAVSRESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFD 163 (192)
T ss_dssp CSSEEEEEEESSCCCCTTTHHH----HHHHHHHHHHHHHHHBCTTSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC
T ss_pred ccCCeEEEEecCccccCCCcHH----HHHHHHHHHHHHHhhhccCCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHH
Confidence 5667777322222122223333 366666666554 23578888885421 345999999999999999999
Q ss_pred hcccCCCC
Q 008642 543 ANFAAYSP 550 (558)
Q Consensus 543 ~IFepF~~ 550 (558)
+||++.+.
T Consensus 164 ~if~~~~~ 171 (192)
T 1ixm_A 164 DIRQNGYE 171 (192)
T ss_dssp --------
T ss_pred HHHhCCCC
Confidence 99986554
No 34
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=97.67 E-value=1.7e-05 Score=84.05 Aligned_cols=60 Identities=12% Similarity=0.209 Sum_probs=50.0
Q ss_pred EECHHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHh--------cccCCCCC
Q 008642 486 AVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIA--------NFAAYSPP 551 (558)
Q Consensus 486 ~~D~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~--------IFepF~~~ 551 (558)
.++...+.+++.|+|+||+++ .++.|.|.+ ..++ .|+|.|||+|||.+...+ +|+.|+++
T Consensus 31 ~g~~~~v~Elv~N~iD~a~~~--~~~~I~V~i--~~~~--~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~ 98 (390)
T 1kij_A 31 EGYHHLFKEILDNAVDEALAG--YATEILVRL--NEDG--SLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSG 98 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--SCCEEEEEE--CTTS--CEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEE
T ss_pred chHHHHHHHHHHHHHHHhhhC--CCCEEEEEE--EcCC--EEEEEEcCCCCCHHHhhhccccchhhheeeeeec
Confidence 467889999999999999985 467888888 3233 699999999999999877 99988764
No 35
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=97.34 E-value=0.0011 Score=55.27 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 008642 296 QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQD 366 (558)
Q Consensus 296 qr~~~lqq~~~q~~e~la~lsHELRtPLtaI~~~~~lL~~~~~~~e~~~~~~e~I~~~~~rL~~Ll~~L~d 366 (558)
.....+++...+..+++..++||+|||++.|.++++.+... ..+..+.+...+.+|.++++.+.+
T Consensus 48 ~m~~~l~~~~~~~~~~~~~~shel~~~l~~i~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~l~~ 112 (115)
T 3zrx_A 48 RLRRSLKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ------DGYLAESINKDIEECNAIIEQFID 112 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG------GHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555567899999999999999999999877543 256677888888888888887754
No 36
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=97.24 E-value=0.00018 Score=70.02 Aligned_cols=56 Identities=16% Similarity=0.164 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhccC--------------CCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCC
Q 008642 494 QALSNLIEGALMRTQ--------------VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSP 550 (558)
Q Consensus 494 qVL~NLI~NAlkyt~--------------~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~ 550 (558)
.+|.+||+||+++.. .++.|.|.+... .+...|.|.|||+||+++++...|..+++
T Consensus 29 ~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~-~~~~~i~I~DnG~GMs~edl~~~l~~ia~ 98 (220)
T 2wer_A 29 IFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPK-PEQKVLEIRDSGIGMTKAELINNLGTIAK 98 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEE-GGGTEEEEEECSCCCCHHHHHHHTTTSCC
T ss_pred HHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEEC-CCCCEEEEEEcCCCCCHHHHHHHHHhHhc
Confidence 589999999999864 134555555434 33457999999999999999888876654
No 37
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=97.09 E-value=0.0005 Score=67.69 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhccC--------------CCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCC
Q 008642 494 QALSNLIEGALMRTQ--------------VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSP 550 (558)
Q Consensus 494 qVL~NLI~NAlkyt~--------------~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~ 550 (558)
.+|.+||+||+++.. ....+.|.+... .+...|.|.|||+||+++++...|..+++
T Consensus 50 ~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~-~~~~~i~I~DnG~GMs~edl~~~~~~ia~ 119 (235)
T 2ior_A 50 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFD-KDKRTLTISDNGVGMTRDEVIDHLGTIAK 119 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEE-TTTTEEEEEECSSCCCHHHHHHHHTTCCC
T ss_pred HHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEc-CCceEEEEEECCCCCCHHHHHHHHHHHcc
Confidence 589999999999862 123333444324 33345999999999999999888876654
No 38
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=96.95 E-value=0.016 Score=53.73 Aligned_cols=129 Identities=12% Similarity=0.114 Sum_probs=78.2
Q ss_pred cccCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCcCccCceeEEEEEeeCCCCCcceeeeecccc------------
Q 008642 110 LVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFN------------ 177 (558)
Q Consensus 110 ~~~~S~df~~l~~~ql~~l~~~~~~~a~~~vYl~~~~~~~~~~~~L~~v~~yp~~~~~~~~~~~g~~~------------ 177 (558)
++..+.|+......-+.++...++.+ +.+||+.. ..++++.+.+....|.. ..+..|+..
T Consensus 25 ll~~~~dl~~~L~~v~~~l~~~l~~~-~~~iyL~d---~~~~~L~l~a~~G~~~~----~~i~~geGi~G~v~~~g~~~~ 96 (167)
T 3mmh_A 25 VVADETDWVANLANTAAVLKEAFGWF-WVGFYLVD---TRSDELVLAPFQGPLAC----TRIPFGRGVCGQAWAKGGTVV 96 (167)
T ss_dssp HHHTCCCHHHHHHHHHHHHHHHHCCS-EEEEEEEE---TTTTEEEEEEEESSCCC----SEEETTSHHHHHHHHHTSCEE
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCc-EEEEEEEE---CCCCEEEEEEecccccc----eEeccCCChHHHHHhCCcEEE
Confidence 34456788888888889999888645 66699985 12455666665554421 223222221
Q ss_pred CCcchhHHHHhhhcccccccCCCceEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCCccc
Q 008642 178 MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTES 257 (558)
Q Consensus 178 i~~~~~~a~~~~~~~~~~~~~~~~~lvlPL~~~~~vvGvLv~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 257 (558)
++.....+ ..+.+ .......+++||+.+++++|+|.+.. . ....
T Consensus 97 v~Dv~~~p-~~~~~----~~~~~S~i~vPi~~~g~viGVL~i~s-----------~-----------~~~~--------- 140 (167)
T 3mmh_A 97 VGDVDAHP-DHIAC----SSLSRSEIVVPLFSDGRCIGVLDADS-----------E-----------HLAQ--------- 140 (167)
T ss_dssp ESCGGGST-TCCCS----STTCCEEEEEEEEETTEEEEEEEEEE-----------S-----------STTC---------
T ss_pred ECCcccCc-chhhc----CccCCeEEEEEeccCCEEEEEEEEec-----------C-----------CCCC---------
Confidence 11110000 00000 12345689999999999999999983 1 1111
Q ss_pred chhhhhhhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHHH
Q 008642 258 HAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQK 297 (558)
Q Consensus 258 ~~iq~~~~~~~~~~~f~~~qr~~~~~ia~~lalA~~l~qr 297 (558)
|++++...++.+|..++.+..++.+
T Consensus 141 ---------------F~~~d~~~L~~lA~~la~~i~~~~~ 165 (167)
T 3mmh_A 141 ---------------FDETDALYLGELAKILEKRFEASRQ 165 (167)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6667778888898888877665543
No 39
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=96.85 E-value=0.00078 Score=67.68 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhccC--------------CCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCC
Q 008642 495 ALSNLIEGALMRTQ--------------VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAY 548 (558)
Q Consensus 495 VL~NLI~NAlkyt~--------------~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF 548 (558)
+|..||+||+++.. .++.+.|.+... .+...|.|.|||+||+.+++...|..+
T Consensus 32 fLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d-~~~~~l~I~DnGiGMt~edl~~~l~ti 98 (269)
T 1qy5_A 32 FLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCD-KEKNLLHVTDTGVGMTREELVKNLGTI 98 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEE-TTTTEEEEEECSCCCCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEc-CCceEEEEEECCCCCCHHHHHHHhhhh
Confidence 88999999999863 234445555434 344578999999999999987766544
No 40
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=96.82 E-value=0.00099 Score=70.40 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhH--------HHhcccCCCCC
Q 008642 489 EPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMV--------IIANFAAYSPP 551 (558)
Q Consensus 489 ~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~--------~~~IFepF~~~ 551 (558)
...+.+++.|.|+||+ ......|.|.+ ..++ .|+|.|||.|||.+. .+.+|..|+.+
T Consensus 33 ~~lv~ElvdNsiD~a~--~g~a~~I~V~i--~~~g--~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhag 97 (390)
T 1s16_A 33 NHLGQEVIDNSVDEAL--AGHAKRVDVIL--HADQ--SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAG 97 (390)
T ss_dssp HHHHHHHHHHHHHHHH--TTCCSEEEEEE--CTTS--CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEE
T ss_pred HHHHHHHHHHHHHHHh--cCCCCEEEEEE--ecCC--EEEEEECCCCcCcccccccCcchhhheeeeeccc
Confidence 5688899999999998 34457888888 4344 599999999999988 67889887654
No 41
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=96.79 E-value=0.012 Score=52.05 Aligned_cols=102 Identities=11% Similarity=0.096 Sum_probs=55.3
Q ss_pred CChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCcCccCceeEEEEEeeCCCCC--cceeeeecccc------------C
Q 008642 113 PSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA--TDIVVLVGNFN------------M 178 (558)
Q Consensus 113 ~S~df~~l~~~ql~~l~~~~~~~a~~~vYl~~~~~~~~~~~~L~~v~~yp~~~~--~~~~~~~g~~~------------i 178 (558)
.+.|+..+++..++.+.+.++.+ ..++|+... ..+ .|..++.+..... ....+..++.. +
T Consensus 19 ~~~~~~~~l~~~~~~~~~~~~~~-~~~i~l~d~---~~~--~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (171)
T 3trc_A 19 AAPNLEQALKLVVVRLCEALPAD-ACSLFICDD---VHG--EYVLMATQGLNSKQVGKLRLKFGEGLIGLVGEREEPINL 92 (171)
T ss_dssp HCSSHHHHHHHHHHHHHHHTTCS-EEEEEEEET---TTT--EEEEEEEESSCGGGTTTCEEETTCHHHHHHHHHTSCEEE
T ss_pred cccCHHHHHHHHHHHHHHHhCCc-EEEEEEEEC---CCC--eEEEEEecCCCccccccEeecCCCChhhHHHhcCCeEEe
Confidence 46688899999999999999555 444888761 123 3444454432211 11112111110 1
Q ss_pred CcchhHHHHhhhcccccccCCCceEEEeeeeCCeEEEEEEEec
Q 008642 179 PAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAEL 221 (558)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~lvlPL~~~~~vvGvLv~e~ 221 (558)
+.... ..................+++||+.++.++|+|++..
T Consensus 93 ~d~~~-~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~~~~ 134 (171)
T 3trc_A 93 ADAPL-HPAYKHRPELGEEDYHGFLGIPIIEQGELLGILVIQQ 134 (171)
T ss_dssp SCGGG-STTCCCCGGGCCCCCCEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCCC-CCcccccccCCcccccEEEEEeEEECCEEEEEEEEee
Confidence 11000 0000000011123446789999999999999999993
No 42
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=96.65 E-value=0.0012 Score=64.91 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhccC--------------CCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCC
Q 008642 493 RQALSNLIEGALMRTQ--------------VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSP 550 (558)
Q Consensus 493 ~qVL~NLI~NAlkyt~--------------~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~ 550 (558)
..+|..||+||+++.. .+..+.|.+... .+.-.|.|.|||+||+.+++...|..+++
T Consensus 34 ~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d-~~~~~i~I~DnG~GMt~edl~~~l~~ia~ 104 (236)
T 2gqp_A 34 EIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCD-KEKNLLHVTDTGVGMTREELVKNLGTIAK 104 (236)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEE-TTTTEEEEEECSCCCCHHHHHHHHHCC--
T ss_pred hHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEc-CCCCEEEEEECCcCCCHHHHHHHHhhhcc
Confidence 3668889999998853 123334444334 33357899999999999999888866643
No 43
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=96.64 E-value=0.0022 Score=67.60 Aligned_cols=51 Identities=20% Similarity=0.207 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHhhccC---CCCEEEEEEEEecCCeEEEEEEecCCCCCHh
Q 008642 489 EPALRQALSNLIEGALMRTQ---VGGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (558)
Q Consensus 489 ~~~L~qVL~NLI~NAlkyt~---~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e 539 (558)
...+..++.+|+.||++|+. .++.|.|.+....++.+.|.|+|+|+|+++.
T Consensus 295 ~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~ 348 (399)
T 3ke6_A 295 IADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHR 348 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTSEEEEEEEESCBC----
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCCEEEEEEEECCCCCCCC
Confidence 46789999999999999983 3678999886553457999999999999976
No 44
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=96.61 E-value=0.035 Score=50.13 Aligned_cols=28 Identities=11% Similarity=0.103 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHhhhhhcCCceEE-EEEec
Q 008642 115 PDFQRLCVEQLHLFRRIVDPDAVLS-VYVRP 144 (558)
Q Consensus 115 ~df~~l~~~ql~~l~~~~~~~a~~~-vYl~~ 144 (558)
.|+..+.+..++.+...+ ++..+ +|+..
T Consensus 27 ~d~~~~l~~i~~~~~~~~--~a~~~~i~l~d 55 (189)
T 2e4s_A 27 VAIDSLLEHIMIYAKNLV--NADRCALFQVD 55 (189)
T ss_dssp SCHHHHHHHHHHHHHHHH--TEEEEEEEEEE
T ss_pred cCHHHHHHHHHHHHHHHh--CCCeEEEEEEE
Confidence 489999999999999999 55555 88876
No 45
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=96.58 E-value=0.0014 Score=65.57 Aligned_cols=56 Identities=21% Similarity=0.213 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhccC--------------CCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCCC
Q 008642 494 QALSNLIEGALMRTQ--------------VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYSP 550 (558)
Q Consensus 494 qVL~NLI~NAlkyt~--------------~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~ 550 (558)
.+|..||+||+++.. .+..|.|.+... .+.-.|.|.|||+||+.+++...|..+++
T Consensus 71 ~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d-~~~~~I~I~DnG~GMs~edL~~~l~~ia~ 140 (264)
T 1yc1_A 71 IFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPN-KQDRTLTIVDTGIGMTKADLINNLGTIAK 140 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEE-TTTTEEEEEECSCCCCHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEEC-CCeeEEEEEECCcCCCHHHHHHHHHhhcc
Confidence 478999999998864 124555555433 33456999999999999998877766543
No 46
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=96.58 E-value=0.012 Score=52.55 Aligned_cols=104 Identities=13% Similarity=0.114 Sum_probs=54.2
Q ss_pred ccCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCcCccCceeEEEEEeeCCCCCcceeeeecccc------------C
Q 008642 111 VLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFN------------M 178 (558)
Q Consensus 111 ~~~S~df~~l~~~ql~~l~~~~~~~a~~~vYl~~~~~~~~~~~~L~~v~~yp~~~~~~~~~~~g~~~------------i 178 (558)
+..+.++..+.+..++.+...++.+ ..++|+...+ ...+.....++........+..++.. +
T Consensus 24 l~~~~~~~~~l~~i~~~~~~~~~~~-~~~i~l~d~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 97 (181)
T 3e0y_A 24 VSSDFDLPEVLQHVTAKVATQLKVS-VCNIYLREGD-----EVVLAATHGFDPAFIGKIRIKIGDGITGSVARDGQYISL 97 (181)
T ss_dssp HSTTSCHHHHHHHHHHHHHHHTTCS-CEEEEEEETT-----EEEEEEEESSCGGGTTTCEEETTTSSHHHHHHHCCCEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHhCCC-eEEEEEEcCC-----CceEEEecCCCHHHhccccccCCCCeeeehhhcCCeEEe
Confidence 3446788999999999999999555 5558887621 12444444433221111122222110 0
Q ss_pred CcchhHHHHhhhcccccccCCCceEEEeeeeCCeEEEEEEEec
Q 008642 179 PAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAEL 221 (558)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~lvlPL~~~~~vvGvLv~e~ 221 (558)
+.....+ ................+++||+.++.++|+|++..
T Consensus 98 ~d~~~~~-~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~ 139 (181)
T 3e0y_A 98 SRASQDP-RYRYFPELQEEKYNSMLSFPIGDKKEVYGVINLNT 139 (181)
T ss_dssp EEECCCC-CC---------CEEEEEEEEEECSSCEEEEEEEEE
T ss_pred cCcccCc-cccccccccccCcceEEEEEEEeCCeEEEEEEEee
Confidence 0000000 00000000011234689999999999999999983
No 47
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=96.55 E-value=0.028 Score=51.69 Aligned_cols=56 Identities=16% Similarity=0.062 Sum_probs=39.4
Q ss_pred CCCceEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCCcccchhhhhhhhhhhhcccCHHH
Q 008642 198 PEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQ 277 (558)
Q Consensus 198 ~~~~~lvlPL~~~~~vvGvLv~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~iq~~~~~~~~~~~f~~~q 277 (558)
.....+++||+.+|.++|+|.+.. . .+ .. |+++.
T Consensus 93 ~~~S~l~vPL~~~~~~iGvl~l~~-----------~-----------~~-~~-----------------------f~~~d 126 (165)
T 3o5y_A 93 DLKSILVIPIYSKNKRVGVLSIGR-----------K-----------QQ-ID-----------------------WSLDD 126 (165)
T ss_dssp TCCEEEEEEEECSSCEEEEEEEEE-----------S-----------SC-CC-----------------------CCHHH
T ss_pred CCCEEEEeCeeECCEEEEEEEEEe-----------C-----------CC-CC-----------------------CCHHH
Confidence 346789999999999999999993 1 11 11 66677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008642 278 RLNAINICRSLAMAYVMDQKSM 299 (558)
Q Consensus 278 r~~~~~ia~~lalA~~l~qr~~ 299 (558)
...+..+|.++++|..-.+.-+
T Consensus 127 ~~~l~~la~~~aiai~na~ly~ 148 (165)
T 3o5y_A 127 LAFLEQLTDHLAVSIENVELYG 148 (165)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888875433333
No 48
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=96.54 E-value=0.052 Score=50.10 Aligned_cols=96 Identities=14% Similarity=0.197 Sum_probs=58.1
Q ss_pred cccCChhHHHHHHHHHHHhhhhhc-CCceEEEEEecCCcCccCceeEEEEEeeCCCCCcceeeeecccc-----------
Q 008642 110 LVLPSPDFQRLCVEQLHLFRRIVD-PDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFN----------- 177 (558)
Q Consensus 110 ~~~~S~df~~l~~~ql~~l~~~~~-~~a~~~vYl~~~~~~~~~~~~L~~v~~yp~~~~~~~~~~~g~~~----------- 177 (558)
++....|+...-..-+.++...++ .+ ++|||+.+ ++++.|.+....|. ...+.+|+..
T Consensus 25 ll~~~~dl~~~L~~v~~ll~~~l~~~~-~~gfYL~~-----~~~L~l~~~~G~~a----~~ri~~GeGv~G~aa~~~~~i 94 (160)
T 3ksh_A 25 LIEDEHHMIAILSNMSALLNDNLDQIN-WVGFYLLE-----QNELILGPFQGHPA----CVHIPIGKGVCGTAVSERRTQ 94 (160)
T ss_dssp TTTTCCCHHHHHHHHHHHHHHHCSSCS-EEEEEEEE-----TTEEEEEEEEESCC----CSEEETTSHHHHHHHHHTSCE
T ss_pred HHcCCCCHHHHHHHHHHHHHHHcccCC-EEEEEEEE-----CCEEEEEeccCCcc----cEEeeCCCCHHHHHHhhCCEE
Confidence 445567788888888888888885 45 77799986 24566666655443 2233333221
Q ss_pred -CCcchhHHHHhhhcccccccCCCceEEEeeeeCCeEEEEEEEe
Q 008642 178 -MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAE 220 (558)
Q Consensus 178 -i~~~~~~a~~~~~~~~~~~~~~~~~lvlPL~~~~~vvGvLv~e 220 (558)
++.....+ ..+.+ .-....-+++||+.+++++|+|.+.
T Consensus 95 ~V~Dv~~~p-~~i~~----~~~~~Sei~VPI~~~g~viGVL~i~ 133 (160)
T 3ksh_A 95 VVADVHQFK-GHIAC----DANSKSEIVVPIFKDDKIIGVLDID 133 (160)
T ss_dssp EESCGGGST-TCCGG----GTTCSEEEEEEEEETTEEEEEEEEE
T ss_pred EECCcccCc-ccccc----CcccCceEEEEEEECCEEEEEEEEe
Confidence 11110000 00000 1124578999999999999999998
No 49
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=96.48 E-value=0.028 Score=50.57 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=24.2
Q ss_pred CChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 008642 113 PSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (558)
Q Consensus 113 ~S~df~~l~~~ql~~l~~~~~~~a~~~vYl~~ 144 (558)
.+.|+.++.+..++.+.+.++.+ .+++|+..
T Consensus 25 ~~~dld~ll~~i~~~~~~~l~ad-~~~i~l~d 55 (189)
T 2zmf_A 25 NIVAIDSLLEHIMIYAKNLVNAD-RCALFQVD 55 (189)
T ss_dssp CSSCHHHHHHHHHHHHHHHHTEE-EEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHhCCC-EEEEEEEe
Confidence 35688999999999999999444 44499876
No 50
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=96.41 E-value=0.053 Score=51.60 Aligned_cols=97 Identities=15% Similarity=0.157 Sum_probs=58.3
Q ss_pred ccccCChhHHHHHHHHHHHhhhhh-cCCceEEEEEecCCcCccCceeEEEEEeeCCCCCcceeeeecccc----------
Q 008642 109 NLVLPSPDFQRLCVEQLHLFRRIV-DPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFN---------- 177 (558)
Q Consensus 109 ~~~~~S~df~~l~~~ql~~l~~~~-~~~a~~~vYl~~~~~~~~~~~~L~~v~~yp~~~~~~~~~~~g~~~---------- 177 (558)
.++..+.|+..+...-++++...+ +.+ +.+||+... +++.+.+...++. ...+..|+..
T Consensus 36 ~ll~~~~dl~~~L~~v~~ll~~~l~~~~-~~~iyL~d~-----~~L~l~~~~G~~~----~~~i~~GeGi~G~aa~tg~~ 105 (195)
T 1vhm_A 36 ALMAGETSFLATLANTSALLYERLTDIN-WAGFYLLED-----DTLVLGPFQGKIA----CVRIPVGRGVCGTAVARNQV 105 (195)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHSSSCS-EEEEEEEET-----TEEEEEEEEESCC----CSEEETTSHHHHHHHHHTSC
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhCCCCC-EEEEEEEEC-----CEEEEEEecCccc----ceEecCCCChHHHHHhcCCE
Confidence 345567788899999999999888 343 556999872 4566666555543 2222222221
Q ss_pred --CCcchhHHHHhhhcccccccCCCceEEEeeeeCCeEEEEEEEe
Q 008642 178 --MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAE 220 (558)
Q Consensus 178 --i~~~~~~a~~~~~~~~~~~~~~~~~lvlPL~~~~~vvGvLv~e 220 (558)
++.....+ .... ..-.....+++||+.++.++|+|.+.
T Consensus 106 i~V~Dv~~~p-~~~~----~~~~~~S~l~VPI~~~g~viGVL~i~ 145 (195)
T 1vhm_A 106 QRIEDVHVFD-GHIA----CDAASNSEIVLPLVVKNQIIGVLDID 145 (195)
T ss_dssp EEESCTTTCT-TCCC----SCCCCSEEEEEEEEETTEEEEEEEEE
T ss_pred EEECCcccCc-chhh----cCCCccEEEEEeEeECCEEEEEEEec
Confidence 11110000 0000 01124678999999999999999988
No 51
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=96.37 E-value=0.033 Score=52.03 Aligned_cols=95 Identities=14% Similarity=0.053 Sum_probs=54.6
Q ss_pred ccCChhHHHHHHHHHHHhhhhhc-CCceEEEEEecCCcCccCceeEEEEEeeCCCCCcceeeeecccc------------
Q 008642 111 VLPSPDFQRLCVEQLHLFRRIVD-PDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFN------------ 177 (558)
Q Consensus 111 ~~~S~df~~l~~~ql~~l~~~~~-~~a~~~vYl~~~~~~~~~~~~L~~v~~yp~~~~~~~~~~~g~~~------------ 177 (558)
+....|+...-..-+.++...++ .+ ++|||+.+ ++++.|.+....|. ...+.+|+..
T Consensus 27 l~~~~dl~~~L~nv~~lL~~~l~~~~-~~gfYL~~-----~~~L~l~a~~G~~a----~~ri~~GeGv~G~va~tg~~i~ 96 (171)
T 3rfb_A 27 LEGETNVLANLSNASALIKSRFPNTV-FAGFYLFD-----GKELVLGPFQGGVS----CIRIALGKGVCGEAAHFQETVI 96 (171)
T ss_dssp HTTCCBHHHHHHHHHHHHHHHCTTEE-EEEEEEEC-----SSEEEEEEEESSSC----CCEEETTSHHHHHHHHTTSCEE
T ss_pred HcCCCCHHHHHHHHHHHHHHHccCCC-EEEEEEEE-----CCEEEEEeccCCcc----ceEeeCCcCHHHHHHhhCCEEE
Confidence 34566777777777778887773 23 56699986 24566666555543 2233222221
Q ss_pred CCcchhHHHHhhhcccccccCCCceEEEeeeeCCeEEEEEEEe
Q 008642 178 MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAE 220 (558)
Q Consensus 178 i~~~~~~a~~~~~~~~~~~~~~~~~lvlPL~~~~~vvGvLv~e 220 (558)
++.....+ ..+. -.-....-+++||+.+++++|+|.+.
T Consensus 97 V~Dv~~~p-~~i~----~~~~~~Sei~VPI~~~g~viGVL~i~ 134 (171)
T 3rfb_A 97 VGDVTTYL-NYIS----CDSLAKSEIVVPMMKNGQLLGVLDLD 134 (171)
T ss_dssp ESCTTSCS-SCCC----SCTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred ECCcccCc-cccc----cCcccCceEEEEEEECCEEEEEEEEe
Confidence 11110000 0000 01123467999999999999999998
No 52
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=96.27 E-value=0.041 Score=48.00 Aligned_cols=102 Identities=11% Similarity=0.007 Sum_probs=53.5
Q ss_pred cCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCcCccCceeEEEEEeeCCCCC--cceeeeecccc------------
Q 008642 112 LPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA--TDIVVLVGNFN------------ 177 (558)
Q Consensus 112 ~~S~df~~l~~~ql~~l~~~~~~~a~~~vYl~~~~~~~~~~~~L~~v~~yp~~~~--~~~~~~~g~~~------------ 177 (558)
..+.++.++.+..++.+...++.+ ...+|+.... .+ .+..++.+..... ....+..++..
T Consensus 20 ~~~~~~~~~l~~~~~~~~~~~~~~-~~~i~l~~~~---~~--~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (171)
T 3ci6_A 20 NSSVSLHDSLDIMVNQVADAMKVD-VCSIYLLDER---NQ--RYLLMASKGLNPESVGHVSLQLSEGLVGLVGQREEIVN 93 (171)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHTCS-EEEEEEEETT---TT--EEEEEEEESSCGGGTTTCEEETTSHHHHHHHHHTSCEE
T ss_pred hcCCCHHHHHHHHHHHHHHHhCCC-eEEEEEEeCC---CC--EEEEEeccCCCcccccceeeeccCCeehhhhccCceEE
Confidence 345678899999999999999444 4448887611 23 4555555432211 11111111110
Q ss_pred CCcchhHHHHhhhcccc-cccCCCceEEEeeeeCCeEEEEEEEec
Q 008642 178 MPAGLRAAEAALSSQQV-QVVPEQRAVVFPMVKHPFVVGFLVAEL 221 (558)
Q Consensus 178 i~~~~~~a~~~~~~~~~-~~~~~~~~lvlPL~~~~~vvGvLv~e~ 221 (558)
++.... . ......+. ...+-...+++||+.++.++|+|++..
T Consensus 94 ~~d~~~-~-~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~ 136 (171)
T 3ci6_A 94 LENASK-H-ERFAYLPETGEEIYNSFLGVPVMYRRKVMGVLVVQN 136 (171)
T ss_dssp ESSGGG-S-TTC---------CCCEEEEEEEEETTEEEEEEEEEE
T ss_pred ecCCCc-C-cchhccccccccccceEEEEeEEECCEEEEEEEEec
Confidence 110000 0 00000000 122345789999999999999999993
No 53
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=96.25 E-value=0.12 Score=46.16 Aligned_cols=33 Identities=15% Similarity=0.011 Sum_probs=25.9
Q ss_pred ccCChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 008642 111 VLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (558)
Q Consensus 111 ~~~S~df~~l~~~ql~~l~~~~~~~a~~~vYl~~ 144 (558)
+..+.|+..+.+..++.+.+.++.+ .+++|+..
T Consensus 15 l~~~~d~~~~l~~i~~~~~~~~~~~-~~~i~l~d 47 (177)
T 3k2n_A 15 IGTIRDPQELFRTVTDKLRLLFAFD-SAVIITID 47 (177)
T ss_dssp HTTCCSHHHHHHHHHHHHTTTCCCS-EEEEEEEE
T ss_pred HhcccCHHHHHHHHHHHHHHhcCCC-eEEEEEEc
Confidence 3456788999999999999999666 55588875
No 54
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=96.22 E-value=0.2 Score=43.92 Aligned_cols=102 Identities=10% Similarity=0.109 Sum_probs=57.3
Q ss_pred cCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCcCccCceeEEEEEeeCCCCC--cceeeee--cccc----------
Q 008642 112 LPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA--TDIVVLV--GNFN---------- 177 (558)
Q Consensus 112 ~~S~df~~l~~~ql~~l~~~~~~~a~~~vYl~~~~~~~~~~~~L~~v~~yp~~~~--~~~~~~~--g~~~---------- 177 (558)
..+.++.++++.-++.+.+.++.+ ...+|+.. .+...|...+.+..... ....+.+ ++..
T Consensus 12 ~~~~~~~~~l~~~~~~~~~~~~~~-~~~i~l~d-----~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (169)
T 3oov_A 12 QKSIDVDEVLRLCAEGLHDVLGYE-RVNILMAD-----TARTSLSFVAAVGTADFNPAGVVLPLDQRGGVITKCFTDRQV 85 (169)
T ss_dssp HHCCCHHHHHHHHHHHHHHTTCCS-EEEEEEEC-----TTSSEEEEEEEESCSSCCCTTCEEESSGGGHHHHHHHHHTCC
T ss_pred hhhcCHHHHHHHHHHHHHHhhCCc-eEEEEEEe-----CCCCeEEEEEEeCchhhhhhcccCCcccccchHHHHHhcCCC
Confidence 346788899999999999999555 55589875 22235556666553221 1122211 1110
Q ss_pred --CCcchhHHHHhhhc----ccccccCCCceEEEeeeeCCeEEEEEEEe
Q 008642 178 --MPAGLRAAEAALSS----QQVQVVPEQRAVVFPMVKHPFVVGFLVAE 220 (558)
Q Consensus 178 --i~~~~~~a~~~~~~----~~~~~~~~~~~lvlPL~~~~~vvGvLv~e 220 (558)
++.... ....... ...........+++||+.+++++|+|++.
T Consensus 86 ~~i~d~~~-~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~ 133 (169)
T 3oov_A 86 YMIDDVSA-YPTDFRLQSPYDAIRALRSKSFVICPIVVKGEAIGVFAVD 133 (169)
T ss_dssp EEESCGGG-SCGGGSCCTTGGGCGGGCCSSEEEEEEEETTEEEEEEEEE
T ss_pred EEeccccc-hhhhhhccccHHHHHhcCcCcEEEEEEEeCCcEEEEEEEE
Confidence 110000 0000000 01122345679999999999999999999
No 55
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=95.94 E-value=0.0079 Score=58.85 Aligned_cols=54 Identities=22% Similarity=0.218 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhccC--------------CCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCC
Q 008642 494 QALSNLIEGALMRTQ--------------VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAY 548 (558)
Q Consensus 494 qVL~NLI~NAlkyt~--------------~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF 548 (558)
-+|.-||+||.++.. .+..+.|.+... .+.-.|.|.|||.||+++++...|...
T Consensus 35 ~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d-~~~~~i~V~DnG~GMs~edl~~~l~~i 102 (228)
T 3t0h_A 35 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPN-KQDRTLTIVDTGIGMTKADLINNLGTI 102 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEE-TTTTEEEEEECSCCCCHHHHHTGGGSC
T ss_pred HHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEe-CCeeEEEEEeCCCCCCHHHHHHHHHhh
Confidence 457777888877642 123455555434 344569999999999999987766543
No 56
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=95.78 E-value=0.27 Score=42.14 Aligned_cols=97 Identities=16% Similarity=0.034 Sum_probs=52.7
Q ss_pred ChhHHHHHHHHHHHhhhhhcCCceEE-EEEecCCcCccCceeEEEEEeeCCCCC--cce-eeeeccc-----------c-
Q 008642 114 SPDFQRLCVEQLHLFRRIVDPDAVLS-VYVRPAGSYVMDRLELRRVVSYPGVNA--TDI-VVLVGNF-----------N- 177 (558)
Q Consensus 114 S~df~~l~~~ql~~l~~~~~~~a~~~-vYl~~~~~~~~~~~~L~~v~~yp~~~~--~~~-~~~~g~~-----------~- 177 (558)
+.|+.++.+.-++.+.+.+ ++..+ +|+.. + ++. |...+.+..... ... .+..++. .
T Consensus 4 ~~~~~~~l~~i~~~~~~~~--~~~~~~i~l~d--~--~~~--l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (153)
T 2w3g_A 4 DPDLEATLRAIVHSATSLV--DARYGAMEVHD--R--QHR--VLHFVYEGIDEETVRRIGHLPKGLGVIGLLIEDPKPLR 75 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHT--TEEEEEEEEEC--T--TCC--EEEEEEESCCHHHHHHHCSCCCSCTHHHHHHHSCSCEE
T ss_pred ccCHHHHHHHHHHHHHHHh--CCCEEEEEEEC--C--CCC--EEEEEEecCCHHHHHhhccCCCCCCHHHHHHhcCCcEE
Confidence 6788999999999999988 66655 88876 1 233 444444322110 000 0000000 0
Q ss_pred CCcchhHHHH-hhhcccccccCCCceEEEeeeeCCeEEEEEEEec
Q 008642 178 MPAGLRAAEA-ALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAEL 221 (558)
Q Consensus 178 i~~~~~~a~~-~~~~~~~~~~~~~~~lvlPL~~~~~vvGvLv~e~ 221 (558)
++.. ..+ ...........-...+++||+.++.++|+|++..
T Consensus 76 ~~d~---~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~ 117 (153)
T 2w3g_A 76 LDDV---SAHPASIGFPPYHPPMRTFLGVPVRVRDESFGTLYLTD 117 (153)
T ss_dssp ESSG---GGSTTCCCCCTTCCCCCCEEEEEEEETTEEEEEEEEEE
T ss_pred ecCc---ccCchhcCCCCcCCCCCeEEEeeEEECCEEEEEEEEee
Confidence 1110 000 0000111122345789999999999999999983
No 57
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=95.78 E-value=0.082 Score=48.74 Aligned_cols=33 Identities=18% Similarity=0.086 Sum_probs=27.8
Q ss_pred ccCChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 008642 111 VLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (558)
Q Consensus 111 ~~~S~df~~l~~~ql~~l~~~~~~~a~~~vYl~~ 144 (558)
+..|.|+.++++.-++.+++.++.| ++.+|.-.
T Consensus 6 Ir~sldl~~il~~~v~~v~~~l~~D-Rv~Iy~f~ 38 (171)
T 4glq_A 6 LSELRDRQAIFETLVAKGRELLACD-RVIVYAFD 38 (171)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHTCS-EEEEEEEC
T ss_pred HhhcCCHHHHHHHHHHHHHHHHCCC-eEEEEEEe
Confidence 3458899999999999999999988 88888765
No 58
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=95.77 E-value=0.0062 Score=58.43 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhccCC--CCEEEEEEEEecCCeEEEEEEecCCCCCHhH
Q 008642 493 RQALSNLIEGALMRTQV--GGKVEIVSAAAPAGDALVVIDDDGPDMHYMV 540 (558)
Q Consensus 493 ~qVL~NLI~NAlkyt~~--gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~ 540 (558)
..++.-||+||++..-. ...|.|.+ ..++ .|+|.|||.|||.++
T Consensus 19 ~~~v~Elv~NsiDa~~~g~a~~I~V~i--~~~g--~i~V~DnG~GIp~~~ 64 (201)
T 3fv5_A 19 NHLGQEVIDNSVDEALAGHAKRVDVIL--HADQ--SLEVIDDGRGMPVDI 64 (201)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEE--CTTS--CEEEEECSSCCCCSB
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEEE--eCCC--EEEEEECCCCcCccc
Confidence 55666666666666322 36788887 3344 599999999999987
No 59
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=95.77 E-value=0.0084 Score=63.29 Aligned_cols=56 Identities=11% Similarity=0.168 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhhcc--CCCCEEEEEEEEecCCeEEEEEEecCCCCCHhH--------HHhcccCCCC
Q 008642 491 ALRQALSNLIEGALMRT--QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMV--------IIANFAAYSP 550 (558)
Q Consensus 491 ~L~qVL~NLI~NAlkyt--~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~--------~~~IFepF~~ 550 (558)
.+..++.-||+||++.. .....|.|.+ ..++ .|+|.|||.|||.+. .+-+|..+..
T Consensus 34 gl~~lv~ElvdNsiDea~~g~a~~I~V~i--~~~g--~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lha 99 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALAGHCKEIIVTI--HADN--SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHA 99 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEEE--CTTS--CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTE
T ss_pred CHHHHHHHHHHhHHHHHhcCCCCEEEEEE--eCCC--EEEEEECCCCcccCcccccCcchHHHhheeccc
Confidence 44455555555555442 2246788888 4344 699999999999988 3447775544
No 60
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=95.68 E-value=0.015 Score=55.73 Aligned_cols=48 Identities=13% Similarity=0.302 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHHHHhhcc--CCCCEEEEEEEEecCCeEEEEEEecCCCCCHh
Q 008642 488 EEPALRQALSNLIEGALMRT--QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (558)
Q Consensus 488 D~~~L~qVL~NLI~NAlkyt--~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e 539 (558)
+...+..++.-||+||++.. .....|.|.+ ..++ .|+|.|||.|||.+
T Consensus 28 ~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i--~~~g--~i~V~DnG~Gip~~ 77 (198)
T 3ttz_A 28 SERGLHHLVWEIVDNSIDEALAGYANQIEVVI--EKDN--WIKVTDNGRGIPVD 77 (198)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEE--EGGG--EEEEEECSSCCCCS
T ss_pred CCcchHHHHHHHHHHHHhHHhcCCCcEEEEEE--eCCC--eEEEEECCCCcccc
Confidence 45777888888888888753 2246888887 3344 69999999999986
No 61
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=95.53 E-value=0.34 Score=43.21 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=20.0
Q ss_pred CceEEEeeeeCCeEEEEEEEec
Q 008642 200 QRAVVFPMVKHPFVVGFLVAEL 221 (558)
Q Consensus 200 ~~~lvlPL~~~~~vvGvLv~e~ 221 (558)
...+++||..++.++|+|++..
T Consensus 85 ~s~l~vPL~~~~~~~GvL~l~~ 106 (149)
T 2vjw_A 85 GPALVLPLRATDTVAGVLVAVQ 106 (149)
T ss_dssp EEEEEEEEEETTEEEEEEEEEE
T ss_pred CeEEEEEEccCCeEEEEEEEee
Confidence 4789999999999999999983
No 62
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=95.47 E-value=0.36 Score=41.83 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=19.3
Q ss_pred CceEEEeeeeCCeEEEEEEEe
Q 008642 200 QRAVVFPMVKHPFVVGFLVAE 220 (558)
Q Consensus 200 ~~~lvlPL~~~~~vvGvLv~e 220 (558)
...+++||+.++.++|+|.+.
T Consensus 91 ~s~~~vPl~~~~~~iGvl~~~ 111 (151)
T 3hcy_A 91 AALGFFPLVTEGRLIGKFMTY 111 (151)
T ss_dssp CEEEEEEEESSSSEEEEEEEE
T ss_pred hheEEeceEECCEEEEEEEEe
Confidence 468999999999999999988
No 63
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=95.42 E-value=0.12 Score=47.04 Aligned_cols=100 Identities=14% Similarity=0.108 Sum_probs=55.0
Q ss_pred cCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCcCccCceeEEEEEe-eCCCCCcceee----eec------ccc-CC
Q 008642 112 LPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVS-YPGVNATDIVV----LVG------NFN-MP 179 (558)
Q Consensus 112 ~~S~df~~l~~~ql~~l~~~~~~~a~~~vYl~~~~~~~~~~~~L~~v~~-yp~~~~~~~~~----~~g------~~~-i~ 179 (558)
..+.|+..+.+..++.+.+.++.+ .+++|+-+ ++ ++..++. |+........+ +.| ... ++
T Consensus 40 ~~~~dl~~il~~i~~~l~~~l~~d-~~~i~l~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 111 (184)
T 3p01_A 40 QASNSLEAILTPIATAFAESFAVN-ACILQMLE-----GQ--TLSTIQGFYSQQGTVNNWLNQDPLTNEAIATGQIQVAA 111 (184)
T ss_dssp HHCSSSHHHHHHHHHHHHHHHTCS-EEEEEEEE-----TT--EEEEEEEEEESSSSCCCCGGGCHHHHHHHHHCSCEEES
T ss_pred HhcCCHHHHHHHHHHHHHHHhCCC-eEEEEEec-----CC--ceeeeeeeccccCccCcccCCCcHHHHHHhhCCeEEEe
Confidence 346778889999999999999766 66688865 22 2344443 66533211100 000 000 11
Q ss_pred cchhHHHHhhhcccccccCCCceEEEeeeeCCeEEEEEEEe
Q 008642 180 AGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAE 220 (558)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~lvlPL~~~~~vvGvLv~e 220 (558)
.....+ ................+++||+.++.++|+|.+.
T Consensus 112 d~~~~~-~~~~~~~~~~~~~~s~l~vPL~~~~~~~GvL~l~ 151 (184)
T 3p01_A 112 NIAKDP-KLASISQYQDNGIQSHVVIPITYRNEMLGVLSLQ 151 (184)
T ss_dssp CGGGCH-HHHTCHHHHHHTCCEEEEEEEEETTEEEEEEEEE
T ss_pred ccccCc-cccchhHHHHhCccEEEEEEEEECCEEEEEEEeC
Confidence 110000 0000000111244678999999999999999997
No 64
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=95.30 E-value=0.65 Score=46.75 Aligned_cols=100 Identities=15% Similarity=0.082 Sum_probs=52.8
Q ss_pred CChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCcCccCceeEEEEEeeCCCCCcceeeeecccc------------CCc
Q 008642 113 PSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFN------------MPA 180 (558)
Q Consensus 113 ~S~df~~l~~~ql~~l~~~~~~~a~~~vYl~~~~~~~~~~~~L~~v~~yp~~~~~~~~~~~g~~~------------i~~ 180 (558)
.+.|+..+++..++.+.+.++.+ ..++|+... +..++...+.+.........+..|... ++.
T Consensus 24 ~~~dl~~~l~~i~~~~~~~~~~~-~~~i~l~d~-----~~~~l~~~~~~g~~~~~~~~~~~~~g~~g~~~~~~~~~~i~d 97 (368)
T 1mc0_A 24 FDLDATSLQLKVLQYLQQETQAT-HCCLLLVSE-----DNLQLSCKVIGDKVLGEEVSFPLTMGRLGQVVEDKQCIQLKD 97 (368)
T ss_dssp CCSSHHHHHHHHHHHHHHHSCEE-EEEEEEECS-----SSCEEEEEEETTEEEEEEEEEESSSSSHHHHHHHCCCEEGGG
T ss_pred hhhhHHHHHHHHHHHHHHHhCCc-EEEEEEEeC-----CCCeEEEEecCCCccccceeeccccCHHHHHHhcCCeEEecc
Confidence 36689999999999999998433 444998762 222444433321100001111111110 111
Q ss_pred chhHHHHhhhcccccccCCCceEEEeeeeC--CeEEEEEEEe
Q 008642 181 GLRAAEAALSSQQVQVVPEQRAVVFPMVKH--PFVVGFLVAE 220 (558)
Q Consensus 181 ~~~~a~~~~~~~~~~~~~~~~~lvlPL~~~--~~vvGvLv~e 220 (558)
......... ......+....+++||+.+ +.++|+|.+.
T Consensus 98 ~~~~~~~~~--~~~~~~~~~s~l~vPl~~~~~~~~~Gvl~l~ 137 (368)
T 1mc0_A 98 LTSDDVQQL--QNMLGCELQAMLCVPVISRATDQVVALACAF 137 (368)
T ss_dssp SCHHHHHHH--HHHHCSCCCCEEEEEEECTTTCSEEEEEEEE
T ss_pred ccccccccc--ccccCcccceEEEEEeecCCCCcEEEEEEee
Confidence 110000000 0111234568999999999 9999999977
No 65
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=95.23 E-value=0.016 Score=57.64 Aligned_cols=51 Identities=24% Similarity=0.228 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhccC--------------CCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcc
Q 008642 494 QALSNLIEGALMRTQ--------------VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANF 545 (558)
Q Consensus 494 qVL~NLI~NAlkyt~--------------~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IF 545 (558)
-+|.-||+||.++.. .+..+.|.+... .+.-.|.|.|||+||+.+++...|
T Consensus 63 iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d-~~~~~I~I~DnG~GMt~edl~~~l 127 (256)
T 3o0i_A 63 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPN-KQDRTLTIVDTGIGMTKADLINNL 127 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEE-TTTTEEEEEECSCCCCHHHHHTHH
T ss_pred HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEc-CCceEEEEecCCCCcCHHHHHHHH
Confidence 456667777776642 223455555434 344579999999999999986544
No 66
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=95.08 E-value=1.5 Score=47.75 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=26.2
Q ss_pred ChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 008642 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (558)
Q Consensus 114 S~df~~l~~~ql~~l~~~~~~~a~~~vYl~~ 144 (558)
|.++.++|+.-++.+++.++.| ++++|==.
T Consensus 150 sl~l~~il~~~v~evr~ll~~D-RVmIYrF~ 179 (520)
T 3zq5_A 150 QANLRDFYDVIVEEVRRMTGFD-RVMLYRFD 179 (520)
T ss_dssp SCCHHHHHHHHHHHHHHHHCCS-EEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHHhCCC-EEEEEEEc
Confidence 5688999999999999999999 88888654
No 67
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=95.03 E-value=0.69 Score=50.24 Aligned_cols=30 Identities=20% Similarity=0.158 Sum_probs=26.2
Q ss_pred ChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 008642 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (558)
Q Consensus 114 S~df~~l~~~ql~~l~~~~~~~a~~~vYl~~ 144 (558)
|.++.++|+.-++.+++.++.| ++++|==.
T Consensus 137 sl~l~~il~~~v~evr~ll~~D-RV~IYrF~ 166 (505)
T 3nhq_A 137 HNDTASLLSNVTDELRRMTGYD-RVMAYRFR 166 (505)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCS-EEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHHhCCC-eEEEEEec
Confidence 5688999999999999999999 88888654
No 68
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=95.01 E-value=0.02 Score=57.55 Aligned_cols=50 Identities=28% Similarity=0.282 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhccC--------------CCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhc
Q 008642 494 QALSNLIEGALMRTQ--------------VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIAN 544 (558)
Q Consensus 494 qVL~NLI~NAlkyt~--------------~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~I 544 (558)
-+|.-||+||.++.. .++.+.|.+... .+.-.|.|.|||+||+.+++..-
T Consensus 49 ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d-~~~~tLtI~DNGiGMt~edL~~~ 112 (281)
T 3peh_A 49 VFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISAN-KEKNILSITDTGIGMTKVDLINN 112 (281)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEE-TTTTEEEEEECSCCCCHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEc-CCCcEEEEEeCCCCCCHHHHHHH
Confidence 346667777766642 223444444334 33346899999999999987543
No 69
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=94.93 E-value=0.028 Score=61.89 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhcc----------------CCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCCC
Q 008642 494 QALSNLIEGALMRT----------------QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAYS 549 (558)
Q Consensus 494 qVL~NLI~NAlkyt----------------~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~ 549 (558)
.+|.-||+||+++. .....|.|.+ ..++ -.|+|.|||+||+.+++..-|....
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~--d~~~-~~I~I~DnGiGMt~edl~~~l~tiA 98 (559)
T 1y4s_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF--DKDK-RTLTISDNGVGMTRDEVIDHLGTIA 98 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEE--ETTT-TEEEEEECSSCCCHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEE--eCCC-cEEEEEECCCCCCHHHHHHHHhhhc
Confidence 56888899998886 1223566655 4333 4799999999999999877776553
No 70
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=94.85 E-value=0.14 Score=45.90 Aligned_cols=133 Identities=13% Similarity=-0.005 Sum_probs=70.8
Q ss_pred cCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCcCccCceeEEEEEeeCCCCCcceee-eecccc------------C
Q 008642 112 LPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVV-LVGNFN------------M 178 (558)
Q Consensus 112 ~~S~df~~l~~~ql~~l~~~~~~~a~~~vYl~~~~~~~~~~~~L~~v~~yp~~~~~~~~~-~~g~~~------------i 178 (558)
..+.|+..+.+.-++.+.+.++.+ ...+|+.+ + .+.+.+.....+|......... ..|+.. +
T Consensus 13 ~~~~~~~~~l~~i~~~~~~~~~~~-~~~i~l~~--~--~~~l~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 87 (181)
T 2qyb_A 13 NRTLDLQIIMDDLLNLLLKEFKLD-LAVIRLVD--E--KGVLRVRSYSGKGIAGIAGKDWEPEIETYIGEAFLSNRLQFV 87 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCS-EEEEEEEC--T--TSCEEEEEEEESCTTSTTCSCBCCCTTSHHHHHHHHTSCEEE
T ss_pred HhccCHHHHHHHHHHHHHHHhCCc-EEEEEEEC--C--CCCEEEEEEeCCCcceecccccccCCCCchhhhhhcCCCEEe
Confidence 346788888888899999888444 33377653 1 3445555444444321100000 001110 0
Q ss_pred CcchhHHHHhhhcccccccCCCceEEEeeeeCCe-EEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCCccc
Q 008642 179 PAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPF-VVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTES 257 (558)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~lvlPL~~~~~-vvGvLv~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 257 (558)
+........ ..........-...+++||..++. ++|+|.+.. .. .+..
T Consensus 88 ~d~~~~~~~-~~~~~~~~~g~~s~~~vPl~~~~~~~~GvL~l~~----------~~-----------~~~~--------- 136 (181)
T 2qyb_A 88 NDTQYMTKP-LTRELMQKEGIKSFAHIPISRKGEPPFGILSVFS----------RT-----------IVGL--------- 136 (181)
T ss_dssp SCGGGCSCH-HHHHHHHHTTCCEEEEEEECCTTSCCCEEEEEEE----------SS-----------CSSC---------
T ss_pred cChhcCCch-hhHHHHHhcCcceEEEEEEEeCCCeEEEEEEEec----------CC-----------CCCC---------
Confidence 000000000 000000011235688999999999 999999982 01 1111
Q ss_pred chhhhhhhhhhhhcccCHHHHHHHHHHHHHHHHHHHHH
Q 008642 258 HAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMD 295 (558)
Q Consensus 258 ~~iq~~~~~~~~~~~f~~~qr~~~~~ia~~lalA~~l~ 295 (558)
|+++....+..+|..+++|....
T Consensus 137 ---------------f~~~d~~lL~~la~~~a~al~~a 159 (181)
T 2qyb_A 137 ---------------FNEPFLNLLESLAGQLAQAVKIV 159 (181)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHHHHHC
T ss_pred ---------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888999988887543
No 71
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=94.81 E-value=0.022 Score=55.61 Aligned_cols=55 Identities=15% Similarity=0.344 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHHHHhhccCC--CCEEEEEEEEecCCeEEEEEEecCCCCCHhH-------HHhccc
Q 008642 488 EEPALRQALSNLIEGALMRTQV--GGKVEIVSAAAPAGDALVVIDDDGPDMHYMV-------IIANFA 546 (558)
Q Consensus 488 D~~~L~qVL~NLI~NAlkyt~~--gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~-------~~~IFe 546 (558)
+..-|..++.-+|+||++..-. ...|.|.+ ..++ .|+|.|||.|||.+. .+-+|.
T Consensus 37 ~~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i--~~~g--~i~V~DnG~GIp~~~h~~~~~~~e~v~t 100 (226)
T 4emv_A 37 DGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI--NKDG--SLTVQDHGRGMPTGMHAMGIPTVEVIFT 100 (226)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE--CTTS--CEEEEECSSCCCCSBCGGGCBHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHhcCCCcEEEEEE--eCCC--eEEEEEcCCCccccccccCceehheeEE
Confidence 3456666666666666665322 35677776 4344 499999999999987 555664
No 72
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=94.70 E-value=0.019 Score=60.06 Aligned_cols=47 Identities=15% Similarity=0.117 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHHHhhccCCC--CEEEEEEEEecCCeEEEEEEecCCCCCH
Q 008642 488 EEPALRQALSNLIEGALMRTQVG--GKVEIVSAAAPAGDALVVIDDDGPDMHY 538 (558)
Q Consensus 488 D~~~L~qVL~NLI~NAlkyt~~g--g~I~I~v~~~~~~~v~I~V~D~G~GI~~ 538 (558)
+...+..++.-||+||++..-.| ..|.|.+ ..++ .|+|.|||.|||.
T Consensus 27 ~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i--~~~g--~I~V~DnGrGIp~ 75 (369)
T 3cwv_A 27 GEYGLHHLVYFLLDVAYEEARRGECRDVVLEV--GGDG--SIALFCTSRTVTA 75 (369)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE--CTTS--CEEEEEEESSCCH
T ss_pred CCchHHHHHHHHHhhhHhHHhhCCCCEEEEEE--eCCC--EEEEEECCCCcCH
Confidence 66889999999999999864333 4677777 4344 6999999999998
No 73
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=94.68 E-value=0.017 Score=56.19 Aligned_cols=48 Identities=13% Similarity=0.203 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhhccC--CCCEEEEEEEEecCCeEEEEEEecCCCCCHhHH
Q 008642 490 PALRQALSNLIEGALMRTQ--VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVI 541 (558)
Q Consensus 490 ~~L~qVL~NLI~NAlkyt~--~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~ 541 (558)
..|..++.-||+||++..- ....|.|.+ ..++ .|+|.|||.|||.+..
T Consensus 34 ~gl~~lv~ElvdNsiDea~~g~~~~I~V~i--~~~g--~i~V~DnGrGIp~~~~ 83 (220)
T 4duh_A 34 TGLHHMVFEVVDNAIDEALAGHCKEIIVTI--HADN--SVSVQDDGRGIPTGIH 83 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCEEEEEE--CTTS--CEEEEECSSCCCCSEE
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEEE--eCCC--cEEEEECCcCcccccc
Confidence 4566666666666666532 235788877 4344 4999999999998863
No 74
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=94.61 E-value=0.51 Score=43.85 Aligned_cols=22 Identities=14% Similarity=0.409 Sum_probs=20.0
Q ss_pred CCceEEEeeee-CCeEEEEEEEe
Q 008642 199 EQRAVVFPMVK-HPFVVGFLVAE 220 (558)
Q Consensus 199 ~~~~lvlPL~~-~~~vvGvLv~e 220 (558)
....+++||+. ++.++|+|.+.
T Consensus 129 ~~S~l~vPi~~~~g~viGVL~l~ 151 (180)
T 1f5m_A 129 TKSEIVVPIISNDGKTLGVIDID 151 (180)
T ss_dssp CCEEEEEEEECTTSCEEEEEEEE
T ss_pred cceEEEEEEEcCCCeEEEEEEec
Confidence 46789999999 99999999998
No 75
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=94.42 E-value=0.035 Score=54.61 Aligned_cols=49 Identities=20% Similarity=0.192 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhccC--------------CCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHh
Q 008642 494 QALSNLIEGALMRTQ--------------VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIA 543 (558)
Q Consensus 494 qVL~NLI~NAlkyt~--------------~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~ 543 (558)
-+|.-||+||.++.. .+..+.|.+... .+.-.|.|.|||+||+++++..
T Consensus 42 ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d-~~~~~L~I~DnGiGMt~edL~~ 104 (239)
T 3nmq_A 42 IFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPN-PQERTLTLVDTGIGMTKADLIN 104 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEE-TTTTEEEEEECSCCCCHHHHHT
T ss_pred HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEe-CCccEEEEEeCCCCCCHHHHHH
Confidence 345566666665531 223444554334 3345689999999999999743
No 76
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=94.36 E-value=0.046 Score=57.77 Aligned_cols=49 Identities=14% Similarity=0.240 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHhhcc---CCCCEEEEEEEEecCCeEEEEEEecCCCCCHhH
Q 008642 489 EPALRQALSNLIEGALMRT---QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMV 540 (558)
Q Consensus 489 ~~~L~qVL~NLI~NAlkyt---~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~ 540 (558)
...|..++.-||+||++.. +....|.|.+ ..++ -.|+|.|||.|||.+.
T Consensus 50 ~~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i--~~~~-~~I~V~DnGrGIPv~~ 101 (400)
T 1zxm_A 50 VPGLYKIFDEILVNAADNKQRDPKMSCIRVTI--DPEN-NLISIWNNGKGIPVVE 101 (400)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEE--ETTT-TEEEEEEESSCCCCSE
T ss_pred cchHHHHHHHHHhhHHhHHhhcCCCceEEEEE--ECCC-CEEEEEECCCcccCcc
Confidence 4578888888888888875 3356788888 3332 2599999999999886
No 77
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=94.27 E-value=0.042 Score=61.23 Aligned_cols=51 Identities=20% Similarity=0.178 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhcc----------------CCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccC
Q 008642 494 QALSNLIEGALMRT----------------QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAA 547 (558)
Q Consensus 494 qVL~NLI~NAlkyt----------------~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFep 547 (558)
.+|.-||+||+++. .....|.|.+ ..++ -.|+|.|||+||+.+++..-|..
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~--d~~~-~~I~I~DnGiGMt~edl~~~l~t 96 (624)
T 2ioq_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF--DKDK-RTLTISDNGVGMTRDEVIDHLGT 96 (624)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEE--ETTT-TEEEEEECSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEE--eCCC-cEEEEEECCCCCCHHHHHHHHHh
Confidence 56888999999886 1123566655 4333 57899999999999997766543
No 78
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=94.09 E-value=1.2 Score=41.12 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=23.7
Q ss_pred cCChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 008642 112 LPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (558)
Q Consensus 112 ~~S~df~~l~~~ql~~l~~~~~~~a~~~vYl~~ 144 (558)
..+.|+.++.+.-++.+.+.++.| ++++|+-.
T Consensus 26 ~~~~dl~~il~~~~~~l~~~l~~d-r~~i~~~d 57 (208)
T 2lb5_A 26 RQSLELDQILRATVEEVRAFLGTD-RVKVYRFD 57 (208)
T ss_dssp -----CHHHHHHHHHHHHHHHCCS-EEEEEECC
T ss_pred HHcCCHHHHHHHHHHHHHHHHCCC-EEEEEEEc
Confidence 447789999999999999999777 77788865
No 79
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=93.99 E-value=0.056 Score=60.62 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=39.2
Q ss_pred EEECHHHHHHHHHHHHHHHhhccC--------------CC--CEEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccC
Q 008642 485 VAVEEPALRQALSNLIEGALMRTQ--------------VG--GKVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAA 547 (558)
Q Consensus 485 V~~D~~~L~qVL~NLI~NAlkyt~--------------~g--g~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFep 547 (558)
++.|+ .-+|.-||+||+++.. .. ..|.|.+ ..++ -.|+|.|||+||+.+++..-|..
T Consensus 42 LYsn~---eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~--d~~~-~~I~I~DnGiGMt~edl~~~l~t 114 (666)
T 2o1u_A 42 LYKNK---EIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC--DKEK-NLLHVTDTGVGMTREELVKNLGT 114 (666)
T ss_dssp TSSSC---TTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEE--ETTT-TEEEEEECSCCCCHHHHHHHTTC
T ss_pred ccCCc---hHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEE--eCCC-CEEEEEECCCCCCHHHHHHHHhh
Confidence 44455 3568888999988861 12 3455554 4333 46899999999999998776644
No 80
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=93.82 E-value=0.051 Score=60.97 Aligned_cols=51 Identities=24% Similarity=0.276 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhccC--------------CCC--EEEEEEEEecCCeEEEEEEecCCCCCHhHHHhcccCC
Q 008642 495 ALSNLIEGALMRTQ--------------VGG--KVEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFAAY 548 (558)
Q Consensus 495 VL~NLI~NAlkyt~--------------~gg--~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF 548 (558)
+|.-||+||.++.. .++ .|.|.+ ..++ -.|+|.|||+||+.+++..-|...
T Consensus 30 fLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~--d~~~-~~I~I~DnGiGMt~edl~~~l~tI 96 (677)
T 2cg9_A 30 FLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITP--KPEQ-KVLEIRDSGIGMTKAELINNLGTI 96 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEE--EGGG-TEEEEEECSCCCCHHHHHGGGSSS
T ss_pred HHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEE--eCCC-CEEEEEECCCCCCHHHHHHHHHhH
Confidence 67888999988862 122 455554 4233 469999999999999987766443
No 81
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=93.68 E-value=0.57 Score=42.76 Aligned_cols=32 Identities=6% Similarity=0.257 Sum_probs=25.7
Q ss_pred ccCCh-hHHHHHHHHHHHhhhhhcCCceEE-EEEec
Q 008642 111 VLPSP-DFQRLCVEQLHLFRRIVDPDAVLS-VYVRP 144 (558)
Q Consensus 111 ~~~S~-df~~l~~~ql~~l~~~~~~~a~~~-vYl~~ 144 (558)
+..+. |+.++.+..++.+...+ +|..+ +|+..
T Consensus 16 l~~~~~dl~~ll~~il~~~~~~~--~a~~~~i~L~d 49 (180)
T 3dba_A 16 IQDEAGSMEKIVHKTLQRLSQLL--AADRCSMFICR 49 (180)
T ss_dssp SCSSSSHHHHHHHHHHHHHHHHH--TEEEEEEEEEE
T ss_pred HHHhhhcHHHHHHHHHHHHHHHh--CcceEEEEEEe
Confidence 34466 99999999999999999 55555 99976
No 82
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=93.50 E-value=1 Score=46.36 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=25.7
Q ss_pred ChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 008642 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (558)
Q Consensus 114 S~df~~l~~~ql~~l~~~~~~~a~~~vYl~~ 144 (558)
|.|+.++|+.-++.+++.++.| ++.+|==.
T Consensus 159 sl~l~~il~~tv~evr~ll~~D-RV~IYrF~ 188 (337)
T 2ool_A 159 AADLPTACWIAASEVRRITGFD-RIKVYQFA 188 (337)
T ss_dssp CCSHHHHHHHHHHHHHHHHCCS-EEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHHhCCC-eeEEEEEc
Confidence 5678999999999999999999 88888643
No 83
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=93.47 E-value=1.6 Score=48.45 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=27.8
Q ss_pred cCChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 008642 112 LPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (558)
Q Consensus 112 ~~S~df~~l~~~ql~~l~~~~~~~a~~~vYl~~ 144 (558)
..|.|+.++|+.-+..+.+.++.| +++||-=.
T Consensus 142 ~~s~~l~~i~~~~v~evr~l~~~D-Rv~iy~F~ 173 (635)
T 4eho_A 142 RTAGSLRALCDDTALLFQQCTGYD-RVMVYRFD 173 (635)
T ss_dssp HHCCSHHHHHHHHHHHHHHHSCCS-EEEEEEEC
T ss_pred HhhCCHHHHHHHHHHHHHHHhCCC-eEEEEEEC
Confidence 347889999999999999999999 99988754
No 84
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=93.24 E-value=3.7 Score=41.79 Aligned_cols=23 Identities=9% Similarity=0.132 Sum_probs=19.8
Q ss_pred CCceEEEeeee-CCeEEEEEEEec
Q 008642 199 EQRAVVFPMVK-HPFVVGFLVAEL 221 (558)
Q Consensus 199 ~~~~lvlPL~~-~~~vvGvLv~e~ 221 (558)
....+++||+. +|.++|+|++..
T Consensus 119 ~~s~l~vPl~~~~g~~iGvl~l~~ 142 (398)
T 1ykd_A 119 TYTMLALPLLSEQGRLVAVVQLLN 142 (398)
T ss_dssp CSCEEEEEEECSSCCEEEEEEEEE
T ss_pred CceEEEEEEECCCCCEEEEEEEec
Confidence 45789999996 699999999983
No 85
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=92.98 E-value=2.1 Score=42.96 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.2
Q ss_pred CCceEEEeeeeC-CeEEEEEEEec
Q 008642 199 EQRAVVFPMVKH-PFVVGFLVAEL 221 (558)
Q Consensus 199 ~~~~lvlPL~~~-~~vvGvLv~e~ 221 (558)
....+++||+.+ +.++|+|.+..
T Consensus 286 ~~s~l~vPl~~~~~~~iGvl~l~~ 309 (368)
T 1mc0_A 286 TRNILCFPIKNENQEVIGVAELVN 309 (368)
T ss_dssp CCCEEEEEEECTTSCEEEEEEEEE
T ss_pred cceEEEEeeECCCCcEEEEEEEEE
Confidence 368999999995 99999999983
No 86
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=92.96 E-value=0.84 Score=46.68 Aligned_cols=151 Identities=13% Similarity=0.088 Sum_probs=77.9
Q ss_pred ChhHHHHHHHHHHHhhhhhcCCceEE-EEEecCCcCccCceeEEEEEeeCCCCCcceeeeecccc------------CC-
Q 008642 114 SPDFQRLCVEQLHLFRRIVDPDAVLS-VYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFN------------MP- 179 (558)
Q Consensus 114 S~df~~l~~~ql~~l~~~~~~~a~~~-vYl~~~~~~~~~~~~L~~v~~yp~~~~~~~~~~~g~~~------------i~- 179 (558)
+.++..+.+..++.+.+.+ ++..+ +|+.... ..+|...+..++.......+..|+.. ++
T Consensus 212 ~~dl~~~l~~i~~~~~~~~--~~~~~~i~l~d~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~ 284 (398)
T 1ykd_A 212 SLDLEDTLKRVMDEAKELM--NADRSTLWLIDRD-----RHELWTKITQDNGSTKELRVPIGKGFAGIVAASGQKLNIPF 284 (398)
T ss_dssp CCCHHHHHHHHHHHHHHHT--TEEEEEEEEEETT-----TTEEEEEEECSSSCEEEEEEETTSHHHHHHHHHCCCEEECS
T ss_pred cCCHHHHHHHHHHHHHHHh--CcCeEEEEEEECC-----CCEEEEEEecCCCceeeeeccCCCchhhHHhccCCeEEecc
Confidence 6688888999999999888 55555 9987621 22444444422211111111111110 11
Q ss_pred cchhHHHHhhhc---ccccccCCCceEEEeee-eCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCCc
Q 008642 180 AGLRAAEAALSS---QQVQVVPEQRAVVFPMV-KHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDT 255 (558)
Q Consensus 180 ~~~~~a~~~~~~---~~~~~~~~~~~lvlPL~-~~~~vvGvLv~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (558)
...... ..... ...........+++||+ .++.++|+|.+..... .|..+...+ +.|...+
T Consensus 285 d~~~~~-~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~----------~~~~~~~~~-~~~~~~~---- 348 (398)
T 1ykd_A 285 DLYDHP-DSATAKQIDQQNGYRTCSLLCMPVFNGDQELIGVTQLVNKKK----------TGEFPPYNP-ETWPIAP---- 348 (398)
T ss_dssp CGGGST-TCHHHHHHHHHHTCCCCCEEEEEEECSSSCEEEEEEEEEECC----------SSCCCCCCG-GGTTCCC----
T ss_pred ccccCc-ccCcccchhhhcCCeeeeEEEEeeecCCCCEEEEEEEEecCC----------ccccccccc-ccccccc----
Confidence 110000 00000 00012234679999999 4999999999984110 011111111 3343311
Q ss_pred ccchhhhhhhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008642 256 ESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKS 298 (558)
Q Consensus 256 e~~~iq~~~~~~~~~~~f~~~qr~~~~~ia~~lalA~~l~qr~ 298 (558)
+ .....|+.++...+..+|..+++|....+..
T Consensus 349 ~-----------~~~~~f~~~d~~ll~~la~~~a~al~na~l~ 380 (398)
T 1ykd_A 349 E-----------CFQASFDRNDEEFMEAFNIQAGVALQNAQLF 380 (398)
T ss_dssp G-----------GGCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-----------ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0111388899999999999999888544433
No 87
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=92.40 E-value=0.15 Score=54.12 Aligned_cols=49 Identities=10% Similarity=0.216 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhhcc---CCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHH
Q 008642 490 PALRQALSNLIEGALMRT---QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVI 541 (558)
Q Consensus 490 ~~L~qVL~NLI~NAlkyt---~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~ 541 (558)
..|..++.-+|+||++.. +....|.|.+ ..++ -.|+|.|||.|||.+..
T Consensus 63 ~GL~~lv~EivdNaiDe~~~~g~~~~I~V~i--~~d~-~sI~V~DnGrGIPv~~h 114 (418)
T 1pvg_A 63 PGLFKIFDEILVNAADNKVRDPSMKRIDVNI--HAEE-HTIEVKNDGKGIPIEIH 114 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEE--ETTT-TEEEEEEESSCCCCSBC
T ss_pred chHHHHHHHHHhCHHHHHHhcCCCCEEEEEE--ECCC-CEEEEEECCCcccCccc
Confidence 456667777777777544 4456888888 3342 24899999999998763
No 88
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=92.24 E-value=2.8 Score=46.77 Aligned_cols=99 Identities=12% Similarity=0.053 Sum_probs=52.8
Q ss_pred ChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCcCccCceeEEEEEeeCCCCCcceeeeec----cc-------cCCcch
Q 008642 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVG----NF-------NMPAGL 182 (558)
Q Consensus 114 S~df~~l~~~ql~~l~~~~~~~a~~~vYl~~~~~~~~~~~~L~~v~~yp~~~~~~~~~~~g----~~-------~i~~~~ 182 (558)
+.|+.++++..++.+...++.+ +.++|+.... .+ +|...+.+.........+..| .. .++...
T Consensus 26 ~ldl~~ll~~il~~l~~~l~ad-~~~i~L~d~~---~~--~l~~~~~~g~~~~~~~~~p~~Gi~g~v~~~~~pv~i~d~~ 99 (691)
T 3ibj_A 26 DLDASSLQLKVLQYLQQETRAS-RCCLLLVSED---NL--QLSCKVIGDKVLGEEVSFPLTGCLGQVVEDKKSIQLKDLT 99 (691)
T ss_dssp CSSHHHHHHHHHHHHHHHTTBS-CEEEEEECTT---SS--EEEEEEETTEEEEEEEEEECCSSSHHHHHHCCCEEGGGSC
T ss_pred hccHHHHHHHHHHHHHHHhCCC-EEEEEEEECC---CC--eEEEEecCCCccccceecCCccHHHHHHHHCCeEEeccch
Confidence 6789999999999999999555 4458887521 22 232222111000001111122 00 022211
Q ss_pred hHHHHhhhcccccccCCCceEEEeeeeC--CeEEEEEEEe
Q 008642 183 RAAEAALSSQQVQVVPEQRAVVFPMVKH--PFVVGFLVAE 220 (558)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~lvlPL~~~--~~vvGvLv~e 220 (558)
..+ .... ......+....+++||+.+ |.++|+|++.
T Consensus 100 ~~~-~~~~-~~~~~~~~~S~L~vPI~~~~~g~viGvL~l~ 137 (691)
T 3ibj_A 100 SED-VQQL-QSMLGCELQAMLCVPVISRATDQVVALACAF 137 (691)
T ss_dssp HHH-HHHH-HHHHTSCCSCEEEEEEECSSSCSEEEEEEEE
T ss_pred hcc-cccc-ccccCCccceEEEEEeEcCCCCcEEEEEEEE
Confidence 111 0000 0111233568999999998 9999999988
No 89
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=91.84 E-value=0.67 Score=51.90 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=19.7
Q ss_pred CceEEEeeeeC-CeEEEEEEEec
Q 008642 200 QRAVVFPMVKH-PFVVGFLVAEL 221 (558)
Q Consensus 200 ~~~lvlPL~~~-~~vvGvLv~e~ 221 (558)
...+++||+.+ |.++|+|.+..
T Consensus 287 rS~L~vPL~~~~g~viGVL~l~~ 309 (691)
T 3ibj_A 287 RNILCFPIKNENQEVIGVAELVN 309 (691)
T ss_dssp CCEEEEECCCSSSCCCEEEEEEE
T ss_pred eeEEEEeEECCCCCEEEEEEEEE
Confidence 47899999999 89999999983
No 90
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=90.95 E-value=0.16 Score=53.81 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCEEEEEEEEecCCeEEEEEEecCCCCCHhHH
Q 008642 489 EPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMVI 541 (558)
Q Consensus 489 ~~~L~qVL~NLI~NAlkyt~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~~ 541 (558)
-..+.+|+.|-|++|+. .....|.|.+ ..++ .|+|+|||.|||.+..
T Consensus 52 ~hlv~EivdNsiDea~a--g~~~~I~V~i--~~dg--sI~V~DnGrGIPv~~h 98 (408)
T 3lnu_A 52 NHLAQEVIDNSVDEALA--GHAKQIEVTL--YKDG--SCEVSDDGRGMPVDIH 98 (408)
T ss_dssp HHHHHHHHHHHHHHHHT--TSCCEEEEEE--CTTS--CEEEEECSSCCCCSBC
T ss_pred chhhHHHHHHHHHHhhc--CCCceEEEEE--eCCC--eEEEEEcCCCCCcccc
Confidence 45666666666666664 2345788877 4344 4999999999998763
No 91
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=90.80 E-value=4.9 Score=41.12 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=26.2
Q ss_pred ChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 008642 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (558)
Q Consensus 114 S~df~~l~~~ql~~l~~~~~~~a~~~vYl~~ 144 (558)
|.|+.++|+.-++.+++.++.| +++||==.
T Consensus 146 sldl~~il~~av~evr~llg~D-RVmIYrF~ 175 (327)
T 4e04_A 146 AETLESACAAAAQEVREITGFD-RVMIYRFA 175 (327)
T ss_dssp CCSHHHHHHHHHHHHHHHHCCS-EEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHHHCCC-eEEEEEEc
Confidence 5688999999999999999999 88888654
No 92
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=90.31 E-value=0.18 Score=50.03 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=23.1
Q ss_pred EEEEEEEecCCeEEEEEEecCCCCCHhHHHhccc
Q 008642 513 VEIVSAAAPAGDALVVIDDDGPDMHYMVIIANFA 546 (558)
Q Consensus 513 I~I~v~~~~~~~v~I~V~D~G~GI~~e~~~~IFe 546 (558)
+.|.+..+ .+.-.|.|.|||+||+.+++..-|.
T Consensus 119 l~I~I~~D-k~~~tLtI~DNGiGMTkeeL~~~Lg 151 (272)
T 3ied_A 119 LIIKIKPD-KEKKTLTITDNGIGMDKSELINNLG 151 (272)
T ss_dssp CCEEEEEE-TTTTEEEEEECSCCCCHHHHHHHTT
T ss_pred cEEEEEEe-CCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 34444334 3334699999999999999887653
No 93
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=90.22 E-value=6.2 Score=40.59 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=27.0
Q ss_pred CChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 008642 113 PSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (558)
Q Consensus 113 ~S~df~~l~~~ql~~l~~~~~~~a~~~vYl~~ 144 (558)
-|.++.++|+.-++.+++.++.| ++.+|==.
T Consensus 163 ~sldl~~ilq~tV~eVR~llg~D-RVmIYrF~ 193 (343)
T 3s7o_A 163 SAPNLRALAEVATQTVRELTGFD-RVMLYKFA 193 (343)
T ss_dssp HCCSHHHHHHHHHHHHHHHHCCS-EEEEEEEC
T ss_pred hcCCHHHHHHHHHHHHHHHhCCC-eEEEEEEc
Confidence 36789999999999999999999 88888654
No 94
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=84.35 E-value=0.94 Score=40.59 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=20.9
Q ss_pred CCCceEEEeeeeCCeEEEEEEEec
Q 008642 198 PEQRAVVFPMVKHPFVVGFLVAEL 221 (558)
Q Consensus 198 ~~~~~lvlPL~~~~~vvGvLv~e~ 221 (558)
.-...+++||+.++.++|+|.++.
T Consensus 117 ~~~s~l~vPi~~~~~l~G~l~~~~ 140 (172)
T 2k2n_A 117 GVASSLVVPLMHHQELWGLLVSHH 140 (172)
T ss_dssp TCSEEEECCCSCSSCCCEEEEEEE
T ss_pred CCeEEEEEEEEECCEEEEEEEEEe
Confidence 345789999999999999999993
No 95
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens}
Probab=81.82 E-value=28 Score=31.21 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.8
Q ss_pred CCCceEEEeeeeCCeEEEEEEEec
Q 008642 198 PEQRAVVFPMVKHPFVVGFLVAEL 221 (558)
Q Consensus 198 ~~~~~lvlPL~~~~~vvGvLv~e~ 221 (558)
..-+.+.+||..+++++|++++..
T Consensus 105 ~~~~ILgVPL~~g~qVIGVLFaAr 128 (162)
T 3eea_A 105 RNLCVLAVPMVVRTQVIGAVFMAR 128 (162)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEEE
T ss_pred hhCeEEEecceeCCEEEEEEEEec
Confidence 344689999999999999999993
No 96
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=80.38 E-value=5 Score=36.82 Aligned_cols=87 Identities=11% Similarity=0.010 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhhhhhcCCceEEEEEecCCcCccCceeEEEEEeeCCCCC-cceeeeeccccC-CcchhHHHHhhhcccc
Q 008642 117 FQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA-TDIVVLVGNFNM-PAGLRAAEAALSSQQV 194 (558)
Q Consensus 117 f~~l~~~ql~~l~~~~~~~a~~~vYl~~~~~~~~~~~~L~~v~~yp~~~~-~~~~~~~g~~~i-~~~~~~a~~~~~~~~~ 194 (558)
...+-...+....+.++.| ..++|+..+ ++ +|...+..-.... ..+.+..+.... |..+ +.
T Consensus 29 ~~~~l~~il~~a~~~~~~d-~gsL~l~d~----~~--~l~~~aa~G~~~~l~~lr~~~~~~~~gpr~~----------~~ 91 (160)
T 3cit_A 29 PEAMRKCVLQRACAFVAMD-HGLLLEWGA----DN--GVQTTARHGSKERLSTLETTADPLAIGPQWL----------ER 91 (160)
T ss_dssp HHHHHHHHHHHHHHHTTCS-EEEEEECC------C--CCEEEEEESCHHHHTTSCCCCCTTCCSCEEE----------EC
T ss_pred HHHHHHHHHHHHHHHhccC-eeEEEEEcC----CC--ceeeeeccCchhhhhhhhccccccccccccc----------cc
Confidence 3566666677888888777 667999762 23 3455555531000 111111111111 1111 00
Q ss_pred cccCCCceEEEee-eeCCeEEEEEEEe
Q 008642 195 QVVPEQRAVVFPM-VKHPFVVGFLVAE 220 (558)
Q Consensus 195 ~~~~~~~~lvlPL-~~~~~vvGvLv~e 220 (558)
--....+.+++|| ..+|.++|++.+.
T Consensus 92 tg~~t~svl~vPL~~~~g~~~Gvlql~ 118 (160)
T 3cit_A 92 PGTHLPCVLLLPLRGADEGSFGTLVLA 118 (160)
T ss_dssp TTSSSCEEEEEEEECSSSSEEEEEEEE
T ss_pred cCcccceeEEEeeecCCCcEEEEEEEe
Confidence 1112356889999 5999999999998
No 97
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=80.22 E-value=2 Score=51.30 Aligned_cols=48 Identities=13% Similarity=0.257 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhhcc---CCCCEEEEEEEEecCCeEEEEEEecCCCCCHhH
Q 008642 490 PALRQALSNLIEGALMRT---QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMV 540 (558)
Q Consensus 490 ~~L~qVL~NLI~NAlkyt---~~gg~I~I~v~~~~~~~v~I~V~D~G~GI~~e~ 540 (558)
..|..++.-+|+||++-. .....|.|.+.. .++. |+|+|||.|||-+.
T Consensus 58 ~GL~hl~~EildNsiDea~ag~~~~~I~V~i~~-~d~s--isV~DnGRGIPvd~ 108 (1177)
T 4gfh_A 58 PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHA-EEHT--IEVKNDGKGIPIEI 108 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET-TTTE--EEEEECSSCCCCSB
T ss_pred ceeeeEeeEEEEChHhHHhhCCCCCeEEEEEEC-CCCE--EEEEecCCcccccc
Confidence 355555555666665522 112468887732 2454 89999999999653
No 98
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
Probab=63.05 E-value=24 Score=35.41 Aligned_cols=89 Identities=21% Similarity=0.247 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhhhhhcCCceEEEEEecCCcCccCc-eeEEEEEeeCCCCC---cceeeeecccc-------CCcchhHH
Q 008642 117 FQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDR-LELRRVVSYPGVNA---TDIVVLVGNFN-------MPAGLRAA 185 (558)
Q Consensus 117 f~~l~~~ql~~l~~~~~~~a~~~vYl~~~~~~~~~~-~~L~~v~~yp~~~~---~~~~~~~g~~~-------i~~~~~~a 185 (558)
...+++..|++|++..... ..++|.-+ ++. ..+.|++.--.... ++. +++.+. +.....+.
T Consensus 24 l~~~a~~lL~llaq~~~l~-~Aaly~~~-----~~~~~~~~p~A~iG~~~~l~~~Dp--LVr~alet~~l~~v~~~~~~~ 95 (298)
T 4eu0_A 24 LDALAETVLALLAQYGSLR-IAGLYRVR-----YDRTPEPQPLATLGEMPALDADDL--LVRTCLERGELVSVRQELLER 95 (298)
T ss_dssp HHHTHHHHHHHHHHHHTCS-EEEEEEBC-----TTSCBCSSCSEEESSCCCCCSCCH--HHHHHHHHTSCEECCC-----
T ss_pred ChHHHHHHHHHHHHhcCee-EEEEEEEE-----CCcccCCceeeecCCCCCCCCCCH--HHHHHHHhCCceeechhhhhc
Confidence 4556888889999888666 66799865 333 55666665543211 111 111110 11110000
Q ss_pred HHhhhcccccccCCCceEEEeee-eCCeEEEEEEEe
Q 008642 186 EAALSSQQVQVVPEQRAVVFPMV-KHPFVVGFLVAE 220 (558)
Q Consensus 186 ~~~~~~~~~~~~~~~~~lvlPL~-~~~~vvGvLv~e 220 (558)
....-.....+|+||+ .+|.++|+++++
T Consensus 96 -------~~~~~~sryL~viPLld~~g~i~Gvl~V~ 124 (298)
T 4eu0_A 96 -------GEQRAHSAAAVCVPLVDTDGRILALLAVE 124 (298)
T ss_dssp ---------------CCEEEEEECTTSCEEEEEEEE
T ss_pred -------cccccccceEEEEEeecCCCcEEEEEEEe
Confidence 0000134678999999 999999999999
No 99
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=28.52 E-value=12 Score=43.06 Aligned_cols=30 Identities=0% Similarity=0.066 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 008642 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (558)
Q Consensus 114 S~df~~l~~~ql~~l~~~~~~~a~~~vYl~~ 144 (558)
+.++.++.+..++.+.+.++.+ ..+||+..
T Consensus 347 s~dl~~ll~~I~~~a~~ll~a~-~~~V~L~d 376 (878)
T 3bjc_A 347 QQSLEVILKKIAATIISFMQVQ-KCTIFIVD 376 (878)
T ss_dssp -------------------------------
T ss_pred cccHHHHHHHHHHHHHHHhCcc-eeEEEEEc
Confidence 5688888888888888888444 44499875
No 100
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=27.72 E-value=13 Score=42.86 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=0.0
Q ss_pred ccCChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 008642 111 VLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (558)
Q Consensus 111 ~~~S~df~~l~~~ql~~l~~~~~~~a~~~vYl~~ 144 (558)
+..+.|+..+++..++.+.+.++.+ ..++|+..
T Consensus 162 L~~~ldl~~ll~~il~~l~~~l~ad-~~~I~L~d 194 (878)
T 3bjc_A 162 ISSHLDVTALCHKIFLHIHGLISAD-RYSLFLVC 194 (878)
T ss_dssp ----------------------------------
T ss_pred HhhcCCHHHHHHHHHHHHHHHhCCC-eEEEEEEe
Confidence 3446788999999999999999544 44488875
No 101
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=26.79 E-value=49 Score=28.35 Aligned_cols=22 Identities=23% Similarity=0.135 Sum_probs=19.7
Q ss_pred CCceEEEeeeeCCeEEEEEEEe
Q 008642 199 EQRAVVFPMVKHPFVVGFLVAE 220 (558)
Q Consensus 199 ~~~~lvlPL~~~~~vvGvLv~e 220 (558)
-...+++||+.+|.++|.+.+-
T Consensus 75 ~~s~ii~PI~~~g~viG~i~l~ 96 (123)
T 2w1r_A 75 MNSYTVGPIVANGDPIGAVVIF 96 (123)
T ss_dssp ESEEEEEEEEETTEEEEEEEEE
T ss_pred eeEEEEEEEEECCEEEEEEEEE
Confidence 3568999999999999999877
Done!