Query 008647
Match_columns 558
No_of_seqs 370 out of 2807
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 14:48:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008647.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008647hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1159 NADP-dependent flavopr 100.0 1E-108 2E-113 833.6 44.7 524 3-558 48-574 (574)
2 PRK10953 cysJ sulfite reductas 100.0 3.5E-97 8E-102 812.9 59.7 491 2-558 108-600 (600)
3 TIGR01931 cysJ sulfite reducta 100.0 1.8E-95 4E-100 803.7 59.2 491 2-558 105-597 (597)
4 KOG1158 NADP/FAD dependent oxi 100.0 1.1E-96 2E-101 793.4 43.8 543 4-558 94-645 (645)
5 COG0369 CysJ Sulfite reductase 100.0 2.9E-92 6.3E-97 761.9 49.0 489 5-558 97-587 (587)
6 cd06204 CYPOR NADPH cytochrome 100.0 4.1E-79 8.9E-84 648.8 46.9 389 155-558 2-416 (416)
7 cd06207 CyPoR_like NADPH cytoc 100.0 1.7E-77 3.7E-82 631.4 44.4 379 163-558 2-382 (382)
8 cd06203 methionine_synthase_re 100.0 4.2E-77 9.1E-82 630.5 44.9 382 163-558 2-398 (398)
9 cd06202 Nitric_oxide_synthase 100.0 2.3E-76 4.9E-81 625.9 46.5 387 162-558 1-402 (406)
10 cd06206 bifunctional_CYPOR The 100.0 7.7E-75 1.7E-79 611.7 45.0 376 162-558 1-384 (384)
11 cd06199 SiR Cytochrome p450- l 100.0 2.2E-71 4.7E-76 579.9 41.0 356 162-558 1-360 (360)
12 PRK06214 sulfite reductase; Pr 100.0 1.6E-70 3.4E-75 590.2 42.5 368 151-558 161-530 (530)
13 PF00667 FAD_binding_1: FAD bi 100.0 1.4E-47 3.1E-52 373.7 21.0 218 152-375 2-219 (219)
14 PLN03115 ferredoxin--NADP(+) r 100.0 2.3E-42 5.1E-47 357.8 28.8 273 152-558 84-367 (367)
15 cd06182 CYPOR_like NADPH cytoc 100.0 4.8E-40 1E-44 330.1 30.5 217 334-558 47-267 (267)
16 TIGR03224 benzo_boxA benzoyl-C 100.0 1.3E-36 2.9E-41 321.9 32.0 269 153-558 137-411 (411)
17 PLN03116 ferredoxin--NADP+ red 100.0 1.3E-36 2.8E-41 311.5 29.8 273 154-558 20-307 (307)
18 cd06208 CYPOR_like_FNR These f 100.0 6.4E-36 1.4E-40 303.7 31.3 213 333-558 62-286 (286)
19 cd06201 SiR_like2 Cytochrome p 100.0 5.7E-36 1.2E-40 304.1 29.8 189 335-558 100-289 (289)
20 cd06200 SiR_like1 Cytochrome p 100.0 1.8E-36 3.8E-41 301.0 22.5 212 318-558 30-245 (245)
21 cd06188 NADH_quinone_reductase 100.0 3.9E-28 8.4E-33 246.5 13.6 181 335-530 86-273 (283)
22 cd06189 flavin_oxioreductase N 100.0 3.7E-28 8.1E-33 238.2 13.0 185 318-529 24-213 (224)
23 cd00322 FNR_like Ferredoxin re 99.9 8.8E-28 1.9E-32 234.8 13.2 188 319-529 22-214 (223)
24 PRK08051 fre FMN reductase; Va 99.9 7.7E-28 1.7E-32 237.3 12.3 186 318-530 28-219 (232)
25 cd06211 phenol_2-monooxygenase 99.9 1.3E-27 2.8E-32 236.6 13.2 186 319-530 35-228 (238)
26 PRK07609 CDP-6-deoxy-delta-3,4 99.9 1.2E-27 2.6E-32 249.1 13.0 184 319-529 131-321 (339)
27 PRK10926 ferredoxin-NADP reduc 99.9 2.2E-27 4.7E-32 236.2 13.9 187 319-528 30-228 (248)
28 cd06195 FNR1 Ferredoxin-NADP+ 99.9 3E-27 6.4E-32 234.4 14.4 190 319-531 24-226 (241)
29 cd06210 MMO_FAD_NAD_binding Me 99.9 2.8E-27 6.1E-32 233.8 13.4 185 319-529 34-224 (236)
30 cd06190 T4MO_e_transfer_like T 99.9 4.2E-27 9.1E-32 231.9 14.5 187 319-529 23-219 (232)
31 PRK11872 antC anthranilate dio 99.9 3.4E-27 7.4E-32 245.4 14.0 183 319-530 136-325 (340)
32 cd06187 O2ase_reductase_like T 99.9 4.3E-27 9.4E-32 230.5 13.3 185 319-530 23-214 (224)
33 PRK05464 Na(+)-translocating N 99.9 5.9E-27 1.3E-31 249.4 15.0 181 334-529 209-396 (409)
34 PRK10684 HCP oxidoreductase, N 99.9 8.1E-27 1.8E-31 242.1 15.6 187 319-530 36-227 (332)
35 PRK08345 cytochrome-c3 hydroge 99.9 5.4E-27 1.2E-31 238.5 13.9 183 319-530 37-236 (289)
36 cd06209 BenDO_FAD_NAD Benzoate 99.9 7E-27 1.5E-31 229.8 12.8 182 319-529 30-216 (228)
37 cd06212 monooxygenase_like The 99.9 8.1E-27 1.8E-31 229.9 13.2 185 319-530 29-221 (232)
38 TIGR01941 nqrF NADH:ubiquinone 99.9 2E-26 4.4E-31 245.1 16.3 181 334-529 205-392 (405)
39 cd06191 FNR_iron_sulfur_bindin 99.9 9.6E-27 2.1E-31 229.2 12.1 187 319-529 27-220 (231)
40 PRK13289 bifunctional nitric o 99.9 1.8E-26 3.8E-31 245.7 14.8 186 319-529 184-381 (399)
41 cd06194 FNR_N-term_Iron_sulfur 99.9 3.3E-26 7.1E-31 224.1 14.7 186 319-530 23-211 (222)
42 PRK05713 hypothetical protein; 99.9 1.3E-26 2.8E-31 238.4 12.2 178 319-529 118-297 (312)
43 cd06213 oxygenase_e_transfer_s 99.9 4.6E-26 1E-30 223.8 13.3 181 319-529 27-216 (227)
44 cd06221 sulfite_reductase_like 99.9 1E-25 2.2E-30 224.9 14.8 184 318-530 26-214 (253)
45 cd06215 FNR_iron_sulfur_bindin 99.9 9.1E-26 2E-30 222.2 12.4 187 319-529 27-220 (231)
46 COG1018 Hmp Flavodoxin reducta 99.9 2.5E-25 5.3E-30 221.8 15.4 183 319-531 34-221 (266)
47 PRK05723 flavodoxin; Provision 99.9 1.5E-25 3.2E-30 204.8 12.3 100 3-104 48-150 (151)
48 cd06184 flavohem_like_fad_nad_ 99.9 1.2E-25 2.7E-30 223.6 12.2 182 319-529 36-232 (247)
49 cd06216 FNR_iron_sulfur_bindin 99.9 1.5E-25 3.2E-30 222.6 12.3 185 319-531 45-235 (243)
50 cd06196 FNR_like_1 Ferredoxin 99.9 1.4E-25 3.1E-30 218.9 11.2 180 318-530 26-210 (218)
51 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 3E-25 6.5E-30 232.3 14.1 189 319-530 32-231 (352)
52 PTZ00274 cytochrome b5 reducta 99.9 2.7E-25 5.9E-30 228.1 12.5 182 319-524 81-281 (325)
53 cd06198 FNR_like_3 NAD(P) bind 99.9 3E-25 6.5E-30 216.3 12.1 178 319-530 22-205 (216)
54 cd06217 FNR_iron_sulfur_bindin 99.9 2.2E-25 4.8E-30 220.0 11.3 183 319-529 30-224 (235)
55 PRK09004 FMN-binding protein M 99.9 5.2E-25 1.1E-29 200.7 11.9 99 2-103 46-146 (146)
56 PRK08221 anaerobic sulfite red 99.9 5.7E-25 1.2E-29 220.6 13.2 178 319-530 32-216 (263)
57 cd06183 cyt_b5_reduct_like Cyt 99.9 7E-25 1.5E-29 216.1 12.7 185 318-529 27-225 (234)
58 PTZ00319 NADH-cytochrome B5 re 99.9 8E-25 1.7E-29 223.4 12.3 195 319-529 63-291 (300)
59 cd06214 PA_degradation_oxidore 99.9 1.2E-24 2.6E-29 215.6 12.8 188 319-529 32-229 (241)
60 PRK08105 flavodoxin; Provision 99.9 1.7E-24 3.8E-29 197.9 12.3 98 2-103 48-147 (149)
61 TIGR02911 sulfite_red_B sulfit 99.9 2E-24 4.4E-29 216.4 13.7 179 319-529 30-213 (261)
62 cd06218 DHOD_e_trans FAD/NAD b 99.9 3E-24 6.6E-29 213.4 14.6 174 319-530 24-204 (246)
63 cd06185 PDR_like Phthalate dio 99.9 6.3E-24 1.4E-28 206.2 13.5 175 319-530 25-200 (211)
64 COG0543 UbiB 2-polyprenylpheno 99.9 1.8E-23 4E-28 208.0 14.5 178 319-529 35-215 (252)
65 cd06197 FNR_like_2 FAD/NAD(P) 99.9 2.1E-23 4.6E-28 203.9 12.6 158 319-527 25-211 (220)
66 KOG0534 NADH-cytochrome b-5 re 99.9 6.8E-23 1.5E-27 202.9 14.5 183 319-528 81-276 (286)
67 cd06220 DHOD_e_trans_like2 FAD 99.9 5.5E-23 1.2E-27 202.8 13.3 166 319-530 23-191 (233)
68 PRK06222 ferredoxin-NADP(+) re 99.9 3.6E-23 7.8E-28 209.6 12.2 174 319-529 27-204 (281)
69 cd06219 DHOD_e_trans_like1 FAD 99.9 5.7E-23 1.2E-27 204.6 12.6 173 319-528 26-202 (248)
70 PRK00054 dihydroorotate dehydr 99.9 5.9E-23 1.3E-27 204.8 12.6 168 319-529 31-204 (250)
71 cd06192 DHOD_e_trans_like FAD/ 99.9 8E-23 1.7E-27 202.9 13.3 173 319-529 24-201 (243)
72 COG2871 NqrF Na+-transporting 99.9 1.5E-22 3.3E-27 194.0 11.6 187 334-535 210-403 (410)
73 COG4097 Predicted ferric reduc 99.9 8.9E-23 1.9E-27 202.8 9.9 177 321-531 244-426 (438)
74 PRK05802 hypothetical protein; 99.9 1.1E-22 2.4E-27 208.9 9.8 170 320-528 95-276 (320)
75 PLN02252 nitrate reductase [NA 99.9 2.4E-22 5.3E-27 229.1 13.4 196 319-529 664-879 (888)
76 PTZ00306 NADH-dependent fumara 99.8 2.6E-21 5.5E-26 229.4 12.4 186 319-530 947-1153(1167)
77 PRK12778 putative bifunctional 99.8 4.6E-20 1E-24 211.0 13.0 174 319-529 27-204 (752)
78 cd06193 siderophore_interactin 99.8 3.1E-20 6.8E-25 183.4 8.5 172 320-528 27-220 (235)
79 cd06186 NOX_Duox_like_FAD_NADP 99.8 1.9E-19 4.1E-24 174.6 11.5 164 318-527 23-197 (210)
80 PRK12779 putative bifunctional 99.8 7.4E-19 1.6E-23 203.2 15.6 184 319-529 676-870 (944)
81 PF00175 NAD_binding_1: Oxidor 99.7 3.3E-18 7.1E-23 148.0 8.3 104 412-523 1-109 (109)
82 PRK12775 putative trifunctiona 99.7 7.4E-18 1.6E-22 196.6 13.0 173 319-529 27-204 (1006)
83 PF00258 Flavodoxin_1: Flavodo 99.7 1.1E-17 2.4E-22 152.2 5.9 94 2-95 45-143 (143)
84 PLN02844 oxidoreductase/ferric 99.6 5E-15 1.1E-19 165.0 13.1 185 318-515 337-536 (722)
85 PRK07308 flavodoxin; Validated 99.6 5.3E-15 1.2E-19 135.2 11.0 94 2-100 48-143 (146)
86 PLN02292 ferric-chelate reduct 99.6 6.8E-15 1.5E-19 163.5 13.1 179 318-514 350-546 (702)
87 PLN02631 ferric-chelate reduct 99.6 3.8E-15 8.2E-20 165.2 10.2 150 317-482 332-492 (699)
88 PRK12359 flavodoxin FldB; Prov 99.5 8E-14 1.7E-18 129.9 12.2 99 2-105 45-170 (172)
89 KOG3378 Globins and related he 99.5 7.7E-15 1.7E-19 140.3 2.9 182 315-531 176-371 (385)
90 KOG1160 Fe-S oxidoreductase [E 99.5 8.7E-14 1.9E-18 140.9 10.0 97 4-105 93-194 (601)
91 PRK06703 flavodoxin; Provision 99.5 2.2E-13 4.8E-18 125.1 11.6 99 2-105 48-149 (151)
92 TIGR01752 flav_long flavodoxin 99.3 1.5E-11 3.3E-16 114.9 11.2 73 2-79 44-118 (167)
93 PRK09271 flavodoxin; Provision 99.3 2.6E-11 5.6E-16 112.5 10.2 92 2-103 51-147 (160)
94 TIGR01753 flav_short flavodoxi 99.2 3.9E-11 8.5E-16 108.4 10.4 91 2-98 45-138 (140)
95 COG0716 FldA Flavodoxins [Ener 99.2 4.5E-11 9.8E-16 109.8 10.7 96 2-102 48-150 (151)
96 PRK06756 flavodoxin; Provision 99.2 8E-11 1.7E-15 107.8 11.0 94 2-101 49-145 (148)
97 TIGR01754 flav_RNR ribonucleot 99.2 5E-11 1.1E-15 108.1 9.2 85 2-99 50-139 (140)
98 TIGR00333 nrdI ribonucleoside- 99.1 2.4E-10 5.1E-15 100.5 7.3 58 2-70 35-93 (125)
99 PRK09267 flavodoxin FldA; Vali 99.0 2.9E-09 6.2E-14 99.7 11.7 96 2-102 46-166 (169)
100 PF08030 NAD_binding_6: Ferric 98.9 4.5E-09 9.8E-14 96.8 7.3 74 409-482 3-79 (156)
101 KOG0039 Ferric reductase, NADH 98.8 3.1E-08 6.7E-13 111.0 11.7 196 320-530 382-633 (646)
102 PRK06567 putative bifunctional 98.7 3.2E-08 7E-13 112.9 9.8 95 307-421 804-907 (1028)
103 PRK03600 nrdI ribonucleotide r 98.6 7.3E-08 1.6E-12 86.2 7.4 85 3-101 39-130 (134)
104 PF00970 FAD_binding_6: Oxidor 98.5 4.4E-08 9.5E-13 83.1 1.6 68 318-401 28-98 (99)
105 PRK02551 flavoprotein NrdI; Pr 98.3 1.5E-06 3.3E-11 79.2 7.2 60 4-68 55-122 (154)
106 PRK11921 metallo-beta-lactamas 98.1 9.5E-06 2.1E-10 86.4 8.3 91 2-102 300-392 (394)
107 PRK05452 anaerobic nitric oxid 97.7 0.00012 2.7E-09 79.7 8.6 92 2-104 304-397 (479)
108 PRK05569 flavodoxin; Provision 97.4 0.00073 1.6E-08 61.0 8.6 69 2-78 48-117 (141)
109 PRK05568 flavodoxin; Provision 97.4 0.00079 1.7E-08 60.8 8.7 88 2-99 48-139 (142)
110 PF07972 Flavodoxin_NdrI: NrdI 97.3 0.00031 6.8E-09 61.5 4.6 57 4-68 39-100 (122)
111 PRK06242 flavodoxin; Provision 97.1 0.002 4.4E-08 58.7 8.1 66 2-78 43-108 (150)
112 COG1780 NrdI Protein involved 97.0 0.0028 6.1E-08 55.7 7.6 86 5-102 42-132 (141)
113 COG2375 ViuB Siderophore-inter 96.9 0.011 2.4E-07 58.5 11.6 171 333-546 85-259 (265)
114 PRK07116 flavodoxin; Provision 95.2 0.069 1.5E-06 49.4 7.5 82 2-99 76-158 (160)
115 TIGR01755 flav_wrbA NAD(P)H:qu 94.9 0.11 2.5E-06 49.7 8.2 73 2-76 68-140 (197)
116 PF08022 FAD_binding_8: FAD-bi 94.3 0.0068 1.5E-07 51.9 -1.6 79 307-398 15-102 (105)
117 PRK03767 NAD(P)H:quinone oxido 94.2 0.2 4.3E-06 48.1 8.2 73 2-76 69-141 (200)
118 KOG0560 Sulfite reductase (fer 93.8 0.026 5.6E-07 59.4 1.2 61 46-106 1-69 (638)
119 PF08021 FAD_binding_9: Sidero 91.4 0.12 2.6E-06 45.1 2.1 53 333-400 65-117 (117)
120 TIGR03567 FMN_reduc_SsuE FMN r 91.1 1.1 2.4E-05 41.8 8.4 68 2-76 65-132 (171)
121 PF03358 FMN_red: NADPH-depend 90.6 0.92 2E-05 41.1 7.2 72 2-77 70-141 (152)
122 PRK11104 hemG protoporphyrinog 90.5 0.32 7E-06 45.7 4.2 42 2-50 46-87 (177)
123 PRK10569 NAD(P)H-dependent FMN 90.1 2.4 5.2E-05 40.4 9.8 68 2-76 66-133 (191)
124 PF12682 Flavodoxin_4: Flavodo 89.3 1.6 3.5E-05 40.1 7.7 83 2-99 73-156 (156)
125 TIGR03566 FMN_reduc_MsuE FMN r 86.9 3.6 7.8E-05 38.4 8.6 68 2-76 68-135 (174)
126 PF12724 Flavodoxin_5: Flavodo 85.1 5 0.00011 36.1 8.4 44 2-52 43-86 (143)
127 PF12641 Flavodoxin_3: Flavodo 78.6 7.5 0.00016 35.9 7.0 56 2-70 39-98 (160)
128 PRK00170 azoreductase; Reviewe 77.4 18 0.00038 34.3 9.6 73 3-76 87-169 (201)
129 PRK13556 azoreductase; Provisi 76.7 23 0.00049 34.0 10.2 73 3-76 90-175 (208)
130 PF02525 Flavodoxin_2: Flavodo 76.6 27 0.00058 33.1 10.6 100 3-103 79-199 (199)
131 KOG1160 Fe-S oxidoreductase [E 75.4 3 6.5E-05 44.0 3.7 76 4-79 408-488 (601)
132 PRK09739 hypothetical protein; 72.4 29 0.00064 32.9 9.7 103 2-105 79-196 (199)
133 PRK06934 flavodoxin; Provision 70.0 23 0.00051 34.5 8.3 83 2-99 129-217 (221)
134 PRK01355 azoreductase; Reviewe 61.4 65 0.0014 30.6 9.6 102 3-105 78-194 (199)
135 PF00970 FAD_binding_6: Oxidor 61.0 25 0.00055 28.9 6.0 38 161-203 2-41 (99)
136 TIGR02667 moaB_proteo molybden 60.7 9.8 0.00021 35.2 3.6 57 39-95 2-58 (163)
137 TIGR02690 resist_ArsH arsenica 54.4 52 0.0011 32.0 7.6 71 3-76 91-161 (219)
138 PRK04930 glutathione-regulated 53.4 2E+02 0.0044 27.1 11.3 104 2-106 61-178 (184)
139 COG0655 WrbA Multimeric flavod 50.5 41 0.00088 32.2 6.2 73 2-76 75-148 (207)
140 cd06212 monooxygenase_like The 50.3 34 0.00073 33.1 5.7 41 159-204 1-42 (232)
141 cd06200 SiR_like1 Cytochrome p 46.8 38 0.00082 33.4 5.5 36 169-204 8-44 (245)
142 cd00758 MoCF_BD MoCF_BD: molyb 45.7 19 0.00042 31.8 2.9 53 43-95 1-55 (133)
143 PRK13555 azoreductase; Provisi 44.9 2.1E+02 0.0046 27.5 10.2 73 3-76 90-175 (208)
144 cd06217 FNR_iron_sulfur_bindin 43.5 52 0.0011 31.8 5.9 40 160-204 3-43 (235)
145 TIGR00106 uncharacterized prot 43.1 53 0.0011 27.6 5.0 53 41-93 32-87 (97)
146 cd06196 FNR_like_1 Ferredoxin 42.8 48 0.001 31.7 5.4 40 160-205 2-41 (218)
147 cd06214 PA_degradation_oxidore 38.9 46 0.001 32.3 4.7 40 159-203 2-44 (241)
148 cd06209 BenDO_FAD_NAD Benzoate 38.2 76 0.0016 30.5 6.1 41 159-204 2-43 (228)
149 PRK00054 dihydroorotate dehydr 38.1 78 0.0017 31.2 6.2 42 158-205 4-45 (250)
150 COG0431 Predicted flavoprotein 37.5 92 0.002 29.3 6.3 69 2-77 67-135 (184)
151 cd06211 phenol_2-monooxygenase 37.4 78 0.0017 30.8 6.1 42 158-204 6-48 (238)
152 COG0426 FpaA Uncharacterized f 36.7 1.2E+02 0.0025 32.2 7.4 67 2-79 297-364 (388)
153 cd06184 flavohem_like_fad_nad_ 35.5 1.1E+02 0.0024 29.7 6.9 42 159-205 7-50 (247)
154 cd00886 MogA_MoaB MogA_MoaB fa 35.4 41 0.00089 30.5 3.4 54 42-95 1-56 (152)
155 PRK10684 HCP oxidoreductase, N 34.5 90 0.002 32.2 6.3 45 155-205 6-50 (332)
156 TIGR00177 molyb_syn molybdenum 33.7 34 0.00075 30.7 2.6 53 43-95 2-63 (144)
157 cd06213 oxygenase_e_transfer_s 32.1 1E+02 0.0022 29.7 5.8 39 160-204 2-40 (227)
158 COG3937 Uncharacterized conser 31.9 61 0.0013 27.6 3.5 37 516-552 20-56 (108)
159 PF11132 SplA: Transcriptional 31.9 37 0.0008 26.7 2.1 17 190-206 4-20 (75)
160 cd06216 FNR_iron_sulfur_bindin 31.5 1.1E+02 0.0023 29.9 6.0 40 159-203 18-57 (243)
161 PF04703 FaeA: FaeA-like prote 31.1 1.2E+02 0.0026 23.3 4.7 26 530-555 22-47 (62)
162 cd05211 NAD_bind_Glu_Leu_Phe_V 30.7 85 0.0018 30.5 5.0 30 39-76 21-50 (217)
163 PF04954 SIP: Siderophore-inte 28.7 1.6E+02 0.0035 25.3 6.0 97 409-527 3-101 (119)
164 cd06189 flavin_oxioreductase N 28.7 99 0.0021 29.7 5.1 38 161-204 1-38 (224)
165 KOG1518 Coproporphyrinogen III 28.6 2.6E+02 0.0056 28.2 7.7 122 406-555 199-323 (382)
166 PRK00871 glutathione-regulated 28.2 4.2E+02 0.0091 24.8 9.0 102 2-104 55-168 (176)
167 PRK08051 fre FMN reductase; Va 28.2 1.3E+02 0.0028 29.2 5.8 38 159-202 3-40 (232)
168 KOG3135 1,4-benzoquinone reduc 27.4 47 0.001 30.7 2.3 74 2-83 69-147 (203)
169 PF03445 DUF294: Putative nucl 27.0 1.8E+02 0.0039 25.9 6.1 59 41-103 47-132 (138)
170 PRK07609 CDP-6-deoxy-delta-3,4 26.7 1.3E+02 0.0029 31.0 5.9 42 158-204 102-144 (339)
171 KOG4530 Predicted flavoprotein 25.7 45 0.00097 30.6 1.8 50 3-54 87-136 (199)
172 cd01075 NAD_bind_Leu_Phe_Val_D 25.2 1E+02 0.0022 29.4 4.4 31 38-76 25-55 (200)
173 cd06210 MMO_FAD_NAD_binding Me 24.6 1.7E+02 0.0037 28.2 6.0 40 160-204 3-47 (236)
174 COG2072 TrkA Predicted flavopr 24.3 1E+02 0.0023 33.3 4.8 64 3-74 133-200 (443)
175 cd06215 FNR_iron_sulfur_bindin 23.8 1.6E+02 0.0035 28.1 5.7 37 162-203 2-39 (231)
176 PF02789 Peptidase_M17_N: Cyto 23.8 1.6E+02 0.0034 25.2 5.0 37 41-77 52-91 (126)
177 COG4071 Uncharacterized protei 23.0 1.7E+02 0.0037 28.2 5.2 115 190-316 127-252 (278)
178 PRK10926 ferredoxin-NADP reduc 22.8 1.1E+02 0.0025 30.0 4.4 39 158-203 4-42 (248)
179 PF01910 DUF77: Domain of unkn 22.8 1.2E+02 0.0025 25.2 3.7 52 40-91 29-83 (92)
180 PF02826 2-Hacid_dh_C: D-isome 22.7 1.1E+02 0.0025 28.3 4.1 32 37-76 32-63 (178)
181 PRK06928 pyrroline-5-carboxyla 22.1 1.4E+02 0.003 30.0 4.9 42 507-548 168-209 (277)
182 PRK05464 Na(+)-translocating N 22.0 1.1E+02 0.0024 32.7 4.4 41 159-204 134-175 (409)
183 cd06218 DHOD_e_trans FAD/NAD b 21.8 1.1E+02 0.0024 30.0 4.1 28 177-204 10-37 (246)
184 smart00852 MoCF_biosynth Proba 20.7 64 0.0014 28.5 1.9 51 46-96 2-55 (135)
185 cd06187 O2ase_reductase_like T 20.7 1.5E+02 0.0033 28.2 4.7 28 177-205 10-37 (224)
186 cd06191 FNR_iron_sulfur_bindin 20.6 1.9E+02 0.0042 27.7 5.5 38 162-204 2-40 (231)
187 PRK04148 hypothetical protein; 20.3 2E+02 0.0043 25.7 4.8 39 23-73 2-40 (134)
188 PRK12446 undecaprenyldiphospho 20.2 1.2E+02 0.0027 31.6 4.2 24 408-431 2-27 (352)
No 1
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=100.00 E-value=1e-108 Score=833.63 Aligned_cols=524 Identities=31% Similarity=0.546 Sum_probs=457.9
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCccc
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLG 82 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~~ 82 (558)
..+|||||||||+|++|+||+.||++|.+.+.++..|++++|||||||||+|++||.++|+|++||.+|||+.++++|+|
T Consensus 48 ~~~vvFVcSTTGqGe~P~Nmk~~WrfL~rknLps~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~qLGA~~~~~~glg 127 (574)
T KOG1159|consen 48 ERLVVFVCSTTGQGEEPDNMKKFWRFLLRKNLPSTILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLRQLGANSVCPRGLG 127 (574)
T ss_pred CceEEEEEecCCCCCCCccHHHHHHHHhhccchHHHHhhhhheeeecCcccchhhhHHHHHHHHHHHHhCcccccccccc
Confidence 46899999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred CCCC--CchhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCceEEEEcCCcccccCCCCCCCCCCCCCCCCCCcee
Q 008647 83 DDDQ--CIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCR 160 (558)
Q Consensus 83 d~~~--~~~~~~~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (558)
||++ ++++.|.+|...+|..|....+....... ..|......+|++..+..+... ...+.....+.-..
T Consensus 128 DdQh~~G~eg~~~pW~~~lw~~L~~i~~p~~~~t~-l~~~~~~~~k~~~l~~~~~~~~--------~d~~~v~~~~~~~~ 198 (574)
T KOG1159|consen 128 DDQHEEGIEGVFDPWLKELWSYLKGIYPPYRPETD-LIPTVQITTKYSLLELGKASDF--------SDSDIVLEPQGQIP 198 (574)
T ss_pred cccccccchhhhHHHHHHHHHHHHhhcCCCCCccc-CCCcccccchhhhhhccccccC--------Ccchhhhccccccc
Confidence 9999 89999999999999999998872111000 0111122333333322211100 00001111111123
Q ss_pred EEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCC
Q 008647 161 VNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSL 240 (558)
Q Consensus 161 ~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~ 240 (558)
++++.|+++|+.+|+++|+|++|+++++...|+|||++.|+|.|+++.|++|++.+||++++...+.+.+.... ..
T Consensus 199 ~k~~~N~rlT~~~HfQDVR~~~F~i~~s~~~~epGDvl~l~P~N~de~V~~Fie~~gl~~~~~~~l~~~s~~~~----~~ 274 (574)
T KOG1159|consen 199 AKLVENRRLTSADHFQDVRLFEFDIPDSYEEFEPGDVLSLLPSNSDETVQRFIEYLGLDEDQLKPLKISSNDRS----SP 274 (574)
T ss_pred cchhcceeecCcchhheeeEEEEecCCccccccCCCEEEEecCCchHHHHHHHHHcCCChhhccccccccCccc----cc
Confidence 89999999999999999999999999988999999999999999999999999999999986655555443221 11
Q ss_pred CCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHHHhCCCCCC
Q 008647 241 TPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATP 320 (558)
Q Consensus 241 ~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~ 320 (558)
.+-+|.|+|+++++++|+||++.|+++||..|++|++|++||++|++++|++|.++|++|+.+++||++|+|++|+++++
T Consensus 275 ~~~~~~p~sl~~~lk~~~D~~SvPrrsFFe~l~~~s~~~~EkEkL~efas~qg~ddl~dY~nRpRRtilEvLeDF~sv~l 354 (574)
T KOG1159|consen 275 LPLLPNPLSLLNLLKYVLDFNSVPRRSFFEMLAHFSTDEMEKEKLQEFASAQGIDDLYDYVNRPRRTILEVLEDFRSVKL 354 (574)
T ss_pred ccccCCchhHHHHHHHhcccccCcchHHHHHHHHHccChHHHHHHHHhccccchHHHHHHhcchhhhHHHHHHhchhccC
Confidence 22588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCCCC
Q 008647 321 PIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNF 400 (558)
Q Consensus 321 ~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F 400 (558)
|++++++++ |.++||+|||||+|..+ .++|+|++|+|++...+.|.|+||+||++|++| +.|.+.+..|++
T Consensus 355 p~~yl~d~~-P~IrPR~fSIas~~~~~--~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g------~~i~~~v~~g~l 425 (574)
T KOG1159|consen 355 PIDYLLDLL-PVIRPRAFSIASSPGAH--HLELLVAIVEYKTILKEPRRGLCSNWLASLKPG------DEIPIKVRPGTL 425 (574)
T ss_pred CHHHHHHhc-cccccceeeeccCCCCC--ceeEEEEEEEEeeeccccccchhHHHHhhcCCC------CeEEEEEecCcc
Confidence 999999999 99999999999999864 499999999999999999999999999999999 899999999999
Q ss_pred cCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecC
Q 008647 401 KLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSRE 480 (558)
Q Consensus 401 ~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~ 480 (558)
.+|.+.+.|+||||+|||||||||+++++..+ ...+..||||||+++.||+|.+||.++.+.+ ++.|||||
T Consensus 426 ~~p~~~~~PlImVGPGTGvAPfRa~i~er~~q-----~~~~~~lFfGCR~K~~Df~y~~eW~~~~~~~----~~~AFSRD 496 (574)
T KOG1159|consen 426 YFPSDLNKPLIMVGPGTGVAPFRALIQERIYQ-----GDKENVLFFGCRNKDKDFLYEDEWTELNKRA----FHTAFSRD 496 (574)
T ss_pred ccCCCCCCCeEEEcCCCCcccHHHHHHHHHhh-----ccCCceEEEecccCCccccccchhhhhhcch----hhhhcccc
Confidence 99988899999999999999999999999872 2355699999999999999999999887654 45599999
Q ss_pred CCCccchhhhhHhcHHHHHHhhh-CCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 481 GSQKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 481 ~~~k~yvq~~l~~~~~~l~~~~~-~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
++.|.||||.|+++.+.+|+++. .++.|||||++..|..+|.++|.+|+.+.++.+.|.|. |++.|+|.+||+.|+|
T Consensus 497 qe~kvYVQh~i~e~g~~v~~Ll~~~gA~~fvaGsS~~MP~~V~~al~eI~~~e~g~~~e~a~-~l~~lekt~ryq~ETW 574 (574)
T KOG1159|consen 497 QEQKVYVQHKIRENGEEVWDLLDNLGAYFFVAGSSGKMPKDVKEALIEIVGKEGGFSKEVAS-YLKALEKTRRYQQETW 574 (574)
T ss_pred cccceeHHHHHHHhhHHHHHHHhccCCEEEEecCCCCCcHHHHHHHHHHhhhhcCCChHHHH-HHHHHHHhccccccCC
Confidence 99999999999999999999886 79999999998899999999999999999999777666 9999999999999999
No 2
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=100.00 E-value=3.5e-97 Score=812.85 Aligned_cols=491 Identities=29% Similarity=0.503 Sum_probs=430.4
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.++.+||||||||+|+|||||+.||+||..... ..|++++|||||||||+|++||+++|++|++|+++||+++++++.
T Consensus 108 ~~~~vl~v~ST~G~Ge~Pdna~~F~~~L~~~~~--~~L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~lGA~rl~~~~d 185 (600)
T PRK10953 108 QEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKA--PKLENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGAERLLDRVD 185 (600)
T ss_pred cCCeEEEEECCCCCCCCChhHHHHHHHHhhCcC--cCCCCCEEEEEccCccCHHHHHHHHHHHHHHHHHCCCeEeecccc
Confidence 467899999999999999999999999976432 239999999999999999999999999999999999999999998
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCceEEEEcCCcccccCCCCCCCCCCCCCCCCCCceeE
Q 008647 82 GDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRV 161 (558)
Q Consensus 82 ~d~~~~~~~~~~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (558)
+|.+ ++++|++|++++|++|.+........ +. .. .. . . . . .....+++..+|+.+
T Consensus 186 ~D~~--~e~~~~~W~~~~~~~l~~~~~~~~~~-----~~----~~--~~--~-~--~-~------~~~~~~~~~~~p~~a 240 (600)
T PRK10953 186 ADVE--YQAAASEWRARVVDALKSRAPAVAAP-----SQ----SV--AT--G-A--V-N------EIHTSPYSKEAPLTA 240 (600)
T ss_pred cccc--cHHHHHHHHHHHHHHHHhhcCCcccc-----cc----cc--cc--c-c--c-c------ccccCCCCCCCCeEE
Confidence 7754 89999999999999998765421100 00 00 00 0 0 0 0 001135677889999
Q ss_pred EEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCCC
Q 008647 162 NVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLT 241 (558)
Q Consensus 162 ~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (558)
+|+.|++||.++++|+|+||+|++++++++|+|||+|+|+|+|+++.|+++|++||+++++.|.+..
T Consensus 241 ~v~~n~~Lt~~~~~k~~rhie~dl~~~~l~Y~~GD~lgV~P~N~~~~V~~~l~~l~l~~~~~v~~~~------------- 307 (600)
T PRK10953 241 SLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDG------------- 307 (600)
T ss_pred EEEEEeecCCCCCCceEEEEEEecCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEeCC-------------
Confidence 9999999999999999999999998888999999999999999999999999999999988876531
Q ss_pred CCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHHHhCCCCCCC
Q 008647 242 PPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPP 321 (558)
Q Consensus 242 ~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~~ 321 (558)
.++|++++|++|+||+. |++.+|+.++.++.++. |+++. ++++.+.+|.. +++++|||.+|| ++++
T Consensus 308 ----~~~tl~~~l~~~~dl~~-~~~~~l~~~a~~~~~~~----l~~~~--~~~~~~~~~~~--~~~~~dvL~~f~-~~~~ 373 (600)
T PRK10953 308 ----KTLPLAEALQWHFELTV-NTANIVENYATLTRSET----LLPLV--GDKAALQHYAA--TTPIVDMVRFAP-AQLD 373 (600)
T ss_pred ----CCCCHHHHHHHhcccCC-CcHHHHHHHHHhCCCHH----HHHHh--cCHHHHHHHhc--CCCHHHHHHhCC-CCCC
Confidence 26799999999999998 48899999999998754 33443 35566777765 689999999997 6899
Q ss_pred hhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEeeCC-C
Q 008647 322 IGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPS-N 399 (558)
Q Consensus 322 ~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~p~g-~ 399 (558)
++||++++ |+++||+|||||+|..++++++|+|+++.|.. .|+.+.|+||+||.+ +++| +.|.|.+|.| .
T Consensus 374 ~~q~l~ll-~~l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~-~g~~~~G~~S~~L~~~l~~G------d~v~v~~~~~~~ 445 (600)
T PRK10953 374 AEQLIGLL-RPLTPRLYSIASSQAEVENEVHITVGVVRYDI-EGRARAGGASSFLADRLEEE------GEVRVFIEHNDN 445 (600)
T ss_pred HHHHHHhC-CCCCCeeeecccCCCCCCCeEEEEEEEEEeec-CCCCcCceEhhhhhhcCCCC------CEEEEEeccCCc
Confidence 99999999 99999999999999777899999999998875 577889999999996 8999 8999999876 8
Q ss_pred CcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEec
Q 008647 400 FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSR 479 (558)
Q Consensus 400 F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr 479 (558)
|++|.++.+|+||||+||||||||||++++.. .+ ..+++|||||||+...|++|++||++|.+++.+++++++|||
T Consensus 446 F~lp~~~~~piImIg~GTGIAPfrsflq~r~~---~~-~~~~~~LffG~R~~~~D~lY~~El~~~~~~g~l~~l~~afSR 521 (600)
T PRK10953 446 FRLPANPETPVIMIGPGTGIAPFRAFMQQRAA---DG-APGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLAWSR 521 (600)
T ss_pred ccCCCCCCCCEEEEecCcCcHHHHHHHHHHHH---cC-CCCCeEEEeeccCCccchhHHHHHHHHHHcCCcceEEEEECC
Confidence 99998888999999999999999999999876 22 457999999999966699999999999999999999999999
Q ss_pred CCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 480 EGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 480 ~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
++..|+||||+|.++.+++++++.++++|||||+++.|+++|+++|.+|+.+++++++++|++|+++|+++|||++|||
T Consensus 522 d~~~k~YVQ~~l~e~~~~l~~~l~~ga~~YVCG~~~~M~~~V~~~L~~i~~~~g~~~~e~A~~~l~~l~~~~RY~~Dvy 600 (600)
T PRK10953 522 DQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 600 (600)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHCCcEEEEECCCccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 9888999999999999999999988999999999768999999999999999999999999999999999999999999
No 3
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=100.00 E-value=1.8e-95 Score=803.74 Aligned_cols=491 Identities=32% Similarity=0.579 Sum_probs=431.1
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
+++.+||||||||+|+||+||..||+||..... ..|++++|||||||||+|++||++++++|++|+++||+++++++.
T Consensus 105 ~~~~li~v~ST~GeGe~Pdna~~F~~~L~~~~~--~~L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~lGa~ri~~~~~ 182 (597)
T TIGR01931 105 KERLLLLVISTQGEGEPPEEAISFHKFLHSKKA--PKLENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGGKRLLPRVD 182 (597)
T ss_pred cCceEEEEeCCCCCCcCCHHHHHHHHHHHhCCC--cccCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHHcCCeEeecccc
Confidence 467899999999999999999999999987532 239999999999999999999999999999999999999999998
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCceEEEEcCCcccccCCCCCCCCCCCCCCCCCCceeE
Q 008647 82 GDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRV 161 (558)
Q Consensus 82 ~d~~~~~~~~~~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (558)
+|.+ ++..|++|++++|++|.+.+..... . +.+.+.... . .....+++..+||.+
T Consensus 183 ~D~~--~e~~~~~W~~~~~~~l~~~~~~~~~-----~------~~~~~~~~~-------~-----~~~~~~~~~~~p~~a 237 (597)
T TIGR01931 183 ADLD--YDANAAEWRAGVLTALNEQAKGSAS-----T------PSLSETPAR-------S-----QTATSVYSKQNPFRA 237 (597)
T ss_pred CccC--hHHHHHHHHHHHHHHHHhhccCccC-----C------Ccceecccc-------c-----ccccCCccCCCCeEE
Confidence 8864 8899999999999999876532110 0 111110000 0 011234667889999
Q ss_pred EEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCCC
Q 008647 162 NVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLT 241 (558)
Q Consensus 162 ~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (558)
+|++|++||..+++++|+||+|++++++++|+|||+|+|+|+|+++.|+++|++||++++..+++.
T Consensus 238 ~v~~n~~lt~~~~~k~~~hiel~l~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~~~~v~~~-------------- 303 (597)
T TIGR01931 238 EVLENQKITGRNSKKDVRHIEIDLEGSGLHYEPGDALGVWYKNDPALVKEILKLLNLDPDEKVTIG-------------- 303 (597)
T ss_pred EEEeeEecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEeCCCHHHHHHHHHHhCCCCCCeEEeC--------------
Confidence 999999999999999999999999988999999999999999999999999999999998887653
Q ss_pred CCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHHHhCCCCCCC
Q 008647 242 PPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPP 321 (558)
Q Consensus 242 ~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~~ 321 (558)
+.++|++++|++|+||+. +++.||+.||++++|+..++.| ++++.+.+|+. +++++|||.+|| ++++
T Consensus 304 ---~~~~tl~~~l~~~~dl~~-~~~~~l~~la~~~~~~~l~~~~------~~~~~~~~y~~--~~~~~dvl~~fp-~~~~ 370 (597)
T TIGR01931 304 ---GKTIPLFEALITHFELTQ-NTKPLLKAYAELTGNKELKALI------ADNEKLKAYIQ--NTPLIDLIRDYP-ADLD 370 (597)
T ss_pred ---CCCcCHHHHHHhceeCCC-CCHHHHHHHHHhcCCHHHHHHh------cCHHHHHHHHc--CCCHHHHHHHCC-CCCC
Confidence 126799999999999998 6899999999999998655433 25677888886 689999999999 8999
Q ss_pred hhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEeeCC-C
Q 008647 322 IGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPS-N 399 (558)
Q Consensus 322 ~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~p~g-~ 399 (558)
+|||++++ |++.||+|||||+|..++++++|+|+++.|.. .++.+.|.||+||++ +++| +.|.+.++.| .
T Consensus 371 ~gq~v~ll-~~~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~-~~~~~~G~~S~~L~~~l~~G------d~v~v~~~~~~~ 442 (597)
T TIGR01931 371 AEQLISLL-RPLTPRLYSISSSQSEVGDEVHLTVGVVRYQA-HGRARLGGASGFLAERLKEG------DTVPVYIEPNDN 442 (597)
T ss_pred HHHHHHhC-cccCCceeeeccCcccCCCEEEEEEEEEEecC-CCCccccchhHHHHhhCCCC------CEEEEEEeeCCc
Confidence 99999999 99999999999999766889999999998864 677889999999998 9999 8999998765 8
Q ss_pred CcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEec
Q 008647 400 FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSR 479 (558)
Q Consensus 400 F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr 479 (558)
|++|.++.+|+||||+||||||||||++++.. .+ ..++++||||||+...|++|++||++|.+.+.+++++++|||
T Consensus 443 F~lp~~~~~piImIg~GTGIAPfrsflq~r~~---~~-~~g~~~LffG~R~~~~D~ly~~El~~~~~~~~l~~l~~afSR 518 (597)
T TIGR01931 443 FRLPEDPDTPIIMIGPGTGVAPFRAFMQERAE---DG-AKGKNWLFFGNPHFTTDFLYQVEWQNYLKKGVLTKMDLAFSR 518 (597)
T ss_pred ccCCCCCCCCEEEEcCCcCchhHHHHHHHHHH---cc-CCCCEEEEECCCCCCcchhHHHHHHHHHHcCCCceeEEEEec
Confidence 99998778899999999999999999999876 22 457899999999954599999999999999999889999999
Q ss_pred CCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 480 EGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 480 ~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
++..++|||++|.++.+.+++++..+++|||||+++.|+++|.++|.+++++++++++++|++|+++|+++|||++|||
T Consensus 519 d~~~k~yVqd~l~e~~~~~~~~l~~~a~vYvCG~~~~M~~~V~~~L~~i~~~~g~~s~~~A~~~l~~l~~~~RY~~DVy 597 (597)
T TIGR01931 519 DQAEKIYVQHRIREQGAELWQWLQEGAHIYVCGDAKKMAKDVHQALLDIIAKEGHLDAEEAEEYLTDLRVEKRYQRDVY 597 (597)
T ss_pred CCCCCccHHHHHHHhHHHHHHHHhCCcEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 8777999999999998899998888899999994389999999999999999999999999999999999999999999
No 4
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=1.1e-96 Score=793.42 Aligned_cols=543 Identities=43% Similarity=0.756 Sum_probs=466.7
Q ss_pred cEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcccC
Q 008647 4 SIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGD 83 (558)
Q Consensus 4 ~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~~d 83 (558)
.+++|+.+|||+|+||||+..|++||...... ....++|+|||+|++.|++||++|+.+|++|.++||++++.++.||
T Consensus 94 ~l~~~~~at~g~gd~~dn~~~f~~~l~~~~~~--~~~~~~~~vFglg~~~y~~f~~~a~~~d~~l~~lg~~rl~~~glgd 171 (645)
T KOG1158|consen 94 KLLVVVLATYGEGDPPDNAEAFYQSLTELKVL--PSSLLRYAVFGLGNSTYEHFNAFAKLVDNLLEELGANRLFQLGLGD 171 (645)
T ss_pred ceeeeeeehhcCCCCCccHHHHHHHHhhccCc--hhhhhhHHHhhccccchhhhHHHHHHHHHHHHHhhhhhhhcccccc
Confidence 58999999999999999999999999886432 2344899999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCceEEEEcCCcccccCCCCCCC--CCCCCCCCCCCceeE
Q 008647 84 DDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNM--PNGNASFDIHHPCRV 161 (558)
Q Consensus 84 ~~~~~~~~~~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 161 (558)
+..+.+++|..|++.+|+.+++.+..+..... .... ....+................... .....+++..+|+.+
T Consensus 172 d~~~~e~~f~~w~~~~~~~~~~~f~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (645)
T KOG1158|consen 172 DDAGLEEDFRTWKKPLLPELCETFSLEEDEAT-KEDE--TIRQYRTWTPNDPPFVPQAFPPELLNLLSSTPFDKVFPFPA 248 (645)
T ss_pred ccccchhHHHHHHHHHhHhhhheeeecccccc-CCcc--cccccccCcCccccccccccCccccccccCCcchhcccchh
Confidence 99999999999999999999998875432110 0000 000000000000000000000001 112356778899999
Q ss_pred EEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCCC-CCCCCCC
Q 008647 162 NVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDG-TPRGSSL 240 (558)
Q Consensus 162 ~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~-~~~~~~~ 240 (558)
.++.+..|..+.+.+.++|++++..++++.|+||||++|+|.|+++.|++++++|+++++..+.++...... ++..+..
T Consensus 249 ~~~~~~~l~~~~~~r~~~~~e~~~~~~~~~Y~~GD~~gv~p~N~~~~V~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (645)
T KOG1158|consen 249 LVVVNLALSTPSSDRSCIHLELDIYGPGLRYEPGDHFGVLPPNSDELVDELLERLGLNPDTDFSLQLELETDTNPTPAKK 328 (645)
T ss_pred hhhHHhhccCCCCceEEEEEEeecCCcccccccCCeeeecCCCCHHHHHHHHHHhcCCCccceEEEEeecCCCCCCcccc
Confidence 999999999888889999999999988999999999999999999999999999999876544443322221 2334567
Q ss_pred CCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHHHhCCCCCC
Q 008647 241 TPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATP 320 (558)
Q Consensus 241 ~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~ 320 (558)
++|++.|+|++++|++|+||+++|++++|+.||.||+|+.||++|+.|+|.+|..+|.+|+....+|++|||.+||++++
T Consensus 329 ~~p~~~~~t~~~~l~~~ldi~~~P~k~ll~~La~~a~d~~Eke~L~~L~s~~g~~~y~~~~~~~~~tl~dVl~~fps~kp 408 (645)
T KOG1158|consen 329 PHPFPLPTTLRTALTHYLDITGPPKKQLLRLLAEYATDPAEKERLEILSSKQGAEEYPRWVRQSCLTLLDVLEAFPSCKP 408 (645)
T ss_pred CCCCCCCCcHHHHHHHhccccCCCcHHHHHHHHHhcCCchHHHHHHHHhCccchhhHhHHHhcccccHHHHHhhCCCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCC-CcccCcccHHhhhcCCCCCCCCccEEE--EEeeC
Q 008647 321 PIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG-RIHKGVCSTWMKNAIPLEGNGDCSWAP--IFIRP 397 (558)
Q Consensus 321 ~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~-~~~~G~~S~~L~~l~~G~~~~~~~~v~--v~~p~ 397 (558)
|+.++++++ |.++||+|||||+|..+++++++++.++.|.+++| ..+.|+||+||.++++| +.+. +....
T Consensus 409 P~~~ll~~l-p~L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~------~~~~~~~~~~~ 481 (645)
T KOG1158|consen 409 PLPHLLELL-PRLQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPG------EKVPNPVPVGK 481 (645)
T ss_pred CHHHHHHhC-ccccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCc------cccCcceeecc
Confidence 999999999 99999999999999999999999999999999886 67789999999999999 5666 44555
Q ss_pred CCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCC-CCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 398 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGA-QLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 398 g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~-~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
..|++|.++.+|+||||+||||||||||+|++...++++. ....+|||||||+.+.|++|++||+++.+.+.++++.+|
T Consensus 482 s~frlp~dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l~~l~~A 561 (645)
T KOG1158|consen 482 SMFRLPSDPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGGMWLFFGCRNSDEDYLYREEWEEYKKAGILTRLDVA 561 (645)
T ss_pred cceecCCCCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcceEEEEeCCCchHHHHHHHHHHHHHhcCcchhheee
Confidence 6899999999999999999999999999999998766552 122389999999999899999999999999999999999
Q ss_pred EecCC-CCccchhhhhHhcHHHHHHhh-hCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeE
Q 008647 477 FSREG-SQKEYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYL 554 (558)
Q Consensus 477 ~Sr~~-~~k~yvq~~l~~~~~~l~~~~-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~ 554 (558)
|||++ +.+.||||++++++++||+++ .++++|||||++.+|+++|.++|.+|+++.+++++++|.+++++|++++||+
T Consensus 562 ~SReq~~~k~YVQd~l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i~~~~g~~~~~ea~~~lk~lk~~~Ry~ 641 (645)
T KOG1158|consen 562 FSREQTPKKIYVQDRLREYADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRILAKDGGLSEEEAEKYLKQLKKSKRYI 641 (645)
T ss_pred eeccCCCCceehhhHHHHHHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHHHHHhhCCccHHHHHHHHHHhhhccccc
Confidence 99998 789999999999999999988 5599999999976699999999999999999999999999999999999999
Q ss_pred EeeC
Q 008647 555 RDVW 558 (558)
Q Consensus 555 ~dvw 558 (558)
+|||
T Consensus 642 ~DVw 645 (645)
T KOG1158|consen 642 EDVW 645 (645)
T ss_pred cccC
Confidence 9999
No 5
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-92 Score=761.92 Aligned_cols=489 Identities=36% Similarity=0.638 Sum_probs=443.3
Q ss_pred EEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcccCC
Q 008647 5 IYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDD 84 (558)
Q Consensus 5 ~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~~d~ 84 (558)
.++||+||+|+|++|+||..||++|..... ..|.+++||||||||++|+.||.+++.++++|.++||+++.+++.+|.
T Consensus 97 ~~~~i~st~geGe~p~na~~f~~~l~~~~a--~~L~~l~yav~~lGDssy~~~~~~~k~~~~~l~~~Ga~~l~~~~~~D~ 174 (587)
T COG0369 97 LLLFVVSTQGEGEPPDNAVAFHEFLKGKKA--PKLDGLRYAVLGLGDSSYEFFCQAGKDFDRRLQELGATRLFPRVEADV 174 (587)
T ss_pred ceEEEEccccCCCCCCchHHHHHHhccccc--ccccccchhhhcCCccchhhhhccchhhHHHHHhcCcccccCcccccc
Confidence 789999999999999999999999987432 349999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCceEEEEcCCcccccCCCCCCCCCCCCCCCCCCceeEEEE
Q 008647 85 DQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVA 164 (558)
Q Consensus 85 ~~~~~~~~~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 164 (558)
+ +++....+|...+++.+...+........ .+. . . + ....++....++.+.+.
T Consensus 175 ~-~~e~~~~~w~~~~~~~l~~~~~~~~~~~~--~~~---------~--~-------~------~~~~~~~~~~~~~a~~~ 227 (587)
T COG0369 175 Q-DFEAAAAPWRDDVLELLKSKFPGQEAAPA--QVA---------T--S-------P------QSESPYSKPAPSVAILL 227 (587)
T ss_pred c-ccchhhhHHHHHHHHHHHhhccccccccc--ccc---------c--h-------h------cccccccccCcceeEee
Confidence 7 79999999999999998887654321110 000 0 0 0 01234456778899999
Q ss_pred eeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCCCCCC
Q 008647 165 VRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPF 244 (558)
Q Consensus 165 ~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (558)
.|++|+..+++++++||+|+++++++.|+|||+++|+|+|+++.|+++|+.+||++++.|.+.
T Consensus 228 ~n~~l~~~~~~k~~rhie~~l~~s~~~y~~GD~lgV~p~N~~~lV~~~l~~~gl~~~~~v~~~----------------- 290 (587)
T COG0369 228 ENRKLTGRDSDKDVRHIELDLPDSGLRYEPGDALGVWPENDPELVDEFLELLGLDPEEPVTVD----------------- 290 (587)
T ss_pred ccccCCccccCceeEEEEeecccccceeCCCCeeEEcCCCCHHHHHHHHHHcCCCCCceeccC-----------------
Confidence 999999999999999999999998999999999999999999999999999999998666221
Q ss_pred CCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHHHhCCCCCCChhH
Q 008647 245 PGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGV 324 (558)
Q Consensus 245 ~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~~~~~ 324 (558)
+.++++.++|++|+||+..| |.|+..|+.|+.++..++.|..++ ...++.|.. +++++|+|.+||++++|+++
T Consensus 291 ~~~~~~~~~l~~~~e~~~~~-~~~~~~l~~~~~~~~~~~~l~~l~----~~~~~~~~~--~~~~~d~L~~f~~~~l~~~~ 363 (587)
T COG0369 291 GETLPLVEALKSHFEFTSAP-KSLLENLAHFAGQEELRRLLEQLD----IADLQDYAK--RRTLIDVLRDFPPAKLPAEE 363 (587)
T ss_pred CCcchHHHHHHHheecccch-HHHHHHHHHhcCCHHHHHHHHhhh----hHHHHhhhc--cccHHHHHhhccccCCCHHH
Confidence 34789999999999999999 999999999999999999999885 566777776 78999999999999999999
Q ss_pred HHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCC-CCCCCCccEEEEEeeCC-CCcC
Q 008647 325 FFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIP-LEGNGDCSWAPIFIRPS-NFKL 402 (558)
Q Consensus 325 ~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~-G~~~~~~~~v~v~~p~g-~F~l 402 (558)
+++.+ |+++||.|||||+|..++++++|||.+|+|..+ ++.|.|+||+||+++.. | +.+.|.++.+ +|.+
T Consensus 364 li~~l-~~lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~-~~~r~GvcS~~L~~~~~~g------~~i~v~v~~n~nf~l 435 (587)
T COG0369 364 LIDLL-PPLKPRLYSIASSPGVSPDEVHLTVGVVRYQAE-GRERYGVCSGYLADLLEEG------DTIPVFVQPNKNFRL 435 (587)
T ss_pred HHHhC-ccCCCeeeEeccCCCCCCCeEEEEEEEEEeccC-CCcccccchHHHHhhhcCC------CeEEEEeccCCcccc
Confidence 99999 999999999999999999999999999999987 55889999999999777 6 8999999998 9999
Q ss_pred CCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCC
Q 008647 403 PANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS 482 (558)
Q Consensus 403 p~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~ 482 (558)
|.++.+||||||+||||||||+|+|++... + ..+++|||||||+.+.||+|++||++|.+.|.++++.+||||++.
T Consensus 436 p~~~~~PiIMIG~GTGIAPFRafvq~r~~~---~-~~gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~~~l~~AfSRdq~ 511 (587)
T COG0369 436 PEDPETPIIMIGPGTGIAPFRAFVQERAAN---G-AEGKNWLFFGCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRDQE 511 (587)
T ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHhc---c-ccCceEEEecCCCCccchhhHHHHHHHHhcCCceeEEEEEeecCC
Confidence 999889999999999999999999999873 3 456899999999988899999999999999999999999999999
Q ss_pred CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 483 QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 483 ~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
+|.||||+|++++++|++++++++.|||||++..|.++|.++|.+++.+.++++.|+|.++++.|++++||++|||
T Consensus 512 ~KiYVQd~lre~~del~~~l~~ga~~YVCGd~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~lk~~~RY~~DVy 587 (587)
T COG0369 512 EKIYVQDRLREQADELWEWLEEGAHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELKKEGRYQRDVY 587 (587)
T ss_pred CCccHHHHHHHhHHHHHHHHHCCCEEEEeCCCccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCceeeecC
Confidence 9999999999999999999999999999996699999999999999999999999999999999999999999999
No 6
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=100.00 E-value=4.1e-79 Score=648.84 Aligned_cols=389 Identities=51% Similarity=0.907 Sum_probs=358.5
Q ss_pred CCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCC-CccEEEEecCCCCC
Q 008647 155 IHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQS-LELLFSLHTDNEDG 233 (558)
Q Consensus 155 ~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~-~~~~~~~~~~~~~~ 233 (558)
..+||.|+|++|++||++ ++++++||+|++++.+++|+|||+|+|+|+|+++.|+++|++||++ ++..|.+......
T Consensus 2 ~~~~~~~~v~~~~~lt~~-~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~i~~~~~~~~- 79 (416)
T cd06204 2 AKNPFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVLGLDDRDTVISLKSLDEP- 79 (416)
T ss_pred CCCCeEeEEEEEeeccCC-CCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCceEEeecCCcc-
Confidence 356899999999999998 8999999999998778999999999999999999999999999999 8888888755431
Q ss_pred CCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHHH
Q 008647 234 TPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMA 313 (558)
Q Consensus 234 ~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~ 313 (558)
.+...|+|.|+|++++|++|+||+++|++.||+.|+.||+|+++|++|.+|+| +|.++|.+|+.++++|++|+|.
T Consensus 80 ----~~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~s-~~~~~~~~~~~~~~~~~~dvL~ 154 (416)
T cd06204 80 ----ASKKVPFPCPTTYRTALRHYLDITAPVSRQVLAALAQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNLLEVLQ 154 (416)
T ss_pred ----cccCCCCCCCccHHHHHHhhEEeCCCCcHHHHHHHHHHcCCHHHHHHHHHHHh-cCHHHHHHHHhhcCCCHHHHHH
Confidence 12456899999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hCCCCC---CChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcC----------
Q 008647 314 EFPSAT---PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAI---------- 380 (558)
Q Consensus 314 ~f~~~~---~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~---------- 380 (558)
+||+++ +|++.|++++ |+++||+|||||+|..+++.++|+|+++++.++.++.+.|+||+||+++.
T Consensus 155 ~f~s~~~~~~pl~~ll~~l-p~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~ 233 (416)
T cd06204 155 DFPSAKPTPPPFDFLIELL-PRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPT 233 (416)
T ss_pred hCcccCCCCCCHHHHHHhC-ccCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhccccccc
Confidence 999999 9999999999 99999999999999877899999999999999888889999999999977
Q ss_pred -----------CCCCCCCccEEEEEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEecc
Q 008647 381 -----------PLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCR 449 (558)
Q Consensus 381 -----------~G~~~~~~~~v~v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R 449 (558)
+| +.|.+.+|.|.|.+|.+..+|+||||+|||||||+||++++....+.+...++++||||||
T Consensus 234 ~~~~~~~~~~~~g------~~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R 307 (416)
T cd06204 234 PYYLSGPRKKGGG------SKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCR 307 (416)
T ss_pred ccccccccccCCC------CeEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCC
Confidence 56 8999999999999997777899999999999999999999875432232357999999999
Q ss_pred CCCCccccHHHHHHHHHcCCccEEEEEEecCCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcc-hHHHHHHHHHHH
Q 008647 450 NRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKG-MARDVHRTLHTI 528 (558)
Q Consensus 450 ~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~-M~~~v~~~L~~i 528 (558)
+++.|++|++||++|++.+.++++++++||++..++|||++|.++.+.+++++.+++.|||||| +. |+++|.++|.++
T Consensus 308 ~~~~d~ly~~el~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~i~~~~~~~~~~l~~~~~vYvCGp-~~~M~~~V~~~L~~i 386 (416)
T cd06204 308 HPDEDFIYKDELEEYAKLGGLLELVTAFSREQPKKVYVQHRLAEHAEQVWELINEGAYIYVCGD-AKNMARDVEKTLLEI 386 (416)
T ss_pred CCCcccchHHHHHHHHHcCCceEEEEEECcCCCCCcchHHHHHHhHHHHHHHHHcCCEEEEECC-cccchHHHHHHHHHH
Confidence 9844999999999999988888999999998877899999999888888888877899999999 66 999999999999
Q ss_pred HHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 529 VQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 529 ~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
+++++++++++|++|+++|+++|||++|||
T Consensus 387 ~~~~~~~~~~~A~~~l~~l~~~gRy~~dvw 416 (416)
T cd06204 387 LAEQGGMTETEAEEYVKKLKTRGRYQEDVW 416 (416)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCeeEecC
Confidence 999999999999999999999999999999
No 7
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=100.00 E-value=1.7e-77 Score=631.41 Aligned_cols=379 Identities=40% Similarity=0.745 Sum_probs=350.1
Q ss_pred EEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCCCC
Q 008647 163 VAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTP 242 (558)
Q Consensus 163 v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 242 (558)
|++|++||+++++++|+||+|++++++++|+|||+|+|+|+|+++.|+++|++||++++..++++.... .+...
T Consensus 2 v~~~~~lt~~~~~~~~~hl~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~------~~~~~ 75 (382)
T cd06207 2 VTENKRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGDDVVRVEPNEQ------QRGKP 75 (382)
T ss_pred cceeeecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEecccc------cccCC
Confidence 678999999999999999999998778999999999999999999999999999999999988875441 12456
Q ss_pred CCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHHHhCCCCCCCh
Q 008647 243 PFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPI 322 (558)
Q Consensus 243 ~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~~~ 322 (558)
|+|.|+|++++|++||||+++|++.+|+.||.||+|+++|++|.+|++.++.+.|.+| ++++++|+|.+||++++|+
T Consensus 76 ~~~~~~t~~~ll~~~~dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~~~~~~~---~~~~~~d~L~~f~~~~~~~ 152 (382)
T cd06207 76 PFPEPISVRQLLKKFLDIFGKPTKKFLKLLSQLATDEEEKEDLYKLASREGRTEYKRY---EKYTYLEVLKDFPSVRPTL 152 (382)
T ss_pred CCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhChhhHHHHHhc---cCCCHHHHHHhCCcCCCCH
Confidence 8899999999999999999999999999999999999999999999999999999988 7899999999999999999
Q ss_pred hHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCCCCcC
Q 008647 323 GVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKL 402 (558)
Q Consensus 323 ~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F~l 402 (558)
+.+++++ |+++||+|||||+|..+++.++|+|+++.+.++.++.+.|+||+||+++++| +.|.+.+|.|.|.+
T Consensus 153 ~~ll~~l-p~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~~p~g~F~l 225 (382)
T cd06207 153 EQLLELC-PLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVG------QRVTVFIKKSSFKL 225 (382)
T ss_pred HHHHHhC-cCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCC------CEEEEEEECCcccC
Confidence 9999999 9999999999999976678999999999998887888899999999999999 89999999999999
Q ss_pred CCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCC
Q 008647 403 PANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS 482 (558)
Q Consensus 403 p~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~ 482 (558)
|.+..+|+||||+|||||||+||++++....+.+...++++||||||+.+.|++|++||++|++.+.++++++++||++.
T Consensus 226 p~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Srd~~ 305 (382)
T cd06207 226 PKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVLTTLGTAFSRDQP 305 (382)
T ss_pred CCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCCceEEEEecCCCC
Confidence 97778899999999999999999999876433333568999999999994499999999999999998899999999987
Q ss_pred CccchhhhhHhcHHHHHHhhhCC-CEEEEeCCCcc-hHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 483 QKEYVQHKMMDKAAQLWSLLSKE-GYLYVCGDAKG-MARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 483 ~k~yvq~~l~~~~~~l~~~~~~~-~~iyvCGp~~~-M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
.++|||+++.++.+.+++++.++ +.|||||| +. |+++|+++|.+++++++++++++|++++++|+++|||++|||
T Consensus 306 ~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~-~~~M~~~V~~~L~~~~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 382 (382)
T cd06207 306 KKVYVQDLIRENSDLVYQLLEEGAGVIYVCGS-TWKMPPDVQEAFEEILKKHGGGDEELAEKKIEELEERGRYVVEAW 382 (382)
T ss_pred CceEhHHHHHHCHHHHHHHHhcCCCEEEEECC-cccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 79999999999888888877655 49999999 66 999999999999999999999999999999999999999999
No 8
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=100.00 E-value=4.2e-77 Score=630.48 Aligned_cols=382 Identities=38% Similarity=0.690 Sum_probs=345.2
Q ss_pred EEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCC--CccEEEEecCCCCCCCCCCCC
Q 008647 163 VAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQS--LELLFSLHTDNEDGTPRGSSL 240 (558)
Q Consensus 163 v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~--~~~~~~~~~~~~~~~~~~~~~ 240 (558)
|++|++||+++++++++||+|++++.+++|+|||+|+|+|+|+++.|+++|++||++ ++..++++........ +...
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~ 80 (398)
T cd06203 2 ISSAKKLTEGDDVKTVVDLTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEQADQPCEVKVVPNTKKK-NAKV 80 (398)
T ss_pred cccceEECCCCCCceEEEEEEecCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCcccc-cccc
Confidence 678999999999999999999998778999999999999999999999999999999 7888888743221111 1235
Q ss_pred CCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHHHhCCCCCC
Q 008647 241 TPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATP 320 (558)
Q Consensus 241 ~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~ 320 (558)
+.++|.|+|++++|++|+||+++|+++||+.||.||+|+++|++|.+|++.+|+++|++|+.++++|++|||++||++++
T Consensus 81 ~~~~p~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvL~~f~s~~~ 160 (398)
T cd06203 81 PVHIPKVVTLRTILTWCLDIRAIPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDYTDFVRKRGLSLLDLLEAFPSCRP 160 (398)
T ss_pred CCCCCCCccHHHHHHHhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHHHHHHHHhhcCCCHHHHHHhCCCCCC
Confidence 66888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcC-----CCCCCCCccEEEEEe
Q 008647 321 PIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAI-----PLEGNGDCSWAPIFI 395 (558)
Q Consensus 321 ~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~-----~G~~~~~~~~v~v~~ 395 (558)
|++.+++++ |+++||+|||||+|..+++.++|+|+++.+++ .|+||+||++++ +| +.|.+.+
T Consensus 161 pl~~ll~~l-p~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~------~G~~S~~L~~l~~~~~~~G------~~v~i~~ 227 (398)
T cd06203 161 PLSLLIEHL-PRLQPRPYSIASSPLEGPGKLRFIFSVVEFPA------KGLCTSWLESLCLSASSHG------VKVPFYL 227 (398)
T ss_pred CHHHHHHhC-ccCCCcceeecCCcccCCCeEEEEEEEEEecC------CChhhHHHHHhhhhhcCCC------CEEEEEE
Confidence 999999999 99999999999999876789999999987544 599999999988 88 8999999
Q ss_pred e-CCCCcCCCC-CCCCEEEEccCccccchHHHHHHHHHHhhc--CCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcc
Q 008647 396 R-PSNFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQD--GAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVIS 471 (558)
Q Consensus 396 p-~g~F~lp~~-~~~plilIa~GtGIAP~~s~l~~~~~~~~~--~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~ 471 (558)
+ .|.|.+|.+ ..+|+||||+|||||||+||++++.....+ +...++++||||||+++.|++|++||++|++.+.++
T Consensus 228 ~~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~~ 307 (398)
T cd06203 228 RSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGILT 307 (398)
T ss_pred ecCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCCc
Confidence 5 568999876 678999999999999999999998763311 224689999999999944999999999999999998
Q ss_pred EEEEEEecCCC---CccchhhhhHhcHHHHHHhh-hCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q 008647 472 ELILAFSREGS---QKEYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKF 547 (558)
Q Consensus 472 ~~~~a~Sr~~~---~k~yvq~~l~~~~~~l~~~~-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l 547 (558)
+++++|||++. .++|||+++.++.+.+++++ ..++.||||||++.|+++|+++|.+|+++++++++++|++|+++|
T Consensus 308 ~~~~a~SRd~~~~g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~~i~~~~~~~~~~~a~~~~~~l 387 (398)
T cd06203 308 RLIVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVDILSKELGLDKLEAKKLLARL 387 (398)
T ss_pred eEEEEECCCCCCCCCceecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999876 48999999999998998876 468999999996689999999999999999999999999999999
Q ss_pred HHCCCeEEeeC
Q 008647 548 QMEGRYLRDVW 558 (558)
Q Consensus 548 ~~~~Ry~~dvw 558 (558)
+++|||++|||
T Consensus 388 ~~~gRy~~dvw 398 (398)
T cd06203 388 RKEDRYLEDVW 398 (398)
T ss_pred HHcCCeeeecC
Confidence 99999999999
No 9
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=100.00 E-value=2.3e-76 Score=625.94 Aligned_cols=387 Identities=41% Similarity=0.717 Sum_probs=343.8
Q ss_pred EEEeeeecCCCCCCCcEEEEEEEecC-CCccccCCCeEEEeecCCHHHHHHHHHHhCCCC--ccEEEEecCCCCCCCCC-
Q 008647 162 NVAVRRELHKPDSDRSCIHLEFDVSG-TGITYETGDHVGVYVENCDETVEEAGKLLGQSL--ELLFSLHTDNEDGTPRG- 237 (558)
Q Consensus 162 ~v~~~~~l~~~~~~~~~~~i~l~~~~-~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~--~~~~~~~~~~~~~~~~~- 237 (558)
+|++|++||++++.|+++||+||+++ ++++|+|||+|+|+|+|+++.|+++|++|++.+ +..+.++.........+
T Consensus 1 ~~~~~~~l~~~~~~~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T cd06202 1 KVISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRLHDAPPPDQVIKLEVLEERSTALGI 80 (406)
T ss_pred CcceeeecCCCCCCceEEEEEEECCCCCCCCCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCCceEEEEecCCCCccccc
Confidence 36789999999999999999999986 589999999999999999999999999999854 67777765433221111
Q ss_pred --CCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHHHhC
Q 008647 238 --SSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEF 315 (558)
Q Consensus 238 --~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f 315 (558)
.....+++.|+|++++|++|+||+++|++.+|+.|+.||+|+.+|++|.+|++ +.+.|++|+.++++|++|+|.+|
T Consensus 81 ~~~~~~~~~~~~~tl~~ll~~~lDl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~~~dvL~~f 158 (406)
T cd06202 81 IKTWTPHERLPPCTLRQALTRYLDITTPPTPQLLQLLATLATDEKDKERLEVLGK--GSSEYEDWKWYKNPNILEVLEEF 158 (406)
T ss_pred cccccccCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhc--CHHHHHHHHhccCCCHHHHHHhC
Confidence 11234566699999999999999999999999999999999999999999986 88899999999999999999999
Q ss_pred CCCCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCC--CCcccCcccHHhhhcCCCCCCCCccEEEE
Q 008647 316 PSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPT--GRIHKGVCSTWMKNAIPLEGNGDCSWAPI 393 (558)
Q Consensus 316 ~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~--~~~~~G~~S~~L~~l~~G~~~~~~~~v~v 393 (558)
|++++|++.+++++ |+++||+|||||+|..+++.++|+|+++.+.++. ++.+.|+||+||+++++| +.|.+
T Consensus 159 ~s~~~~~~~ll~~l-p~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v 231 (406)
T cd06202 159 PSLQVPASLLLTQL-PLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPG------DTVPC 231 (406)
T ss_pred CcCCCCHHHHHHhC-cccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCC------CEEEE
Confidence 99999999999999 9999999999999987789999999999877653 346789999999999999 89999
Q ss_pred EeeCC-CCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhh----cCCCCCCeEEEEeccCCCCccccHHHHHHHHHcC
Q 008647 394 FIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQ----DGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG 468 (558)
Q Consensus 394 ~~p~g-~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~----~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~ 468 (558)
.++.+ .|.+|.+..+|+||||+||||||||||++++..... .+...++++||||||+++.|++|++||+++.+.+
T Consensus 232 ~~~~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~ 311 (406)
T cd06202 232 FVRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKG 311 (406)
T ss_pred EEeeCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcC
Confidence 98754 899998778999999999999999999999865321 1224689999999999944999999999999999
Q ss_pred CccEEEEEEecCCC-CccchhhhhHhcHHHHHHhh-hCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Q 008647 469 VISELILAFSREGS-QKEYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKK 546 (558)
Q Consensus 469 ~~~~~~~a~Sr~~~-~k~yvq~~l~~~~~~l~~~~-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~ 546 (558)
.+++++++|||++. .++|||+.|.++.+.+++++ ..++.|||||| +.|+++|.++|.+++++++++++++|++|+++
T Consensus 312 ~~~~~~~a~SR~~~~~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~-~~M~~~V~~~L~~i~~~~~~~s~~~A~~~~~~ 390 (406)
T cd06202 312 VLTEVYTALSREPGKPKTYVQDLLKEQAESVYDALVREGGHIYVCGD-VTMAEDVSQTIQRILAEHGNMSAEEAEEFILK 390 (406)
T ss_pred CCceEEEEEcCCCCCCCeehhhHHHHhHHHHHHHHHhCCCEEEEeCC-CchHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99899999999865 58999999999999999976 57899999999 68999999999999999999999999999999
Q ss_pred HHHCCCeEEeeC
Q 008647 547 FQMEGRYLRDVW 558 (558)
Q Consensus 547 l~~~~Ry~~dvw 558 (558)
|+++|||++|||
T Consensus 391 l~~~gRy~~dvw 402 (406)
T cd06202 391 LRDENRYHEDIF 402 (406)
T ss_pred HHHcCCeEEEec
Confidence 999999999999
No 10
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=100.00 E-value=7.7e-75 Score=611.67 Aligned_cols=376 Identities=35% Similarity=0.612 Sum_probs=339.3
Q ss_pred EEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCCC
Q 008647 162 NVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLT 241 (558)
Q Consensus 162 ~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (558)
+|+.|++||+++++++++||+|++++ +++|+|||+|+|+|+|+++.|+++|++||++++..|+++.... ...
T Consensus 1 ~v~~~~~lt~~~~~~~~~~~~~~~~~-~~~y~~GD~l~v~P~N~~~~V~~~l~~l~l~~~~~i~i~~~~~-------~~~ 72 (384)
T cd06206 1 TVVENRELTAPGVGPSKRHLELRLPD-GMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDTVLTISASGS-------ATG 72 (384)
T ss_pred CeeeEEEcCCCCCCccEEEEEEECCC-CCccCCCCEEEEECCCCHHHHHHHHHHhCCCccCEEEEecCCC-------CCC
Confidence 47899999999999999999999976 7999999999999999999999999999999999988876332 234
Q ss_pred CCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHHHhCCCCCCC
Q 008647 242 PPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPP 321 (558)
Q Consensus 242 ~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~~ 321 (558)
.|++.|+|++++|++|+||+++|+++||+.||.||+|+++|++|..++ ++.|.+++..+++|++|+|.+||++++|
T Consensus 73 ~p~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~l~~~~----~~~~~~~~~~~~~~~~d~l~~f~s~~~~ 148 (384)
T cd06206 73 LPLGTPISVSELLSSYVELSQPATRRQLAALAEATRCPDTKALLERLA----GEAYAAEVLAKRVSVLDLLERFPSIALP 148 (384)
T ss_pred CCCCCCEEHHHHHHhhccccCCCCHHHHHHHHHHCCCHHHHHHHHHhh----hhHHHHHHHhcCCCHHHHHHhCCCCCCC
Confidence 578889999999999999999999999999999999999999999884 4679999999999999999999999999
Q ss_pred hhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCC-CcccCcccHHhhhcCCCCCCCCccEEEEE--eeCC
Q 008647 322 IGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG-RIHKGVCSTWMKNAIPLEGNGDCSWAPIF--IRPS 398 (558)
Q Consensus 322 ~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~-~~~~G~~S~~L~~l~~G~~~~~~~~v~v~--~p~g 398 (558)
++||++++ |+++||+|||||+|..+++.++|+|+++.+.++.+ +.+.|.||+||+++++| +.|.+. +|.|
T Consensus 149 ~~~~l~~~-p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~i~~p~g 221 (384)
T cd06206 149 LATFLAML-PPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPG------DSIHVSVRPSHS 221 (384)
T ss_pred HHHHHHhC-cccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCC------CeEEEEEecCCC
Confidence 99999999 99999999999999766789999999998876654 56789999999999999 888865 5678
Q ss_pred CCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEe
Q 008647 399 NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFS 478 (558)
Q Consensus 399 ~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~S 478 (558)
.|.+|.+..+|+||||+|||||||+||++++......+...++++||||||+.+.|++|++||++|++.+. +++++++|
T Consensus 222 ~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~-~~l~~a~S 300 (384)
T cd06206 222 AFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAAGV-VSVRRAYS 300 (384)
T ss_pred ccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHHCCC-eEEEEEec
Confidence 99998777789999999999999999999987643233345789999999999449999999999998654 48999999
Q ss_pred cCCCC-ccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHHHcc----CCCHHHHHHHHHHHHHCCCe
Q 008647 479 REGSQ-KEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQE----NVDSSKAESIVKKFQMEGRY 553 (558)
Q Consensus 479 r~~~~-k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~----~~~~~~a~~~~~~l~~~~Ry 553 (558)
|++.. ++|||+.|.+..+.+++++.+++.|||||| ++|+++|.++|.+++.+++ ++++++|++|+++|+++|||
T Consensus 301 r~~~~~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~~~~~~~~~~~~A~~~~~~l~~~gry 379 (384)
T cd06206 301 RPPGGGCRYVQDRLWAEREEVWELWEQGARVYVCGD-GRMAPGVREVLKRIYAEKDERGGGSDDEEAEEWLEELRNKGRY 379 (384)
T ss_pred ccCCCCCEechhhHHhhHHHHHHHHHCCcEEEEECC-CchHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHcCCe
Confidence 98764 899999998888888887778899999999 6799999999999999999 99999999999999999999
Q ss_pred EEeeC
Q 008647 554 LRDVW 558 (558)
Q Consensus 554 ~~dvw 558 (558)
++|||
T Consensus 380 ~~dvw 384 (384)
T cd06206 380 ATDVF 384 (384)
T ss_pred eeecC
Confidence 99999
No 11
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=100.00 E-value=2.2e-71 Score=579.89 Aligned_cols=356 Identities=40% Similarity=0.645 Sum_probs=320.8
Q ss_pred EEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCCC
Q 008647 162 NVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLT 241 (558)
Q Consensus 162 ~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (558)
+|++|++||+++++++++||+|++++++++|+|||+|+|+|+|+++.|+++|++||++++..+.+
T Consensus 1 ~v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~--------------- 65 (360)
T cd06199 1 TVLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALGLSGDEPVST--------------- 65 (360)
T ss_pred CcceeEeCCCCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCeEeC---------------
Confidence 46789999999999999999999998789999999999999999999999999999998876531
Q ss_pred CCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHHHhCC--CCC
Q 008647 242 PPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFP--SAT 319 (558)
Q Consensus 242 ~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~--~~~ 319 (558)
+++.++|++++|++|+||+++ .++.|+.||+++.++++|.. +|++.|.+ .+|++|+|++|| +++
T Consensus 66 -~~~~~~t~~~~l~~~~dl~~~----~~~~l~~~a~~~~~~~~l~~----~~~~~~~~-----~~~~~d~L~~f~~~~~~ 131 (360)
T cd06199 66 -VGGGTLPLREALIKHYEITTL----LLALLESYAADTGALELLAL----AALEAVLA-----FAELRDVLDLLPIPPAR 131 (360)
T ss_pred -CCCCcccHHHHHHhhhhhccC----hHHHHHHhcCCcchHHHHhh----cCHHHHHc-----cCcHHHHHHhccccCCC
Confidence 345689999999999999997 55568999999988888775 67777764 489999999999 999
Q ss_pred CChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhc-CCCCCCCCccEEEEEeeCC
Q 008647 320 PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNA-IPLEGNGDCSWAPIFIRPS 398 (558)
Q Consensus 320 ~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l-~~G~~~~~~~~v~v~~p~g 398 (558)
+++|||++++ |+++||+|||||+|..+++.++|+|+++.+.++ ++.+.|.||+||+++ ++| +.|.++++.|
T Consensus 132 ~~~gq~l~l~-~~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~-~~~~~G~~S~~L~~~~~~G------d~v~v~~~~~ 203 (360)
T cd06199 132 LTAEELLDLL-RPLQPRLYSIASSPKAVPDEVHLTVAVVRYESH-GRERKGVASTFLADRLKEG------DTVPVFVQPN 203 (360)
T ss_pred CCHHHHHHhC-cCCCCcceeeccCcccCCCeEEEEEEEeeecCC-CCccceehhHHHHhcCCCC------CEEEEEEecC
Confidence 9999999999 999999999999998767899999999987763 466789999999995 589 8999998765
Q ss_pred -CCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEE
Q 008647 399 -NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 477 (558)
Q Consensus 399 -~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~ 477 (558)
.|.+|.+..+|+||||+|||||||+||++++... + ..++++||||||+...|++|++||+++++.+.+++++++|
T Consensus 204 ~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~---~-~~~~~~L~~G~R~~~~D~~y~~el~~~~~~~~~~~~~~a~ 279 (360)
T cd06199 204 PHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREAT---G-AKGKNWLFFGERHFATDFLYQDELQQWLKDGVLTRLDTAF 279 (360)
T ss_pred CCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhc---c-CCCcEEEEEcCCCCccchhHHHHHHHHHHcCCCeEEEEEE
Confidence 8999977778999999999999999999998752 2 4588999999999845999999999999999888999999
Q ss_pred ecCCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEee
Q 008647 478 SREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDV 557 (558)
Q Consensus 478 Sr~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv 557 (558)
||++..++|||+.+.++.+.+++++..++.||||||...|+++|+++|.+|+++++++++++|++++++|+++|||++||
T Consensus 280 Sr~~~~~~yVq~~l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv 359 (360)
T cd06199 280 SRDQAEKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAALLDIIATEGGMDEEEAEAYLKELKKEKRYQRDV 359 (360)
T ss_pred ccCCCCCccHHHHHHHhHHHHHHHHhCCCEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeec
Confidence 99987889999999998888888887789999999933899999999999999999999999999999999999999999
Q ss_pred C
Q 008647 558 W 558 (558)
Q Consensus 558 w 558 (558)
|
T Consensus 360 w 360 (360)
T cd06199 360 Y 360 (360)
T ss_pred C
Confidence 9
No 12
>PRK06214 sulfite reductase; Provisional
Probab=100.00 E-value=1.6e-70 Score=590.24 Aligned_cols=368 Identities=37% Similarity=0.632 Sum_probs=327.3
Q ss_pred CCCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCC
Q 008647 151 ASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDN 230 (558)
Q Consensus 151 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~ 230 (558)
..++..+||.++|++|++||+++++++++||+||+++.+++|+|||+|+|+|+|+++.|+++|++||++++..+
T Consensus 161 ~~~~~~~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~------ 234 (530)
T PRK06214 161 LGTSRDNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPEFPI------ 234 (530)
T ss_pred CccCcCCCEEEEEEeEEEcCCCCCCceEEEEEEecCCCCCccCCCCEEEEeccCCHHHHHHHHHHhCCCccCcc------
Confidence 45678899999999999999999999999999999988899999999999999999999999999999976432
Q ss_pred CCCCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHH
Q 008647 231 EDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLE 310 (558)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d 310 (558)
.++|++++|++|+||+++| +.+|+.|+.+++++. |++|+.|++.++.+... ...+++|
T Consensus 235 ---------------~~~tlr~~L~~~~Dl~~~p-~~~~~~la~~~~~~~-~~~l~~L~~~~~~~~~~-----~~~~vld 292 (530)
T PRK06214 235 ---------------GGKTLREALLEDVSLGPAP-DGLFELLSYITGGAA-RKKARALAAGEDPDGDA-----ATLDVLA 292 (530)
T ss_pred ---------------CCccHHHHHHHheeccCCC-HHHHHHHHHhCCcHH-HHHHHHhhcccChhhhh-----hhCcHHH
Confidence 2689999999999999965 899999999998776 77888886543332221 2468999
Q ss_pred HHHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCcc
Q 008647 311 VMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCS 389 (558)
Q Consensus 311 ~l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~ 389 (558)
+|++||+++++++++++++ |+++||+|||||+|..+++.++|+|+++.|.. .++.+.|+||+||++ +++| +
T Consensus 293 vL~~fp~~~~~~~~lle~l-p~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~-~~~~~~G~~S~~L~~~l~~G------d 364 (530)
T PRK06214 293 ALEKFPGIRPDPEAFVEAL-DPLQPRLYSISSSPKATPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERLAPG------T 364 (530)
T ss_pred HHHhCCCCCCCHHHHHhhc-CCCCcEEEEeccCCcCCCCEEEEEEEEEeecc-CCccccchhhHHHHhcCCCC------C
Confidence 9999999999999999999 99999999999999766789999999998764 467788999999985 9999 8
Q ss_pred EEEEEeeCC-CCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcC
Q 008647 390 WAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG 468 (558)
Q Consensus 390 ~v~v~~p~g-~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~ 468 (558)
.|.++++.+ +|.+|.+..+|+||||+||||||||||++++... + ..++++||||||+.+.|++|++||+++.+.+
T Consensus 365 ~V~v~i~~~~gF~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~---~-~~g~~~LffG~R~~~~D~ly~dEL~~l~~~g 440 (530)
T PRK06214 365 RVRVYVQKAHGFALPADPNTPIIMVGPGTGIAPFRAFLHERAAT---K-APGRNWLFFGHQRSATDFFYEDELNGLKAAG 440 (530)
T ss_pred EEEEEecCCCCCccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHh---c-CCCCeEEEEEecCChhhhHHHHHHHHHHHhC
Confidence 999987543 5999877778999999999999999999998752 1 4578999999987666999999999999999
Q ss_pred CccEEEEEEecCCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 008647 469 VISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQ 548 (558)
Q Consensus 469 ~~~~~~~a~Sr~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~ 548 (558)
.+++++++|||++..++|||++|.++.+++++++.++++||||||++.|.++|+++|.+|+++++++++++|++|+++|+
T Consensus 441 ~l~~l~~afSRd~~~k~YVQ~~L~e~~~~l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~il~~~g~~s~~~A~~~l~~l~ 520 (530)
T PRK06214 441 VLTRLSLAWSRDGEEKTYVQDRMRENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAELK 520 (530)
T ss_pred CceEEEEEEecCCCCCCchhhHHHHHHHHHHhhhcCCcEEEEeCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 98889999999988899999999998889999888889999999955688999999999999999999999999999999
Q ss_pred HCCCeEEeeC
Q 008647 549 MEGRYLRDVW 558 (558)
Q Consensus 549 ~~~Ry~~dvw 558 (558)
++|||++|||
T Consensus 521 ~~gRY~~Dvw 530 (530)
T PRK06214 521 KAGRYQADVY 530 (530)
T ss_pred HCCCEEEecC
Confidence 9999999999
No 13
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=100.00 E-value=1.4e-47 Score=373.72 Aligned_cols=218 Identities=44% Similarity=0.783 Sum_probs=188.9
Q ss_pred CCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCC
Q 008647 152 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNE 231 (558)
Q Consensus 152 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~ 231 (558)
||+.++||.|+|++|++||+++++|+++||+|++++.+++|+|||+|+|+|+|+++.|++++++||+++++.|+++....
T Consensus 2 ~~~~~~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~d~~v~~~~~~~ 81 (219)
T PF00667_consen 2 PYSRKNPFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPNDPEEVERLLKRLGLDPDEPVTLKPKEQ 81 (219)
T ss_dssp SHBTTB-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SSEHHHHHHHHHHHTSGTTSEEEEEESST
T ss_pred CcCCCCCEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccCCHHHHHHHHHHhCCCcceEEEEEeccc
Confidence 57789999999999999999999999999999999889999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHH
Q 008647 232 DGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 311 (558)
Q Consensus 232 ~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~ 311 (558)
. .....++|.++||+++|++|+||+++|++.||+.|+.||+|+++|++|++|++.+|++.|.+|+.++++|++|+
T Consensus 82 ~-----~~~~~~~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~t~~di 156 (219)
T PF00667_consen 82 N-----NSVKPPFPSPITLRDLLTHYLDITSPPSRSFLRALAEFATDEEEKERLLELASDEGKDDYKDYIWRERRTLLDI 156 (219)
T ss_dssp T-----SSCCSSSSSSEEHHHHHHHTB-TSSB--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHHHHHTTTTTHCHHHH
T ss_pred c-----cccccccccceeeeeeeeeeeecccccccceeeeeeecCCCHHHHHHHHHhcchhhhhhhhhhhhcccCcHHHH
Confidence 3 13567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHH
Q 008647 312 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTW 375 (558)
Q Consensus 312 l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~ 375 (558)
|.+||++++|+++|++++ |+++||+|||||+|..+++.++|||++++|+++.|+.+.|+||+|
T Consensus 157 l~~fps~~~pl~~ll~~l-p~l~PR~YSIsSS~~~~p~~v~ltv~vv~~~~~~g~~r~G~cS~y 219 (219)
T PF00667_consen 157 LEDFPSCKPPLEELLELL-PPLQPRYYSISSSPLVHPNKVHLTVSVVEYPTPRGRIRRGVCSSY 219 (219)
T ss_dssp HHHSTTBTC-HHHHHHHS--B---EEEEB-S-TTTSTTEEEEEEEE-EEECTTSSEEE-HHHHH
T ss_pred HhhCcccCCCHHHhhhhC-CCCCCcceeecccccCCCCEEEEEEEEEEEecCCCCeeEeeCCCC
Confidence 999999999999999999 999999999999999999999999999999889999999999998
No 14
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=100.00 E-value=2.3e-42 Score=357.77 Aligned_cols=273 Identities=28% Similarity=0.479 Sum_probs=229.0
Q ss_pred CCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCC
Q 008647 152 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNE 231 (558)
Q Consensus 152 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~ 231 (558)
.|..++|+.++|+.|.+++.++...+++||+|+.++ .+.|+||..++|.|+..+
T Consensus 84 ~~~~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~-~~~f~~GQfv~I~~~g~~------------------------- 137 (367)
T PLN03115 84 KFRPKEPYTGRCLLNTKITGDDAPGETWHMVFSTEG-EIPYREGQSIGVIPDGID------------------------- 137 (367)
T ss_pred eeccCCCeEEEEEeecccccCCCCCceEEEEEcCCC-CCCcCCCCEEEEEcCCcC-------------------------
Confidence 477899999999999999998877899999999765 689999999999765321
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHH
Q 008647 232 DGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 311 (558)
Q Consensus 232 ~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~ 311 (558)
.+|
T Consensus 138 -----------------------------------------------------------~~g------------------ 140 (367)
T PLN03115 138 -----------------------------------------------------------KNG------------------ 140 (367)
T ss_pred -----------------------------------------------------------CCC------------------
Confidence 000
Q ss_pred HHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCC---CCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCc
Q 008647 312 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDC 388 (558)
Q Consensus 312 l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~---~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~ 388 (558)
.+..+|+|||||+|.. .++.++|+|+++.|.++.|+...|.||+||+++++|
T Consensus 141 -------------------~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~G------ 195 (367)
T PLN03115 141 -------------------KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPG------ 195 (367)
T ss_pred -------------------CcCceeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCCc------
Confidence 2235799999999843 246899999988887766777789999999999999
Q ss_pred cEEEEEeeCCCCc-CCCCCCCCEEEEccCccccchHHHHHHHHHHhhcC-CCCCCeEEEEeccCCCCccccHHHHHHHHH
Q 008647 389 SWAPIFIRPSNFK-LPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNFEE 466 (558)
Q Consensus 389 ~~v~v~~p~g~F~-lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~-~~~~~i~L~~G~R~~~~d~~y~~el~~~~~ 466 (558)
+.|.+.+|.|.|. +|.+..+|+||||+|||||||+||++++......+ ...++++||||||+.+ |++|.+||++|++
T Consensus 196 d~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~-dlly~dELe~l~~ 274 (367)
T PLN03115 196 AEVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKE 274 (367)
T ss_pred CEEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccccCCCcEEEEEccCCHH-HhhHHHHHHHHHH
Confidence 8999999999654 56556789999999999999999999875422111 0146899999999998 9999999999998
Q ss_pred cCC-ccEEEEEEecCCC----CccchhhhhHhcHHHHHHhhh-CCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHH
Q 008647 467 EGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKA 540 (558)
Q Consensus 467 ~~~-~~~~~~a~Sr~~~----~k~yvq~~l~~~~~~l~~~~~-~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a 540 (558)
... +++++.++||++. .++|||++|.++.+++++++. .+++|||||| ++|+++|.++|.++...++ + ++
T Consensus 275 ~~p~~f~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~~~~~vYiCGp-~~M~~~V~~~l~~l~~~~g-~---~~ 349 (367)
T PLN03115 275 KAPENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAKDG-I---DW 349 (367)
T ss_pred hCCCCEEEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhcccCCeEEEEeCC-HHHHHHHHHHHHHHHHHhC-c---cH
Confidence 764 7899999999865 478999999998888888774 4689999999 8999999999999998764 3 48
Q ss_pred HHHHHHHHHCCCeEEeeC
Q 008647 541 ESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 541 ~~~~~~l~~~~Ry~~dvw 558 (558)
.+++++|+++|||++|||
T Consensus 350 ~~~~~~lk~~~r~~~e~y 367 (367)
T PLN03115 350 FEYKKQLKKAEQWNVEVY 367 (367)
T ss_pred HHHHHHHHHCCCeEEecC
Confidence 999999999999999998
No 15
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=100.00 E-value=4.8e-40 Score=330.12 Aligned_cols=217 Identities=50% Similarity=0.904 Sum_probs=191.4
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCC-CCcCCCCCCCCEEE
Q 008647 334 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS-NFKLPANPSVPIIM 412 (558)
Q Consensus 334 ~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g-~F~lp~~~~~plil 412 (558)
.+|+|||+|.|....+.++|+|+.+.++.+.+..+.|.+|.||+++++| +.|.+.+|.| .|.++.+..+|+||
T Consensus 47 ~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~lk~G------d~v~v~~p~G~~f~l~~~~~~~~vl 120 (267)
T cd06182 47 QPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQLG------AKVTVFIRPAPSFRLPKDPTTPIIM 120 (267)
T ss_pred CCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhhCCCC------CEEEEEEecCCcccCCCCCCCCEEE
Confidence 4599999999965468999999988765555556679999999999999 8999999999 99998766789999
Q ss_pred EccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCC-CCccccHHHHHHHHHcCCccEEEEEEecCCCC-ccchhhh
Q 008647 413 VGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNR-RMDFIYEDELNNFEEEGVISELILAFSREGSQ-KEYVQHK 490 (558)
Q Consensus 413 Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~-~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~~-k~yvq~~ 490 (558)
||+|||||||+||+++++....++...++++||||+|+. + |++|.++|++|++.+.++++++++||++.. ++||++.
T Consensus 121 IAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~-d~~~~del~~~~~~~~~~~~~~~~S~~~~~~~~~v~~~ 199 (267)
T cd06182 121 VGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFAS-DYLYREELQEALKDGALTRLDVAFSREQAEPKVYVQDK 199 (267)
T ss_pred EecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcc-cccHHHHHHHHHhCCCcceEEEEEccCCCCCceehHHH
Confidence 999999999999999987632112245789999999999 7 999999999999988888999999997653 7899999
Q ss_pred hHhcHHHHHHhhhCCCEEEEeCCCcc-hHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 491 MMDKAAQLWSLLSKEGYLYVCGDAKG-MARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 491 l~~~~~~l~~~~~~~~~iyvCGp~~~-M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
+.+..+.+.+++.+++.||+||| +. |+++|.+.|.+++.++++++.++|++++++|+++|||++|+|
T Consensus 200 l~~~~~~l~~~l~~~~~vyvCGp-~~~m~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (267)
T cd06182 200 LKEHAEELRRLLNEGAHIYVCGD-AKSMAKDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRYVEDVW 267 (267)
T ss_pred HHHhHHHHHHHHhcCCEEEEECC-cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeEEecC
Confidence 88777777776666779999999 88 999999999999999999999999999999999999999999
No 16
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=100.00 E-value=1.3e-36 Score=321.95 Aligned_cols=269 Identities=24% Similarity=0.442 Sum_probs=219.5
Q ss_pred CCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCC
Q 008647 153 FDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNED 232 (558)
Q Consensus 153 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~ 232 (558)
|..++|+.++|+.+++++..+...+++||+|+.++....|+||..+.|.++...
T Consensus 137 ~~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~-------------------------- 190 (411)
T TIGR03224 137 YGVKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTD-------------------------- 190 (411)
T ss_pred ccCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcC--------------------------
Confidence 678889999999999999877677999999998765688999999999654210
Q ss_pred CCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHH
Q 008647 233 GTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVM 312 (558)
Q Consensus 233 ~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l 312 (558)
.+|
T Consensus 191 ----------------------------------------------------------~~g------------------- 193 (411)
T TIGR03224 191 ----------------------------------------------------------ASG------------------- 193 (411)
T ss_pred ----------------------------------------------------------cCC-------------------
Confidence 000
Q ss_pred HhCCCCCCChhHHHHhhCCCCCCcccccCCCCCCC---CCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCcc
Q 008647 313 AEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFA---PDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCS 389 (558)
Q Consensus 313 ~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~---~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~ 389 (558)
.+...|+|||+|+|... .+.++|+|+++.. ...++.+.|.+|+||+++++| +
T Consensus 194 ------------------~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v~~-~~~g~~~~G~~S~~L~~lk~G------d 248 (411)
T TIGR03224 194 ------------------KPHYARMYSVASPRNGERPGYNNLALTVKRVTT-DHQGNAVRGVASNYLCDLKKG------D 248 (411)
T ss_pred ------------------CcCcceeeeecCCCCccCCCCCEEEEEEEEEEe-cCCCCcCcccchhHHhcCCCc------C
Confidence 12356999999987421 1479999998863 334566679999999999999 8
Q ss_pred EEEEEeeCCC-CcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcC
Q 008647 390 WAPIFIRPSN-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG 468 (558)
Q Consensus 390 ~v~v~~p~g~-F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~ 468 (558)
.|.+.+|.|. |.++....+|+||||+|||||||+||++++......+ ..++++||||+|+.+ |++|.+||++|.+..
T Consensus 249 ~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~-~~~~v~L~~G~Rt~~-dl~y~~eL~~l~~~~ 326 (411)
T TIGR03224 249 KVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHG-EGGKLMLFFGARTKE-ELPYFGPLQKLPKDF 326 (411)
T ss_pred EEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcC-CCCCEEEEEecCccc-cchHHHHHHHHHhcC
Confidence 9999999995 7776555689999999999999999999887532222 467999999999999 999999999998765
Q ss_pred CccEEEEEEecCCC-CccchhhhhHhcHHHHHHhhh-CCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Q 008647 469 VISELILAFSREGS-QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKK 546 (558)
Q Consensus 469 ~~~~~~~a~Sr~~~-~k~yvq~~l~~~~~~l~~~~~-~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~ 546 (558)
. ++++++||++. .++|||+.+.+..+.+.+++. .++.||+||| ++|+++|.+.|.++..+. ++. +++++.+
T Consensus 327 ~--~~~~~~sr~~~~~~g~V~d~l~~~~~~v~~ll~~~~~~vYiCGp-~~M~~~v~~~L~~~~~~~-~~~---~~~~~~~ 399 (411)
T TIGR03224 327 I--DINFAFSRTPEQPKRYVQDAIRERAADVAALLKDPNTYIYICGL-KGMEEGVLDAFRDVCATN-GLS---WETLEPR 399 (411)
T ss_pred c--eEEEEeccCCccCcccHhhHHHHhHHHHHHHHhcCCcEEEEECC-HHHHHHHHHHHHHHHHHc-CcC---HHHHHHH
Confidence 3 46779998654 589999999988777777665 4589999999 899999999999999654 343 5789999
Q ss_pred HHHCCCeEEeeC
Q 008647 547 FQMEGRYLRDVW 558 (558)
Q Consensus 547 l~~~~Ry~~dvw 558 (558)
|+++|||+.|+|
T Consensus 400 l~~~~r~~~e~~ 411 (411)
T TIGR03224 400 LRAEGRLHLETY 411 (411)
T ss_pred HHHCCCeEEecC
Confidence 999999999999
No 17
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=100.00 E-value=1.3e-36 Score=311.53 Aligned_cols=273 Identities=26% Similarity=0.407 Sum_probs=215.8
Q ss_pred CCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCCC
Q 008647 154 DIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDG 233 (558)
Q Consensus 154 ~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~ 233 (558)
....++.++|+..+.++.+.+..++++|+|+.+. .+.|+||..+.|.++... .
T Consensus 20 ~~~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~~-~~~f~aGQy~~l~~~~~~--~------------------------ 72 (307)
T PLN03116 20 KPKAPYTATIVSVERIVGPKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGTN--P------------------------ 72 (307)
T ss_pred cCCCCEEEEEEeeEEcccCCCCCceEEEEEecCC-CCceecCceEeeeCCCCC--h------------------------
Confidence 3566788999999999977766789999999774 689999999998654210 0
Q ss_pred CCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHHH
Q 008647 234 TPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMA 313 (558)
Q Consensus 234 ~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~ 313 (558)
. ..|
T Consensus 73 ~--------------------------------------------------------~~g-------------------- 76 (307)
T PLN03116 73 K--------------------------------------------------------KPG-------------------- 76 (307)
T ss_pred h--------------------------------------------------------hcC--------------------
Confidence 0 000
Q ss_pred hCCCCCCChhHHHHhhCCCCCCcccccCCCCCCC---CCeEEEEEEEEEccCCCCC----cccCcccHHhhhcCCCCCCC
Q 008647 314 EFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFA---PDRVHVTCALVYGPTPTGR----IHKGVCSTWMKNAIPLEGNG 386 (558)
Q Consensus 314 ~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~---~~~i~l~v~vv~~~~~~~~----~~~G~~S~~L~~l~~G~~~~ 386 (558)
.+...|+|||||+|... ...++|+|+++.+.++... ...|.+|+||+++++|
T Consensus 77 -----------------~~~~~R~YSIaS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~G---- 135 (307)
T PLN03116 77 -----------------APHNVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPG---- 135 (307)
T ss_pred -----------------CcCCceeEEecCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCC----
Confidence 12246999999999532 2379999998765443211 1579999999999999
Q ss_pred CccEEEEEeeCCCCcC-CC-CCCCCEEEEccCccccchHHHHHHHHHHhhc-CCCCCCeEEEEeccCCCCccccHHHHHH
Q 008647 387 DCSWAPIFIRPSNFKL-PA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQD-GAQLGPALLFFGCRNRRMDFIYEDELNN 463 (558)
Q Consensus 387 ~~~~v~v~~p~g~F~l-p~-~~~~plilIa~GtGIAP~~s~l~~~~~~~~~-~~~~~~i~L~~G~R~~~~d~~y~~el~~ 463 (558)
+.|.|.+|.|.|.+ +. +..+|+||||+|||||||+||+++++..... ....++++||||+|+.+ |++|.+||++
T Consensus 136 --d~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~-d~~~~deL~~ 212 (307)
T PLN03116 136 --DKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSD-SLLYDDEFER 212 (307)
T ss_pred --CEEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcc-cchHHHHHHH
Confidence 89999999998776 43 4457999999999999999999987652110 01236899999999998 9999999999
Q ss_pred HHHcCC-ccEEEEEEecCCC----CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHH
Q 008647 464 FEEEGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSS 538 (558)
Q Consensus 464 ~~~~~~-~~~~~~a~Sr~~~----~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~ 538 (558)
|++.+. +++++.++||++. .++||++.|.+..+.++..+..++.||+||| +.|++++.+.|.+++.+. +++
T Consensus 213 l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~l~~~~~~~~~~~~~~~~vYiCGp-~~mv~~v~~~L~~~~~~~-g~~-- 288 (307)
T PLN03116 213 YLKDYPDNFRYDYALSREQKNKKGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGL-KGMMPGIQDTLKRVAEER-GES-- 288 (307)
T ss_pred HHHhCCCcEEEEEEEccCCcccCCCccchhhHHHHHHHHHHhhhcCCcEEEEeCC-HHHHHHHHHHHHHHHHHc-Ccc--
Confidence 998875 6789999999764 3679999888766665555556789999999 899999999999987764 453
Q ss_pred HHHHHHHHHHHCCCeEEeeC
Q 008647 539 KAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 539 ~a~~~~~~l~~~~Ry~~dvw 558 (558)
|.++++.|+++|||++|+|
T Consensus 289 -~~~~~~~l~~~~r~~~~~~ 307 (307)
T PLN03116 289 -WEEKLSGLKKNKQWHVEVY 307 (307)
T ss_pred -HHHHHHHHHHcCceEEecC
Confidence 6789999999999999999
No 18
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=100.00 E-value=6.4e-36 Score=303.72 Aligned_cols=213 Identities=31% Similarity=0.494 Sum_probs=175.6
Q ss_pred CCCcccccCCCCCC---CCCeEEEEEEEEEccCCCC-CcccCcccHHhhhcCCCCCCCCccEEEEEeeCCCCcCC-CCCC
Q 008647 333 LQPRYYSISSSPRF---APDRVHVTCALVYGPTPTG-RIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLP-ANPS 407 (558)
Q Consensus 333 ~~pR~YSIaS~p~~---~~~~i~l~v~vv~~~~~~~-~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F~lp-~~~~ 407 (558)
...|+|||||.|.. +++.++|+|+++.+.++.+ ..+.|.+|+||+++++| +.|.+.+|.|.|.+. .+..
T Consensus 62 ~~~R~YSIas~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~gP~G~~~~~~~~~~ 135 (286)
T cd06208 62 HKLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPG------DDVQITGPVGKTMLLPEDPN 135 (286)
T ss_pred CCceeeEecCCccccCCCCCEEEEEEEEEEEecCCCCceeccchHHHHhhCCCC------CEEEEEeecCCcccCCCCCC
Confidence 45799999999853 2468999999987644432 34559999999999999 899999999976554 3445
Q ss_pred CCEEEEccCccccchHHHHHHHHHHhhc-CCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC-ccEEEEEEecCCC---
Q 008647 408 VPIIMVGPGTGLAPFRGFLQERMALKQD-GAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV-ISELILAFSREGS--- 482 (558)
Q Consensus 408 ~plilIa~GtGIAP~~s~l~~~~~~~~~-~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~-~~~~~~a~Sr~~~--- 482 (558)
+|+||||+|||||||+||++++...... ....++++|+||+|+.+ |++|.++|++++++.. ++++++++||++.
T Consensus 136 ~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~~sr~~~~~~ 214 (286)
T cd06208 136 ATLIMIATGTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNSD-SLLYDDELEKYPKQYPDNFRIDYAFSREQKNAD 214 (286)
T ss_pred CCEEEEecCccHHHHHHHHHHHHHhhhcccCCCCCEEEEEEecCcc-chhHHHHHHHHHHhCCCcEEEEEEEcCCCCCCC
Confidence 7999999999999999999998763100 11346899999999999 9999999999998754 6789999998754
Q ss_pred -CccchhhhhHhcHHHHHHhhhC-CCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 483 -QKEYVQHKMMDKAAQLWSLLSK-EGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 483 -~k~yvq~~l~~~~~~l~~~~~~-~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
.++||++.+.+..+.+++.+.. ++.||+||| ++|+++|.+.|.+++. ...+|.+++++|+++|||+.|+|
T Consensus 215 g~~g~v~~~i~~~~~~l~~~l~~~~~~vYiCGp-~~m~~~v~~~L~~~~~-----~~~~~~~~~~~~~~~gr~~~~~~ 286 (286)
T cd06208 215 GGKMYVQDRIAEYAEEIWNLLDKDNTHVYICGL-KGMEPGVDDALTSVAE-----GGLAWEEFWESLKKKGRWHVEVY 286 (286)
T ss_pred CCceehhhHHHHhHHHHHHHHhcCCcEEEEeCC-chHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHcCCeEEecC
Confidence 4689999998877777766653 469999999 8999999999999986 23578999999999999999999
No 19
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=100.00 E-value=5.7e-36 Score=304.13 Aligned_cols=189 Identities=32% Similarity=0.634 Sum_probs=162.2
Q ss_pred CcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEe-eCCCCcCCCCCCCCEEEE
Q 008647 335 PRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI-RPSNFKLPANPSVPIIMV 413 (558)
Q Consensus 335 pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~-p~g~F~lp~~~~~plilI 413 (558)
+|+|||+|+|. ++.++|+|+.+ ..|.+|+||+++++| +.|.+.+ |.|.|.++ +..+|+|||
T Consensus 100 ~R~YSias~p~--~g~l~l~Vk~~---------~~G~~S~~L~~l~~G------d~v~v~~~~~g~F~~~-~~~~~lvlI 161 (289)
T cd06201 100 PRFYSLASSSS--DGFLEICVRKH---------PGGLCSGYLHGLKPG------DTIKAFIRPNPSFRPA-KGAAPVILI 161 (289)
T ss_pred CceEecCCCCC--CCeEEEEEEeC---------CCccchhhHhhCCCc------CEEEEEeccCCCccCC-CCCCCEEEE
Confidence 59999999984 57899999853 259999999999999 8999986 56799886 346899999
Q ss_pred ccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCCCccchhhhhHh
Q 008647 414 GPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMD 493 (558)
Q Consensus 414 a~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~~k~yvq~~l~~ 493 (558)
|+|||||||+||+++.. ..++++|+||+|+.+.|++|++||++|++.+.+++++.++||++ .++||++.+..
T Consensus 162 AgGtGIaP~~s~l~~~~-------~~~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~~~~~~~s~~~-~~g~v~~~l~~ 233 (289)
T cd06201 162 GAGTGIAPLAGFIRANA-------ARRPMHLYWGGRDPASDFLYEDELDQYLADGRLTQLHTAFSRTP-DGAYVQDRLRA 233 (289)
T ss_pred ecCcCHHHHHHHHHhhh-------ccCCEEEEEEecCcccchHHHHHHHHHHHcCCCceEEEEECCCC-CcccchhHHHH
Confidence 99999999999998752 34689999999998448999999999999888888899999875 47899999887
Q ss_pred cHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 494 KAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 494 ~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
..+.+..++.+++.||+||| ++|+++|.+.|.+|+.+++ .-+..|+++|||.+|||
T Consensus 234 ~~~~l~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~~--------~~~~~~~~~g~~~~d~y 289 (289)
T cd06201 234 DAERLRRLIEDGAQIMVCGS-RAMAQGVAAVLEEILAPQP--------LSLDELKLQGRYAEDVY 289 (289)
T ss_pred hHHHHHHHHHCCcEEEEECC-HHHHHHHHHHHHHHHHHcC--------cCHHHHHHCCCEEeecC
Confidence 77666666667899999999 8999999999999996543 22899999999999998
No 20
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=100.00 E-value=1.8e-36 Score=300.97 Aligned_cols=212 Identities=33% Similarity=0.509 Sum_probs=179.7
Q ss_pred CCCChhHHHHhhCCC-CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEe
Q 008647 318 ATPPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 318 ~~~~~~~~l~~~~p~-~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~ 395 (558)
..+.+|||+.+.++. ..+|+|||||+|. ++.++|+|+.+... +.+.|.+|+||++ +++| +.|.+.+
T Consensus 30 ~~f~pGQ~v~l~~~~~~~~R~YSIas~p~--~~~l~l~Vk~~~~~----~~~~G~~S~~L~~~~~~G------d~v~i~g 97 (245)
T cd06200 30 AQWQAGDIAEIGPRHPLPHREYSIASLPA--DGALELLVRQVRHA----DGGLGLGSGWLTRHAPIG------ASVALRL 97 (245)
T ss_pred CCccCCcEEEecCCCCCCCcceEeccCCC--CCEEEEEEEEeccC----CCCCeeechhhhhCCCCC------CEEEEEe
Confidence 456789999998442 5789999999985 47899999876421 1124999999998 5899 8999999
Q ss_pred eCC-CCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEE
Q 008647 396 RPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 474 (558)
Q Consensus 396 p~g-~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~ 474 (558)
|.| .|.++. ..+|+||||+|||||||+||++++.. . ..++++||||+|+.+.|++|.+||++|++.+.+++++
T Consensus 98 p~gg~F~~~~-~~~~~vlIAgGtGIaP~~s~l~~~~~---~--~~~~~~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~ 171 (245)
T cd06200 98 RENPGFHLPD-DGRPLILIGNGTGLAGLRSHLRARAR---A--GRHRNWLLFGERQAAHDFFCREELEAWQAAGHLARLD 171 (245)
T ss_pred cCCCcccCCC-CCCCEEEEecCcChHHHHHHHHHHHh---c--cCCCeEEEEecCCccccHhHHHHHHHHHHCCCcceEE
Confidence 865 888875 46899999999999999999999875 2 2367999999999844899999999999999988999
Q ss_pred EEEecCCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCc-chHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCe
Q 008647 475 LAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAK-GMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRY 553 (558)
Q Consensus 475 ~a~Sr~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~-~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry 553 (558)
+++|+++..++||++.+.++.+.+.+++..++.||+||| + +|+++|.+.|.+++.+ +.+++|+++|||
T Consensus 172 ~~~s~~~~~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp-~~~m~~~v~~~l~~~~~~----------~~~~~~~~~~r~ 240 (245)
T cd06200 172 LAFSRDQAQKRYVQDRLRAAADELRAWVAEGAAIYVCGS-LQGMAPGVDAVLDEILGE----------EAVEALLAAGRY 240 (245)
T ss_pred EEEccCCCCCcchHHHHHHhHHHHHHHHHCCcEEEEECC-chhhhHHHHHHHHHHHHH----------HHHHHHHHCCCe
Confidence 999998767899999998877777666666789999999 7 9999999999999963 348999999999
Q ss_pred EEeeC
Q 008647 554 LRDVW 558 (558)
Q Consensus 554 ~~dvw 558 (558)
++|+|
T Consensus 241 ~~d~~ 245 (245)
T cd06200 241 RRDVY 245 (245)
T ss_pred EEecC
Confidence 99999
No 21
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.95 E-value=3.9e-28 Score=246.47 Aligned_cols=181 Identities=17% Similarity=0.306 Sum_probs=141.3
Q ss_pred CcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCCCCcCCCCCCCCEEEEc
Q 008647 335 PRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVG 414 (558)
Q Consensus 335 pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F~lp~~~~~plilIa 414 (558)
.|+|||+|+|.. .+.++|+|++........+...|.+|+||+++++| +.|.|.+|.|.|.++. ..+|+||||
T Consensus 86 ~R~ySias~p~~-~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~i~gP~G~f~l~~-~~~~~vlIA 157 (283)
T cd06188 86 SRAYSLANYPAE-EGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPG------DKVTASGPFGEFFIKD-TDREMVFIG 157 (283)
T ss_pred ccccCcCCCCCC-CCeEEEEEEEeccCCccCCCCCceehhHHhcCCCC------CEEEEECccccccccC-CCCcEEEEE
Confidence 499999999964 57899999875422110023369999999999999 8999999999998863 457999999
Q ss_pred cCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCC------Cccchh
Q 008647 415 PGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS------QKEYVQ 488 (558)
Q Consensus 415 ~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~------~k~yvq 488 (558)
+|||||||+||+++++.. +....+++|+||+|+.+ |++|.+||+++++.+.++++++++|++.. .++||+
T Consensus 158 gGtGItP~~s~l~~~~~~---~~~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~G~v~ 233 (283)
T cd06188 158 GGAGMAPLRSHIFHLLKT---LKSKRKISFWYGARSLK-ELFYQEEFEALEKEFPNFKYHPVLSEPQPEDNWDGYTGFIH 233 (283)
T ss_pred ecccHhHHHHHHHHHHhc---CCCCceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEEEEECCCCccCCCCCcceeec
Confidence 999999999999987652 21246899999999998 99999999999988888888888887541 346777
Q ss_pred hhhHhcHHHHHHhh-hCCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 489 HKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 489 ~~l~~~~~~l~~~~-~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
+.+.+.. +.... ..+..||+||| ++|++++.+.|.+.+.
T Consensus 234 ~~~~~~~--~~~~~~~~~~~vyiCGP-~~m~~~~~~~l~~~Gv 273 (283)
T cd06188 234 QVLLENY--LKKHPAPEDIEFYLCGP-PPMNSAVIKMLDDLGV 273 (283)
T ss_pred HHHHHHH--hccCCCCCCeEEEEECC-HHHHHHHHHHHHHcCC
Confidence 7664432 10111 13568999999 8999999999987643
No 22
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.95 E-value=3.7e-28 Score=238.22 Aligned_cols=185 Identities=19% Similarity=0.295 Sum_probs=152.6
Q ss_pred CCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEee
Q 008647 318 ATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 396 (558)
Q Consensus 318 ~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~p 396 (558)
....+|||+.+.+|....|+|||+|.|.. .+.++|+|+.+. .|.+|++|.+ +++| +.|.+.+|
T Consensus 24 ~~~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~l~~~vk~~~---------~G~~s~~l~~~l~~G------~~v~i~gP 87 (224)
T cd06189 24 LDFLAGQYLDLLLDDGDKRPFSIASAPHE-DGEIELHIRAVP---------GGSFSDYVFEELKEN------GLVRIEGP 87 (224)
T ss_pred cccCCCCEEEEEcCCCCceeeecccCCCC-CCeEEEEEEecC---------CCccHHHHHHhccCC------CEEEEecC
Confidence 45679999999867667999999999864 578999998652 4899999986 9999 89999999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.|.++....+++||||+|||||||++|+++... ++ ...+++|+||+|+.+ |++|.+||+++++.+.+++++.+
T Consensus 88 ~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 162 (224)
T cd06189 88 LGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLA---QG-SKRPIHLYWGARTEE-DLYLDELLEAWAEAHPNFTYVPV 162 (224)
T ss_pred CccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHh---cC-CCCCEEEEEecCChh-hccCHHHHHHHHHhCCCeEEEEE
Confidence 99988876556899999999999999999999876 22 357899999999998 99999999999998888888889
Q ss_pred EecCCC----CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 477 FSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 477 ~Sr~~~----~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+|++++ ..+|+++.+.+... -..+..+|+||| ++|++++.+.|.+.+
T Consensus 163 ~s~~~~~~~g~~g~v~~~l~~~~~-----~~~~~~v~vCGp-~~m~~~~~~~l~~~G 213 (224)
T cd06189 163 LSEPEEGWQGRTGLVHEAVLEDFP-----DLSDFDVYACGS-PEMVYAARDDFVEKG 213 (224)
T ss_pred eCCCCcCCccccccHHHHHHhhcc-----CccccEEEEECC-HHHHHHHHHHHHHcC
Confidence 998643 34677665543211 014678999999 899999999997654
No 23
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.95 E-value=8.8e-28 Score=234.77 Aligned_cols=188 Identities=28% Similarity=0.446 Sum_probs=150.9
Q ss_pred CCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEe
Q 008647 319 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 319 ~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~ 395 (558)
...+|||+.+.+|. ...|+|||+|.|.. .+.++|+|+++. .|.+|+||+++++| +.+.+.+
T Consensus 22 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~l~vk~~~---------~G~~s~~l~~~~~G------~~v~i~g 85 (223)
T cd00322 22 SFKPGQYVDLHLPGDGRGLRRAYSIASSPDE-EGELELTVKIVP---------GGPFSAWLHDLKPG------DEVEVSG 85 (223)
T ss_pred CcCCCcEEEEEecCCCCcceeeeeccCCCCC-CCeEEEEEEEeC---------CCchhhHHhcCCCC------CEEEEEC
Confidence 45789999998664 57899999999864 478999999653 49999999999999 8999999
Q ss_pred eCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEE
Q 008647 396 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 475 (558)
Q Consensus 396 p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~ 475 (558)
|.|.|.++....+++||||+|||||||++|++++... + ..++++|+||+|+.+ |++|.+||+++++.+.++++++
T Consensus 86 P~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 160 (223)
T cd00322 86 PGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAAD---K-PGGEITLLYGARTPA-DLLFLDELEELAKEGPNFRLVL 160 (223)
T ss_pred CCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhh---C-CCCcEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEE
Confidence 9998866555678999999999999999999998762 1 467899999999999 9999999999999888888999
Q ss_pred EEecCCCCccchhhhhHhcHHHHHH-h-hhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 476 AFSREGSQKEYVQHKMMDKAAQLWS-L-LSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 476 a~Sr~~~~k~yvq~~l~~~~~~l~~-~-~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
++++++....+.++.+... ..+.. . ...+..+|+||| ++|++.+++.|.+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~yvCGp-~~m~~~~~~~L~~~g 214 (223)
T cd00322 161 ALSRESEAKLGPGGRIDRE-AEILALLPDDSGALVYICGP-PAMAKAVREALVSLG 214 (223)
T ss_pred EecCCCCCCCcccceeeHH-HHHHhhcccccCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 9998765433333222211 11111 1 124689999999 899999999987754
No 24
>PRK08051 fre FMN reductase; Validated
Probab=99.95 E-value=7.7e-28 Score=237.26 Aligned_cols=186 Identities=17% Similarity=0.214 Sum_probs=147.8
Q ss_pred CCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHh-hhcCCCCCCCCccEEEEEee
Q 008647 318 ATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWM-KNAIPLEGNGDCSWAPIFIR 396 (558)
Q Consensus 318 ~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L-~~l~~G~~~~~~~~v~v~~p 396 (558)
....+|||+.+.+|....|+|||+|.|.. ++.++|+|+.+. .|..|.++ .++++| +.|.+.+|
T Consensus 28 ~~~~pGQ~v~l~~~~~~~r~ySias~p~~-~~~l~~~v~~~~---------~~~~~~~~~~~l~~G------~~v~v~gP 91 (232)
T PRK08051 28 FSFRAGQYLMVVMGEKDKRPFSIASTPRE-KGFIELHIGASE---------LNLYAMAVMERILKD------GEIEVDIP 91 (232)
T ss_pred CccCCCCEEEEEcCCCcceeecccCCCCC-CCcEEEEEEEcC---------CCcchHHHHHHcCCC------CEEEEEcC
Confidence 34678999999867777899999999864 578999998643 25555555 569999 89999999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.|.++.+..+|+||||+||||||+++|++++.. .+ ...+++|+||+|+.+ |.+|.+||+++++.+.+++++.+
T Consensus 92 ~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~---~~-~~~~v~l~~g~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 166 (232)
T PRK08051 92 HGDAWLREESERPLLLIAGGTGFSYARSILLTALA---QG-PNRPITLYWGGREED-HLYDLDELEALALKHPNLHFVPV 166 (232)
T ss_pred CCceEccCCCCCcEEEEecCcCcchHHHHHHHHHH---hC-CCCcEEEEEEeccHH-HhhhhHHHHHHHHHCCCcEEEEE
Confidence 99888765556899999999999999999999876 22 457899999999999 99999999999998888889998
Q ss_pred EecCCC----CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHH-HHHHH
Q 008647 477 FSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTL-HTIVQ 530 (558)
Q Consensus 477 ~Sr~~~----~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L-~~i~~ 530 (558)
+|++++ .++++++.+.+.... ..+..||+||| ++|+++|.+.| .+.+.
T Consensus 167 ~~~~~~~~~~~~g~v~~~l~~~~~~-----~~~~~vyicGp-~~m~~~v~~~l~~~~G~ 219 (232)
T PRK08051 167 VEQPEEGWQGKTGTVLTAVMQDFGS-----LAEYDIYIAGR-FEMAKIARELFCRERGA 219 (232)
T ss_pred eCCCCCCcccceeeehHHHHhhccC-----cccCEEEEECC-HHHHHHHHHHHHHHcCC
Confidence 887653 356666655332100 13468999999 89999999988 66543
No 25
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.95 E-value=1.3e-27 Score=236.60 Aligned_cols=186 Identities=24% Similarity=0.331 Sum_probs=150.7
Q ss_pred CCChhHHHHhhCCCC-CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEEEEee
Q 008647 319 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIR 396 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~-~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~-~l~~G~~~~~~~~v~v~~p 396 (558)
.+.+|||+.+.+|.. ..|+|||+|.|.. .+.++|+|++++ .|.+|+||+ .+++| +.|.|.+|
T Consensus 35 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~i~~~~---------~G~~s~~l~~~l~~G------~~v~i~gP 98 (238)
T cd06211 35 EFQAGQYVNLQAPGYEGTRAFSIASSPSD-AGEIELHIRLVP---------GGIATTYVHKQLKEG------DELEISGP 98 (238)
T ss_pred ccCCCCeEEEEcCCCCCccccccCCCCCC-CCEEEEEEEECC---------CCcchhhHhhcCCCC------CEEEEECC
Confidence 467999999986655 5899999999864 578999998653 599999997 59999 89999999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.|.++.+..+++||||+|||||||++++++... ++ ...+++|+||+|+.+ |++|.++|+++++...+++++.+
T Consensus 99 ~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 173 (238)
T cd06211 99 YGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLE---RG-DTRKITLFFGARTRA-ELYYLDEFEALEKDHPNFKYVPA 173 (238)
T ss_pred ccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHh---cC-CCCcEEEEEecCChh-hhccHHHHHHHHHhCCCeEEEEE
Confidence 99988875555899999999999999999999875 22 346899999999999 99999999999988777888889
Q ss_pred EecCCC------CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 477 FSREGS------QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 477 ~Sr~~~------~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
+||+.. .++++++.+.+.... ..++..+|+||| ++|++++.+.|.+.+.
T Consensus 174 ~s~~~~~~~~~~~~g~v~~~l~~~~~~----~~~~~~vyvCGp-~~m~~~~~~~L~~~Gv 228 (238)
T cd06211 174 LSREPPESNWKGFTGFVHDAAKKHFKN----DFRGHKAYLCGP-PPMIDACIKTLMQGRL 228 (238)
T ss_pred ECCCCCCcCcccccCcHHHHHHHhccc----ccccCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 998642 245666654432110 013579999999 8999999999987543
No 26
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.95 E-value=1.2e-27 Score=249.07 Aligned_cols=184 Identities=18% Similarity=0.269 Sum_probs=151.1
Q ss_pred CCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEeeC
Q 008647 319 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRP 397 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~p~ 397 (558)
.+.+|||+.+.+|....|+|||+|.|.. .+.++|+|+.+. .|.+|+||++ +++| +.|.+.+|.
T Consensus 131 ~~~pGQfv~l~~~~~~~R~ySias~p~~-~~~l~~~ik~~~---------~G~~s~~l~~~l~~G------~~v~v~gP~ 194 (339)
T PRK07609 131 QYLAGQYIEFILKDGKRRSYSIANAPHS-GGPLELHIRHMP---------GGVFTDHVFGALKER------DILRIEGPL 194 (339)
T ss_pred ccCCCCeEEEECCCCceeeeecCCCCCC-CCEEEEEEEecC---------CCccHHHHHHhccCC------CEEEEEcCc
Confidence 4578999999867667899999999864 578999998653 5999999975 9999 899999999
Q ss_pred CCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEE
Q 008647 398 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 477 (558)
Q Consensus 398 g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~ 477 (558)
|.|.++....+|+||||+|||||||+||++++.. .+ ..++++||||+|+.+ |+++.++|++|+++..+++++.++
T Consensus 195 G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~---~~-~~~~i~l~~g~r~~~-dl~~~e~l~~~~~~~~~~~~~~~~ 269 (339)
T PRK07609 195 GTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRA---KG-IQRPVTLYWGARRPE-DLYLSALAEQWAEELPNFRYVPVV 269 (339)
T ss_pred eeEEecCCCCCCEEEEecCcChhHHHHHHHHHHh---cC-CCCcEEEEEecCChH-HhccHHHHHHHHHhCCCeEEEEEe
Confidence 9999876566899999999999999999999876 22 456899999999999 999999999999888788899999
Q ss_pred ecCCC------CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 478 SREGS------QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 478 Sr~~~------~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
||+.. .++++++.+.+.... ..+..+|+||| ++|++++.+.|.+.+
T Consensus 270 s~~~~~~~~~g~~G~v~~~~~~~~~~-----~~~~~vy~CGp-~~m~~~~~~~l~~~G 321 (339)
T PRK07609 270 SDALDDDAWTGRTGFVHQAVLEDFPD-----LSGHQVYACGS-PVMVYAARDDFVAAG 321 (339)
T ss_pred cCCCCCCCccCccCcHHHHHHhhccc-----ccCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 98421 356777665432211 13579999999 899999999887644
No 27
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.95 E-value=2.2e-27 Score=236.21 Aligned_cols=187 Identities=18% Similarity=0.202 Sum_probs=144.8
Q ss_pred CCChhHHHHhhCC--C-CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEe
Q 008647 319 TPPIGVFFAAVAP--H-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 319 ~~~~~~~l~~~~p--~-~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~ 395 (558)
.+.+|||+.+.++ . ...|+|||+|+|. .+.++|+|+.++ .|.+|+||+++++| +.|.+.+
T Consensus 30 ~~~pGQfv~l~~~~~g~~~~R~ySias~p~--~~~l~~~ik~~~---------~G~~S~~L~~l~~G------d~v~i~g 92 (248)
T PRK10926 30 PFTAGQFTKLGLEIDGERVQRAYSYVNAPD--NPDLEFYLVTVP---------EGKLSPRLAALKPG------DEVQVVS 92 (248)
T ss_pred CCCCCCEEEEEEecCCcEEEeeecccCCCC--CCeEEEEEEEeC---------CCCcChHHHhCCCC------CEEEEec
Confidence 4578999888643 2 2469999999985 358999998663 59999999999999 8999999
Q ss_pred eC-CCCcCCCC-CCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcC-CccE
Q 008647 396 RP-SNFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG-VISE 472 (558)
Q Consensus 396 p~-g~F~lp~~-~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~-~~~~ 472 (558)
|. |.|.++.. ..+|+||||+|||||||+||++++.. .+ ..++++|+||+|+.+ |++|++||++|++.. ..++
T Consensus 93 p~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~---~~-~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~ 167 (248)
T PRK10926 93 EAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKD---LE-RFKNLVLVHAARYAA-DLSYLPLMQELEQRYEGKLR 167 (248)
T ss_pred CCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHh---hC-CCCcEEEEEeCCcHH-HHHHHHHHHHHHHhCcCCEE
Confidence 87 46666643 34799999999999999999998764 22 457899999999998 999999999998875 4678
Q ss_pred EEEEEecCCC---CccchhhhhHhc-HHHHHH-hh-hCCCEEEEeCCCcchHHHHHHHHHHH
Q 008647 473 LILAFSREGS---QKEYVQHKMMDK-AAQLWS-LL-SKEGYLYVCGDAKGMARDVHRTLHTI 528 (558)
Q Consensus 473 ~~~a~Sr~~~---~k~yvq~~l~~~-~~~l~~-~~-~~~~~iyvCGp~~~M~~~v~~~L~~i 528 (558)
++.++||++. .++++++.+.+. ...... .+ .+++.+|+||| ++|++++.+.|.+.
T Consensus 168 v~~~~s~~~~~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp-~~Mv~~~~~~l~~~ 228 (248)
T PRK10926 168 IQTVVSRETAPGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGN-PQMVRDTQQLLKET 228 (248)
T ss_pred EEEEECCCCCCCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECC-HHHHHHHHHHHHHh
Confidence 9999998653 246776655332 111111 11 24578999999 89999999888754
No 28
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.95 E-value=3e-27 Score=234.44 Aligned_cols=190 Identities=19% Similarity=0.256 Sum_probs=151.9
Q ss_pred CCChhHHHHhhCCCC----CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEE
Q 008647 319 TPPIGVFFAAVAPHL----QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF 394 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~----~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~ 394 (558)
...+|||+.+.+|.. ..|+|||+|.|.. +.++|+|+++. .|.+|+||+++++| +.|.+.
T Consensus 24 ~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~--~~i~~~i~~~~---------~G~~s~~l~~l~~G------d~v~v~ 86 (241)
T cd06195 24 RFQAGQFTKLGLPNDDGKLVRRAYSIASAPYE--ENLEFYIILVP---------DGPLTPRLFKLKPG------DTIYVG 86 (241)
T ss_pred ccCCCCeEEEeccCCCCCeeeecccccCCCCC--CeEEEEEEEec---------CCCCchHHhcCCCC------CEEEEC
Confidence 457899999875543 5699999999853 78999998653 59999999999999 899999
Q ss_pred -eeCCCCcCCCC-CCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHc-CCcc
Q 008647 395 -IRPSNFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE-GVIS 471 (558)
Q Consensus 395 -~p~g~F~lp~~-~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~-~~~~ 471 (558)
+|.|.|.++.. ..+++||||+|||||||++|+++.... + ..++++|+||+|+.+ |++|.+||+++++. ..++
T Consensus 87 ~gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~---~-~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~ 161 (241)
T cd06195 87 KKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIW---E-RFDKIVLVHGVRYAE-ELAYQDEIEALAKQYNGKF 161 (241)
T ss_pred cCCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhh---C-CCCcEEEEEccCCHH-HhhhHHHHHHHHhhcCCCE
Confidence 99999988754 457999999999999999999998752 2 457899999999999 99999999999887 5677
Q ss_pred EEEEEEecCCCC---ccchhhhhHh-cHHHHHHh--hhCCCEEEEeCCCcchHHHHHHHHHHHHHH
Q 008647 472 ELILAFSREGSQ---KEYVQHKMMD-KAAQLWSL--LSKEGYLYVCGDAKGMARDVHRTLHTIVQE 531 (558)
Q Consensus 472 ~~~~a~Sr~~~~---k~yvq~~l~~-~~~~l~~~--~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~ 531 (558)
+++.++|+++.. ++|+++.+.. ........ ...+..||+||| ++|++++.+.|.+.+..
T Consensus 162 ~~~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~G~~ 226 (241)
T cd06195 162 RYVPIVSREKENGALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGN-PQMIDDTQELLKEKGFS 226 (241)
T ss_pred EEEEEECcCCccCCCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCC-HHHHHHHHHHHHHcCCC
Confidence 888889987653 5677776542 11111111 124579999999 89999999999876643
No 29
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.94 E-value=2.8e-27 Score=233.76 Aligned_cols=185 Identities=24% Similarity=0.321 Sum_probs=149.5
Q ss_pred CCChhHHHHhhCCC-CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEee
Q 008647 319 TPPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 396 (558)
Q Consensus 319 ~~~~~~~l~~~~p~-~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~p 396 (558)
.+.+|||+.+.+|. ...|+|||+|.|.. .+.++|+|+.+. .|.+|+||++ +++| +.|.|.+|
T Consensus 34 ~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~~~i~~~~---------~G~~s~~l~~~~~~G------d~v~i~gP 97 (236)
T cd06210 34 EFVPGQFVEIEIPGTDTRRSYSLANTPNW-DGRLEFLIRLLP---------GGAFSTYLETRAKVG------QRLNLRGP 97 (236)
T ss_pred CcCCCCEEEEEcCCCccceecccCCCCCC-CCEEEEEEEEcC---------CCccchhhhhCcCCC------CEEEEecC
Confidence 46789999987564 35799999999864 578999998642 4999999998 9999 89999999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.|.++....+++||||+|||||||++|++++.. .+ ...+++|+||+|+.+ |++|.++|+++++.+.+++++++
T Consensus 98 ~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 172 (236)
T cd06210 98 LGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAE---WG-EPQEARLFFGVNTEA-ELFYLDELKRLADSLPNLTVRIC 172 (236)
T ss_pred cceeeecCCCCccEEEEccCcchhHHHHHHHHHHh---cC-CCceEEEEEecCCHH-HhhhHHHHHHHHHhCCCeEEEEE
Confidence 99998876556799999999999999999999775 22 347899999999999 99999999999998888889999
Q ss_pred EecCCC----CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 477 FSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 477 ~Sr~~~----~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+|+++. ..+++++.+.+.... ......+|+||| ++|++++++.|.+.+
T Consensus 173 ~s~~~~~~~~~~g~~~~~l~~~l~~----~~~~~~vyicGp-~~m~~~~~~~l~~~G 224 (236)
T cd06210 173 VWRPGGEWEGYRGTVVDALREDLAS----SDAKPDIYLCGP-PGMVDAAFAAAREAG 224 (236)
T ss_pred EcCCCCCcCCccCcHHHHHHHhhcc----cCCCcEEEEeCC-HHHHHHHHHHHHHcC
Confidence 997543 345665544332111 113568999999 899999999887654
No 30
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.94 E-value=4.2e-27 Score=231.95 Aligned_cols=187 Identities=20% Similarity=0.171 Sum_probs=150.3
Q ss_pred CCChhHHHHhhCCCC-CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEee
Q 008647 319 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 396 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~-~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~p 396 (558)
.+.+|||+.+.+|.. .+|+|||+|.|.. .+.++|+|+.+. .|.+|.||++ +++| +.|.|.+|
T Consensus 23 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~~~~~vk~~~---------~G~~s~~l~~~~~~g------~~v~v~gP 86 (232)
T cd06190 23 DFLPGQYALLALPGVEGARAYSMANLANA-SGEWEFIIKRKP---------GGAASNALFDNLEPG------DELELDGP 86 (232)
T ss_pred ccCCCCEEEEECCCCCcccCccCCcCCCC-CCEEEEEEEEcC---------CCcchHHHhhcCCCC------CEEEEECC
Confidence 467899999986776 7899999999865 578999998542 5899999987 7999 89999999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.|.++.+..+++||||+|||||||++|++++.... .....+++|+||+|+.+ |++|.+||+++++.+..++++++
T Consensus 87 ~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~--~~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 163 (232)
T cd06190 87 YGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSP--YLSDRPVDLFYGGRTPS-DLCALDELSALVALGARLRVTPA 163 (232)
T ss_pred cccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcc--cCCCCeEEEEEeecCHH-HHhhHHHHHHHHHhCCCEEEEEE
Confidence 9988776555679999999999999999999987521 01357899999999999 99999999999998888888888
Q ss_pred EecCCC--------CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 477 FSREGS--------QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 477 ~Sr~~~--------~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+|+++. .++++++.+.+.... ...+..||+||| ++|++++.+.|.+..
T Consensus 164 ~s~~~~~~~~~~~~~~g~v~~~l~~~~~~----~~~~~~vyiCGp-~~m~~~v~~~l~~~g 219 (232)
T cd06190 164 VSDAGSGSAAGWDGPTGFVHEVVEATLGD----RLAEFEFYFAGP-PPMVDAVQRMLMIEG 219 (232)
T ss_pred eCCCCCCcCCCccCCcCcHHHHHHhhccC----CccccEEEEECC-HHHHHHHHHHHHHhC
Confidence 887643 134566554332111 123679999999 899999999887753
No 31
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.94 E-value=3.4e-27 Score=245.37 Aligned_cols=183 Identities=21% Similarity=0.313 Sum_probs=150.8
Q ss_pred CCChhHHHHhhCCCCC-CcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEee
Q 008647 319 TPPIGVFFAAVAPHLQ-PRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 396 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~~-pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~p 396 (558)
.+.+|||+.+.+|... .|+|||+|+|.. .+.++|+|+++. .|.+|+||++ +++| +.|.|.+|
T Consensus 136 ~~~pGQ~v~l~~~~~~~~R~ySias~p~~-~~~l~~~ik~~~---------~G~~s~~L~~~l~~G------~~v~i~gP 199 (340)
T PRK11872 136 DFLPGQYARLQIPGTDDWRSYSFANRPNA-TNQLQFLIRLLP---------DGVMSNYLRERCQVG------DEILFEAP 199 (340)
T ss_pred CcCCCCEEEEEeCCCCceeecccCCCCCC-CCeEEEEEEECC---------CCcchhhHhhCCCCC------CEEEEEcC
Confidence 4678999998766543 799999999864 578999999653 5899999975 9999 89999999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.|.++. ..+|+||||+|||||||+||++++.. .+ ..++++||||+|+.+ |++|.++|++|++...+++++.+
T Consensus 200 ~G~f~l~~-~~~~~vliagGtGiaP~~s~l~~~~~---~~-~~~~v~l~~g~r~~~-dl~~~~el~~~~~~~~~~~~~~~ 273 (340)
T PRK11872 200 LGAFYLRE-VERPLVFVAGGTGLSAFLGMLDELAE---QG-CSPPVHLYYGVRHAA-DLCELQRLAAYAERLPNFRYHPV 273 (340)
T ss_pred cceeEeCC-CCCcEEEEeCCcCccHHHHHHHHHHH---cC-CCCcEEEEEecCChH-HhccHHHHHHHHHHCCCcEEEEE
Confidence 99998864 35899999999999999999999875 22 346899999999999 99999999999998888899999
Q ss_pred EecCCC----CccchhhhhHhcHHHHHHhhh-CCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 477 FSREGS----QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 477 ~Sr~~~----~k~yvq~~l~~~~~~l~~~~~-~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
+|+++. .++++++.+.+.. +. ....||+||| ++|++++.+.|.+.+.
T Consensus 274 ~s~~~~~~~g~~g~v~~~l~~~~------l~~~~~~vy~CGp-~~mv~~~~~~L~~~Gv 325 (340)
T PRK11872 274 VSKASADWQGKRGYIHEHFDKAQ------LRDQAFDMYLCGP-PPMVEAVKQWLDEQAL 325 (340)
T ss_pred EeCCCCcCCCceeeccHHHHHhh------cCcCCCEEEEeCC-HHHHHHHHHHHHHcCC
Confidence 887543 3467776654321 22 3468999999 8999999999977653
No 32
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.94 E-value=4.3e-27 Score=230.48 Aligned_cols=185 Identities=20% Similarity=0.277 Sum_probs=151.0
Q ss_pred CCChhHHHHhhCCCCC--CcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEe
Q 008647 319 TPPIGVFFAAVAPHLQ--PRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~~--pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~ 395 (558)
...+|||+.+.+|... .|+|||+|.|.. .+.++|+|+... .|.+|+||++ +++| +.|.|.+
T Consensus 23 ~~~pGq~i~l~~~~~~~~~r~ysi~s~~~~-~~~~~~~i~~~~---------~G~~s~~l~~~l~~G------~~v~i~g 86 (224)
T cd06187 23 PFWAGQYVNVTVPGRPRTWRAYSPANPPNE-DGEIEFHVRAVP---------GGRVSNALHDELKVG------DRVRLSG 86 (224)
T ss_pred CcCCCceEEEEcCCCCCcceeccccCCCCC-CCEEEEEEEeCC---------CCcchHHHhhcCccC------CEEEEeC
Confidence 4568999999866543 799999999865 478999998542 5999999998 9999 8999999
Q ss_pred eCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEE
Q 008647 396 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 475 (558)
Q Consensus 396 p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~ 475 (558)
|.|.|.++.+..+++||||+|||||||+||++++.. ++ ...+++|+|++|+.+ |++|.++|+++++...+++++.
T Consensus 87 P~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~---~~-~~~~v~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 161 (224)
T cd06187 87 PYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALR---RG-EPRPVHLFFGARTER-DLYDLEGLLALAARHPWLRVVP 161 (224)
T ss_pred CccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHh---cC-CCCCEEEEEecCChh-hhcChHHHHHHHHhCCCeEEEE
Confidence 999988875546799999999999999999999875 22 457899999999999 9999999999998888888888
Q ss_pred EEecCCC----CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 476 AFSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 476 a~Sr~~~----~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
++++++. .++|+++.+.+... -..++.||+||| ++|++++.+.|.+.+.
T Consensus 162 ~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~v~vcGp-~~~~~~v~~~l~~~G~ 214 (224)
T cd06187 162 VVSHEEGAWTGRRGLVTDVVGRDGP-----DWADHDIYICGP-PAMVDATVDALLARGA 214 (224)
T ss_pred EeCCCCCccCCCcccHHHHHHHhcc-----ccccCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 8887643 35677776644221 014679999999 8999999999876543
No 33
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.94 E-value=5.9e-27 Score=249.45 Aligned_cols=181 Identities=17% Similarity=0.300 Sum_probs=144.1
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCCCCcCCCCCCCCEEEE
Q 008647 334 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMV 413 (558)
Q Consensus 334 ~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F~lp~~~~~plilI 413 (558)
..|+|||+|.|.. .+.++|+|+++.++...++...|.+|+||+++++| +.|.|.+|.|.|.++ +..+|+|||
T Consensus 209 ~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~gP~G~f~~~-~~~~~ivlI 280 (409)
T PRK05464 209 VIRAYSMANYPEE-KGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPG------DKVTISGPFGEFFAK-DTDAEMVFI 280 (409)
T ss_pred eeeeeccCCCCCC-CCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCC------CEEEEEccccCcEec-CCCceEEEE
Confidence 5799999999965 57899999986544333445579999999999999 899999999999876 356899999
Q ss_pred ccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCC------Cccch
Q 008647 414 GPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS------QKEYV 487 (558)
Q Consensus 414 a~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~------~k~yv 487 (558)
|+|||||||+||+++.+.. .....+++||||+|+.+ |++|.++|+++++...++++++++|++.. .++++
T Consensus 281 AgGtGIaP~~sml~~~l~~---~~~~~~v~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v 356 (409)
T PRK05464 281 GGGAGMAPMRSHIFDQLKR---LKSKRKISFWYGARSLR-EMFYVEDFDQLAAENPNFKWHVALSDPLPEDNWTGYTGFI 356 (409)
T ss_pred EeccChhHHHHHHHHHHhC---CCCCceEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCCCCCcccee
Confidence 9999999999999987652 11346899999999999 99999999999988888889999987532 34677
Q ss_pred hhhhHhcHHHHHHhh-hCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 488 QHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 488 q~~l~~~~~~l~~~~-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
++.+.+.. +.+.. ..+..||+||| ++|++++.+.|.+..
T Consensus 357 ~~~l~~~~--l~~~~~~~~~~vyiCGP-~~m~~av~~~L~~~G 396 (409)
T PRK05464 357 HNVLYENY--LKDHEAPEDCEYYMCGP-PMMNAAVIKMLKDLG 396 (409)
T ss_pred CHHHHHhh--hhhcCCCCCeEEEEECC-HHHHHHHHHHHHHcC
Confidence 76654321 11111 13579999999 899999999987654
No 34
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.94 E-value=8.1e-27 Score=242.05 Aligned_cols=187 Identities=14% Similarity=0.251 Sum_probs=148.1
Q ss_pred CCChhHHHHhhCCCC--CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEEEEe
Q 008647 319 TPPIGVFFAAVAPHL--QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~--~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~-~l~~G~~~~~~~~v~v~~ 395 (558)
.+.+|||+.+.++.. ..|+|||+|.|.. .+.++|+|+.+. .|.+|+||+ ++++| +.|.+.+
T Consensus 36 ~f~pGQfv~l~~~~~~~~~R~ySias~p~~-~~~l~i~Vk~~~---------~G~~S~~L~~~l~~G------d~v~v~g 99 (332)
T PRK10684 36 PYRAGQYALVSIRNSAETLRAYTLSSTPGV-SEFITLTVRRID---------DGVGSQWLTRDVKRG------DYLWLSD 99 (332)
T ss_pred CcCCCCEEEEEecCCCEeeeeecccCCCCC-CCcEEEEEEEcC---------CCcchhHHHhcCCCC------CEEEEeC
Confidence 457899999875532 4699999999864 468999999653 599999997 59999 8999999
Q ss_pred eCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEE
Q 008647 396 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 475 (558)
Q Consensus 396 p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~ 475 (558)
|.|.|.++....+++||||+|||||||+||+++.+. .+ ...+++|+||+|+.+ |++|.+||+++++....+++++
T Consensus 100 P~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~---~~-~~~~v~l~y~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 174 (332)
T PRK10684 100 AMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLK---NR-PQADVQVIFNVRTPQ-DVIFADEWRQLKQRYPQLNLTL 174 (332)
T ss_pred CccccccCCCCCCcEEEEecCcCcchHHHHHHHHHh---cC-CCCCEEEEEeCCChH-HhhhHHHHHHHHHHCCCeEEEE
Confidence 999999876556799999999999999999998765 22 457899999999999 9999999999998877767777
Q ss_pred EEecCCCCccchhhhhHhcHHHHHHhhh--CCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 476 AFSREGSQKEYVQHKMMDKAAQLWSLLS--KEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 476 a~Sr~~~~k~yvq~~l~~~~~~l~~~~~--~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
..+++. .+++.++++.+. .+.+.+. .+..+|+||| ++|++++.+.|.+.+.
T Consensus 175 ~~~~~~-~~~~~~grl~~~--~l~~~~~~~~~~~vyiCGP-~~m~~~v~~~l~~~Gv 227 (332)
T PRK10684 175 VAENNA-TEGFIAGRLTRE--LLQQAVPDLASRTVMTCGP-APYMDWVEQEVKALGV 227 (332)
T ss_pred EeccCC-CCCccccccCHH--HHHHhcccccCCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 766543 345555555431 1222222 2578999999 8999999999877643
No 35
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.94 E-value=5.4e-27 Score=238.46 Aligned_cols=183 Identities=21% Similarity=0.229 Sum_probs=145.2
Q ss_pred CCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCC
Q 008647 319 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS 398 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g 398 (558)
...+|||+.+.+|....|+|||+|+|.. ++.++|+|+. .|.+|.||+++++| +.|.+.+|.|
T Consensus 37 ~~~pGQ~v~l~~~~~~~~pySias~p~~-~~~l~l~Ik~-----------~G~~S~~L~~l~~G------d~v~v~gP~G 98 (289)
T PRK08345 37 TFKPGQFVQVTIPGVGEVPISICSSPTR-KGFFELCIRR-----------AGRVTTVIHRLKEG------DIVGVRGPYG 98 (289)
T ss_pred CcCCCCEEEEEcCCCCceeeEecCCCCC-CCEEEEEEEe-----------CChHHHHHHhCCCC------CEEEEeCCCC
Confidence 4578999999766656799999999864 5789999983 38999999999999 8999999999
Q ss_pred C-CcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEE
Q 008647 399 N-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 477 (558)
Q Consensus 399 ~-F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~ 477 (558)
. |.++....+|+||||+|||||||+||+++++.. +....+++|+||+|+.+ |++|++||++|++...+++++.++
T Consensus 99 ~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~---~~~~~~v~l~~~~r~~~-d~~~~deL~~l~~~~~~~~~~~~~ 174 (289)
T PRK08345 99 NGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDN---RWKYGNITLIYGAKYYE-DLLFYDELIKDLAEAENVKIIQSV 174 (289)
T ss_pred CCCCcccccCceEEEEecccchhHHHHHHHHHHhc---CCCCCcEEEEEecCCHH-HhhHHHHHHHHHhcCCCEEEEEEe
Confidence 6 766544457999999999999999999988752 21347899999999998 999999999998888888899999
Q ss_pred ecCCCCc---------------cchhhhhHhcHHHHHHhh-hCCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 478 SREGSQK---------------EYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 478 Sr~~~~k---------------~yvq~~l~~~~~~l~~~~-~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
|+++... +++.+.+.+. .. ..+..+|+||| ++|++++.+.|.+.+.
T Consensus 175 s~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~------~~~~~~~~vyiCGP-~~m~~~v~~~L~~~Gv 236 (289)
T PRK08345 175 TRDPEWPGCHGLPQGFIERVCKGVVTDLFREA------NTDPKNTYAAICGP-PVMYKFVFKELINRGY 236 (289)
T ss_pred cCCCCCcCccccccccccccccCchhhhhhhc------CCCccccEEEEECC-HHHHHHHHHHHHHcCC
Confidence 9864321 2222222111 11 13568999999 8999999999877543
No 36
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.94 E-value=7e-27 Score=229.76 Aligned_cols=182 Identities=25% Similarity=0.349 Sum_probs=149.4
Q ss_pred CCChhHHHHhhCCCC-CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEee
Q 008647 319 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 396 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~-~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~p 396 (558)
...+|||+.+.+|.. ..|+|||+|.|.. +.++|+|+.+. .|.+|+||++ +++| +.|.|.+|
T Consensus 30 ~~~pGQ~v~l~~~~~~~~r~ysi~s~~~~--~~i~~~i~~~~---------~G~~s~~l~~~l~~G------~~v~v~gP 92 (228)
T cd06209 30 AFLPGQYVNLQVPGTDETRSYSFSSAPGD--PRLEFLIRLLP---------GGAMSSYLRDRAQPG------DRLTLTGP 92 (228)
T ss_pred ccCCCCEEEEEeCCCCcccccccccCCCC--CeEEEEEEEcC---------CCcchhhHHhccCCC------CEEEEECC
Confidence 457899999975654 4799999999864 78999998642 5999999999 9999 89999999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.|.++.. .++++|||+|||||||++++++... .+ ..++++|+||+|+.+ |++|.++|+++.+...+++++++
T Consensus 93 ~G~~~~~~~-~~~~vlia~GtGIaP~~~ll~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 166 (228)
T cd06209 93 LGSFYLREV-KRPLLMLAGGTGLAPFLSMLDVLAE---DG-SAHPVHLVYGVTRDA-DLVELDRLEALAERLPGFSFRTV 166 (228)
T ss_pred cccceecCC-CCeEEEEEcccCHhHHHHHHHHHHh---cC-CCCcEEEEEecCCHH-HhccHHHHHHHHHhCCCeEEEEE
Confidence 998877643 4799999999999999999999875 22 457899999999999 99999999999988888889999
Q ss_pred EecCCC---CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 477 FSREGS---QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 477 ~Sr~~~---~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+|+++. .++|+++.+.+.. +...+..+|+||| ++|++++++.|.+.+
T Consensus 167 ~s~~~~~~~~~g~v~~~~~~~~-----~~~~~~~v~icGp-~~m~~~~~~~l~~~G 216 (228)
T cd06209 167 VADPDSWHPRKGYVTDHLEAED-----LNDGDVDVYLCGP-PPMVDAVRSWLDEQG 216 (228)
T ss_pred EcCCCccCCCcCCccHHHHHhh-----ccCCCcEEEEeCC-HHHHHHHHHHHHHcC
Confidence 998654 3457776654421 0123568999999 899999999998654
No 37
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.94 E-value=8.1e-27 Score=229.94 Aligned_cols=185 Identities=21% Similarity=0.329 Sum_probs=149.4
Q ss_pred CCChhHHHHhhCCCC-CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEee
Q 008647 319 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 396 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~-~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~p 396 (558)
...+|||+.+.+|.. ..|+|||+|.|.. .+.++|+|+.+. .|.+|+||++ +++| +.|.+.+|
T Consensus 29 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~~~---------~G~~s~~l~~~l~~G------~~v~i~gP 92 (232)
T cd06212 29 KFFAGQYVDITVPGTEETRSFSMANTPAD-PGRLEFIIKKYP---------GGLFSSFLDDGLAVG------DPVTVTGP 92 (232)
T ss_pred CcCCCCeEEEEcCCCCcccccccCCCCCC-CCEEEEEEEECC---------CCchhhHHhhcCCCC------CEEEEEcC
Confidence 457899999975654 5899999999865 578999998642 5899999997 9999 89999999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.|.++....+++||||+|||||||++|++++.. .+ ..++++|+||+|+.+ |++|.++|+++++...+++++.+
T Consensus 93 ~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 167 (232)
T cd06212 93 YGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAA---SG-SDRPVRFFYGARTAR-DLFYLEEIAALGEKIPDFTFIPA 167 (232)
T ss_pred cccceecCCCCCcEEEEecCcchhHHHHHHHHHHh---cC-CCCcEEEEEeccchH-HhccHHHHHHHHHhCCCEEEEEE
Confidence 99988775556799999999999999999999876 22 456899999999998 99999999999988777888888
Q ss_pred EecCCC------CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 477 FSREGS------QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 477 ~Sr~~~------~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
+|++.. ..+++++.+.+.... ..+..||+||| +.|++++.+.|.+.+.
T Consensus 168 ~s~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~v~~CGp-~~~~~~v~~~l~~~G~ 221 (232)
T cd06212 168 LSESPDDEGWSGETGLVTEVVQRNEAT-----LAGCDVYLCGP-PPMIDAALPVLEMSGV 221 (232)
T ss_pred ECCCCCCCCCcCCcccHHHHHHhhccC-----ccCCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 998542 235665544322111 03678999999 8999999999887553
No 38
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.94 E-value=2e-26 Score=245.05 Aligned_cols=181 Identities=18% Similarity=0.315 Sum_probs=142.0
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCCCCcCCCCCCCCEEEE
Q 008647 334 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMV 413 (558)
Q Consensus 334 ~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F~lp~~~~~plilI 413 (558)
..|+|||+|+|.. .+.++|+|+++.+.....+...|.+|+||+++++| +.|.+.+|.|.|.+.. ..+|+|||
T Consensus 205 ~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~i~gP~G~f~l~~-~~~~lvlI 276 (405)
T TIGR01941 205 TVRAYSMANYPAE-KGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPG------DKVTISGPFGEFFAKD-TDAEMVFI 276 (405)
T ss_pred cceeecCCCCCCC-CCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCc------CEEEEEeccCCCeecC-CCCCEEEE
Confidence 4699999999965 57899999976432211223469999999999999 8999999999998763 46799999
Q ss_pred ccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCC------Cccch
Q 008647 414 GPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS------QKEYV 487 (558)
Q Consensus 414 a~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~------~k~yv 487 (558)
|+|||||||+||+++.+.. .....+++||||+|+++ |++|.+||+++++.+.++++++++|+++. .++++
T Consensus 277 AgGtGIaP~lsmi~~~l~~---~~~~~~v~l~~g~R~~~-dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v 352 (405)
T TIGR01941 277 GGGAGMAPMRSHIFDQLKR---LKSKRKISFWYGARSLR-EMFYQEDFDQLEAENPNFVWHVALSDPQPEDNWTGYTGFI 352 (405)
T ss_pred ecCcCcchHHHHHHHHHhc---CCCCCeEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEEEeCCCCccCCCCCcccee
Confidence 9999999999999987652 12456899999999999 99999999999988888889999887532 24567
Q ss_pred hhhhHhcHHHHHHhh-hCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 488 QHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 488 q~~l~~~~~~l~~~~-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
++.+.+.. +.+.. ..++.||+||| ++|++++.+.|.+..
T Consensus 353 ~~~l~~~~--l~~~~~~~~~~vylCGP-~~m~~av~~~L~~~G 392 (405)
T TIGR01941 353 HNVLYENY--LKDHDAPEDCEFYMCGP-PMMNAAVIKMLEDLG 392 (405)
T ss_pred CHHHHHhh--hcccCCCCCeEEEEeCC-HHHHHHHHHHHHHcC
Confidence 66554321 11111 13578999999 899999999987654
No 39
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.94 E-value=9.6e-27 Score=229.25 Aligned_cols=187 Identities=21% Similarity=0.364 Sum_probs=144.9
Q ss_pred CCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEEEE
Q 008647 319 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIF 394 (558)
Q Consensus 319 ~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~-~l~~G~~~~~~~~v~v~ 394 (558)
.+.+|||+.+.++. ..+|+|||+|.|. .+.++|+|+.+. .|.+|+||+ ++++| +.+.|.
T Consensus 27 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~~~---------~G~~s~~l~~~~~~G------d~v~i~ 89 (231)
T cd06191 27 GFRPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKRVP---------GGRVSNYLREHIQPG------MTVEVM 89 (231)
T ss_pred CCCCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEECC---------CCccchHHHhcCCCC------CEEEEe
Confidence 35789999886432 2479999999986 578999998652 489999998 59999 899999
Q ss_pred eeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEE
Q 008647 395 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 474 (558)
Q Consensus 395 ~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~ 474 (558)
+|.|.|.++.....++||||+||||||++||+++.... ....+++|+||+|+.+ |++|.+||+++++...+++++
T Consensus 90 gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~----~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~ 164 (231)
T cd06191 90 GPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQT----APESDFTLIHSARTPA-DMIFAQELRELADKPQRLRLL 164 (231)
T ss_pred CCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhc----CCCCCEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEE
Confidence 99999988765567999999999999999999988752 1457899999999999 999999999999887788899
Q ss_pred EEEecCCCCccchhhhhHhcHHHHHH-hhh--CCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 475 LAFSREGSQKEYVQHKMMDKAAQLWS-LLS--KEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 475 ~a~Sr~~~~k~yvq~~l~~~~~~l~~-~~~--~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
.++||++....+........ +.+.+ ++. .++.+|+||| ++|++++++.|.+.+
T Consensus 165 ~~~s~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~vyicGp-~~mv~~~~~~l~~~G 220 (231)
T cd06191 165 CIFTRETLDSDLLHGRIDGE-QSLGAALIPDRLEREAFICGP-AGMMDAVETALKELG 220 (231)
T ss_pred EEECCCCCCccccCCccccc-HHHHHHhCccccCCeEEEECC-HHHHHHHHHHHHHcC
Confidence 99998653222211111000 11211 222 2479999999 899999999887644
No 40
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.94 E-value=1.8e-26 Score=245.72 Aligned_cols=186 Identities=16% Similarity=0.241 Sum_probs=146.9
Q ss_pred CCChhHHHHhhCC--C--C-CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEE
Q 008647 319 TPPIGVFFAAVAP--H--L-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAP 392 (558)
Q Consensus 319 ~~~~~~~l~~~~p--~--~-~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~ 392 (558)
.+.+|||+.+.++ . . .+|+|||+|+|. ++.++|+|+.+. .|.+|+||++ +++| +.|.
T Consensus 184 ~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~--~~~l~~~Vk~~~---------~G~~S~~L~~~l~~G------d~v~ 246 (399)
T PRK13289 184 DFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPN--GKYYRISVKREA---------GGKVSNYLHDHVNVG------DVLE 246 (399)
T ss_pred CCCCCCeEEEEEecCCccccceeEEEeeeCCC--CCeEEEEEEECC---------CCeehHHHhhcCCCC------CEEE
Confidence 4578999999754 1 1 249999999985 468999988542 5999999987 9999 8999
Q ss_pred EEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccE
Q 008647 393 IFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISE 472 (558)
Q Consensus 393 v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~ 472 (558)
+.+|.|.|.++....+|+||||+|||||||+||++++... + ...+++||||+|+.+ |++|++||+++++.+.+++
T Consensus 247 v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~eL~~l~~~~~~~~ 321 (399)
T PRK13289 247 LAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQ---Q-PKRPVHFIHAARNGG-VHAFRDEVEALAARHPNLK 321 (399)
T ss_pred EEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhc---C-CCCCEEEEEEeCChh-hchHHHHHHHHHHhCCCcE
Confidence 9999999998866678999999999999999999998752 2 457999999999999 9999999999998887888
Q ss_pred EEEEEecCCCC----ccchh-hhhHhcHHHHHHhhh-CCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 473 LILAFSREGSQ----KEYVQ-HKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 473 ~~~a~Sr~~~~----k~yvq-~~l~~~~~~l~~~~~-~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
++.++|++... ..|.+ .++. .+.+.+.+. .+..+|+||| ++|++++.+.|.+.+
T Consensus 322 ~~~~~s~~~~~~~~~~~~~~~g~i~--~~~l~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~G 381 (399)
T PRK13289 322 AHTWYREPTEQDRAGEDFDSEGLMD--LEWLEAWLPDPDADFYFCGP-VPFMQFVAKQLLELG 381 (399)
T ss_pred EEEEECCCccccccCCcccccCccc--HHHHHhhCCCCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 99999985431 11111 2222 122333332 4689999999 899999999987654
No 41
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.94 E-value=3.3e-26 Score=224.06 Aligned_cols=186 Identities=21% Similarity=0.255 Sum_probs=146.5
Q ss_pred CCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEeeC
Q 008647 319 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRP 397 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~p~ 397 (558)
...+|||+.+.+|....|+|||+|.|.. .+.++|+|+.+. .|.+|.||++ +++| +.|.|.+|.
T Consensus 23 ~~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~~~~~i~~~~---------~G~~s~~l~~~~~~G------~~v~i~gP~ 86 (222)
T cd06194 23 PYLPGQYVNLRRAGGLARSYSPTSLPDG-DNELEFHIRRKP---------NGAFSGWLGEEARPG------HALRLQGPF 86 (222)
T ss_pred CcCCCCEEEEEcCCCCceeeecCCCCCC-CCEEEEEEEecc---------CCccchHHHhccCCC------CEEEEecCc
Confidence 4578999999867777899999999865 378999998542 4999999998 7999 899999999
Q ss_pred CCCcCCC-CCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 398 SNFKLPA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 398 g~F~lp~-~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
|.|.+.. ...+++||||+|||||||++|++++.. .+ ..++++|+||+|+.+ |++|.+||+++++....++++.+
T Consensus 87 G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 161 (222)
T cd06194 87 GQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALR---QG-HQGEIRLVHGARDPD-DLYLHPALLWLAREHPNFRYIPC 161 (222)
T ss_pred CCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHh---cC-CCccEEEEEecCChh-hccCHHHHHHHHHHCCCeEEEEE
Confidence 9876653 445799999999999999999999875 22 457899999999999 99999999999987777788888
Q ss_pred EecCCCCccc-hhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 477 FSREGSQKEY-VQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 477 ~Sr~~~~k~y-vq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
.++++..... ..+.+.+ .+. ....+..+|+||| ++|++++++.|.+.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~vyicGp-~~m~~~~~~~L~~~Gv 211 (222)
T cd06194 162 VSEGSQGDPRVRAGRIAA---HLP-PLTRDDVVYLCGA-PSMVNAVRRRAFLAGA 211 (222)
T ss_pred EccCCCCCcccccchhhh---hhc-cccCCCEEEEeCC-HHHHHHHHHHHHHcCC
Confidence 8886543211 1111111 111 1234689999999 8999999999877543
No 42
>PRK05713 hypothetical protein; Provisional
Probab=99.94 E-value=1.3e-26 Score=238.38 Aligned_cols=178 Identities=17% Similarity=0.206 Sum_probs=141.8
Q ss_pred CCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCC
Q 008647 319 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS 398 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g 398 (558)
.+.+|||+.+.++....|+|||+|.|.. .+.++|+|+.+. .|.+|.||.++++| +.|.+.+|.|
T Consensus 118 ~~~~GQfv~l~~~~~~~R~ySias~p~~-~~~l~~~I~~~~---------~G~~s~~l~~l~~G------d~v~l~~p~g 181 (312)
T PRK05713 118 RYRAGQHLVLWTAGGVARPYSLASLPGE-DPFLEFHIDCSR---------PGAFCDAARQLQVG------DLLRLGELRG 181 (312)
T ss_pred CcCCCCEEEEecCCCcccccccCcCCCC-CCeEEEEEEEcC---------CCccchhhhcCCCC------CEEEEccCCC
Confidence 4578999998756656899999999865 578999998653 59999999999999 8999999997
Q ss_pred -CCcCCCC-CCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 399 -NFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 399 -~F~lp~~-~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.++.+ ..+|+||||||||||||+||++++.. .+ ...+++|+||+|+.+ |++|.+||++|++...++++..+
T Consensus 182 g~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~---~~-~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~ 256 (312)
T PRK05713 182 GALHYDPDWQERPLWLLAAGTGLAPLWGILREALR---QG-HQGPIRLLHLARDSA-GHYLAEPLAALAGRHPQLSVELV 256 (312)
T ss_pred CceEecCCCCCCcEEEEecCcChhHHHHHHHHHHh---cC-CCCcEEEEEEcCchH-HhhhHHHHHHHHHHCCCcEEEEE
Confidence 5666543 45799999999999999999998775 22 357899999999999 99999999999988777778776
Q ss_pred EecCCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 477 FSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 477 ~Sr~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
.++ ++++.+.+.. ....+..+|+||| ++|++++.+.|.+.+
T Consensus 257 ~~~------~~~~~l~~~~-----~~~~~~~vyiCGp-~~mv~~~~~~L~~~G 297 (312)
T PRK05713 257 TAA------QLPAALAELR-----LVSRQTMALLCGS-PASVERFARRLYLAG 297 (312)
T ss_pred ECc------chhhhhhhcc-----CCCCCeEEEEeCC-HHHHHHHHHHHHHcC
Confidence 653 2333322110 0123578999999 999999999997654
No 43
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.93 E-value=4.6e-26 Score=223.82 Aligned_cols=181 Identities=23% Similarity=0.330 Sum_probs=145.2
Q ss_pred CCChhHHHHhhCCCC-CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEee
Q 008647 319 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 396 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~-~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~p 396 (558)
...+|||+.+.+|.. ..|+|||+|+|.. .+.++|+|+.+. .|.+|+||.+ +++| +.|.+.+|
T Consensus 27 ~~~pGQ~~~l~~~~~~~~r~ysi~s~~~~-~~~l~~~vk~~~---------~G~~s~~l~~~l~~G------~~v~i~gP 90 (227)
T cd06213 27 AYKAGQYAELTLPGLPAARSYSFANAPQG-DGQLSFHIRKVP---------GGAFSGWLFGADRTG------ERLTVRGP 90 (227)
T ss_pred CcCCCCEEEEEeCCCCcccccccCCCCCC-CCEEEEEEEECC---------CCcchHHHHhcCCCC------CEEEEeCC
Confidence 356899999875554 4899999999864 578999998542 5899999965 8999 89999999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHc-CCccEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE-GVISELIL 475 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~-~~~~~~~~ 475 (558)
.|.|.++. ..+++||||+|||||||++|++++.. ++ ...+++++||+|+.+ |++|.++|+++++. ..+++++.
T Consensus 91 ~G~~~~~~-~~~~~lliagG~GiaP~~~~~~~~~~---~~-~~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 164 (227)
T cd06213 91 FGDFWLRP-GDAPILCIAGGSGLAPILAILEQARA---AG-TKRDVTLLFGARTQR-DLYALDEIAAIAARWRGRFRFIP 164 (227)
T ss_pred CcceEeCC-CCCcEEEEecccchhHHHHHHHHHHh---cC-CCCcEEEEEeeCCHH-HhccHHHHHHHHHhccCCeEEEE
Confidence 99998864 34799999999999999999999875 22 456799999999999 99999999999875 45677888
Q ss_pred EEecCCC------CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 476 AFSREGS------QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 476 a~Sr~~~------~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
++|+++. ..+++++.+.+. +..+..+|+||| +.|++++.+.|.+.+
T Consensus 165 ~~s~~~~~~~~~g~~g~v~~~l~~~-------~~~~~~v~~CGp-~~~~~~~~~~l~~~G 216 (227)
T cd06213 165 VLSEEPADSSWKGARGLVTEHIAEV-------LLAATEAYLCGP-PAMIDAAIAVLRALG 216 (227)
T ss_pred EecCCCCCCCccCCcccHHHHHHhh-------ccCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 8887642 224565544321 235689999999 899999999887654
No 44
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.93 E-value=1e-25 Score=224.93 Aligned_cols=184 Identities=22% Similarity=0.280 Sum_probs=147.7
Q ss_pred CCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeC
Q 008647 318 ATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRP 397 (558)
Q Consensus 318 ~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~ 397 (558)
....+|||+.+.+|....|+|||+|+|.. .+.++|+|+. .|.+|+||+++++| +.+.+.+|.
T Consensus 26 ~~~~pGQ~i~l~~~~~~~~pySi~s~~~~-~~~l~~~Ik~-----------~G~~S~~L~~l~~G------~~v~i~gP~ 87 (253)
T cd06221 26 FTFKPGQFVMLSLPGVGEAPISISSDPTR-RGPLELTIRR-----------VGRVTEALHELKPG------DTVGLRGPF 87 (253)
T ss_pred CCcCCCCEEEEEcCCCCccceEecCCCCC-CCeEEEEEEe-----------CChhhHHHHcCCCC------CEEEEECCc
Confidence 45678999999867666799999999964 5789999983 38899999999999 899999999
Q ss_pred CC-CcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 398 SN-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 398 g~-F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
|. |.++....+++||||+||||||+++|+++++.. +...++++|+|++|+.+ |++|+++|+++++. .++++.++
T Consensus 88 G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~---~~~~~~i~Li~~~r~~~-~~~~~~~L~~l~~~-~~~~~~~~ 162 (253)
T cd06221 88 GNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDN---REDYGKVTLLYGARTPE-DLLFKEELKEWAKR-SDVEVILT 162 (253)
T ss_pred CCCcccccccCCeEEEEccccchhHHHHHHHHHHhc---cccCCcEEEEEecCChH-HcchHHHHHHHHhc-CCeEEEEE
Confidence 96 666543468999999999999999999998862 22357899999999999 99999999999987 66778888
Q ss_pred EecCCC----CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 477 FSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 477 ~Sr~~~----~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
+|++.. ..+++++.+.+... ...+..||+||| +.|++++.+.|.+...
T Consensus 163 ~s~~~~~~~~~~g~v~~~l~~~~~-----~~~~~~vyicGp-~~mv~~~~~~L~~~Gv 214 (253)
T cd06221 163 VDRAEEGWTGNVGLVTDLLPELTL-----DPDNTVAIVCGP-PIMMRFVAKELLKLGV 214 (253)
T ss_pred eCCCCCCccCCccccchhHHhcCC-----CcCCcEEEEECC-HHHHHHHHHHHHHcCC
Confidence 887643 24566654433210 114679999999 8999999999977543
No 45
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.93 E-value=9.1e-26 Score=222.18 Aligned_cols=187 Identities=21% Similarity=0.305 Sum_probs=144.9
Q ss_pred CCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEEEE
Q 008647 319 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIF 394 (558)
Q Consensus 319 ~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~-~l~~G~~~~~~~~v~v~ 394 (558)
...+|||+.+.+|. ...|+|||+|.|.. .+.++|+|++.. .|.+|.||+ ++++| +.+.+.
T Consensus 27 ~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~~~---------~G~~s~~l~~~~~~G------~~v~i~ 90 (231)
T cd06215 27 AYKPGQFLTLELEIDGETVYRAYTLSSSPSR-PDSLSITVKRVP---------GGLVSNWLHDNLKVG------DELWAS 90 (231)
T ss_pred CcCCCCeEEEEEecCCCeEEEeeecccCCCC-CCcEEEEEEEcC---------CCcchHHHHhcCCCC------CEEEEE
Confidence 45789999887552 23699999999864 567999998653 489999997 59999 899999
Q ss_pred eeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEE
Q 008647 395 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 474 (558)
Q Consensus 395 ~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~ 474 (558)
+|.|.|.++.....++||||+|||||||++|+++... .+ ...+++|||++|+.+ |++|.++|++++++...++++
T Consensus 91 gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~ 165 (231)
T cd06215 91 GPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLD---TR-PDADIVFIHSARSPA-DIIFADELEELARRHPNFRLH 165 (231)
T ss_pred cCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHh---cC-CCCcEEEEEecCChh-hhhHHHHHHHHHHHCCCeEEE
Confidence 9999998875446899999999999999999998875 22 456899999999999 999999999999877777888
Q ss_pred EEEecCCCC-ccchhhhhHhcHHHHHHhhh--CCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 475 LAFSREGSQ-KEYVQHKMMDKAAQLWSLLS--KEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 475 ~a~Sr~~~~-k~yvq~~l~~~~~~l~~~~~--~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
++.++++.. ..+.++++.. +.+.+.+. .+..||+||| ++|++++.+.|.+..
T Consensus 166 ~~~~~~~~~~~~~~~g~~~~--~~l~~~~~~~~~~~v~icGp-~~m~~~~~~~l~~~g 220 (231)
T cd06215 166 LILEQPAPGAWGGYRGRLNA--ELLALLVPDLKERTVFVCGP-AGFMKAVKSLLAELG 220 (231)
T ss_pred EEEccCCCCcccccCCcCCH--HHHHHhcCCccCCeEEEECC-HHHHHHHHHHHHHcC
Confidence 888886542 2222233321 11222222 2468999999 899999999987654
No 46
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.93 E-value=2.5e-25 Score=221.78 Aligned_cols=183 Identities=19% Similarity=0.302 Sum_probs=142.1
Q ss_pred CCChhHHHHhhCCCC---CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEEEE
Q 008647 319 TPPIGVFFAAVAPHL---QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIF 394 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~---~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~-~l~~G~~~~~~~~v~v~ 394 (558)
.+.+|||+.+.++.- ..|.|||+|+|.. ++.+.|+|++.. .|.+|+||+ ++++| |+|.++
T Consensus 34 ~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~-~~~~~isVk~~~---------~G~~S~~Lh~~lk~G------d~l~v~ 97 (266)
T COG1018 34 DFEPGQYITVGLPNGGEPLLRAYSLSSAPDE-DSLYRISVKRED---------GGGGSNWLHDHLKVG------DTLEVS 97 (266)
T ss_pred ccCCCCeEEEEecCCCceeeEEEEeccCCCC-CceEEEEEEEeC---------CCcccHHHHhcCCCC------CEEEEe
Confidence 367899999976654 6899999999976 468999998653 499999999 69999 999999
Q ss_pred eeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEE
Q 008647 395 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 474 (558)
Q Consensus 395 ~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~ 474 (558)
.|.|.|.++..+..+++|||+|||||||+||++.... .+ . .++.|+|++|+.+ ++.|++| +.+++..+.....
T Consensus 98 ~P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~---~~-~-~~v~l~h~~R~~~-~~af~de-~~l~~~~~~~~~~ 170 (266)
T COG1018 98 APAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLD---RG-P-ADVVLVHAARTPA-DLAFRDE-LELAAELPNALLL 170 (266)
T ss_pred cCCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHH---hC-C-CCEEEEEecCChh-hcchhhH-HHHHhhCCCCeeE
Confidence 9999999987666799999999999999999999876 22 4 8899999999999 9999999 8888876653333
Q ss_pred EEEecCCCCccchhhhhHhcHHHHHHhhhCC-CEEEEeCCCcchHHHHHHHHHHHHHH
Q 008647 475 LAFSREGSQKEYVQHKMMDKAAQLWSLLSKE-GYLYVCGDAKGMARDVHRTLHTIVQE 531 (558)
Q Consensus 475 ~a~Sr~~~~k~yvq~~l~~~~~~l~~~~~~~-~~iyvCGp~~~M~~~v~~~L~~i~~~ 531 (558)
..+.+.....++.. ...+.....+. ..+|+||| .+|+++|+..|.++...
T Consensus 171 ~~~~~~~~~~g~~~------~~~l~~~~~~~~r~~y~CGp-~~fm~av~~~l~~~g~~ 221 (266)
T COG1018 171 GLYTERGKLQGRID------VSRLLSAAPDGGREVYLCGP-GPFMQAVRLALEALGVP 221 (266)
T ss_pred EEEEecCCcccccc------HHHHhccCCCCCCEEEEECC-HHHHHHHHHHHHHcCCC
Confidence 33332111122221 11111112223 89999999 78999999999877654
No 47
>PRK05723 flavodoxin; Provisional
Probab=99.93 E-value=1.5e-25 Score=204.85 Aligned_cols=100 Identities=23% Similarity=0.268 Sum_probs=91.9
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCc-hHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
++.+||++||||+|+||+|+..||++|++... ..|++++|||||||||+| ++||.++++++++|+++||+||+++++
T Consensus 48 ~~~li~~~sT~G~Ge~Pd~~~~f~~~L~~~~~--~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~~~~~ 125 (151)
T PRK05723 48 PEALLAVTSTTGMGELPDNLMPLYSAIRDQLP--AAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQPMLR 125 (151)
T ss_pred CCeEEEEECCCCCCCCchhHHHHHHHHHhcCc--cCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEeeccEE
Confidence 37899999999999999999999999986432 249999999999999999 899999999999999999999999999
Q ss_pred cCCCC--CchhHHHHHHHHHHHHHH
Q 008647 82 GDDDQ--CIEDDFTAWRELVWPELD 104 (558)
Q Consensus 82 ~d~~~--~~~~~~~~W~~~l~~~l~ 104 (558)
+|++. +++++|++|++++|++|.
T Consensus 126 ~D~~~~~~~e~~~~~W~~~~~~~l~ 150 (151)
T PRK05723 126 LDASETVTPETDAEPWLAEFAAALK 150 (151)
T ss_pred eecCCCCChHHHHHHHHHHHHHHhc
Confidence 99985 689999999999998774
No 48
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.93 E-value=1.2e-25 Score=223.62 Aligned_cols=182 Identities=20% Similarity=0.307 Sum_probs=145.5
Q ss_pred CCChhHHHHhhCC--C---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEE
Q 008647 319 TPPIGVFFAAVAP--H---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAP 392 (558)
Q Consensus 319 ~~~~~~~l~~~~p--~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~ 392 (558)
...+|||+.+.++ . ...|+|||+|.|.. +.++|+|+.+. .|.+|+||++ +++| +.+.
T Consensus 36 ~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~--~~l~~~ik~~~---------~G~~s~~l~~~~~~G------d~v~ 98 (247)
T cd06184 36 PFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNG--DYYRISVKREP---------GGLVSNYLHDNVKVG------DVLE 98 (247)
T ss_pred CCCCCCEEEEEEecCCCCCceeEEeEeccCCCC--CeEEEEEEEcC---------CCcchHHHHhcCCCC------CEEE
Confidence 4578999988753 2 35799999999853 47888887432 4999999998 9999 8999
Q ss_pred EEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccE
Q 008647 393 IFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISE 472 (558)
Q Consensus 393 v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~ 472 (558)
|.+|.|.|.++.+..+++||||+|||||||++|++++... + ...+++|+||+|+++ +.+|.++|+++++.+.+++
T Consensus 99 i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~---~-~~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~ 173 (247)
T cd06184 99 VSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAE---G-PGRPVTFIHAARNSA-VHAFRDELEELAARLPNLK 173 (247)
T ss_pred EEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhc---C-CCCcEEEEEEcCchh-hHHHHHHHHHHHhhCCCeE
Confidence 9999999998764567999999999999999999998752 1 467899999999999 8999999999998877788
Q ss_pred EEEEEecCCCC--------ccchhhhhHhcHHHHHH-hhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 473 LILAFSREGSQ--------KEYVQHKMMDKAAQLWS-LLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 473 ~~~a~Sr~~~~--------k~yvq~~l~~~~~~l~~-~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+++++|++... .++++. +.+.+ ....+..||+||| +.|++++++.|.+.+
T Consensus 174 ~~~~~s~~~~~~~~~~~~~~g~~~~------~~l~~~~~~~~~~v~icGp-~~m~~~v~~~l~~~G 232 (247)
T cd06184 174 LHVFYSEPEAGDREEDYDHAGRIDL------ALLRELLLPADADFYLCGP-VPFMQAVREGLKALG 232 (247)
T ss_pred EEEEECCCCcccccccccccCccCH------HHHhhccCCCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 99999986432 123322 12222 1235789999999 899999999997654
No 49
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.93 E-value=1.5e-25 Score=222.59 Aligned_cols=185 Identities=22% Similarity=0.361 Sum_probs=146.9
Q ss_pred CCChhHHHHhhCC--C-CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEE
Q 008647 319 TPPIGVFFAAVAP--H-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIF 394 (558)
Q Consensus 319 ~~~~~~~l~~~~p--~-~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~ 394 (558)
...+|||+.+.+| . ..+|+|||+|.|....+.++|+|+.+. +|.+|.||++ +++| +.|.+.
T Consensus 45 ~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~~ik~~~---------~G~~s~~l~~~~~~G------d~v~i~ 109 (243)
T cd06216 45 GHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKAQP---------DGLVSNWLVNHLAPG------DVVELS 109 (243)
T ss_pred CcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEEEEEEcC---------CCcchhHHHhcCCCC------CEEEEE
Confidence 3578999998754 2 347999999998512578999998642 4899999996 8999 899999
Q ss_pred eeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEE
Q 008647 395 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 474 (558)
Q Consensus 395 ~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~ 474 (558)
+|.|.|.++.+..+++||||+||||||++|++++... .+ ...+++|+||+|+.+ |.+|.++|+++++++.+++++
T Consensus 110 gP~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~---~~-~~~~i~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~ 184 (243)
T cd06216 110 QPQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLA---RG-PTADVVLLYYARTRE-DVIFADELRALAAQHPNLRLH 184 (243)
T ss_pred CCceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHh---cC-CCCCEEEEEEcCChh-hhHHHHHHHHHHHhCCCeEEE
Confidence 9999999886656899999999999999999999875 22 457899999999998 999999999999877777888
Q ss_pred EEEecCCCCccchhhhhHhcHHHHHHhhh--CCCEEEEeCCCcchHHHHHHHHHHHHHH
Q 008647 475 LAFSREGSQKEYVQHKMMDKAAQLWSLLS--KEGYLYVCGDAKGMARDVHRTLHTIVQE 531 (558)
Q Consensus 475 ~a~Sr~~~~k~yvq~~l~~~~~~l~~~~~--~~~~iyvCGp~~~M~~~v~~~L~~i~~~ 531 (558)
+.+|++ ...+++.... +.+... .+..+|+||| +.|++++.+.|.+.+..
T Consensus 185 ~~~s~~-~~~g~~~~~~------l~~~~~~~~~~~vyvcGp-~~m~~~~~~~l~~~Gv~ 235 (243)
T cd06216 185 LLYTRE-ELDGRLSAAH------LDAVVPDLADRQVYACGP-PGFLDAAEELLEAAGLA 235 (243)
T ss_pred EEEcCC-ccCCCCCHHH------HHHhccCcccCeEEEECC-HHHHHHHHHHHHHCCCc
Confidence 888876 2344443211 112222 3579999999 89999999999876543
No 50
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.92 E-value=1.4e-25 Score=218.89 Aligned_cols=180 Identities=19% Similarity=0.247 Sum_probs=139.8
Q ss_pred CCCChhHHHHhhCCC----CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEE
Q 008647 318 ATPPIGVFFAAVAPH----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPI 393 (558)
Q Consensus 318 ~~~~~~~~l~~~~p~----~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v 393 (558)
....+|||+.+.++. ...|+|||+|.|. .+.++|+|+++.. .|.+|.+|+++++| +.+.+
T Consensus 26 ~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~--~~~l~~~vk~~~~--------~g~~s~~l~~l~~G------~~v~i 89 (218)
T cd06196 26 YDFTPGQATEVAIDKPGWRDEKRPFTFTSLPE--DDVLEFVIKSYPD--------HDGVTEQLGRLQPG------DTLLI 89 (218)
T ss_pred CCCCCCCEEEEEeeCCCCCccccccccccCCC--CCeEEEEEEEcCC--------CCcHhHHHHhCCCC------CEEEE
Confidence 346899999987542 3579999999985 3789999986421 37789999999999 89999
Q ss_pred EeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEE
Q 008647 394 FIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISEL 473 (558)
Q Consensus 394 ~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~ 473 (558)
.+|.|.|.++ .|+||||+|||||||+||++++.. .+ ...+++|+||+|+.+ |++|.+||++|.. +++
T Consensus 90 ~gP~G~~~~~----~~~vlia~GtGiaP~~s~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~----~~~ 156 (218)
T cd06196 90 EDPWGAIEYK----GPGVFIAGGAGITPFIAILRDLAA---KG-KLEGNTLIFANKTEK-DIILKDELEKMLG----LKF 156 (218)
T ss_pred ECCccceEec----CceEEEecCCCcChHHHHHHHHHh---CC-CCceEEEEEecCCHH-HHhhHHHHHHhhc----ceE
Confidence 9999998753 589999999999999999999875 22 456799999999998 9999999999853 357
Q ss_pred EEEEecCCCCccchhhhhHhcHHHHHHhhh-CCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 474 ILAFSREGSQKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 474 ~~a~Sr~~~~k~yvq~~l~~~~~~l~~~~~-~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
+.++|++.. ..|.++++.+ +.+.+++. .++.||+||| ++|++++.+.|.+.+.
T Consensus 157 ~~~~s~~~~-~~~~~g~~~~--~~l~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~G~ 210 (218)
T cd06196 157 INVVTDEKD-PGYAHGRIDK--AFLKQHVTDFNQHFYVCGP-PPMEEAINGALKELGV 210 (218)
T ss_pred EEEEcCCCC-CCeeeeEECH--HHHHHhcCCCCCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 778888653 2344444432 12223332 3579999999 8999999998877543
No 51
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.92 E-value=3e-25 Score=232.29 Aligned_cols=189 Identities=20% Similarity=0.327 Sum_probs=144.8
Q ss_pred CCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEEEE
Q 008647 319 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIF 394 (558)
Q Consensus 319 ~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~-~l~~G~~~~~~~~v~v~ 394 (558)
.+.+|||+.+.++. ...|+|||+|.|. ++.++|+|+.+. .|.+|+||+ ++++| +.|.+.
T Consensus 32 ~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~--~~~l~i~vk~~~---------~G~~S~~l~~~l~~G------d~v~v~ 94 (352)
T TIGR02160 32 RFAPGQHLTLRREVDGEELRRSYSICSAPA--PGEIRVAVKKIP---------GGLFSTWANDEIRPG------DTLEVM 94 (352)
T ss_pred CCCCCCeEEEEEecCCcEeeeeccccCCCC--CCcEEEEEEEeC---------CCcchHHHHhcCCCC------CEEEEe
Confidence 45789999987532 2469999999984 478999998653 489999997 59999 899999
Q ss_pred eeCCCCcCCCCC--CCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC-cc
Q 008647 395 IRPSNFKLPANP--SVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV-IS 471 (558)
Q Consensus 395 ~p~g~F~lp~~~--~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~-~~ 471 (558)
+|.|.|.++... .+++||||+|||||||+||+++++.. + ...+++|+||+|+.+ |++|.+||+++++... .+
T Consensus 95 gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~---~-~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~ 169 (352)
T TIGR02160 95 APQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAA---E-PRSTFTLVYGNRRTA-SVMFAEELADLKDKHPQRF 169 (352)
T ss_pred CCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhc---C-CCceEEEEEEeCCHH-HHHHHHHHHHHHHhCcCcE
Confidence 999999876442 37999999999999999999988752 2 457899999999999 9999999999987765 47
Q ss_pred EEEEEEecCCCCccchhhhhHh-cHHHH-HHhh--hCCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 472 ELILAFSREGSQKEYVQHKMMD-KAAQL-WSLL--SKEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 472 ~~~~a~Sr~~~~k~yvq~~l~~-~~~~l-~~~~--~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
+++.++|++.....+...++.. ....+ .++. .....+|+||| ++|++++++.|.+.+.
T Consensus 170 ~~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~Gv 231 (352)
T TIGR02160 170 HLAHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGP-QAMVDDAEQALTGLGV 231 (352)
T ss_pred EEEEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 7888899865432222233211 11111 1121 13468999999 8999999999987654
No 52
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.92 E-value=2.7e-25 Score=228.10 Aligned_cols=182 Identities=12% Similarity=0.140 Sum_probs=138.3
Q ss_pred CCChhHHHHhhCC-C-----CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEE
Q 008647 319 TPPIGVFFAAVAP-H-----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAP 392 (558)
Q Consensus 319 ~~~~~~~l~~~~p-~-----~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~ 392 (558)
.+.+|||+.+..+ . ...|+|||+|.|.. .+.++|+|+++. .|.+|+||+++++| +.|.
T Consensus 81 ~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~-~~~le~~IK~~~---------~G~~S~~L~~lk~G------d~v~ 144 (325)
T PTZ00274 81 NLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHT-KGYFDIIVKRKK---------DGLMTNHLFGMHVG------DKLL 144 (325)
T ss_pred CCCCccEEEEEEecCCCCCCEEEEeeecCCCCCC-CCeEEEEEEEcC---------CCcccHHHhcCCCC------CEEE
Confidence 4578999886533 1 24699999999965 578999999653 59999999999999 8999
Q ss_pred EEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhc--CCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC-
Q 008647 393 IFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQD--GAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV- 469 (558)
Q Consensus 393 v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~--~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~- 469 (558)
+.+|.+.|.++.+..+++||||||||||||+||+++.+..... +....+++|+||+|+.+ |++|++||+++++...
T Consensus 145 v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~-di~~~~eL~~La~~~~~ 223 (325)
T PTZ00274 145 FRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTER-HILLKGLFDDLARRYSN 223 (325)
T ss_pred EeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHH-HhhHHHHHHHHHHhCCC
Confidence 9999777766544457999999999999999999988762110 11235899999999999 9999999999998765
Q ss_pred ccEEEEEEecCCC------CccchhhhhHhcHHHHHHhhh----CCCEEEEeCCCcchHHHHHHH
Q 008647 470 ISELILAFSREGS------QKEYVQHKMMDKAAQLWSLLS----KEGYLYVCGDAKGMARDVHRT 524 (558)
Q Consensus 470 ~~~~~~a~Sr~~~------~k~yvq~~l~~~~~~l~~~~~----~~~~iyvCGp~~~M~~~v~~~ 524 (558)
+++++.++|++.. ..++|.+.+. .+.+. ....+|+||| ++|+++|...
T Consensus 224 ~f~v~~~ls~~~~~~~w~g~~G~V~~~ll------~~~~~~~~~~~~~vylCGP-p~Mm~av~~~ 281 (325)
T PTZ00274 224 RFKVYYTIDQAVEPDKWNHFLGYVTKEMV------RRTMPAPEEKKKIIMLCGP-DQLLNHVAGT 281 (325)
T ss_pred cEEEEEEeCCCCcccCCCCCCCccCHHHH------HHhcCCCccCCcEEEEeCC-HHHHHHhcCC
Confidence 5788888886422 1244443321 11121 1257999999 9999999665
No 53
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.92 E-value=3e-25 Score=216.35 Aligned_cols=178 Identities=21% Similarity=0.308 Sum_probs=140.5
Q ss_pred CCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEEEE
Q 008647 319 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIF 394 (558)
Q Consensus 319 ~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~-~l~~G~~~~~~~~v~v~ 394 (558)
...+|||+.+.+|. ...|+|||+|.|.. .+.++|+|+. .|.+|.+|. ++++| +.|.+.
T Consensus 22 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~-----------~G~~t~~l~~~l~~G------~~v~i~ 83 (216)
T cd06198 22 GHRAGQFAFLRFDASGWEEPHPFTISSAPDP-DGRLRFTIKA-----------LGDYTRRLAERLKPG------TRVTVE 83 (216)
T ss_pred CcCCCCEEEEEeCCCCCCCCCCcEEecCCCC-CCeEEEEEEe-----------CChHHHHHHHhCCCC------CEEEEE
Confidence 45789999987553 56899999999864 4789999984 388999999 79999 899999
Q ss_pred eeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEE
Q 008647 395 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 474 (558)
Q Consensus 395 ~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~ 474 (558)
+|.|.|.++.. .+++||||+||||||+++|++++.. .+ ..++++|+|++|+.+ |++|.++|+++.+.+ +++++
T Consensus 84 gP~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~-~~~~~ 156 (216)
T cd06198 84 GPYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAA---RG-DARPVTLFYCVRDPE-DAVFLDELRALAAAA-GVVLH 156 (216)
T ss_pred CCCCCCccccc-CceEEEEccccCHHHHHHHHHHHHh---cC-CCceEEEEEEECCHH-HhhhHHHHHHHHHhc-CeEEE
Confidence 99999988765 6899999999999999999998875 22 357899999999999 999999999998877 55677
Q ss_pred EEEecCCCCccchhhhhHhcHHHHHHhh--hCCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 475 LAFSREGSQKEYVQHKMMDKAAQLWSLL--SKEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 475 ~a~Sr~~~~k~yvq~~l~~~~~~l~~~~--~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
++.++.+. .......+ .... ..+..||+||| ++|++++++.|.+...
T Consensus 157 ~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~vyicGp-~~m~~~v~~~l~~~Gv 205 (216)
T cd06198 157 VIDSPSDG-RLTLEQLV-------RALVPDLADADVWFCGP-PGMADALEKGLRALGV 205 (216)
T ss_pred EEeCCCCc-ccchhhhh-------hhcCCCcCCCeEEEECc-HHHHHHHHHHHHHcCC
Confidence 66654332 21121111 0111 24579999999 8999999999987543
No 54
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.92 E-value=2.2e-25 Score=219.97 Aligned_cols=183 Identities=21% Similarity=0.292 Sum_probs=144.4
Q ss_pred CCChhHHHHhhCC--CC--CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEE
Q 008647 319 TPPIGVFFAAVAP--HL--QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPI 393 (558)
Q Consensus 319 ~~~~~~~l~~~~p--~~--~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v 393 (558)
...+|||+.+.+| .. ..|+|||+|.|.. .+.++|+|+.+. .|.+|.||++ +++| +.|.+
T Consensus 30 ~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~~l~l~v~~~~---------~G~~s~~l~~~l~~G------d~v~i 93 (235)
T cd06217 30 PFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQ-RGRVELTVKRVP---------GGEVSPYLHDEVKVG------DLLEV 93 (235)
T ss_pred CcCCcCeEEEEEecCCCceeeeeecccCCCCC-CCeEEEEEEEcC---------CCcchHHHHhcCCCC------CEEEE
Confidence 4568999998754 22 2499999999865 468999998642 4889999987 8999 89999
Q ss_pred EeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEE
Q 008647 394 FIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISEL 473 (558)
Q Consensus 394 ~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~ 473 (558)
.+|.|.|.++....++++|||+||||||+++++++... .+ ...+++|+||+|+.+ |.+|.+||.+++++..++++
T Consensus 94 ~gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~---~~-~~~~i~l~~~~r~~~-~~~~~~el~~~~~~~~~~~~ 168 (235)
T cd06217 94 RGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRD---LG-WPVPFRLLYSARTAE-DVIFRDELEQLARRHPNLHV 168 (235)
T ss_pred eCCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHh---cC-CCceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEE
Confidence 99999988765445799999999999999999999875 22 457899999999999 99999999999987777788
Q ss_pred EEEEecCCC-C----ccchhhhhHhcHHHHHHhh--hCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 474 ILAFSREGS-Q----KEYVQHKMMDKAAQLWSLL--SKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 474 ~~a~Sr~~~-~----k~yvq~~l~~~~~~l~~~~--~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+.++||+.. . ++++.+.+ +.+++ ..+..||+||| ++|++++.+.|.+.+
T Consensus 169 ~~~~s~~~~~~~~~~~g~~~~~~------l~~~~~~~~~~~v~icGp-~~m~~~v~~~l~~~G 224 (235)
T cd06217 169 TEALTRAAPADWLGPAGRITADL------IAELVPPLAGRRVYVCGP-PAFVEAATRLLLELG 224 (235)
T ss_pred EEEeCCCCCCCcCCcCcEeCHHH------HHhhCCCccCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 888898622 1 23333222 11111 24679999999 899999999998754
No 55
>PRK09004 FMN-binding protein MioC; Provisional
Probab=99.92 E-value=5.2e-25 Score=200.66 Aligned_cols=99 Identities=24% Similarity=0.325 Sum_probs=91.6
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
+++++||++||||+|++|+|++.|++||+....+ |++++|||||||||+|++||.+++.+|++|+++||++|.++++
T Consensus 46 ~~~~li~~~sT~G~Ge~p~~~~~f~~~L~~~~~~---l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~ 122 (146)
T PRK09004 46 ASGLWLIVTSTHGAGDLPDNLQPFFEELQEQKPD---LSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGETLK 122 (146)
T ss_pred cCCeEEEEECCCCCCCCChhHHHHHHHHHhcCCC---CCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEeeccEE
Confidence 5789999999999999999999999999886433 9999999999999999999999999999999999999999999
Q ss_pred cCCCC--CchhHHHHHHHHHHHHH
Q 008647 82 GDDDQ--CIEDDFTAWRELVWPEL 103 (558)
Q Consensus 82 ~d~~~--~~~~~~~~W~~~l~~~l 103 (558)
+|++. +.+..|++|++.++.+|
T Consensus 123 ~D~~~~~~~e~~~~~W~~~~~~~~ 146 (146)
T PRK09004 123 IDVLQHPIPEDPAEEWLKSWINLL 146 (146)
T ss_pred EeCCCCCCchhHHHHHHHHHHHhC
Confidence 99986 47899999999988754
No 56
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.92 E-value=5.7e-25 Score=220.65 Aligned_cols=178 Identities=19% Similarity=0.215 Sum_probs=139.6
Q ss_pred CCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCC
Q 008647 319 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS 398 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g 398 (558)
.+.+|||+.+.+|...+|+|||++.+ ++.++|+|+. .|.+|+||+++++| +.|.+.+|.|
T Consensus 32 ~~~pGQfi~l~~~~~~~~pySi~~~~---~~~~~~~Ik~-----------~G~~S~~L~~l~~G------d~v~v~gP~G 91 (263)
T PRK08221 32 PVKPGQFFEVSLPKVGEAPISVSDYG---DGYIDLTIRR-----------VGKVTDEIFNLKEG------DKLFLRGPYG 91 (263)
T ss_pred CCCCCceEEEEeCCCCcceeeccCCC---CCEEEEEEEe-----------CCchhhHHHhCCCC------CEEEEECCCC
Confidence 45689999997676667999999975 4789999973 38999999999999 8999999999
Q ss_pred C-CcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEE
Q 008647 399 N-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 477 (558)
Q Consensus 399 ~-F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~ 477 (558)
. |.++....+|+||||+|||||||+||+++... .+...++++|+||+|+.+ |++|.+||++|++.. .+++++
T Consensus 92 ~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~---~~~~~~~v~L~~g~r~~~-~l~~~~el~~~~~~~---~~~~~~ 164 (263)
T PRK08221 92 NGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYE---NPQEIKSLDLILGFKNPD-DILFKEDLKRWREKI---NLILTL 164 (263)
T ss_pred CCcccCccCCccEEEEcccccHHHHHHHHHHHHh---CcccCceEEEEEecCCHH-HhhHHHHHHHHhhcC---cEEEEe
Confidence 6 88775556799999999999999999998865 222346899999999999 999999999998753 245556
Q ss_pred ecCCC----CccchhhhhHhcHHHHHHhhh--CCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 478 SREGS----QKEYVQHKMMDKAAQLWSLLS--KEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 478 Sr~~~----~k~yvq~~l~~~~~~l~~~~~--~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
++... ..+++++.+.+. .+. .+..+|+||| ++|++++.+.|.+.+.
T Consensus 165 ~~~~~~~~~~~G~v~~~l~~~------~~~~~~~~~vylCGp-~~mv~~~~~~L~~~Gv 216 (263)
T PRK08221 165 DEGEEGYRGNVGLVTKYIPEL------TLKDIDNMQVIVVGP-PIMMKFTVLEFLKRGI 216 (263)
T ss_pred cCCCCCCccCccccChhhHhc------cCCCcCCeEEEEECC-HHHHHHHHHHHHHcCC
Confidence 65432 234555433221 011 3678999999 9999999999976543
No 57
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.92 E-value=7e-25 Score=216.13 Aligned_cols=185 Identities=18% Similarity=0.245 Sum_probs=145.6
Q ss_pred CCCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEE
Q 008647 318 ATPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF 394 (558)
Q Consensus 318 ~~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~ 394 (558)
....+|||+.+.+|. ...|+|||+|.+.. .+.++|+|+.++ .|.+|.||+++++| +.|.+.
T Consensus 27 ~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~-~~~~~~~v~~~~---------~G~~s~~l~~~~~G------~~v~i~ 90 (234)
T cd06183 27 LGLPVGQHVELKAPDDGEQVVRPYTPISPDDD-KGYFDLLIKIYP---------GGKMSQYLHSLKPG------DTVEIR 90 (234)
T ss_pred CCCCcccEEEEEecCCCcccccccccccCCCc-CCEEEEEEEECC---------CCcchhHHhcCCCC------CEEEEE
Confidence 346799999998564 46799999999864 468999998542 49999999999999 899999
Q ss_pred eeCCCCcCCCCCC-CCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHc-CCccE
Q 008647 395 IRPSNFKLPANPS-VPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE-GVISE 472 (558)
Q Consensus 395 ~p~g~F~lp~~~~-~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~-~~~~~ 472 (558)
+|.|.|.+..... .++||||+||||||+++++++.... .....+++|+|++|+.+ +.+|.+||+++.+. ...++
T Consensus 91 gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~---~~~~~~i~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~ 166 (234)
T cd06183 91 GPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKD---PEDKTKISLLYANRTEE-DILLREELDELAKKHPDRFK 166 (234)
T ss_pred CCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhC---cCcCcEEEEEEecCCHH-HhhhHHHHHHHHHhCcccEE
Confidence 9999998865544 7999999999999999999998752 11357899999999999 99999999999886 34567
Q ss_pred EEEEEecCCCC----ccchhhhhHhcHHHHHHhhh----CCCEEEEeCCCcchHH-HHHHHHHHHH
Q 008647 473 LILAFSREGSQ----KEYVQHKMMDKAAQLWSLLS----KEGYLYVCGDAKGMAR-DVHRTLHTIV 529 (558)
Q Consensus 473 ~~~a~Sr~~~~----k~yvq~~l~~~~~~l~~~~~----~~~~iyvCGp~~~M~~-~v~~~L~~i~ 529 (558)
+++++|+.+.. .+++++.+. ...+. .+..+|+||| ++|++ ++++.|.+..
T Consensus 167 ~~~~~~~~~~~~~~~~g~~~~~~l------~~~~~~~~~~~~~~~icGp-~~~~~~~~~~~l~~~G 225 (234)
T cd06183 167 VHYVLSRPPEGWKGGVGFITKEMI------KEHLPPPPSEDTLVLVCGP-PPMIEGAVKGLLKELG 225 (234)
T ss_pred EEEEEcCCCcCCccccceECHHHH------HHhCCCCCCCCeEEEEECC-HHHHHHHHHHHHHHcC
Confidence 88888875432 345543321 11222 3578999999 89999 9999887643
No 58
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.92 E-value=8e-25 Score=223.44 Aligned_cols=195 Identities=17% Similarity=0.200 Sum_probs=140.1
Q ss_pred CCChhHHHHhhCCC-------CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEE
Q 008647 319 TPPIGVFFAAVAPH-------LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWA 391 (558)
Q Consensus 319 ~~~~~~~l~~~~p~-------~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v 391 (558)
.+.+|||+.+.++. ...|+||++|+|.. ++.++|+|+.+..........+|.+|+||+++++| +.|
T Consensus 63 ~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~-~~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v 135 (300)
T PTZ00319 63 GLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDE-KGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLG------DKI 135 (300)
T ss_pred CCccceEEEEEEEeCCCCccceEEeeeccCCCccc-CCEEEEEEEEeccCCCCCCCCCCChhhhhhcCCCC------CEE
Confidence 45789999987542 24699999999854 67899999976211000011259999999999999 899
Q ss_pred EEEeeCCCCcCCCC---------------CCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccc
Q 008647 392 PIFIRPSNFKLPAN---------------PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFI 456 (558)
Q Consensus 392 ~v~~p~g~F~lp~~---------------~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~ 456 (558)
.+.+|.|.|.+..+ ..++++|||+|||||||++|+++... ......+++|+||+|+.+ |++
T Consensus 136 ~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~---~~~~~~~i~liyg~r~~~-dl~ 211 (300)
T PTZ00319 136 EMRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKK---NKEDRTKVFLVYANQTED-DIL 211 (300)
T ss_pred EEEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHHHHHHHHHHh---CCCCCceEEEEEecCCHH-Hhh
Confidence 99999998865421 12489999999999999999998875 211345899999999999 999
Q ss_pred cHHHHHHHHHcCCccEEEEEEecCCC-----CccchhhhhHhcHHHHHHhhh------CCCEEEEeCCCcchHH-HHHHH
Q 008647 457 YEDELNNFEEEGVISELILAFSREGS-----QKEYVQHKMMDKAAQLWSLLS------KEGYLYVCGDAKGMAR-DVHRT 524 (558)
Q Consensus 457 y~~el~~~~~~~~~~~~~~a~Sr~~~-----~k~yvq~~l~~~~~~l~~~~~------~~~~iyvCGp~~~M~~-~v~~~ 524 (558)
|.++|.+++ ...+++++.+.++++. ..+++...+.+.. + .... .+..||+||| ++|++ .+.+.
T Consensus 212 ~~~eL~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~--~-~~~~~~~~~~~~~~vyiCGp-~~mv~~~~~~~ 286 (300)
T PTZ00319 212 LRKELDEAA-KDPRFHVWYTLDREATPEWKYGTGYVDEEMLRAH--L-PVPDPQNSGIKKVMALMCGP-PPMLQMAVKPN 286 (300)
T ss_pred HHHHHHHHh-hCCCEEEEEEECCCCCCCcccccceeCHHHHHhh--c-CCccccccccCCeEEEEECC-HHHHHHHHHHH
Confidence 999999965 4556678888887432 2355554322111 0 0001 2468999999 89998 56777
Q ss_pred HHHHH
Q 008647 525 LHTIV 529 (558)
Q Consensus 525 L~~i~ 529 (558)
|.+++
T Consensus 287 L~~~G 291 (300)
T PTZ00319 287 LEKIG 291 (300)
T ss_pred HHHcC
Confidence 76654
No 59
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.91 E-value=1.2e-24 Score=215.58 Aligned_cols=188 Identities=22% Similarity=0.345 Sum_probs=143.9
Q ss_pred CCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEEEE
Q 008647 319 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIF 394 (558)
Q Consensus 319 ~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~-~l~~G~~~~~~~~v~v~ 394 (558)
.+.+|||+.+.+|. ..+|+|||+|.|.. +.++|+|+++. .|.+|.||+ ++++| +.+.+.
T Consensus 32 ~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~--~~l~~~i~~~~---------~G~~s~~l~~~~~~G------~~v~i~ 94 (241)
T cd06214 32 RYRPGQFLTLRVPIDGEEVRRSYSICSSPGD--DELRITVKRVP---------GGRFSNWANDELKAG------DTLEVM 94 (241)
T ss_pred CcCCCCeEEEEeecCCCeeeeeeeecCCCCC--CcEEEEEEEcC---------CCccchhHHhccCCC------CEEEEe
Confidence 46789999998542 36799999998864 47999998653 599999998 69999 899999
Q ss_pred eeCCCCcCCCC-CCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC-ccE
Q 008647 395 IRPSNFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV-ISE 472 (558)
Q Consensus 395 ~p~g~F~lp~~-~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~-~~~ 472 (558)
+|.|.|.++.+ ..+++||||+|||||||+++++++.. .+ ..++++|+|++|+.. |++|.+||+++++... .++
T Consensus 95 gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~ 169 (241)
T cd06214 95 PPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALA---RE-PASRVTLVYGNRTEA-SVIFREELADLKARYPDRLT 169 (241)
T ss_pred CCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHh---cC-CCCcEEEEEEeCCHH-HhhHHHHHHHHHHhCcCceE
Confidence 99999988765 46899999999999999999999875 21 357899999999999 9999999999987654 566
Q ss_pred EEEEEecCCCCccchhhhhHhc-HHHHH-Hhh--hCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 473 LILAFSREGSQKEYVQHKMMDK-AAQLW-SLL--SKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 473 ~~~a~Sr~~~~k~yvq~~l~~~-~~~l~-~~~--~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+..++|+++....+....+.+. ..... +.. .++..||+||| +.|++.+.+.|.+.+
T Consensus 170 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~icGp-~~mv~~v~~~l~~~G 229 (241)
T cd06214 170 VIHVLSREQGDPDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGP-EPMMDAVEAALLELG 229 (241)
T ss_pred EEEEecCCCCCcccccCccCHHHHHHhhhhhcccccCcEEEEECC-HHHHHHHHHHHHHcC
Confidence 7778887654322122222211 11111 111 23579999999 899999999987654
No 60
>PRK08105 flavodoxin; Provisional
Probab=99.91 E-value=1.7e-24 Score=197.86 Aligned_cols=98 Identities=24% Similarity=0.423 Sum_probs=89.7
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
+++.+||++||||+|+||+|+..||++|++... .|++++|||||||||+|++||.++++++++|+++||++|+++++
T Consensus 48 ~~~~vi~~~sT~G~Ge~p~~~~~f~~~l~~~~~---~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~ 124 (149)
T PRK08105 48 QDELVLVVTSTTGQGDLPDSIVPLFQALKDTAG---YQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGERLE 124 (149)
T ss_pred cCCeEEEEECCCCCCCCChhHHHHHHHHHhcCc---ccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeeccEe
Confidence 358999999999999999999999999987532 39999999999999999999999999999999999999999999
Q ss_pred cCCCC--CchhHHHHHHHHHHHHH
Q 008647 82 GDDDQ--CIEDDFTAWRELVWPEL 103 (558)
Q Consensus 82 ~d~~~--~~~~~~~~W~~~l~~~l 103 (558)
+|+++ +.+..|++|+++ |..+
T Consensus 125 ~D~~~~~~~e~~~~~W~~~-~~~~ 147 (149)
T PRK08105 125 IDACETPEPEVEANPWVEQ-WGTL 147 (149)
T ss_pred eeCCCCCChHHHHHHHHHH-HHHH
Confidence 99877 589999999988 6554
No 61
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.91 E-value=2e-24 Score=216.43 Aligned_cols=179 Identities=16% Similarity=0.185 Sum_probs=137.8
Q ss_pred CCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCC
Q 008647 319 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS 398 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g 398 (558)
.+.+|||+.+.+|...+|+|||+|.+ .+.++|+|+. .|.+|++|+++++| +.|.+.+|.|
T Consensus 30 ~~~pGQ~v~l~~~~~~~~pySi~~~~---~~~l~~~Vk~-----------~G~~S~~L~~l~~G------d~v~i~gP~G 89 (261)
T TIGR02911 30 PVKPGQFFEVSLPKYGEAPISVSGIG---EGYIDLTIRR-----------VGKVTDEVFTLKEG------DNLFLRGPYG 89 (261)
T ss_pred CCCCCcEEEEEecCCCccceecCCCC---CCeEEEEEEe-----------CchhhHHHHcCCCC------CEEEEecCCC
Confidence 35789999988787778999999853 5789999983 38999999999999 8999999999
Q ss_pred C-CcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEE
Q 008647 399 N-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 477 (558)
Q Consensus 399 ~-F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~ 477 (558)
. |.++....+|+||||+||||||++||++++.. ++...++++|+||+|+.+ |++|.+||++|++.. .+..++
T Consensus 90 ~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~---~~~~~~~v~L~~~~r~~~-~~~~~~eL~~l~~~~---~~~~~~ 162 (261)
T TIGR02911 90 NGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVK---NPKEIKSLNLILGFKTPD-DILFKEDIAEWKGNI---NLTLTL 162 (261)
T ss_pred CCcccCccCCceEEEEecccCcHHHHHHHHHHHh---CcccCceEEEEEecCCHH-HhhHHHHHHHHHhcC---cEEEEE
Confidence 6 87765556899999999999999999998765 222346899999999999 999999999998753 234444
Q ss_pred ecCCC----CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 478 SREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 478 Sr~~~----~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+++.. ..+++.+.+.+.. +.+ ..+..+|+||| +.|++++.+.|.+..
T Consensus 163 ~~~~~~~~~~~g~v~~~l~~~~--~~~--~~~~~v~lCGp-~~mv~~~~~~L~~~G 213 (261)
T TIGR02911 163 DEAEEDYKGNIGLVTKYIPELT--LKD--IEEVQAIVVGP-PIMMKFTVQELLKKG 213 (261)
T ss_pred cCCCCCCcCCeeccCHhHHhcc--CCC--ccceEEEEECC-HHHHHHHHHHHHHcC
Confidence 54322 2345554332210 000 13578999999 899999999987754
No 62
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.91 E-value=3e-24 Score=213.44 Aligned_cols=174 Identities=18% Similarity=0.285 Sum_probs=137.8
Q ss_pred CCChhHHHHhhCCC----CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEE
Q 008647 319 TPPIGVFFAAVAPH----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF 394 (558)
Q Consensus 319 ~~~~~~~l~~~~p~----~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~ 394 (558)
.+.+|||+.+.+|. ...|+|||+|.|.. .+.++|+|+.. |.+|+||.++++| ++|.|.
T Consensus 24 ~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~~l~l~v~~~-----------G~~s~~l~~l~~G------d~v~i~ 85 (246)
T cd06218 24 AAKPGQFVMLRVPDGSDPLLRRPISIHDVDPE-EGTITLLYKVV-----------GKGTRLLSELKAG------DELDVL 85 (246)
T ss_pred cCCCCcEEEEEeCCCCCCcCCCceEeeeccCC-CCEEEEEEEEE-----------CcchHHHhcCCCC------CEEEEE
Confidence 45789999988553 35799999998854 57899998743 7789999999999 899999
Q ss_pred eeCC-CCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEE
Q 008647 395 IRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISEL 473 (558)
Q Consensus 395 ~p~g-~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~ 473 (558)
+|.| .|.++. ..+++||||+|||||||+||++++.. ...+++|+|++|+.+ |.+|+++|+++.. ++
T Consensus 86 gP~G~~~~~~~-~~~~~vlIagGtGIaP~~s~l~~~~~------~~~~v~l~~~~r~~~-d~~~~~eL~~l~~-----~~ 152 (246)
T cd06218 86 GPLGNGFDLPD-DDGKVLLVGGGIGIAPLLFLAKQLAE------RGIKVTVLLGFRSAD-DLFLVEEFEALGA-----EV 152 (246)
T ss_pred ecCCCCcCCCC-CCCcEEEEecccCHHHHHHHHHHHHh------cCCceEEEEEccchh-hhhhHHHHHhhCC-----cE
Confidence 9999 477764 46899999999999999999998765 246899999999999 9999999999853 23
Q ss_pred EEEEecCC--CCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 474 ILAFSREG--SQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 474 ~~a~Sr~~--~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
.+ .+++. ..++|+++.+.+.... ..+..||+||| ++|++++++.|.+...
T Consensus 153 ~~-~~~~~~~~~~g~v~~~l~~~~~~-----~~~~~vyiCGp-~~mv~~~~~~L~~~Gv 204 (246)
T cd06218 153 YV-ATDDGSAGTKGFVTDLLKELLAE-----ARPDVVYACGP-EPMLKAVAELAAERGV 204 (246)
T ss_pred EE-EcCCCCCCcceehHHHHHHHhhc-----cCCCEEEEECC-HHHHHHHHHHHHhcCC
Confidence 32 23332 2356788766554322 14689999999 8999999999987654
No 63
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.91 E-value=6.3e-24 Score=206.18 Aligned_cols=175 Identities=20% Similarity=0.244 Sum_probs=136.4
Q ss_pred CCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEeeC
Q 008647 319 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRP 397 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~p~ 397 (558)
...+|||+.+.+|....|+|||+|.|.+ .+.++|+|+.+.. .+.+|.||++ +++| +.|.+.+|.
T Consensus 25 ~~~pGQ~~~l~~~~~~~r~ySi~s~~~~-~~~l~~~v~~~~~--------g~~~s~~l~~~~~~G------d~v~i~gP~ 89 (211)
T cd06185 25 AFEPGAHIDVHLPNGLVRQYSLCGDPAD-RDRYRIAVLREPA--------SRGGSRYMHELLRVG------DELEVSAPR 89 (211)
T ss_pred CCCCCceEEEEcCCCCceeeeccCCCCC-CCEEEEEEEeccC--------CCchHHHHHhcCCCC------CEEEEcCCc
Confidence 5678999999866667899999999864 5889999985420 2347999976 7889 899999999
Q ss_pred CCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEE
Q 008647 398 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 477 (558)
Q Consensus 398 g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~ 477 (558)
|.|.++.+ .+++||||+||||||+++|+++... ...+++|+||+|+.+ |.+|.++|++++ .. .+.+.+
T Consensus 90 g~f~~~~~-~~~~v~ia~GtGiap~~~il~~~~~------~~~~v~l~~~~r~~~-~~~~~~~l~~~~--~~--~~~~~~ 157 (211)
T cd06185 90 NLFPLDEA-ARRHLLIAGGIGITPILSMARALAA------RGADFELHYAGRSRE-DAAFLDELAALP--GD--RVHLHF 157 (211)
T ss_pred cCCcCCCC-CCcEEEEeccchHhHHHHHHHHHHh------CCCCEEEEEEeCCCc-chhHHHHHhhhc--CC--cEEEEE
Confidence 99988643 5799999999999999999998764 236899999999998 999999999987 22 244455
Q ss_pred ecCCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 478 SREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 478 Sr~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
++.. ....+.+.+.. ...+..+|+||| +.|++++++.|.+...
T Consensus 158 ~~~~-~~~~~~~~~~~--------~~~~~~vyicGp-~~m~~~~~~~l~~~gv 200 (211)
T cd06185 158 DDEG-GRLDLAALLAA--------PPAGTHVYVCGP-EGMMDAVRAAAAALGW 200 (211)
T ss_pred CCCC-CccCHHHHhcc--------CCCCCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 5543 23333333321 124679999999 8999999999977643
No 64
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.90 E-value=1.8e-23 Score=208.04 Aligned_cols=178 Identities=21% Similarity=0.318 Sum_probs=147.7
Q ss_pred CCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCC
Q 008647 319 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS 398 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g 398 (558)
.+.+|||+.+.+|....|+|||+|.+.. .+.++|.|++.. .|.+|.+++.+++| +.|.+.||.|
T Consensus 35 ~~~pGQfv~l~~~~~~~~P~si~~~~~~-~g~~~l~i~~~~---------~G~~T~~i~~~k~g------d~i~v~GP~G 98 (252)
T COG0543 35 TFKPGQFVMLRVPGGVRRPYSLASAPDD-KGELELHIRVYE---------VGKVTKYIFGLKEG------DKIRVRGPLG 98 (252)
T ss_pred ccCCCcEEEEEeCCCcEEEeeeccCCCc-CCcEEEEEEEEe---------CChHHHHHhhccCC------CEEEEEcCCC
Confidence 4789999999978889999999999975 677888888765 59999999999999 8999999999
Q ss_pred CCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEe
Q 008647 399 NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFS 478 (558)
Q Consensus 399 ~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~S 478 (558)
++.+.++..+|+++||+|||+||+++++++... ++ ...+++++||+|++. |+++.+||+++... +++.+.+
T Consensus 99 ~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~---~~-~~~~V~~~~G~~~~~-dl~~~~el~~~~~~----~~~~~~~ 169 (252)
T COG0543 99 NGFLREKIGKPVLLIAGGTGIAPLYAIAKELKE---KG-DANKVTLLYGARTAK-DLLLLDELEELAEK----EVHPVTD 169 (252)
T ss_pred CCccccccCCcEEEEecccCHhHHHHHHHHHHh---cC-CCceEEEEEeccChh-hcccHHHHHHhhcC----cEEEEEC
Confidence 776665567789999999999999999999876 34 558999999999999 99999999999875 3555555
Q ss_pred cCCC--Cccch-hhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 479 REGS--QKEYV-QHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 479 r~~~--~k~yv-q~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
++. .+++| ++.+.+... .+...+|+||| +.|++++.+.+.+..
T Consensus 170 -~~~~G~~G~v~~~~~~~~~~------~~~~~v~~cGp-~~M~~~v~~~~~~~g 215 (252)
T COG0543 170 -DGWKGRKGFVTTDVLKELLD------LEVDDVYICGP-PAMVKAVREKLKEYG 215 (252)
T ss_pred -CCCCccCcceeHHHHhhhcc------ccCCEEEEECC-HHHHHHHHHHHHhcC
Confidence 322 46777 665544321 14689999999 999999999888765
No 65
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.90 E-value=2.1e-23 Score=203.86 Aligned_cols=158 Identities=18% Similarity=0.254 Sum_probs=122.2
Q ss_pred CCChhHHHHhhCCCC-------------------CCcccccCCCCCCC--CCeEEEEEEEEEccCCCCCcccCcccHHhh
Q 008647 319 TPPIGVFFAAVAPHL-------------------QPRYYSISSSPRFA--PDRVHVTCALVYGPTPTGRIHKGVCSTWMK 377 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~-------------------~pR~YSIaS~p~~~--~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~ 377 (558)
.+.+|||+.+.+|.. ..|+|||||+|..+ .+.++|+|+. .|.+|++|.
T Consensus 25 ~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~vk~-----------~G~~T~~L~ 93 (220)
T cd06197 25 KWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEITVRK-----------KGPVTGFLF 93 (220)
T ss_pred ccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEEEEe-----------CCCCCHHHH
Confidence 456899988875532 34999999999653 2688888873 389999999
Q ss_pred hcCC-----CCCCCCccEEEEEeeCCCCcCCC---CCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEecc
Q 008647 378 NAIP-----LEGNGDCSWAPIFIRPSNFKLPA---NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCR 449 (558)
Q Consensus 378 ~l~~-----G~~~~~~~~v~v~~p~g~F~lp~---~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R 449 (558)
++.. | +.+.+.+|.|.|.++. +..+++||||||||||||++|++++.. .+....+++|+||+|
T Consensus 94 ~~~~~~~~~G------~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~---~~~~~~~v~l~~~~r 164 (220)
T cd06197 94 QVARRLREQG------LEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILS---SRNTTWDITLLWSLR 164 (220)
T ss_pred HhhhcccCCC------ceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHh---cccCCCcEEEEEEec
Confidence 8543 7 8999999999998874 335799999999999999999998875 221357899999999
Q ss_pred CCCCccccHHHHHHHHHcCCccEEEEEEecCCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHH
Q 008647 450 NRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 527 (558)
Q Consensus 450 ~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~ 527 (558)
+.+ |++|.+||.++... ...+.... ...||+||| ++|++++.+.+.+
T Consensus 165 ~~~-~~~~~~el~~~~~~--~~~~~~~~---------------------------~~~v~~CGP-~~m~~~~~~~~~~ 211 (220)
T cd06197 165 EDD-LPLVMDTLVRFPGL--PVSTTLFI---------------------------TSEVYLCGP-PALEKAVLEWLEG 211 (220)
T ss_pred chh-hHHHHHHHHhccCC--ceEEEEEE---------------------------eccEEEECc-HHHHHHHHHHhhh
Confidence 999 99999999886531 11111111 117999999 8999999887765
No 66
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.89 E-value=6.8e-23 Score=202.91 Aligned_cols=183 Identities=15% Similarity=0.201 Sum_probs=148.2
Q ss_pred CCChhHHHHhhCCCC---CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEe
Q 008647 319 TPPIGVFFAAVAPHL---QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~---~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~ 395 (558)
.+|.||.+.+.+|.. .-|+||..|++.. .+.++|.|++.. .|.+|.||.++++| |+|.++|
T Consensus 81 ~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~-~g~~~l~VK~Y~---------~G~mS~~l~~LkiG------d~ve~rG 144 (286)
T KOG0534|consen 81 GLPIGQHVVLKAPIGGKLVVRPYTPVSLDDD-KGYFDLVVKVYP---------KGKMSQHLDSLKIG------DTVEFRG 144 (286)
T ss_pred CcccceEEEEEecCCCcEEEEecCCccCccc-cceEEEEEEecc---------CCcccHHHhcCCCC------CEEEEec
Confidence 468888888875543 5799999999876 689999999764 59999999999999 9999999
Q ss_pred eCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC-ccEEE
Q 008647 396 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV-ISELI 474 (558)
Q Consensus 396 p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~-~~~~~ 474 (558)
|.|.|.++....+.+.|||||||||||++++++++.. ..+..+++|+|++++++ |+++++||+.++++.+ .++++
T Consensus 145 P~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~---~~d~tki~lly~N~te~-DILlr~eL~~la~~~p~rf~~~ 220 (286)
T KOG0534|consen 145 PIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKD---PEDTTKISLLYANKTED-DILLREELEELASKYPERFKVW 220 (286)
T ss_pred CccceEecCCCcceEEEEecccchhhHHHHHHHHhcC---CCCCcEEEEEEecCCcc-ccchHHHHHHHHhhCcceEEEE
Confidence 9999888766678999999999999999999998862 23467899999999999 9999999999999987 88899
Q ss_pred EEEecCCC----CccchhhhhHhcHHHHHHhhh---C-CCEEEEeCCCcchHHH-HHHHHHHH
Q 008647 475 LAFSREGS----QKEYVQHKMMDKAAQLWSLLS---K-EGYLYVCGDAKGMARD-VHRTLHTI 528 (558)
Q Consensus 475 ~a~Sr~~~----~k~yvq~~l~~~~~~l~~~~~---~-~~~iyvCGp~~~M~~~-v~~~L~~i 528 (558)
.+.++++. .++||..-+ +...+. + ...++|||| ++|.+. +...|.++
T Consensus 221 y~v~~~~~~w~~~~g~It~~~------i~~~l~~~~~~~~~~liCGP-p~m~~~~~~~~le~L 276 (286)
T KOG0534|consen 221 YVVDQPPEIWDGSVGFITKDL------IKEHLPPPKEGETLVLICGP-PPMINGAAQGNLEKL 276 (286)
T ss_pred EEEcCCcccccCccCccCHHH------HHhhCCCCCCCCeEEEEECC-HHHHhHHHHHHHHhc
Confidence 99988874 345654322 222222 2 478999999 899984 44444433
No 67
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.89 E-value=5.5e-23 Score=202.79 Aligned_cols=166 Identities=20% Similarity=0.282 Sum_probs=131.0
Q ss_pred CCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCC
Q 008647 319 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS 398 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g 398 (558)
...+|||+.+.+|....|+|||+|.| +.++|+|+. .|.+|+||+++++| +.+.+.+|.|
T Consensus 23 ~~~pGQ~v~l~~~~~~~~~~Si~s~~----~~l~~~v~~-----------~G~~s~~L~~l~~G------d~v~i~gP~G 81 (233)
T cd06220 23 DFKPGQFVMVWVPGVDEIPMSLSYID----GPNSITVKK-----------VGEATSALHDLKEG------DKLGIRGPYG 81 (233)
T ss_pred CCCCCceEEEEeCCCCcceeEEecCC----CeEEEEEEe-----------cChHHHHHHhcCCC------CEEEEECcCC
Confidence 56789999997666667999999997 679998873 38999999999999 8999999999
Q ss_pred C-CcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEE
Q 008647 399 N-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 477 (558)
Q Consensus 399 ~-F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~ 477 (558)
. |.++ .+|+||||+|||||||++|+++... . ++++|+|++|+.+ |++|.+||++. . ++.++.
T Consensus 82 ~~f~~~---~~~~vliAgGtGitP~~sil~~~~~------~-~~i~l~~~~r~~~-d~~~~~eL~~~----~--~~~~~~ 144 (233)
T cd06220 82 NGFELV---GGKVLLIGGGIGIAPLAPLAERLKK------A-ADVTVLLGARTKE-ELLFLDRLRKS----D--ELIVTT 144 (233)
T ss_pred CCccCC---CCeEEEEecCcChHHHHHHHHHHHh------c-CCEEEEEecCChH-HChhHHHHhhC----C--cEEEEE
Confidence 6 8775 5799999999999999999998765 2 7899999999999 99999999972 1 233322
Q ss_pred ecCC--CCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 478 SREG--SQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 478 Sr~~--~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
+ +. ...+++++.+.+.. ......||+||| ++|++++.+.|.+...
T Consensus 145 ~-~~~~~~~g~~~~~l~~~~------~~~~~~vyicGp-~~m~~~~~~~L~~~g~ 191 (233)
T cd06220 145 D-DGSYGFKGFVTDLLKELD------LEEYDAIYVCGP-EIMMYKVLEILDERGV 191 (233)
T ss_pred e-CCCCcccceehHHHhhhc------ccCCCEEEEECC-HHHHHHHHHHHHhcCC
Confidence 2 21 12456665443321 123468999999 8999999999977543
No 68
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.89 E-value=3.6e-23 Score=209.59 Aligned_cols=174 Identities=16% Similarity=0.150 Sum_probs=132.3
Q ss_pred CCChhHHHHhhCCCC-CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEE-EEEee
Q 008647 319 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWA-PIFIR 396 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~-~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v-~v~~p 396 (558)
...+|||+.+.++.. .+|+|||+|.+.. ++.++|+|++ .|.+|.+|+++++| +.| .|.+|
T Consensus 27 ~~~pGQfv~l~~~~~~~~rpySias~~~~-~~~i~l~vk~-----------~G~~T~~L~~l~~G------d~v~~i~GP 88 (281)
T PRK06222 27 KAKPGQFVIVRIDEKGERIPLTIADYDRE-KGTITIVFQA-----------VGKSTRKLAELKEG------DSILDVVGP 88 (281)
T ss_pred cCCCCeEEEEEeCCCCCceeeEeeEEcCC-CCEEEEEEEe-----------CCcHHHHHhcCCCC------CEEeeEEcC
Confidence 356899999975543 4689999998754 5789999984 38999999999999 899 79999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.|..... .+++||||+|+||||+++++++... ...+++|+||+|+.+ |++|.+||++++.. +++
T Consensus 89 ~G~~~~~~~-~~~~llIaGGiGiaPl~~l~~~l~~------~~~~v~l~~g~r~~~-d~~~~~el~~~~~~-----~~v- 154 (281)
T PRK06222 89 LGKPSEIEK-FGTVVCVGGGVGIAPVYPIAKALKE------AGNKVITIIGARNKD-LLILEDEMKAVSDE-----LYV- 154 (281)
T ss_pred CCCCcccCC-CCeEEEEeCcCcHHHHHHHHHHHHH------CCCeEEEEEecCCHH-HhhcHHHHHhhCCe-----EEE-
Confidence 997654433 5799999999999999999998764 235799999999999 99999999988652 222
Q ss_pred EecCCC--CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 477 FSREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 477 ~Sr~~~--~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
.+.++. .+++|++.+.+.... ......||+||| ++|++++.+.+.+..
T Consensus 155 ~~~d~~~g~~G~v~~~l~~~~~~----~~~~~~vy~CGP-~~M~~~v~~~l~~~g 204 (281)
T PRK06222 155 TTDDGSYGRKGFVTDVLKELLES----GKKVDRVVAIGP-VIMMKFVAELTKPYG 204 (281)
T ss_pred EcCCCCcCcccchHHHHHHHhhc----CCCCcEEEEECC-HHHHHHHHHHHHhcC
Confidence 233322 345666655432111 111458999999 999999999887654
No 69
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.89 E-value=5.7e-23 Score=204.61 Aligned_cols=173 Identities=17% Similarity=0.180 Sum_probs=131.7
Q ss_pred CCChhHHHHhhCCC-CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEE-EEEee
Q 008647 319 TPPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWA-PIFIR 396 (558)
Q Consensus 319 ~~~~~~~l~~~~p~-~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v-~v~~p 396 (558)
.+.+|||+.+.++. ...|+|||+|.|.. .+.++|+|+. .|..|.+|.++++| +.+ .+.+|
T Consensus 26 ~~~pGQf~~l~~~~~~~~~pySi~s~~~~-~~~~~~~vk~-----------~G~~t~~l~~l~~G------~~v~~i~gP 87 (248)
T cd06219 26 KAKPGQFVIVRADEKGERIPLTIADWDPE-KGTITIVVQV-----------VGKSTRELATLEEG------DKIHDVVGP 87 (248)
T ss_pred cCCCCcEEEEEcCCCCCccceEeEEEcCC-CCEEEEEEEe-----------CCchHHHHHhcCCC------CEeeeeecC
Confidence 45789999987442 35799999998754 5789999974 38899999999999 899 69999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.|.+.. ..+++||||+||||||+++|+++... ...+++|+||+|+.+ |++|.+||++++++ ++.+
T Consensus 88 ~G~~~~~~-~~~~~lliagG~GiaP~~~~l~~~~~------~~~~v~l~~~~r~~~-~~~~~~el~~l~~~-----~~~~ 154 (248)
T cd06219 88 LGKPSEIE-NYGTVVFVGGGVGIAPIYPIAKALKE------AGNRVITIIGARTKD-LVILEDEFRAVSDE-----LIIT 154 (248)
T ss_pred CCCCeecC-CCCeEEEEeCcccHHHHHHHHHHHHH------cCCeEEEEEEcCCHH-HhhhHHHHHhhcCe-----EEEE
Confidence 99876543 35799999999999999999999765 236899999999999 99999999999653 2222
Q ss_pred EecCCC--CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHH
Q 008647 477 FSREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 528 (558)
Q Consensus 477 ~Sr~~~--~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i 528 (558)
+++.. ..+++++.+.+... + ......||+||| ++|++.+.+.|.+.
T Consensus 155 -~~~~~~~~~g~v~~~l~~~~~---~-~~~~~~vyiCGP-~~m~~~~~~~l~~~ 202 (248)
T cd06219 155 -TDDGSYGEKGFVTDPLKELIE---S-GEKVDLVIAIGP-PIMMKAVSELTRPY 202 (248)
T ss_pred -eCCCCCCccccchHHHHHHHh---c-cCCccEEEEECC-HHHHHHHHHHHHHc
Confidence 33322 34566654433211 1 113458999999 89999999988754
No 70
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.89 E-value=5.9e-23 Score=204.77 Aligned_cols=168 Identities=20% Similarity=0.280 Sum_probs=133.9
Q ss_pred CCChhHHHHhhCCCC---CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEe
Q 008647 319 TPPIGVFFAAVAPHL---QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~---~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~ 395 (558)
...+|||+.+.+|.. .+|+|||+|+| .+.++|+|+. .|.+|++|.++++| ++|.|.+
T Consensus 31 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk~-----------~G~~t~~l~~l~~G------~~v~i~g 90 (250)
T PRK00054 31 DMKPGQFVMVWVPGVEPLLERPISISDID---KNEITILYRK-----------VGEGTKKLSKLKEG------DELDIRG 90 (250)
T ss_pred CCCCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEEE-----------cChHHHHHhcCCCC------CEEEEEc
Confidence 467999999875544 68999999998 4789999984 38899999999999 8999999
Q ss_pred eCCC-CcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEE
Q 008647 396 RPSN-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 474 (558)
Q Consensus 396 p~g~-F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~ 474 (558)
|.|. |.++. ..+++||||+||||||++|++++... ...+++|+|++|+.+ |++|.+||+++++ ++
T Consensus 91 P~G~~f~l~~-~~~~~vlIagG~GiaP~~s~l~~~~~------~~~~v~l~~~~r~~~-d~~~~~el~~~~~------~~ 156 (250)
T PRK00054 91 PLGNGFDLEE-IGGKVLLVGGGIGVAPLYELAKELKK------KGVEVTTVLGARTKD-EVIFEEEFAKVGD------VY 156 (250)
T ss_pred ccCCCCCCCC-CCCeEEEEeccccHHHHHHHHHHHHH------cCCcEEEEEEcCCHH-HhhhHHHHHhcCC------EE
Confidence 9995 88764 45799999999999999999999875 235799999999999 9999999998432 22
Q ss_pred EEEecCC--CCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 475 LAFSREG--SQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 475 ~a~Sr~~--~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+. +++. ..++++++.+.+.. .....||+||| +.|++++.+.|.+..
T Consensus 157 ~~-~~~~~~~~~g~v~~~l~~~~-------~~~~~vyvCGp-~~m~~~v~~~l~~~G 204 (250)
T PRK00054 157 VT-TDDGSYGFKGFVTDVLDELD-------SEYDAIYSCGP-EIMMKKVVEILKEKK 204 (250)
T ss_pred EE-ecCCCCCcccchhHhHhhhc-------cCCCEEEEeCC-HHHHHHHHHHHHHcC
Confidence 22 2332 13567777664321 24568999999 899999999998754
No 71
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.89 E-value=8e-23 Score=202.95 Aligned_cols=173 Identities=13% Similarity=0.113 Sum_probs=132.1
Q ss_pred CCChhHHHHhhCC---CCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEe
Q 008647 319 TPPIGVFFAAVAP---HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 319 ~~~~~~~l~~~~p---~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~ 395 (558)
...+|||+.+.+| ....|+|||+|.|.. .+.++|+|+. .|.+|+||.++++| +.+.|.+
T Consensus 24 ~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~-~~~l~l~i~~-----------~G~~t~~l~~~~~G------~~l~i~g 85 (243)
T cd06192 24 LFRPGQFVFLRNFESPGLERIPLSLAGVDPE-EGTISLLVEI-----------RGPKTKLIAELKPG------EKLDVMG 85 (243)
T ss_pred cCCCCCeEEEecCCCCCceeeeeEeeecCCC-CCEEEEEEEE-----------cCchHHHHHhCCCC------CEEEEEc
Confidence 4578999998853 446799999999854 5789999874 38899999999999 8999999
Q ss_pred eCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEE
Q 008647 396 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 475 (558)
Q Consensus 396 p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~ 475 (558)
|.|.|.+..+..+++||||+|||||||++|+++... ...+++|+||+|+.+ |.+|.+||+++. . ...
T Consensus 86 P~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~------~~~~v~l~~~~r~~~-d~~~~~el~~~~----~--~~~ 152 (243)
T cd06192 86 PLGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAA------NGNKVTVLAGAKKAK-EEFLDEYFELPA----D--VEI 152 (243)
T ss_pred cCCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHH------CCCeEEEEEecCcHH-HHHHHHHHHhhc----C--eEE
Confidence 999766554446799999999999999999998775 246899999999999 999999998872 1 222
Q ss_pred EEecCCC--CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 476 AFSREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 476 a~Sr~~~--~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
..++++. ..+++++... .+ . ......+|+||| ++|++++++.|.+.+
T Consensus 153 ~~~~~~~~~~~g~v~~~~~----~~-~-~~~~~~v~icGp-~~mv~~~~~~l~~~g 201 (243)
T cd06192 153 WTTDDGELGLEGKVTDSDK----PI-P-LEDVDRIIVAGS-DIMMKAVVEALDEWL 201 (243)
T ss_pred EEecCCCCccceeechhhh----hh-h-cccCCEEEEECC-HHHHHHHHHHHHhhc
Confidence 3344332 2344443210 10 0 123468999999 899999999998865
No 72
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.88 E-value=1.5e-22 Score=193.96 Aligned_cols=187 Identities=19% Similarity=0.329 Sum_probs=148.5
Q ss_pred CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCCCCcCCCCCCCCEEEE
Q 008647 334 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMV 413 (558)
Q Consensus 334 ~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F~lp~~~~~plilI 413 (558)
.-|+||+||-|.+ .+.+.|-|++-.-+-.+.....|.||+|+..|++| |+|.|+||+|.|... +..+++|||
T Consensus 210 ~~rAYSmAsYPeE-~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpG------DKvtisGPfGEfFaK-dtdaemvFi 281 (410)
T COG2871 210 IIRAYSMASYPEE-KGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPG------DKVTISGPFGEFFAK-DTDAEMVFI 281 (410)
T ss_pred HHHHhhhhcChhh-cCeEEEEEEeccCCCCCCCCCccceeeeEEeecCC------CeEEEeccchhhhhc-cCCCceEEE
Confidence 4599999999977 67888888876433333456789999999999999 999999999987766 457899999
Q ss_pred ccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCCCc------cch
Q 008647 414 GPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQK------EYV 487 (558)
Q Consensus 414 a~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~~k------~yv 487 (558)
+||.|.|||||-+-..+.+. ...+++.++||+|+.. +.+|++++++++++.++|+.|+++|.+..+. +++
T Consensus 282 gGGAGmapmRSHIfDqL~rl---hSkRkis~WYGARS~r-E~fY~Ed~d~L~ae~pNF~wH~aLSdplpEDnW~g~TgFi 357 (410)
T COG2871 282 GGGAGMAPMRSHIFDQLKRL---HSKRKISFWYGARSLR-EMFYQEDFDQLQAENPNFHWHLALSDPLPEDNWDGYTGFI 357 (410)
T ss_pred ecCcCcCchHHHHHHHHHhh---cccceeeeeeccchHH-HhHHHHHHHHHHhhCCCcEEEEEecCCCCcCCcccchhHH
Confidence 99999999999776666532 2568999999999999 9999999999999999999999999876532 333
Q ss_pred hhhhHhcHHHHHHhh-hCCCEEEEeCCCcchHHHHHHHHHHHHHHccCC
Q 008647 488 QHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQEQENV 535 (558)
Q Consensus 488 q~~l~~~~~~l~~~~-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~ 535 (558)
...+.++ .+.++- .++..+|+||| +-|..+|.+.|.+++++..++
T Consensus 358 hnv~~en--~Lk~h~aPEDceyYmCGP-p~mNasvikmL~dlGVE~enI 403 (410)
T COG2871 358 HNVLYEN--YLKDHEAPEDCEYYMCGP-PLMNASVIKMLKDLGVERENI 403 (410)
T ss_pred HHHHHhh--hhhcCCCchheeEEeeCc-chhhHHHHHHHHhcCccccce
Confidence 3333222 111111 24679999999 889999999999998766543
No 73
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.88 E-value=8.9e-23 Score=202.77 Aligned_cols=177 Identities=16% Similarity=0.245 Sum_probs=138.6
Q ss_pred ChhHHHHhhCCC----CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEe
Q 008647 321 PIGVFFAAVAPH----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 321 ~~~~~l~~~~p~----~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~ 395 (558)
.+|||.-+.++. +.|+|||||++... .++++.||. .|..|.-|.+ +++| +++.+.+
T Consensus 244 qaGQFAfLk~~~~~~~~~~HPFTIa~s~~~--sel~FsIK~-----------LGD~Tk~l~dnLk~G------~k~~vdG 304 (438)
T COG4097 244 QAGQFAFLKIEIEEFRMRPHPFTIACSHEG--SELRFSIKA-----------LGDFTKTLKDNLKVG------TKLEVDG 304 (438)
T ss_pred cCCceEEEEeccccccCCCCCeeeeeCCCC--ceEEEEehh-----------hhhhhHHHHHhccCC------ceEEEec
Confidence 467876554443 45999999999753 479999984 4999999999 9999 8999999
Q ss_pred eCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEE
Q 008647 396 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 475 (558)
Q Consensus 396 p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~ 475 (558)
|+|.|......+ ..|+||||+|||||+|+++..... ....++.|||++|+.+ +.+|.+||++++++.+++.++.
T Consensus 305 PYG~F~~~~g~~-~QVWIAGGIGITPFis~l~~l~~~----~s~~~V~L~Y~~~n~e-~~~y~~eLr~~~qkl~~~~lHi 378 (438)
T COG4097 305 PYGKFDFERGLN-TQVWIAGGIGITPFISMLFTLAER----KSDPPVHLFYCSRNWE-EALYAEELRALAQKLPNVVLHI 378 (438)
T ss_pred CcceeecccCCc-ccEEEecCcCcchHHHHHHhhccc----ccCCceEEEEEecCCc-hhHHHHHHHHHHhcCCCeEEEE
Confidence 999998875432 389999999999999999987652 2568999999999999 9999999999999888877776
Q ss_pred EEecCCCCccchh-hhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHHH
Q 008647 476 AFSREGSQKEYVQ-HKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQE 531 (558)
Q Consensus 476 a~Sr~~~~k~yvq-~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~ 531 (558)
. |++.++|+. +.+....+. .....||+||| .+|++++++.|++...+
T Consensus 379 i---DSs~~g~l~~e~ler~~~~-----~~~~sv~fCGP-~~m~dsL~r~l~~~~~~ 426 (438)
T COG4097 379 I---DSSKDGYLDQEDLERYPDR-----PRTRSVFFCGP-IKMMDSLRRDLKKQNVP 426 (438)
T ss_pred e---cCCCCCccCHHHhhccccc-----cCcceEEEEcC-HHHHHHHHHHHHHcCCC
Confidence 3 333456663 333332211 12348999999 89999999999876543
No 74
>PRK05802 hypothetical protein; Provisional
Probab=99.88 E-value=1.1e-22 Score=208.91 Aligned_cols=170 Identities=11% Similarity=0.067 Sum_probs=128.6
Q ss_pred CChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEee
Q 008647 320 PPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIR 396 (558)
Q Consensus 320 ~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p 396 (558)
+.+|||+.+..|. ...|+|||+|+|.. .+.++|+|++ .|..|++|+++++| +.|.|.+|
T Consensus 95 ~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~-~g~l~l~ik~-----------~G~~T~~L~~l~~G------d~l~v~GP 156 (320)
T PRK05802 95 VYPGSFVFLRNKNSSSFFDVPISIMEADTE-ENIIKVAIEI-----------RGVKTKKIAKLNKG------DEILLRGP 156 (320)
T ss_pred CCCCceEEEEEcCCCCEeEEeeEecccCCC-CCEEEEEEEe-----------cChhHHHHhcCCCC------CEEEEeCC
Confidence 3689999987442 34599999999865 5889999985 39999999999999 89999999
Q ss_pred CC--CCcCC---CCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcc
Q 008647 397 PS--NFKLP---ANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVIS 471 (558)
Q Consensus 397 ~g--~F~lp---~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~ 471 (558)
.| .|.++ ....+++||||+|+||||++++++++.. + ..+++|+||+|+++ |++|.++|+++..+...+
T Consensus 157 ~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~---~---~~~v~li~g~r~~~-~~~~~~el~~~~~~~~~~ 229 (320)
T PRK05802 157 YWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYS---N---GNKIIVIIDKGPFK-NNFIKEYLELYNIEIIEL 229 (320)
T ss_pred CCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHH---c---CCcEEEEEeCCCHH-HHHHHHHHHHhhCceEEE
Confidence 95 46653 2334689999999999999999998875 2 25899999999999 999999999986542221
Q ss_pred EEEEEEecCCC----CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHH
Q 008647 472 ELILAFSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 528 (558)
Q Consensus 472 ~~~~a~Sr~~~----~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i 528 (558)
.+..++. .++++++.+.+. +...||+||| +.|++.|.+.+.++
T Consensus 230 ----~~~ddG~~~~~~~g~v~~~l~~~---------~~~~vy~CGP-~~M~k~v~~~l~~~ 276 (320)
T PRK05802 230 ----NLLDDGELSEEGKDILKEIIKKE---------DINLIHCGGS-DILHYKIIEYLDKL 276 (320)
T ss_pred ----EecccCCCCccccchHHHHhcCC---------CCCEEEEECC-HHHHHHHHHHHhhh
Confidence 1112221 123344433211 2368999999 89999999998874
No 75
>PLN02252 nitrate reductase [NADPH]
Probab=99.87 E-value=2.4e-22 Score=229.12 Aligned_cols=196 Identities=15% Similarity=0.158 Sum_probs=143.6
Q ss_pred CCChhHHHHhhCC--C-CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEe
Q 008647 319 TPPIGVFFAAVAP--H-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 319 ~~~~~~~l~~~~p--~-~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~ 395 (558)
.+++|||+.+.++ . ...|+|||+|.+.. .+.++|+|+++...........|.+|++|.++++| +.|.|.+
T Consensus 664 gl~pGQhV~l~~~~~g~~~~R~YSpaS~~~~-~g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~vG------d~V~V~G 736 (888)
T PLN02252 664 GLPVGKHVFLCATINGKLCMRAYTPTSSDDE-VGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPIG------DTIDVKG 736 (888)
T ss_pred CCCCCCEEEEEEecCCeEEEeeeEecccCCC-CCEEEEEEEEEeccccCccCCCCchhhHHhcCCCC------CEEEEec
Confidence 3478998888643 2 25799999999865 57899999976211000111359999999999999 8999999
Q ss_pred eCCCCcC--------CCC--CCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHH
Q 008647 396 RPSNFKL--------PAN--PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFE 465 (558)
Q Consensus 396 p~g~F~l--------p~~--~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~ 465 (558)
|.|.|.+ +.. ..++++|||+|||||||++|+++++.. .....+++||||+|+.+ |++|++||++++
T Consensus 737 P~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~---~~d~t~i~Liyg~Rt~~-Dil~~eEL~~la 812 (888)
T PLN02252 737 PLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRD---PEDKTEMSLVYANRTED-DILLREELDRWA 812 (888)
T ss_pred CccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhc---cCCCCcEEEEEEECCHH-HhhHHHHHHHHH
Confidence 9997643 322 247999999999999999999998752 22457899999999999 999999999999
Q ss_pred HcC-CccEEEEEEecCC-C----CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHH-HHHHHHHHH
Q 008647 466 EEG-VISELILAFSREG-S----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARD-VHRTLHTIV 529 (558)
Q Consensus 466 ~~~-~~~~~~~a~Sr~~-~----~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~-v~~~L~~i~ 529 (558)
+.. ..++++.++|++. + ..+++.+.+.+. .......+..+|+||| ++|++. +...|.+++
T Consensus 813 ~~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~---~l~~~~~~~~vyiCGP-p~Mi~~av~~~L~~~G 879 (888)
T PLN02252 813 AEHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLRE---HLPEGGDETLALMCGP-PPMIEFACQPNLEKMG 879 (888)
T ss_pred HhCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHH---hcccCCCCeEEEEeCC-HHHHHHHHHHHHHHcC
Confidence 876 5678888888753 2 235555433211 1000113568999999 999984 777776654
No 76
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.85 E-value=2.6e-21 Score=229.36 Aligned_cols=186 Identities=17% Similarity=0.259 Sum_probs=142.8
Q ss_pred CCChhHHHHhhCC--C-CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEe
Q 008647 319 TPPIGVFFAAVAP--H-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 319 ~~~~~~~l~~~~p--~-~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~ 395 (558)
.+.+|||+.+.++ + ...|+|||+|.|.. .+.++|+|+. ..|.+|+||+++++| +.|.|.+
T Consensus 947 ~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~-~~~i~l~Vr~----------~~G~~S~~L~~l~~G------d~v~v~g 1009 (1167)
T PTZ00306 947 GLTLGQFIAIRGDWDGQQLIGYYSPITLPDD-LGVISILARG----------DKGTLKEWISALRPG------DSVEMKA 1009 (1167)
T ss_pred CCCCCeEEEEEeeeCCeEEEEEeccCCCCCC-CCeEEEEEEc----------CCChhHHHHhhCCCC------CEEEEeC
Confidence 3578999999743 1 23599999999964 5789988862 149999999999999 8999999
Q ss_pred eCC----------CCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHH
Q 008647 396 RPS----------NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFE 465 (558)
Q Consensus 396 p~g----------~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~ 465 (558)
|.| .|.++....+|+||||+|||||||+||+++++... ......+++||||+|+.+ |++|++||++|+
T Consensus 1010 p~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~-~~~~~~~i~Llyg~r~~~-dl~~~~eL~~l~ 1087 (1167)
T PTZ00306 1010 CGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKP-YVDSIESIRLIYAAEDVS-ELTYRELLESYR 1087 (1167)
T ss_pred CcCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCc-ccCCCceEEEEEEeCCHH-HhhHHHHHHHHH
Confidence 655 45565555689999999999999999999877510 001246899999999999 999999999999
Q ss_pred HcCC-ccEEEEEEecCCC----CccchhhhhHhcHHHHHHhhh---CCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 466 EEGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLS---KEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 466 ~~~~-~~~~~~a~Sr~~~----~k~yvq~~l~~~~~~l~~~~~---~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
++.+ .+++++++|++++ ..+++++.+. .+.+. .+..||+||| ++|++++.+.|++...
T Consensus 1088 ~~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l------~~~l~~~~~~~~vyiCGP-~~mv~~v~~~L~~~G~ 1153 (1167)
T PTZ00306 1088 KENPGKFKCHFVLNNPPEGWTDGVGFVDRALL------QSALQPPSKDLLVAICGP-PVMQRAVKADLLALGY 1153 (1167)
T ss_pred HHCCCCEEEEEEECCCCcccCCCCCCCCHHHH------HHhcCCCCCCeEEEEeCC-HHHHHHHHHHHHHcCC
Confidence 8765 5789999997643 2355554321 12221 3568999999 9999999999877543
No 77
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.82 E-value=4.6e-20 Score=211.05 Aligned_cols=174 Identities=17% Similarity=0.190 Sum_probs=134.7
Q ss_pred CCChhHHHHhhCCCC-CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEE-EEEee
Q 008647 319 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWA-PIFIR 396 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~-~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v-~v~~p 396 (558)
.+.+|||+.+.++.. .+|+|||+|.+.. .+.++|+|+++ |.+|.+|+++++| +.+ .|.+|
T Consensus 27 ~~~pGQFv~l~~~~~~~~rp~Si~~~~~~-~g~i~~~vk~v-----------G~~T~~L~~l~~G------d~v~~v~GP 88 (752)
T PRK12778 27 SRKPGQFVIVRVGEKGERIPLTIADADPE-KGTITLVIQEV-----------GLSTTKLCELNEG------DYITDVVGP 88 (752)
T ss_pred cCCCCeeEEEEeCCCCCeeEEEeeeeCCC-CCEEEEEEEEc-----------CchHHHHhcCCCC------CEeCeEeCC
Confidence 356899999975543 4689999999865 57899999854 8999999999999 899 79999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.|..... .++++|||+|+|||||++++++... ...+++||||+|+.+ |++|.+||++++.+ ++++
T Consensus 89 ~G~~~~~~~-~~~~llvaGG~GiaPl~~l~~~l~~------~~~~v~l~~g~r~~~-~l~~~~el~~~~~~-----~~~~ 155 (752)
T PRK12778 89 LGNPSEIEN-YGTVVCAGGGVGVAPMLPIVKALKA------AGNRVITILGGRSKE-LIILEDEMRESSDE-----VIIM 155 (752)
T ss_pred CCCCccCCC-CCeEEEEECCEeHHHHHHHHHHHHH------CCCeEEEEeccCCHH-HhhhHHHHHhhcCe-----EEEE
Confidence 997765533 4799999999999999999998775 235899999999999 99999999988652 2222
Q ss_pred EecCCC--CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 477 FSREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 477 ~Sr~~~--~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+.+++ .+++|++.+.+.... ......||+||| ++|++.+.+.+.+..
T Consensus 156 -t~dg~~g~~G~v~~~l~~~~~~----~~~~~~vy~CGP-~~M~~~v~~~l~~~g 204 (752)
T PRK12778 156 -TDDGSYGRKGLVTDGLEEVIKR----ETKVDKVFAIGP-AIMMKFVCLLTKKYG 204 (752)
T ss_pred -ECCCCCCCcccHHHHHHHHhhc----CCCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 33332 356777765432211 112357999999 999999999887643
No 78
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.81 E-value=3.1e-20 Score=183.40 Aligned_cols=172 Identities=16% Similarity=0.153 Sum_probs=122.9
Q ss_pred CChhHHHHhhCCC----------------------CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhh
Q 008647 320 PPIGVFFAAVAPH----------------------LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK 377 (558)
Q Consensus 320 ~~~~~~l~~~~p~----------------------~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~ 377 (558)
..+|||+.+.+|. ...|+|||+|.+.. .++++|.|+++. ..|.+|+||+
T Consensus 27 ~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~-~~~l~~~v~~~~--------~~G~~s~~l~ 97 (235)
T cd06193 27 DGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPE-AGELDIDFVLHG--------DEGPASRWAA 97 (235)
T ss_pred CCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCC-CCEEEEEEEeCC--------CCCchHHHHh
Confidence 4679999987553 34699999998754 688999997542 0289999999
Q ss_pred hcCCCCCCCCccEEEEEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCcccc
Q 008647 378 NAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIY 457 (558)
Q Consensus 378 ~l~~G~~~~~~~~v~v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y 457 (558)
++++| +.|.+.+|.|.|.++. ..+++||||+||||||+++|+++... ..+++++|++|+.+ |.++
T Consensus 98 ~l~~G------d~v~v~gP~G~~~~~~-~~~~~vlia~GtGi~p~~~il~~~~~-------~~~~~~~~~~~~~~-d~~~ 162 (235)
T cd06193 98 SAQPG------DTLGIAGPGGSFLPPP-DADWYLLAGDETALPAIAAILEELPA-------DARGTALIEVPDAA-DEQP 162 (235)
T ss_pred hCCCC------CEEEEECCCCCCCCCC-CcceEEEEeccchHHHHHHHHHhCCC-------CCeEEEEEEECCHH-Hccc
Confidence 99999 9999999999988764 35799999999999999999997542 26899999999986 6554
Q ss_pred HHHHHHHHHcCCccEEEEEEecCCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHH
Q 008647 458 EDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 528 (558)
Q Consensus 458 ~~el~~~~~~~~~~~~~~a~Sr~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i 528 (558)
.+++ ..++++.+.+++. ........+.. . .........+|+||| ++|++.+++.|.+.
T Consensus 163 l~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~---~-~~~~~~~~~vyicGp-~~mv~~v~~~l~~~ 220 (235)
T cd06193 163 LPAP-------AGVEVTWLHRGGA-EAGELALLAVR---A-LAPPAGDGYVWIAGE-AGAVRALRRHLREE 220 (235)
T ss_pred cCCC-------CCcEEEEEeCCCC-CcchhHHHHHh---c-ccCCCCCeEEEEEcc-HHHHHHHHHHHHHc
Confidence 3332 1335555554433 22111110000 0 000123579999999 89999999888653
No 79
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.80 E-value=1.9e-19 Score=174.64 Aligned_cols=164 Identities=20% Similarity=0.232 Sum_probs=123.2
Q ss_pred CCCChhHHHHhhCCCC----CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcC------CCCCCCC
Q 008647 318 ATPPIGVFFAAVAPHL----QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAI------PLEGNGD 387 (558)
Q Consensus 318 ~~~~~~~~l~~~~p~~----~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~------~G~~~~~ 387 (558)
..+.+|||+.+.+|.. ..|+|||+|.|....+.++|+|+.. .|..|..+..+. .|
T Consensus 23 ~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~----------~G~~t~~~~~~~~~~~~~~~----- 87 (210)
T cd06186 23 FKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAK----------KGFTTRLLRKALKSPGGGVS----- 87 (210)
T ss_pred CccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEec----------CChHHHHHHHHHhCcCCCce-----
Confidence 3567899999886754 6899999999864347899999853 388888888776 56
Q ss_pred ccEEEEEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCc-cccHHHHHHHHH
Q 008647 388 CSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMD-FIYEDELNNFEE 466 (558)
Q Consensus 388 ~~~v~v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d-~~y~~el~~~~~ 466 (558)
+.+.+.+|+|.+..+.....++||||+||||||++++++++.....+.....++.|+|++|+.+ | ..|.++|.+..+
T Consensus 88 -~~v~v~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~-~~~~~~~~l~~~~~ 165 (210)
T cd06186 88 -LKVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDRE-DLEWFLDELRAAQE 165 (210)
T ss_pred -eEEEEECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHH-HhHHHHHHHHhhhh
Confidence 8999999999876443446799999999999999999999876321101357899999999998 7 579999975111
Q ss_pred cCCccEEEEEEecCCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHH
Q 008647 467 EGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 527 (558)
Q Consensus 467 ~~~~~~~~~a~Sr~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~ 527 (558)
-....++.+.+++ ||+||| .+|+++++....+
T Consensus 166 ~~~~~~~~i~~T~----------------------------v~~CGp-~~~~~~~~~~~~~ 197 (210)
T cd06186 166 LEVDGEIEIYVTR----------------------------VVVCGP-PGLVDDVRNAVAK 197 (210)
T ss_pred ccCCceEEEEEee----------------------------EEEECc-hhhccHHHHHHhh
Confidence 1111123443443 999999 8899999887766
No 80
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.79 E-value=7.4e-19 Score=203.23 Aligned_cols=184 Identities=13% Similarity=0.099 Sum_probs=132.6
Q ss_pred CCChhHHHHhhCC-CCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEE-EEee
Q 008647 319 TPPIGVFFAAVAP-HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAP-IFIR 396 (558)
Q Consensus 319 ~~~~~~~l~~~~p-~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~-v~~p 396 (558)
.+.+|||+.+..+ +...|+|||+|.|.. .+.++|+|+++ |..|.+|.++++| +.+. |.+|
T Consensus 676 ~~~PGQFv~L~~~~~ge~rP~SIas~~~~-~g~i~l~Vk~v-----------G~~T~~L~~lk~G------d~l~~I~GP 737 (944)
T PRK12779 676 SAQAGQFVRVLPWEKGELIPLTLADWDAE-KGTIDLVVQGM-----------GTSSLEINRMAIG------DAFSGIAGP 737 (944)
T ss_pred cCCCCceEEEEeCCCCCEEeEEccCCCCC-CCEEEEEEEee-----------ccHHHHHhcCCCc------CEEeeeecC
Confidence 4568999999843 234599999998754 57899999853 8889999999999 8995 9999
Q ss_pred CCCC-cCCC-CCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHH---HHHHHHcCC-c
Q 008647 397 PSNF-KLPA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDE---LNNFEEEGV-I 470 (558)
Q Consensus 397 ~g~F-~lp~-~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~e---l~~~~~~~~-~ 470 (558)
.|.| .++. ...+++||||||+||||+++|+++... ...+++|+||+|+++ |++|.++ |++|++... .
T Consensus 738 lG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~------~g~~V~li~G~Rs~e-dl~~~del~~L~~la~~~~~~ 810 (944)
T PRK12779 738 LGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLR------LGNHVTLISGFRAKE-FLFWTGDDERVGKLKAEFGDQ 810 (944)
T ss_pred CCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHH------CCCCEEEEEEeCCHH-HhhhHHHHHHHHHHHHHcCCC
Confidence 9965 4443 224699999999999999999998765 236899999999998 8888766 455665543 3
Q ss_pred cEEEEEEecCCC--CccchhhhhHhcHHHHHHhhh-CCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 471 SELILAFSREGS--QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 471 ~~~~~a~Sr~~~--~k~yvq~~l~~~~~~l~~~~~-~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
++++++ +.++. .+++|++.+.+........-. ....||+||| ++|++.+.+.|.+..
T Consensus 811 ~~v~~t-tddgs~G~~G~Vt~~l~~ll~~~~~~~~~~~~~Vy~CGP-~~Mmkav~~~l~~~G 870 (944)
T PRK12779 811 LDVIYT-TNDGSFGVKGFVTGPLEEMLKANQQGKGRTIAEVIAIGP-PLMMRAVSDLTKPYG 870 (944)
T ss_pred eEEEEE-ecCCCCCCccccChHHHHHHHhcccccccCCcEEEEECC-HHHHHHHHHHHHHcC
Confidence 344433 43332 357777765432211000000 1358999999 999999999887654
No 81
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.74 E-value=3.3e-18 Score=147.98 Aligned_cols=104 Identities=23% Similarity=0.439 Sum_probs=81.0
Q ss_pred EEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCc-cEEEEEEecCCC----Cccc
Q 008647 412 MVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVI-SELILAFSREGS----QKEY 486 (558)
Q Consensus 412 lIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~-~~~~~a~Sr~~~----~k~y 486 (558)
|||||||||||+||++++... ....+++|+||+|+.+ |++|.++|+++++.... ++++.+ ++.+. .++|
T Consensus 1 lIagGtGIaP~~s~l~~~~~~----~~~~~v~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~ 74 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLER----NDNRKVTLFYGARTPE-DLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGR 74 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHH----TCTSEEEEEEEESSGG-GSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESS
T ss_pred CeecceeHHHHHHHHHHHHHh----CCCCCEEEEEEEcccc-cccchhHHHHHHhhcccccccccc-cccccccCCceee
Confidence 799999999999999998873 2678999999999999 99999999999988765 334433 33332 3678
Q ss_pred hhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHH
Q 008647 487 VQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHR 523 (558)
Q Consensus 487 vq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~ 523 (558)
|++.+.+.... ......+..||+||| ++|+++|++
T Consensus 75 v~~~~~~~~~~-~~~~~~~~~v~iCGp-~~m~~~v~~ 109 (109)
T PF00175_consen 75 VTDLLLEDLLP-EKIDPDDTHVYICGP-PPMMKAVRK 109 (109)
T ss_dssp HHHHHHHHHHH-HHHCTTTEEEEEEEE-HHHHHHHHH
T ss_pred hhHHHHHhhcc-cccCCCCCEEEEECC-HHHHHHhcC
Confidence 88888554322 122346889999999 999999874
No 82
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.74 E-value=7.4e-18 Score=196.58 Aligned_cols=173 Identities=15% Similarity=0.157 Sum_probs=129.9
Q ss_pred CCChhHHHHhhCCC-CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHh-hhcCCCCCCCCccEE-EEEe
Q 008647 319 TPPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWM-KNAIPLEGNGDCSWA-PIFI 395 (558)
Q Consensus 319 ~~~~~~~l~~~~p~-~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L-~~l~~G~~~~~~~~v-~v~~ 395 (558)
...+|||+.+.++. ..+|+|||++.+.. .+.++|.|++ .|..|.|| .++++| +.+ .+.+
T Consensus 27 ~~~PGQFV~l~~~~~~errplSIa~~~~~-~g~i~l~vk~-----------vG~~T~~L~~~lk~G------d~l~~v~G 88 (1006)
T PRK12775 27 SAEPGHFVMLRLYEGAERIPLTVADFDRK-KGTITMVVQA-----------LGKTTREMMTKFKAG------DTFEDFVG 88 (1006)
T ss_pred CCCCCeeEEEEeCCCCeeEEEEecCcCCC-CCEEEEEEEe-----------cCcHHHHHHhcCCCC------CEEeeeec
Confidence 34689999997543 34699999998754 5788888874 38999998 479999 888 7999
Q ss_pred eCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEE
Q 008647 396 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 475 (558)
Q Consensus 396 p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~ 475 (558)
|.|.+.... ..+++||||||+||||+++|+++... ...+++++||+|+.+ +++|.+||+++... +++
T Consensus 89 PlG~~~~~~-~~~~vllVaGGiGIAPl~s~~r~l~~------~g~~v~li~g~R~~~-~l~~~del~~~~~~-----~~v 155 (1006)
T PRK12775 89 PLGLPQHID-KAGHVVLVGGGLGVAPVYPQLRAFKE------AGARTTGIIGFRNKD-LVFWEDKFGKYCDD-----LIV 155 (1006)
T ss_pred CCCCCCCCC-CCCeEEEEEEhHHHHHHHHHHHHHHh------CCCcEEEEEeCCChH-HcccHHHHHhhcCc-----EEE
Confidence 999654332 24689999999999999999998764 235799999999998 99999999887532 232
Q ss_pred EEecCCC--CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 476 AFSREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 476 a~Sr~~~--~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+ +.+++ .+++|++.+.+.... .....||+||| +.|++.+.+.+++..
T Consensus 156 ~-tddgs~G~~G~vt~~l~~~l~~-----~~~d~vy~CGP-~~Mm~av~~~~~~~g 204 (1006)
T PRK12775 156 C-TDDGSYGKPGFVTAALKEVCEK-----DKPDLVVAIGP-LPMMNACVETTRPFG 204 (1006)
T ss_pred E-ECCCCCCCCCChHHHHHHHhcc-----CCCCEEEEECC-HHHHHHHHHHHHHCC
Confidence 2 33332 357777665442210 12358999999 899999999887543
No 83
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=99.70 E-value=1.1e-17 Score=152.23 Aligned_cols=94 Identities=34% Similarity=0.511 Sum_probs=83.0
Q ss_pred CCcEEEEEeccCCCCCCCccHH-HHHHHHhcCC--CCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeec
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAA-RFYKWFTEGN--DRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 78 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~-~f~~~l~~~~--~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~ 78 (558)
.++.+||++||||+|+||+|+. .|++|+.... .....|++++|||||+||+.|.+||.+++.++++|+++||+++.+
T Consensus 45 ~~~~~i~~~sT~~~g~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~~~~~~ 124 (143)
T PF00258_consen 45 EYDLLIFGVSTYGEGEPPDNAKEFFEELLELKGKELSKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGAKRVGP 124 (143)
T ss_dssp TTSEEEEEEEEETTTEESGGGHHHHHHHHHHHHHGGGGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTEEEESS
T ss_pred hhceeeEeecccCCCcchhhhhhhhhhccccccccccccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCCEEEEC
Confidence 4679999999999999999999 6677775431 112348999999999999999889999999999999999999999
Q ss_pred CcccCCCC--CchhHHHHH
Q 008647 79 LGLGDDDQ--CIEDDFTAW 95 (558)
Q Consensus 79 ~~~~d~~~--~~~~~~~~W 95 (558)
++++|+.+ +.++.|++|
T Consensus 125 ~~~~d~~~~~~~e~~~~~W 143 (143)
T PF00258_consen 125 LLEIDEAPSDDLEEDFEEW 143 (143)
T ss_dssp SEEEETTTHGGHHHHHHHH
T ss_pred cEEEecCCCcChHHHHhCC
Confidence 99999998 789999999
No 84
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.60 E-value=5e-15 Score=165.01 Aligned_cols=185 Identities=13% Similarity=0.101 Sum_probs=127.0
Q ss_pred CCCChhHHHHhhCCCC---CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cC----CCCCCCCcc
Q 008647 318 ATPPIGVFFAAVAPHL---QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AI----PLEGNGDCS 389 (558)
Q Consensus 318 ~~~~~~~~l~~~~p~~---~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~----~G~~~~~~~ 389 (558)
.+..+|||+.+.+|.. +.|+|||+|+|..+++.++++|++. |..|+.|.+ ++ +|.....+.
T Consensus 337 ~~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~-----------gG~T~~L~~~i~~~l~~g~~~~~~~ 405 (722)
T PLN02844 337 LKYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCE-----------GGWTNSLYNKIQAELDSETNQMNCI 405 (722)
T ss_pred CCcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeC-----------CCchHHHHHHHHhhccCCCCcccce
Confidence 4567899999876653 5799999998754467889988742 555666654 32 231111124
Q ss_pred EEEEEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcC-CCCCCeEEEEeccCCCCccccHHHHHHHH---
Q 008647 390 WAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNFE--- 465 (558)
Q Consensus 390 ~v~v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~-~~~~~i~L~~G~R~~~~d~~y~~el~~~~--- 465 (558)
++.+.+|+|.+..+....++++||||||||||++|++++........ ....++.|+|++|+.+ |..|.+++....
T Consensus 406 ~v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~~-dL~~~del~~~l~~~ 484 (722)
T PLN02844 406 PVAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKSQ-DICLLNPISSLLLNQ 484 (722)
T ss_pred EEEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhhHHHHHHHhHHh
Confidence 78999999988765444579999999999999999999987521100 1236899999999999 999999986321
Q ss_pred -HcCCccEEEEEEecCCCCccchhhhhHhc--HHHHHHhhhCCCEEEEeCCCc
Q 008647 466 -EEGVISELILAFSREGSQKEYVQHKMMDK--AAQLWSLLSKEGYLYVCGDAK 515 (558)
Q Consensus 466 -~~~~~~~~~~a~Sr~~~~k~yvq~~l~~~--~~~l~~~~~~~~~iyvCGp~~ 515 (558)
.+....+++...+|+......+++.+... .+.+. +-.+..++.+||+..
T Consensus 485 ~~~~~~lkl~iyVTRE~~~~~rl~~~i~~~~~~~~~~-~~~~~~~~~i~G~~~ 536 (722)
T PLN02844 485 SSNQLNLKLKVFVTQEEKPNATLRELLNQFSQVQTVN-FSTKCSRYAIHGLES 536 (722)
T ss_pred HHHhcCceEEEEECCCCCCCCchhhHhhccchhhhcC-CCCCCCceEEeCCCc
Confidence 12234578888999876555666655442 11111 223457899999953
No 85
>PRK07308 flavodoxin; Validated
Probab=99.60 E-value=5.3e-15 Score=135.16 Aligned_cols=94 Identities=23% Similarity=0.268 Sum_probs=81.9
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.++.|||++||||+|++|+++..|+++|.... +++++|+|||+||+.|+.||.+++.++++|.++||+.+.+..+
T Consensus 48 ~~d~vi~g~~t~g~G~~p~~~~~fl~~l~~~~-----l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~~~~ 122 (146)
T PRK07308 48 DADIAIVATYTYGDGELPDEIVDFYEDLADLD-----LSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAESVK 122 (146)
T ss_pred cCCEEEEEeCccCCCCCCHHHHHHHHHHhcCC-----CCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccCcEE
Confidence 57899999999999999999999999997764 7899999999999999999999999999999999999999998
Q ss_pred cCCCCC--chhHHHHHHHHHH
Q 008647 82 GDDDQC--IEDDFTAWRELVW 100 (558)
Q Consensus 82 ~d~~~~--~~~~~~~W~~~l~ 100 (558)
.+...+ ......+|.++|.
T Consensus 123 ~~~~p~~~~~~~~~~~~~~l~ 143 (146)
T PRK07308 123 VDLAAEDEDIERLEAFAEELA 143 (146)
T ss_pred EeCCCCHHHHHHHHHHHHHHH
Confidence 887762 3444556665543
No 86
>PLN02292 ferric-chelate reductase
Probab=99.59 E-value=6.8e-15 Score=163.47 Aligned_cols=179 Identities=15% Similarity=0.134 Sum_probs=122.3
Q ss_pred CCCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEE
Q 008647 318 ATPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPI 393 (558)
Q Consensus 318 ~~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~v 393 (558)
....+||++-+.+|. .+.|||||+|+|..+++.++++||. .|..|++|.+ ++.|+ ....-++.+
T Consensus 350 ~~~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~-----------~G~~T~~L~~~l~~gd-~i~~~~V~V 417 (702)
T PLN02292 350 LMYSPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKS-----------QGKWSTKLYHMLSSSD-QIDRLAVSV 417 (702)
T ss_pred CCcCCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEc-----------CCchhHHHHHhCCCCC-ccccceEEE
Confidence 345688887776564 3689999999985446789999983 3888999988 57772 111125789
Q ss_pred EeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcC-CCCCCeEEEEeccCCCCccccHHHHHH-------HH
Q 008647 394 FIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNN-------FE 465 (558)
Q Consensus 394 ~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~-~~~~~i~L~~G~R~~~~d~~y~~el~~-------~~ 465 (558)
.||+|.+..+.....+++|||||+||||+++++++..+....+ ....++.|+|++|+.+ |.++.+++.. ++
T Consensus 418 eGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~-Dl~~ld~l~~e~~~~~~l~ 496 (702)
T PLN02292 418 EGPYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSS-DLSMLDLILPTSGLETELS 496 (702)
T ss_pred ECCccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhHHHHHHHhhhhHHHHh
Confidence 9999977544334469999999999999999999987631111 0136899999999999 9998876543 22
Q ss_pred HcCCccEEEEEEecCCCCcc-chhhhhHhcHHHHHHhh-----hCCCEEEEeCCC
Q 008647 466 EEGVISELILAFSREGSQKE-YVQHKMMDKAAQLWSLL-----SKEGYLYVCGDA 514 (558)
Q Consensus 466 ~~~~~~~~~~a~Sr~~~~k~-yvq~~l~~~~~~l~~~~-----~~~~~iyvCGp~ 514 (558)
++ ...++...++|+.+.+. |-++ ..+.+.+.+ .+...+.+|||.
T Consensus 497 ~~-~~~~i~iyvTr~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~Gp~ 546 (702)
T PLN02292 497 SF-IDIQIKAFVTREKEAGVKESTG----NMNIIKTLWFKPNLSDQPISPILGPN 546 (702)
T ss_pred hc-CCceEEEEEeCCCCCCCccccc----chhhhhhhcCCCCCCCCceEEEeCCC
Confidence 33 34578888888765321 2222 222222221 145789999994
No 87
>PLN02631 ferric-chelate reductase
Probab=99.58 E-value=3.8e-15 Score=165.15 Aligned_cols=150 Identities=17% Similarity=0.170 Sum_probs=114.1
Q ss_pred CCCCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEE
Q 008647 317 SATPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAP 392 (558)
Q Consensus 317 ~~~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~ 392 (558)
..+..+|||+.+.+|. .+.|+|||+|+|...++.++|+||. .|..|++|.+ ++.++ +..++.
T Consensus 332 ~~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~-----------~Gg~T~~L~~~l~~~g---~~i~V~ 397 (699)
T PLN02631 332 GLHYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRR-----------QGSWTQKLYTHLSSSI---DSLEVS 397 (699)
T ss_pred CCcCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEc-----------CChHHHHHHHhhhcCC---CeeEEE
Confidence 3556789998887665 3679999999986446789999983 4889999987 54421 013678
Q ss_pred EEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcC-CCCCCeEEEEeccCCCCccccHHHHHHH------H
Q 008647 393 IFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNF------E 465 (558)
Q Consensus 393 v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~-~~~~~i~L~~G~R~~~~d~~y~~el~~~------~ 465 (558)
+.||+|.|..+.....++||||||+||||++|++++......++ ...+++.|+|++|+.+ |.+|.|||..+ .
T Consensus 398 VeGPYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~-dL~f~deL~~l~~~~~~l 476 (699)
T PLN02631 398 TEGPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYH-DLAFLDLIFPLDISVSDI 476 (699)
T ss_pred EECCCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHH-HhhhHHHHhhhccchhhh
Confidence 88999977665445578999999999999999999987632111 1235899999999999 99999999863 2
Q ss_pred HcCCccEEEEEEecCCC
Q 008647 466 EEGVISELILAFSREGS 482 (558)
Q Consensus 466 ~~~~~~~~~~a~Sr~~~ 482 (558)
+ ..+.++...+||+++
T Consensus 477 ~-~~ni~i~iyVTR~~~ 492 (699)
T PLN02631 477 S-RLNLRIEAYITREDK 492 (699)
T ss_pred h-cCceEEEEEEcCCCC
Confidence 2 235678889999764
No 88
>PRK12359 flavodoxin FldB; Provisional
Probab=99.53 E-value=8e-14 Score=129.88 Aligned_cols=99 Identities=17% Similarity=0.265 Sum_probs=82.2
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCc-Cc-hHHHHHHHHHHHHHHhCCCeEeec-
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNR-QY-EHFNKIGIVLDEELCKQGGARLVP- 78 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds-~y-~~f~~~~~~l~~~l~~lGa~~i~~- 78 (558)
.|+++||.+||||.|++|+++..|+..|.... |+|+++||||+||+ .| ++||.+++.++++|.+.||+.+..
T Consensus 45 ~yD~iIlG~pTw~~Gel~~d~~~~~~~l~~~d-----l~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~ 119 (172)
T PRK12359 45 QYDVLILGIPTWDFGEIQEDWEAVWDQLDDLN-----LEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYW 119 (172)
T ss_pred cCCEEEEEecccCCCcCcHHHHHHHHHHhhCC-----CCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeE
Confidence 58999999999999999999999999997765 89999999999998 69 899999999999999999987710
Q ss_pred -------------C--c------ccCCCC---CchhHHHHHHHHHHHHHHH
Q 008647 79 -------------L--G------LGDDDQ---CIEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 79 -------------~--~------~~d~~~---~~~~~~~~W~~~l~~~l~~ 105 (558)
. + ..|+.. -.+++++.|+++|.+.+..
T Consensus 120 ~~~gY~f~~s~a~~~~~~~f~gl~lD~~nq~~~t~~ri~~W~~~~~~~~~~ 170 (172)
T PRK12359 120 PTEGYEFTSSKPLTADGQLFVGLALDEVNQYDLSDERIQQWCEQILLEMAE 170 (172)
T ss_pred eCCCcccccceeeEcCCCEEEEEEEcCCCchhhhHHHHHHHHHHHHHHHHh
Confidence 0 0 112222 3679999999998776643
No 89
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=99.50 E-value=7.7e-15 Score=140.31 Aligned_cols=182 Identities=20% Similarity=0.271 Sum_probs=115.2
Q ss_pred CCCCCCChhHHHHhhC--CCC---CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCc
Q 008647 315 FPSATPPIGVFFAAVA--PHL---QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDC 388 (558)
Q Consensus 315 f~~~~~~~~~~l~~~~--p~~---~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~ 388 (558)
|.+....+|||+.+.. |++ .-|.||.++....-.+.++|.|+.+. .|++|+|+++ +++|
T Consensus 176 ~~~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~A---------~G~VS~~~H~~~KVG------ 240 (385)
T KOG3378|consen 176 FRISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRVA---------GGVVSNFVHDNLKVG------ 240 (385)
T ss_pred eeeccCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEeehh---------chhhHHHhhcccccc------
Confidence 3344557899998753 332 23555555443333678999988553 6999999998 9999
Q ss_pred cEEEEEeeCCCCcCCC---CCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHH
Q 008647 389 SWAPIFIRPSNFKLPA---NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFE 465 (558)
Q Consensus 389 ~~v~v~~p~g~F~lp~---~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~ 465 (558)
|.|.++.|.|.|.... +.++|++++|+|+||||+++|+++.+. -|..| .+...++++.
T Consensus 241 D~v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~-------------C~~~R------P~~~~~~~~~ 301 (385)
T KOG3378|consen 241 DIVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALL-------------CYSSR------PFKQWLEQLK 301 (385)
T ss_pred ceeeccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHh-------------cCCCC------cHHHHHHHHH
Confidence 8999999999998753 456899999999999999999998664 12222 2223333322
Q ss_pred HcC-CccEEEEEEecCCC--CccchhhhhHh--cHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHHH
Q 008647 466 EEG-VISELILAFSREGS--QKEYVQHKMMD--KAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQE 531 (558)
Q Consensus 466 ~~~-~~~~~~~a~Sr~~~--~k~yvq~~l~~--~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~ 531 (558)
.+. .+.++.-.||.+.+ .+.-|...+.. +.+.+-++-...++||.||| .++|+.|...|.++..+
T Consensus 302 ~K~k~~~K~~e~~~~E~s~~~~~IV~~~~~~iI~~~~L~~~~~s~~DiY~~G~-~~~M~~~~~~L~~L~~~ 371 (385)
T KOG3378|consen 302 LKYKENLKLKEFFSEESSVTKEQIVDEVMTRIINEEDLEKLDLSECDIYMLGP-NNYMRFVKQELVKLGVE 371 (385)
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhhhhhhhhcCHHHhhhcChhhCceeeeCc-HHHHHHHHHHHHHhcCC
Confidence 210 01111111222222 22223222221 12233333335789999999 88999999999998754
No 90
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=99.49 E-value=8.7e-14 Score=140.90 Aligned_cols=97 Identities=29% Similarity=0.473 Sum_probs=85.8
Q ss_pred cEEEEEeccCCCCCCCccHHHHHHHHhcCCC----CCCCCCCceEEEEeecCcCc-hHHHHHHHHHHHHHHhCCCeEeec
Q 008647 4 SIYLRLTCRYGDGEPTDNAARFYKWFTEGND----RGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVP 78 (558)
Q Consensus 4 ~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~----~~~~l~~~~~avfGlGds~y-~~f~~~~~~l~~~l~~lGa~~i~~ 78 (558)
+.++|+++|+-+|+|| +.-|.+||..... .+.+|.+++||||||||+.| ++||+.|+++|.++..|||.|++|
T Consensus 93 n~~~~lv~~~~~~~~~--~d~~~~~L~Esa~DFRv~~~~L~~~~yaVfGlG~~~~~~~f~~~ak~~d~wi~~LG~~r~~p 170 (601)
T KOG1160|consen 93 NALYFLVLPSYDIDPP--LDYFLQWLEESANDFRVGSFPLRGLVYAVFGLGDSEYWPKFCYQAKRADKWISRLGGRRIFP 170 (601)
T ss_pred ceEEEEEecccCCCCc--HHHHHHHHHhhhhccccCCccccCceEEEEeccchhhhhHHHHHHHhHHHHHHhhcCceeee
Confidence 4789999999999999 8889999976433 36789999999999999999 999999999999999999999999
Q ss_pred CcccCCCCCchhHHHHHHHHHHHHHHH
Q 008647 79 LGLGDDDQCIEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 79 ~~~~d~~~~~~~~~~~W~~~l~~~l~~ 105 (558)
+|++|.++ ..+++|...+...|+.
T Consensus 171 ~G~~~~~~---~~id~W~~~~~~~Lk~ 194 (601)
T KOG1160|consen 171 LGEVDMDS---AKIDEWTSLVAETLKD 194 (601)
T ss_pred cCcccccc---ccHHHHHHHHHHHHcC
Confidence 99999884 4455999988888765
No 91
>PRK06703 flavodoxin; Provisional
Probab=99.48 E-value=2.2e-13 Score=125.15 Aligned_cols=99 Identities=17% Similarity=0.170 Sum_probs=85.9
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.++.|||++||||.|++|+++..|+++|.... +++++|+|||+||+.|++||.+++.++++|+++|++.+.+...
T Consensus 48 ~~d~viigspt~~~g~~p~~~~~f~~~l~~~~-----l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~ 122 (151)
T PRK06703 48 AYDGIILGSYTWGDGDLPYEAEDFHEDLENID-----LSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEGLK 122 (151)
T ss_pred cCCcEEEEECCCCCCcCcHHHHHHHHHHhcCC-----CCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEcccCeE
Confidence 47899999999999999999999999997654 7789999999999999999999999999999999999988888
Q ss_pred cCCCCC---chhHHHHHHHHHHHHHHH
Q 008647 82 GDDDQC---IEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 82 ~d~~~~---~~~~~~~W~~~l~~~l~~ 105 (558)
.+...+ .......|.+++.+.+.+
T Consensus 123 ~~~~p~~~~~~~~~~~~~~~~~~~~~~ 149 (151)
T PRK06703 123 IELAPETDEDVEKCSNFAIAFAEKFAQ 149 (151)
T ss_pred EecCCCchhHHHHHHHHHHHHHHHHHh
Confidence 776653 345677888887766554
No 92
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=99.30 E-value=1.5e-11 Score=114.85 Aligned_cols=73 Identities=21% Similarity=0.248 Sum_probs=65.9
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCc-Cc-hHHHHHHHHHHHHHHhCCCeEeecC
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNR-QY-EHFNKIGIVLDEELCKQGGARLVPL 79 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds-~y-~~f~~~~~~l~~~l~~lGa~~i~~~ 79 (558)
+|+.+||++||||.|++|+++..|++.|.... +++++++|||+||+ .| ++||.+++.++++|+++||+.+...
T Consensus 44 ~~d~ii~gspty~~g~~p~~~~~fl~~l~~~~-----l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~~ 118 (167)
T TIGR01752 44 AYDKLILGTPTWGVGELQEDWEDFLPTLEELD-----FTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFW 118 (167)
T ss_pred hCCEEEEEecCCCCCcCcHHHHHHHHHhhcCC-----CCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEcee
Confidence 58899999999999999999999999986644 78999999999998 58 7999999999999999999988543
No 93
>PRK09271 flavodoxin; Provisional
Probab=99.26 E-value=2.6e-11 Score=112.54 Aligned_cols=92 Identities=17% Similarity=0.140 Sum_probs=76.0
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCc--hHHHHHHHHHHHHHHhCCCeEeecC
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPL 79 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y--~~f~~~~~~l~~~l~~lGa~~i~~~ 79 (558)
.++.+||+++|||.|.+|+++..|+++|.... .++++++|||+||+.| ++||.+++.++++|... .+.
T Consensus 51 ~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~-----~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~-----~~~ 120 (160)
T PRK09271 51 DYDLYLLGTWTDNAGRTPPEMKRFIAELAETI-----GKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSS-----YPR 120 (160)
T ss_pred cCCEEEEECcccCCCcCCHHHHHHHHHHHHHh-----ccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhcc-----CCc
Confidence 46899999999999999999999999997743 3567899999999999 89999999999999764 244
Q ss_pred cccCCCCC---chhHHHHHHHHHHHHH
Q 008647 80 GLGDDDQC---IEDDFTAWRELVWPEL 103 (558)
Q Consensus 80 ~~~d~~~~---~~~~~~~W~~~l~~~l 103 (558)
.+.+...+ ....+.+|..++++++
T Consensus 121 l~~~~~p~~~~d~~~~~~~~~~~~~~~ 147 (160)
T PRK09271 121 LKIEQMPHGERDAAAIDNWTDKVLALC 147 (160)
T ss_pred eeeecCCccchhHHHHHHHHHHHHHHh
Confidence 55554332 2478899999888776
No 94
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=99.24 E-value=3.9e-11 Score=108.40 Aligned_cols=91 Identities=21% Similarity=0.211 Sum_probs=77.0
Q ss_pred CCcEEEEEeccCCCCCCC-ccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCc
Q 008647 2 LHSIYLRLTCRYGDGEPT-DNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 80 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p-~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~ 80 (558)
.++.+||+++||+.|.+| ++++.|+++|.... +++++++|||+|++.|+ ||.+++.++++|+++|++++.+..
T Consensus 45 ~~d~iilgspty~~g~~p~~~~~~f~~~l~~~~-----~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~~g~~~v~~~~ 118 (140)
T TIGR01753 45 SYDAVLLGCSTWGDEDLEQDDFEPFFEELEDID-----LGGKKVALFGSGDWGYE-FCEAVDDWEERLKEAGATIIAEGL 118 (140)
T ss_pred cCCEEEEEcCCCCCCCCCcchHHHHHHHhhhCC-----CCCCEEEEEecCCCCch-hhHHHHHHHHHHHHCCCEEecCCe
Confidence 478999999999999999 99999999997653 78999999999999998 999999999999999999999876
Q ss_pred ccCCCC--CchhHHHHHHHH
Q 008647 81 LGDDDQ--CIEDDFTAWREL 98 (558)
Q Consensus 81 ~~d~~~--~~~~~~~~W~~~ 98 (558)
..+... +.....++|.++
T Consensus 119 ~~~~~p~~~~~~~~~~~~~~ 138 (140)
T TIGR01753 119 KVDGDPEEEDLDKCREFAKD 138 (140)
T ss_pred eeecCCCHHHHHHHHHHHHH
Confidence 665544 234445566544
No 95
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=99.24 E-value=4.5e-11 Score=109.80 Aligned_cols=96 Identities=22% Similarity=0.264 Sum_probs=83.6
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchH-HHHHHHHHHHHHHhCC--CeEeec
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEH-FNKIGIVLDEELCKQG--GARLVP 78 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~-f~~~~~~l~~~l~~lG--a~~i~~ 78 (558)
.|+.++++++|||.|+.|+++.+|+..+.... +++++||+||+||+.|.. ||.++..+...|+..| +....+
T Consensus 48 ~~d~~~~g~~t~~~ge~~~~~~~f~~~~~~~~-----~~~k~~a~~g~gd~~~~~~fc~~~~~~~~~~~~~g~~~~~~~~ 122 (151)
T COG0716 48 SYDELLLGTPTWGAGELPDDWYDFIEELEPID-----FKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKAVGILE 122 (151)
T ss_pred cCCEEEEEeCCCCCCcCCccHHHHHHHhcccC-----cCCceEEEEeccccccchHHHHHHHHHHHHHHHcCcccccccc
Confidence 57899999999999999999999999998844 889999999999999987 9999999999999999 666777
Q ss_pred Cccc--CCCC--CchhHHHHHHHHHHHH
Q 008647 79 LGLG--DDDQ--CIEDDFTAWRELVWPE 102 (558)
Q Consensus 79 ~~~~--d~~~--~~~~~~~~W~~~l~~~ 102 (558)
.... |... ..+...+.|.++++..
T Consensus 123 ~~~~~~~~~~~e~~~~~~~~w~~~~~~~ 150 (151)
T COG0716 123 TLGYIFDASPNEEDEKRIKEWVKQILNE 150 (151)
T ss_pred ccceeccCCCCCccHHHHHHHHHHHHhh
Confidence 6666 3333 5789999999887653
No 96
>PRK06756 flavodoxin; Provisional
Probab=99.22 E-value=8e-11 Score=107.77 Aligned_cols=94 Identities=19% Similarity=0.202 Sum_probs=79.4
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.|+.|||+++|||.|.+|+++..|++.|.... ++++++++||.|++.|..||.+.+.+.++|.++|++.+.+...
T Consensus 49 ~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~-----l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~ 123 (148)
T PRK06756 49 QYDGIILGAYTWGDGDLPDDFLDFYDAMDSID-----LTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLK 123 (148)
T ss_pred cCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCC-----CCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeE
Confidence 57899999999999999999999999987654 7899999999999999999999999999999999999988777
Q ss_pred cCCCCCchhHHH---HHHHHHHH
Q 008647 82 GDDDQCIEDDFT---AWRELVWP 101 (558)
Q Consensus 82 ~d~~~~~~~~~~---~W~~~l~~ 101 (558)
..... .+++++ .|.+.+.+
T Consensus 124 ~~~~p-~~~d~~~~~~~~~~~~~ 145 (148)
T PRK06756 124 VELTP-EDEDVEKCLQFGAEFVK 145 (148)
T ss_pred EecCC-CHHHHHHHHHHHHHHHH
Confidence 76554 355554 45444433
No 97
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=99.21 E-value=5e-11 Score=108.11 Aligned_cols=85 Identities=15% Similarity=0.139 Sum_probs=69.2
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCc--hHHHHHHHHHHHHHHhCCCeEeecC
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPL 79 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y--~~f~~~~~~l~~~l~~lGa~~i~~~ 79 (558)
+|+.+||++||||.|.+|+++..|+++|.. ++++|+|||+||+.| ++||.++++++++|++++ +.
T Consensus 50 ~~d~iilgs~t~~~g~~p~~~~~fl~~l~~--------~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~~~~-----~~ 116 (140)
T TIGR01754 50 NYDLVFLGTWTWERGRTPDEMKDFIAELGY--------KPSNVAIFGTGETQWGDDLYCGAVDRLAHFFGSSH-----PV 116 (140)
T ss_pred hCCEEEEEcCeeCCCcCCHHHHHHHHHhcc--------cCCEEEEEEcCCCCcCcchHhHHHHHHHHHHcCcC-----Cc
Confidence 478899999999999999999999999854 458999999999999 799999999999997762 33
Q ss_pred cccCCCC---CchhHHHHHHHHH
Q 008647 80 GLGDDDQ---CIEDDFTAWRELV 99 (558)
Q Consensus 80 ~~~d~~~---~~~~~~~~W~~~l 99 (558)
.+.+... +....+.+|.+++
T Consensus 117 ~~i~~~~~~~~d~~~~~~~~~~~ 139 (140)
T TIGR01754 117 LKIEQMPHGEQDGRAIYDWLEGV 139 (140)
T ss_pred eeEecCCcccccHHHHHHHHHHh
Confidence 4444433 2456778898764
No 98
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=99.09 E-value=2.4e-10 Score=100.49 Aligned_cols=58 Identities=24% Similarity=0.265 Sum_probs=51.5
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCc-hHHHHHHHHHHHHHHh
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCK 70 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~l~~~l~~ 70 (558)
.++.+++ |+|||+|+.|+.+.+|++.+.. +.+||||.||+.| ++||.+++++.+++..
T Consensus 35 ~~~~vli-TyT~G~G~vP~~~~~Fle~~~n----------~~~gV~gSGn~n~g~~fc~A~d~ia~~~~~ 93 (125)
T TIGR00333 35 DQEFVLI-TYTGGFGAVPKQTISFLNKKHN----------LLRGVAASGNKVWGDNFALAGDVISRKLNV 93 (125)
T ss_pred CCCEEEE-ecCCCCCcCCHHHHHHHHhhhh----------cEEEEEEcCCCchHHHHHHHHHHHHHHhCC
Confidence 3566655 9999999999999999988754 5799999999999 9999999999999876
No 99
>PRK09267 flavodoxin FldA; Validated
Probab=99.01 E-value=2.9e-09 Score=99.73 Aligned_cols=96 Identities=22% Similarity=0.307 Sum_probs=77.0
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCc-Cc-hHHHHHHHHHHHHHHhCCCeEeecC
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNR-QY-EHFNKIGIVLDEELCKQGGARLVPL 79 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds-~y-~~f~~~~~~l~~~l~~lGa~~i~~~ 79 (558)
+|+.+||++|||+.|.+|+++..|++.+.... |++++++|||+||+ .| ++||.+.+.+++.|.+.|++.+...
T Consensus 46 ~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~-----l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~~g~~~vg~~ 120 (169)
T PRK09267 46 AYDLLILGIPTWGYGELQCDWDDFLPELEEID-----FSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHW 120 (169)
T ss_pred hCCEEEEEecCcCCCCCCHHHHHHHHHHhcCC-----CCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCEEECcc
Confidence 58899999999999999999999998875543 88999999999998 58 8999999999999999998766331
Q ss_pred ---cccC-----------------CC--C-CchhHHHHHHHHHHHH
Q 008647 80 ---GLGD-----------------DD--Q-CIEDDFTAWRELVWPE 102 (558)
Q Consensus 80 ---~~~d-----------------~~--~-~~~~~~~~W~~~l~~~ 102 (558)
++.. .+ + -.+..+++|.++|.+.
T Consensus 121 ~~~gy~~~~~~~~~~~~~~g~~~d~~~~~~~td~~i~~w~~~i~~~ 166 (169)
T PRK09267 121 PTDGYTFEASKAVDDGKFVGLALDEDNQSELTDERIEAWVKQIKPE 166 (169)
T ss_pred CCCCccccccceeeCCEEEEEEecCCCchhhhHHHHHHHHHHHHHH
Confidence 2211 11 1 1367888999887764
No 100
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=98.87 E-value=4.5e-09 Score=96.78 Aligned_cols=74 Identities=20% Similarity=0.293 Sum_probs=49.2
Q ss_pred CEEEEccCccccchHHHHHHHHHHhh-cCCCCCCeEEEEeccCCCCccccHHHHHHHHHcC--CccEEEEEEecCCC
Q 008647 409 PIIMVGPGTGLAPFRGFLQERMALKQ-DGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG--VISELILAFSREGS 482 (558)
Q Consensus 409 plilIa~GtGIAP~~s~l~~~~~~~~-~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~--~~~~~~~a~Sr~~~ 482 (558)
.++|||||+||||++++++++..... ......++.|+|.+|+.+.=..|.++|+++.... ..+++.+.++++..
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~~ 79 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRESS 79 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT---
T ss_pred EEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCCcc
Confidence 58999999999999999999887554 1234688999999999883336776665544332 34567777776543
No 101
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.78 E-value=3.1e-08 Score=111.00 Aligned_cols=196 Identities=18% Similarity=0.244 Sum_probs=120.4
Q ss_pred CChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cC-CCC-CCC----Ccc
Q 008647 320 PPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AI-PLE-GNG----DCS 389 (558)
Q Consensus 320 ~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~-~G~-~~~----~~~ 389 (558)
..+|||+-+-.|. ++-+||||+|+| .++.+.+.||.. |..|..|.+ +. +.. .+. ...
T Consensus 382 y~~Gqyifv~~p~ls~~qwHPFTItSsp--~dd~lsvhIk~~-----------g~wT~~L~~~~~~~~~~~~~~~~~~~~ 448 (646)
T KOG0039|consen 382 YKPGQYIFVNCPSLSKLEWHPFTITSAP--EDDFLSVHIKAL-----------GDWTEKLRNAFSEVSQPPESDKSYPFP 448 (646)
T ss_pred CCCCCEEEEECccccccccCCceeecCC--CCCEEEEEEEec-----------CcHHHHHHHHHhhhcccccccccccCc
Confidence 3578887775565 478999999999 378999999853 888888877 33 111 011 125
Q ss_pred EEEEEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCC------------CCCCeEEEEeccCCCCcccc
Q 008647 390 WAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGA------------QLGPALLFFGCRNRRMDFIY 457 (558)
Q Consensus 390 ~v~v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~------------~~~~i~L~~G~R~~~~d~~y 457 (558)
++.|.||+|.=..+-..-..++|||+|+|+|||.|++++.....+.+. ..+++..+|-||....=..+
T Consensus 449 ~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~sf~wf 528 (646)
T KOG0039|consen 449 KILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQRSFEWF 528 (646)
T ss_pred eEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecceeEEEEeccccchHHH
Confidence 799999999432222233467999999999999999999987443221 23567888888877723345
Q ss_pred HHHHHHHHHc---CCccEEEEEEecC----CCC----------------ccchh------hhhHhcHHHHHHhhh---CC
Q 008647 458 EDELNNFEEE---GVISELILAFSRE----GSQ----------------KEYVQ------HKMMDKAAQLWSLLS---KE 505 (558)
Q Consensus 458 ~~el~~~~~~---~~~~~~~~a~Sr~----~~~----------------k~yvq------~~l~~~~~~l~~~~~---~~ 505 (558)
.+.+.+.... +.. .++...+.. +.. +..++ +.-+-+.+.+.+-+. ++
T Consensus 529 ~~~l~~v~~~~~~~~~-e~~~~~t~~~~~~d~~~~~~~~~~~~~~~~~~~di~~g~~~~~~~gRPn~~~~~~~~~~~~~~ 607 (646)
T KOG0039|consen 529 KGLLTEVEEYDSSGVI-ELHNYVTSSYEEGDARSALIQMVQKLLHAKNGVDIVTGLKVETHFGRPNWKEVFKEIAKSHPN 607 (646)
T ss_pred HHHHHHHHHHHhcCCc-hhheehhHhHhhhhhhhHHHHHHHhhcccccCccccccceeeeeCCCCCHHHHHHHHHhhCCC
Confidence 5555554422 211 233333211 000 01111 001122333333222 12
Q ss_pred --CEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 506 --GYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 506 --~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
.-|+.||| +.|.+.+++...+...
T Consensus 608 ~~vgVf~CGp-~~l~~~~~~~~~~~~~ 633 (646)
T KOG0039|consen 608 VRVGVFSCGP-PGLVKELRKLCNDFSS 633 (646)
T ss_pred ceEEEEEeCC-HHHHHHHHHHHHhccc
Confidence 48999999 8999999998887653
No 102
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.73 E-value=3.2e-08 Score=112.88 Aligned_cols=95 Identities=17% Similarity=0.137 Sum_probs=75.5
Q ss_pred CHHHHHHhCCCC--CCChhHHHHhhCCC-----C-CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh
Q 008647 307 SLLEVMAEFPSA--TPPIGVFFAAVAPH-----L-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN 378 (558)
Q Consensus 307 ~~~d~l~~f~~~--~~~~~~~l~~~~p~-----~-~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~ 378 (558)
+++.+-.+.|.+ ..-+|||+++..+. + .||++||++.+.. .+.++|+|+++ |.+|..|++
T Consensus 804 ~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e-~g~It~i~rvV-----------GkgT~~Ls~ 871 (1028)
T PRK06567 804 KTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVE-KGLISFIVFEV-----------GKSTSLCKT 871 (1028)
T ss_pred CEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCCC-CCEEEEEEEEE-----------ChHHHHHhc
Confidence 344444445542 35699999997431 2 5679999998754 57899999976 999999999
Q ss_pred cCCCCCCCCccEEEEEeeCC-CCcCCCCCCCCEEEEccCccccc
Q 008647 379 AIPLEGNGDCSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAP 421 (558)
Q Consensus 379 l~~G~~~~~~~~v~v~~p~g-~F~lp~~~~~plilIa~GtGIAP 421 (558)
+++| +.+.+.||.| .|.++. .+.+++||||+|+||
T Consensus 872 l~~G------d~v~v~GPLG~pF~i~~--~k~vLLVgGGVGiAp 907 (1028)
T PRK06567 872 LSEN------EKVVLMGPTGSPLEIPQ--NKKIVIVDFEVGNIG 907 (1028)
T ss_pred CCCC------CEEEEEcccCCCCCCCC--CCeEEEEEccccHHH
Confidence 9999 8999999999 788764 358999999999998
No 103
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=98.64 E-value=7.3e-08 Score=86.18 Aligned_cols=85 Identities=22% Similarity=0.255 Sum_probs=62.5
Q ss_pred CcEEEEEeccCCC----CCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCc-hHHHHHHHHHHHHHHhCCCeEee
Q 008647 3 HSIYLRLTCRYGD----GEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLV 77 (558)
Q Consensus 3 ~~~~i~~~sT~G~----G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~l~~~l~~lGa~~i~ 77 (558)
...++++++|||+ |+.|+...+|++.+... ...++|||.||+.| ++||.+++.+.+++. ...+
T Consensus 39 ~~~~~lv~PTy~~g~~~G~vP~~v~~Fl~~~~n~--------~~~~gV~gsGnr~~g~~f~~a~~~i~~~~~---vp~l- 106 (134)
T PRK03600 39 DEPYILITPTYGGGGTAGAVPKQVIRFLNDEHNR--------KLLRGVIASGNRNFGDAFALAGDVISAKCQ---VPLL- 106 (134)
T ss_pred CCCEEEEEeccCCCCcCCcccHHHHHHHhccccC--------CcEEEEEEecCchHHHHHHHHHHHHHHHhC---CCeE-
Confidence 4578999999999 69999999997774332 34899999999999 999999999999976 2122
Q ss_pred cCcccCCCC--CchhHHHHHHHHHHH
Q 008647 78 PLGLGDDDQ--CIEDDFTAWRELVWP 101 (558)
Q Consensus 78 ~~~~~d~~~--~~~~~~~~W~~~l~~ 101 (558)
.+.+-+. ...+.+.+|++++|.
T Consensus 107 --~k~El~gt~~Dv~~~~~~~~~~~~ 130 (134)
T PRK03600 107 --YRFELSGTNEDVENVRKGVEEFWQ 130 (134)
T ss_pred --EEEecCCCHHHHHHHHHHHHHHHh
Confidence 2222222 234556778777755
No 104
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=98.48 E-value=4.4e-08 Score=83.05 Aligned_cols=68 Identities=22% Similarity=0.163 Sum_probs=56.0
Q ss_pred CCCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEE
Q 008647 318 ATPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF 394 (558)
Q Consensus 318 ~~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~ 394 (558)
..+.+|||+.+.++. ...|+|||+|.|.. .+.++|+|+.. ..|.+|+||+++++| +.|.+.
T Consensus 28 ~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~-~~~~~~~ik~~---------~~G~~S~~L~~l~~G------d~v~i~ 91 (99)
T PF00970_consen 28 LDFKPGQFVSVRVPINGKQVSRPYSPASSPDD-KGYLEFAIKRY---------PNGRVSRYLHQLKPG------DEVEIR 91 (99)
T ss_dssp -SSTTT-EEEEEEEETTEEEEEEEEBCSSTTS-SSEEEEEEEEC---------TTSHHHHHHHTSCTT------SEEEEE
T ss_pred cccCcceEEEEEEccCCcceecceeEeeecCC-CCcEEEEEEec---------cCCHHHHHHHhCCCC------CEEEEE
Confidence 346789999998662 24699999999965 67999999964 259999999999999 899999
Q ss_pred eeCCCCc
Q 008647 395 IRPSNFK 401 (558)
Q Consensus 395 ~p~g~F~ 401 (558)
+|.|.|.
T Consensus 92 gP~G~f~ 98 (99)
T PF00970_consen 92 GPYGNFT 98 (99)
T ss_dssp EEESSEE
T ss_pred EcccccC
Confidence 9999885
No 105
>PRK02551 flavoprotein NrdI; Provisional
Probab=98.31 E-value=1.5e-06 Score=79.16 Aligned_cols=60 Identities=15% Similarity=0.315 Sum_probs=46.1
Q ss_pred cEEEEEeccC-CCCCCCccHHH------HHHHHhcCCCCCCCCCCceEEEEeecCcCc-hHHHHHHHHHHHHH
Q 008647 4 SIYLRLTCRY-GDGEPTDNAAR------FYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEEL 68 (558)
Q Consensus 4 ~~~i~~~sT~-G~G~~p~n~~~------f~~~l~~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~l~~~l 68 (558)
..+|+|++|| |.|.+|+++.. ..++|.... ..+..+||||+||++| +.||.+|+++++.+
T Consensus 55 ~p~vli~pTY~~gG~~~~~~~~~~vp~~v~dFL~~~~-----N~~~~~gVigsGNrNfg~~F~~aa~~ia~~~ 122 (154)
T PRK02551 55 EPFVAFLPTYLEGGNGIDNGDVEILTTPLGDFIAYHD-----NAKRCLGIIGSGNRNFNNQYCLTAKQYAKRF 122 (154)
T ss_pred CCEEEEEeeecCCCCCcccCccccchHHHHHHHcchh-----hhhheEEEEeecccHHHHHHHHHHHHHHHHc
Confidence 4678999999 88888876543 333443322 2567899999999999 99999999999764
No 106
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=98.07 E-value=9.5e-06 Score=86.43 Aligned_cols=91 Identities=14% Similarity=-0.003 Sum_probs=73.8
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.++.+||.++||+.|.+| .+..|+++|.... ++++.+|+||. |..||.+.+.+.++|+++|++.+.+...
T Consensus 300 ~~d~ii~GspT~~~~~~~-~~~~~l~~l~~~~-----~~~K~~a~FGs----ygw~g~a~~~~~~~l~~~g~~~v~~~~~ 369 (394)
T PRK11921 300 KSKAILVGSSTINRGILS-STAAILEEIKGLG-----FKNKKAAAFGS----YGWSGESVKIITERLKKAGFEIVNDGIR 369 (394)
T ss_pred hCCEEEEECCCcCccccH-HHHHHHHHhhccC-----cCCCEEEEEec----CCCccHHHHHHHHHHHHCCCEEccCcEE
Confidence 478999999999999886 4999999998765 78999999997 7668999999999999999999887766
Q ss_pred cCCCC--CchhHHHHHHHHHHHH
Q 008647 82 GDDDQ--CIEDDFTAWRELVWPE 102 (558)
Q Consensus 82 ~d~~~--~~~~~~~~W~~~l~~~ 102 (558)
..... +....+++|.+++.+.
T Consensus 370 ~~~~p~~~~~~~~~~~g~~la~~ 392 (394)
T PRK11921 370 ELWNPDDEALDRCRSFGENFAES 392 (394)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHh
Confidence 65554 2345557777666543
No 107
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=97.67 E-value=0.00012 Score=79.66 Aligned_cols=92 Identities=9% Similarity=-0.153 Sum_probs=72.5
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.++.+||.++||+.|.+| .+..|++.|.... ++++++++||. |.-+|.+++.+.++|+++|++.+ +..+
T Consensus 304 ~ad~vilGspT~~~~~~p-~~~~fl~~l~~~~-----l~gK~~~vFGS----ygw~g~a~~~~~~~l~~~g~~~~-~~l~ 372 (479)
T PRK05452 304 RSKGVLVGSSTMNNVMMP-KIAGLLEEITGLR-----FRNKRASAFGS----HGWSGGAVDRLSTRLQDAGFEMS-LSLK 372 (479)
T ss_pred hCCEEEEECCccCCcchH-HHHHHHHHhhccC-----cCCCEEEEEEC----CCcCcHHHHHHHHHHHHCCCEEe-ccEE
Confidence 478999999999988877 6999999987765 78999999996 45589999999999999999875 5555
Q ss_pred cCCCC--CchhHHHHHHHHHHHHHH
Q 008647 82 GDDDQ--CIEDDFTAWRELVWPELD 104 (558)
Q Consensus 82 ~d~~~--~~~~~~~~W~~~l~~~l~ 104 (558)
+.... +..+....+.++|.+++.
T Consensus 373 ~~~~P~ee~~~~~~~~g~~la~~~~ 397 (479)
T PRK05452 373 AKWRPDQDALELCREHGREIARQWA 397 (479)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHh
Confidence 55544 234555667677766554
No 108
>PRK05569 flavodoxin; Provisional
Probab=97.39 E-value=0.00073 Score=60.99 Aligned_cols=69 Identities=10% Similarity=-0.008 Sum_probs=55.6
Q ss_pred CCcEEEEEeccCCCCCCC-ccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeec
Q 008647 2 LHSIYLRLTCRYGDGEPT-DNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 78 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p-~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~ 78 (558)
.++.+||.++||+.|.+| ..+..|++.|.... ++++++++||.+...+ +.+.+.+.+.|.+.|++.+.+
T Consensus 48 ~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~~-----~~~K~v~~f~t~g~~~---~~~~~~~~~~l~~~g~~~~~~ 117 (141)
T PRK05569 48 EADAVAFGSPSMDNNNIEQEEMAPFLDQFKLTP-----NENKKCILFGSYGWDN---GEFMKLWKDRMKDYGFNVIGD 117 (141)
T ss_pred hCCEEEEECCCcCCCcCChHHHHHHHHHhhccC-----cCCCEEEEEeCCCCCC---CcHHHHHHHHHHHCCCeEeee
Confidence 578999999999888764 79999999986644 6899999999875443 345677888999999977654
No 109
>PRK05568 flavodoxin; Provisional
Probab=97.39 E-value=0.00079 Score=60.83 Aligned_cols=88 Identities=13% Similarity=-0.008 Sum_probs=60.6
Q ss_pred CCcEEEEEeccCCCCCCC-ccHHHHHHHHhcCCCCCCCCCCceEEEEee-cCcCchHHHHHHHHHHHHHHhCCCeEeecC
Q 008647 2 LHSIYLRLTCRYGDGEPT-DNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARLVPL 79 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p-~n~~~f~~~l~~~~~~~~~l~~~~~avfGl-Gds~y~~f~~~~~~l~~~l~~lGa~~i~~~ 79 (558)
.++.+||.++||+.|.+| ..+..|++.+... ++++++++||. |++. ..+.+.+.+.|+++|++.+.+.
T Consensus 48 ~~d~iilgsp~y~~~~~~~~~~~~f~~~~~~~------~~~k~~~~f~t~G~~~----~~~~~~~~~~l~~~g~~~~~~~ 117 (142)
T PRK05568 48 GADVVALGSPAMGDEVLEEGEMEPFVESISSL------VKGKKLVLFGSYGWGD----GEWMRDWVERMEGYGANLVNEG 117 (142)
T ss_pred hCCEEEEECCccCcccccchhHHHHHHHhhhh------hCCCEEEEEEccCCCC----ChHHHHHHHHHHHCCCEEeCCc
Confidence 578999999999999874 7899999887542 57899999998 3221 2346788888999999877663
Q ss_pred cccCCCC--CchhHHHHHHHHH
Q 008647 80 GLGDDDQ--CIEDDFTAWRELV 99 (558)
Q Consensus 80 ~~~d~~~--~~~~~~~~W~~~l 99 (558)
....... +..+...+|..+|
T Consensus 118 ~~~~~~p~~~~l~~~~~~g~~l 139 (142)
T PRK05568 118 LIVNNTPEGEGIEKCKALGEAL 139 (142)
T ss_pred EEEecCCCHHHHHHHHHHHHHH
Confidence 3332222 2334444554443
No 110
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=97.29 E-value=0.00031 Score=61.53 Aligned_cols=57 Identities=28% Similarity=0.428 Sum_probs=43.9
Q ss_pred cEEEEEeccCCCCC----CCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCc-hHHHHHHHHHHHHH
Q 008647 4 SIYLRLTCRYGDGE----PTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEEL 68 (558)
Q Consensus 4 ~~~i~~~sT~G~G~----~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~l~~~l 68 (558)
...|++++|||.|+ .|....+|.+.-.... .=.+|+|.||+.| +.||.+|+++.+..
T Consensus 39 ep~vLitpTy~~G~~~~~vp~~v~~FL~~~~N~~--------~l~GVigSGNrNfg~~f~~aa~~ia~ky 100 (122)
T PF07972_consen 39 EPFVLITPTYGFGENDGGVPKQVIRFLENPDNRK--------LLRGVIGSGNRNFGDNFCLAADKIAEKY 100 (122)
T ss_dssp S-EEEEEE-BTTTBSSTSS-HHHHHHHHSHHHGG--------GEEEEEEEE-GGGGGGTTHHHHHHHHHH
T ss_pred CCEEEEecccCCCCCCCCCCHHHHHHHHHHHHHh--------hheeEEecCCcHHHHHHHHHHHHHHHHc
Confidence 35789999999999 9999999877544432 3468999999999 89999999998775
No 111
>PRK06242 flavodoxin; Provisional
Probab=97.09 E-value=0.002 Score=58.68 Aligned_cols=66 Identities=11% Similarity=0.036 Sum_probs=54.3
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeec
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 78 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~ 78 (558)
.++.|||.++|| .|.+|..++.|.+.+.. +.++++++||.+......+ .+.+.+.|..+|++.+..
T Consensus 43 ~~d~ii~g~pvy-~~~~~~~~~~fl~~~~~-------~~~k~~~~f~t~g~~~~~~---~~~l~~~l~~~g~~~~~~ 108 (150)
T PRK06242 43 EYDLIGFGSGIY-FGKFHKSLLKLIEKLPP-------VSGKKAFIFSTSGLPFLKY---HKALKKKLKEKGFEIVGE 108 (150)
T ss_pred HCCEEEEeCchh-cCCcCHHHHHHHHhhhh-------hcCCeEEEEECCCCCcchH---HHHHHHHHHHCCCEEEEE
Confidence 578999999999 58899999999887743 4689999999988765433 788999999999988755
No 112
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=97.00 E-value=0.0028 Score=55.74 Aligned_cols=86 Identities=23% Similarity=0.332 Sum_probs=59.5
Q ss_pred EEEEEeccCCCC----CCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCc-hHHHHHHHHHHHHHHhCCCeEeecC
Q 008647 5 IYLRLTCRYGDG----EPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPL 79 (558)
Q Consensus 5 ~~i~~~sT~G~G----~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~l~~~l~~lGa~~i~~~ 79 (558)
..|+|++|||.| +.|....+| |.... -...--+|.|.|++.| ..||.+|+.+.+++ |---++..
T Consensus 42 pyvlitpTyg~G~~~~~Vp~~vi~F---Ln~~~-----Nr~~~rGViaSGN~NfG~~f~~Ag~~iS~k~---~vPlLy~F 110 (141)
T COG1780 42 PYVLITPTYGGGGTVGAVPKQVIRF---LNNEH-----NRALCRGVIASGNRNFGDNFALAGDVISAKC---GVPLLYRF 110 (141)
T ss_pred CeEEEeccccCCCccCccCHHHHHH---hcccc-----chhheEEEEecCCccHHHHHHHHHHHHHHHh---CCCEEEEE
Confidence 578999999999 889888877 43322 2345578999999999 99999999998764 44333322
Q ss_pred cccCCCCCchhHHHHHHHHHHHH
Q 008647 80 GLGDDDQCIEDDFTAWRELVWPE 102 (558)
Q Consensus 80 ~~~d~~~~~~~~~~~W~~~l~~~ 102 (558)
-+. ...+.-..+.+|+.++|+.
T Consensus 111 EL~-GT~~Dv~~v~~~v~~~~~~ 132 (141)
T COG1780 111 ELL-GTAEDVAAVRKGVTEFWKR 132 (141)
T ss_pred ecc-CCHHHHHHHHHHHHHHHHh
Confidence 111 1112346677888887774
No 113
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=96.88 E-value=0.011 Score=58.55 Aligned_cols=171 Identities=20% Similarity=0.259 Sum_probs=103.1
Q ss_pred CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCCCCcCCCCCCCCEEE
Q 008647 333 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIM 412 (558)
Q Consensus 333 ~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F~lp~~~~~plil 412 (558)
...|.|||.+.... .+++.|-+-+.. ..|.+|.|-.+.++| |+|.+.+|.|.+..++ ....++|
T Consensus 85 ~~~R~YTiR~~d~~-~~e~~vDfVlH~--------~~gpas~WA~~a~~G------D~l~i~GP~g~~~p~~-~~~~~lL 148 (265)
T COG2375 85 PPQRTYTIRAVDAA-AGELDVDFVLHG--------EGGPASRWARTAQPG------DTLTIMGPRGSLVPPE-AADWYLL 148 (265)
T ss_pred CCcccceeeeeccc-ccEEEEEEEEcC--------CCCcchhhHhhCCCC------CEEEEeCCCCCCCCCC-CcceEEE
Confidence 46899999876432 355555443321 269999999999999 9999999999877654 3568999
Q ss_pred EccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCCCccchhhhhH
Q 008647 413 VGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMM 492 (558)
Q Consensus 413 Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~~k~yvq~~l~ 492 (558)
||==|++--+.++|++.- ...+...|.-..+.+ |. .++ .. .....+.... |.+.. +. .++.
T Consensus 149 igDetAlPAIa~iLE~lp-------~~~~~~a~lev~d~a-d~---~~l---~~-~~~l~~~Wl~-r~~~~--~~-~ll~ 209 (265)
T COG2375 149 IGDETALPAIARILETLP-------ADTPAEAFLEVDDAA-DR---DEL---PS-PDDLELEWLA-RDDAP--TE-QLLA 209 (265)
T ss_pred eccccchHHHHHHHHhCC-------CCCceEEEEEeCChH-Hh---hcc---CC-CCceeEEEec-CCCcc--ch-HHHH
Confidence 999999988888887753 233446666666665 44 222 11 2222344433 33211 11 1221
Q ss_pred hcHHHHHHh-hhC-CCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHH--HHHHHHH
Q 008647 493 DKAAQLWSL-LSK-EGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSK--AESIVKK 546 (558)
Q Consensus 493 ~~~~~l~~~-~~~-~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~--a~~~~~~ 546 (558)
.. +.+. +.. +.++||.|= ..+++.+++.| .++.|++... +..|++.
T Consensus 210 ~a---~~~~~~P~~~~~vwiagE-~~~v~~~Rk~L----~~e~g~dk~~i~a~gYW~~ 259 (265)
T COG2375 210 AA---LAQAALPAGDYYVWIAGE-ASAVKAIRKFL----RNERGFDKSRVRAIGYWRR 259 (265)
T ss_pred HH---HhcccCCCCceEEEEecc-HHHHHHHHHHH----hhhcCCCHHHhhhhhhhhc
Confidence 11 1111 122 369999998 66666555555 4555666543 3345543
No 114
>PRK07116 flavodoxin; Provisional
Probab=95.20 E-value=0.069 Score=49.36 Aligned_cols=82 Identities=7% Similarity=0.018 Sum_probs=53.4
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEee-cCcCchHHHHHHHHHHHHHHhCCCeEeecCc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARLVPLG 80 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGl-Gds~y~~f~~~~~~l~~~l~~lGa~~i~~~~ 80 (558)
.|+.|||++++|+ |.+|..++.|.+.+ . +.++++++|+. |.+.+ +.+...+.+.+... .+.+-.
T Consensus 76 ~~D~Iiig~Pv~~-~~~p~~v~~fl~~~---~-----l~~k~v~~f~T~g~~~~---g~~~~~~~~~~~~~---~~~~~~ 140 (160)
T PRK07116 76 EYDVIFLGFPIWW-YVAPRIINTFLESY---D-----FSGKTVIPFATSGGSGI---GNAEKELKKSYPDA---NWKEGR 140 (160)
T ss_pred hCCEEEEECChhc-cccHHHHHHHHHhc---C-----CCCCEEEEEEeCCCCCc---CcHHHHHHHHCCcC---ccccCe
Confidence 4789999999995 88899888887643 2 77899999999 77665 33344444444222 222222
Q ss_pred ccCCCCCchhHHHHHHHHH
Q 008647 81 LGDDDQCIEDDFTAWRELV 99 (558)
Q Consensus 81 ~~d~~~~~~~~~~~W~~~l 99 (558)
..+.+ ..+.++++|++++
T Consensus 141 ~~~~~-~~~~~i~~wl~~~ 158 (160)
T PRK07116 141 LLNGG-ASKEEIKEWINKL 158 (160)
T ss_pred eecCC-CcHHHHHHHHHHc
Confidence 22211 2466899998764
No 115
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=94.85 E-value=0.11 Score=49.70 Aligned_cols=73 Identities=12% Similarity=-0.151 Sum_probs=59.6
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
.++.|||.++|| .|.+|..++.|++++..... ...+.++..++|+.+....-....+...+...|..+|..-+
T Consensus 68 ~aD~ii~GSPty-~g~~~~~lk~fld~~~~~~~-~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv 140 (197)
T TIGR01755 68 DYDAIIFGTPTR-FGNMASQMRNFLDQTGGLWA-SGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIV 140 (197)
T ss_pred HCCEEEEEeccc-ccCccHHHHHHHHhcccccc-ccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEe
Confidence 478999999999 79999999999999866432 23488999999999887766677777888888899998655
No 116
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=94.27 E-value=0.0068 Score=51.90 Aligned_cols=79 Identities=16% Similarity=0.158 Sum_probs=4.7
Q ss_pred CHHHHHHhCCC--CCCChhHHHHhhCCCC-----CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhc
Q 008647 307 SLLEVMAEFPS--ATPPIGVFFAAVAPHL-----QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNA 379 (558)
Q Consensus 307 ~~~d~l~~f~~--~~~~~~~~l~~~~p~~-----~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l 379 (558)
++++|....|. .+..+|||+-+.+|.+ +.+||||+|+|. ++.+.|.|+. .|..|..|.+.
T Consensus 15 ~~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~--~~~i~l~ik~-----------~g~~T~~L~~~ 81 (105)
T PF08022_consen 15 DVVEITIPKPSSPFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPE--DNSITLIIKA-----------RGGWTKRLYEH 81 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEEECCCCCCCCCCceEEEEEEcCcCcCcccccccEeeccCC--CCEEEEEEEe-----------CCCchHHHHHH
Confidence 44455555554 4678999998876754 577999999997 5789998874 37778877774
Q ss_pred C-CC-CCCCCccEEEEEeeCC
Q 008647 380 I-PL-EGNGDCSWAPIFIRPS 398 (558)
Q Consensus 380 ~-~G-~~~~~~~~v~v~~p~g 398 (558)
. .. .+.....++.|.||+|
T Consensus 82 ~~~~~~~~~~~~~v~idGPYG 102 (105)
T PF08022_consen 82 LSESPSKQGNRLRVFIDGPYG 102 (105)
T ss_dssp ---------------TTSTTS
T ss_pred HhhhcccCCCceEEEEECCCC
Confidence 2 11 0001114677778887
No 117
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=94.21 E-value=0.2 Score=48.12 Aligned_cols=73 Identities=12% Similarity=-0.145 Sum_probs=55.6
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
.++.|||.++|| .|.+|..++.|++++...-. ...+.++.+++||...+..-.--...+.+...|..+|..-+
T Consensus 69 ~aD~ii~gsPty-~g~~~~~lk~fld~~~~~~~-~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv 141 (200)
T PRK03767 69 DYDAIIFGTPTR-FGNMAGQMRNFLDQTGGLWA-KGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIV 141 (200)
T ss_pred hCCEEEEEeccc-CCCchHHHHHHHHHhccccc-cCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEe
Confidence 478999999999 89999999999999865422 13488999999999776543333445556777788998655
No 118
>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]
Probab=93.79 E-value=0.026 Score=59.36 Aligned_cols=61 Identities=30% Similarity=0.534 Sum_probs=55.1
Q ss_pred EEeecCcCc-h-----HHHHHHHHHHHHHHhCCCeEeecCcccCCCC--CchhHHHHHHHHHHHHHHHh
Q 008647 46 VFGLGNRQY-E-----HFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPELDQL 106 (558)
Q Consensus 46 vfGlGds~y-~-----~f~~~~~~l~~~l~~lGa~~i~~~~~~d~~~--~~~~~~~~W~~~l~~~l~~~ 106 (558)
|||+||+.| + .|++-.+.+..||.+++|.....+++|++++ +....+..|.-.||++|..-
T Consensus 1 vfgfs~tf~~Pk~~~~~ftkp~k~~l~r~~~l~a~a~vtlglg~d~d~~~p~ta~s~~~p~l~eal~~~ 69 (638)
T KOG0560|consen 1 VFGFSDTFYWPKEDKSYFTKPKKSLLVRLAQLTAPALVTLGLGVDQDPDGPRTAYSDWEPILWEALGKG 69 (638)
T ss_pred CccccccccCcccCccccCCchHHHHHHHHHhcCCceeeeccCCCCCCCCccccccccChHHHHHhcCC
Confidence 699999999 3 5999999999999999999999999999988 67888999998999988764
No 119
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=91.44 E-value=0.12 Score=45.15 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=30.3
Q ss_pred CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCCCC
Q 008647 333 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNF 400 (558)
Q Consensus 333 ~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F 400 (558)
-..|.|||.+.... .+++.|-|.+.. ..|.+|.|..+.++| +.|.|.+|.|.|
T Consensus 65 p~~R~YTvR~~d~~-~~~l~iDfv~Hg--------~~Gpas~WA~~A~pG------d~v~v~gP~g~~ 117 (117)
T PF08021_consen 65 PVMRTYTVRRFDPE-TGELDIDFVLHG--------DEGPASRWARSARPG------DRVGVTGPRGSF 117 (117)
T ss_dssp -EEEEEE--EEETT---EEEEEEE--S--------S--HHHHHHHH--TT-------EEEEEEEE---
T ss_pred CCCCCcCEeeEcCC-CCEEEEEEEECC--------CCCchHHHHhhCCCC------CEEEEeCCCCCC
Confidence 36799999987543 456666554331 138999999999999 999999999877
No 120
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=91.05 E-value=1.1 Score=41.76 Aligned_cols=68 Identities=13% Similarity=0.074 Sum_probs=53.8
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
..+.+||+++.| .|.+|.-.+.|.+|+... .+.++.+++++.| ..+.++...-..+...|..+||..+
T Consensus 65 ~AD~iI~~sP~Y-~~sip~~LK~~iD~~~~~-----~l~~K~v~~~~~g-g~~~~~~~~~~~l~~~l~~l~~~~~ 132 (171)
T TIGR03567 65 QADGVVVATPVY-KASYSGVLKALLDLLPQR-----ALRGKVVLPIATG-GSIAHLLAIDYALKPVLSALGARHI 132 (171)
T ss_pred HCCEEEEECCcc-cCCCCHHHHHHHHhCChh-----hhCCCEEEEEEcC-CchhHHHHHHHHHHHHHHHcCCccc
Confidence 357899999999 899999999999998432 3888899998888 4565555544568889999999644
No 121
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=90.62 E-value=0.92 Score=41.09 Aligned_cols=72 Identities=11% Similarity=-0.008 Sum_probs=54.4
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEee
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 77 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~ 77 (558)
..+.+||++++| .|.+|.-++.|++++.. .....+.++.+++++.|-+.... ..+...+...|..+|+.-+-
T Consensus 70 ~aD~iI~~sP~y-~~~~s~~lK~~lD~~~~--~~~~~~~~K~~~~i~~~g~~~g~-~~~~~~l~~~~~~~~~~~~~ 141 (152)
T PF03358_consen 70 EADGIIFASPVY-NGSVSGQLKNFLDRLSC--WFRRALRGKPVAIIAVGGGRRGG-LRALEQLRQILDYLGMIVVP 141 (152)
T ss_dssp HSSEEEEEEEEB-TTBE-HHHHHHHHTHHH--THTTTTTTSEEEEEEEESSSSTT-HHHHHHHHHHHHHTTBEEEC
T ss_pred cCCeEEEeecEE-cCcCChhhhHHHHHhcc--ccccccCCCEEEEEEEecCCcHH-HHHHHHHHHHHHHCCCEEcC
Confidence 367899999999 79999999999999974 11234899999999988665533 23556777788889986553
No 122
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=90.50 E-value=0.32 Score=45.75 Aligned_cols=42 Identities=14% Similarity=0.020 Sum_probs=35.4
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeec
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLG 50 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlG 50 (558)
.|+.|||.++|| .|.++..+..|.+.... .|+++++++|++|
T Consensus 46 ~yD~vIlGspi~-~G~~~~~~~~fl~~~~~------~l~~K~v~~F~v~ 87 (177)
T PRK11104 46 DYDRVVIGASIR-YGHFHSALYKFVKKHAT------QLNQMPSAFFSVN 87 (177)
T ss_pred HCCEEEEECccc-cCCcCHHHHHHHHHHHH------HhCCCeEEEEEec
Confidence 489999999999 78899999999766532 1789999999998
No 123
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=90.11 E-value=2.4 Score=40.38 Aligned_cols=68 Identities=12% Similarity=0.074 Sum_probs=54.8
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
+.+.+||+++.| .|..|.-.+.|++|+.. ..|.++.+++++.| ....+.-..-..+...|..+||..+
T Consensus 66 ~AD~iIi~tP~Y-~~s~pg~LKn~iD~l~~-----~~l~~K~v~iiat~-G~~~~~~~~~~~lr~~l~~l~a~~~ 133 (191)
T PRK10569 66 QADGLIVATPVY-KASFSGALKTLLDLLPE-----RALEHKVVLPLATG-GSVAHMLAVDYALKPVLSALKAQEI 133 (191)
T ss_pred HCCEEEEECCcc-CCCCCHHHHHHHHhCCh-----hhhCCCEEEEEEec-CCchhHHHHHHHHHHHHHHcCCeec
Confidence 467899999999 89999999999999943 24889999999998 5555555554677788889999754
No 124
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=89.32 E-value=1.6 Score=40.11 Aligned_cols=83 Identities=13% Similarity=0.096 Sum_probs=47.3
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEee-cCcCchHHHHHHHHHHHHHHhCCCeEeecCc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARLVPLG 80 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGl-Gds~y~~f~~~~~~l~~~l~~lGa~~i~~~~ 80 (558)
+|+.|++..+.| .|.+|.-+..|.+ +.+ ++|++++.|-. |.+... .+.+.+.+.+ +...+.+-.
T Consensus 73 ~YD~I~lG~PvW-~~~~~~pv~tFL~---~~~-----~~gK~v~~F~T~ggs~~~---~~~~~l~~~~---~~a~i~~g~ 137 (156)
T PF12682_consen 73 DYDTIFLGTPVW-WGTPPPPVRTFLE---QYD-----FSGKTVIPFCTSGGSGFG---NSLEDLKKLC---PGATILEGL 137 (156)
T ss_dssp G-SEEEEEEEEE-TTEE-CHHHHHHH---CTT-----TTTSEEEEEEE-SS--CH---HHHHHHHHH----TTSEE---E
T ss_pred cCCEEEEechHH-cCCCCHHHHHHHH---hcC-----CCCCcEEEEEeeCCCChh---HHHHHHHHHC---CCCEeecCe
Confidence 589999999999 7999998888854 433 78999999955 555442 2233333333 233444433
Q ss_pred ccCCCCCchhHHHHHHHHH
Q 008647 81 LGDDDQCIEDDFTAWRELV 99 (558)
Q Consensus 81 ~~d~~~~~~~~~~~W~~~l 99 (558)
......-.+.++.+|+++|
T Consensus 138 ~~~~~~~~~~~i~~Wl~~i 156 (156)
T PF12682_consen 138 AINRGSVSEEEIKEWLKKI 156 (156)
T ss_dssp E---S---HHHHHHHHHHT
T ss_pred EEeCCCcCHHHHHHHHHhC
Confidence 3322212678899998764
No 125
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=86.91 E-value=3.6 Score=38.35 Aligned_cols=68 Identities=10% Similarity=-0.040 Sum_probs=51.2
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
..+.+||+++.| .|.+|.-.+.|++|+.. ..+.++..++++.|..... ...+-..+...|..+|+..+
T Consensus 68 ~AD~iIi~tP~Y-~~s~~~~LKn~lD~~~~-----~~l~~K~~~~v~~~g~~~~-~~~~~~~l~~~~~~l~~~~~ 135 (174)
T TIGR03566 68 SADLLVVGSPVY-RGSYTGLFKHLFDLVDP-----NALIGKPVLLAATGGSERH-ALMVEHQLRPLFGFFQALTL 135 (174)
T ss_pred HCCEEEEECCcC-cCcCcHHHHHHHHhcCH-----hHhCCCEEEEEEecCCccc-hHHHHHHHHHHHHHhCcccc
Confidence 357899999999 79999999999999853 2388999999999765432 22234456677778887654
No 126
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=85.14 E-value=5 Score=36.06 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=37.1
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNR 52 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds 52 (558)
.|+.|||.+++|+ |..|..+.+|.+.+... |.+.++++|..|-+
T Consensus 43 ~yD~vi~gspiy~-g~~~~~~~~fi~~~~~~------l~~k~v~~f~~~~~ 86 (143)
T PF12724_consen 43 DYDAVIFGSPIYA-GRIPGEMREFIKKNKDN------LKNKKVALFSVGGS 86 (143)
T ss_pred cCCEEEEEEEEEC-CcCCHHHHHHHHHHHHH------HcCCcEEEEEEeCC
Confidence 5899999999995 89999999999877542 67889999988655
No 127
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=78.63 E-value=7.5 Score=35.89 Aligned_cols=56 Identities=21% Similarity=0.190 Sum_probs=41.2
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeec----CcCchHHHHHHHHHHHHHHh
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLG----NRQYEHFNKIGIVLDEELCK 70 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlG----ds~y~~f~~~~~~l~~~l~~ 70 (558)
+|++|++...++ .|.++.++++|.+.| ++.++++||.- |+ +++..+.+++...+.+
T Consensus 39 ~yD~i~lG~w~d-~G~~d~~~~~fl~~l----------~~KkV~lF~T~G~~~~s--~~~~~~~~~~~~~~~~ 98 (160)
T PF12641_consen 39 DYDLIFLGFWID-KGTPDKDMKEFLKKL----------KGKKVALFGTAGAGPDS--EYAKKILKNVEALLPK 98 (160)
T ss_pred CCCEEEEEcCcc-CCCCCHHHHHHHHHc----------cCCeEEEEEecCCCCch--HHHHHHHHHHHHhhcc
Confidence 689999999999 599999999986664 45678888753 33 4566666666655544
No 128
>PRK00170 azoreductase; Reviewed
Probab=77.37 E-value=18 Score=34.30 Aligned_cols=73 Identities=7% Similarity=-0.141 Sum_probs=51.5
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCC--------CCCCCCCCceEEEEeecCcCc--hHHHHHHHHHHHHHHhCC
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGN--------DRGPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQG 72 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~--------~~~~~l~~~~~avfGlGds~y--~~f~~~~~~l~~~l~~lG 72 (558)
.+.|||+++-| .+..|.-.+.|.+++.... .+...+.++++.++......+ ..+..+...+...|.-+|
T Consensus 87 AD~iV~~sP~y-~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~~~~~~~~~G 165 (201)
T PRK00170 87 ADKIVIAAPMY-NFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPYLKTFLGFIG 165 (201)
T ss_pred CCEEEEeeccc-ccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHHHHHHHHhcC
Confidence 57899999999 7889999999999985421 112357889998888533222 222445566777788889
Q ss_pred CeEe
Q 008647 73 GARL 76 (558)
Q Consensus 73 a~~i 76 (558)
.+.+
T Consensus 166 ~~~~ 169 (201)
T PRK00170 166 ITDV 169 (201)
T ss_pred CCce
Confidence 8744
No 129
>PRK13556 azoreductase; Provisional
Probab=76.71 E-value=23 Score=34.00 Aligned_cols=73 Identities=4% Similarity=-0.028 Sum_probs=55.2
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCC--------CCCCCCCceEEEEeecCcCc-----hHHHHHHHHHHHHHH
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGND--------RGPWLQQLKFGVFGLGNRQY-----EHFNKIGIVLDEELC 69 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~--------~~~~l~~~~~avfGlGds~y-----~~f~~~~~~l~~~l~ 69 (558)
.+.|||+++-| ++.+|.-.+.+++++..... +...|.+++..|+...-..| ..+..+...+...|.
T Consensus 90 AD~iVi~~P~y-n~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~~~~~l~~il~ 168 (208)
T PRK13556 90 ADKVVFAFPLW-NFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEMAVKYVASMMG 168 (208)
T ss_pred CCEEEEecccc-ccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhccHHHHHHHHH
Confidence 57899999999 78899999999999986421 12358899999986633345 455556677888888
Q ss_pred hCCCeEe
Q 008647 70 KQGGARL 76 (558)
Q Consensus 70 ~lGa~~i 76 (558)
-+|++.+
T Consensus 169 ~~G~~~~ 175 (208)
T PRK13556 169 FFGVTNM 175 (208)
T ss_pred hcCCCce
Confidence 8998754
No 130
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=76.57 E-value=27 Score=33.08 Aligned_cols=100 Identities=13% Similarity=-0.033 Sum_probs=69.8
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCC----------CCCCCCCceEEEEe-ecCcCc--h-------HHHHHHH
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGND----------RGPWLQQLKFGVFG-LGNRQY--E-------HFNKIGI 62 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~----------~~~~l~~~~~avfG-lGds~y--~-------~f~~~~~ 62 (558)
.+.|||+++.| .+.+|.-.+.|.+.+..... ....|.++++.|+- .|...+ . .+.....
T Consensus 79 AD~iV~~~Pl~-~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~ 157 (199)
T PF02525_consen 79 ADHIVFAFPLY-WFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSMDHLLP 157 (199)
T ss_dssp SSEEEEEEEEB-TTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHHHHHHH
T ss_pred cCcceEeccce-ecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCChhhhHH
Confidence 57999999999 78899999999998844211 12468888887764 555532 2 4666777
Q ss_pred HHHHHHHhCCCeEeecCcccCCCC-CchhHHHHHHHHHHHHH
Q 008647 63 VLDEELCKQGGARLVPLGLGDDDQ-CIEDDFTAWRELVWPEL 103 (558)
Q Consensus 63 ~l~~~l~~lGa~~i~~~~~~d~~~-~~~~~~~~W~~~l~~~l 103 (558)
.+...+.-+|.+.+-....++... +.+..+++|++++-+.|
T Consensus 158 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T PF02525_consen 158 YLRGILKFCGIKDVESFSFEGVDNPDREEALEKALERAAEHL 199 (199)
T ss_dssp HHHHHHHHTTEEEEEEEEEESTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCceeeEEEEeCCCCCChHHHHHHHHHHHHhhC
Confidence 788899999999886655444322 33777888887765543
No 131
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=75.43 E-value=3 Score=44.02 Aligned_cols=76 Identities=11% Similarity=-0.090 Sum_probs=60.4
Q ss_pred cEEEEEeccCCCCCCCccHHHHHHHHhcCCCC---CCCCCCceEEEEeecCcCc--hHHHHHHHHHHHHHHhCCCeEeec
Q 008647 4 SIYLRLTCRYGDGEPTDNAARFYKWFTEGNDR---GPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVP 78 (558)
Q Consensus 4 ~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~---~~~l~~~~~avfGlGds~y--~~f~~~~~~l~~~l~~lGa~~i~~ 78 (558)
-.+++.+-|.--|.+.+..++||+||.+.... +....-.|+.++|.|++.= ..||.+++-+-.+++-+||+.+.+
T Consensus 408 vsvda~Tktslk~idrPlfkdFwEr~~d~l~~lk~K~qrtvyRlTlVkg~n~dd~~Ayfnlv~rglp~fieVkGvty~ge 487 (601)
T KOG1160|consen 408 VSVDASTKTSLKKIDRPLFKDFWERFLDSLKALKKKQQRTVYRLTLVKGWNSDDLPAYFNLVSRGLPDFIEVKGVTYCGE 487 (601)
T ss_pred EEEeecchhhhcCCCCchHHHHHHHHHHHHHHHHHhhcceEEEEEEeccccccccHHHHHHHhccCCceEEEeceeEecc
Confidence 35677777777788889999999999763211 1235567999999999987 789999999999999999988755
Q ss_pred C
Q 008647 79 L 79 (558)
Q Consensus 79 ~ 79 (558)
.
T Consensus 488 s 488 (601)
T KOG1160|consen 488 S 488 (601)
T ss_pred c
Confidence 4
No 132
>PRK09739 hypothetical protein; Provisional
Probab=72.39 E-value=29 Score=32.93 Aligned_cols=103 Identities=12% Similarity=-0.043 Sum_probs=61.8
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCC---CCCCCCCceEEEEeecCcCchHH-----HH-HHHHHH-HHHHhC
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGND---RGPWLQQLKFGVFGLGNRQYEHF-----NK-IGIVLD-EELCKQ 71 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~---~~~~l~~~~~avfGlGds~y~~f-----~~-~~~~l~-~~l~~l 71 (558)
..+.+||+++-| .+.+|.-.+.|.+.+..... ....|.+++.+++......|..| .. ....+. ..+.-+
T Consensus 79 ~AD~iV~~~P~y-~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (199)
T PRK09739 79 EHDALVFVFPLW-WYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGSKESFVKRGWEKNMSDYLNVGMASYL 157 (199)
T ss_pred hCCEEEEECchh-hhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCChHHhcccccccHHHHHHHhhhhhcC
Confidence 467899999999 78899999999998854221 12347788888876543444333 22 222344 444456
Q ss_pred CCeEeecCcccCC-----CCCchhHHHHHHHHHHHHHHH
Q 008647 72 GGARLVPLGLGDD-----DQCIEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 72 Ga~~i~~~~~~d~-----~~~~~~~~~~W~~~l~~~l~~ 105 (558)
|.+.+-....+.. ........+.|++++.....+
T Consensus 158 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~ 196 (199)
T PRK09739 158 GIEDSDVTFLYNTLVFDGEELHASHYQSLLSQAREMVDA 196 (199)
T ss_pred CccccceEEEecccccccccCCHHHHHHHHHHHHHHHHH
Confidence 7654311111111 123466788888877665543
No 133
>PRK06934 flavodoxin; Provisional
Probab=69.97 E-value=23 Score=34.48 Aligned_cols=83 Identities=7% Similarity=0.007 Sum_probs=50.8
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEee-cCcCc-hHHHHHHHHHHHHHHhCCCeEeecC
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQY-EHFNKIGIVLDEELCKQGGARLVPL 79 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGl-Gds~y-~~f~~~~~~l~~~l~~lGa~~i~~~ 79 (558)
+|+.|+++.+.| .|.+|.-...|.+. .+ |+|++++.|.. |-+.. ..+... .+.. -+|+.+.+-
T Consensus 129 ~YD~I~IG~PIW-wg~~P~~V~tFLe~---~d-----~~GK~I~pF~T~ggsg~g~s~~~i----~~l~--~~a~~v~~G 193 (221)
T PRK06934 129 DYDQIFIGYPIW-WYKMPMVMYSFFEQ---HD-----FSGKTLIPFTTHGGSRFSDSLREI----KRLQ--PNAQLVTQG 193 (221)
T ss_pred hCCEEEEEcchh-hccccHHHHHHHHh---cC-----CCCCEEEEEEecCCCCccchHHHH----HHHc--CCcceeccc
Confidence 589999999999 78899988888544 33 78999999965 34444 233322 2221 133233222
Q ss_pred cc--cCCCC--CchhHHHHHHHHH
Q 008647 80 GL--GDDDQ--CIEDDFTAWRELV 99 (558)
Q Consensus 80 ~~--~d~~~--~~~~~~~~W~~~l 99 (558)
.. +++.. ..+..+.+|++++
T Consensus 194 l~i~~~~~~~~~~~~~I~~Wl~~l 217 (221)
T PRK06934 194 LAISRNDVTDDDTPKEIINWLNTL 217 (221)
T ss_pred eeeecCcccccchHHHHHHHHHHc
Confidence 22 22211 2478899998753
No 134
>PRK01355 azoreductase; Reviewed
Probab=61.41 E-value=65 Score=30.63 Aligned_cols=102 Identities=9% Similarity=-0.023 Sum_probs=62.5
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCC--------CC---CCCCCCceEEEEeecCc--CchHHHHHHHHHHHHHH
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGN--------DR---GPWLQQLKFGVFGLGNR--QYEHFNKIGIVLDEELC 69 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~--------~~---~~~l~~~~~avfGlGds--~y~~f~~~~~~l~~~l~ 69 (558)
.+.+||+++.| .+.+|.-.+.|++++.... .. ...+.+++..|+..... .+..|......+...+.
T Consensus 78 AD~iV~~sP~y-~~~ipa~LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~~~~~~~l~~~~~ 156 (199)
T PRK01355 78 VDKVVISCPMT-NFNVPATLKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPWGSHTNYLEGTWE 156 (199)
T ss_pred CCEEEEEcCcc-ccCChHHHHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCccchHHHHHHHHH
Confidence 57899999999 7889999999999986421 00 13477878877644332 12224455667778888
Q ss_pred hCCCeEeecCcccCCCC-Cc-hhHHHHHHHHHHHHHHH
Q 008647 70 KQGGARLVPLGLGDDDQ-CI-EDDFTAWRELVWPELDQ 105 (558)
Q Consensus 70 ~lGa~~i~~~~~~d~~~-~~-~~~~~~W~~~l~~~l~~ 105 (558)
-+|.+.+-......... .. ......|++.-.+.+.+
T Consensus 157 ~~G~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 194 (199)
T PRK01355 157 FLGAKVVDSILLAGTKVEPLSNKTPKEIVEEFDKEIIE 194 (199)
T ss_pred hcCCCceeEEEEecccCCccccccHHHHHHHHHHHHHH
Confidence 89998654433322222 11 12266666554444443
No 135
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=61.03 E-value=25 Score=28.93 Aligned_cols=38 Identities=21% Similarity=0.349 Sum_probs=30.2
Q ss_pred EEEEeeeecCCCCCCCcEEEEEEEecCC--CccccCCCeEEEeec
Q 008647 161 VNVAVRRELHKPDSDRSCIHLEFDVSGT--GITYETGDHVGVYVE 203 (558)
Q Consensus 161 ~~v~~~~~l~~~~~~~~~~~i~l~~~~~--~~~y~~GD~l~i~p~ 203 (558)
|+|++.++++. ++++++|.+++. ...|.||.++.|.-.
T Consensus 2 ~~v~~~~~~s~-----~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~ 41 (99)
T PF00970_consen 2 AKVVEIEELSP-----DVKIFRFKLPDPDQKLDFKPGQFVSVRVP 41 (99)
T ss_dssp EEEEEEEEESS-----SEEEEEEEESSTTTT-SSTTT-EEEEEEE
T ss_pred EEEEEEEEeCC-----CeEEEEEEECCCCcccccCcceEEEEEEc
Confidence 78999999984 688999998843 378999999999877
No 136
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=60.67 E-value=9.8 Score=35.21 Aligned_cols=57 Identities=21% Similarity=0.272 Sum_probs=42.6
Q ss_pred CCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcccCCCCCchhHHHHH
Q 008647 39 LQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 95 (558)
Q Consensus 39 l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~~d~~~~~~~~~~~W 95 (558)
+...+++|+=.||+....++..+..+..+|++.|++...-....|+.......+++|
T Consensus 2 ~~~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~ 58 (163)
T TIGR02667 2 FIPLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAW 58 (163)
T ss_pred CCccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHH
Confidence 567899999999999888899999999999999997554434444443444555554
No 137
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=54.40 E-value=52 Score=32.04 Aligned_cols=71 Identities=8% Similarity=-0.095 Sum_probs=52.2
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
.+-+||+++-| +|..|...+.+.+|+.....+...+.++-++|+|..-... =-.+...|...|..+|+..+
T Consensus 91 ADgvii~TPEY-n~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaSgg~~--g~ra~~~LR~vl~~l~a~v~ 161 (219)
T TIGR02690 91 SEGQVWCSPER-HGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVSGGSQ--SFNAVNILRRLGRWMRMPTI 161 (219)
T ss_pred CCEEEEeCCcc-ccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeCCcHh--HHHHHHHHHHHHHHCCCccc
Confidence 46799999999 7889999999999997642212348899999988642211 12355778888888998644
No 138
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=53.45 E-value=2e+02 Score=27.14 Aligned_cols=104 Identities=11% Similarity=-0.016 Sum_probs=65.0
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCC----CCCCCCCceEEEEe-ecCc--Cch--HHHH-----HHHHHHHH
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGND----RGPWLQQLKFGVFG-LGNR--QYE--HFNK-----IGIVLDEE 67 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~----~~~~l~~~~~avfG-lGds--~y~--~f~~-----~~~~l~~~ 67 (558)
..+.|||..+.| ...+|.-.+.+.+....... ....|+|+++.|+- .|.. .|. -|+. .-.-+...
T Consensus 61 ~aD~iV~~fPl~-w~~~Pa~LK~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~ll~p~~~~ 139 (184)
T PRK04930 61 EHDVIVFQHPLY-TYSCPALLKEWLDRVLSRGFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYPMSDILRPFELT 139 (184)
T ss_pred hCCEEEEEcCcc-ccCCcHHHHHHHHHHHhcCcccCCCCCccCCCEEEEEEECCCChHHhCccCcCCCCHHHHHHHHHHH
Confidence 468999999999 66789999999887765321 12358899888864 4443 241 1221 22223344
Q ss_pred HHhCCCeEeecCcccCCCCCchhHHHHHHHHHHHHHHHh
Q 008647 68 LCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQL 106 (558)
Q Consensus 68 l~~lGa~~i~~~~~~d~~~~~~~~~~~W~~~l~~~l~~~ 106 (558)
+.-+|.+-+-+....+.....+++.+.|+++..+.|...
T Consensus 140 ~~~~Gm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (184)
T PRK04930 140 AAMCRMHWLSPIIIYWARRQSPEELASHARAYGDWLANP 178 (184)
T ss_pred HHHcCCeEcCcEEEecCCCCCHHHHHHHHHHHHHHHhhh
Confidence 445788766555544444445677888877766666654
No 139
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=50.51 E-value=41 Score=32.24 Aligned_cols=73 Identities=11% Similarity=-0.129 Sum_probs=47.3
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHH-HhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKW-FTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~-l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
.++.+||.++|| .|..+..++.|++. +...-. ...|.++..++|..+-+.=-.-......+...+...|...+
T Consensus 75 ~aD~iI~gsPvy-~g~vsa~~K~fiDR~~~~~~~-~~~l~~k~~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~v 148 (207)
T COG0655 75 EADGIIFGSPVY-FGNVSAQMKAFIDRSTGPLWA-PGALRGKVGAAFVSGGSRGGGQEATLLSLLLFFLHHGMIVV 148 (207)
T ss_pred HCCEEEEeCCee-cCCchHHHHHHHhhcchhhcc-cchhccccceEEEEeccCCCChHHHHHHHHHHHHHcCCeEe
Confidence 368999999999 89999999999998 433221 13477777777766655332111344445555555665433
No 140
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=50.32 E-value=34 Score=33.14 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=32.7
Q ss_pred eeEEEEeeeecCCCCCCCcEEEEEEEecCC-CccccCCCeEEEeecC
Q 008647 159 CRVNVAVRRELHKPDSDRSCIHLEFDVSGT-GITYETGDHVGVYVEN 204 (558)
Q Consensus 159 ~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~-~~~y~~GD~l~i~p~N 204 (558)
|.++|++.+.++. +++++.|+++.. .+.|+||.++.|..++
T Consensus 1 ~~~~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 42 (232)
T cd06212 1 FVGTVVAVEALTH-----DIRRLRLRLEEPEPIKFFAGQYVDITVPG 42 (232)
T ss_pred CceEEEEEeecCC-----CeEEEEEEcCCCCcCCcCCCCeEEEEcCC
Confidence 3578999998875 688999987653 5789999999998654
No 141
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=46.76 E-value=38 Score=33.36 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=27.7
Q ss_pred cCCCCCC-CcEEEEEEEecCCCccccCCCeEEEeecC
Q 008647 169 LHKPDSD-RSCIHLEFDVSGTGITYETGDHVGVYVEN 204 (558)
Q Consensus 169 l~~~~~~-~~~~~i~l~~~~~~~~y~~GD~l~i~p~N 204 (558)
++.+++. .++++|+|+.++....|+||..+.|.+.+
T Consensus 8 ~~~~~~~~~~v~~l~l~~~~~~~~f~pGQ~v~l~~~~ 44 (245)
T cd06200 8 LLNPGSQGAPLWRLRLTPPDAGAQWQAGDIAEIGPRH 44 (245)
T ss_pred ecCCCCCCCceEEEEEecCCCCCCccCCcEEEecCCC
Confidence 4444442 38999999987556899999999998765
No 142
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=45.74 E-value=19 Score=31.84 Aligned_cols=53 Identities=13% Similarity=0.119 Sum_probs=37.3
Q ss_pred eEEEEeecCcCc--hHHHHHHHHHHHHHHhCCCeEeecCcccCCCCCchhHHHHH
Q 008647 43 KFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 95 (558)
Q Consensus 43 ~~avfGlGds~y--~~f~~~~~~l~~~l~~lGa~~i~~~~~~d~~~~~~~~~~~W 95 (558)
+++|+-.||.-+ ..++..+..+.++|++.|.+........|+.....+.+++|
T Consensus 1 ~v~ii~~G~El~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~ 55 (133)
T cd00758 1 RVAIVTVSDELSQGQIEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEA 55 (133)
T ss_pred CEEEEEeCccccCCceEEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHH
Confidence 578999999866 56788889999999999987655444445443344444444
No 143
>PRK13555 azoreductase; Provisional
Probab=44.94 E-value=2.1e+02 Score=27.45 Aligned_cols=73 Identities=8% Similarity=-0.019 Sum_probs=52.2
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCC--------CCCCCCCCceEEEEeecCcCc-h----HHHHHHHHHHHHHH
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGN--------DRGPWLQQLKFGVFGLGNRQY-E----HFNKIGIVLDEELC 69 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~--------~~~~~l~~~~~avfGlGds~y-~----~f~~~~~~l~~~l~ 69 (558)
.+.+||+++-| ++.+|.-.+.|++++.... .....|++++..|++.-...| . ........+...|.
T Consensus 90 AD~lvi~~P~~-n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~~~~~~~~~~~~~~yl~~il~ 168 (208)
T PRK13555 90 ADKVVFAFPLW-NFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDYSSEQMAPMEMAVNYVTTVLG 168 (208)
T ss_pred cCEEEEEcCcc-cccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCCCCCCchhhhhHHHHHHHHHH
Confidence 57899999999 6889999999999997631 112458899999997733345 2 22334456777888
Q ss_pred hCCCeEe
Q 008647 70 KQGGARL 76 (558)
Q Consensus 70 ~lGa~~i 76 (558)
-+|.+.+
T Consensus 169 ~~Gi~~v 175 (208)
T PRK13555 169 FWGITNP 175 (208)
T ss_pred hcCCCce
Confidence 8898643
No 144
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=43.48 E-value=52 Score=31.77 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=32.4
Q ss_pred eEEEEeeeecCCCCCCCcEEEEEEEecCCC-ccccCCCeEEEeecC
Q 008647 160 RVNVAVRRELHKPDSDRSCIHLEFDVSGTG-ITYETGDHVGVYVEN 204 (558)
Q Consensus 160 ~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~-~~y~~GD~l~i~p~N 204 (558)
.++|++++.+++ +++.++|+.++.. ..|+||.++.|..++
T Consensus 3 ~~~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 43 (235)
T cd06217 3 VLRVTEIIQETP-----TVKTFRLAVPDGVPPPFLAGQHVDLRLTA 43 (235)
T ss_pred eEEEEEEEecCC-----CeEEEEEECCCCCcCCcCCcCeEEEEEec
Confidence 478888998874 6889999877632 789999999998764
No 145
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=43.10 E-value=53 Score=27.57 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=39.6
Q ss_pred CceEEEEeecCc---CchHHHHHHHHHHHHHHhCCCeEeecCcccCCCCCchhHHH
Q 008647 41 QLKFGVFGLGNR---QYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFT 93 (558)
Q Consensus 41 ~~~~avfGlGds---~y~~f~~~~~~l~~~l~~lGa~~i~~~~~~d~~~~~~~~~~ 93 (558)
|++|-+=.+|=. .|+.-..+.+++++.+.+.|+.|++-..+.|+..+-+..++
T Consensus 32 Gl~y~~~pm~T~IEGe~dev~~~i~~~~e~~~~~G~~Rv~t~ikid~R~dk~~~~~ 87 (97)
T TIGR00106 32 GLKYELHPMGTLIEGDLDELFEAIKAIHEAVLEKGSDRVYTSIKIDTRTDKHRTLR 87 (97)
T ss_pred CCCeEecCCccEEecCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEecCCCCCCHH
Confidence 344444444333 38888899999999999999999999999998765444444
No 146
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=42.80 E-value=48 Score=31.67 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=32.3
Q ss_pred eEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCC
Q 008647 160 RVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENC 205 (558)
Q Consensus 160 ~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~ 205 (558)
.++|++.+.+++ ++++++|+.++ .+.|+||.++.|.-.++
T Consensus 2 ~~~v~~~~~~~~-----~~~~~~l~~~~-~~~~~pGQ~v~l~~~~~ 41 (218)
T cd06196 2 TVTLLSIEPVTH-----DVKRLRFDKPE-GYDFTPGQATEVAIDKP 41 (218)
T ss_pred ceEEEEEEEcCC-----CeEEEEEcCCC-cCCCCCCCEEEEEeeCC
Confidence 478888888874 68999998765 58999999999975543
No 147
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=38.92 E-value=46 Score=32.32 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=31.7
Q ss_pred eeEEEEeeeecCCCCCCCcEEEEEEEecCCC---ccccCCCeEEEeec
Q 008647 159 CRVNVAVRRELHKPDSDRSCIHLEFDVSGTG---ITYETGDHVGVYVE 203 (558)
Q Consensus 159 ~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~---~~y~~GD~l~i~p~ 203 (558)
+.++|++.+.+++ +++.++|+.+.+. ..|+||.++.|..+
T Consensus 2 ~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~ 44 (241)
T cd06214 2 HPLTVAEVVRETA-----DAVSITFDVPEELRDAFRYRPGQFLTLRVP 44 (241)
T ss_pred ceEEEEEEEecCC-----CeEEEEEecCcccCCCCCcCCCCeEEEEee
Confidence 3578888888873 6888899887532 58999999999976
No 148
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=38.17 E-value=76 Score=30.53 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=33.0
Q ss_pred eeEEEEeeeecCCCCCCCcEEEEEEEecC-CCccccCCCeEEEeecC
Q 008647 159 CRVNVAVRRELHKPDSDRSCIHLEFDVSG-TGITYETGDHVGVYVEN 204 (558)
Q Consensus 159 ~~~~v~~~~~l~~~~~~~~~~~i~l~~~~-~~~~y~~GD~l~i~p~N 204 (558)
+.++|++.+.+++ +++.|.|+.++ ....|+||.++.|..++
T Consensus 2 ~~~~V~~~~~~t~-----~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~ 43 (228)
T cd06209 2 FEATVTEVERLSD-----STIGLTLELDEAGALAFLPGQYVNLQVPG 43 (228)
T ss_pred eeEEEEEEEEcCC-----CeEEEEEEcCCCCcCccCCCCEEEEEeCC
Confidence 3588989998884 68999998775 25789999999998654
No 149
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=38.13 E-value=78 Score=31.16 Aligned_cols=42 Identities=19% Similarity=0.304 Sum_probs=33.6
Q ss_pred ceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCC
Q 008647 158 PCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENC 205 (558)
Q Consensus 158 ~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~ 205 (558)
+..++|++.+.+++ +++.++|+.+ ....|+||.++.|..++.
T Consensus 4 ~~~~~V~~~~~~t~-----d~~~l~l~~~-~~~~~~pGQ~v~l~~~~~ 45 (250)
T PRK00054 4 PENMKIVENKEIAP-----NIYTLVLDGE-KVFDMKPGQFVMVWVPGV 45 (250)
T ss_pred ceEEEEEEEEEecC-----CeEEEEEeCc-cccCCCCCcEEEEEeCCC
Confidence 45689999999884 6889998854 468899999999986654
No 150
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=37.46 E-value=92 Score=29.26 Aligned_cols=69 Identities=13% Similarity=0.070 Sum_probs=52.6
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEee
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 77 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~ 77 (558)
..+.+||+|+-| +|..|.-.+...+||-... +.++..+++|-|-...- --.+...+...|..+|+..+-
T Consensus 67 ~aD~li~~tPeY-n~s~pg~lKnaiD~l~~~~-----~~~Kpv~~~~~s~g~~~-~~~a~~~Lr~vl~~~~~~~~~ 135 (184)
T COG0431 67 AADGLIIATPEY-NGSYPGALKNAIDWLSREA-----LGGKPVLLLGTSGGGAG-GLRAQNQLRPVLSFLGARVIP 135 (184)
T ss_pred hCCEEEEECCcc-CCCCCHHHHHHHHhCCHhH-----hCCCcEEEEecCCCchh-HHHHHHHHHHHHHhcCceecc
Confidence 357899999999 7999999999999996652 78888888777665542 333456677788888886653
No 151
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=37.41 E-value=78 Score=30.76 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=33.7
Q ss_pred ceeEEEEeeeecCCCCCCCcEEEEEEEecCCC-ccccCCCeEEEeecC
Q 008647 158 PCRVNVAVRRELHKPDSDRSCIHLEFDVSGTG-ITYETGDHVGVYVEN 204 (558)
Q Consensus 158 ~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~-~~y~~GD~l~i~p~N 204 (558)
++.++|++.+.+++ +++.++|+.+... ..|+||.++.|..++
T Consensus 6 ~~~~~v~~~~~~t~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 48 (238)
T cd06211 6 DFEGTVVEIEDLTP-----TIKGVRLKLDEPEEIEFQAGQYVNLQAPG 48 (238)
T ss_pred EEeEEEEEEEecCC-----CEEEEEEEcCCCCcCccCCCCeEEEEcCC
Confidence 45789999999984 6889999887532 589999999998654
No 152
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=36.68 E-value=1.2e+02 Score=32.25 Aligned_cols=67 Identities=13% Similarity=-0.033 Sum_probs=50.8
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEee-cCcCchHHHHHHHHHHHHHHhCCCeEeecC
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARLVPL 79 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGl-Gds~y~~f~~~~~~l~~~l~~lGa~~i~~~ 79 (558)
++.-+++.++|++ ++++..++.+.-.+.... ..++..+|||. |.+. .+.+.+.++|+.+|-+-..+-
T Consensus 297 ~a~~~vvGsPT~~-~~~~p~i~~~l~~v~~~~-----~~~k~~~vfgS~GW~g-----~av~~i~~~l~~~g~~~~~~~ 364 (388)
T COG0426 297 DAKGLVVGSPTIN-GGAHPPIQTALGYVLALA-----PKNKLAGVFGSYGWSG-----EAVDLIEEKLKDLGFEFGFDG 364 (388)
T ss_pred hcceEEEecCccc-CCCCchHHHHHHHHHhcc-----CcCceEEEEeccCCCC-----cchHHHHHHHHhcCcEEeccc
Confidence 4567999999996 556667888888888876 45677888885 3443 357899999999998776653
No 153
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=35.46 E-value=1.1e+02 Score=29.75 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=33.2
Q ss_pred eeEEEEeeeecCCCCCCCcEEEEEEEecCCC--ccccCCCeEEEeecCC
Q 008647 159 CRVNVAVRRELHKPDSDRSCIHLEFDVSGTG--ITYETGDHVGVYVENC 205 (558)
Q Consensus 159 ~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~--~~y~~GD~l~i~p~N~ 205 (558)
..++|++.+.++. ++++|+|+.++.. ..|+||+++.|...++
T Consensus 7 ~~~~v~~~~~~s~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~ 50 (247)
T cd06184 7 RPFVVARKVAESE-----DITSFYLEPADGGPLPPFLPGQYLSVRVKLP 50 (247)
T ss_pred EEEEEEEEEEcCC-----CeEEEEEEeCCCCcCCCCCCCCEEEEEEecC
Confidence 3578888988874 6899999877532 6899999999996553
No 154
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=35.40 E-value=41 Score=30.54 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=38.6
Q ss_pred ceEEEEeecCcCc--hHHHHHHHHHHHHHHhCCCeEeecCcccCCCCCchhHHHHH
Q 008647 42 LKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 95 (558)
Q Consensus 42 ~~~avfGlGds~y--~~f~~~~~~l~~~l~~lGa~~i~~~~~~d~~~~~~~~~~~W 95 (558)
++++|+-.||..+ .-++..+..+.++|++.|++........|+.+...+.+..|
T Consensus 1 ~~~~ii~~~~e~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~ 56 (152)
T cd00886 1 LRAAVLTVSDTRSAGEAEDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEW 56 (152)
T ss_pred CEEEEEEEcCcccCCCCccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHH
Confidence 4789999999877 56888888899999999997665544555543334444444
No 155
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=34.54 E-value=90 Score=32.21 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=35.9
Q ss_pred CCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCC
Q 008647 155 IHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENC 205 (558)
Q Consensus 155 ~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~ 205 (558)
...|+.++|++.+.+++ +++.++|..++ ...|+||.++.|..++.
T Consensus 6 ~~~~~~~~V~~i~~~t~-----~v~~l~l~~~~-~~~f~pGQfv~l~~~~~ 50 (332)
T PRK10684 6 PQCPNRMQVHSIVQETP-----DVWTISLICHD-FYPYRAGQYALVSIRNS 50 (332)
T ss_pred CCCceeEEEEEEEccCC-----CeEEEEEcCCC-CCCcCCCCEEEEEecCC
Confidence 35677899999999884 68888887554 57899999999976654
No 156
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=33.71 E-value=34 Score=30.73 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=37.9
Q ss_pred eEEEEeecCcCc---------hHHHHHHHHHHHHHHhCCCeEeecCcccCCCCCchhHHHHH
Q 008647 43 KFGVFGLGNRQY---------EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 95 (558)
Q Consensus 43 ~~avfGlGds~y---------~~f~~~~~~l~~~l~~lGa~~i~~~~~~d~~~~~~~~~~~W 95 (558)
+++|+-.||.-+ .-++..+..+.++|++.|++-.......|+.....+.+++|
T Consensus 2 rv~ii~tGdEl~~~~~~~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~ 63 (144)
T TIGR00177 2 RVAVISTGDELVEPGQPLEPGQIYDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKA 63 (144)
T ss_pred EEEEEEcCcccccCCCCCCCCeEEeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHH
Confidence 688999999755 34677888999999999997665545555554455555555
No 157
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=32.06 E-value=1e+02 Score=29.67 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=31.6
Q ss_pred eEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecC
Q 008647 160 RVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVEN 204 (558)
Q Consensus 160 ~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N 204 (558)
.++|++.+.+++ +++.++|..+. ...|+||+++.|..+.
T Consensus 2 ~~~v~~~~~~t~-----~~~~~~l~~~~-~~~~~pGQ~~~l~~~~ 40 (227)
T cd06213 2 RGTIVAQERLTH-----DIVRLTVQLDR-PIAYKAGQYAELTLPG 40 (227)
T ss_pred eEEEEEEeecCC-----CEEEEEEecCC-CCCcCCCCEEEEEeCC
Confidence 478888988874 68899988653 5789999999998754
No 158
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=31.94 E-value=61 Score=27.60 Aligned_cols=37 Identities=8% Similarity=0.186 Sum_probs=27.2
Q ss_pred chHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCC
Q 008647 516 GMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGR 552 (558)
Q Consensus 516 ~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R 552 (558)
++...=.+-|.+-+++.|.++.++|++|+.+|.++.+
T Consensus 20 a~~~ek~~klvDelVkkGeln~eEak~~vddl~~q~k 56 (108)
T COG3937 20 AETAEKVQKLVDELVKKGELNAEEAKRFVDDLLRQAK 56 (108)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 3444334445555678899999999999999988765
No 159
>PF11132 SplA: Transcriptional regulator protein (SplA); InterPro: IPR022608 The SplA protein functions in trans as a negative regulator of the level of splB-lacZ expression in the developing forespore [].
Probab=31.88 E-value=37 Score=26.72 Aligned_cols=17 Identities=35% Similarity=0.362 Sum_probs=15.4
Q ss_pred ccccCCCeEEEeecCCH
Q 008647 190 ITYETGDHVGVYVENCD 206 (558)
Q Consensus 190 ~~y~~GD~l~i~p~N~~ 206 (558)
-.|++||.+.|+.+|+.
T Consensus 4 ~~~~~GD~VyViYrNPH 20 (75)
T PF11132_consen 4 KPYHAGDIVYVIYRNPH 20 (75)
T ss_pred cccCCCCEEEEEEcCCC
Confidence 36999999999999996
No 160
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=31.47 E-value=1.1e+02 Score=29.86 Aligned_cols=40 Identities=23% Similarity=0.191 Sum_probs=32.0
Q ss_pred eeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeec
Q 008647 159 CRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVE 203 (558)
Q Consensus 159 ~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~ 203 (558)
+.++|++.+.++. ++++|+|+.++....|+||.++.|..+
T Consensus 18 ~~~~v~~i~~~~~-----~~~~i~l~~~~~~~~~~pGQ~i~l~~~ 57 (243)
T cd06216 18 LRARVVAVRPETA-----DMVTLTLRPNRGWPGHRAGQHVRLGVE 57 (243)
T ss_pred eEEEEEEEEEcCC-----CcEEEEEecCCCCCCcCCCceEEEEEE
Confidence 4688988888874 688999987654468999999999854
No 161
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=31.07 E-value=1.2e+02 Score=23.25 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=20.6
Q ss_pred HHccCCCHHHHHHHHHHHHHCCCeEE
Q 008647 530 QEQENVDSSKAESIVKKFQMEGRYLR 555 (558)
Q Consensus 530 ~~~~~~~~~~a~~~~~~l~~~~Ry~~ 555 (558)
++.-+++..+|+.||..|+++|+...
T Consensus 22 A~~~gls~~~aR~yL~~Le~eG~V~~ 47 (62)
T PF04703_consen 22 ADALGLSIYQARYYLEKLEKEGKVER 47 (62)
T ss_dssp HHHHTS-HHHHHHHHHHHHHCTSEEE
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 34457888999999999999998754
No 162
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=30.72 E-value=85 Score=30.46 Aligned_cols=30 Identities=43% Similarity=0.712 Sum_probs=25.2
Q ss_pred CCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 39 LQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 39 l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
|.+++++|.|+|+ ++..+-+.|.+.|++.+
T Consensus 21 l~g~~vaIqGfGn--------VG~~~a~~L~~~G~~vV 50 (217)
T cd05211 21 LEGLTVAVQGLGN--------VGWGLAKKLAEEGGKVL 50 (217)
T ss_pred cCCCEEEEECCCH--------HHHHHHHHHHHcCCEEE
Confidence 8999999999996 46677778888898766
No 163
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=28.75 E-value=1.6e+02 Score=25.33 Aligned_cols=97 Identities=23% Similarity=0.345 Sum_probs=53.8
Q ss_pred CEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCC--Cccc
Q 008647 409 PIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS--QKEY 486 (558)
Q Consensus 409 plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~--~k~y 486 (558)
.++|+|=-|++--+.++|++.- ...+...+.-..+.+ |..+ |.. ....++.... |+.. ...-
T Consensus 3 ~~ll~gDeTalPAi~~iLe~lp-------~~~~~~v~iev~~~~-d~~~---l~~----~~~~~v~wv~-r~~~~~~~~~ 66 (119)
T PF04954_consen 3 RYLLVGDETALPAIARILEALP-------ADAPGTVFIEVPDEA-DRQP---LPA----PAGVEVTWVP-RDGPAAQGSA 66 (119)
T ss_dssp EEEEEEEGGGHHHHHHHHHHS--------TT-EEEEEEEESSGG-G--------------TEEEEEEEE--SS--TT-HH
T ss_pred eEEEEeccccHHHHHHHHHhCC-------CCCeEEEEEEECChH-hccc---CCC----CCCCEEEEEe-CCCCCchHHH
Confidence 5799999999988999998752 345677777777666 5332 222 3334455444 4432 1111
Q ss_pred hhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHH
Q 008647 487 VQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 527 (558)
Q Consensus 487 vq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~ 527 (558)
+.+.+.... .-..+..+|++|- ..+++.+++.|.+
T Consensus 67 l~~al~~~~-----~~~~~~~vW~AgE-~~~~r~lR~~l~~ 101 (119)
T PF04954_consen 67 LADALRDLP-----LPAGDGYVWVAGE-ASAVRALRRHLRE 101 (119)
T ss_dssp HHHHHTTS--------SS-EEEEEEEE-HHHHHHHHHHHHH
T ss_pred HHHHHHHhh-----ccCCCeEEEEEec-HHHHHHHHHHHHH
Confidence 222222111 0124679999999 7899888888874
No 164
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=28.67 E-value=99 Score=29.67 Aligned_cols=38 Identities=8% Similarity=0.268 Sum_probs=30.2
Q ss_pred EEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecC
Q 008647 161 VNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVEN 204 (558)
Q Consensus 161 ~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N 204 (558)
++|+..+.+++ ++++++|..++ ...|+||.++.|...+
T Consensus 1 ~~v~~~~~~t~-----~~~~l~l~~~~-~~~~~pGQ~v~l~~~~ 38 (224)
T cd06189 1 CKVESIEPLND-----DVYRVRLKPPA-PLDFLAGQYLDLLLDD 38 (224)
T ss_pred CEEEEEEeCCC-----ceEEEEEecCC-CcccCCCCEEEEEcCC
Confidence 35667777763 69999998775 6899999999999754
No 165
>KOG1518 consensus Coproporphyrinogen III oxidase CPO/HEM13 [Coenzyme transport and metabolism]
Probab=28.57 E-value=2.6e+02 Score=28.17 Aligned_cols=122 Identities=16% Similarity=0.271 Sum_probs=60.5
Q ss_pred CCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCC---
Q 008647 406 PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS--- 482 (558)
Q Consensus 406 ~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~--- 482 (558)
......++|||+-+||-.=+=+......+-... .|-.. |--|-..+..|..+ ++..-.|...
T Consensus 199 dg~kqWWFGGG~DlTPsyl~eeD~~hFH~~~K~--------AcD~h--dp~~YPrFKKWcDd-----YF~IkHR~E~RGi 263 (382)
T KOG1518|consen 199 DGVKQWWFGGGADLTPSYLFEEDGKHFHQLHKE--------ACDKH--DPTFYPRFKKWCDD-----YFYIKHRKERRGI 263 (382)
T ss_pred CCcEEEEecCCccCChhhhhhhhHHHHHHHHHH--------Hhhcc--CCccchhHHhhhhh-----heeeeeccccccc
Confidence 345789999999999976443332211000000 01111 33333567778764 3333344432
Q ss_pred CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEE
Q 008647 483 QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLR 555 (558)
Q Consensus 483 ~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~ 555 (558)
...+..|+-..+.+++...+.+-+. +|.-.-.-|..++.++.--+-++-++.|++ |||++
T Consensus 264 GGIFFDDld~~d~ee~f~fv~~Ca~------------avvPsYipiv~krkdmeft~~ek~wQ~lRR-GrYvE 323 (382)
T KOG1518|consen 264 GGIFFDDLDEPDPEELFSFVTDCAR------------AVVPSYIPIVEKRKDMEFTEQEKQWQQLRR-GRYVE 323 (382)
T ss_pred cceecccCCCCCHHHHHHHHHHHHH------------hhccccchhhhhhcCCCcChhHHHHHHHhc-cceEE
Confidence 1233344433344454443332111 111122345556666655556677777766 99986
No 166
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=28.24 E-value=4.2e+02 Score=24.78 Aligned_cols=102 Identities=10% Similarity=-0.025 Sum_probs=59.7
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCC----CCCCCCCceE-EEEeecCc--Cc-----hHHHHHHHHHHHHHH
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGND----RGPWLQQLKF-GVFGLGNR--QY-----EHFNKIGIVLDEELC 69 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~----~~~~l~~~~~-avfGlGds--~y-----~~f~~~~~~l~~~l~ 69 (558)
..+.+||..+-| ...+|.-.+.+.+....... ....|.|+++ .++-.|.. .| ..|...-.-+...+.
T Consensus 55 ~aD~iV~~fP~~-w~~~Pa~lK~wiD~V~~~g~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~~~~~ 133 (176)
T PRK00871 55 RADLIVWQHPMQ-WYSIPPLLKLWIDKVLSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAL 133 (176)
T ss_pred hCCEEEEEcChh-hccccHHHHHHHHHHhhCCccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHHHHHH
Confidence 468899999999 67789999998887754221 1234888876 45556665 33 223333444555666
Q ss_pred hCCCeEeecCcccCCCCCchhHHHHHHHHHHHHHH
Q 008647 70 KQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELD 104 (558)
Q Consensus 70 ~lGa~~i~~~~~~d~~~~~~~~~~~W~~~l~~~l~ 104 (558)
-+|.+.+-+..........+.++++.+++..+.|.
T Consensus 134 ~~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 168 (176)
T PRK00871 134 YCGLNWLPPFAMHCTFICDDETLEGQARHYKQRLL 168 (176)
T ss_pred HcCCeEcceEEEeeeccCCHHHHHHHHHHHHHHHH
Confidence 78988664443222222234444444444444443
No 167
>PRK08051 fre FMN reductase; Validated
Probab=28.23 E-value=1.3e+02 Score=29.20 Aligned_cols=38 Identities=8% Similarity=0.174 Sum_probs=31.1
Q ss_pred eeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEee
Q 008647 159 CRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYV 202 (558)
Q Consensus 159 ~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p 202 (558)
+.++|++.+.+++ ++++|.|..++ ...|+||.++.|..
T Consensus 3 ~~~~v~~i~~~~~-----~~~~l~l~~~~-~~~~~pGQ~v~l~~ 40 (232)
T PRK08051 3 LSCKVTSVEAITD-----TVYRVRLVPEA-PFSFRAGQYLMVVM 40 (232)
T ss_pred eEEEEEEEecCCC-----CeEEEEEecCC-CCccCCCCEEEEEc
Confidence 4688888888873 68899998654 68999999999985
No 168
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=27.42 E-value=47 Score=30.72 Aligned_cols=74 Identities=19% Similarity=0.067 Sum_probs=47.9
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCc-----hHHHHHHHHHHHHHHhCCCeEe
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-----EHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y-----~~f~~~~~~l~~~l~~lGa~~i 76 (558)
+|+..+|..+|- .|.+|..++.||+.--.+ ..+..|.|+-.++|=.+-+.= .-.++. ..|.-.|- .+
T Consensus 69 e~D~flFG~PTR-fG~~~AQ~kaF~D~TggL-W~~~aL~GK~AG~F~Stgs~gGgqE~talta~-----t~LvHHGm-if 140 (203)
T KOG3135|consen 69 EYDGFLFGFPTR-FGNMPAQWKAFWDSTGGL-WAKGALAGKPAGIFVSTGSQGGGQETTALTAI-----TQLVHHGM-IF 140 (203)
T ss_pred hccceeeccccc-ccCcHHHHHHHHhccCch-hhhccccCCceeEEEeccCCCCchHhHHHHHH-----HHHHhcce-EE
Confidence 578899999998 899999999999973221 223458999999985444311 223333 23333553 55
Q ss_pred ecCcccC
Q 008647 77 VPLGLGD 83 (558)
Q Consensus 77 ~~~~~~d 83 (558)
+|+|+-+
T Consensus 141 VPlGYkn 147 (203)
T KOG3135|consen 141 VPLGYKN 147 (203)
T ss_pred Eecccch
Confidence 6777653
No 169
>PF03445 DUF294: Putative nucleotidyltransferase DUF294; InterPro: IPR005105 This domain is found associated with an N-terminal cyclic nucleotide-binding domain (IPR000595 from INTERPRO) and two CBS domains (IPR000644 from INTERPRO). This domain, normally represents the C-terminal region, is uncharacterised; however, it seems to be similar to the nucleotidyltransferase domain (IPR002934 from INTERPRO), conserving the DXD motif, which strongly suggests that proteins containing this domain are also nucleotidyltransferases.; GO: 0008773 [protein-PII] uridylyltransferase activity
Probab=26.98 E-value=1.8e+02 Score=25.92 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=42.7
Q ss_pred CceEEEEeecCc------------------------CchHHHHHHHHHHHHHHhCCCeEeecCcccCCCC---CchhHHH
Q 008647 41 QLKFGVFGLGNR------------------------QYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ---CIEDDFT 93 (558)
Q Consensus 41 ~~~~avfGlGds------------------------~y~~f~~~~~~l~~~l~~lGa~~i~~~~~~d~~~---~~~~~~~ 93 (558)
...||.+.+|+- .-+.|-.+++.+...|.++| ++.+.|+-+. ..-....
T Consensus 47 p~~~a~lalGS~GR~E~~~~sDqD~alv~~d~~~~~~~~~f~~~a~~~~~~L~~~G----~~~C~g~vmasnp~W~~s~~ 122 (138)
T PF03445_consen 47 PVPFAWLALGSYGRREQTLYSDQDNALVFEDEESEEDRAYFEAFAERLVDALDECG----FPPCPGGVMASNPRWRGSLS 122 (138)
T ss_pred CCCEEEEEECcccccCCCcCccccceeeecCccchhHHHHHHHHHHHHHHHHHHcC----CCCCCCCcCccChhhCcCHH
Confidence 567888888765 12579999999999999999 4777777655 2456677
Q ss_pred HHHHHHHHHH
Q 008647 94 AWRELVWPEL 103 (558)
Q Consensus 94 ~W~~~l~~~l 103 (558)
.|.+.+-..+
T Consensus 123 ~W~~~~~~w~ 132 (138)
T PF03445_consen 123 EWREQLRRWI 132 (138)
T ss_pred HHHHHHHHHH
Confidence 8876654443
No 170
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=26.68 E-value=1.3e+02 Score=30.99 Aligned_cols=42 Identities=12% Similarity=0.266 Sum_probs=33.8
Q ss_pred ceeEEEEeeeecCCCCCCCcEEEEEEEecC-CCccccCCCeEEEeecC
Q 008647 158 PCRVNVAVRRELHKPDSDRSCIHLEFDVSG-TGITYETGDHVGVYVEN 204 (558)
Q Consensus 158 ~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~-~~~~y~~GD~l~i~p~N 204 (558)
.+.++|++.+.++. +++.++|+.++ ..+.|+||.++.|..++
T Consensus 102 ~~~~~V~~~~~~~~-----d~~~l~l~~~~~~~~~~~pGQfv~l~~~~ 144 (339)
T PRK07609 102 KLPCRVASLERVAG-----DVMRLKLRLPATERLQYLAGQYIEFILKD 144 (339)
T ss_pred EEEEEEEEEEcCCC-----cEEEEEEEcCCCCCCccCCCCeEEEECCC
Confidence 35689999998874 68999998864 35799999999998764
No 171
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=25.66 E-value=45 Score=30.58 Aligned_cols=50 Identities=20% Similarity=0.225 Sum_probs=35.0
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCc
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY 54 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y 54 (558)
-+.++|+++.|..| -|.--+.-.+||... ....+.--+.|+=+|=|+++|
T Consensus 87 aD~ivFvtPqYN~g-ypA~LKNAlD~lyhe-W~gKPalivSyGGhGGg~c~~ 136 (199)
T KOG4530|consen 87 ADSIVFVTPQYNFG-YPAPLKNALDWLYHE-WAGKPALIVSYGGHGGGRCQY 136 (199)
T ss_pred cceEEEecccccCC-CchHHHHHHHHhhhh-hcCCceEEEEecCCCCchHHH
Confidence 46899999999655 566566666777653 222335557888888888887
No 172
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=25.24 E-value=1e+02 Score=29.37 Aligned_cols=31 Identities=32% Similarity=0.501 Sum_probs=26.6
Q ss_pred CCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 38 WLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 38 ~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
.+++++++|.|+|. +++.+-+.|.+.|++-+
T Consensus 25 ~l~gk~v~I~G~G~--------vG~~~A~~L~~~G~~Vv 55 (200)
T cd01075 25 SLEGKTVAVQGLGK--------VGYKLAEHLLEEGAKLI 55 (200)
T ss_pred CCCCCEEEEECCCH--------HHHHHHHHHHHCCCEEE
Confidence 38999999999994 67888899999999655
No 173
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=24.57 E-value=1.7e+02 Score=28.16 Aligned_cols=40 Identities=8% Similarity=0.269 Sum_probs=31.7
Q ss_pred eEEEEeeeecCCCCCCCcEEEEEEEecCC-----CccccCCCeEEEeecC
Q 008647 160 RVNVAVRRELHKPDSDRSCIHLEFDVSGT-----GITYETGDHVGVYVEN 204 (558)
Q Consensus 160 ~~~v~~~~~l~~~~~~~~~~~i~l~~~~~-----~~~y~~GD~l~i~p~N 204 (558)
.++|++.+.+++ +++.+.|+.++. ...|+||.++.|..+.
T Consensus 3 ~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~ 47 (236)
T cd06210 3 EAEIVAVDRVSS-----NVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPG 47 (236)
T ss_pred eEEEEEEeecCC-----ceEEEEEEeCCcccccccCCcCCCCEEEEEcCC
Confidence 578888888874 688999987653 3789999999997653
No 174
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=24.34 E-value=1e+02 Score=33.33 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=41.7
Q ss_pred CcEEEEEeccCCCCCCCc--cHHHHHHH-HhcCCCC-CCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCe
Q 008647 3 HSIYLRLTCRYGDGEPTD--NAARFYKW-FTEGNDR-GPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGA 74 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~--n~~~f~~~-l~~~~~~-~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~ 74 (558)
++.||+.+--++.+-.|+ -...|--. +.....+ ...+.|++++|+|-|+| |-.+-..|.+.||+
T Consensus 133 a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaS--------A~di~~~l~~~ga~ 200 (443)
T COG2072 133 ADFVVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGAS--------AVDIAPELAEVGAS 200 (443)
T ss_pred cCEEEEeecCCCCCCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCcc--------HHHHHHHHHhcCCe
Confidence 678888888888888787 11122211 1111111 24599999999999999 55666677777753
No 175
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=23.77 E-value=1.6e+02 Score=28.13 Aligned_cols=37 Identities=11% Similarity=0.203 Sum_probs=29.0
Q ss_pred EEEeeeecCCCCCCCcEEEEEEEecCCC-ccccCCCeEEEeec
Q 008647 162 NVAVRRELHKPDSDRSCIHLEFDVSGTG-ITYETGDHVGVYVE 203 (558)
Q Consensus 162 ~v~~~~~l~~~~~~~~~~~i~l~~~~~~-~~y~~GD~l~i~p~ 203 (558)
+|++.+.++. ++++++|+.++.. ..|+||.++.|.-+
T Consensus 2 ~v~~~~~~t~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~ 39 (231)
T cd06215 2 RCVKIIQETP-----DVKTFRFAAPDGSLFAYKPGQFLTLELE 39 (231)
T ss_pred eEEEEEEcCC-----CeEEEEEECCCCCcCCcCCCCeEEEEEe
Confidence 5677777764 6889999987533 78999999999754
No 176
>PF02789 Peptidase_M17_N: Cytosol aminopeptidase family, N-terminal domain; InterPro: IPR008283 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The two zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3PEI_A 1GYT_C 3JRU_A 3H8F_D 3H8G_F 3H8E_A 3KZW_L 1LAP_A 1LAN_A 1LCP_B ....
Probab=23.77 E-value=1.6e+02 Score=25.19 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=30.9
Q ss_pred CceEEEEeecCcC---chHHHHHHHHHHHHHHhCCCeEee
Q 008647 41 QLKFGVFGLGNRQ---YEHFNKIGIVLDEELCKQGGARLV 77 (558)
Q Consensus 41 ~~~~avfGlGds~---y~~f~~~~~~l~~~l~~lGa~~i~ 77 (558)
-.++.++|||+.. ...+-.++-.+-+.+.+.+...+.
T Consensus 52 ~~~v~lvGlG~~~~~~~~~~r~a~~~~~~~l~~~~~~~v~ 91 (126)
T PF02789_consen 52 AKRVLLVGLGKKEKLTAESLRKAGAAAARALKKLKVKSVA 91 (126)
T ss_dssp CSEEEEEEEESCTGBCHHHHHHHHHHHHHHHHHTT-SEEE
T ss_pred ccEEEEEECCCcCcCCHHHHHHHHHHHHHHHhhCCceEEE
Confidence 4699999999994 488999999999999998887663
No 177
>COG4071 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.00 E-value=1.7e+02 Score=28.16 Aligned_cols=115 Identities=19% Similarity=0.232 Sum_probs=61.4
Q ss_pred ccccCCCeEEEeecCCHHHH----HHHHHHhCCCCccEEEEecCCCCCCCCC---CCCCCCCCCccc----HHHHHhhhc
Q 008647 190 ITYETGDHVGVYVENCDETV----EEAGKLLGQSLELLFSLHTDNEDGTPRG---SSLTPPFPGPCT----LRTALARYA 258 (558)
Q Consensus 190 ~~y~~GD~l~i~p~N~~~~V----~~~l~~l~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~t----l~~ll~~~~ 258 (558)
++=-||-..+-+|+|+.... .++.+++|.|-.. .+-..+.+...++ ...+...|..+| +.-++-+..
T Consensus 127 l~NVPGtya~plPenp~~vA~el~~Ei~rr~GvDV~v--~v~DTDaTY~iLg~yFT~lp~a~pgI~sgtGv~Gfl~GRl~ 204 (278)
T COG4071 127 LTNVPGTYACPLPENPKKVAEELYKEIKRRLGVDVVV--MVADTDATYRILGFYFTALPYAIPGIISGTGVFGFLLGRLA 204 (278)
T ss_pred ccCCCcceeccCCCChHHHHHHHHHHHHHHhCCceEE--EEecCchHHHHHHHHHhhccccCCCeecccchHHHHHHHhh
Confidence 34459999999999998554 4556788876321 1111111111111 112333343333 567788888
Q ss_pred cccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHHHhCC
Q 008647 259 DILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFP 316 (558)
Q Consensus 259 Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~ 316 (558)
|-+-.|++-- - +. +..++.+.++.+ ...-.+-....+.|++|+|++|.
T Consensus 205 ~~t~~pTPlA-----i-ag-~V~~~~~iel~~---~Ae~~~r~~~~r~tvyd~lee~~ 252 (278)
T COG4071 205 DVTKIPTPLA-----I-AG-EVYKKYSIELTR---IAEICDRVHKTRKTVYDVLEEYS 252 (278)
T ss_pred ccccCCCcce-----e-cc-chhHHHHHHHHH---HHHHHHhhCcchhhHHHHHHHhC
Confidence 8887777621 1 11 223333334422 11122333444569999999995
No 178
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=22.81 E-value=1.1e+02 Score=30.00 Aligned_cols=39 Identities=10% Similarity=0.070 Sum_probs=30.6
Q ss_pred ceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeec
Q 008647 158 PCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVE 203 (558)
Q Consensus 158 ~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~ 203 (558)
++.++|++.+.++. +++.++|+.+. ..|+||.++.|..+
T Consensus 4 ~~~~~V~~i~~~t~-----~v~~l~l~~~~--~~~~pGQfv~l~~~ 42 (248)
T PRK10926 4 WVTGKVTKVQNWTD-----ALFSLTVHAPV--DPFTAGQFTKLGLE 42 (248)
T ss_pred cEEEEEEEEEEcCC-----CeEEEEEeCCC--CCCCCCCEEEEEEe
Confidence 35789999998874 68889888652 47999999988754
No 179
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=22.79 E-value=1.2e+02 Score=25.23 Aligned_cols=52 Identities=23% Similarity=0.213 Sum_probs=42.0
Q ss_pred CCceEEEEeecCc---CchHHHHHHHHHHHHHHhCCCeEeecCcccCCCCCchhH
Q 008647 40 QQLKFGVFGLGNR---QYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDD 91 (558)
Q Consensus 40 ~~~~~avfGlGds---~y~~f~~~~~~l~~~l~~lGa~~i~~~~~~d~~~~~~~~ 91 (558)
+|++|-+-.+|=. .|+.-..+.+++.+.+.+.||.|++-..+.|+..+-+..
T Consensus 29 sgl~y~v~pm~T~iEGe~dev~~~i~~~~e~~~~~G~~Rv~t~ikId~R~d~~~t 83 (92)
T PF01910_consen 29 SGLKYEVGPMGTTIEGELDEVMALIKEAHEALFEAGAKRVVTVIKIDDRRDKELT 83 (92)
T ss_dssp SSSEEEEETTEEEEEEEHHHHHHHHHHHHHHHHCTTSSEEEEEEEEEEESSSTTS
T ss_pred cCCceEEcCCccEEEecHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEEcCCCCCC
Confidence 4678888877655 478889999999999999999999999999876543333
No 180
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=22.69 E-value=1.1e+02 Score=28.33 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=26.5
Q ss_pred CCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 37 PWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 37 ~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
..+.+.+++|+|+|+ .++.+-++|+.+|++-+
T Consensus 32 ~~l~g~tvgIiG~G~--------IG~~vA~~l~~fG~~V~ 63 (178)
T PF02826_consen 32 RELRGKTVGIIGYGR--------IGRAVARRLKAFGMRVI 63 (178)
T ss_dssp S-STTSEEEEESTSH--------HHHHHHHHHHHTT-EEE
T ss_pred cccCCCEEEEEEEcC--------CcCeEeeeeecCCceeE
Confidence 458999999999996 49999999999999654
No 181
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=22.06 E-value=1.4e+02 Score=29.98 Aligned_cols=42 Identities=5% Similarity=0.059 Sum_probs=33.7
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 008647 507 YLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQ 548 (558)
Q Consensus 507 ~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~ 548 (558)
..=++|+.|++.-.+.++|.+...+.+|++.++|.+++.++.
T Consensus 168 ~tal~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~~~~~ 209 (277)
T PRK06928 168 ASNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFLNFAL 209 (277)
T ss_pred eeeeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344555556799999999999998888899999999887654
No 182
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=22.00 E-value=1.1e+02 Score=32.66 Aligned_cols=41 Identities=7% Similarity=0.159 Sum_probs=33.5
Q ss_pred eeEEEEeeeecCCCCCCCcEEEEEEEecC-CCccccCCCeEEEeecC
Q 008647 159 CRVNVAVRRELHKPDSDRSCIHLEFDVSG-TGITYETGDHVGVYVEN 204 (558)
Q Consensus 159 ~~~~v~~~~~l~~~~~~~~~~~i~l~~~~-~~~~y~~GD~l~i~p~N 204 (558)
+.++|++++.+++ +++.+.|..++ ..+.|+||.++.|..++
T Consensus 134 ~~~~V~~~~~ls~-----~i~~l~l~~~~~~~~~~~pGQ~v~l~~~~ 175 (409)
T PRK05464 134 WECTVISNDNVAT-----FIKELVLKIPEGEEVPFRAGGYIQIEAPP 175 (409)
T ss_pred EEEEEEEcccCCc-----hhheEEEecCCCCcccccCCceEEEEccc
Confidence 6789999999985 68888888874 35799999999998653
No 183
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=21.79 E-value=1.1e+02 Score=29.96 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=23.5
Q ss_pred cEEEEEEEecCCCccccCCCeEEEeecC
Q 008647 177 SCIHLEFDVSGTGITYETGDHVGVYVEN 204 (558)
Q Consensus 177 ~~~~i~l~~~~~~~~y~~GD~l~i~p~N 204 (558)
++++|+|+.++....|+||+++.|..++
T Consensus 10 ~v~~l~l~~~~~~~~~~pGQ~v~l~~~~ 37 (246)
T cd06218 10 DIYRLVLEAPEIAAAAKPGQFVMLRVPD 37 (246)
T ss_pred CeEEEEEeCcchhccCCCCcEEEEEeCC
Confidence 7899999877545789999999998765
No 184
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=20.69 E-value=64 Score=28.45 Aligned_cols=51 Identities=18% Similarity=0.211 Sum_probs=32.9
Q ss_pred EEeecCcCch---HHHHHHHHHHHHHHhCCCeEeecCcccCCCCCchhHHHHHH
Q 008647 46 VFGLGNRQYE---HFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWR 96 (558)
Q Consensus 46 vfGlGds~y~---~f~~~~~~l~~~l~~lGa~~i~~~~~~d~~~~~~~~~~~W~ 96 (558)
|+-.||.-.. .++..+..+.++|++.|++........|+.......+..|.
T Consensus 2 vi~~GdEi~~~~~~~d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~ 55 (135)
T smart00852 2 IISTGDELLSGGQIYDSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREAL 55 (135)
T ss_pred EEEEechhhcCCCcccCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHH
Confidence 5566776542 26777888999999999976544444455544455555553
No 185
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=20.67 E-value=1.5e+02 Score=28.19 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=23.4
Q ss_pred cEEEEEEEecCCCccccCCCeEEEeecCC
Q 008647 177 SCIHLEFDVSGTGITYETGDHVGVYVENC 205 (558)
Q Consensus 177 ~~~~i~l~~~~~~~~y~~GD~l~i~p~N~ 205 (558)
++++++|..++ ...|+||.++.|..++.
T Consensus 10 ~~~~~~l~~~~-~~~~~pGq~i~l~~~~~ 37 (224)
T cd06187 10 DIAVVRLQLDQ-PLPFWAGQYVNVTVPGR 37 (224)
T ss_pred CEEEEEEEeCC-CCCcCCCceEEEEcCCC
Confidence 68999999876 48899999999986543
No 186
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=20.64 E-value=1.9e+02 Score=27.70 Aligned_cols=38 Identities=24% Similarity=0.366 Sum_probs=28.1
Q ss_pred EEEeeeecCCCCCCCcEEEEEEEecCCC-ccccCCCeEEEeecC
Q 008647 162 NVAVRRELHKPDSDRSCIHLEFDVSGTG-ITYETGDHVGVYVEN 204 (558)
Q Consensus 162 ~v~~~~~l~~~~~~~~~~~i~l~~~~~~-~~y~~GD~l~i~p~N 204 (558)
+|++.+.+++ ++++++|+.++.. ..|+||.++.|...+
T Consensus 2 ~v~~i~~~t~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 40 (231)
T cd06191 2 RVAEVRSETP-----DAVTIVFAVPGPLQYGFRPGQHVTLKLDF 40 (231)
T ss_pred EEEEEEecCC-----CcEEEEEeCCCCCCCCCCCCCeEEEEEec
Confidence 4556666663 6889999877543 589999999997653
No 187
>PRK04148 hypothetical protein; Provisional
Probab=20.26 E-value=2e+02 Score=25.74 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCC
Q 008647 23 ARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGG 73 (558)
Q Consensus 23 ~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa 73 (558)
+.+.+||.+.-.. .++.++.++|+| +. ..+...|.++|.
T Consensus 2 ~~i~~~l~~~~~~---~~~~kileIG~G-fG--------~~vA~~L~~~G~ 40 (134)
T PRK04148 2 DTIAEFIAENYEK---GKNKKIVELGIG-FY--------FKVAKKLKESGF 40 (134)
T ss_pred hHHHHHHHHhccc---ccCCEEEEEEec-CC--------HHHHHHHHHCCC
Confidence 4577777664322 356899999999 32 233456667885
No 188
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=20.19 E-value=1.2e+02 Score=31.60 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=20.9
Q ss_pred CCEEEEccCcc--ccchHHHHHHHHH
Q 008647 408 VPIIMVGPGTG--LAPFRGFLQERMA 431 (558)
Q Consensus 408 ~plilIa~GtG--IAP~~s~l~~~~~ 431 (558)
+.+++.||||| |-|-+++.+++..
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHh
Confidence 35899999999 9999999988764
Done!