BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008643
(558 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8RWG1|Y4139_ARATH Uncharacterized aarF domain-containing protein kinase At4g31390,
chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1
SV=1
Length = 682
Score = 1004 bits (2595), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/558 (87%), Positives = 520/558 (93%), Gaps = 8/558 (1%)
Query: 1 MSRGVEIVWSLGLYWSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRP 60
+SRGVEIVW+LGLYWS LTYD LVGRD+EVVP RARQLRNLLCNLGPSFIKAGQVLANRP
Sbjct: 133 VSRGVEIVWTLGLYWSTLTYDFLVGRDEEVVPFRARQLRNLLCNLGPSFIKAGQVLANRP 192
Query: 61 DIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYR 120
DI+REDYMNELCILQDDVP FPN+VAFNIIEEELG+PLE +FSKISSQTIAAASLGQVYR
Sbjct: 193 DIIREDYMNELCILQDDVPPFPNEVAFNIIEEELGQPLENIFSKISSQTIAAASLGQVYR 252
Query: 121 ATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKL 180
ATLR TGEDVAIKVQRP IEPIIYRDLFLFRTLASFLNG S+QKLGCNAELIVDEFGEKL
Sbjct: 253 ATLRATGEDVAIKVQRPQIEPIIYRDLFLFRTLASFLNGFSLQKLGCNAELIVDEFGEKL 312
Query: 181 LEELDYTLEARNMEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGA 240
LEELDYTLEARN+EDFLENFKDDPTVKIP VYK L G RVLVMEWIDGIRCTDPQAIK A
Sbjct: 313 LEELDYTLEARNIEDFLENFKDDPTVKIPGVYKNLCGPRVLVMEWIDGIRCTDPQAIKDA 372
Query: 241 GIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQI 300
GID+ GFLTVGVSAALRQLLEFGLFHGDPHPGNIFAM+DGRIAYVDFGNVA LSQQNKQI
Sbjct: 373 GIDLNGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMQDGRIAYVDFGNVAVLSQQNKQI 432
Query: 301 LIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVT 360
LIDAVVHAVNEDY EMANDFTRLGFLAK TDVSPI+PALEAIWQNS+GKGLADFNFRSVT
Sbjct: 433 LIDAVVHAVNEDYGEMANDFTRLGFLAKDTDVSPIVPALEAIWQNSAGKGLADFNFRSVT 492
Query: 361 GQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPA 420
GQFNKLVY++ IRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPA
Sbjct: 493 GQFNKLVYDFPIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPA 552
Query: 421 LRERLIQVLFKDNVFQWKRLENLITLAKENVARMSSNPALRVKDMQNLKSLQVPKKLDLT 480
LRERLIQVLFKD VFQWKRLENL++LAKENVA+MSSNP LRVK +V KLDLT
Sbjct: 553 LRERLIQVLFKDGVFQWKRLENLLSLAKENVAKMSSNPNLRVK--------RVESKLDLT 604
Query: 481 DTIKDGARLFFTDEGIRRQLLLALTEDSKLHIQELVDVYRLVESDIDMPSLATEVVRDFP 540
DTIKDGARLF DEGIRR+L+LALTEDSKLH++ELVDVYRLVE ++D+P+LA +VV+D P
Sbjct: 605 DTIKDGARLFLLDEGIRRKLILALTEDSKLHVEELVDVYRLVEDEVDIPTLAMQVVQDLP 664
Query: 541 NVVRDLALSWSDSVLSDR 558
NV RD LSWS+SVLSDR
Sbjct: 665 NVFRDFVLSWSNSVLSDR 682
>sp|P73121|Y1919_SYNY3 Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1919 PE=3 SV=1
Length = 566
Score = 494 bits (1271), Expect = e-139, Method: Compositional matrix adjust.
Identities = 250/560 (44%), Positives = 358/560 (63%), Gaps = 31/560 (5%)
Query: 1 MSRGVEIVWSLGLYWSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRP 60
+ R +E+VWS G + + L +D G+ + RA LR LL LGP+FIK GQ L+ RP
Sbjct: 36 LWRALEVVWSFGFFLTCLLWDQWTGQVEYYKRQRAEDLRELLTKLGPTFIKVGQALSTRP 95
Query: 61 DIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYR 120
D+VR D++ EL LQD +P F N +AF ++EE+LG ++ + +IS+ +AAASLGQVYR
Sbjct: 96 DLVRRDFLEELIKLQDQLPPFDNDLAFQLMEEQLGMKVDEAYREISAHPVAAASLGQVYR 155
Query: 121 ATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKL 180
A L +GE+VA+KVQRP + P + DL+L R A LG + LIVDEFG KL
Sbjct: 156 AMLF-SGEEVAVKVQRPNLRPRLSLDLYLMRLGAQKFGRFLPLNLGHDLTLIVDEFGIKL 214
Query: 181 LEELDYTLEARNMEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGA 240
EE+DY E RN E F ENF D VK+P +Y + S +VL +EWI G + TD I+ A
Sbjct: 215 FEEIDYLNEGRNAEKFAENFHGDAEVKVPCIYWQYSNQKVLTLEWIQGFKLTDTDKIRAA 274
Query: 241 GIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQI 300
G+D + +GV++ LRQLLE G FH DPHPGN+FA DGR+AY+DFG + +L K+
Sbjct: 275 GLDPSDIIRIGVTSGLRQLLEHGFFHADPHPGNLFATLDGRMAYIDFGMMDQLEPGTKET 334
Query: 301 LIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVT 360
+ ++V +N+DY + DF LGFLA TD++PIIPALE ++ ++ G+ + DFNF+++T
Sbjct: 335 IASSIVQLINKDYLALTEDFIALGFLAPNTDITPIIPALENVFGSAIGQSVQDFNFKTIT 394
Query: 361 GQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPA 420
F++L+Y+Y R+P +F+L+IRSL+TQEG+ +L P+FK +EVAYPYVA+RLLT +P
Sbjct: 395 DDFSELMYDYPFRVPAKFALIIRSLVTQEGLALSLDPNFKIVEVAYPYVARRLLTGESPQ 454
Query: 421 LRERLIQVLFKDNVFQWKRLENLITLAKENVARMSSNPALRVKDMQNLKSLQVPKKLDLT 480
LR +LI VLFK+ FQW+RLEN++++A+ + K DL
Sbjct: 455 LRRQLIDVLFKNGKFQWQRLENMLSIARSDT------------------------KFDLL 490
Query: 481 DTIKDGARLFFTDEG--IRRQLLLALTEDSKLHIQELVDVYRLVESDIDMPSLATEVVRD 538
T + G + F++EG +RRQ+LLALTED +LH E+ ++ LV+ D E+V
Sbjct: 491 PTAQLGLQFLFSEEGLYLRRQILLALTEDDRLHTDEVQRIWGLVKDDFK----PQELVNV 546
Query: 539 FPNVVRDLALSWSDSVLSDR 558
N VR+ +L+ ++L R
Sbjct: 547 AWNAVREFSLAGVSTILPQR 566
>sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0005 PE=3 SV=1
Length = 681
Score = 414 bits (1065), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/440 (46%), Positives = 294/440 (66%), Gaps = 7/440 (1%)
Query: 11 LGLYWSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNE 70
LG++W L G+D V +A QLR LL NLGP++IK GQ L+ RPD+V +++E
Sbjct: 85 LGIWWEKLR-----GKDPTVSRAKAIQLRELLTNLGPTYIKVGQALSTRPDLVPPVFLDE 139
Query: 71 LCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDV 130
L LQD +PSFPN+VA+ IEEELG P E +++++S + IAAASLGQVY+ L+ TGE V
Sbjct: 140 LTTLQDQLPSFPNEVAYRFIEEELGAPAEEIYAELSPEPIAAASLGQVYKGKLK-TGEAV 198
Query: 131 AIKVQRPGIEPIIYRDLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEA 190
A+KVQRP + I D+++ R+L S S+++L + I DE ++ EE++Y EA
Sbjct: 199 AVKVQRPDLVRRITLDIYIMRSL-SLWARRSVKRLRSDLVAITDELASRVFEEMNYYQEA 257
Query: 191 RNMEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTV 250
N E F + + P + +P +Y + +G RVL MEW++GI+ T+ +AI+ GID + V
Sbjct: 258 INGEKFAQLYGSLPEIYVPSIYWQYTGRRVLTMEWVEGIKLTNIKAIQAQGIDATHLVEV 317
Query: 251 GVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVVHAVN 310
GV +LRQLLE G FH DPHPGN+ AM DGR+AY+DFG ++ + + LI+AVVH VN
Sbjct: 318 GVQCSLRQLLEHGFFHADPHPGNLLAMADGRLAYLDFGMMSTIQPYQRYGLIEAVVHLVN 377
Query: 311 EDYAEMANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNY 370
D+ +A D+ +L FL TD+ PIIPAL ++ N+ G +A+ NF+S+T Q + ++Y +
Sbjct: 378 RDFDSLAKDYVKLDFLKPDTDLKPIIPALGQVFGNALGASVAELNFKSITDQMSAMMYEF 437
Query: 371 RIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQVLF 430
R+P ++L+IRS++T EGI + P+FK L AYPY+AKRLLTD + LR L ++LF
Sbjct: 438 PFRVPAYYALIIRSMVTLEGIAIGIDPNFKVLSKAYPYIAKRLLTDQSEELRTSLKELLF 497
Query: 431 KDNVFQWKRLENLITLAKEN 450
K+ F+W RLENL+ AK +
Sbjct: 498 KEGSFRWNRLENLLRNAKNS 517
>sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600,
chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1
SV=1
Length = 711
Score = 376 bits (965), Expect = e-103, Method: Compositional matrix adjust.
Identities = 198/504 (39%), Positives = 297/504 (58%), Gaps = 14/504 (2%)
Query: 1 MSRGVEIVWSLGLYWSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRP 60
+ R +EI+ +LG + L D G ++ + RA +LR + LGP+F+K GQ L+ RP
Sbjct: 113 LRRSLEILGALGGFALKLGIDQKQGNLEKNMKKRAIELRRIFTRLGPTFVKLGQGLSTRP 172
Query: 61 DIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYR 120
D+ DY+ EL LQD +P+FP+ AF IE EL LE +FS +S + IAAASLGQVY+
Sbjct: 173 DLCPPDYLEELAELQDALPTFPDAEAFACIERELDLSLETIFSSVSPEPIAAASLGQVYK 232
Query: 121 ATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKL 180
A LR +G+ VA+KVQRPGIE I D +L R + +N + + + ++DEF ++
Sbjct: 233 AQLRYSGQVVAVKVQRPGIEEAIGLDFYLIRGVGKLINKY-VDFITTDVLTLIDEFACRV 291
Query: 181 LEELDYTLEARNMEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGA 240
+EL+Y EA+N F + + D V +P ++ + +VL MEW++G + + AI+
Sbjct: 292 YQELNYVQEAQNARRFKKLYADKADVLVPDIFWDYTSRKVLTMEWVEGTKLNEQLAIESQ 351
Query: 241 GIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQI 300
G+ V + G+ +LRQLLE+G FH DPHPGN+ A DG++A++DFG ++E ++ +
Sbjct: 352 GLKVLDLVNTGIQCSLRQLLEYGFFHADPHPGNLLATPDGKLAFLDFGMMSETPEEARFA 411
Query: 301 LIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVT 360
+I VVH VN DY MA D+ L FL+ DV+PIIPAL + ++ +++ NF+++
Sbjct: 412 IIGHVVHLVNRDYEAMARDYYALKFLSPDVDVTPIIPALRDFFDDALNYTVSELNFKTLV 471
Query: 361 GQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPA 420
+ Y Y +P ++L++RSL EG+ P+FK L +YPY AKRLLTDPNP
Sbjct: 472 DGLGAVFYQYPFNVPPYYALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNPY 531
Query: 421 LRERLIQVLFKDNVFQWKRLENLITLAKENVARMSSNPALRVKDMQNLKSLQVPKKLDLT 480
LR+ LI++LFKD F+W RLENL+ ++ +D +LQ KL L
Sbjct: 532 LRDALIELLFKDGKFRWNRLENLLQQGSKD------------RDFSAKDALQPVLKL-LL 578
Query: 481 DTIKDGARLFFTDEGIRRQLLLAL 504
D + RL E +R +AL
Sbjct: 579 DPNGEELRLLVIKEAVRVSEAIAL 602
>sp|Q94BU1|Y1181_ARATH Uncharacterized aarF domain-containing protein kinase At1g71810,
chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1
SV=1
Length = 692
Score = 330 bits (846), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 169/457 (36%), Positives = 272/457 (59%), Gaps = 19/457 (4%)
Query: 14 YWSNLTY-DCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELC 72
YW L D + R ++ RA +LR LL LGP+++K Q +++RPD++ Y++EL
Sbjct: 98 YWFGLRLADEALERSDQMFKVRAAELRKLLVELGPAYVKIAQAVSSRPDLIPPIYLDELS 157
Query: 73 ILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAI 132
+LQD + F +VAFN+IE+ELG P++ +FS+IS + +AAASLGQVY+A LR +G+ VA+
Sbjct: 158 LLQDQITPFSTEVAFNMIEDELGLPIDELFSEISPEPVAAASLGQVYQARLRRSGKVVAV 217
Query: 133 KVQRPGIEPIIYRDLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARN 192
KVQRPG+ I D + R +A + + + E +VDE+ L +E+DY EA+N
Sbjct: 218 KVQRPGVRAAIALDTLILRYIAGLIKKAG--RFNSDLEAVVDEWATSLFKEMDYLNEAQN 275
Query: 193 MEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGV 252
F + + V +P++Y S S+VLVMEW++G + + + + VGV
Sbjct: 276 GIKFRKLYGGIKDVLVPKMYTEYSTSKVLVMEWVEGQKLNEVNDLY--------LVEVGV 327
Query: 253 SAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVVHAVNED 312
+ QLLE+G +H DPHPGN DG++AY+DFG + + + + ++A +H VN D
Sbjct: 328 YCSFNQLLEYGFYHADPHPGNFLRTYDGQLAYLDFGMMGDFRPELRDGFMEACLHLVNRD 387
Query: 313 YAEMANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRI 372
+ +A DF LG L + S + AL ++Q++ +G+ + +F + G K +Y ++
Sbjct: 388 FKALAKDFVTLGLLPPTAEKSAVTKALTDVFQDAISRGVRNISFGDLLGDLGKTMYRFKF 447
Query: 373 RIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQVLFKD 432
RIP FSLVIRSL EGI + P++K L YP++A+++LTD +P L+ L +L+++
Sbjct: 448 RIPPYFSLVIRSLAVLEGIAIGISPNYKVLGSTYPWIARKILTDSSPQLKSSLQNLLYEE 507
Query: 433 NVFQWKRLENLIT--------LAKENVARMSSNPALR 461
VF+ RLE+L++ L ++ V SN A++
Sbjct: 508 GVFRIDRLESLLSESLRTETALVQKPVVGTESNIAMK 544
>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1770 PE=3 SV=1
Length = 585
Score = 247 bits (631), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 130/377 (34%), Positives = 212/377 (56%), Gaps = 2/377 (0%)
Query: 34 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEE 93
+A+ +R L +LGP+FIK GQ+ + R D+ +Y+ EL LQD+VP+F + A IIEEE
Sbjct: 84 QAKWIRENLLSLGPTFIKVGQLFSTRSDLFPAEYVEELSKLQDEVPAFSYEQAAGIIEEE 143
Query: 94 LGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTL 153
LG+P+ ++ +AAASLGQV++A L TGEDV +KVQRPG++ + DL + + +
Sbjct: 144 LGKPIAKLYRSFDPVPLAAASLGQVHKAQL-HTGEDVVVKVQRPGLKKLFTIDLAILKKI 202
Query: 154 ASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYK 213
A + G + I +E + L +E DY E R+ + F NF+ + VK+PRVY
Sbjct: 203 AQYFQNHPKWGRGRDWNGIYEECCKILWQETDYLREGRSADTFRRNFRGEDWVKVPRVYW 262
Query: 214 RLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGN 273
R + +++L +E++ GI+ + A++ AG++ +G A L QLL G FH DPHPGN
Sbjct: 263 RYTSTQILTLEYLPGIKISHYDALEAAGLERKELAQLGARAYLFQLLNHGFFHADPHPGN 322
Query: 274 I-FAMRDGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGTDV 332
+ + G + + DFG + E++ K L+D + ++ + N LG L + D+
Sbjct: 323 LAVSPEAGELIFYDFGMMGEITPDTKNKLMDTLFGVAEKNAERIVNSLVALGALKETEDM 382
Query: 333 SPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEGIC 392
PI +++ + N K + + ++ ++ Y+ R P F+ V+R+ T EG+
Sbjct: 383 GPIRRSVQFLLDNFMDKPFEEQSITKISDDLYEIAYDQPFRFPATFTFVMRAFSTLEGVG 442
Query: 393 FTLKPDFKFLEVAYPYV 409
L PDF F+ VA P+
Sbjct: 443 KGLDPDFNFMAVAQPFA 459
>sp|Q55884|Y095_SYNY3 Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0095 PE=3 SV=1
Length = 567
Score = 219 bits (559), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 134/427 (31%), Positives = 215/427 (50%), Gaps = 9/427 (2%)
Query: 5 VEIVWSLGLYWSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVR 64
V +++ L W LT R + RA+ L L LGP+FIK GQ L+ R DI+
Sbjct: 32 VFLLFVFFLSWDRLT----APRSAQRRYRRAQWLVQQLLYLGPTFIKIGQSLSTRADIIP 87
Query: 65 EDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLR 124
+Y+ LQD VP F ++ A +IE+EL ++ +F + +A+ASLGQV+RA L
Sbjct: 88 AEYIEAFTQLQDRVPPFDSRQAIAVIEQELHGAIDEIFQQFEVTPLASASLGQVHRAVL- 146
Query: 125 ETGEDVAIKVQRPGIEPIIYRDLFLF----RTLASFLNGISIQKLGCNAELIVDEFGEKL 180
TGE V +KVQRPG++ ++ D L R +L G E I EF L
Sbjct: 147 PTGEAVVVKVQRPGLDSLLNLDFELLHQTLRLAKRWLPGFRRLAQKYEIEAIYQEFFSLL 206
Query: 181 LEELDYTLEARNMEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGA 240
E+DY E +N E F +NF D P V++P +Y + + VL +E++ GI+ D QA++ A
Sbjct: 207 FLEIDYIHEGKNAERFRQNFADYPRVRVPEIYWQYTTRMVLTLEYLPGIKVDDRQALETA 266
Query: 241 GIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQI 300
GI++ + G+ A L+QLL G F DPHPGN+ G + + DFG +AE+ K
Sbjct: 267 GINLDLVIQTGICAYLKQLLVDGFFQSDPHPGNMAVDSQGDLIFYDFGTMAEVKIIAKDQ 326
Query: 301 LIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVT 360
++ + +D ++ +G + D+SPI + + N K + F V
Sbjct: 327 MVQTFFAVLRKDTNQVLEALIYMGLVEPKGDLSPIKRIINFLLDNFRDKPIDIKAFDQVG 386
Query: 361 GQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPA 420
+ + R+P + + +++S+ T +GI L P + + + P++ + P +
Sbjct: 387 EEVYAMFQQQPFRLPPQMTFILKSISTLDGIARALDPRYNLIAASQPFIQSITVAQPKRS 446
Query: 421 LRERLIQ 427
L L+Q
Sbjct: 447 LAMALLQ 453
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
Length = 508
Score = 217 bits (553), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 131/395 (33%), Positives = 202/395 (51%), Gaps = 8/395 (2%)
Query: 22 CLVGRDKEV-VPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPS 80
C V RD +P R +R L +LGP F+K GQVL+ R D++ +Y +EL +LQD VP
Sbjct: 38 CPVRRDTSAPLPQR---VRLALESLGPIFVKFGQVLSTRRDLLPPEYADELALLQDRVPP 94
Query: 81 FPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRET----GEDVAIKVQR 136
F +A ++E LGR +E +F + +A+AS+ QV++A LR+ G +VA+KV R
Sbjct: 95 FDGDIARQVVERSLGRKVEELFVDFDLKPVASASVAQVHKAWLRQPDGGRGREVAVKVLR 154
Query: 137 PGIEPIIYRDLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDF 196
PGI P+I +DL L RTLA ++ + +V EF + L +ELD EA N
Sbjct: 155 PGILPVIEQDLSLMRTLAGWVEKLFADGKRLKPREVVAEFDKYLHDELDMMHEAANASQL 214
Query: 197 LENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAAL 256
NFK + +P V+ S VL +EW+ GI + ++ AG+D+ GV
Sbjct: 215 RRNFKGSDMLIVPEVFYDYSSREVLTLEWMHGIPVGQIERLREAGVDLQKLSRFGVEIFF 274
Query: 257 RQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEM 316
Q+ G FH D HPGNIF DGR +DFG V L+ +K L + N DY +
Sbjct: 275 TQVFRHGFFHADMHPGNIFVAADGRYIALDFGIVGSLTDTDKHYLAVNFLAFFNRDYHRV 334
Query: 317 ANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPE 376
A G++ + T + A+ + + K L++ +F V + + + + I
Sbjct: 335 ATAHIESGWVPRDTRAEELEAAVRTVCEPIFEKPLSEISFGMVLLRLFETSRRFNVEIQP 394
Query: 377 RFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAK 411
+ L+ ++LL EG+ L P+ + A P++ K
Sbjct: 395 QLVLLQKTLLNIEGLGRQLDPELDLWDTAKPFLTK 429
>sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1
Length = 503
Score = 210 bits (534), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 125/377 (33%), Positives = 197/377 (52%), Gaps = 1/377 (0%)
Query: 35 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 94
A +LR L +LGP FIK GQVL+ RPD++ DY EL LQD VP F +++ IE+ L
Sbjct: 51 AVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSL 110
Query: 95 GRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 154
G+ +E ++++ ++ IA+AS+ QV++A L +GE VA+KV RP + P+I +DL L R A
Sbjct: 111 GQSIEKLYAEFETEPIASASIAQVHKARL-HSGEQVAVKVLRPNLLPVIEQDLSLMRFGA 169
Query: 155 SFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKR 214
++ + +V EF + L +ELD EA N NF++ + +P+V+
Sbjct: 170 GWVERLFADGKRLKPREVVAEFDKYLHDELDLMREAANASQLGRNFQNSDMLIVPKVFYD 229
Query: 215 LSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNI 274
S VL +EW+DG +D +K GID+ GV Q+ G FH D HPGNI
Sbjct: 230 YCTSDVLTIEWMDGTPVSDIAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPGNI 289
Query: 275 FAMRDGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSP 334
D R +DFG V L+ +K+ L + N DY +A G++ T
Sbjct: 290 LVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHIESGWVPADTRAEE 349
Query: 335 IIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFT 394
+ A+ A+ + K ++ +F V + ++ + + I + L+ ++LL EG+
Sbjct: 350 LEAAVRAVCEPVFNKPISQISFGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQ 409
Query: 395 LKPDFKFLEVAYPYVAK 411
L PD + A P++ K
Sbjct: 410 LDPDLDLWKTAKPFLVK 426
>sp|Q9JVQ5|UBIB_NEIMA Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=ubiB PE=3 SV=1
Length = 503
Score = 206 bits (523), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 125/377 (33%), Positives = 196/377 (51%), Gaps = 1/377 (0%)
Query: 35 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 94
A +LR L +LGP FIK GQVL+ RPD++ DY EL LQD VP F +++ IE+ L
Sbjct: 51 AVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSL 110
Query: 95 GRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 154
G+ +E ++++ ++ IA+AS+ QV++A L +GE VA+KV RP + P+I +DL L R A
Sbjct: 111 GQSIEKLYAEFETEPIASASIAQVHKARL-HSGERVAVKVLRPNLLPLIEQDLSLMRFGA 169
Query: 155 SFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKR 214
+++ + +V EF + L +ELD EA N NF + + +P+V+
Sbjct: 170 AWVERLFSDGRRLKPLEVVAEFDKYLHDELDLMREAANAGQLGRNFHNSNMLIVPKVFYD 229
Query: 215 LSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNI 274
S VL +EW+DG D +K GID+ GV Q+ G FH D HPGNI
Sbjct: 230 YCTSDVLTIEWMDGTPVADIAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPGNI 289
Query: 275 FAMRDGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSP 334
D R +DFG V L+ +K+ L + N DY +A G++ T
Sbjct: 290 LVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHIESGWVPADTRAEE 349
Query: 335 IIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFT 394
+ A+ A+ + K ++ +F V + ++ + + I + L+ ++LL EG+
Sbjct: 350 LEAAVRAVCEPVFNKPISQISFGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQ 409
Query: 395 LKPDFKFLEVAYPYVAK 411
L PD + A P++ K
Sbjct: 410 LDPDLDLWKTAKPFLVK 426
>sp|B7V3F8|UBIB_PSEA8 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain LESB58) GN=ubiB PE=3 SV=1
Length = 533
Score = 201 bits (510), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 138/456 (30%), Positives = 228/456 (50%), Gaps = 16/456 (3%)
Query: 9 WSLGLYWSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYM 68
W L L + L + L R E+ R +LR L +LGP FIK GQ+L+ R D++ +D
Sbjct: 33 WWLRLLGATLPWRWLPRRKLELT--RGARLRLALQDLGPIFIKFGQILSTRRDLLPDDIA 90
Query: 69 NELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGE 128
NEL LQD VP FP ++A IEE+LG +E VF++ + +A+AS+ QV+ A L+ +GE
Sbjct: 91 NELAWLQDKVPPFPPELAVKRIEEQLGAKIEQVFARFEREPLASASVAQVHAARLK-SGE 149
Query: 129 DVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTL 188
+V +KV RP +EP+I D+ LA +S + + +V ++ + +++ELD
Sbjct: 150 EVVVKVIRPNLEPVIRSDIAWLFILARLAERVSSEARRLHPVEVVSDYEKTIVDELDLLR 209
Query: 189 EARNMEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFL 248
EA N NF+ P + +P+VY +VLVME I GI TD + ++ D
Sbjct: 210 EAANASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALA 269
Query: 249 TVGVSAALRQLLEFGLFHGDPHPGNIF----AMRDGRIAYVDFGNVAELSQQNKQILIDA 304
GV Q+ FH D HPGNIF A + VD G V L+ +++ L
Sbjct: 270 ERGVEIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARN 329
Query: 305 VVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFN 364
++ DY ++A G++ T V+ A+ + + K L D +F V +
Sbjct: 330 LIAFFKRDYRKVAQLHIDSGWVPAETKVNDFEAAIRTVCEPIFEKPLKDISFGQVLLRLF 389
Query: 365 KLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRER 424
+ + + I + L+ ++LL EG+ L P+ A P++ + +RER
Sbjct: 390 QTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFLER--------WMRER 441
Query: 425 LI-QVLFKDNVFQWKRLENLITLAKENVARMSSNPA 459
+ + L ++ Q +++ +L +A++ + R+S A
Sbjct: 442 VSPKQLLRNFQQQVEQVPHLSQMARDTLERLSQPHA 477
>sp|Q9HUB8|UBIB_PSEAE Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=ubiB PE=3 SV=1
Length = 533
Score = 201 bits (510), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 138/456 (30%), Positives = 228/456 (50%), Gaps = 16/456 (3%)
Query: 9 WSLGLYWSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYM 68
W L L + L + L R E+ R +LR L +LGP FIK GQ+L+ R D++ +D
Sbjct: 33 WWLRLLGATLPWRWLPRRKLELT--RGARLRLALQDLGPIFIKFGQILSTRRDLLPDDIA 90
Query: 69 NELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGE 128
NEL LQD VP FP ++A IEE+LG +E VF++ + +A+AS+ QV+ A L+ +GE
Sbjct: 91 NELAWLQDKVPPFPPELAVKRIEEQLGAKIEQVFARFEREPLASASVAQVHAARLK-SGE 149
Query: 129 DVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTL 188
+V +KV RP +EP+I D+ LA +S + + +V ++ + +++ELD
Sbjct: 150 EVVVKVIRPNLEPVIRSDIAWLFILARLAERVSSEARRLHPVEVVSDYEKTIVDELDLLR 209
Query: 189 EARNMEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFL 248
EA N NF+ P + +P+VY +VLVME I GI TD + ++ D
Sbjct: 210 EAANASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALA 269
Query: 249 TVGVSAALRQLLEFGLFHGDPHPGNIF----AMRDGRIAYVDFGNVAELSQQNKQILIDA 304
GV Q+ FH D HPGNIF A + VD G V L+ +++ L
Sbjct: 270 ERGVEIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARN 329
Query: 305 VVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFN 364
++ DY ++A G++ T V+ A+ + + K L D +F V +
Sbjct: 330 LIAFFKRDYRKVAQLHIDSGWVPAETKVNDFEAAIRTVCEPIFEKPLKDISFGQVLLRLF 389
Query: 365 KLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRER 424
+ + + I + L+ ++LL EG+ L P+ A P++ + +RER
Sbjct: 390 QTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFLER--------WMRER 441
Query: 425 LI-QVLFKDNVFQWKRLENLITLAKENVARMSSNPA 459
+ + L ++ Q +++ +L +A++ + R+S A
Sbjct: 442 VSPKQLLRNFQQQVEQVPHLSQMARDTLERLSQPHA 477
>sp|Q02EV2|UBIB_PSEAB Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=ubiB PE=3 SV=1
Length = 533
Score = 200 bits (509), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 138/456 (30%), Positives = 228/456 (50%), Gaps = 16/456 (3%)
Query: 9 WSLGLYWSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYM 68
W L L + L + L R E+ R +LR L +LGP FIK GQ+L+ R D++ +D
Sbjct: 33 WWLRLLGATLPWRWLPRRKLELT--RGARLRLALQDLGPIFIKFGQILSTRRDLLPDDIA 90
Query: 69 NELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGE 128
NEL LQD VP FP ++A IEE+LG +E VF++ + +A+AS+ QV+ A L+ +GE
Sbjct: 91 NELAWLQDKVPPFPPELAVKRIEEQLGAKIEQVFARFEREPLASASVAQVHAARLK-SGE 149
Query: 129 DVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTL 188
+V +KV RP +EP+I D+ LA +S + + +V ++ + +++ELD
Sbjct: 150 EVVVKVIRPNLEPVIRSDIAWLFILARLAERVSSEARRLHPVEVVSDYEKTIVDELDLLR 209
Query: 189 EARNMEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFL 248
EA N NF+ P + +P+VY +VLVME I GI TD + ++ D
Sbjct: 210 EAANASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALA 269
Query: 249 TVGVSAALRQLLEFGLFHGDPHPGNIF----AMRDGRIAYVDFGNVAELSQQNKQILIDA 304
GV Q+ FH D HPGNIF A + VD G V L+ +++ L
Sbjct: 270 ERGVEIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARN 329
Query: 305 VVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFN 364
++ DY ++A G++ T V+ A+ + + K L D +F V +
Sbjct: 330 LIAFFKRDYRKVAQLHIDSGWVPAETKVNDFEAAIRTVCEPIFEKPLKDISFGQVLLRLF 389
Query: 365 KLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRER 424
+ + + I + L+ ++LL EG+ L P+ A P++ + +RER
Sbjct: 390 QTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFLER--------WMRER 441
Query: 425 LI-QVLFKDNVFQWKRLENLITLAKENVARMSSNPA 459
+ + L ++ Q +++ +L +A++ + R+S A
Sbjct: 442 VSPKQLLRNFQQQVEQVPHLSQMARDTLERLSQPHA 477
>sp|A6VDI8|UBIB_PSEA7 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain PA7) GN=ubiB PE=3 SV=1
Length = 533
Score = 200 bits (508), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 138/456 (30%), Positives = 228/456 (50%), Gaps = 16/456 (3%)
Query: 9 WSLGLYWSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYM 68
W L L + L + L R E+ R +LR L +LGP FIK GQ+L+ R D++ +D
Sbjct: 33 WWLRLLGAALPWRWLPRRKLELT--RGARLRLALQDLGPIFIKFGQILSTRRDLLPDDIA 90
Query: 69 NELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGE 128
NEL LQD VP FP ++A IEE+LG +E VF++ + +A+AS+ QV+ A L+ +GE
Sbjct: 91 NELAWLQDKVPPFPPELAVKRIEEQLGAKIEQVFARFEREPLASASVAQVHAARLK-SGE 149
Query: 129 DVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTL 188
+V +KV RP +EP+I D+ LA +S + + +V ++ + +++ELD
Sbjct: 150 EVVVKVIRPNLEPVIRSDIAWLFILARLAERVSSEARRLHPVEVVSDYEKTIVDELDLLR 209
Query: 189 EARNMEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFL 248
EA N NF+ P + +P+VY +VLVME I GI TD + ++ D
Sbjct: 210 EAANASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALA 269
Query: 249 TVGVSAALRQLLEFGLFHGDPHPGNIF----AMRDGRIAYVDFGNVAELSQQNKQILIDA 304
GV Q+ FH D HPGNIF A + VD G V L+ +++ L
Sbjct: 270 ERGVEIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARN 329
Query: 305 VVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFN 364
++ DY ++A G++ T V+ A+ + + K L D +F V +
Sbjct: 330 LIAFFKRDYRKVAQLHIDSGWVPAETKVNDFEAAIRTVCEPIFEKPLKDISFGQVLLRLF 389
Query: 365 KLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRER 424
+ + + I + L+ ++LL EG+ L P+ A P++ + +RER
Sbjct: 390 QTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFLER--------WMRER 441
Query: 425 LI-QVLFKDNVFQWKRLENLITLAKENVARMSSNPA 459
+ + L ++ Q +++ +L +A++ + R+S A
Sbjct: 442 VSPKQLLRNFQQQVEQVPHLSQMARDTLERLSQPHA 477
>sp|C4L962|UBIB_TOLAT Probable ubiquinone biosynthesis protein UbiB OS=Tolumonas auensis
(strain DSM 9187 / TA4) GN=ubiB PE=3 SV=1
Length = 543
Score = 195 bits (495), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 127/406 (31%), Positives = 199/406 (49%), Gaps = 5/406 (1%)
Query: 26 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQV 85
R++ R +LR+ LGP FIK GQ+L+ R D++ D EL +LQD VPSF Q+
Sbjct: 45 RNRYPEQSRGARLRHAFEGLGPVFIKFGQMLSTRRDLLPPDLAEELAMLQDRVPSFDGQL 104
Query: 86 AFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYR 145
A IE+ LG+P+EA+F+ Q +A+AS+ QV+ A L+E ++ IKV RP I+P+I
Sbjct: 105 AREQIEQALGQPIEALFADFDQQPLASASVAQVHTARLKENNAEIVIKVIRPDIKPVIND 164
Query: 146 DLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPT 205
D+ L R A + I +++E+ LL+EL+ EA N NF++
Sbjct: 165 DIRLMRLCAKIV-AFLIPNNRLRPVEVIEEYRRTLLDELNLMSEAANAIQLRRNFENSSH 223
Query: 206 VKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLF 265
+ +P VY VLVME I GI +D A++ G D+ GV Q+ F
Sbjct: 224 LYVPLVYSDYCRESVLVMERIYGIPVSDRAALEANGTDLKLLAERGVEVFFTQVFRDSFF 283
Query: 266 HGDPHPGNIFAM----RDGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFT 321
H D HPGN+F D + +D G V L++Q+K+ L + + N DY ++A
Sbjct: 284 HADMHPGNVFVSYEHPHDPQWIGIDCGIVGTLNRQDKRYLAENFLAFFNRDYRKVAELHV 343
Query: 322 RLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLV 381
+ G++ T V AL + + K LA+ +F V + + + + L+
Sbjct: 344 QSGWVPPDTKVEEFESALRTVLEPIFAKPLAEISFGQVLLNLFNTARRFNMHVQPQLVLL 403
Query: 382 IRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQ 427
++LL EG+ L P + A P++ + P R I+
Sbjct: 404 QKTLLYIEGLGRHLYPQLDLWQTAKPFLEHWMRQQIGPKAAWRAIK 449
>sp|Q8Y275|UBIB_RALSO Probable ubiquinone biosynthesis protein UbiB OS=Ralstonia
solanacearum (strain GMI1000) GN=ubiB PE=3 SV=1
Length = 525
Score = 195 bits (495), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 123/385 (31%), Positives = 189/385 (49%), Gaps = 7/385 (1%)
Query: 34 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEE 93
R +LR L LGP F+K GQVL+ R D++ D +EL LQD VP F ++A I+E
Sbjct: 49 RGERLRLALEQLGPIFVKFGQVLSTRRDLLPPDVADELAKLQDRVPPFDPKIAAAIVERS 108
Query: 94 LGRPLEAVFSKISSQTIAAASLGQVYRATLR---ETGEDVAIKVQRPGIEPIIYRDLFLF 150
LG+PL A+F + +A+AS+ QV+ ATLR + G +VA+KV RPG+ P+I DL L
Sbjct: 109 LGKPLSALFHRFDHHPVASASIAQVHFATLRGGPDDGREVAVKVLRPGMLPVIDSDLALM 168
Query: 151 RTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPR 210
R +A+++ + +V EF + L +ELD EA N NF + +P
Sbjct: 169 RDVATWMEKLWADGKRLKPREVVAEFDKYLHDELDLMREAANASQLRRNFAKSELLLVPE 228
Query: 211 VYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPH 270
V+ S V VME + G+R + ++ AG+D GV Q+ G FH D H
Sbjct: 229 VFWDWCTSEVFVMERMHGVRVSHADELRAAGVDTHKLARDGVEIFFTQVFRDGFFHADMH 288
Query: 271 PGNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFL 326
PGNI GR +DFG V LS+ +K L + DY +A G+
Sbjct: 289 PGNILVSVAPESLGRYIALDFGIVGALSEFDKNYLAQNFLAFFQRDYHRVALLHVESGWA 348
Query: 327 AKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLL 386
+ T V + A+ A + + L + + V + + + + + + L+ ++LL
Sbjct: 349 PEETRVEELEGAIRACCEPYFDRPLGEISLGLVLMRLFQTSRRFNVEVQPQLVLLQKTLL 408
Query: 387 TQEGICFTLKPDFKFLEVAYPYVAK 411
EG+ L PD + A P++ +
Sbjct: 409 NVEGLGRQLDPDLDLWKTAKPFLER 433
>sp|Q3KJC7|UBIB_PSEPF Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf0-1) GN=ubiB PE=3 SV=1
Length = 534
Score = 194 bits (494), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 133/431 (30%), Positives = 215/431 (49%), Gaps = 14/431 (3%)
Query: 34 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEE 93
R +LR L +LGP FIK GQ+L+ R D++ ED +EL LQD VP F +Q++ +IEE+
Sbjct: 55 RGARLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMRLQDRVPPFDSQLSVKLIEEQ 114
Query: 94 LGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTL 153
LG+ + VFS+ + +A+AS+ QV+ A L+ TGE+V +KV RPG++PII +DL L
Sbjct: 115 LGKKISEVFSRFDVEPLASASVAQVHAAQLK-TGEEVVVKVIRPGLKPIIAQDLAWLFIL 173
Query: 154 ASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYK 213
A +S + +V ++ + + +ELD EA N NF+ P + +P+VY
Sbjct: 174 ARAAEKVSADARLLHPVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQVYW 233
Query: 214 RLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGN 273
+VLVME I GI+ TD + D+ GV Q+ FH D HPGN
Sbjct: 234 DWCRPKVLVMERIYGIQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFHADMHPGN 293
Query: 274 IFAMR----DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKG 329
IF + +D G V L+ +++ L + DY +A G++
Sbjct: 294 IFVSTVNPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSGWVPAE 353
Query: 330 TDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQE 389
T ++ A+ + + K L D +F V + + + + + + L+ ++LL E
Sbjct: 354 TKLNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIE 413
Query: 390 GICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQVLFKDNV-FQWKRLENLITLAK 448
G+ L PD A P++ + +RER+ NV Q+++L +L +A+
Sbjct: 414 GLGRQLYPDLDLWNTAQPFLER--------WMRERVSPKALLGNVQSQFEQLPHLANMAR 465
Query: 449 ENVARMSSNPA 459
+ + RMS A
Sbjct: 466 DLLERMSQPHA 476
>sp|B9ME24|UBIB_ACIET Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax ebreus
(strain TPSY) GN=ubiB PE=3 SV=1
Length = 521
Score = 192 bits (488), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 132/438 (30%), Positives = 204/438 (46%), Gaps = 21/438 (4%)
Query: 2 SRGVEIVWSLGLY-------------WSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPS 48
+RG+ IVW + Y W + K P R ++LR L +LGP
Sbjct: 5 ARGITIVWVVLRYGLDELVLSTFRQPWLRAVTRVITFGRKLDAP-RGQRLREALESLGPI 63
Query: 49 FIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQ 108
F+K GQVL+ R D++ D +EL +LQD VP F VA IE RP+ VF Q
Sbjct: 64 FVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERAFRRPIGEVFVSFDRQ 123
Query: 109 TIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISIQKL 165
+A+AS+ QV+ A +R+ +VA+KV RPG+ P+I +DL L R +A ++ +S
Sbjct: 124 PVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALMRMMAGWVESLSADGK 183
Query: 166 GCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEW 225
+V EF L +ELD EA N N + V IP V+ + VLVME
Sbjct: 184 RLKPREVVAEFDNYLHDELDLVREAANAAQLRRNMQGLDLVLIPEVFWDFCHAEVLVMER 243
Query: 226 IDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRD----GR 281
+ G+ + ++ AG+D+ GV+ Q+ G FH D HPGNI GR
Sbjct: 244 MKGVPINQVERLRSAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPGNIQVSLAPETFGR 303
Query: 282 IAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALEA 341
+DFG V L++ +K+ L DY +A G++ T V+ + A+
Sbjct: 304 YISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRVAELHIESGWVPAHTRVNELEAAIRT 363
Query: 342 IWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFKF 401
+ + + L + + V + + +++ I + L+ ++LL EG+ L PD
Sbjct: 364 VCEPYFDRPLKEISLGMVLLRLFQTSRRFQVEIQPQLVLLQKTLLNIEGLGRQLDPDLDL 423
Query: 402 LEVAYPYVAKRLLTDPNP 419
A P++ K +L P
Sbjct: 424 WSTAKPFLEKWMLDQLGP 441
>sp|A1W4D7|UBIB_ACISJ Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax sp.
(strain JS42) GN=ubiB PE=3 SV=1
Length = 521
Score = 192 bits (487), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 132/438 (30%), Positives = 203/438 (46%), Gaps = 21/438 (4%)
Query: 2 SRGVEIVWSLGLY-------------WSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPS 48
+RG+ IVW + Y W + K P R ++LR L +LGP
Sbjct: 5 ARGITIVWVVLRYGLDELVLSTFRQPWLRAVTRVITFGRKLDAP-RGQRLREALESLGPI 63
Query: 49 FIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQ 108
F+K GQVL+ R D++ D +EL +LQD VP F VA IE RP+ VF Q
Sbjct: 64 FVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERAFRRPIGEVFVSFDRQ 123
Query: 109 TIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISIQKL 165
+A+AS+ QV+ A +R+ +VA+KV RPG+ P+I +DL L R +A ++ +S
Sbjct: 124 PVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALMRMMAGWVESLSADGK 183
Query: 166 GCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEW 225
+V EF L +ELD EA N N + V IP V+ + VLVME
Sbjct: 184 RLKPREVVAEFDNYLHDELDLVREAANAAQLRRNMQGLDLVLIPEVFWDFCHAEVLVMER 243
Query: 226 IDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRD----GR 281
+ G+ ++ AG+D+ GV+ Q+ G FH D HPGNI GR
Sbjct: 244 MKGVPINQVDRLRSAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPGNIQVSLAPETFGR 303
Query: 282 IAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALEA 341
+DFG V L++ +K+ L DY +A G++ T V+ + A+
Sbjct: 304 YISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRVAELHIESGWVPAHTRVNELEAAIRT 363
Query: 342 IWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFKF 401
+ + + L + + V + + +++ I + L+ ++LL EG+ L PD
Sbjct: 364 VCEPYFDRPLKEISLGMVLLRLFQTSRRFQVEIQPQLVLLQKTLLNIEGLGRQLDPDLDL 423
Query: 402 LEVAYPYVAKRLLTDPNP 419
A P++ K +L P
Sbjct: 424 WSTAKPFLEKWMLDQLGP 441
>sp|P73577|Y889_SYNY3 Uncharacterized protein slr0889 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr0889 PE=3 SV=1
Length = 408
Score = 191 bits (485), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 119/365 (32%), Positives = 190/365 (52%), Gaps = 16/365 (4%)
Query: 38 LRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRP 97
L +L LGP +IK GQ+L+ RPD++ Y+N L LQ +VP P ++++ E +P
Sbjct: 46 LTKILVELGPFYIKLGQLLSTRPDLLPPRYINALTALQSNVPPLPWSAIEDLLQREFPQP 105
Query: 98 LEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASFL 157
L F +I S+ IAA S+GQ++RA L ++GE VAIKV+RPGI+ I+ +D L + +A L
Sbjct: 106 LGETFQEIESEPIAAGSIGQIHRAVL-QSGETVAIKVKRPGIDVIVEQDSLLIKDVAELL 164
Query: 158 NGISIQKLGCNAELI--VDEFGEKLLEELDYTLEARNMEDFLENFKD----DPT-VKIPR 210
++ + G N +++ DEF + + EL++ EA + N DP + IP+
Sbjct: 165 ---ALTEFGQNYDIVKLADEFTQTVKAELNFDTEAAYTNNLRTNLAKTTWFDPNQLVIPK 221
Query: 211 VYKRLSGSRVLVMEWIDGIRC-----TDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLF 265
VY L+ + LV+EW+DG+ T P + K T+ A +QL G F
Sbjct: 222 VYWELTNQKFLVLEWLDGVPILTADLTQPPSDKDIAEKKKEITTLLFRAFFQQLYVDGFF 281
Query: 266 HGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGF 325
H DPHPGNIF + DGR+A +D G V L + +Q+L + ++ V+ D A L
Sbjct: 282 HADPHPGNIFYLADGRLALIDCGMVGRLDPRTRQLLTEMLLAIVDLDAKRCAQLTVELSE 341
Query: 326 LAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSL 385
+ + E + + L++FNF V +F ++ ++++P L + L
Sbjct: 342 SVGRVNFQRLEVDYERMLRKYYDLSLSEFNFSEVVYEFLRIARVNKLKVPACLGLYAKCL 401
Query: 386 LTQEG 390
EG
Sbjct: 402 ANLEG 406
>sp|B1XWR5|UBIB_LEPCP Probable ubiquinone biosynthesis protein UbiB OS=Leptothrix
cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ubiB
PE=3 SV=1
Length = 522
Score = 191 bits (485), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 122/382 (31%), Positives = 188/382 (49%), Gaps = 5/382 (1%)
Query: 34 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEE 93
R +LR L LGP F+K GQVL+ R D++ D NEL LQD VP FP+ V+ + +
Sbjct: 49 RGVRLRMALERLGPIFVKFGQVLSTRRDLIPHDIANELAKLQDRVPPFPSDVSRAAVVQS 108
Query: 94 LGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTL 153
LGRP+E VF+ + +A+AS+ QV+ L + G +VA+KV RP + II DL L R
Sbjct: 109 LGRPIEEVFASFDADPVASASIAQVHFGVLHD-GREVAVKVLRPNVLNIIEADLALLRVA 167
Query: 154 ASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYK 213
A++L +S +V EF L +ELD EA N N + +P +
Sbjct: 168 AAWLERLSPDGRRLRPREVVAEFDNYLHDELDLGREAANAAQLRRNMGGLDLIMLPEMIW 227
Query: 214 RLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGN 273
LS + VLVME + G+ + + ++ AGID+ GV+ Q+ G FH D HPGN
Sbjct: 228 DLSSAEVLVMERMHGVPISQIETLRAAGIDIPKLARDGVTIFFTQVFRDGFFHADMHPGN 287
Query: 274 IFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKG 329
I GR +DFG V L ++K+ L + DY +A G++
Sbjct: 288 IMVSTAPATFGRYIALDFGIVGTLDSRDKEYLAQNFLAFFRRDYRRVAELHIESGWVPAS 347
Query: 330 TDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQE 389
T V + A+ A+ + + L D + V + + + + I + L+ ++LL E
Sbjct: 348 TRVDELEGAVRAVCEPHFDRPLKDISLGQVLLRLFQTSRRFNVEIQPQLVLLQKTLLNVE 407
Query: 390 GICFTLKPDFKFLEVAYPYVAK 411
G+ L P+ + A P++ +
Sbjct: 408 GLGRQLDPELDLWQTAKPFLER 429
>sp|Q4KJL4|UBIB_PSEF5 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=ubiB PE=3
SV=1
Length = 534
Score = 189 bits (481), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 133/436 (30%), Positives = 216/436 (49%), Gaps = 24/436 (5%)
Query: 34 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEE 93
R +LR L +LGP FIK GQ+L+ R D++ ED +EL +LQD VP F +Q + +IE +
Sbjct: 55 RGARLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMLLQDRVPPFDSQKSVALIEAQ 114
Query: 94 LGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTL 153
LG+ + VFS+ + +A+AS+ QV+ A L+ TGE+V +KV RPG++PII +DL L
Sbjct: 115 LGKKISDVFSRFDIEPLASASVAQVHAAKLK-TGEEVVVKVIRPGLKPIIAQDLAWLFIL 173
Query: 154 ASFLNGISIQKLGCNAEL-----IVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKI 208
A + +KL +A L +V ++ + + +ELD EA N NF+ P + +
Sbjct: 174 AR-----AAEKLSADARLLHPVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYV 228
Query: 209 PRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGD 268
P+VY +VLVME I GI+ TD + D+ GV Q+ FH D
Sbjct: 229 PQVYWDWCRPKVLVMERIYGIQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFHAD 288
Query: 269 PHPGNIFAMR----DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLG 324
HPGNIF + +D G V L+ +++ L + DY +A G
Sbjct: 289 MHPGNIFVSTVQPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSG 348
Query: 325 FLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRS 384
++ T ++ A+ + + K L D +F V + + + + + + L+ ++
Sbjct: 349 WVPAETKLNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKT 408
Query: 385 LLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQVLFKDNVF-QWKRLENL 443
LL EG+ L PD A P++ + +RER+ N+ Q ++L +L
Sbjct: 409 LLNIEGLGRQLYPDLDLWNTAQPFLER--------WMRERVSPKAVLGNIHSQIEQLPHL 460
Query: 444 ITLAKENVARMSSNPA 459
+ ++ + RMS A
Sbjct: 461 ANMTRDLLERMSQPHA 476
>sp|C3K8U2|UBIB_PSEFS Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain SBW25) GN=ubiB PE=3 SV=1
Length = 534
Score = 189 bits (481), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 131/437 (29%), Positives = 214/437 (48%), Gaps = 14/437 (3%)
Query: 28 KEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAF 87
K++ R +LR L +LGP FIK GQ+L+ R D++ ED +EL +LQD VP F +Q +
Sbjct: 49 KQLELSRGARLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMLLQDRVPPFDSQQSM 108
Query: 88 NIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDL 147
+IEE+LG+ + VFS+ +A+AS+ QV+ A L+ TGE+V +KV RPG++PII +DL
Sbjct: 109 KLIEEQLGKKISEVFSRFDVDPLASASVAQVHAAQLK-TGEEVVVKVIRPGLKPIIGQDL 167
Query: 148 FLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVK 207
LA S + +V ++ + + +ELD EA N NF+ P +
Sbjct: 168 AWLFILARAAERFSADARLLHPVDVVADYEKTIYDELDLLREAANASQLKRNFEGSPLLY 227
Query: 208 IPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHG 267
+P+VY +VLVME I G++ TD + D+ GV Q+ FH
Sbjct: 228 VPQVYWDWCRPKVLVMERIYGVQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFHA 287
Query: 268 DPHPGNIFAMR----DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRL 323
D HPGNIF + +D G V L+ +++ L + DY +A
Sbjct: 288 DMHPGNIFVSTVNPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDS 347
Query: 324 GFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIR 383
G++ T ++ A+ + + K L D +F V + + + + + + L+ +
Sbjct: 348 GWVPAETKLNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQK 407
Query: 384 SLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQVLFKDNVF-QWKRLEN 442
+LL EG+ L PD A P++ + +RER+ N+ Q ++L +
Sbjct: 408 TLLNIEGLGRQLYPDLDLWNTAQPFLER--------WMRERMSPKTVLGNLHSQMEQLPH 459
Query: 443 LITLAKENVARMSSNPA 459
L + ++ + RMS A
Sbjct: 460 LANMTRDLLERMSQPHA 476
>sp|Q48PJ6|UBIB_PSE14 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
GN=ubiB PE=3 SV=1
Length = 539
Score = 189 bits (481), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 135/447 (30%), Positives = 218/447 (48%), Gaps = 16/447 (3%)
Query: 18 LTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDD 77
L + L R E+ R + R L +LGP FIK GQ+L+ R D++ ED +EL +LQD
Sbjct: 41 LPWRWLPRRKSEL--SRGVRFRLALQDLGPIFIKFGQLLSTRRDLLPEDIADELMLLQDR 98
Query: 78 VPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRP 137
VP F QVA N+IEE+LG + VFS+ +A+AS+ QV+ A L+ TGE+V +KV RP
Sbjct: 99 VPPFDQQVAINLIEEQLGARICDVFSRFDETPLASASVAQVHAACLK-TGEEVVVKVVRP 157
Query: 138 GIEPIIYRDLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFL 197
G++P+I +DL LA +S + +V ++ + + +ELD EA N
Sbjct: 158 GLKPVIGQDLAWLFILARMAERVSADARLLHPVQVVMDYEKTIYDELDLLREAANSSQLR 217
Query: 198 ENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALR 257
NF+ + +P+VY +VLVME I G++ TD + D+ GV
Sbjct: 218 RNFEGSDLLYVPQVYWDWCRPKVLVMERIYGLQVTDMAGLADQRTDMKLLAERGVEIFFT 277
Query: 258 QLLEFGLFHGDPHPGNIFAMR----DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDY 313
Q+ FH D HPGNIF + +D G V L+ +++ L + DY
Sbjct: 278 QIFRDSFFHADMHPGNIFVSTVNPWSPKYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDY 337
Query: 314 AEMANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIR 373
+A G++ T ++ A+ + + K L D +F V + + + +
Sbjct: 338 RRVAQLHIDSGWVPAETKLNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRFNME 397
Query: 374 IPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLI-QVLFKD 432
+ + L+ ++LL EG+ L PD A PY+ + +RER+ + LF +
Sbjct: 398 VQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAQPYLER--------WMRERVSPKTLFGN 449
Query: 433 NVFQWKRLENLITLAKENVARMSSNPA 459
Q ++L ++ + ++ + RMS A
Sbjct: 450 LQSQVEQLPHIAGMTRDLLERMSRPHA 476
>sp|A1SAK0|UBIB_SHEAM Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
amazonensis (strain ATCC BAA-1098 / SB2B) GN=ubiB PE=3
SV=1
Length = 549
Score = 188 bits (478), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 116/389 (29%), Positives = 201/389 (51%), Gaps = 4/389 (1%)
Query: 35 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 94
+L+ + LGP +IK GQ+L+ R D++ +++ EL +LQD VP+F + +A IE EL
Sbjct: 54 GERLKLAMQELGPVYIKFGQMLSTRRDLLSDEWAQELSMLQDRVPAFDSALAREAIEAEL 113
Query: 95 GRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 154
P++++F +A+AS+ QV+ ATL+ G+ V +KV RP +E I DL L +A
Sbjct: 114 KAPIDSLFDDFDDTPLASASISQVHTATLKSNGQQVVLKVLRPNVEANIKADLELMLQVA 173
Query: 155 SFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKR 214
+++N + + +V+++ +L EL+ LEA N NF D + IP VY+
Sbjct: 174 TWVNRLLGEGNRLRPVEVVEDYQNTILGELNLKLEALNATKLRNNFLDSDALYIPYVYEE 233
Query: 215 LSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNI 274
L R++VME IDGI +D +A+ G ++ GV Q+ FH D HPGNI
Sbjct: 234 LCHPRLMVMERIDGIPVSDIEALNAQGTNLKLLAERGVELFFTQVFRDNFFHADMHPGNI 293
Query: 275 FAMRDG--RIAYV--DFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGT 330
F R+ Y+ D G + L++++K+ L + + N DY +A + G+++ T
Sbjct: 294 FISREHPENPFYIGLDCGIMGSLNEEDKRYLAENFLAFFNRDYHRIAQLYVESGWVSADT 353
Query: 331 DVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEG 390
D+ A++ + + K L + +F V + + + I + + L+ ++LL EG
Sbjct: 354 DILAFEQAVKLVCEPMFNKPLNEISFGHVLLELFRTARRFDIVVQPQLVLLEKTLLYIEG 413
Query: 391 ICFTLKPDFKFLEVAYPYVAKRLLTDPNP 419
+ L P + A P++ + + P
Sbjct: 414 LGRQLYPQLDLWQTAKPFLERWMAEQVGP 442
>sp|B8CI04|UBIB_SHEPW Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
piezotolerans (strain WP3 / JCM 13877) GN=ubiB PE=3 SV=1
Length = 549
Score = 188 bits (477), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 196/383 (51%), Gaps = 12/383 (3%)
Query: 35 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 94
+L+ + LGP +IK GQ+L+ R D++ +++ EL +LQD VP F + +A IE+EL
Sbjct: 54 GERLKLAMQELGPVYIKFGQMLSTRRDLLSDEWAEELAMLQDRVPPFDSAIARESIEQEL 113
Query: 95 GRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 154
P+E F +A+AS+ QV+ ATL+ G V +KV RP +E ++ D+ L A
Sbjct: 114 NAPIETYFDDFEDTPLASASISQVHTATLKSNGAKVVLKVLRPDVEQKVHADIQLMSQAA 173
Query: 155 SFLNGISIQKLGCNAEL----IVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPR 210
+FL + LG N L +V+++ + EL+ LEA N NF D + IP
Sbjct: 174 NFLESL----LGANNRLRPAEVVEDYRTTIEGELNLKLEALNAIKLRNNFLDSNALYIPY 229
Query: 211 VYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPH 270
+Y+ L +R++VME IDG+ +D A++ G ++ GV Q+ FH D H
Sbjct: 230 MYEELCFTRLIVMERIDGVPVSDKAALEAQGTNLKLLAERGVELFFTQVFRDNFFHADMH 289
Query: 271 PGNIFAMR----DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFL 326
PGNIF R D +D G + L+ ++K+ L + + N DY +A + G++
Sbjct: 290 PGNIFVSREHPNDPFYIGLDCGIMGTLTDEDKRYLAENFLAFFNRDYRRIAQLYIESGWV 349
Query: 327 AKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLL 386
+ TD+S A++ + + K L + +F V + + + + + + L+ ++LL
Sbjct: 350 SADTDISAFEQAVKVVCEPMFNKPLDEISFGHVLLELFRTARRFDMVVQPQLVLLEKTLL 409
Query: 387 TQEGICFTLKPDFKFLEVAYPYV 409
EG+ L P + A P++
Sbjct: 410 YIEGLGRQLYPQLDLWQTAKPFL 432
>sp|A4XPM5|UBIB_PSEMY Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
mendocina (strain ymp) GN=ubiB PE=3 SV=1
Length = 527
Score = 187 bits (476), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 127/439 (28%), Positives = 215/439 (48%), Gaps = 14/439 (3%)
Query: 34 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEE 93
R +LR L +LGP FIK GQ+L+ R D++ D +EL LQD VP FP A +IE +
Sbjct: 55 RGARLRLALEDLGPIFIKFGQLLSTRRDLLPPDIADELARLQDQVPPFPEDQAIALIERQ 114
Query: 94 LGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTL 153
LG P+ +F++ SQ +A+AS+ QV+ A L+ +GE+V +KV RPG++P+I +DL L
Sbjct: 115 LGAPVSQLFARFDSQPLASASVAQVHAAQLK-SGEEVVVKVVRPGLKPVIRQDLAWLFLL 173
Query: 154 ASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYK 213
A S +V ++ + + +ELD EA N NF+ P + +P+VY
Sbjct: 174 ARIAERASADARRLRPVEVVSDYEKTIFDELDLLREAANASQLRRNFEGSPLLYVPQVYW 233
Query: 214 RLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGN 273
L +VLVME I G+ TD + D+ GV Q+ FH D HPGN
Sbjct: 234 DLCRHQVLVMERIYGVPVTDLATLADQRTDMKLLAERGVEIFFTQVFRDSFFHADMHPGN 293
Query: 274 IFAMR----DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKG 329
IF + +D G + L+ +++ L ++ DY ++A G++
Sbjct: 294 IFVSTRTPWSPQYIAIDCGIIGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPAD 353
Query: 330 TDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQE 389
T V+ A+ + + K L D +F + + + + + + + L+ ++LL E
Sbjct: 354 TKVNEFEAAIRTVCEPIFEKPLKDISFGQLLLRLFQTARRFNMEVQPQLVLLQKTLLNIE 413
Query: 390 GICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQV-LFKDNVFQWKRLENLITLAK 448
G+ L PD A P++ + +RER+ + L ++ Q +++ +L +A+
Sbjct: 414 GLGRQLYPDLDLWSTAQPFLER--------WMRERVSPLHLLRNLQQQAEQVPHLSQIAR 465
Query: 449 ENVARMSSNPALRVKDMQN 467
+ + R+ R D ++
Sbjct: 466 DALERLQRPEPPRESDARD 484
>sp|Q0HE99|UBIB_SHESM Probable ubiquinone biosynthesis protein UbiB OS=Shewanella sp.
(strain MR-4) GN=ubiB PE=3 SV=1
Length = 549
Score = 187 bits (476), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 119/398 (29%), Positives = 198/398 (49%), Gaps = 4/398 (1%)
Query: 26 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQV 85
R+K +L+ + LGP +IK GQ+L+ R D++ +++ NEL +LQD VP F +
Sbjct: 45 RNKHKGKSGGERLKLAMQELGPVYIKLGQMLSTRRDLLSDEWANELAMLQDKVPPFDGAL 104
Query: 86 AFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYR 145
A IE EL P+E+ F + +A+AS+ QV+ ATL+ G+ V +KV RP +E I
Sbjct: 105 ARQAIETELKAPIESFFDDFNETPLASASISQVHTATLKSNGKAVVLKVLRPNVEAKIQA 164
Query: 146 DLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPT 205
DL L A ++ + + +++++ +L EL+ LEA N NF D
Sbjct: 165 DLLLMSQTAKIIDYLLGEGNRLRPSEVIEDYRVTILGELNLKLEALNAIKLRNNFLDSDA 224
Query: 206 VKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLF 265
+ IP VY+ R++VME I GI +D A+K G + GV Q+ F
Sbjct: 225 LYIPYVYEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFF 284
Query: 266 HGDPHPGNIFAMRDG--RIAYV--DFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFT 321
H D HPGNIF RD Y+ D G + LS+ +K+ L + + N DY +A +
Sbjct: 285 HADMHPGNIFISRDHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYI 344
Query: 322 RLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLV 381
G++++ TD+ A++ + + K L + +F V + + ++ I + + L+
Sbjct: 345 ESGWVSEKTDLQAFEQAIKVVCEPMFNKPLDEISFGHVLLELFRTARHFDIVVQPQLVLL 404
Query: 382 IRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNP 419
++LL EG+ L P + A P++ + + P
Sbjct: 405 EKTLLYIEGLGRQLYPQLDLWQTAKPFLEQWMAEQVGP 442
>sp|A9BP42|UBIB_DELAS Probable ubiquinone biosynthesis protein UbiB OS=Delftia
acidovorans (strain DSM 14801 / SPH-1) GN=ubiB PE=3 SV=1
Length = 521
Score = 187 bits (476), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 119/393 (30%), Positives = 192/393 (48%), Gaps = 7/393 (1%)
Query: 34 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEE 93
R ++LR L LGP F+K GQVL+ R D++ D EL LQD VP F +Q+A + IE
Sbjct: 49 RGQRLREALEELGPIFVKFGQVLSTRSDLMPPDVAEELARLQDRVPPFDSQIAVDTIERA 108
Query: 94 LGRPLEAVFSKISSQTIAAASLGQVYRATLRETG---EDVAIKVQRPGIEPIIYRDLFLF 150
+ L+ +F + +A+AS+ QV+ A + + DVA+KV RPG++ +I +DL L
Sbjct: 109 FRKKLDQIFVSFEREPVASASIAQVHFAVISDRNGVQRDVAVKVLRPGMKTVIDKDLALM 168
Query: 151 RTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPR 210
+A ++ +S +V EF L +ELD EA N N + V IP
Sbjct: 169 HMMARWVERLSADGKRLKPRQVVAEFDNYLHDELDLIREASNAAQLRRNMEGLDLVLIPE 228
Query: 211 VYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPH 270
VY S V+VM+ + G+ + + ++ AG+D+ GV+ Q+ G FH D H
Sbjct: 229 VYWDFCRSDVMVMQRMTGVPISQVERLREAGVDIPKLARDGVTIFFTQVFRDGFFHADMH 288
Query: 271 PGNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFL 326
PGNI + GR +DFG V L++ +K+ L DY +A G++
Sbjct: 289 PGNIMVSLEPETFGRYISLDFGIVGTLTEYDKEYLAQNFTAFFRRDYKRVAELHIESGWV 348
Query: 327 AKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLL 386
T V + A+ A+ + + LA+ + V + + +++ I + L+ ++LL
Sbjct: 349 PPSTRVDELEAAIRAVCEPYFDRPLAEISLGMVLMRLFQTSRRFQVEIQPQLVLLQKTLL 408
Query: 387 TQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNP 419
EG+ L P+ A P++ K +L P
Sbjct: 409 NIEGLGRQLDPNLDLWSTAKPFLEKWMLDQMGP 441
>sp|B0TJ18|UBIB_SHEHH Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
halifaxensis (strain HAW-EB4) GN=ubiB PE=3 SV=1
Length = 549
Score = 187 bits (476), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 118/393 (30%), Positives = 200/393 (50%), Gaps = 12/393 (3%)
Query: 35 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 94
+L+ + LGP +IK GQ+L+ R D++ +++ EL +LQD VP F + +A IE EL
Sbjct: 54 GERLKLAMQELGPVYIKFGQMLSTRRDLLSDEWAEELAMLQDRVPPFDSAIARASIETEL 113
Query: 95 GRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 154
P+E+ F+ +A+AS+ QV+ ATL+ G V +K+ RP +E ++ DL L A
Sbjct: 114 NAPIESYFNDFDDIPLASASISQVHTATLKSNGAAVVLKILRPDVEQKVHADLLLMSQAA 173
Query: 155 SFLNGISIQKLGCNAEL----IVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPR 210
FL + LG N L +V+++ + EL+ LEA N NF D + IP
Sbjct: 174 DFLETL----LGTNNRLRPAEVVEDYRTTIEGELNLKLEALNAIKLRNNFIDSNALYIPY 229
Query: 211 VYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPH 270
+Y+ L +R++VME IDGI +D A++ G ++ GV Q+ FH D H
Sbjct: 230 MYEELCFTRLIVMERIDGIPVSDKVALEAQGTNLKLLAERGVELFFTQVFRDNFFHADMH 289
Query: 271 PGNIFAMR----DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFL 326
PGNIF R D +D G + L++++K+ L + + N DY +A + G++
Sbjct: 290 PGNIFVSREHPNDPLYIGLDCGIMGTLTEEDKRYLAENFLAFFNRDYRRIAQLYIESGWV 349
Query: 327 AKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLL 386
+ TDV+ A++ + + K L + +F V + + + + + + L+ ++LL
Sbjct: 350 SPDTDVAAFEQAVKVVCEPMFNKPLDEISFGHVLLELFRTARRFDMVVQPQLVLLEKTLL 409
Query: 387 TQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNP 419
EG+ L P + A P++ + + P
Sbjct: 410 YIEGLGRQLYPQLDLWQTAKPFLEQWMAEQVGP 442
>sp|B2JCV1|UBIB_BURP8 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phymatum (strain DSM 17167 / STM815) GN=ubiB PE=3 SV=1
Length = 527
Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 186/382 (48%), Gaps = 7/382 (1%)
Query: 37 QLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGR 96
+LR L +LGP F+K GQVL+ R D++R D EL LQD VP F + VA IIE+ LG
Sbjct: 51 RLRLALESLGPIFVKFGQVLSTRRDLLRPDIATELAKLQDQVPPFDSAVAIAIIEKSLGA 110
Query: 97 PLEAVFSKISSQTIAAASLGQVYRATLR---ETGEDVAIKVQRPGIEPIIYRDLFLFRTL 153
P++ +F +A+AS+ QV+ ATL+ G+ VA+KV RP + P+I DL L R +
Sbjct: 111 PVDTIFDDFERVPVASASIAQVHFATLKIGQHAGKQVAVKVLRPNMLPVIDSDLALLRDI 170
Query: 154 ASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYK 213
A + + +V EF + L +ELD EA N NF + +P +Y
Sbjct: 171 AVWAERLWADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMYW 230
Query: 214 RLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGN 273
+ VLVME + G+ + ++ AG+D+ GV Q+ G FH D HPGN
Sbjct: 231 EYCTANVLVMERMVGVPISQVDTLRVAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGN 290
Query: 274 IFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKG 329
I D GR +DFG + LS +K L + DY +A G++
Sbjct: 291 IQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPAT 350
Query: 330 TDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQE 389
T V + A+ A+ + + L D + V + + + I + L+ +++L E
Sbjct: 351 TRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVE 410
Query: 390 GICFTLKPDFKFLEVAYPYVAK 411
G+ +L P+ + A PY+ +
Sbjct: 411 GLGRSLDPELDLWKTAKPYLER 432
>sp|Q0HZP9|UBIB_SHESR Probable ubiquinone biosynthesis protein UbiB OS=Shewanella sp.
(strain MR-7) GN=ubiB PE=3 SV=1
Length = 549
Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 119/398 (29%), Positives = 198/398 (49%), Gaps = 4/398 (1%)
Query: 26 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQV 85
R+K +L+ + LGP +IK GQ+L+ R D++ +++ NEL +LQD VP F +
Sbjct: 45 RNKHKGKSGGERLKLAMQELGPVYIKLGQMLSTRRDLLSDEWANELAMLQDKVPPFDGAL 104
Query: 86 AFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYR 145
A IE EL P+E+ F + +A+AS+ QV+ ATL+ G+ V +KV RP +E I
Sbjct: 105 ARQAIEAELKAPIESFFDDFNETPLASASISQVHTATLKSNGKAVVLKVLRPNVEAKIQA 164
Query: 146 DLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPT 205
DL L A ++ + + +++++ +L EL+ LEA N NF D
Sbjct: 165 DLLLMSQTAKVIDYLLGEGNRLRPSEVIEDYRVTILGELNLKLEALNAIKLRNNFLDSDA 224
Query: 206 VKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLF 265
+ IP VY+ R++VME I GI +D A+K G + GV Q+ F
Sbjct: 225 LYIPYVYEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFF 284
Query: 266 HGDPHPGNIFAMRDG--RIAYV--DFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFT 321
H D HPGNIF RD Y+ D G + LS+ +K+ L + + N DY +A +
Sbjct: 285 HADMHPGNIFISRDHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYI 344
Query: 322 RLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLV 381
G++++ TD+ A++ + + K L + +F V + + ++ I + + L+
Sbjct: 345 ESGWVSEKTDLQAFEQAIKVVCEPMFNKPLDEISFGHVLLELFRTARHFDIVVQPQLVLL 404
Query: 382 IRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNP 419
++LL EG+ L P + A P++ + + P
Sbjct: 405 EKTLLYIEGLGRQLYPQLDLWQTAKPFLEQWMAEQVGP 442
>sp|B1KR05|UBIB_SHEWM Probable ubiquinone biosynthesis protein UbiB OS=Shewanella woodyi
(strain ATCC 51908 / MS32) GN=ubiB PE=3 SV=1
Length = 549
Score = 187 bits (474), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/389 (29%), Positives = 199/389 (51%), Gaps = 4/389 (1%)
Query: 35 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 94
+L+ ++ LGP +IK GQ+L+ R D++ +++ EL +LQD VP F + +A +IE EL
Sbjct: 54 GERLKLVMQELGPVYIKFGQMLSTRRDLLDDEWAEELAMLQDRVPPFDSSIAREMIELEL 113
Query: 95 GRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 154
G ++ F + +A+AS+ QV+ ATL+ G+ V +KV RP +E + DL L A
Sbjct: 114 GTSIDTYFDDFDNTPLASASISQVHTATLKSNGKAVVLKVLRPNVEAQVDADLHLMSQAA 173
Query: 155 SFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKR 214
+FL + +V+++ + EL+ LEA N NF D ++ IP +Y+
Sbjct: 174 NFLETVLGHGNRLRPAEVVEDYRTTIEGELNLKLEALNAVKLRNNFLDSGSLYIPYMYEE 233
Query: 215 LSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNI 274
L +R++VME I+GI +D A+K G ++ GV Q+ FH D HPGNI
Sbjct: 234 LCFTRLIVMERIEGIPVSDMAALKAQGTNLKVLAERGVELFFTQVFRDNFFHADMHPGNI 293
Query: 275 FAMR----DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGT 330
F R D +D G + L++++K+ L + + N DY +A + G+++ T
Sbjct: 294 FVSREHPEDPYYIGLDCGIMGTLTEEDKRYLAENFLAFFNRDYHRIAQLYIESGWVSPDT 353
Query: 331 DVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEG 390
D++ A++ + + K L + +F V + + + + + + L+ ++LL EG
Sbjct: 354 DIAAFEQAVKVVCEPMFNKPLDEISFGHVLLELFRTARRFDMVVQPQLVLLEKTLLYIEG 413
Query: 391 ICFTLKPDFKFLEVAYPYVAKRLLTDPNP 419
+ L P + A P++ K + P
Sbjct: 414 LGRQLYPQLDLWQTAKPFLEKWMSEQVGP 442
>sp|A1TTA2|UBIB_ACIAC Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax
citrulli (strain AAC00-1) GN=ubiB PE=3 SV=1
Length = 522
Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 130/437 (29%), Positives = 203/437 (46%), Gaps = 21/437 (4%)
Query: 3 RGVEIVWSLGLY-------------WSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSF 49
RG IVW + Y W L +V +++ R ++LR L LGP F
Sbjct: 6 RGATIVWVVLRYGLDELVLTSFQKPWLRLLAR-IVSFGRKLDAPRGQRLREALERLGPIF 64
Query: 50 IKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQT 109
+K GQVL+ R D++ D NEL +LQD VP F VA IE RP+ VF
Sbjct: 65 VKFGQVLSTRRDLLPPDIANELALLQDRVPPFDPDVAVATIERAFRRPVGEVFVSFERVP 124
Query: 110 IAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISIQKLG 166
+A+AS+ QV+ A +R+ +VA+KV RPG+ P+I DL L R +A ++ +S
Sbjct: 125 VASASIAQVHFAIVRDRHGVEREVAVKVLRPGMLPVIDNDLGLMRAMAGWVESLSADGKR 184
Query: 167 CNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEWI 226
+V EF L +ELD EA N N + V+IP + VLVME +
Sbjct: 185 LKPRQVVAEFDNYLHDELDLIREAANAAQLRRNMERLGLVRIPEILWDFCHPEVLVMERM 244
Query: 227 DGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRD----GRI 282
G+ + + ++ AG+D+ GV+ Q+ G FH D HPGNI + GR
Sbjct: 245 KGVPISQIERLRAAGVDIRQLARDGVTIFFTQVFRDGFFHADMHPGNIQVSLEPGSFGRY 304
Query: 283 AYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALEAI 342
+DFG V L++ +K+ L DY +A G++ T ++ + A+ A+
Sbjct: 305 ISLDFGIVGSLTEFDKEYLAQNFTAFFRRDYKRVAELHVESGWVPADTRINELESAIRAV 364
Query: 343 WQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFKFL 402
+ + L + + V + + + + I + L+ ++LL EG+ L P+
Sbjct: 365 CEPYFDRPLKEISLGMVLMRLFQTSRRFHVEIQPQLVLLQKTLLNIEGLGRQLDPELDLW 424
Query: 403 EVAYPYVAKRLLTDPNP 419
A P++ K +L P
Sbjct: 425 STAKPFLEKWMLDQMGP 441
>sp|C1DHS4|UBIB_AZOVD Probable ubiquinone biosynthesis protein UbiB OS=Azotobacter
vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1
Length = 537
Score = 186 bits (473), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 118/382 (30%), Positives = 193/382 (50%), Gaps = 5/382 (1%)
Query: 34 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEE 93
RA +LR L +LGP FIK GQ+L+ R D++ ED +EL LQD VP F Q + +IEE+
Sbjct: 56 RAVRLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELTWLQDRVPPFNPQQSVALIEEQ 115
Query: 94 LGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTL 153
LG ++ F++ S+ +A+AS+ QV+ A L+ TGE+V +KV RPG++ +I +DL
Sbjct: 116 LGARVDEAFARFDSEPLASASVAQVHAAQLK-TGEEVVVKVVRPGLKAVIRQDLAWLYLF 174
Query: 154 ASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYK 213
A S + + +V ++ + + +ELD EA N NF+ P + +P++Y
Sbjct: 175 ARLAERASTEARRLHLVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQIYW 234
Query: 214 RLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGN 273
+VLVME I G+ TD A+ G D+ GV Q+ FH D HPGN
Sbjct: 235 DWCRPKVLVMERIYGVPVTDLAALVDQGTDLKLLAERGVEIFFTQVFRDSFFHADMHPGN 294
Query: 274 IFAMR----DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKG 329
IF D + +D G V L+ Q++ L ++ DY ++A G++
Sbjct: 295 IFVSTRQPWDPQYIAIDCGIVGSLTPQDQDYLARNLLAFFKRDYRKVAQLHIDSGWVPAD 354
Query: 330 TDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQE 389
T V+ A+ + + K L D +F + + + + + + + L+ ++LL E
Sbjct: 355 TQVNEFEAAIRTVCEPIFEKPLKDISFGQLLLRLFQTARRFNMEVQPQLVLLQKTLLNIE 414
Query: 390 GICFTLKPDFKFLEVAYPYVAK 411
G+ L P+ A P++ +
Sbjct: 415 GLGRQLYPELDLWTTAKPFLER 436
>sp|A8H968|UBIB_SHEPA Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
pealeana (strain ATCC 700345 / ANG-SQ1) GN=ubiB PE=3
SV=1
Length = 549
Score = 186 bits (473), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 118/393 (30%), Positives = 198/393 (50%), Gaps = 12/393 (3%)
Query: 35 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 94
+L+ + LGP +IK GQ+L+ R D++ +++ EL +LQD VP F + +A IE+EL
Sbjct: 54 GERLKLAMQELGPVYIKFGQMLSTRRDLLSDEWAEELAMLQDRVPPFDSAIARESIEKEL 113
Query: 95 GRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 154
P+E F+ +A+AS+ QV+ ATL+ G V +KV RP +E ++ DL L A
Sbjct: 114 NAPIERYFNDFDDTPLASASISQVHTATLKSNGAAVVLKVLRPDVEKKVHADLLLMSQAA 173
Query: 155 SFLNGISIQKLGCNAEL----IVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPR 210
FL + LG N L +V+++ + EL+ LEA N NF D + IP
Sbjct: 174 DFLERL----LGANNRLRPAEVVEDYRTTIEGELNLKLEALNAIKLRNNFIDSNALYIPY 229
Query: 211 VYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPH 270
+Y+ L +R++VME IDGI +D A++ G ++ GV Q+ FH D H
Sbjct: 230 MYEELCFTRLIVMERIDGIPVSDKVALEAQGTNLKLLAERGVELFFTQVFRDNFFHADMH 289
Query: 271 PGNIFAMR----DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFL 326
PGN+F R D +D G + L+ ++K+ L + + N DY +A + G++
Sbjct: 290 PGNVFVSREHPNDPFYIGLDCGIMGTLTDEDKRYLAENFLAFFNRDYRRIAQLYIESGWV 349
Query: 327 AKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLL 386
+ TDV A++ + + K L + +F V + + + + + + L+ ++LL
Sbjct: 350 SADTDVGAFEQAVKVVCEPMFNKPLDEISFGHVLLELFRTARRFDMVVQPQLVLLEKTLL 409
Query: 387 TQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNP 419
EG+ L P + A P++ + + P
Sbjct: 410 YIEGLGRQLYPQLDLWQTAKPFLEQWMAEQVGP 442
>sp|A9KYL6|UBIB_SHEB9 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
(strain OS195) GN=ubiB PE=3 SV=1
Length = 549
Score = 186 bits (473), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 118/398 (29%), Positives = 199/398 (50%), Gaps = 4/398 (1%)
Query: 26 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQV 85
R+K +L+ + LGP +IK GQ+L+ R D++ +++ +EL +LQD VP F +
Sbjct: 45 RNKHKNKPGGERLKLAMQELGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVPPFDGAL 104
Query: 86 AFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYR 145
A IE EL P+E++F + +A+AS+ QV+ ATL+ G+DV +KV RP +E I
Sbjct: 105 ARQAIEAELKAPIESLFDDFNETPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQA 164
Query: 146 DLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPT 205
DL L A + + + +++++ +L EL+ LEA N NF D
Sbjct: 165 DLQLMSQTAKLIEYLLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAVKLRNNFLDSDA 224
Query: 206 VKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLF 265
+ +P VY+ R++VME I GI +D A+K G + GV Q+ F
Sbjct: 225 LYVPYVYEEFCYPRLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFF 284
Query: 266 HGDPHPGNIFAMRDG--RIAYV--DFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFT 321
H D HPGNIF RD Y+ D G + LS+ +K+ L + + N DY +A +
Sbjct: 285 HADMHPGNIFISRDHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYI 344
Query: 322 RLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLV 381
G++++ TD+ A++ + + K L + +F V + + ++ I + + L+
Sbjct: 345 ESGWVSEKTDLQAFEQAIKVVCEPMFNKPLDEISFGHVLLELFRTARHFDIVVQPQLVLL 404
Query: 382 IRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNP 419
++LL EG+ L P + A P++ + + P
Sbjct: 405 EKTLLYIEGLGRQLYPQLDLWQTAKPFLEQWMADQVGP 442
>sp|A6WIE7|UBIB_SHEB8 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
(strain OS185) GN=ubiB PE=3 SV=1
Length = 549
Score = 186 bits (473), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 118/398 (29%), Positives = 199/398 (50%), Gaps = 4/398 (1%)
Query: 26 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQV 85
R+K +L+ + LGP +IK GQ+L+ R D++ +++ +EL +LQD VP F +
Sbjct: 45 RNKHKNKPGGERLKLAMQELGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVPPFDGAL 104
Query: 86 AFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYR 145
A IE EL P+E++F + +A+AS+ QV+ ATL+ G+DV +KV RP +E I
Sbjct: 105 ARQAIEAELKAPIESLFDDFNETPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQA 164
Query: 146 DLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPT 205
DL L A + + + +++++ +L EL+ LEA N NF D
Sbjct: 165 DLQLMSQTAKLIEYLLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAVKLRNNFLDSDA 224
Query: 206 VKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLF 265
+ +P VY+ R++VME I GI +D A+K G + GV Q+ F
Sbjct: 225 LYVPYVYEEFCYPRLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFF 284
Query: 266 HGDPHPGNIFAMRDG--RIAYV--DFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFT 321
H D HPGNIF RD Y+ D G + LS+ +K+ L + + N DY +A +
Sbjct: 285 HADMHPGNIFISRDHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYI 344
Query: 322 RLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLV 381
G++++ TD+ A++ + + K L + +F V + + ++ I + + L+
Sbjct: 345 ESGWVSEKTDLQAFEQAIKVVCEPMFNKPLDEISFGHVLLELFRTARHFDIVVQPQLVLL 404
Query: 382 IRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNP 419
++LL EG+ L P + A P++ + + P
Sbjct: 405 EKTLLYIEGLGRQLYPQLDLWQTAKPFLEQWMADQVGP 442
>sp|A3D9F4|UBIB_SHEB5 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
(strain OS155 / ATCC BAA-1091) GN=ubiB PE=3 SV=1
Length = 549
Score = 186 bits (471), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 118/398 (29%), Positives = 199/398 (50%), Gaps = 4/398 (1%)
Query: 26 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQV 85
R+K +L+ + LGP +IK GQ+L+ R D++ +++ +EL +LQD VP F +
Sbjct: 45 RNKHKNKPGGERLKLAMQELGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVPPFDGAL 104
Query: 86 AFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYR 145
A IE EL P+E++F + +A+AS+ QV+ ATL+ G+DV +KV RP +E I
Sbjct: 105 ARQAIEAELKAPIESLFDDFNEIPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQA 164
Query: 146 DLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPT 205
DL L A + + + +++++ +L EL+ LEA N NF D
Sbjct: 165 DLQLMSQTAKLIEYLLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAVKLRNNFLDSDA 224
Query: 206 VKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLF 265
+ +P VY+ R++VME I GI +D A+K G + GV Q+ F
Sbjct: 225 LYVPYVYEEFCYPRLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFF 284
Query: 266 HGDPHPGNIFAMRDG--RIAYV--DFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFT 321
H D HPGNIF RD Y+ D G + LS+ +K+ L + + N DY +A +
Sbjct: 285 HADMHPGNIFISRDHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYI 344
Query: 322 RLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLV 381
G++++ TD+ A++ + + K L + +F V + + ++ I + + L+
Sbjct: 345 ESGWVSEKTDLQAFEQAIKVVCEPMFNKPLDEISFGHVLLELFRTARHFDIVVQPQLVLL 404
Query: 382 IRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNP 419
++LL EG+ L P + A P++ + + P
Sbjct: 405 EKTLLYIEGLGRQLYPQLDLWQTAKPFLEQWMADQVGP 442
>sp|B8E6B4|UBIB_SHEB2 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
(strain OS223) GN=ubiB PE=3 SV=1
Length = 549
Score = 186 bits (471), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 118/398 (29%), Positives = 199/398 (50%), Gaps = 4/398 (1%)
Query: 26 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQV 85
R+K +L+ + LGP +IK GQ+L+ R D++ +++ +EL +LQD VP F +
Sbjct: 45 RNKHKNKPGGERLKLAMQELGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVPPFDGAL 104
Query: 86 AFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYR 145
A IE EL P+E++F + +A+AS+ QV+ ATL+ G+DV +KV RP +E I
Sbjct: 105 ARQAIEAELKAPIESLFDDFNEIPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQA 164
Query: 146 DLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPT 205
DL L A + + + +++++ +L EL+ LEA N NF D
Sbjct: 165 DLQLMSQTAKLIEYLLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAVKLRNNFLDSDA 224
Query: 206 VKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLF 265
+ +P VY+ R++VME I GI +D A+K G + GV Q+ F
Sbjct: 225 LYVPYVYEEFCYPRLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFF 284
Query: 266 HGDPHPGNIFAMRDG--RIAYV--DFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFT 321
H D HPGNIF RD Y+ D G + LS+ +K+ L + + N DY +A +
Sbjct: 285 HADMHPGNIFISRDHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYI 344
Query: 322 RLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLV 381
G++++ TD+ A++ + + K L + +F V + + ++ I + + L+
Sbjct: 345 ESGWVSEKTDLQAFEQAIKVVCEPMFNKPLDEISFGHVLLELFRTARHFDIVVQPQLVLL 404
Query: 382 IRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNP 419
++LL EG+ L P + A P++ + + P
Sbjct: 405 EKTLLYIEGLGRQLYPQLDLWQTAKPFLEQWMADQVGP 442
>sp|A0L1M6|UBIB_SHESA Probable ubiquinone biosynthesis protein UbiB OS=Shewanella sp.
(strain ANA-3) GN=ubiB PE=3 SV=1
Length = 549
Score = 185 bits (469), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 118/398 (29%), Positives = 197/398 (49%), Gaps = 4/398 (1%)
Query: 26 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQV 85
R+K +L+ + LGP +IK GQ+L+ R D++ +++ NEL +LQD VP F +
Sbjct: 45 RNKHKGKSGGERLKLAMQELGPVYIKLGQMLSTRRDLLSDEWANELAMLQDKVPPFDGAL 104
Query: 86 AFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYR 145
A IE EL P+E+ F +A+AS+ QV+ ATL+ G+ V +KV RP +E I
Sbjct: 105 ARQAIEAELKAPIESYFDDFDETPLASASISQVHTATLKSNGKAVVLKVLRPNVETKIQA 164
Query: 146 DLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPT 205
DL L A ++ + + +++++ +L EL+ LEA N NF D
Sbjct: 165 DLLLMSQTAKVIDYLLGEGNRLRPSEVIEDYRVTILGELNLKLEALNAIKLRNNFLDSDA 224
Query: 206 VKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLF 265
+ IP VY+ R++VME I GI +D A+K G + GV Q+ F
Sbjct: 225 LYIPYVYEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFF 284
Query: 266 HGDPHPGNIFAMRDG--RIAYV--DFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFT 321
H D HPGNIF R+ Y+ D G + LS+ +K+ L + + N DY +A +
Sbjct: 285 HADMHPGNIFISREHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYI 344
Query: 322 RLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLV 381
G++++ TD+ A++ + + K L + +F V + + ++ I + + L+
Sbjct: 345 ESGWVSEKTDLQAFEQAIKVVCEPMFNKPLDEISFGHVLLELFRTARHFDIVVQPQLVLL 404
Query: 382 IRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNP 419
++LL EG+ L P + A P++ + + P
Sbjct: 405 EKTLLYIEGLGRQLYPQLDLWQTAKPFLEQWMAEQVGP 442
>sp|C5CWY2|UBIB_VARPS Probable ubiquinone biosynthesis protein UbiB OS=Variovorax
paradoxus (strain S110) GN=ubiB PE=3 SV=1
Length = 521
Score = 185 bits (469), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 129/438 (29%), Positives = 206/438 (47%), Gaps = 23/438 (5%)
Query: 3 RGVEIVWSLGLY-------------WSNLTYDCL-VGRDKEVVPDRARQLRNLLCNLGPS 48
RG+ IVW Y W + + +GR+ + R ++LR L LGP
Sbjct: 6 RGIFIVWVALRYGLDELVLTSFQKPWLRVVARIVSIGRNLDA--PRGQRLREALERLGPI 63
Query: 49 FIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQ 108
F+K GQVL+ R D++ D +EL LQD VP FP+ VA IE RP+ VF +
Sbjct: 64 FVKFGQVLSTRRDLLPPDIADELAFLQDRVPPFPSAVAIATIERAFRRPVGDVFVQFDET 123
Query: 109 TIAAASLGQVYRATLR-ETGE--DVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISIQKL 165
IA+AS+ QV+ AT+R + GE +VA+KV RP + +I +DL L +A ++ +S
Sbjct: 124 PIASASIAQVHFATIRTDEGEVREVAVKVLRPSMRGVIEKDLALMAMMAGWVEKLSPDGK 183
Query: 166 GCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEW 225
+V EF + L +ELD EA N N V IP ++ V+VME
Sbjct: 184 RLKPREVVGEFDKYLHDELDLVREAANAAQLRRNMASLELVLIPEMFWDFCHPEVIVMER 243
Query: 226 IDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRD----GR 281
++G+ ++ AG+D+ GV+ Q+ G FH D HPGNI GR
Sbjct: 244 MNGVPIAQLDRLRAAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPGNIQVSLAPETFGR 303
Query: 282 IAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALEA 341
+DFG + L++ +K+ L V DY +A G++ +GT + + A+
Sbjct: 304 YISLDFGIIGTLTESDKEYLAQNFVAFFRRDYKRVAELHLESGWVPEGTRIDELEGAIRT 363
Query: 342 IWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFKF 401
+ + + L + + V + + + + I + L+ ++LL EG+ L P+
Sbjct: 364 VCEPYFDRPLKEISLGMVLMRLFQTSRRFHVEIQPQLVLLQKTLLNIEGLGRQLDPELDL 423
Query: 402 LEVAYPYVAKRLLTDPNP 419
A P++ K ++ P
Sbjct: 424 WHTAKPFLEKWMVDQIGP 441
>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain K96243) GN=ubiB PE=3 SV=1
Length = 525
Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 193/389 (49%), Gaps = 8/389 (2%)
Query: 35 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 94
A +LR L +LGP F+K GQVL+ R D++ D+ NEL LQD VP F + VA I+E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 95 GRPLEAVFSKISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFR 151
G ++ +F + +A+AS+ QV+ A L++ G+ VA+KV RP + P+I DL L R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 152 TLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRV 211
+A++ + +V EF + L +ELD EA N NF + +P +
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 212 YKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHP 271
+ S VLVME + G+ + ++ AG+D+ GV Q+ G FH D HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 272 GNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLA 327
GNI D GR +DFG V LS +K L + DY +A G++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 328 KGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLT 387
T V + A+ A+ + + L D + V + + + I + L+ +++L
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 388 QEGICFTLKPDFKFLEVAYPYVAKRLLTD 416
EG+ +L P+ + A PY+ +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 668) GN=ubiB PE=3 SV=1
Length = 525
Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 193/389 (49%), Gaps = 8/389 (2%)
Query: 35 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 94
A +LR L +LGP F+K GQVL+ R D++ D+ NEL LQD VP F + VA I+E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 95 GRPLEAVFSKISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFR 151
G ++ +F + +A+AS+ QV+ A L++ G+ VA+KV RP + P+I DL L R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 152 TLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRV 211
+A++ + +V EF + L +ELD EA N NF + +P +
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 212 YKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHP 271
+ S VLVME + G+ + ++ AG+D+ GV Q+ G FH D HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 272 GNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLA 327
GNI D GR +DFG V LS +K L + DY +A G++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 328 KGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLT 387
T V + A+ A+ + + L D + V + + + I + L+ +++L
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 388 QEGICFTLKPDFKFLEVAYPYVAKRLLTD 416
EG+ +L P+ + A PY+ +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|Q3JVZ2|UBIB_BURP1 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1
Length = 525
Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 193/389 (49%), Gaps = 8/389 (2%)
Query: 35 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 94
A +LR L +LGP F+K GQVL+ R D++ D+ NEL LQD VP F + VA I+E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 95 GRPLEAVFSKISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFR 151
G ++ +F + +A+AS+ QV+ A L++ G+ VA+KV RP + P+I DL L R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 152 TLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRV 211
+A++ + +V EF + L +ELD EA N NF + +P +
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 212 YKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHP 271
+ S VLVME + G+ + ++ AG+D+ GV Q+ G FH D HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 272 GNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLA 327
GNI D GR +DFG V LS +K L + DY +A G++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 328 KGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLT 387
T V + A+ A+ + + L D + V + + + I + L+ +++L
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 388 QEGICFTLKPDFKFLEVAYPYVAKRLLTD 416
EG+ +L P+ + A PY+ +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|A3NRJ7|UBIB_BURP0 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1
Length = 525
Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 193/389 (49%), Gaps = 8/389 (2%)
Query: 35 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 94
A +LR L +LGP F+K GQVL+ R D++ D+ NEL LQD VP F + VA I+E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 95 GRPLEAVFSKISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFR 151
G ++ +F + +A+AS+ QV+ A L++ G+ VA+KV RP + P+I DL L R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 152 TLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRV 211
+A++ + +V EF + L +ELD EA N NF + +P +
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 212 YKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHP 271
+ S VLVME + G+ + ++ AG+D+ GV Q+ G FH D HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 272 GNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLA 327
GNI D GR +DFG V LS +K L + DY +A G++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 328 KGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLT 387
T V + A+ A+ + + L D + V + + + I + L+ +++L
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 388 QEGICFTLKPDFKFLEVAYPYVAKRLLTD 416
EG+ +L P+ + A PY+ +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|A1V750|UBIB_BURMS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain SAVP1) GN=ubiB PE=3 SV=1
Length = 525
Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 193/389 (49%), Gaps = 8/389 (2%)
Query: 35 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 94
A +LR L +LGP F+K GQVL+ R D++ D+ NEL LQD VP F + VA I+E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 95 GRPLEAVFSKISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFR 151
G ++ +F + +A+AS+ QV+ A L++ G+ VA+KV RP + P+I DL L R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 152 TLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRV 211
+A++ + +V EF + L +ELD EA N NF + +P +
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 212 YKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHP 271
+ S VLVME + G+ + ++ AG+D+ GV Q+ G FH D HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 272 GNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLA 327
GNI D GR +DFG V LS +K L + DY +A G++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 328 KGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLT 387
T V + A+ A+ + + L D + V + + + I + L+ +++L
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 388 QEGICFTLKPDFKFLEVAYPYVAKRLLTD 416
EG+ +L P+ + A PY+ +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|Q62MP2|UBIB_BURMA Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain ATCC 23344) GN=ubiB PE=3 SV=1
Length = 525
Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 193/389 (49%), Gaps = 8/389 (2%)
Query: 35 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 94
A +LR L +LGP F+K GQVL+ R D++ D+ NEL LQD VP F + VA I+E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 95 GRPLEAVFSKISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFR 151
G ++ +F + +A+AS+ QV+ A L++ G+ VA+KV RP + P+I DL L R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 152 TLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRV 211
+A++ + +V EF + L +ELD EA N NF + +P +
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 212 YKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHP 271
+ S VLVME + G+ + ++ AG+D+ GV Q+ G FH D HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 272 GNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLA 327
GNI D GR +DFG V LS +K L + DY +A G++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 328 KGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLT 387
T V + A+ A+ + + L D + V + + + I + L+ +++L
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 388 QEGICFTLKPDFKFLEVAYPYVAKRLLTD 416
EG+ +L P+ + A PY+ +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|A2S8L4|UBIB_BURM9 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10229) GN=ubiB PE=3 SV=1
Length = 525
Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 193/389 (49%), Gaps = 8/389 (2%)
Query: 35 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 94
A +LR L +LGP F+K GQVL+ R D++ D+ NEL LQD VP F + VA I+E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 95 GRPLEAVFSKISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFR 151
G ++ +F + +A+AS+ QV+ A L++ G+ VA+KV RP + P+I DL L R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 152 TLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRV 211
+A++ + +V EF + L +ELD EA N NF + +P +
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 212 YKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHP 271
+ S VLVME + G+ + ++ AG+D+ GV Q+ G FH D HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 272 GNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLA 327
GNI D GR +DFG V LS +K L + DY +A G++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 328 KGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLT 387
T V + A+ A+ + + L D + V + + + I + L+ +++L
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 388 QEGICFTLKPDFKFLEVAYPYVAKRLLTD 416
EG+ +L P+ + A PY+ +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|A3MNU1|UBIB_BURM7 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10247) GN=ubiB PE=3 SV=1
Length = 525
Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 193/389 (49%), Gaps = 8/389 (2%)
Query: 35 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 94
A +LR L +LGP F+K GQVL+ R D++ D+ NEL LQD VP F + VA I+E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 95 GRPLEAVFSKISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFR 151
G ++ +F + +A+AS+ QV+ A L++ G+ VA+KV RP + P+I DL L R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 152 TLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRV 211
+A++ + +V EF + L +ELD EA N NF + +P +
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 212 YKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHP 271
+ S VLVME + G+ + ++ AG+D+ GV Q+ G FH D HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 272 GNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLA 327
GNI D GR +DFG V LS +K L + DY +A G++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 328 KGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLT 387
T V + A+ A+ + + L D + V + + + I + L+ +++L
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 388 QEGICFTLKPDFKFLEVAYPYVAKRLLTD 416
EG+ +L P+ + A PY+ +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 206,251,070
Number of Sequences: 539616
Number of extensions: 8817528
Number of successful extensions: 25934
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 25193
Number of HSP's gapped (non-prelim): 304
length of query: 558
length of database: 191,569,459
effective HSP length: 123
effective length of query: 435
effective length of database: 125,196,691
effective search space: 54460560585
effective search space used: 54460560585
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)