BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008643
(558 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain
Length = 310
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%)
Query: 247 FLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVV 306
F T + +AL L G+ H D P NI D I DFG LS ++KQ +A V
Sbjct: 134 FYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANAFV 193
>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7
Length = 311
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%)
Query: 247 FLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVV 306
F T + +AL L G+ H D P NI D I DFG LS ++KQ ++ V
Sbjct: 133 FYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFV 192
>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human
Pdk1 Complex 2
Length = 311
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%)
Query: 247 FLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVV 306
F T + +AL L G+ H D P NI D I DFG LS ++KQ ++ V
Sbjct: 136 FYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFV 195
>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent
Kinase- 1 (Pdk-1)catalytic Domain Bound To A
Dibenzonaphthyridine Inhibitor
pdb|3ION|A Chain A, Pdk1 In Complex With Compound 8h
Length = 312
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%)
Query: 247 FLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVV 306
F T + +AL L G+ H D P NI D I DFG LS ++KQ ++ V
Sbjct: 137 FYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFV 196
>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-3
Length = 286
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%)
Query: 247 FLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVV 306
F T + +AL L G+ H D P NI D I DFG LS ++KQ + V
Sbjct: 113 FYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV 172
>pdb|1Z5M|A Chain A, Crystal Structure Of
N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl)
Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2-
Dimethylpropanediamide Complexed With Human Pdk1
pdb|2PE0|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
5-Hydroxy-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-1,
3-Dihydro- Indol-2-One Complex
pdb|2PE1|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
{2-Oxo-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-2,
3-Dihydro-1h- Indol-5-Yl}-Urea {bx-517} Complex
pdb|2PE2|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
3-{5-[2-Oxo-5-Ureido-1,
2-Dihydro-Indol-(3z)-Ylidenemethyl]-1h-
Pyrrol-3-Yl}-N-(2-Piperidin-1-Yl-Ethyl)-Benzamide
Complex
Length = 286
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 247 FLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQ 299
F T + +AL L G+ H D P NI D I DFG LS ++KQ
Sbjct: 111 FYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ 163
>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1
Catalytic Domain
pdb|1UVR|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-8
Length = 289
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%)
Query: 247 FLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVV 306
F T + +AL L G+ H D P NI D I DFG LS ++KQ + V
Sbjct: 114 FYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV 173
>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8
pdb|3NUU|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment11
pdb|3NUY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment17
Length = 286
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 247 FLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQ 299
F T + +AL L G+ H D P NI D I DFG LS ++KQ
Sbjct: 112 FYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ 164
>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead
Compound
Length = 292
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 247 FLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQ 299
F T + +AL L G+ H D P NI D I DFG LS ++KQ
Sbjct: 118 FYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ 170
>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6
pdb|3NAY|B Chain B, Pdk1 In Complex With Inhibitor Mp6
Length = 311
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 247 FLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQ 299
F T + +AL L G+ H D P NI D I DFG LS ++KQ
Sbjct: 133 FYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ 185
>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%)
Query: 247 FLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVV 306
F T + +AL L G+ H D P NI D I DFG LS ++KQ + V
Sbjct: 134 FYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV 193
>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 247 FLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQ 299
F T + +AL L G+ H D P NI D I DFG LS ++KQ
Sbjct: 136 FYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ 188
>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ly333531
pdb|1UU7|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-2
pdb|1UU8|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-1
pdb|1OKY|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Staurosporine
pdb|1OKZ|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ucn-01
Length = 310
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 247 FLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQ 299
F T + +AL L G+ H D P NI D I DFG LS ++KQ
Sbjct: 134 FYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ 186
>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through
Fragment-Based Lead Discovery
pdb|3RWQ|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%)
Query: 247 FLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVV 306
F T + +AL L G+ H D P NI D I DFG LS ++KQ + V
Sbjct: 136 FYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV 195
>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|E Chain E, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|F Chain F, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|G Chain G, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|H Chain H, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORZ|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3OTU|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator Js30
Length = 316
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%)
Query: 247 FLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVV 306
F T + +AL L G+ H D P NI D I DFG LS ++KQ + V
Sbjct: 141 FYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV 200
>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 247 FLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQ 299
F T + +AL L G+ H D P NI D I DFG LS ++KQ
Sbjct: 134 FYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ 186
>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i
pdb|3QCQ|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-(3-
Amino-1h-Indazol-6-Yl)-N4-Ethyl-2,4-Pyrimidinediamine
pdb|3QCS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-[2-
Amino-6-(4-Morpholinyl)-4-Pyrimidinyl]-1h-Indazol-3-
Amine
pdb|3QCX|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-{2-
Amino-6-[(3r)-3-Methyl-4-Morpholinyl]-4-Pyrimidinyl}-1h-
Indazol-3- Amine
pdb|3QCY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 4-[2-
Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-N-
Phenyl-2- Morpholinecarboxamide
pdb|3QD0|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With (2r,5s)-
1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-6-
Methyl-N- Phenyl-3-Piperidinecarboxamide
pdb|3QD3|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1- Dimethylethyl
{(3r,6s)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-6-Methyl-3-Piperidinyl}carbamate
pdb|3QD4|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1-
Dimethylethyl{(3r,
5r)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-5-Methyl-3-Piperidinyl}carbamate
Length = 312
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%)
Query: 247 FLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVV 306
F T + +AL L G+ H D P NI D I DFG LS ++KQ + V
Sbjct: 137 FYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV 196
>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In
Complex With Compound 9
Length = 311
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%)
Query: 247 FLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVV 306
F T + +AL L G+ H D P NI D I DFG LS ++KQ + V
Sbjct: 136 FYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV 195
>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain
In Complex With Atp
pdb|3HRF|A Chain A, Crystal Structure Of Human Pdk1 Kinase Domain In Complex
With An Allosteric Activator Bound To The Pif-Pocket
pdb|3RCJ|A Chain A, Rapid Preparation Of Triazolyl Substituted Nh-Heterocyclic
Kinase Inhibitors Via One-Pot Sonogashira Coupling
Tms-Deprotection Cuaac Sequence
pdb|4A06|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps114 Bound To The Pif-Pocket
pdb|4AW1|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps210 Bound To The Pif-Pocket
Length = 311
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%)
Query: 247 FLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVV 306
F T + +AL L G+ H D P NI D I DFG LS ++KQ + V
Sbjct: 136 FYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV 195
>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps171 Bound To The Pif-Pocket
pdb|4AW0|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps182 Bound To The Pif-Pocket
Length = 311
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%)
Query: 247 FLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVV 306
F T + +AL L G+ H D P NI D I DFG LS ++KQ + V
Sbjct: 136 FYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV 195
>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
pdb|3QC4|B Chain B, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
Length = 314
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%)
Query: 247 FLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVV 306
F T + +AL L G+ H D P NI D I DFG LS ++KQ + V
Sbjct: 139 FYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV 198
>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.28 A Resolution
pdb|4G34|A Chain A, Crystal Structure Of Gsk6924 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.70 A Resolution
Length = 299
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 224 EWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIA 283
+W++G RCT + + + + FL + + A+ L GL H D P NIF D +
Sbjct: 104 DWMNG-RCTIEERERSVCLHI--FLQI--AEAVEFLHSKGLMHRDLKPSNIFFTMDDVVK 158
Query: 284 YVDFGNVAELSQQNKQ 299
DFG V + Q ++
Sbjct: 159 VGDFGLVTAMDQDEEE 174
>pdb|2ZMD|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain T686a
Mutant In Complex With Sp600125 Inhibitor
Length = 390
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 255 ALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVVHAVN 310
A+ + + G+ H D P N F + DG + +DFG ++ ++ D+ V AVN
Sbjct: 167 AVHTIHQHGIVHSDLKPAN-FLIVDGMLKLIDFGIANQMQPDTTSVVKDSQVGAVN 221
>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In
Complex With A Consensus Peptide
Length = 301
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 221 LVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDG 280
+VME+++G TD + + + V AL L G+ H D +I DG
Sbjct: 103 VVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDG 162
Query: 281 RIAYVDFGNVAELSQQ 296
R+ DFG A++S++
Sbjct: 163 RVKLSDFGFCAQVSKE 178
>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
pdb|2BVA|B Chain B, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 292
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 221 LVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDG 280
+VME+++G TD + + + V AL L G+ H D +I DG
Sbjct: 94 VVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDG 153
Query: 281 RIAYVDFGNVAELSQQ 296
R+ DFG A++S++
Sbjct: 154 RVKLSDFGFCAQVSKE 169
>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5
pdb|2F57|B Chain B, Crystal Structure Of The Human P21-activated Kinase 5
Length = 317
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%)
Query: 221 LVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDG 280
+VME+++G TD + + + V AL L G+ H D +I DG
Sbjct: 119 VVMEFLEGGALTDIVTHTRMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSILLTSDG 178
Query: 281 RIAYVDFGNVAELSQQ 296
RI DFG A++S++
Sbjct: 179 RIKLSDFGFCAQVSKE 194
>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Cgp74514a
pdb|2J0I|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 303
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 221 LVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDG 280
+VME+++G TD + + + V AL L G+ H D +I DG
Sbjct: 105 VVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDG 164
Query: 281 RIAYVDFGNVAELSQQ 296
R+ DFG A++S++
Sbjct: 165 RVKLSDFGFCAQVSKE 180
>pdb|2X9E|A Chain A, Human Mps1 In Complex With Nms-P715
Length = 317
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 255 ALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYA 314
A+ + + G+ H D P N F + DG + +DFG ++ ++ D+ V VN
Sbjct: 123 AVHTIHQHGIVHSDLKPAN-FLIVDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPP 181
Query: 315 EMANDFT 321
E D +
Sbjct: 182 EAIKDMS 188
>pdb|3VQU|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With 4- [(4-Amino-5-Cyano-6-Ethoxypyridin-2-
Yl)amino]benzamide
Length = 320
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 255 ALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYA 314
A+ + + G+ H D P N F + DG + +DFG ++ ++ D+ V VN
Sbjct: 119 AVHTIHQHGIVHSDLKPAN-FLIVDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPP 177
Query: 315 EMANDFT 321
E D +
Sbjct: 178 EAIKDMS 184
>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Pf-03758309
pdb|4APP|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With (S)-N-(5-(3-Benzyl-1-Methylpiperazine-4-
Carbonyl)-6,6-Dimethyl-1,4,5,6-Tetrahydropyrrolo(3,4-C)
Pyrazol-3-Yl)-3-Phenoxybenzamide
Length = 296
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 221 LVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDG 280
+VME+++G TD + + + V AL L G+ H D +I DG
Sbjct: 98 VVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDG 157
Query: 281 RIAYVDFGNVAELSQQ 296
R+ DFG A++S++
Sbjct: 158 RVKLSDFGFCAQVSKE 173
>pdb|3CEK|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(ttk)
pdb|3GFW|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(Ttk) In Complex With A Pyrolo-Pyridin Ligand
Length = 313
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 255 ALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYA 314
A+ + + G+ H D P N F + DG + +DFG ++ ++ D+ V VN
Sbjct: 139 AVHTIHQHGIVHSDLKPAN-FLIVDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPP 197
Query: 315 EMANDFT 321
E D +
Sbjct: 198 EAIKDMS 204
>pdb|3HMN|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With Atp
pdb|3HMO|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With The Inhibitor Staurosporine
pdb|3HMP|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With A Quinazolin Ligand Compound 4
Length = 342
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 255 ALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVVHAVN 310
A+ + + G+ H D P N F + DG + +DFG ++ ++ D+ V VN
Sbjct: 167 AVHTIHQHGIVHSDLKPAN-FLIVDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVN 221
>pdb|3DBQ|A Chain A, Crystal Structure Of Ttk Kinase Domain
Length = 343
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 255 ALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVVHAVN 310
A+ + + G+ H D P N F + DG + +DFG ++ ++ D+ V VN
Sbjct: 120 AVHTIHQHGIVHSDLKPAN-FLIVDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVN 174
>pdb|2ZMC|A Chain A, Crystal Structure Of Human Mitotic Checkpoint Kinase Mps1
Catalytic Domain Apo Form
Length = 390
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 255 ALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVVHAVN 310
A+ + + G+ H D P N F + DG + +DFG ++ ++ D+ V VN
Sbjct: 167 AVHTIHQHGIVHSDLKPAN-FLIVDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVN 221
>pdb|4FIE|A Chain A, Full-Length Human Pak4
pdb|4FIE|B Chain B, Full-Length Human Pak4
Length = 423
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 221 LVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDG 280
+VME+++G TD + + + V AL L G+ H D +I DG
Sbjct: 225 VVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDG 284
Query: 281 RIAYVDFGNVAELSQQ 296
R+ DFG A++S++
Sbjct: 285 RVKLSDFGFCAQVSKE 300
>pdb|3H9F|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(Ttk) In Complex With A Pyrimido-Diazepin Ligand
Length = 313
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 255 ALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYA 314
A+ + + G+ H D P N F + DG + +DFG ++ ++ D+ V VN
Sbjct: 139 AVHTIHQHGIVHSDLKPAN-FLIVDGMLKLIDFGIANQMQPDXXXVVKDSQVGTVNYMPP 197
Query: 315 EMANDFT 321
E D +
Sbjct: 198 EAIKDMS 204
>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIF|B Chain B, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIG|A Chain A, Catalytic Domain Of Human Pak4
pdb|4FIG|B Chain B, Catalytic Domain Of Human Pak4
pdb|4FIH|A Chain A, Catalytic Domain Of Human Pak4 With Qkftglprqw Peptide
pdb|4FII|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIJ|A Chain A, Catalytic Domain Of Human Pak4
Length = 346
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 221 LVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDG 280
+VME+++G TD + + + V AL L G+ H D +I DG
Sbjct: 148 VVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDG 207
Query: 281 RIAYVDFGNVAELSQQ 296
R+ DFG A++S++
Sbjct: 208 RVKLSDFGFCAQVSKE 223
>pdb|3V8S|A Chain A, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|B Chain B, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|C Chain C, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|D Chain D, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3TV7|A Chain A, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|B Chain B, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|C Chain C, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|D Chain D, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TWJ|A Chain A, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|B Chain B, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|C Chain C, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|D Chain D, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
Length = 410
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 32/76 (42%)
Query: 221 LVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDG 280
+VME++ G + + F T V AL + G H D P N+ + G
Sbjct: 146 MVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSG 205
Query: 281 RIAYVDFGNVAELSQQ 296
+ DFG +++++
Sbjct: 206 HLKLADFGTCMKMNKE 221
>pdb|2ESM|A Chain A, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ESM|B Chain B, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ETK|A Chain A, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETK|B Chain B, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETR|A Chain A, Crystal Structure Of Rock I Bound To Y-27632
pdb|2ETR|B Chain B, Crystal Structure Of Rock I Bound To Y-27632
pdb|3D9V|A Chain A, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3D9V|B Chain B, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3NCZ|A Chain A, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|B Chain B, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|C Chain C, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|D Chain D, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NDM|A Chain A, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|B Chain B, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|C Chain C, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|D Chain D, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
Length = 415
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 32/76 (42%)
Query: 221 LVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDG 280
+VME++ G + + F T V AL + G H D P N+ + G
Sbjct: 151 MVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSG 210
Query: 281 RIAYVDFGNVAELSQQ 296
+ DFG +++++
Sbjct: 211 HLKLADFGTCMKMNKE 226
>pdb|2V55|A Chain A, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|C Chain C, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 406
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 32/76 (42%)
Query: 221 LVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDG 280
+VME++ G + + F T V AL + G H D P N+ + G
Sbjct: 151 MVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSG 210
Query: 281 RIAYVDFGNVAELSQQ 296
+ DFG +++++
Sbjct: 211 HLKLADFGTCMKMNKE 226
>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|E Chain E, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|C Chain C, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|B Chain B, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
Length = 402
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 85/220 (38%), Gaps = 39/220 (17%)
Query: 207 KIPRVYKRLSGSRVLVMEWIDGIRCTDPQ--AIKGAGIDVGGFLTVGVSAALRQLLE--- 261
K+ R+ +R++G + + D ++ PQ AI A V S L+Q+LE
Sbjct: 167 KVERLTQRMAGM-AFLGNFQDNLQMLTPQLNAIIAASASVKS------SQKLKQMLEIIL 219
Query: 262 -FGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDF 320
G + G ++ + + + + S K L+ + V E Y E+AN +
Sbjct: 220 ALGNYMNSSKRGAVYGFKLQSLDLL----LDTKSTDRKMTLLHFIALTVKEKYPELANFW 275
Query: 321 TRLGFLAKGTDVSPIIPALEAIWQNSS--GKGLADFNFRSVTGQFNKLVYNYRIRIPERF 378
L F+ K VS LE + + G+G+ + R + N ++ N+
Sbjct: 276 QELHFVEKAAAVS-----LENVLLDVKELGRGM-ELIRRECSIHDNSVLRNF-------- 321
Query: 379 SLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPN 418
L T EG L+ D K E AY V + P
Sbjct: 322 ------LSTNEGKLDKLQRDAKTAEEAYNAVVRYFGESPK 355
>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2F2U|B Chain B, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2H9V|A Chain A, Structural Basis For Induced-Fit Binding Of Rho-Kinase To
The Inhibitor Y27632
Length = 402
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 247 FLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQ 295
F T V AL + GL H D P N+ + G + DFG ++ +
Sbjct: 178 FYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDE 226
>pdb|2A0A|A Chain A, Solution Structure Of Der F 13, Group 13 Allergen From
House Dust Mites
Length = 131
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 131 AIKVQRPGIEPIIYRDLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLE--ELDYTL 188
A K +P E I D ++FR+L++F N + KLG +EF E + + +
Sbjct: 32 AAKTLKPTFEVAIENDQYIFRSLSTFKNTEAKFKLG-------EEFEEDRADGKRVKTVI 84
Query: 189 EARNMEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGI 229
+ F++ D VKI R + +G V+V DG+
Sbjct: 85 QKEGDNKFVQTQFGDKEVKIIREF---NGDEVVVTASCDGV 122
>pdb|3ALN|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALN|B Chain B, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALN|C Chain C, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALO|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Ternary Complex With Amp-Pnp And P38 Peptide
pdb|3VUT|A Chain A, Crystal Structures Of Non-Phosphorylated Map2k4
pdb|3VUT|B Chain B, Crystal Structures Of Non-Phosphorylated Map2k4
Length = 327
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 243 DVGGFLTVGVSAALRQLLE-FGLFHGDPHPGNIFAMRDGRIAYVDFGNVAEL 293
++ G +T+ AL L E + H D P NI R G I DFG +L
Sbjct: 125 EILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQL 176
>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain
Length = 332
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 250 VGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQ 299
+ ++ A+ L GL H D P NIF D + DFG V + Q ++
Sbjct: 171 IQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEE 220
>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 7 Activated Mutant (S287d, T291d)
Length = 318
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 246 GFLTVGVSAALRQLLE-FGLFHGDPHPGNIFAMRDGRIAYVDFG 288
G +TV + AL L E G+ H D P NI G+I DFG
Sbjct: 127 GKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFG 170
>pdb|3P1A|A Chain A, Structure Of Human Membrane-Associated Tyrosine- And
Threonine- Specific Cdc2-Inhibitory Kinase Myt1 (Pkmyt1)
Length = 311
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 19/40 (47%)
Query: 255 ALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELS 294
AL L GL H D P NIF GR DFG + EL
Sbjct: 169 ALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELG 208
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 91 EEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIK 133
E+ L + E VF + + + S G VY+A +ETG+ VAIK
Sbjct: 20 EDSLTKQPEEVFDVL--EKLGEGSYGSVYKAIHKETGQIVAIK 60
>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A60|B Chain B, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A61|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form Ii)
Length = 327
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 8/110 (7%)
Query: 187 TLEARNMEDFLENFKDDPTVKIPRVYKRLSGSRV-LVMEWIDGIRCTDPQAIKGAGI--- 242
T + + LE K V + +Y +G ++ L++E++ G ++ GI
Sbjct: 65 TAHTKAERNILEEVKHPFIVDL--IYAFQTGGKLYLILEYLSGGELF--MQLEREGIFME 120
Query: 243 DVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAE 292
D F +S AL L + G+ + D P NI G + DFG E
Sbjct: 121 DTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKE 170
>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1
Length = 327
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 8/110 (7%)
Query: 187 TLEARNMEDFLENFKDDPTVKIPRVYKRLSGSRV-LVMEWIDGIRCTDPQAIKGAGI--- 242
T + + LE K V + +Y +G ++ L++E++ G ++ GI
Sbjct: 65 TAHTKAERNILEEVKHPFIVDL--IYAFQTGGKLYLILEYLSGGELF--MQLEREGIFME 120
Query: 243 DVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAE 292
D F +S AL L + G+ + D P NI G + DFG E
Sbjct: 121 DTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKE 170
>pdb|1OBF|O Chain O, The Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
Resolution.
pdb|1OBF|P Chain P, The Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
Resolution
Length = 335
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 83 NQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQV 118
NQV ++ E+L R A S I ++T AAA++G V
Sbjct: 186 NQVLTDVYHEDLRRARSATMSMIPTKTGAAAAVGDV 221
>pdb|3J15|A Chain A, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 357
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 395 LKPDF-KFLEVAYPYVAKR-LLTDPNPALRERLIQVLFK---DNVFQWKRLENLITLAK- 448
+K DF KFL+ YP +AK+ ++ D + R + +V+ + D V+Q R+ + L +
Sbjct: 210 VKEDFYKFLKEKYPELAKKVVIEDTSVTGRTGIYEVIKRGVVDRVYQENRVAKEVQLVEK 269
Query: 449 --ENVARMSSNPALRVKDMQN 467
EN+AR + A +K+++
Sbjct: 270 VLENIARNNGLVAYGLKEVEE 290
>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma
pdb|1CM8|B Chain B, Phosphorylated Map Kinase P38-Gamma
Length = 367
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 241 GIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFG 288
G D FL + LR + G+ H D PGN+ D + +DFG
Sbjct: 126 GEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFG 173
>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
pdb|3F69|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
Length = 311
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 221 LVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEF----GLFHGDPHPGNIFA 276
+VME++DG+ D +G + + V A Q L F G+ H D P NI
Sbjct: 93 IVMEYVDGVTLRDIVHTEGP---MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANILI 149
Query: 277 MRDGRIAYVDFGNVAELSQQNKQILIDAVV 306
+ VDFG ++ + A V
Sbjct: 150 SATNAVKVVDFGIARAIADSGNSVXQTAAV 179
>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6
Length = 321
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 221 LVMEWIDGIRCTDPQAIKGAGIDVGGFLTV--GVSAALRQLLEFGLFHGDPHPGNIFAMR 278
++ME++ G TD + ++ TV V AL L G+ H D +I
Sbjct: 119 VLMEFLQGGALTD--IVSQVRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTL 176
Query: 279 DGRIAYVDFGNVAELSQ 295
DGR+ DFG A++S+
Sbjct: 177 DGRVKLSDFGFCAQISK 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,461,274
Number of Sequences: 62578
Number of extensions: 694563
Number of successful extensions: 2271
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2221
Number of HSP's gapped (non-prelim): 73
length of query: 558
length of database: 14,973,337
effective HSP length: 104
effective length of query: 454
effective length of database: 8,465,225
effective search space: 3843212150
effective search space used: 3843212150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)