Query 008647
Match_columns 558
No_of_seqs 370 out of 2807
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 08:27:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008647.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008647hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe2_A CPR, P450R, NADPH--cyto 100.0 4E-104 1E-108 878.5 60.6 535 2-558 70-617 (618)
2 2bpo_A CPR, P450R, NADPH-cytoc 100.0 2.9E-98 1E-102 840.0 50.8 536 2-558 97-682 (682)
3 1tll_A Nitric-oxide synthase, 100.0 2.9E-95 1E-99 815.8 51.2 537 3-558 58-654 (688)
4 3qfs_A CPR, P450R, NADPH--cyto 100.0 1E-83 3.5E-88 687.3 49.2 429 123-558 22-457 (458)
5 2qtl_A MSR;, methionine syntha 100.0 3.9E-79 1.3E-83 665.6 47.8 402 149-558 105-538 (539)
6 4dql_A Bifunctional P-450/NADP 100.0 3.8E-78 1.3E-82 635.9 41.8 383 157-558 5-391 (393)
7 1f20_A Nitric-oxide synthase; 100.0 4.8E-76 1.6E-80 628.6 42.1 396 152-558 24-433 (435)
8 1ddg_A Sulfite reductase (NADP 100.0 9.2E-75 3.2E-79 607.2 41.4 368 151-558 4-374 (374)
9 2bmw_A Ferredoxin--NADP reduct 100.0 9.4E-39 3.2E-43 326.2 29.1 274 152-558 15-304 (304)
10 1fnb_A Ferredoxin-NADP+ reduct 100.0 5.9E-39 2E-43 329.2 27.7 273 152-558 31-314 (314)
11 3vo2_A Putative uncharacterize 100.0 1E-38 3.4E-43 326.9 28.4 273 152-558 27-310 (310)
12 2b5o_A FNR, ferredoxin--NADP r 100.0 3.4E-37 1.2E-41 326.2 28.1 274 153-558 117-402 (402)
13 2rc5_A Ferredoxin-NADP reducta 100.0 3.1E-36 1.1E-40 308.9 27.7 278 153-558 16-314 (314)
14 3lo8_A Ferredoxin--NADP reduct 100.0 5.9E-36 2E-40 306.5 28.6 274 153-558 23-311 (311)
15 3jqq_A Ferredoxin NADP reducta 100.0 2.3E-35 7.9E-40 302.6 24.9 291 152-558 9-316 (316)
16 1tvc_A Methane monooxygenase c 100.0 6.3E-28 2.2E-32 239.0 15.2 185 319-529 43-233 (250)
17 1qfj_A Protein (flavin reducta 99.9 1.2E-27 4.2E-32 234.1 11.8 182 319-528 29-217 (232)
18 2r6h_A NADH:ubiquinone oxidore 99.9 2.7E-27 9.3E-32 239.5 13.4 182 333-529 84-278 (290)
19 2eix_A NADH-cytochrome B5 redu 99.9 3.1E-27 1.1E-31 232.9 11.3 184 319-529 41-234 (243)
20 1fdr_A Flavodoxin reductase; f 99.9 9.4E-27 3.2E-31 230.1 12.6 189 319-530 30-231 (248)
21 1krh_A Benzoate 1,2-dioxygenas 99.9 1.9E-26 6.5E-31 238.5 14.1 182 319-529 138-324 (338)
22 1umk_A B5R, NADH-cytochrome B5 99.9 4.5E-27 1.5E-31 236.1 8.7 196 319-529 46-266 (275)
23 4eh1_A Flavohemoprotein; struc 99.9 1.8E-26 6.3E-31 227.2 12.9 184 319-530 33-225 (243)
24 1gvh_A Flavohemoprotein; oxido 99.9 4.1E-26 1.4E-30 241.2 14.2 182 319-529 182-379 (396)
25 4fk8_A Ferredoxin--NADP reduct 99.9 2.4E-27 8.2E-32 237.6 4.3 204 319-558 46-268 (271)
26 4g1v_A Flavohemoglobin; three 99.9 1.5E-25 5E-30 237.2 15.8 185 319-529 183-379 (399)
27 2bgi_A Ferredoxin-NADP(H) redu 99.9 5.9E-26 2E-30 227.7 10.2 188 319-529 43-249 (272)
28 1ep3_B Dihydroorotate dehydrog 99.9 5.9E-26 2E-30 226.5 9.4 173 319-528 33-212 (262)
29 1cqx_A Flavohemoprotein; globi 99.9 3.8E-25 1.3E-29 234.3 14.4 190 319-529 184-385 (403)
30 2cnd_A NADH-dependent nitrate 99.9 5.7E-26 1.9E-30 227.4 6.8 191 319-527 42-258 (270)
31 2qdx_A Ferredoxin reductase; o 99.9 4.8E-26 1.6E-30 226.4 6.2 188 319-529 30-235 (257)
32 2pia_A Phthalate dioxygenase r 99.9 4.9E-25 1.7E-29 226.3 9.5 174 319-527 38-214 (321)
33 3hr4_A Nitric oxide synthase, 99.9 1.3E-24 4.3E-29 208.8 10.9 107 2-111 86-192 (219)
34 2gpj_A Siderophore-interacting 99.8 1.2E-20 4E-25 187.0 5.8 169 320-529 39-215 (252)
35 3lrx_A Putative hydrogenase; a 99.7 8.4E-19 2.9E-23 161.1 6.3 128 379-530 1-137 (158)
36 1bvy_F Protein (cytochrome P45 99.7 4.3E-18 1.5E-22 161.1 10.2 100 2-104 67-167 (191)
37 3lyu_A Putative hydrogenase; t 99.7 1E-17 3.5E-22 151.1 7.8 121 391-529 3-131 (142)
38 3a1f_A Cytochrome B-245 heavy 99.7 4.5E-18 1.5E-22 159.7 5.5 136 392-529 2-170 (186)
39 2hna_A Protein MIOC, flavodoxi 99.7 1.3E-17 4.6E-22 151.1 2.1 99 2-103 46-146 (147)
40 1ykg_A SIR-FP, sulfite reducta 99.7 1.8E-16 6.3E-21 146.8 8.8 103 2-108 56-158 (167)
41 3f6r_A Flavodoxin; FMN binding 99.5 2.3E-14 7.9E-19 129.6 5.9 96 2-102 49-147 (148)
42 1f4p_A Flavodoxin; electron tr 99.4 6.7E-13 2.3E-17 119.7 6.8 94 3-101 49-145 (147)
43 2wc1_A Flavodoxin; electron tr 99.3 1.1E-12 3.9E-17 122.8 8.2 101 2-107 47-180 (182)
44 1yob_A Flavodoxin 2, flavodoxi 99.3 1.5E-12 5.1E-17 121.8 8.8 98 2-104 46-176 (179)
45 2fcr_A Flavodoxin; electron tr 99.3 4.6E-12 1.6E-16 117.7 10.0 97 2-103 45-171 (173)
46 1ag9_A Flavodoxin; electron tr 99.3 3.2E-12 1.1E-16 119.0 6.9 99 2-105 45-169 (175)
47 2bmv_A Flavodoxin; electron tr 99.2 4.7E-12 1.6E-16 116.5 1.9 94 2-102 44-162 (164)
48 1obo_A Flavodoxin; electron tr 99.1 4.6E-11 1.6E-15 110.3 7.4 97 2-103 46-167 (169)
49 1czn_A Flavodoxin; FMN binding 99.1 4.1E-11 1.4E-15 110.6 6.5 97 2-103 46-167 (169)
50 2xod_A NRDI protein, NRDI; fla 99.1 2.3E-11 7.7E-16 105.8 4.4 85 2-100 32-117 (119)
51 1rlj_A NRDI protein; flavoprot 99.0 5.4E-10 1.8E-14 99.7 6.8 86 3-102 44-130 (139)
52 5nul_A Flavodoxin; electron tr 98.9 9.1E-09 3.1E-13 91.4 10.0 88 2-99 45-135 (138)
53 3n3a_C Protein NRDI; ribonucle 98.5 6.8E-08 2.3E-12 86.3 4.5 85 3-101 59-150 (153)
54 2fz5_A Flavodoxin; alpha/beta 98.4 7E-07 2.4E-11 78.6 8.0 88 2-99 46-134 (137)
55 3hly_A Flavodoxin-like domain; 98.3 8.8E-07 3E-11 80.9 7.0 92 2-105 51-144 (161)
56 3fni_A Putative diflavin flavo 98.3 4.9E-07 1.7E-11 82.4 4.9 92 2-105 56-149 (159)
57 1e5d_A Rubredoxin\:oxygen oxid 97.7 4.8E-05 1.6E-09 79.4 7.8 94 2-105 303-398 (402)
58 1ycg_A Nitric oxide reductase; 97.7 3.9E-05 1.3E-09 79.9 6.2 91 2-102 302-395 (398)
59 2ohh_A Type A flavoprotein FPR 97.2 0.00033 1.1E-08 73.0 6.4 94 2-103 307-402 (404)
60 2a5l_A Trp repressor binding p 97.1 0.0016 5.6E-08 60.7 9.2 75 2-78 71-145 (200)
61 2q9u_A A-type flavoprotein; fl 96.9 0.0016 5.5E-08 68.1 8.4 94 2-105 307-405 (414)
62 3klb_A Putative flavoprotein; 96.7 0.0048 1.7E-07 55.8 8.5 82 2-99 78-160 (162)
63 2ark_A Flavodoxin; FMN, struct 96.6 0.0099 3.4E-07 55.0 10.1 102 2-107 52-169 (188)
64 3d7n_A Flavodoxin, WRBA-like p 96.6 0.0046 1.6E-07 57.6 7.7 73 2-76 54-126 (193)
65 4ici_A Putative flavoprotein; 96.5 0.0079 2.7E-07 55.0 8.8 82 2-99 87-168 (171)
66 3b6i_A Flavoprotein WRBA; flav 96.2 0.0087 3E-07 55.5 7.4 73 2-77 68-140 (198)
67 2vzf_A NADH-dependent FMN redu 96.2 0.0047 1.6E-07 57.7 5.3 69 2-77 69-137 (197)
68 2zki_A 199AA long hypothetical 96.0 0.011 3.8E-07 54.9 7.0 75 2-78 70-144 (199)
69 4dik_A Flavoprotein; TM0755, e 95.6 0.015 5.1E-07 60.9 6.7 84 2-96 319-402 (410)
70 3gfs_A FMN-dependent NADPH-azo 95.5 0.017 5.8E-07 52.6 6.1 67 2-76 63-130 (174)
71 1t5b_A Acyl carrier protein ph 95.5 0.028 9.7E-07 52.0 7.7 102 2-105 86-197 (201)
72 1ydg_A Trp repressor binding p 95.5 0.028 9.7E-07 52.7 7.7 75 2-78 78-152 (211)
73 3edo_A Flavoprotein, putative 94.6 0.055 1.9E-06 48.0 6.5 75 2-96 76-150 (151)
74 1t0i_A YLR011WP; FMN binding p 94.1 0.12 4.1E-06 47.4 7.8 66 2-77 84-149 (191)
75 1rtt_A Conserved hypothetical 93.7 0.12 4.2E-06 47.6 7.1 72 2-77 72-143 (193)
76 3k1y_A Oxidoreductase; structu 93.6 0.18 6.1E-06 46.7 7.9 67 3-76 86-152 (191)
77 1sqs_A Conserved hypothetical 93.0 0.2 6.9E-06 48.0 7.6 100 2-105 79-179 (242)
78 4hs4_A Chromate reductase; tri 91.6 0.61 2.1E-05 43.3 8.8 70 3-76 74-143 (199)
79 2hpv_A FMN-dependent NADH-azor 91.0 0.91 3.1E-05 42.0 9.4 101 2-104 94-202 (208)
80 3lcm_A SMU.1420, putative oxid 90.7 0.56 1.9E-05 43.3 7.6 104 3-107 74-189 (196)
81 3fvw_A Putative NAD(P)H-depend 90.7 1.3 4.6E-05 40.6 10.1 73 2-77 67-144 (192)
82 1rli_A Trp repressor binding p 90.2 0.89 3E-05 41.0 8.3 75 2-77 71-152 (184)
83 2q62_A ARSH; alpha/beta, flavo 89.9 1.5 5.2E-05 42.1 10.1 71 3-76 99-169 (247)
84 3svl_A Protein YIEF; E. coli C 89.5 1.5 5.1E-05 40.4 9.3 70 3-76 73-142 (193)
85 3u7r_A NADPH-dependent FMN red 89.2 4.9 0.00017 36.8 12.6 72 2-76 67-138 (190)
86 3ha2_A NADPH-quinone reductase 88.1 2.7 9.2E-05 38.2 9.8 103 2-105 51-166 (177)
87 2fzv_A Putative arsenical resi 87.5 2.1 7E-05 42.0 9.2 71 3-76 124-194 (279)
88 3r6w_A FMN-dependent NADH-azor 87.5 1.8 6.2E-05 40.2 8.6 101 3-105 88-207 (212)
89 3s2y_A Chromate reductase; ura 86.5 0.13 4.6E-06 47.9 0.0 72 2-77 73-144 (199)
90 3rpe_A MDAB, modulator of drug 86.2 5 0.00017 37.7 10.8 103 2-107 83-216 (218)
91 2amj_A Modulator of drug activ 84.3 4.6 0.00016 37.3 9.6 75 3-78 71-176 (204)
92 3f2v_A General stress protein 84.3 7.7 0.00026 35.5 11.0 104 2-106 58-181 (192)
93 3p0r_A Azoreductase; structura 83.4 2.8 9.5E-05 39.1 7.7 101 3-105 93-206 (211)
94 3tem_A Ribosyldihydronicotinam 83.1 3.4 0.00012 39.0 8.3 106 2-108 92-215 (228)
95 3u7i_A FMN-dependent NADH-azor 80.5 6.9 0.00024 36.7 9.3 104 3-107 95-214 (223)
96 1d4a_A DT-diaphorase, quinone 79.4 7.2 0.00025 37.8 9.3 104 3-107 94-215 (273)
97 3l9w_A Glutathione-regulated p 70.9 22 0.00076 36.6 10.8 104 2-106 292-407 (413)
98 1mkz_A Molybdenum cofactor bio 55.0 15 0.0005 32.9 5.2 58 38-95 7-64 (172)
99 3pzy_A MOG; ssgcid, seattle st 40.7 11 0.00039 33.5 1.9 57 39-96 5-63 (164)
100 2r6h_A NADH:ubiquinone oxidore 40.5 48 0.0016 31.7 6.7 41 159-204 10-51 (290)
101 1tvc_A Methane monooxygenase c 39.9 27 0.00093 32.7 4.7 45 155-204 7-56 (250)
102 2pjk_A 178AA long hypothetical 35.8 12 0.00041 33.8 1.3 57 39-95 13-76 (178)
103 1umk_A B5R, NADH-cytochrome B5 34.4 77 0.0026 29.9 7.0 43 156-203 14-58 (275)
104 1ep3_B Dihydroorotate dehydrog 34.4 42 0.0014 31.7 5.1 41 160-205 7-47 (262)
105 1qfj_A Protein (flavin reducta 34.1 62 0.0021 29.7 6.1 40 159-204 3-42 (232)
106 1krh_A Benzoate 1,2-dioxygenas 33.7 66 0.0023 31.6 6.6 42 158-204 108-151 (338)
107 2cnd_A NADH-dependent nitrate 33.1 69 0.0023 30.1 6.4 42 157-203 11-54 (270)
108 2xpn_B SPT6, chromatin structu 32.3 19 0.00065 21.0 1.3 12 41-52 3-14 (26)
109 3s2u_A UDP-N-acetylglucosamine 32.1 30 0.001 34.6 3.8 24 408-431 3-28 (365)
110 2bgi_A Ferredoxin-NADP(H) redu 30.9 72 0.0025 30.2 6.2 42 157-204 15-56 (272)
111 1y5e_A Molybdenum cofactor bio 29.5 31 0.0011 30.6 2.9 57 39-95 11-67 (169)
112 2eix_A NADH-cytochrome B5 redu 29.3 99 0.0034 28.4 6.7 41 158-203 11-53 (243)
113 2pia_A Phthalate dioxygenase r 29.0 91 0.0031 30.4 6.7 42 158-204 8-51 (321)
114 4gi5_A Quinone reductase; prot 28.8 2.1E+02 0.0073 27.5 9.1 105 3-108 113-243 (280)
115 4eh1_A Flavohemoprotein; struc 27.4 1.2E+02 0.004 27.9 6.8 41 160-205 5-47 (243)
116 2qdx_A Ferredoxin reductase; o 27.3 1E+02 0.0035 28.7 6.4 40 159-204 4-43 (257)
117 3t4e_A Quinate/shikimate dehyd 26.8 97 0.0033 30.4 6.3 45 21-76 131-175 (312)
118 1di6_A MOGA, molybdenum cofact 26.7 28 0.00095 31.9 2.1 55 41-95 3-61 (195)
119 3kbq_A Protein TA0487; structu 26.6 24 0.00081 31.7 1.6 55 42-96 4-60 (172)
120 1lxj_A YBL001C, hypothetical 1 26.4 88 0.003 25.4 4.9 77 17-101 21-100 (104)
121 4fk8_A Ferredoxin--NADP reduct 25.1 90 0.0031 29.4 5.6 39 159-203 20-58 (271)
122 3rfq_A Pterin-4-alpha-carbinol 23.9 20 0.00067 32.6 0.5 57 38-95 27-85 (185)
123 3iwt_A 178AA long hypothetical 22.7 38 0.0013 30.1 2.3 57 39-95 13-76 (178)
124 3tnl_A Shikimate dehydrogenase 21.9 1.4E+02 0.0047 29.3 6.3 45 21-76 137-181 (315)
125 1gvh_A Flavohemoprotein; oxido 21.7 1.5E+02 0.0051 29.7 6.8 40 159-203 153-194 (396)
126 1jlj_A Gephyrin; globular alph 21.6 32 0.0011 31.2 1.5 58 39-96 12-74 (189)
127 1yqh_A DUF77, IG hypothetical 20.9 1.8E+02 0.006 23.8 5.7 67 18-92 23-92 (109)
128 2is8_A Molybdopterin biosynthe 20.8 19 0.00064 31.9 -0.3 54 42-95 2-57 (164)
129 3pwz_A Shikimate dehydrogenase 20.2 1.7E+02 0.0059 27.9 6.5 49 16-76 98-147 (272)
No 1
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=100.00 E-value=3.9e-104 Score=878.48 Aligned_cols=535 Identities=41% Similarity=0.776 Sum_probs=474.2
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.++.+||++||||+|++|+||+.||++|.....+ |++++||||||||++|++||+++++++++|+++||++++++++
T Consensus 70 ~~~~vi~~~sT~G~G~~pd~~~~F~~~L~~~~~~---l~~~~~avfGlGd~~Y~~f~~~~k~~d~~L~~lGa~~~~~~g~ 146 (618)
T 3qe2_A 70 DNALVVFCMATYGEGDPTDNAQDFYDWLQETDVD---LSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGL 146 (618)
T ss_dssp TTCEEEEEEECBGGGBCCGGGHHHHHHHHHCCCC---CTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSCCEE
T ss_pred cCcEEEEEcCccCCCCCCHHHHHHHHHHhhcccc---ccCCEEEEEeCCCCCcHhHhHHHHHHHHHHHhCCCCEeecccc
Confidence 3678999999999999999999999999875433 9999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCceEEEEcCCccc----ccCCC-CCCCCCCCCCCCCC
Q 008647 82 GDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIHGPTVT----SSVDN-YSNMPNGNASFDIH 156 (558)
Q Consensus 82 ~d~~~~~~~~~~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~ 156 (558)
+|++.+++++|+.|.+.+|++|++.++.+..... ...+.|++....+... .+... .........+++.+
T Consensus 147 ~D~~~~~~~~~~~W~~~l~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (618)
T 3qe2_A 147 GDDDGNLEEDFITWREQFWLAVCEHFGVEATGEE------SSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAK 220 (618)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHHHTCCCC---------CCCCSEEEEECTTCCGGGSBCSCCSSTTTTTSCCSCCSSS
T ss_pred cccCCCcHHHHHHHHHHHHHHHHHHhCCCccccc------ccccceeEEecccccccccccccccccccccccCCCcccC
Confidence 9999899999999999999999998874321110 1224566655422110 11110 00111234567888
Q ss_pred CceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCC
Q 008647 157 HPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPR 236 (558)
Q Consensus 157 ~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~ 236 (558)
+|+.|+|++|++|+. +++++|+||+|++++++++|+|||+|+|+|.|+++.|+++|++||+++++.|++.......
T Consensus 221 ~~~~a~v~~n~~Lt~-~~~~~~~hie~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~v~~~~~~~~~--- 296 (618)
T 3qe2_A 221 NPFLAAVTTNRKLNQ-GTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEES--- 296 (618)
T ss_dssp SCEEEEEEEEEECSC-CSSSCEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCTTCEEEEEESCTTC---
T ss_pred CcEEEEEEeEEEcCC-CCCCcEEEEEEEcCCCCcccccCCEEEEEcCCCHHHHHHHHHHhCcCCCceEEEecCCccc---
Confidence 999999999999996 5679999999999988899999999999999999999999999999999999998764421
Q ss_pred CCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHcc--CCCchhHHHHHHhhcCCCHHHHHHh
Q 008647 237 GSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLS--SPQGKDDYSQWVVASQRSLLEVMAE 314 (558)
Q Consensus 237 ~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~--s~~~~~~~~~~~~~~~~~~~d~l~~ 314 (558)
..+.|+|.|+|++++|++|+||+++|+++||+.||.||+|+.+|++|.+|+ +++|++.|++|+.+++++++|||.+
T Consensus 297 --~~~~~~p~~~tl~~~l~~~~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~i~dvL~~ 374 (618)
T 3qe2_A 297 --NKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQD 374 (618)
T ss_dssp --SCCSSSSSSEEHHHHHHHTBCCSSCCCHHHHHHHGGGBCSHHHHHHHHHTTCSSSHHHHHHHHHTTTTTCCHHHHHHH
T ss_pred --cCCCCCCCceEHHHhhhhEeecCCCCcHHHHHHHHHHcCCHHHHHHHHHhhccChhhHHHHHHHHhhcCCCHHHHHHh
Confidence 245689999999999999999999999999999999999999999999998 7889999999999999999999999
Q ss_pred CCCCCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCC-CCCCCCcc----
Q 008647 315 FPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIP-LEGNGDCS---- 389 (558)
Q Consensus 315 f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~-G~~~~~~~---- 389 (558)
||++++|+++|++++ |+++||+|||||+|..+++.++|+|+++.|+++.++.+.|.||+||+++.+ | +
T Consensus 375 fps~~~p~~~l~~~l-p~l~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~~G------d~~~~ 447 (618)
T 3qe2_A 375 CPSLRPPIDHLCELL-PRLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVG------ENGGR 447 (618)
T ss_dssp STTBCCCHHHHHHHS-CBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCCC-----------C
T ss_pred CCccCCCHHHHHHhc-cccccceeccccCCcCCCCEEEEEEEEEEEecCCCCCCCCcccHHHHhhcccC------CCCcc
Confidence 999999999999999 999999999999998778999999999999998888999999999999888 7 6
Q ss_pred -EEEEEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcC
Q 008647 390 -WAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG 468 (558)
Q Consensus 390 -~v~v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~ 468 (558)
.|.|.+|.|.|.+|.++.+|+||||+|||||||+||++++.....++...++++||||||+++.|++|++||++|.+.+
T Consensus 448 ~~v~v~~p~g~F~lp~~~~~piimIg~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~~G~R~~~~D~ly~~el~~~~~~g 527 (618)
T 3qe2_A 448 ALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDG 527 (618)
T ss_dssp CEEEEEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHT
T ss_pred eEEEEEEecCcccCCCCCCCCeEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCccccchHHHHHHHHhcC
Confidence 8999999999999988789999999999999999999998865444434689999999999955999999999999999
Q ss_pred CccEEEEEEecCCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 008647 469 VISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQ 548 (558)
Q Consensus 469 ~~~~~~~a~Sr~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~ 548 (558)
.+++++++|||++..++|||+++.++.+.+++++.+++.||||||+..|+++|.++|.+++++++++++++|++|+++|+
T Consensus 528 ~l~~l~~a~Srd~~~k~yVqd~l~~~~~~l~~~l~~~a~vYvCGp~~~M~~~V~~~L~~i~~~~g~~~~~~a~~~~~~l~ 607 (618)
T 3qe2_A 528 ALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLM 607 (618)
T ss_dssp SSSEEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHHTCEEEEEEETTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEEEcCCCCCCCcHHHHHHHhHHHHHHHHhCCcEEEEECCchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 88899999999988899999999999999999888899999999944899999999999999999999999999999999
Q ss_pred HCCCeEEeeC
Q 008647 549 MEGRYLRDVW 558 (558)
Q Consensus 549 ~~~Ry~~dvw 558 (558)
++|||++|||
T Consensus 608 ~~~RY~~Dv~ 617 (618)
T 3qe2_A 608 TKGRYSLDVW 617 (618)
T ss_dssp HTTSEEEEEE
T ss_pred HcCCeEEeec
Confidence 9999999999
No 2
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=100.00 E-value=2.9e-98 Score=840.01 Aligned_cols=536 Identities=32% Similarity=0.570 Sum_probs=457.3
Q ss_pred CC-cEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCc
Q 008647 2 LH-SIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 80 (558)
Q Consensus 2 ~~-~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~ 80 (558)
.+ +.+||++||||+|++|+||..||+||.... ...|++++|||||+||++|++||.+++.++++|+++||+++.+++
T Consensus 97 ~~~~~vi~~~sT~G~G~~p~~~~~F~~~l~~~~--~~~L~~~~~avfGlGds~Y~~f~~a~k~l~~~L~~lGa~~l~~~~ 174 (682)
T 2bpo_A 97 DVPVIVSIFISTYGEGDFPDGAVNFEDFICNAE--AGALSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSAAGAIRLGKLG 174 (682)
T ss_dssp GCCSEEEEEEECBTTTBCCSSCHHHHHHHHTCC--TTSSTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCE
T ss_pred hcCCeEEEEeCccCCCCCCHHHHHHHHHHHhcc--chhccCCEEEEEecCCCCchhHhHHHHHHHHHHHHCCCeEeECcE
Confidence 35 899999999999999999999999998754 123899999999999999999999999999999999999999999
Q ss_pred ccCCCC-CchhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCceEEEEcCC---cccccCCCCCCC----------
Q 008647 81 LGDDDQ-CIEDDFTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIHGP---TVTSSVDNYSNM---------- 146 (558)
Q Consensus 81 ~~d~~~-~~~~~~~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---------- 146 (558)
++|+++ +.+++|+.|.+++|++|++.++.+..... ..+.+.++.... ....+.+.....
T Consensus 175 ~~D~~~~~~~~~~~~W~~~l~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (682)
T 2bpo_A 175 EADDGAGTTDEDYMAWKDSILEVLKDELHLDEQEAK-------FTSQFQYTVLNEITDSMSLGEPSAHYLPSHQLNRNAD 247 (682)
T ss_dssp EEETTTTCHHHHHHHHHHHHHHHHHHHTTCCCCCCC-------CCCSBCCEECSSCCTTSCSSCSSGGGSTTSCCCCCTT
T ss_pred EEecCCcccHHHHHHHHHHHHHHHHhhcCCcccccc-------cCCcceeEecccCCccccccCcccccccccccccccc
Confidence 999986 78999999999999999998764322110 123333332211 111111110000
Q ss_pred CCCCCCCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEE
Q 008647 147 PNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSL 226 (558)
Q Consensus 147 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~ 226 (558)
.+...+++.++||.|+|++|++|++ +++++|+||+|++++++++|+|||+|+|+|.|+++.|+++|++||++++++|++
T Consensus 248 ~~~~~~~~~~~p~~a~v~~~~~L~~-~~~~~~~hie~d~~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~d~~v~~ 326 (682)
T 2bpo_A 248 GIQLGPFDLSQPYIAPIVKSRELFS-SNDRNCIHSEFDLSGSNIKYSTGDHLAVWPSNPLEKVEQFLSIFNLDPETIFDL 326 (682)
T ss_dssp CCBCSCCBTTBCCCEEEEEEEECCC-CSSCCEEEEEEECTTBTCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEEEC
T ss_pred ccccCcccCCCceEEEEEEEEEccC-CCCCCEEEEEEEcCCCCceecCCCEEEEEcCCCHHHHHHHHHHhhccCCcEEEE
Confidence 0123467788999999999999998 788999999999998899999999999999999999999999999999999998
Q ss_pred ecCCCCCCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCC
Q 008647 227 HTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQR 306 (558)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~ 306 (558)
....+. .+.|+|.|+|++++|++|+||+++|+|+||+.||.||+|+.+|++|++|+ +|++.|++|+.++++
T Consensus 327 ~~~~~~-------~~~p~p~~~tl~~~l~~~ldi~~~p~~~~l~~la~~a~~~~~k~~L~~l~--~~~~~~~~~~~~~~~ 397 (682)
T 2bpo_A 327 KPLDPT-------VKVPFPTPTTIGAAIKHYLEITGPVSRQLFSSLIQFAPNADVKEKLTLLS--KDKDQFAVEITSKYF 397 (682)
T ss_dssp CBSSTT-------CCCSSCSSEEHHHHHHHTBCCSSCCCHHHHHHHSTTCSSHHHHHHHHHHT--TCHHHHHHHTGGGTC
T ss_pred ecCCcc-------cCCCCCCCccHHHHHHHhhhccCCCCHHHHHHHHHHCCCHHHHHHHHHhc--cCHHHHHHHHhcCCC
Confidence 755431 34589999999999999999999999999999999999999999999997 799999999999999
Q ss_pred CHHHHHHhCC----CCCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCC---CCcccCcccHHhhhc
Q 008647 307 SLLEVMAEFP----SATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPT---GRIHKGVCSTWMKNA 379 (558)
Q Consensus 307 ~~~d~l~~f~----~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~---~~~~~G~~S~~L~~l 379 (558)
|++|+|.+|| ++++|+++++.++ |+++||+|||||+|..+++.++|+|+++.|+++. ++.+.|+||+||+++
T Consensus 398 ~i~dvL~~fp~~~~s~~~p~~~l~~~l-p~l~~R~YSIsSsp~~~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l 476 (682)
T 2bpo_A 398 NIADALKYLSDGAKWDTVPMQFLVESV-PQMTPRYYSISSSSLSEKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNI 476 (682)
T ss_dssp CHHHHHHHHHTTCCCTTSCHHHHHHHS-CBCCCEEEEBCSCTTTCTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHH
T ss_pred CHHHHHHhccCcccccCCCHHHHHHhC-cccccccccccCCcccCCCeEEEEEEEEEEecCcccCCcccCccccHHHHhc
Confidence 9999999999 8899999999998 9999999999999987679999999999998875 577899999999998
Q ss_pred CCCC---C---CCCccEEEEEee--------------CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhh-----
Q 008647 380 IPLE---G---NGDCSWAPIFIR--------------PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQ----- 434 (558)
Q Consensus 380 ~~G~---~---~~~~~~v~v~~p--------------~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~----- 434 (558)
++|. + ...++.+.|.+| .+.|.+|.++.+|+||||+||||||||||++++.....
T Consensus 477 ~~g~~~~~~~~~~~G~~v~i~GP~G~f~~~~v~v~vr~~~F~Lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~ 556 (682)
T 2bpo_A 477 QLAQNNVNIAETNLPVHYDLNGPRKLFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKG 556 (682)
T ss_dssp HHHHTTCCTTTSCCCCCCCSSCGGGTTTTTEECEEEECCSCCCCSSTTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC--
T ss_pred ccccccccccccccccceeeccCcCcccCceEEEEEecCcccCCCCCCCCEEEEecCcChHHHHHHHHHHHHhhcccccc
Confidence 7720 0 000044444444 44568887778899999999999999999999987543
Q ss_pred -cCCCCCCeEEEEeccCCCCccccHHHHHHHH-HcCCccEEEEEEec-CCCCccchhhhhHhcHHHHHHhhhCCCEEEEe
Q 008647 435 -DGAQLGPALLFFGCRNRRMDFIYEDELNNFE-EEGVISELILAFSR-EGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVC 511 (558)
Q Consensus 435 -~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~-~~~~~~~~~~a~Sr-~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvC 511 (558)
.+...++++||||||++. |++|++||++|+ +.+.+++++++||| ++..++|||++|.++.+.+++++.+++.||||
T Consensus 557 ~~g~~~~~~~L~fG~R~~~-D~ly~dEl~~~~~~~g~~~~l~~afSr~d~~~k~yVqd~l~e~~~~l~~~l~~~~~vYvC 635 (682)
T 2bpo_A 557 GNNVSLGKHILFYGSRNTD-DFLYQDEWPEYAKKLDGSFEMVVAHSRLPNTKKVYVQDKLKDYEDQVFEMINNGAFIYVC 635 (682)
T ss_dssp --CCCCCCEEEEEEESSSS-SCTTTTTHHHHHHHHGGGEEEEEEESCCTTSCCCCHHHHHHHTHHHHHHHHTTTCEEEEE
T ss_pred cccCCcCCEEEEEecCChh-hhhhHHHHHHHHHhcCCceEEEEEECCCCCCCCcchHHHHHhhHHHHHHHHhCCcEEEEe
Confidence 232368999999999996 999999999995 55778899999999 55579999999999999999988778999999
Q ss_pred CCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 512 GDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 512 Gp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
||+++|+++|.++|.+++++++++++++|++|+++|+++|||++|||
T Consensus 636 Gpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~Dvw 682 (682)
T 2bpo_A 636 GDAKGMAKGVSTALVGILSRGKSITTDEATELIKMLKTSGRYQEDVW 682 (682)
T ss_dssp ECSTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCchHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 99668999999999999999999999999999999999999999999
No 3
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=100.00 E-value=2.9e-95 Score=815.76 Aligned_cols=537 Identities=33% Similarity=0.596 Sum_probs=454.4
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCC----------------------------C-----------CCCCCCce
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGND----------------------------R-----------GPWLQQLK 43 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~----------------------------~-----------~~~l~~~~ 43 (558)
++++||++||||+|+||+|++.|+++|..+.. + ...|++++
T Consensus 58 ~~~vl~vtsT~G~Gdpp~n~~~F~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~L~~~~ 137 (688)
T 1tll_A 58 EALVLVVTSTFGNGDPPENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFESTGPLANVR 137 (688)
T ss_dssp CSEEEEEECCBTTTBCCGGGHHHHHHHHHHTC-----CCCCCHHHHTSCCC----------------------CTTTTCE
T ss_pred CceEEEEEcccCCCcCCHHHHHHHHHHHhccCCccccccccccccccccccccccccccccccccccccccccccCCCCe
Confidence 57899999999999999999999999986510 0 13589999
Q ss_pred EEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcccCCCCCchhHHHHHHHHHHHHHHHhhcCCCCCCCCC------
Q 008647 44 FGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANTVS------ 117 (558)
Q Consensus 44 ~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~~d~~~~~~~~~~~W~~~l~~~l~~~~~~~~~~~~~~------ 117 (558)
||||||||++|++||++++.+|++|+++||++|++++++|+..+.+.+|+.|.+.+|+++++.+....+.....
T Consensus 138 ~aVfGlGds~Y~~F~~~~k~ld~~L~~lGa~rl~~~~~~D~~~g~e~~f~~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 217 (688)
T 1tll_A 138 FSVFGLGSRAYPHFCAFGHAVDTLLEELGGERILKMREGDELCGQEEAFRTWAKKVFKAACDVFCVGDDVNIEKPNNSLI 217 (688)
T ss_dssp EEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSCCEEEETTTTHHHHHHHHHHHHHHHHHHHHTCCSSSCCC-------
T ss_pred EEEEeeccCchHHHHHHHHHHHHHHHHcCCceeecceeeccCCCcHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Confidence 99999999999999999999999999999999999999999888999999999999999999875432211000
Q ss_pred CC-CccCCCceEEEEcCCcccccCCCCCCCCCCCCCCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCC-CccccCC
Q 008647 118 TP-YTAAIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGT-GITYETG 195 (558)
Q Consensus 118 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~-~~~y~~G 195 (558)
.+ .....+.+++......... .....+++.++|+.++|++|++|++++++++|+||+|+++++ +++|+||
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~a~v~~~~~Lt~~~~~~~~~hiel~~~~~~~~~Y~~G 289 (688)
T 1tll_A 218 SNDRSWKRNKFRLTYVAEAPDL--------TQGLSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPG 289 (688)
T ss_dssp CCSSSCCTTTEEEEECSCCCCH--------HHHHHHHTTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTT
T ss_pred ccccccCCcceEEecccccccc--------cccccccccCCceEEEEEeeeecCCCCCCceEEEEEEecCCCCCCccCCC
Confidence 00 0011233444332111000 000012456788999999999999999999999999999764 6999999
Q ss_pred CeEEEeecCCHHHHHHHHHHhCC--CCccEEEEecCCCCCCCCC----CCCCCCCCCcccHHHHHhhhccccCCccHHHH
Q 008647 196 DHVGVYVENCDETVEEAGKLLGQ--SLELLFSLHTDNEDGTPRG----SSLTPPFPGPCTLRTALARYADILNPPRKAAL 269 (558)
Q Consensus 196 D~l~i~p~N~~~~V~~~l~~l~l--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l 269 (558)
|+|+|+|+|+++.|+++|++||+ ++++.|++....+...+.+ ...+.++| |+|++++|++|+||+++|++.||
T Consensus 290 D~l~V~P~N~~~~V~~~l~~l~~~~~~d~~v~~~~~~~~~~p~~~~~~~~~~~~~p-~~tl~~~l~~~lDi~~~p~~~~l 368 (688)
T 1tll_A 290 DHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEMLEERNTALGVISNWKDESRLP-PCTIFQAFKYYLDITTPPTPLQL 368 (688)
T ss_dssp CEEEECCCCCHHHHHHHHTTCSSCCCSCSCEEEEEEEECCCSSSCCEEEEECCSSC-SBCHHHHHHHTBCCSSCCCHHHH
T ss_pred CEEEEecCCCHHHHHHHHHHhCCCCCCCeEEEEeccccccCCCcccccccccCCCC-CccHHHHHHhheeCCCCCCHHHH
Confidence 99999999999999999999986 5688888865322111100 01235788 99999999999999999999999
Q ss_pred HHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHHHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCCCCC
Q 008647 270 IALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPD 349 (558)
Q Consensus 270 ~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~ 349 (558)
+.||.||+|+.+|++|++|++ +++.|.+|+..++++++|+|.+||++++|++.++..+ |++.+|+|||||+|..+++
T Consensus 369 ~~la~~a~~~~ek~~L~~l~~--~~~~~~~~~~~~~~~i~evl~~fps~~~p~~~l~~~l-p~l~~R~YSIsSsp~~~~~ 445 (688)
T 1tll_A 369 QQFASLATNEKEKQRLLVLSK--GLQEYEEWKWGKNPTMVEVLEEFPSIQMPATLLLTQL-SLLQPRYYSISSSPDMYPD 445 (688)
T ss_dssp HHHHTTBCCHHHHHHHHHHTT--CSHHHHHHHHHHCCCHHHHHHHSTTBCCCHHHHHHHS-CBCCCEEEEBCSCTTTSTT
T ss_pred HHHHHHcCCHHHHHHHHHHhc--CHHHHHHHHhhcCCCHHHHHHhCCCcCCCHHHHHHhC-cccceeEEeecCCcccCCC
Confidence 999999999999999999975 7889999999999999999999999999999999888 9999999999999976678
Q ss_pred eEEEEEEEEEccCCCC--CcccCcccHHhhhcCCCCCCCCccEEEEEeeC-CCCcCCCCCCCCEEEEccCccccchHHHH
Q 008647 350 RVHVTCALVYGPTPTG--RIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRP-SNFKLPANPSVPIIMVGPGTGLAPFRGFL 426 (558)
Q Consensus 350 ~i~l~v~vv~~~~~~~--~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~-g~F~lp~~~~~plilIa~GtGIAP~~s~l 426 (558)
.++|+|+++.|+++.| +.+.|.||+||+++++| +.|.|.+|. |.|.+|.+..+|+||||+|||||||+||+
T Consensus 446 ~i~l~V~vv~~~~~~g~~~~~~G~~S~~L~~l~~G------d~v~v~~~p~g~F~lp~~~~~piIlIagGtGIAP~~s~l 519 (688)
T 1tll_A 446 EVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQAD------DVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFW 519 (688)
T ss_dssp EEEEEEECCEEETGGGTSCEEECHHHHHHTTCCTT------SEEEEEEECCGGGSCCSCTTSCEEEEEEGGGGTTHHHHH
T ss_pred eEEEEEEEEEEecCCCCCCcCCCchhHHHHhCCCC------CEEEEEeccCCCcccCcCCCCCEEEEEcCcchHHHHHHH
Confidence 9999999998876643 56789999999999999 899999965 49999987788999999999999999999
Q ss_pred HHHHHHhh-cCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCCC-ccchhhhhHhc-HHHHHHhh-
Q 008647 427 QERMALKQ-DGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQ-KEYVQHKMMDK-AAQLWSLL- 502 (558)
Q Consensus 427 ~~~~~~~~-~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~~-k~yvq~~l~~~-~~~l~~~~- 502 (558)
+++..... .+...++++||||||+.+.|++|++||++|++.+.++++++++||++.. ++|||++|.++ .+.+++++
T Consensus 520 ~~~~~~~~~~~~~~~~v~L~~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~~k~yVq~~l~~~l~~~l~~~l~ 599 (688)
T 1tll_A 520 QQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALK 599 (688)
T ss_dssp HHHHHHHHHSCCCCCCEEEEEEESCTTTTCTTHHHHHHHHHTTSEEEEEEEESSCTTSCCCCHHHHHHHSSHHHHHHHHH
T ss_pred HHHHHhhhhccCCCCCEEEEEEeccchhhhhHHHHHHHHHHcCCceEEEEEECCCCCCCccchhhhhHHhHHHHHHHhhc
Confidence 99876421 1224689999999999876899999999999999888999999999764 89999999988 77788766
Q ss_pred hCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 503 SKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 503 ~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
..+++|||||| ++|+++|.++|.+++.+++++++++|++|+++|++++||++|+|
T Consensus 600 ~~~~~vYvCGp-~~M~~~V~~~L~~i~~~~gg~~~~~a~~~l~~l~~~~ry~~Evf 654 (688)
T 1tll_A 600 EQGGHIYVCGD-VTMAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYHEDIF 654 (688)
T ss_dssp TSCCEEEEEEE-HHHHHHHHHHHHHHHHTTTCCCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCcEEEEeCC-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhhcCCEEEEec
Confidence 56899999999 78999999999999999999999999999999999999999998
No 4
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=100.00 E-value=1e-83 Score=687.30 Aligned_cols=429 Identities=41% Similarity=0.765 Sum_probs=380.9
Q ss_pred CCCceEEEEcCCcc----cccCCCC-CCCCCCCCCCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCe
Q 008647 123 AIPEYRVMIHGPTV----TSSVDNY-SNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDH 197 (558)
Q Consensus 123 ~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~ 197 (558)
..+.|++..+++.. ..+++.. ....++..+|+.++||.|+|++|++||+ +++|+|+||+|++++++++|+|||+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~ge~~~~~~~~~~~~~~~~~~p~~a~v~~n~~Lt~-~~~r~~~hie~dl~~s~l~Y~~GD~ 100 (458)
T 3qfs_A 22 SIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQ-GTERHLMHLELDISDSKIRYESGDH 100 (458)
T ss_dssp --CCEEEEECTTCCGGGCBSSCSSSTTTTTSCCSCCCSSSCEEEEEEEEEECCS-SSSSCEEEEEEECTTSCCCCCTTCE
T ss_pred ceeceEEEEccCccccccccCChhhcccccccCCCCCCCCCEEEEEEEEEEcCC-CCCCCEEEEEEEeCCCCcccCCCCE
Confidence 45778888875443 2344322 1233466789999999999999999997 5679999999999988999999999
Q ss_pred EEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCC
Q 008647 198 VGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHAT 277 (558)
Q Consensus 198 l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~ 277 (558)
|+|+|.|+++.|+++|++||++++..|++....... ..+.|+|.|+|++++|++|+||+++|+++||+.||.||+
T Consensus 101 l~V~p~N~~~~V~~~l~~l~~~~d~~v~~~~~~~~~-----~~~~p~~~~~tl~~~l~~~~di~~~p~~~~l~~la~~a~ 175 (458)
T 3qfs_A 101 VAVYPANDSALVNQLGKILGADLDVVMSLNNLDEES-----NKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYAS 175 (458)
T ss_dssp EEECCCCCHHHHHHHHHHHTCCTTCEEEEEESSTTC-----SCCCSSSSSEEHHHHHHHTBCCSSCCCHHHHHHHGGGBC
T ss_pred EEEEeeCCHHHHHHHHHHhCcCCCceEEecCCCccc-----ccCCCCCCCeeHHHHHHhcEeccCCCCHHHHHHHHHHcC
Confidence 999999999999999999999999999998654321 235689999999999999999999999999999999999
Q ss_pred CHhHHHHHHHccCC--CchhHHHHHHhhcCCCHHHHHHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEE
Q 008647 278 EPSEAERLKFLSSP--QGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTC 355 (558)
Q Consensus 278 ~~~~k~~L~~l~s~--~~~~~~~~~~~~~~~~~~d~l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v 355 (558)
|+.+|++|++|++. +|++.|++|+.++++|++|||.+||++++|+++|++++ |+++||+|||||+|..+++.++|+|
T Consensus 176 ~~~ek~~L~~l~~~~~~~~~~~~~~~~~~~~~ildvL~~fps~~~p~~~ll~~l-p~l~pR~YSIsSsp~~~~~~i~ltV 254 (458)
T 3qfs_A 176 EPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCELL-PRLQARYYSIASSSKVHPNSVHICA 254 (458)
T ss_dssp SHHHHHHHHHHHSCSHHHHHHHHHHTTTTTCCHHHHHHHSTTBCCCHHHHHHHS-CBCCCEEEECCSCTTTCTTEEEEEE
T ss_pred CHHHHHHHHHHhccCcccHHHHHHHHhhcCCCHHHHHHhCCccCCCHHHHHhhC-CCCcceeEeeccCcccCCCEEEEEE
Confidence 99999999999874 68899999999999999999999999999999999999 9999999999999987789999999
Q ss_pred EEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhc
Q 008647 356 ALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQD 435 (558)
Q Consensus 356 ~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~ 435 (558)
+++.|+++.++.+.|.||+||+++.+||+......|.+.+|.|.|.+|.++.+|+||||+|||||||+||++++..+.++
T Consensus 255 ~vv~~~~~~~r~~~G~~S~~L~~l~~gg~~~~~~~v~v~~p~g~F~lp~~~~~piImIggGTGIAPfrs~lq~r~~l~~~ 334 (458)
T 3qfs_A 255 VVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQ 334 (458)
T ss_dssp ECCEEECTTSCEEECHHHHHHHTCCSSCSSCCCCEEEEEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCCCCCchhHHHHhhccCCccCCceEEEEEecCCCcccCCCCCCceEEEcCCcchhhHHHHHHHHHHHHhc
Confidence 99999988888999999999999888741111116999999999999987788999999999999999999998654333
Q ss_pred CCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCc
Q 008647 436 GAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAK 515 (558)
Q Consensus 436 ~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~ 515 (558)
+...++++||||||+.+.|++|++||++|++.+.+++++++|||++..++|||+++.++.+.+++++.+++.||||||+.
T Consensus 335 g~~~~~~~Lf~G~R~~~~D~ly~dEl~~l~~~g~l~~l~~a~SRd~~~k~yVqd~l~~~~~~l~~~l~~~~~vYvCGp~~ 414 (458)
T 3qfs_A 335 GKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDAR 414 (458)
T ss_dssp TCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCCCEEEEEEeCCchHhhhHHHHHHHHHHcCCCCEEEEEEECCCCCcccHhHHHHHhHHHHHHHhcCCCEEEEECCCH
Confidence 33458899999999974499999999999999988889999999988899999999999999999888899999999955
Q ss_pred chHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 516 GMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 516 ~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
.|+++|.++|.+++++++++++++|++|+++|+++|||++|||
T Consensus 415 ~M~~~V~~~L~~i~~~~g~~~~~~A~~~~~~l~~~~RY~~Dvw 457 (458)
T 3qfs_A 415 NMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 457 (458)
T ss_dssp THHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEEec
Confidence 8999999999999999999999999999999999999999999
No 5
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=100.00 E-value=3.9e-79 Score=665.60 Aligned_cols=402 Identities=34% Similarity=0.616 Sum_probs=355.4
Q ss_pred CCCCCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCC--ccEEEE
Q 008647 149 GNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSL--ELLFSL 226 (558)
Q Consensus 149 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~--~~~~~~ 226 (558)
...+|+..+||.|+|++|++||+++++|+|+||+|++++++++|+|||+|+|+|.|+++.|+++|++||+++ +.+|.+
T Consensus 105 ~~~~~~~~~~~~a~v~~~~~Lt~~~~~r~v~hield~~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~v~~ 184 (539)
T 2qtl_A 105 QVSVTSADPVFQVPISKAVQLTTNDAIKTTLLVELDISNTDFSYQPGDAFSVICPNSDSEVQSLLQRLQLEDKREHCVLL 184 (539)
T ss_dssp --------CCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECCCCHHHHHHHHHHTTCGGGTTSEEEE
T ss_pred ccCCCCCCCCEEEEEEeeEEcCCCCCCCcEEEEEEecCCCCcCcCCCCEEEEEeCCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 456788999999999999999999999999999999998889999999999999999999999999999986 467887
Q ss_pred ecCCCCCCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCC
Q 008647 227 HTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQR 306 (558)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~ 306 (558)
........ .+...+.++|.++|++++|++|+||+++|+|.||+.||.||+|+.+|++|.+|++++|++.|++|+.++++
T Consensus 185 ~~~~~~~~-~~~~~p~~~p~~~tl~~~L~~~lDi~~~p~~~~l~~la~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~~ 263 (539)
T 2qtl_A 185 KIKADTKK-KGATLPQHIPAGCSLQFIFTWCLEIRAIPKKAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRFVRDACA 263 (539)
T ss_dssp EECTTCCC-TTCCCCTTSCTTCBHHHHHHHTBCTTSCCCHHHHHHHHTTBCSHHHHHHHHHHHSSTTHHHHHHHTTTTTC
T ss_pred eccccccC-CCccCCCCCCCcccHHHHHHHHhhhcCCCCHHHHHHHHHHcCCHHHHHHHHHHhChhhHHHHHHHHhhcCC
Confidence 76543221 12345678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCC--CCCcccCcccHHhhhc-----
Q 008647 307 SLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTP--TGRIHKGVCSTWMKNA----- 379 (558)
Q Consensus 307 ~~~d~l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~--~~~~~~G~~S~~L~~l----- 379 (558)
|++|+|.+||++++|+++|++++ |++++|+|||||+|..+++.++|+|+++.|+++ .++.+.|+||+||+++
T Consensus 264 ~lldvL~~fps~~~p~~~ll~~l-p~l~~R~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~~ 342 (539)
T 2qtl_A 264 CLLDLLLAFPSCQPPLSLLLEHL-PKLQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVL 342 (539)
T ss_dssp CHHHHHHHSTTBCCCHHHHHHHS-CBCCCEEEECCSCTTTSTTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTTC
T ss_pred CHHHHHHhCCCcCCCHHHHHHhC-cCCcceEEeecCCccCCCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhhhc
Confidence 99999999999999999999999 999999999999997567999999999988543 3456789999999997
Q ss_pred ------CCCCCCCCcc-------EEEEEeeCC-CCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcC--CCCCCeE
Q 008647 380 ------IPLEGNGDCS-------WAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG--AQLGPAL 443 (558)
Q Consensus 380 ------~~G~~~~~~~-------~v~v~~p~g-~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~--~~~~~i~ 443 (558)
++| + .|.|.+|.| .|.+|.+..+|+||||+||||||||||++++....+.+ ...++++
T Consensus 343 ~~~~~~~~G------d~~~~~~~~V~v~~p~g~~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~ 416 (539)
T 2qtl_A 343 QPNIHASHE------DSGKALAPKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMW 416 (539)
T ss_dssp --------------------CCCEEEEEECSCCCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEE
T ss_pred cccccCCCC------CccccCceEEEEEeeeCCCccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEE
Confidence 788 7 999999986 99999877899999999999999999999987644322 1368999
Q ss_pred EEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCC------CccchhhhhHhcHHHHHHhh-hCCCEEEEeCCCcc
Q 008647 444 LFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS------QKEYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAKG 516 (558)
Q Consensus 444 L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~------~k~yvq~~l~~~~~~l~~~~-~~~~~iyvCGp~~~ 516 (558)
||||||+.+.|++|++||++|++.+.+++++++|||++. .++|||++|.++.+.+++++ ..+++||||||+.+
T Consensus 417 LffG~R~~~~D~ly~dEL~~~~~~g~~~~l~~afSRd~~~~~~~g~k~yVqd~l~e~~~~l~~~l~~~~a~vYVCGp~~~ 496 (539)
T 2qtl_A 417 LFFGCRHKDRDYLFRKELRHFLKHGILTHLKVSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDAKN 496 (539)
T ss_dssp EEEEESCTTTCCTTHHHHHHHHHTTSSCEEEEEESSSCC------CCCSHHHHHHHTHHHHHHHHHHSCCEEEEEESCHH
T ss_pred EEEEECCcchhhHHHHHHHHHHHhCCCcEEEEEEccCCCccccCCCccchhHHHHHhHHHHHHhhccCCcEEEEECCCHH
Confidence 999999994499999999999999998899999999976 68999999999999999988 56899999999438
Q ss_pred hHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 517 MARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 517 M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
|+++|.++|.+++++++++++++|++|+++|+++|||++|||
T Consensus 497 M~~~V~~~L~~i~~~~~~~~~~~A~~~l~~l~~~~RY~~Dvw 538 (539)
T 2qtl_A 497 MAKDVHDALVQIISKEVGVEKLEAMKTLATLKEEKRYLQDIW 538 (539)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcEEEEcC
Confidence 999999999999999999999999999999999999999999
No 6
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=100.00 E-value=3.8e-78 Score=635.94 Aligned_cols=383 Identities=34% Similarity=0.609 Sum_probs=341.5
Q ss_pred CceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCC
Q 008647 157 HPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPR 236 (558)
Q Consensus 157 ~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~ 236 (558)
.++.|+|++|++||+++++++|+||+|++++ +++|+|||+|+|+|.|+++.|+++|++||++++..|++......
T Consensus 5 ~~~~a~v~~n~~Lt~~~~~~~~~hie~~l~~-~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~---- 79 (393)
T 4dql_A 5 GAFSTNVVASKELQQPGSARSTRHLEIELPK-EASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIRLEAEEEK---- 79 (393)
T ss_dssp CCEEEEEEEEEECSCTTCSCCEEEEEEECCT-TCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEECCCC--------
T ss_pred CcEEEEEEeEEEcCCCCCCceEEEEEEECCC-CCccCCCCEEEEEccCCHHHHHHHHHHhCcCCCCeEEEeCCCCc----
Confidence 4678999999999999999999999999985 89999999999999999999999999999999988876542211
Q ss_pred CCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHHHhCC
Q 008647 237 GSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFP 316 (558)
Q Consensus 237 ~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l~~f~ 316 (558)
....|++.|+|++++|++ +||+++|+++||+.||.||+|+.+|++|++|++. +.|.+|+.++++|++|+|.+||
T Consensus 80 --~~~~p~~~~~tl~~~l~~-~di~~~~~~~~l~~la~~~~~~~~~~~L~~l~~~---~~~~~~~~~~~~~~ldvL~~fp 153 (393)
T 4dql_A 80 --LAHLPLAKTVSVEELLQY-VELQDPVTRTQLRAMAAKTVCPPHKVELEALLEK---QAYKEQVLAKRLTMLELLEKYP 153 (393)
T ss_dssp ---------CCEEHHHHTTS-BCSSSBCCHHHHHHHHHTCCSHHHHHHHHHTTSH---HHHHHHTTTTTCBHHHHHHHCT
T ss_pred --cccCCCCCcEEHHHHHHh-ccccCCCCHHHHHHHHHhCCCHHHHHHHHHHhCc---hHHHHHHhccCCCHHHHHHhCC
Confidence 124477889999999999 9999999999999999999999999999999763 3799999999999999999999
Q ss_pred CCCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCC-cccCcccHHhhhcCCCCCCCCccEEE--E
Q 008647 317 SATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGR-IHKGVCSTWMKNAIPLEGNGDCSWAP--I 393 (558)
Q Consensus 317 ~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~-~~~G~~S~~L~~l~~G~~~~~~~~v~--v 393 (558)
++++|+++|++++ |+++||+|||||+|..+++.++|+|+++.++++.|+ .+.|.||+||+++++| +.|. |
T Consensus 154 s~~~p~~~~l~~l-p~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~G------d~v~v~v 226 (393)
T 4dql_A 154 ACEMKFSEFIALL-PSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEG------DTITCFI 226 (393)
T ss_dssp TCCCCHHHHHHTS-CBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCTT------CEEEEEE
T ss_pred CCCCCHHHHHHhC-CCCcceeeeccccccccCceEEEEEEEEecccCCCCcccCCccchhHHhCCCc------CEEEEEE
Confidence 9999999999998 999999999999998767899999999988776554 4569999999999999 8888 5
Q ss_pred EeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEE
Q 008647 394 FIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISEL 473 (558)
Q Consensus 394 ~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~ 473 (558)
.+|.|.|.+|.+..+|+||||+|||||||+||++++......+...++++||||||++..|++|++||+++++.+.+ ++
T Consensus 227 ~~P~g~F~lp~~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~l-~l 305 (393)
T 4dql_A 227 STPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGII-TL 305 (393)
T ss_dssp ECCSSCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSC-EE
T ss_pred EcCCCCcccCccCCCCeEEEccCceechHHHHHHHHHHHHhcCCCCCCEEEEEEECCcchhhHHHHHHHHHHhCCCe-EE
Confidence 67889999998778899999999999999999999865544443457899999999954499999999999987654 79
Q ss_pred EEEEec-CCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCC
Q 008647 474 ILAFSR-EGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGR 552 (558)
Q Consensus 474 ~~a~Sr-~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R 552 (558)
++++|| ++..++|||+++.++.+.+++++.++++||||||++.|.++|+++|.+++++++++++++|++|+++|+++||
T Consensus 306 ~~a~Sr~~~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R 385 (393)
T 4dql_A 306 HTAFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGR 385 (393)
T ss_dssp EEEESSCTTSCCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCCCcchhhHHHhCHHHHHHHHhCCcEEEEECCchhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC
Confidence 999999 4557899999999999999998888999999999778999999999999999999999999999999999999
Q ss_pred eEEeeC
Q 008647 553 YLRDVW 558 (558)
Q Consensus 553 y~~dvw 558 (558)
|++|||
T Consensus 386 y~~dv~ 391 (393)
T 4dql_A 386 YAKDVW 391 (393)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 999999
No 7
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=100.00 E-value=4.8e-76 Score=628.61 Aligned_cols=396 Identities=36% Similarity=0.653 Sum_probs=352.2
Q ss_pred CCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCC-CccccCCCeEEEeecCCHHHHHHHHHHhCC--CCccEEEEec
Q 008647 152 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGT-GITYETGDHVGVYVENCDETVEEAGKLLGQ--SLELLFSLHT 228 (558)
Q Consensus 152 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~-~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l--~~~~~~~~~~ 228 (558)
.++.++|+.++|++|++|++++++++|+||+|+++++ +++|+|||+|+|+|.|+++.|+++|++||+ ++++.|++..
T Consensus 24 ~~~~~~~~~a~v~~~~~l~~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~d~~v~~~~ 103 (435)
T 1f20_A 24 NVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEM 103 (435)
T ss_dssp HHHTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTBSSCCCTTSCEEEEE
T ss_pred ccccCCcEEEEEEeEEECCCCCCCceEEEEEEECCCCCCCcCCCCCEEEEEecCCHHHHHHHHHHhCCCCCCCeEEEEec
Confidence 4677899999999999999999999999999999865 699999999999999999999999999986 6688888865
Q ss_pred CCCCCCCCC----CCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhc
Q 008647 229 DNEDGTPRG----SSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVAS 304 (558)
Q Consensus 229 ~~~~~~~~~----~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~ 304 (558)
..+...+.+ ...+.++| ++|++++|++|+||+++|+++||+.||.||+|+.+|++|++|++ +++.|.+|+...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~p-~~tl~~~l~~~~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~ 180 (435)
T 1f20_A 104 LEERNTALGVISNWKDESRLP-PCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSK--GLQEYEEWKWGK 180 (435)
T ss_dssp EEEESSSTTCEEEEEECCSSC-SBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTT--CSHHHHHHHHHH
T ss_pred cccccCCCCccccccccCCCC-CccHHHHHHhceecCCCCCHHHHHHHHHHCCCHHHHHHHHHhhc--CHHHHHHHHhcc
Confidence 321111100 01245788 99999999999999999999999999999999999999999975 788999999999
Q ss_pred CCCHHHHHHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCC--CcccCcccHHhhhcCCC
Q 008647 305 QRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG--RIHKGVCSTWMKNAIPL 382 (558)
Q Consensus 305 ~~~~~d~l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~--~~~~G~~S~~L~~l~~G 382 (558)
+++++|+|.+||++++|++.++..+ |++.+|+|||||+|..+++.++|+|+++.|.++.| +.+.|.||+||+++++|
T Consensus 181 ~~~i~~vl~~fps~~~p~~~l~~~l-p~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~G 259 (435)
T 1f20_A 181 NPTMVEVLEEFPSIQMPATLLLTQL-SLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQAD 259 (435)
T ss_dssp CCCHHHHHHHSTTBCBCHHHHHHHS-CBCCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTT
T ss_pred CCCHHHHHHhCCcCCCCHHHHHHhC-CCCCCccccccCCcccCCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCCC
Confidence 9999999999999999999999998 99999999999999766789999999998877653 56789999999999999
Q ss_pred CCCCCccEEEEEeeC-CCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhh-cCCCCCCeEEEEeccCCCCccccHHH
Q 008647 383 EGNGDCSWAPIFIRP-SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQ-DGAQLGPALLFFGCRNRRMDFIYEDE 460 (558)
Q Consensus 383 ~~~~~~~~v~v~~p~-g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~-~~~~~~~i~L~~G~R~~~~d~~y~~e 460 (558)
+.|.+.+|. |.|.+|.+..+|+||||+|||||||+||++++..... .+...++++||||||+.+.|++|++|
T Consensus 260 ------d~v~v~~~~~g~F~lp~~~~~piilIagGtGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~E 333 (435)
T 1f20_A 260 ------DVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREE 333 (435)
T ss_dssp ------CEEEEEEECCTTSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHH
T ss_pred ------CEEEEEEecCCCccCCCCCCCCEEEEECCcCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecccccchhHHHH
Confidence 899999954 5999998778899999999999999999999876321 12246899999999998768999999
Q ss_pred HHHHHHcCCccEEEEEEecCCCC-ccchhhhhHhc-HHHHHHhh-hCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCH
Q 008647 461 LNNFEEEGVISELILAFSREGSQ-KEYVQHKMMDK-AAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDS 537 (558)
Q Consensus 461 l~~~~~~~~~~~~~~a~Sr~~~~-k~yvq~~l~~~-~~~l~~~~-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~ 537 (558)
|+++++.+.++++++++||++.. ++|||+++.++ .+.+++++ ..++.|||||| ++|+++|.++|.+++.+++++++
T Consensus 334 l~~~~~~~~~~~l~~a~Sr~~~~~k~yVq~~l~~~l~~~~~~~l~~~~~~vYvCGp-~~M~~~V~~~L~~i~~~~~~~~~ 412 (435)
T 1f20_A 334 TLQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGD-VTMAADVLKAIQRIMTQQGKLSE 412 (435)
T ss_dssp HHHHHHTTSEEEEEEEESSCTTSCCCCHHHHHHHHSHHHHHHHHHTSCCEEEEEEC-HHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHcCCccEEEEEECCCCCCCCcchhhHHHhhhHHHHHHHHhcCCcEEEEeCC-hhHHHHHHHHHHHHHHHcCCCCH
Confidence 99999999888899999999764 89999999887 77788766 56899999999 78999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCeEEeeC
Q 008647 538 SKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 538 ~~a~~~~~~l~~~~Ry~~dvw 558 (558)
++|++|+++|+++|||++|||
T Consensus 413 ~~a~~~~~~l~~~~RY~~Dv~ 433 (435)
T 1f20_A 413 EDAGVFISRLRDDNRYHEDIF 433 (435)
T ss_dssp HHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 999999999999999999999
No 8
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=100.00 E-value=9.2e-75 Score=607.15 Aligned_cols=368 Identities=30% Similarity=0.521 Sum_probs=339.4
Q ss_pred CCCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCC
Q 008647 151 ASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDN 230 (558)
Q Consensus 151 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~ 230 (558)
++|+.++||.|+|++|++||+++++++|+||+|++++++++|+|||+|+|+|+|+++.|+++|++||++++..|++.
T Consensus 4 ~~~~~~~~~~a~v~~~~~lt~~~~~~~~~hi~~~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~v~~~--- 80 (374)
T 1ddg_A 4 SPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVE--- 80 (374)
T ss_dssp CCCBTTBCEEEEEEEEEECSCTTCSSEEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCSCSEEEET---
T ss_pred CCCCCCCCEEEEEEEEEEeCCCCCCceEEEEEEEcCCCCcccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCceEEEC---
Confidence 45788999999999999999999999999999999888899999999999999999999999999999999988873
Q ss_pred CCCCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHH
Q 008647 231 EDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLE 310 (558)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d 310 (558)
+.++|++++|++|+||+ +|+|+||+.||.||+|++ |.+|+ ++++.|.+|+. +++++|
T Consensus 81 --------------~~~~tl~~~l~~~~di~-~p~~~~l~~la~~~~~~~----L~~l~--~~~~~~~~~~~--~~~~~~ 137 (374)
T 1ddg_A 81 --------------GKTLPLNEALQWHFELT-VNTANIVENYATLTRSET----LLPLV--GDKAKLQHYAA--TTPIVD 137 (374)
T ss_dssp --------------TEEEEHHHHHHHHBCCS-CCCHHHHHHHHHHHTCTT----TGGGT--TCTHHHHHHHH--HSCHHH
T ss_pred --------------CCCccHHHHHHhcccCC-CCCHHHHHHHHHHCCCHH----HHHHh--cChHHHHHHHc--CCCHHH
Confidence 13899999999999999 899999999999999974 88886 47888999987 479999
Q ss_pred HHHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCcc
Q 008647 311 VMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCS 389 (558)
Q Consensus 311 ~l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~ 389 (558)
+|.+||+ .+++|||+++. +++.+|+|||||+|..+++.++|+|+++.|+++ ++.+.|.||+||++ +++| +
T Consensus 138 vl~~~p~-~~~~Gq~v~l~-~~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~-~~~~~G~~S~~L~~~l~~G------d 208 (374)
T 1ddg_A 138 MVRFSPA-QLDAEALINLL-RPLTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEEE------G 208 (374)
T ss_dssp HHHHSCC-CCCHHHHHHHS-CBCCCEEEEBCCCTTTSCSEEEEEEEECEEEET-TEEEECHHHHHHHHSCCSS------C
T ss_pred HHHHCCC-CCCHHHHHhhc-cCCCCccceecCCCCCCCCEEEEEEEEEEeecC-CCCCCCCchHHHHhcCCCC------C
Confidence 9999999 99999999999 889999999999997667899999999988775 56678999999999 9999 8
Q ss_pred EEEEEeeC-CCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcC
Q 008647 390 WAPIFIRP-SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG 468 (558)
Q Consensus 390 ~v~v~~p~-g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~ 468 (558)
.|.+.+|. |.|.+|.+..+|+||||+|||||||+||++++... + ..++++||||||+.+.|++|++||+++++.+
T Consensus 209 ~v~v~~~~~g~F~lp~~~~~piimIa~GtGIAP~~s~l~~~~~~---~-~~~~~~L~~G~R~~~~d~ly~~El~~~~~~~ 284 (374)
T 1ddg_A 209 EVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAAD---E-APGKNWLFFGNPHFTEDFLYQVEWQRYVKEG 284 (374)
T ss_dssp EEEEEEECCTTSCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHH---T-CCSCEEEEEEESCHHHHCTTHHHHHHHHHTT
T ss_pred EEEEEEeeCCCccCCCCCCCCEEEEECCccHHHHHHHHHHHHhc---C-CCCCEEEEEEeCCchhhhhHHHHHHHHHHhC
Confidence 99999965 49999977789999999999999999999998863 2 4578999999999833999999999999999
Q ss_pred CccEEEEEEecCCCCccchhhhhHhcHHHHHHhhhCCCEEEEeC-CCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q 008647 469 VISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCG-DAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKF 547 (558)
Q Consensus 469 ~~~~~~~a~Sr~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCG-p~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l 547 (558)
.++++++++||++..++|||+++.++.+.+++++.+++.||||| | ++|+++|.++|.+++++++++++++|++|+++|
T Consensus 285 ~~~~l~~a~Srd~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCG~p-~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l 363 (374)
T 1ddg_A 285 VLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDA-NRMAKDVEQALLEVIAEFGGMDTEAADEFLSEL 363 (374)
T ss_dssp SCCEEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEECT-TTHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCcEEEEEEecCCCCCccHHHHHHHhHHHHHHHHhCCcEEEEECCC-HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 88899999999988899999999998888999887899999999 7 899999999999999999999999999999999
Q ss_pred HHCCCeEEeeC
Q 008647 548 QMEGRYLRDVW 558 (558)
Q Consensus 548 ~~~~Ry~~dvw 558 (558)
+++|||++|||
T Consensus 364 ~~~~Ry~~dv~ 374 (374)
T 1ddg_A 364 RVERRYQRDVY 374 (374)
T ss_dssp HHTTCEEEEEC
T ss_pred HHCCCeEEecC
Confidence 99999999999
No 9
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=100.00 E-value=9.4e-39 Score=326.16 Aligned_cols=274 Identities=24% Similarity=0.417 Sum_probs=224.6
Q ss_pred CCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCC
Q 008647 152 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNE 231 (558)
Q Consensus 152 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~ 231 (558)
.++...|+.++|+++++|++.++++++++++|++++..+.|+||+++.|.++|.. .
T Consensus 15 ~~~~~~~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~~~~~pGQ~v~l~~~~~~------------------------~ 70 (304)
T 2bmw_A 15 LYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVD------------------------K 70 (304)
T ss_dssp SBBTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBC------------------------T
T ss_pred ccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCCccccCCCCEEEEEcCCCc------------------------c
Confidence 4556778999999999999988889999999998865689999999999887631 0
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHH
Q 008647 232 DGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 311 (558)
Q Consensus 232 ~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~ 311 (558)
.|
T Consensus 71 ------------------------------------------------------------~g------------------ 72 (304)
T 2bmw_A 71 ------------------------------------------------------------NG------------------ 72 (304)
T ss_dssp ------------------------------------------------------------TS------------------
T ss_pred ------------------------------------------------------------cC------------------
Confidence 00
Q ss_pred HHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCC---CCCeEEEEEEEEEccCCC-CCcccCcccHHhhhcCCCCCCCC
Q 008647 312 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPT-GRIHKGVCSTWMKNAIPLEGNGD 387 (558)
Q Consensus 312 l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~---~~~~i~l~v~vv~~~~~~-~~~~~G~~S~~L~~l~~G~~~~~ 387 (558)
.+..+|+|||+|+|.. +++.++|+|+++.|.++. ++.+.|.+|+||+++++|
T Consensus 73 -------------------~~~~~R~ySias~~~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~G----- 128 (304)
T 2bmw_A 73 -------------------KPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPG----- 128 (304)
T ss_dssp -------------------CBCCCEEEEBCSCTTTTTTSSSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCTT-----
T ss_pred -------------------CCCCCcceecCCCCcccCCCCCEEEEEEEEEEeeccccCcCCCcchhhHHhcCCCC-----
Confidence 0136799999999852 357899999987666543 334579999999999999
Q ss_pred ccEEEEEeeCCCC-cCCCCCCCCEEEEccCccccchHHHHHHHHHHhhc--C---CCCCCeEEEEeccCCCCccccHHHH
Q 008647 388 CSWAPIFIRPSNF-KLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQD--G---AQLGPALLFFGCRNRRMDFIYEDEL 461 (558)
Q Consensus 388 ~~~v~v~~p~g~F-~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~--~---~~~~~i~L~~G~R~~~~d~~y~~el 461 (558)
+.|.|.+|.|.| .++.+..+|+||||+|||||||+||++++...... + ...++++||||+|+.+ |++|.+||
T Consensus 129 -d~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~v~l~~g~r~~~-d~~~~~el 206 (304)
T 2bmw_A 129 -SEVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTP-NILYKEEL 206 (304)
T ss_dssp -CEEEEEEEECSSSCCCSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGG-GCTTHHHH
T ss_pred -CEEEEEeccCCceeCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhhhcccccccCCCEEEEEEeCChH-hcchHHHH
Confidence 899999999965 56655568999999999999999999987653211 0 0136899999999988 99999999
Q ss_pred HHHHHcCC-ccEEEEEEecCCC----CccchhhhhHhcHHHHHHhhh-CCCEEEEeCCCcchHHHHHHHHHHHHHHccCC
Q 008647 462 NNFEEEGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQEQENV 535 (558)
Q Consensus 462 ~~~~~~~~-~~~~~~a~Sr~~~----~k~yvq~~l~~~~~~l~~~~~-~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~ 535 (558)
+++++.+. ++++++++||++. .++|+++.+.+..+.+++++. .++.||+||| ++|+++|+++|.+++.+.+ +
T Consensus 207 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~l~~~~~~l~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~~~~~g-~ 284 (304)
T 2bmw_A 207 EEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGP-PPMEEGIDAALSAAAAKEG-V 284 (304)
T ss_dssp HHHHHHCTTTEEEEEEETTTCBCTTSSBCCHHHHHHHTHHHHHHHHTSTTEEEEEEEC-TTHHHHHHHHHHHHHHTTT-C
T ss_pred HHHHHhCCCcEEEEEEEcCCCCCCCCCcceehHHHHHhHHHHHHHhhcCCcEEEEECC-HHHHHHHHHHHHHHHHHcC-c
Confidence 99988764 6789999999753 478999999888777777654 4679999999 8999999999999987654 4
Q ss_pred CHHHHHHHHHHHHHCCCeEEeeC
Q 008647 536 DSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 536 ~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
+ +++++++|+++|||++|||
T Consensus 285 ~---~~~~~~~m~~~~ry~~e~~ 304 (304)
T 2bmw_A 285 T---WSDYQKDLKKAGRWHVETY 304 (304)
T ss_dssp C---HHHHHHHHHHTTCEEEEEC
T ss_pred c---HHHHHHHHHHcCCeEEecC
Confidence 4 6889999999999999999
No 10
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=100.00 E-value=5.9e-39 Score=329.20 Aligned_cols=273 Identities=27% Similarity=0.469 Sum_probs=224.4
Q ss_pred CCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCC
Q 008647 152 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNE 231 (558)
Q Consensus 152 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~ 231 (558)
.++...++.++|++++++++.++++++++|+|+.++ .+.|+||+++.|.++|..
T Consensus 31 ~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~------------------------- 84 (314)
T 1fnb_A 31 KFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEG-EIPYREGQSVGVIPDGED------------------------- 84 (314)
T ss_dssp SBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTT-CCCCCTTCEEEEECSSBC-------------------------
T ss_pred ccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCC-CCCcCCCCEEEEecCCCC-------------------------
Confidence 355677889999999999988888899999999876 489999999999876531
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHH
Q 008647 232 DGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 311 (558)
Q Consensus 232 ~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~ 311 (558)
.+|
T Consensus 85 -----------------------------------------------------------~~g------------------ 87 (314)
T 1fnb_A 85 -----------------------------------------------------------KNG------------------ 87 (314)
T ss_dssp -----------------------------------------------------------TTS------------------
T ss_pred -----------------------------------------------------------cCC------------------
Confidence 000
Q ss_pred HHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCC---CCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCc
Q 008647 312 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDC 388 (558)
Q Consensus 312 l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~---~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~ 388 (558)
.+..+|+|||+|+|.. ..+.++|+|+++.|.++.++.+.|.+|+||+++++|
T Consensus 88 -------------------~~~~~R~ySi~s~p~~~~~~~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~G------ 142 (314)
T 1fnb_A 88 -------------------KPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPG------ 142 (314)
T ss_dssp -------------------SBCCCEEEECCSCSSCTTSSSCEEEEEEECCEEECTTSCEEECHHHHHHHHCCTT------
T ss_pred -------------------CcCCceeEecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCCchhhHhhcCCCC------
Confidence 1236799999999863 257899999987776655555679999999999999
Q ss_pred cEEEEEeeCCCC-cCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcC-CCCCCeEEEEeccCCCCccccHHHHHHHHH
Q 008647 389 SWAPIFIRPSNF-KLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNFEE 466 (558)
Q Consensus 389 ~~v~v~~p~g~F-~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~-~~~~~i~L~~G~R~~~~d~~y~~el~~~~~ 466 (558)
+.|.|.+|.|.| .++.+..+|+||||+|||||||++|++++......+ ...++++||||+|+.+ |++|.+||+++++
T Consensus 143 d~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~el~~l~~ 221 (314)
T 1fnb_A 143 AEVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKE 221 (314)
T ss_dssp CEEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCBTTBCCCSEEEEEEEESSGG-GCCSHHHHHHHHH
T ss_pred CEEEEEeccCCceeCCCCCCCCEEEEeCCccHHHHHHHHHHHHHhccccccCCCCEEEEEecCCHH-HhhhHHHHHHHHH
Confidence 899999999976 455545689999999999999999999987521000 0146799999999998 9999999999988
Q ss_pred cCC-ccEEEEEEecCCC----CccchhhhhHhcHHHHHHhhh-CCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHH
Q 008647 467 EGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKA 540 (558)
Q Consensus 467 ~~~-~~~~~~a~Sr~~~----~k~yvq~~l~~~~~~l~~~~~-~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a 540 (558)
.+. ++++++++||++. .++||++++.+..+.+++.+. .++.||+||| ++|+++|.+.|.+++.+.+ . +|
T Consensus 222 ~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~~~~~g-~---~~ 296 (314)
T 1fnb_A 222 KAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAAEG-I---DW 296 (314)
T ss_dssp HCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHTTSTTEEEEEEEC-TTHHHHHHHHHHHHHHTTT-C---CH
T ss_pred hCCCcEEEEEEECCCCcccCCCceechHHHHHhHHHHHHHHhcCCeEEEEECC-HHHHHHHHHHHHHHHHHhC-c---hH
Confidence 765 6789999999753 478999999887777766554 5789999999 8999999999999998754 3 47
Q ss_pred HHHHHHHHHCCCeEEeeC
Q 008647 541 ESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 541 ~~~~~~l~~~~Ry~~dvw 558 (558)
++++++|+++|||++|||
T Consensus 297 ~~~~~~l~~~~r~~~d~~ 314 (314)
T 1fnb_A 297 IEYKRQLKKAEQWNVEVY 314 (314)
T ss_dssp HHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHCCcEEEecC
Confidence 899999999999999999
No 11
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=100.00 E-value=1e-38 Score=326.95 Aligned_cols=273 Identities=26% Similarity=0.461 Sum_probs=227.7
Q ss_pred CCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCC
Q 008647 152 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNE 231 (558)
Q Consensus 152 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~ 231 (558)
.|....|+.++|+++++++..+...++++|+|+.+. .+.|+||.++.|.++...
T Consensus 27 ~~~p~~~~~~~V~~~~~l~~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~------------------------- 80 (310)
T 3vo2_A 27 KYKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTEG-EIPYREGQSIGIIADGED------------------------- 80 (310)
T ss_dssp SBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTT-CCCCCTTCEEEEECSSBC-------------------------
T ss_pred eecCCCCEEEEEEEEEEccCCCCCccEEEEEEeCCC-CCcccCCCEEEEECCCcC-------------------------
Confidence 466788899999999999987777789999999664 688999999999764310
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHH
Q 008647 232 DGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 311 (558)
Q Consensus 232 ~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~ 311 (558)
..|
T Consensus 81 -----------------------------------------------------------~~g------------------ 83 (310)
T 3vo2_A 81 -----------------------------------------------------------KNG------------------ 83 (310)
T ss_dssp -----------------------------------------------------------TTS------------------
T ss_pred -----------------------------------------------------------CCC------------------
Confidence 000
Q ss_pred HHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCC---CCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCc
Q 008647 312 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDC 388 (558)
Q Consensus 312 l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~---~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~ 388 (558)
-+..+|+|||+|+|.. +++.++|+|+++.|.++.++.+.|.+|+||+++++|
T Consensus 84 -------------------~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G------ 138 (310)
T 3vo2_A 84 -------------------KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPG------ 138 (310)
T ss_dssp -------------------CBCCCEEEECCSCTTTTTTSSSEEEEEEECCEEECTTSCEEECHHHHHHHTCCTT------
T ss_pred -------------------CcCcceeeecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCcchhhHHhcCCCC------
Confidence 1236799999999963 367999999988877777777789999999999999
Q ss_pred cEEEEEeeCCCCc-CCCCCCCCEEEEccCccccchHHHHHHHHHHhhcC-CCCCCeEEEEeccCCCCccccHHHHHHHHH
Q 008647 389 SWAPIFIRPSNFK-LPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNFEE 466 (558)
Q Consensus 389 ~~v~v~~p~g~F~-lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~-~~~~~i~L~~G~R~~~~d~~y~~el~~~~~ 466 (558)
+.|.|.+|.|.|. +|.+..+|+||||+|||||||+||++++......+ ...++++||||+|+.+ |++|.+||+++++
T Consensus 139 d~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~~l~~ 217 (310)
T 3vo2_A 139 ADVKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFLEEHEDYKFSGLAWLFLGVPTSD-SLLYKEELEKMKE 217 (310)
T ss_dssp CEEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSSCCTTCCCCSEEEEEEEESSGG-GCCSHHHHHHHHH
T ss_pred CEEEEEeccCCcccCCCCCCCCEEEEeCCcchhHHHHHHHHHHHhhcccccCCCcEEEEEEecChh-hcccHHHHHHHHH
Confidence 8999999999654 56556789999999999999999999987521100 0136899999999998 9999999999998
Q ss_pred cCC-ccEEEEEEecCCC----CccchhhhhHhcHHHHHHhhh-CCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHH
Q 008647 467 EGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKA 540 (558)
Q Consensus 467 ~~~-~~~~~~a~Sr~~~----~k~yvq~~l~~~~~~l~~~~~-~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a 540 (558)
.++ ++++++++||++. .++||++++.+..+.+++++. .++.||+||| ++|+++|+++|.+++.+++ + ++
T Consensus 218 ~~~~~~~v~~~~sr~~~~~~g~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGp-~~M~~~v~~~L~~~~~~~g-~---~~ 292 (310)
T 3vo2_A 218 MAPDNFRLDFAVSREQTNAAGEKMYIQTRMAEYREELWELLKKDNTYVYMCGL-KGMEKGIDDIMLNLAAKDG-I---DW 292 (310)
T ss_dssp HCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHHTSTTEEEEEEES-TTHHHHHHHHHHHHHHHTT-C---CH
T ss_pred hCCCCEEEEEEECCCCCCCCCcceehHHHHHHHHHHHHHhcccCCcEEEEeCC-HHHHHHHHHHHHHHHHHcC-c---CH
Confidence 875 7789999999864 478999999988888888775 5789999999 8999999999999998764 3 48
Q ss_pred HHHHHHHHHCCCeEEeeC
Q 008647 541 ESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 541 ~~~~~~l~~~~Ry~~dvw 558 (558)
++|+++|+++|||++|||
T Consensus 293 ~~~~~~l~~~~r~~~e~y 310 (310)
T 3vo2_A 293 MQYKKQLKKGEQWNVEVY 310 (310)
T ss_dssp HHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHCCceEEecC
Confidence 899999999999999999
No 12
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=100.00 E-value=3.4e-37 Score=326.17 Aligned_cols=274 Identities=25% Similarity=0.399 Sum_probs=224.4
Q ss_pred CCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCC
Q 008647 153 FDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNED 232 (558)
Q Consensus 153 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~ 232 (558)
+....|+.++|+++++++.+++.+++++|+|++++..+.|+||+++.|.+++..
T Consensus 117 ~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~-------------------------- 170 (402)
T 2b5o_A 117 YRPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEGDLRYLEGQSIGIIPPGED-------------------------- 170 (402)
T ss_dssp SCSSSCEEEEEEEEEECSCTTCCSCEEEEEEECTTSCCCCCTTCEEEEECSSEE--------------------------
T ss_pred ccCCCCEEEEEEEEEEcCCCCCCCcEEEEEEECCCCCCCcCCCCEEEEEecCCC--------------------------
Confidence 556778999999999999888888999999998864589999999999876521
Q ss_pred CCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHH
Q 008647 233 GTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVM 312 (558)
Q Consensus 233 ~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l 312 (558)
.+|
T Consensus 171 ----------------------------------------------------------~~g------------------- 173 (402)
T 2b5o_A 171 ----------------------------------------------------------KNG------------------- 173 (402)
T ss_dssp ----------------------------------------------------------TTT-------------------
T ss_pred ----------------------------------------------------------cCC-------------------
Confidence 000
Q ss_pred HhCCCCCCChhHHHHhhCCCCCCcccccCCCCCC---CCCeEEEEEEEEEccCCC-CCcccCcccHHhhhcCCCCCCCCc
Q 008647 313 AEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPT-GRIHKGVCSTWMKNAIPLEGNGDC 388 (558)
Q Consensus 313 ~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~---~~~~i~l~v~vv~~~~~~-~~~~~G~~S~~L~~l~~G~~~~~~ 388 (558)
.+..+|+|||+|+|.. +++.++|+|+++.|.+|. ++...|.+|+||+++++|.
T Consensus 174 ------------------~~~~~R~ySIas~p~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~G~----- 230 (402)
T 2b5o_A 174 ------------------KPHKLRLYSIASTRHGDMEDNKTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPVGT----- 230 (402)
T ss_dssp ------------------EECCCEEEEBCSCTTTTTTSSCEEEEEEECCEEECTTTCCEEECHHHHHHHTCCTTC-----
T ss_pred ------------------CccCceeeeccCCCccccCCCCEEEEEEEEeeecccccCcCCCCchhHHHhhCCCCC-----
Confidence 1136799999999863 257899999987665532 3345799999999999982
Q ss_pred cEEEEEeeCCCC-cCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcC-CCCCCeEEEEeccCCCCccccHHHHHHHHH
Q 008647 389 SWAPIFIRPSNF-KLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNFEE 466 (558)
Q Consensus 389 ~~v~v~~p~g~F-~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~-~~~~~i~L~~G~R~~~~d~~y~~el~~~~~ 466 (558)
+.|.|.+|.|.| .++.+..+|+||||+|||||||++|++++......+ ...++++||||||+.+ |++|.+||+++++
T Consensus 231 d~v~v~gP~G~~~~l~~~~~~~vvlIAgGtGIaP~~s~l~~l~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~eL~~l~~ 309 (402)
T 2b5o_A 231 DDVKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKEQHEDYKFKGKAWLIFGVPYTA-NILYKDDFEKMAA 309 (402)
T ss_dssp CCEEEEEEECSTTCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCCSSCCCCSEEEEEEEESSGG-GCTTHHHHHHHHH
T ss_pred ceEEEEcccCCcccCCccCCCCEEEEEcccCHHHHHHHHHHHHHhccccccccCCEEEEEecCCHH-HhHHHHHHHHHHH
Confidence 389999999965 566555689999999999999999999887521000 0136899999999998 9999999999998
Q ss_pred cCC-ccEEEEEEecCCC----CccchhhhhHhcHHHHHHhhh-CCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHHH
Q 008647 467 EGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKA 540 (558)
Q Consensus 467 ~~~-~~~~~~a~Sr~~~----~k~yvq~~l~~~~~~l~~~~~-~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a 540 (558)
.+. ++++++++||++. .++||++++.+..+.+++++. .++.||+||| ++|+++|.++|.+++.+.+. .+
T Consensus 310 ~~~~~~~v~~~~S~~~~~~~g~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGP-~~M~~~v~~~L~~~g~~~g~----~~ 384 (402)
T 2b5o_A 310 ENPDNFRLTYAISREQKTADGGKVYVQSRVSEYADELFEMIQKPNTHVYMCGL-KGMQPPIDETFTAEAEKRGL----NW 384 (402)
T ss_dssp HCTTTEEEEEEETTTCBCTTSCBCCHHHHHHHTHHHHHHHHTSTTEEEEEEEC-GGGHHHHHHHHHHHHHHTTC----CH
T ss_pred hCCCcEEEEEEECCCCcccCCCccchHHHHHHhHHHHHHHhccCCcEEEEECC-HHHHHHHHHHHHHHHHHcCc----hH
Confidence 775 6789999999753 478999999988778877774 5789999999 89999999999999988754 47
Q ss_pred HHHHHHHHHCCCeEEeeC
Q 008647 541 ESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 541 ~~~~~~l~~~~Ry~~dvw 558 (558)
.+++++|+++|||++|||
T Consensus 385 ~~~~~~m~~~~Ry~~e~~ 402 (402)
T 2b5o_A 385 EEMRRSMKKEHRWHVEVY 402 (402)
T ss_dssp HHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHCCCEEEecC
Confidence 899999999999999999
No 13
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=100.00 E-value=3.1e-36 Score=308.93 Aligned_cols=278 Identities=24% Similarity=0.340 Sum_probs=217.6
Q ss_pred CCCCCceeEEEEeeeecCCCCCCCc---------EEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccE
Q 008647 153 FDIHHPCRVNVAVRRELHKPDSDRS---------CIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELL 223 (558)
Q Consensus 153 ~~~~~~~~~~v~~~~~l~~~~~~~~---------~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~ 223 (558)
+....++.++|+++++|++.++.++ +++|+|+.++..+.|+||+++.|.++|....
T Consensus 16 ~~~~~~~~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~--------------- 80 (314)
T 2rc5_A 16 FKKSNPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHSAYPYVIGQSGGVIPPGEDPE--------------- 80 (314)
T ss_dssp BBTTBCEEEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTTTCCCCTTCEEEEECSSBCHH---------------
T ss_pred CCCCCCEEEEEEEeEEcCCccccccccccccCceEEEEEEeCCCCcCcccCCCEEEEECCCCccc---------------
Confidence 4556788999999999998766666 9999999876558999999999998774200
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhh
Q 008647 224 FSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVA 303 (558)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~ 303 (558)
+. + ..+
T Consensus 81 ---------g~------------~--------------------------------------~~~--------------- 86 (314)
T 2rc5_A 81 ---------KK------------A--------------------------------------KGL--------------- 86 (314)
T ss_dssp ---------HH------------H--------------------------------------TTC---------------
T ss_pred ---------cC------------c--------------------------------------cch---------------
Confidence 00 0 000
Q ss_pred cCCCHHHHHHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCC---CCCeEEEEEEEEEccCCCCCc-ccCcccHHhhhc
Q 008647 304 SQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPTGRI-HKGVCSTWMKNA 379 (558)
Q Consensus 304 ~~~~~~d~l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~---~~~~i~l~v~vv~~~~~~~~~-~~G~~S~~L~~l 379 (558)
.+| ++.+|+|||+|+|.. +++.++|+|+++.+.++.|+. +.|.+|+||+++
T Consensus 87 ---------~~~----------------~~~~R~ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~l 141 (314)
T 2rc5_A 87 ---------ADV----------------GYTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDL 141 (314)
T ss_dssp ---------SCC----------------BCCCEEEECCSCTTCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHTC
T ss_pred ---------hhc----------------CCCceeeeccCCccccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhcC
Confidence 011 147899999999852 357899999987665544443 469999999999
Q ss_pred CCCCCCCCccEEEEEeeCCCCc-CCC-CCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCcccc
Q 008647 380 IPLEGNGDCSWAPIFIRPSNFK-LPA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIY 457 (558)
Q Consensus 380 ~~G~~~~~~~~v~v~~p~g~F~-lp~-~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y 457 (558)
++| +.|.|.+|.|.|. ++. +..+|+||||+|||||||++|++++.... .....++++||||+|+.+ |++|
T Consensus 142 ~~G------d~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~l~~~~-~~~~~~~v~l~~g~r~~~-d~~~ 213 (314)
T 2rc5_A 142 KPG------DEVTMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHK-LIKFTGNITLVYGAPYSD-ELVM 213 (314)
T ss_dssp CTT------CEEEEEEEECSSSCCCSSCBCSCEEEEEEGGGGHHHHHHHHHHHTTC-SSCBCSCEEEEEEESSGG-GSCS
T ss_pred CCc------CEEEEEeccCCceeCCCCCCCCCEEEEECCccHHHHHHHHHHHHHhc-ccCCCCcEEEEEEeCCHH-HHhH
Confidence 999 8999999999764 454 35689999999999999999999987521 001246899999999999 9999
Q ss_pred HHHHHHHHHcCCccEEEEEEecCCC-----CccchhhhhHhcHHHHHHhhhCCCEEEEe-CCCcchHHHHHHHHHHHHHH
Q 008647 458 EDELNNFEEEGVISELILAFSREGS-----QKEYVQHKMMDKAAQLWSLLSKEGYLYVC-GDAKGMARDVHRTLHTIVQE 531 (558)
Q Consensus 458 ~~el~~~~~~~~~~~~~~a~Sr~~~-----~k~yvq~~l~~~~~~l~~~~~~~~~iyvC-Gp~~~M~~~v~~~L~~i~~~ 531 (558)
.+||+++++.+.++++++++||++. .++||++++.+..+.+.+.+.+...+|+| || ++|+++|++.|.+++.
T Consensus 214 ~~el~~l~~~~~~~~~~~~~s~~~~~~~~g~~~~v~~~l~~~~~~l~~~~~~~~~~yvCGGp-~~m~~~v~~~L~~~g~- 291 (314)
T 2rc5_A 214 MDYLKGLESKHKNFKLITAISREEKNSFDGGRMYISHRVREQAEAVKKILNGGGRFYICGGP-KGMEKGVIEEIQKISG- 291 (314)
T ss_dssp HHHHHHHHHHHSSEEEEEEETTTCBCTTTSSBCCHHHHHHHTHHHHHHHHHHTCEEEEEESS-TTTHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHhCCcEEEEEEECCCCCcccCCCceehhHHHHHhHHHHHHHhhcCCeEEEeCCc-HHHHHHHHHHHHHHHh-
Confidence 9999999887557789999999743 36899999988777776655333445999 99 8999999999999875
Q ss_pred ccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 532 QENVDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 532 ~~~~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
.++ .++.|+.+|+++|||++|+|
T Consensus 292 -~~i---~~e~f~~~l~~~gr~~~e~~ 314 (314)
T 2rc5_A 292 -NTG---TYEEFKHHLEGAHQLFVETY 314 (314)
T ss_dssp -CCS---CHHHHHHHHHHTTCEEEEEC
T ss_pred -ccc---hHHHHHHHHHHCCCEEEecC
Confidence 333 36889999999999999999
No 14
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=100.00 E-value=5.9e-36 Score=306.49 Aligned_cols=274 Identities=23% Similarity=0.382 Sum_probs=218.1
Q ss_pred CCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCCC
Q 008647 153 FDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNED 232 (558)
Q Consensus 153 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~ 232 (558)
++...++.++|++.+.++.++...++++++|..+. ...|+||.++.|..+...
T Consensus 23 ~~~~~~~~~~V~~~~~~t~~~~~~~v~~~~l~~~~-~~~~~pGQ~v~l~~~~~~-------------------------- 75 (311)
T 3lo8_A 23 YKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGEN-------------------------- 75 (311)
T ss_dssp BBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTT-SSCCCTTCEEEEECSSBC--------------------------
T ss_pred cCCCCCeEEEEEeeEeccCCCCCCccEEEEEeCCC-CCcccCCCEEEEeCCCCc--------------------------
Confidence 45567789999999999965555689999999875 589999999988653320
Q ss_pred CCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHHH
Q 008647 233 GTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVM 312 (558)
Q Consensus 233 ~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~l 312 (558)
.. ..|
T Consensus 76 ~~--------------------------------------------------------~~g------------------- 80 (311)
T 3lo8_A 76 PK--------------------------------------------------------KPG------------------- 80 (311)
T ss_dssp TT--------------------------------------------------------STT-------------------
T ss_pred cc--------------------------------------------------------cCC-------------------
Confidence 00 000
Q ss_pred HhCCCCCCChhHHHHhhCCCCCCcccccCCCCCC---CCCeEEEEEEEEEccCCCC----CcccCcccHHhhhcCCCCCC
Q 008647 313 AEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPTG----RIHKGVCSTWMKNAIPLEGN 385 (558)
Q Consensus 313 ~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~---~~~~i~l~v~vv~~~~~~~----~~~~G~~S~~L~~l~~G~~~ 385 (558)
.+..+|+|||+|+|.. +++.++|+|+++.+..+.. +...|.+|+||+++++|
T Consensus 81 ------------------~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~G--- 139 (311)
T 3lo8_A 81 ------------------APQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPG--- 139 (311)
T ss_dssp ------------------CBCCCEEEEBCSCTTTTTTSSSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTT---
T ss_pred ------------------CCCCceeeEecCCCcccCCCCCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCCc---
Confidence 1246899999999964 2478999999764433221 12569999999999999
Q ss_pred CCccEEEEEeeCCCCcCCC--CCCCCEEEEccCccccchHHHHHHHHHHhhcC-CCCCCeEEEEeccCCCCccccHHHHH
Q 008647 386 GDCSWAPIFIRPSNFKLPA--NPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELN 462 (558)
Q Consensus 386 ~~~~~v~v~~p~g~F~lp~--~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~-~~~~~i~L~~G~R~~~~d~~y~~el~ 462 (558)
+.|.+.+|.|.|.+.. +..+|+||||+|||||||++|++++......+ ...++++||||+|+.+ |++|.+||+
T Consensus 140 ---d~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~l~~g~r~~~-d~~~~~el~ 215 (311)
T 3lo8_A 140 ---DKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSD-SLLYDEEFT 215 (311)
T ss_dssp ---CEEEEEEEECCTTCCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTEECTTCCCCSEEEEEEEESSGG-GCSSHHHHH
T ss_pred ---CEEEEEeccCCcccCCCcCCCCCEEEEECCEEHHHHHHHHHHHHHhccccccCCCCEEEEEecCChH-HhhHHHHHH
Confidence 8999999999776543 35689999999999999999999987521100 0136799999999998 999999999
Q ss_pred HHHHcCC-ccEEEEEEecCCC----CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCH
Q 008647 463 NFEEEGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDS 537 (558)
Q Consensus 463 ~~~~~~~-~~~~~~a~Sr~~~----~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~ 537 (558)
++++.+. .+++++++||++. .++||++.+.+..+.+++++..++.||+||| ++|+++|+++|.+++.+.+
T Consensus 216 ~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~~~~~g---- 290 (311)
T 3lo8_A 216 SYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGL-KGMMPGIQDTLKKVAERRG---- 290 (311)
T ss_dssp HHHHHCTTTEEEEEEETTTC-------CCHHHHHHHTHHHHHHHHHTTCEEEEEEC-GGGHHHHHHHHHHHHHHTT----
T ss_pred HHHHhCCCcEEEEEEECCCCcccCCCcceehHHHHHHHHHHHHhhcCCcEEEEECC-HHHHHHHHHHHHHHHHhcc----
Confidence 9998875 7789999999864 4789999999887777777777899999999 8999999999999997765
Q ss_pred HHHHHHHHHHHHCCCeEEeeC
Q 008647 538 SKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 538 ~~a~~~~~~l~~~~Ry~~dvw 558 (558)
++|++++++|+++|||++|||
T Consensus 291 ~~~~~~~~~l~~~~ry~~e~y 311 (311)
T 3lo8_A 291 ESWDQKLAQLKKNKQWHVEVY 311 (311)
T ss_dssp CCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHCCcEEEecC
Confidence 358899999999999999999
No 15
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=100.00 E-value=2.3e-35 Score=302.61 Aligned_cols=291 Identities=21% Similarity=0.346 Sum_probs=210.5
Q ss_pred CCCCCCceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCCHHHHHHHHHHhCCCCccEEEEecCCC
Q 008647 152 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNE 231 (558)
Q Consensus 152 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~ 231 (558)
-|..++|+.++|+++.+|+.++...+|+||+|+.++ .+.|.+|..++|.|+..+.. ...+ .
T Consensus 9 ~~~~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~~-~~~~~~GQ~~~i~~~~~~~~-----~~~~-------------~ 69 (316)
T 3jqq_A 9 LYTVKNPLKCKIVDKINLVRPNSPNEVYHLEINHNG-LFKYLEGHTCGIIPYYNELD-----NNPN-------------N 69 (316)
T ss_dssp SSCSSSCEEEEEEEEEECSCTTCSCCEEEEEEECTT-CCCCCTTCEEEECTTCC--------------------------
T ss_pred eecCCCCEEEEEEeeEEccCCCCCCceEEEEEeCCC-CcceecCcEeEEECCCcccc-----cccc-------------c
Confidence 366789999999999999988878899999999865 69999999999999876422 0000 0
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHhhhccccCCccHHHHHHHHHhCCCHhHHHHHHHccCCCchhHHHHHHhhcCCCHHHH
Q 008647 232 DGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 311 (558)
Q Consensus 232 ~~~~~~~~~~~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~L~~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~~d~ 311 (558)
+ . +-| .+. ..+..++.. ..++
T Consensus 70 --~-----~--~~~-----~~~----------------~~~~~~~~h---------------------------~~~~-- 90 (316)
T 3jqq_A 70 --Q-----I--NKD-----HNI----------------INTTNHTNH---------------------------NNIA-- 90 (316)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --c-----c--ccc-----ccc----------------ccccccccc---------------------------cccc--
Confidence 0 0 000 000 000000000 0000
Q ss_pred HHhCCCCCCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCC---CCCcccCcccHHhhhcCCCCCCCCc
Q 008647 312 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTP---TGRIHKGVCSTWMKNAIPLEGNGDC 388 (558)
Q Consensus 312 l~~f~~~~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~---~~~~~~G~~S~~L~~l~~G~~~~~~ 388 (558)
. ...- +...+|+|||+|+|.. +.++|+|+++.|..+ .++.+.|.+|+||+++++|
T Consensus 91 -------~------~~~~-g~~~~R~ySIaS~p~~--~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~G------ 148 (316)
T 3jqq_A 91 -------L------SHIK-KQRCARLYSISSSNNM--ENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKIN------ 148 (316)
T ss_dssp --------------------CCCCEEEEBCSCTTS--SSEEEEEECCBC---------CCBCHHHHHHHTCCTT------
T ss_pred -------c------ccCC-CcccceeeecccCCCC--CeEEEEEEEEEecccccccCcCCCCchhHHHhhCCCC------
Confidence 0 0011 4568999999999964 689999998765432 1234579999999999999
Q ss_pred cEEEEEeeCCCCcCCCC---CCCCEEEEccCccccchHHHHHHHHHHhhc------CCCCCCeEEEEeccCCCCccccHH
Q 008647 389 SWAPIFIRPSNFKLPAN---PSVPIIMVGPGTGLAPFRGFLQERMALKQD------GAQLGPALLFFGCRNRRMDFIYED 459 (558)
Q Consensus 389 ~~v~v~~p~g~F~lp~~---~~~plilIa~GtGIAP~~s~l~~~~~~~~~------~~~~~~i~L~~G~R~~~~d~~y~~ 459 (558)
+.|.|.+|.|.|.++.+ ..+|+||||+|||||||+||++++...... +...++++||||+|+.+ |++|.+
T Consensus 149 d~v~v~gP~G~f~l~~~~~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~ 227 (316)
T 3jqq_A 149 DDIYLTGAHGYFNLPNDAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNED-SILYLN 227 (316)
T ss_dssp CEEEEEEEECCCCCCTTHHHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGG-GCTTHH
T ss_pred CEEEEEecCCceEcCCcccCCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHH-HhhcHH
Confidence 89999999999999865 368999999999999999999998752110 01247899999999999 999999
Q ss_pred HHHHHHHcCC-ccEEEEEEecCCC---CccchhhhhHhcHHHHHHhhh-CCCEEEEeCCCcchHHHHHHHHHHHHHHccC
Q 008647 460 ELNNFEEEGV-ISELILAFSREGS---QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQEQEN 534 (558)
Q Consensus 460 el~~~~~~~~-~~~~~~a~Sr~~~---~k~yvq~~l~~~~~~l~~~~~-~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~ 534 (558)
||+++++... ++++++++||++. .++||++.+.+....+++++. .++.||+||| ++|++++.++|.+.. .
T Consensus 228 eL~~l~~~~~~~~~~~~~~s~~~~~~g~~g~V~~~l~~~~~~~~~~l~~~~~~vyvCGP-~~m~~~v~~~l~~~G----~ 302 (316)
T 3jqq_A 228 ELEYFQKMYPNNINIHYVFSYKQNSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGK-KSIRYKVMDILKSHD----Q 302 (316)
T ss_dssp HHHHHHHHCTTTEEEEEEEGGGCC---CBCCHHHHHHHTHHHHHHHHHHTCCEEEEEEC-STHHHHHHHHHHC-------
T ss_pred HHHHHHHhCCCcEEEEEEECCCcccCCCccchhHHHHHhHHHHHHhhccCCeEEEEeCC-HHHHHHHHHHHHHcC----C
Confidence 9999998765 6789999999853 578999999988878877664 6899999999 899999988887654 2
Q ss_pred CCHHHHHHHHHHHHHCCCeEEeeC
Q 008647 535 VDSSKAESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 535 ~~~~~a~~~~~~l~~~~Ry~~dvw 558 (558)
+++ ...+|++.|+|
T Consensus 303 ~~~----------v~~~rih~E~f 316 (316)
T 3jqq_A 303 FDE----------KKKKRVHVEVY 316 (316)
T ss_dssp -CH----------HHHTTEEEEEC
T ss_pred Ccc----------cccccEEEEeC
Confidence 221 34578999886
No 16
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=99.95 E-value=6.3e-28 Score=238.97 Aligned_cols=185 Identities=18% Similarity=0.242 Sum_probs=152.7
Q ss_pred CCChhHHHHhhCCC-CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEEEEee
Q 008647 319 TPPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIR 396 (558)
Q Consensus 319 ~~~~~~~l~~~~p~-~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~-~l~~G~~~~~~~~v~v~~p 396 (558)
.+.+|||+.+.+|. ...|+|||+|.|.. .+.++|+|+++ ..|.+|+||+ ++++| +.|.|.+|
T Consensus 43 ~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~i~vk~~---------~~G~~s~~l~~~l~~G------d~v~v~gP 106 (250)
T 1tvc_A 43 KFEPGQFMDLTIPGTDVSRSYSPANLPNP-EGRLEFLIRVL---------PEGRFSDYLRNDARVG------QVLSVKGP 106 (250)
T ss_dssp SCCSCCEEEECTTSCSSSEEECCBCCSSS-SCCEEEEECCC---------TTSSSHHHHHHHSSSS------SEEEEEEE
T ss_pred CcCCCcEEEEEeCCCccccccccCCCCCC-CCeEEEEEEEC---------CCCCchHHHHhcCCCC------CEEEEEcC
Confidence 45789999998676 57899999999864 57899999843 2599999996 79999 89999999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.|.++.+..+++||||+|||||||++|++++... + ...+++|+||+|+.+ |++|.+||+++++....++++++
T Consensus 107 ~G~~~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~---~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 181 (250)
T 1tvc_A 107 LGVFGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEW---T-APNETRIYFGVNTEP-ELFYIDELKSLERSMRNLTVKAC 181 (250)
T ss_dssp ECCCSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHH---T-CCSCEEEEEECSSST-TCCCHHHHHHHHHHSSSCEEEEC
T ss_pred ccccccCccCCceEEEEEeccCHHHHHHHHHHHHhc---C-CCceEEEEEEeCCHH-HhhhHHHHHHHHHhCCCeEEEEE
Confidence 999998765558999999999999999999998762 2 457899999999999 99999999999887777889999
Q ss_pred EecCCC----CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 477 FSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 477 ~Sr~~~----~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+|++++ .+++|++.+.+.. .+. ..+..||+||| ++|++++++.|.+..
T Consensus 182 ~s~~~~~~~g~~g~v~~~l~~~~---~~~-~~~~~vyvCGp-~~m~~~v~~~l~~~G 233 (250)
T 1tvc_A 182 VWHPSGDWEGEQGSPIDALREDL---ESS-DANPDIYLCGP-PGMIDAACELVRSRG 233 (250)
T ss_dssp CSSCSSCCSSSSSSSSHHHHHHH---HHS-SSSSEEEEESS-HHHHHHHHHHHHHHC
T ss_pred eccCCCCcCCccceehHHHHhhh---hcc-cCCcEEEEeCC-HHHHHHHHHHHHHcC
Confidence 998633 4678887765422 111 24689999999 899999999887654
No 17
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=99.94 E-value=1.2e-27 Score=234.11 Aligned_cols=182 Identities=15% Similarity=0.169 Sum_probs=146.5
Q ss_pred CCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHH-hhhcCCCCCCCCccEEEEEeeC
Q 008647 319 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTW-MKNAIPLEGNGDCSWAPIFIRP 397 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~-L~~l~~G~~~~~~~~v~v~~p~ 397 (558)
.+.+|||+.+.+|....|+|||+|+|.. ++.++|+|+++. .|.+|++ +.++++| +.|.+.+|.
T Consensus 29 ~~~pGq~v~l~~~~~~~R~ySi~s~~~~-~~~l~l~i~~~~---------~G~~s~~~~~~l~~G------d~v~v~gP~ 92 (232)
T 1qfj_A 29 SFRAGQYLMVVMDERDKRPFSMASTPDE-KGFIELHIGASE---------INLYAKAVMDRILKD------HQIVVDIPH 92 (232)
T ss_dssp CCCTTCEEEEESSSSCEEEEECCSCTTS-TTCEEEEEC---------------CCHHHHHHHHHH------SEEEEEEEE
T ss_pred CcCCCCEEEEECCCCceeeeecCCCCCC-CCcEEEEEEEcc---------CCchhHHHHHhCCCC------CEEEEeCCc
Confidence 4578999999878778999999999865 578999998653 3666765 6669999 899999999
Q ss_pred CCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEE
Q 008647 398 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 477 (558)
Q Consensus 398 g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~ 477 (558)
|.|.++.+..+++||||+|||||||++|++++... + ...+++|+||+|+.+ |++|.+||+++++.+.+++++.++
T Consensus 93 G~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~---~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 167 (232)
T 1qfj_A 93 GEAWLRDDEERPMILIAGGTGFSYARSILLTALAR---N-PNRDITIYWGGREEQ-HLYDLCELEALSLKHPGLQVVPVV 167 (232)
T ss_dssp CSCCCCSCSSSCEEEEEETTCHHHHHHHHHHHHHH---C-TTCCEEEEEEESSGG-GCTTHHHHHHHHHHCTTEEEEEEE
T ss_pred cceEeCCCCCCcEEEEEecccHhHHHHHHHHHHhc---C-CCCcEEEEEeeCCHH-HhhhHHHHHHHHHHCCCeEEEEEE
Confidence 99988765568999999999999999999998762 2 457899999999999 999999999999877778899999
Q ss_pred ecCCC----CccchhhhhHhcHHHHHHhh-hCCCEEEEeCCCcchHHHHHHHH-HHH
Q 008647 478 SREGS----QKEYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTL-HTI 528 (558)
Q Consensus 478 Sr~~~----~k~yvq~~l~~~~~~l~~~~-~~~~~iyvCGp~~~M~~~v~~~L-~~i 528 (558)
|++++ .++++++.+.+. +. ..+..+|+||| ++|++++++.| .+.
T Consensus 168 s~~~~~~~g~~g~v~~~~~~~------~~~~~~~~vyvCGp-~~m~~~v~~~l~~~~ 217 (232)
T 1qfj_A 168 EQPEAGWRGRTGTVLTAVLQD------HGTLAEHDIYIAGR-FEMAKIARDLFCSER 217 (232)
T ss_dssp SSCCTTCCSEESCHHHHHHHH------CSCCTTCEEEEESC-HHHHHHHHHHHHHHS
T ss_pred cCCCCCcCCceeeHHHHHHHh------cCCccccEEEEECC-HHHHHHHHHHHHHHc
Confidence 98754 246777655432 11 14679999999 89999999888 553
No 18
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=99.94 E-value=2.7e-27 Score=239.46 Aligned_cols=182 Identities=18% Similarity=0.307 Sum_probs=141.2
Q ss_pred CCCcccccCCCCCCCCCeEEEEEEEEEcc--C--CC--CCcccCcccHHhhhcCCCCCCCCccEEEEEeeCCCCcCCCCC
Q 008647 333 LQPRYYSISSSPRFAPDRVHVTCALVYGP--T--PT--GRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANP 406 (558)
Q Consensus 333 ~~pR~YSIaS~p~~~~~~i~l~v~vv~~~--~--~~--~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F~lp~~~ 406 (558)
..+|+|||+|+|.. .+.++|+|+++... + +. .+...|.+|+||+++++| +.|.|.+|.|.|.++. .
T Consensus 84 ~~~R~ySi~s~~~~-~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~G------d~v~v~gP~G~f~~~~-~ 155 (290)
T 2r6h_A 84 ETVRAYSMANYPAE-GNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPG------DKVMMSGPYGDFHIQD-T 155 (290)
T ss_dssp CEEEEEECCSCTTC-CSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCTT------CEEEEEEEECCCCCCS-S
T ss_pred CcceeeeccCCCCC-CCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCCC------CEEEEEecccCCcCCC-C
Confidence 45799999999965 57899999863210 0 00 012369999999999999 8999999999998863 4
Q ss_pred CCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEEEecCCC----
Q 008647 407 SVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS---- 482 (558)
Q Consensus 407 ~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~---- 482 (558)
.+++||||+|||||||+||+++++.. .....+++|+||+|+.+ |++|.+||+++++.+.++++++++||+..
T Consensus 156 ~~~~vliagGtGitP~~s~l~~~~~~---~~~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~ 231 (290)
T 2r6h_A 156 DAEMLYIGGGAGMAPLRAQILHLFRT---LKTGRKVSYWYGARSKN-EIFYEEDFREIEREFPNFKFHIALSDPQPEDNW 231 (290)
T ss_dssp SCEEEEEEEGGGHHHHHHHHHHHHHT---SCCCSCEEEEEEESSGG-GCCSHHHHHHHHHHCTTEEEEEEESSCCGGGCC
T ss_pred CCeEEEEECccCHHHHHHHHHHHHHh---cCCCCcEEEEEEcCCHH-HHHHHHHHHHHHHhCCCeEEEEEEccCCcccCC
Confidence 67999999999999999999988762 11357899999999998 99999999999987777899999998642
Q ss_pred --CccchhhhhHhcHHHHHHhh-hCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 483 --QKEYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 483 --~k~yvq~~l~~~~~~l~~~~-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
.++++++.+.+.. +.+.. ..++.||+||| ++|+++|++.|.+..
T Consensus 232 ~g~~g~v~~~~~~~~--l~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~G 278 (290)
T 2r6h_A 232 TGYVGFIHQVIYDNY--LKDHDAPEDIEYYMCGP-GPMANAVKGMLENLG 278 (290)
T ss_dssp CSCBSCHHHHHHHHT--TTTCSCGGGEEEEEECC-HHHHHHHHHHHHHHT
T ss_pred CCeeEecCHHHHHhH--HhhccCcCCcEEEEECC-HHHHHHHHHHHHHcC
Confidence 2567776553211 11111 13568999999 899999999987654
No 19
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=99.94 E-value=3.1e-27 Score=232.85 Aligned_cols=184 Identities=18% Similarity=0.227 Sum_probs=148.5
Q ss_pred CCChhHHHHhhCC--C-CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEe
Q 008647 319 TPPIGVFFAAVAP--H-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 319 ~~~~~~~l~~~~p--~-~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~ 395 (558)
...+|||+.+.+| . ...|+|||+|.|.. .+.++|+|+++ ..|.+|+||+++++| +.|.+.+
T Consensus 41 ~~~pGq~v~l~~~~~g~~~~R~ysi~s~~~~-~~~~~l~vk~~---------~~G~~S~~l~~l~~G------d~v~v~g 104 (243)
T 2eix_A 41 GLPIGQHMSVKATVDGKEIYRPYTPVSSDDE-KGYFDLIIKVY---------EKGQMSQYIDHLNPG------DFLQVRG 104 (243)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEECCCSCTTC-CSEEEEEEECC---------TTCHHHHHHHTCCTT------CEEEEEE
T ss_pred CcCCceEEEEEEeeCCCEEEeeeeecCCCCC-CCEEEEEEEEc---------CCCCcchHhhcCCCC------CEEEEEC
Confidence 3578999998755 1 35799999999864 57899999843 259999999999999 8999999
Q ss_pred eCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEE
Q 008647 396 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 475 (558)
Q Consensus 396 p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~ 475 (558)
|.|.|.++.+..+++||||+|||||||++|++++.. ......+++|+||+|+.+ |++|.+||+++++.+.+++++.
T Consensus 105 P~G~f~~~~~~~~~~vliagG~GiaP~~~~l~~l~~---~~~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 180 (243)
T 2eix_A 105 PKGQFDYKPNMVKEMGMIAGGTGITPMLQVARAIIK---NPKEKTIINLIFANVNED-DILLRTELDDMAKKYSNFKVYY 180 (243)
T ss_dssp EECSCCCCTTSSSEEEEEEEGGGHHHHHHHHHHHHT---CTTCCCEEEEEEEEEEGG-GCTTHHHHHHHHHHCTTEEEEE
T ss_pred CeEEEEeCCCCCcEEEEEecCccHHHHHHHHHHHHh---CCCCCcEEEEEEEcCCHH-HhhHHHHHHHHHHHCCCeEEEE
Confidence 999999886556899999999999999999999874 111357899999999998 9999999999988777788999
Q ss_pred EEecCCC----CccchhhhhHhcHHHHHHhhh---CCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 476 AFSREGS----QKEYVQHKMMDKAAQLWSLLS---KEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 476 a~Sr~~~----~k~yvq~~l~~~~~~l~~~~~---~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
++|++++ .++++++.+. .+.+. .+..||+||| ++|++++++.|.+.+
T Consensus 181 ~~s~~~~~~~g~~g~v~~~~l------~~~~~~~~~~~~vy~CGp-~~m~~~v~~~l~~~G 234 (243)
T 2eix_A 181 VLNNPPAGWTGGVGFVSADMI------KQHFSPPSSDIKVMMCGP-PMMNKAMQGHLETLG 234 (243)
T ss_dssp EEEECCTTCCSEESSCCHHHH------HHHSCCTTSSEEEEEESS-HHHHHHHHHHHHHHT
T ss_pred EeCCCCccccCcCCccCHHHH------HHhcCCCCCCeEEEEECC-HHHHHHHHHHHHHcC
Confidence 9998643 2467764321 12222 3568999999 899999999987654
No 20
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=99.94 E-value=9.4e-27 Score=230.09 Aligned_cols=189 Identities=19% Similarity=0.207 Sum_probs=150.6
Q ss_pred CCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEE-
Q 008647 319 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF- 394 (558)
Q Consensus 319 ~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~- 394 (558)
.+.+|||+.+.+|. ...|+|||+|+|.. +.++|+|+.+ ..|.+|+||+++++| +.|.+.
T Consensus 30 ~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~--~~l~~~v~~~---------~~G~~s~~l~~l~~G------d~v~v~~ 92 (248)
T 1fdr_A 30 PFTAGQFTKLGLEIDGERVQRAYSYVNSPDN--PDLEFYLVTV---------PDGKLSPRLAALKPG------DEVQVVS 92 (248)
T ss_dssp CCCTTCEEEEEECC---CEEEEEECCSCTTC--SSEEEEEECC---------TTCSSHHHHHTCCTT------CEEEEES
T ss_pred CcCCCCcEEEEccCCCCeeeeeecccCCCCC--CcEEEEEEEe---------CCCchhhHHHhCCCc------CEEEEec
Confidence 46799999987663 46799999999863 7899998843 259999999999999 899999
Q ss_pred eeCCCCcCCCCC-CCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcC-CccE
Q 008647 395 IRPSNFKLPANP-SVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG-VISE 472 (558)
Q Consensus 395 ~p~g~F~lp~~~-~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~-~~~~ 472 (558)
+|.|.|.++... .+++||||+|||||||++|++++.. .+ ...+++|+||+|+.+ |++|.+||+++++.. .+++
T Consensus 93 gP~G~f~l~~~~~~~~~vliagG~GitP~~~~l~~l~~---~~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~ 167 (248)
T 1fdr_A 93 EAAGFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKD---LD-RFKNLVLVHAARYAA-DLSYLPLMQELEKRYEGKLR 167 (248)
T ss_dssp SCBCCCSGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCS---CT-TCSEEEEEEEESSGG-GCTTHHHHHHHHHHTTTSEE
T ss_pred CCcceeEcCCCCCCceEEEEEecccHHHHHHHHHHHHh---hC-CCCcEEEEEEcCCHH-HhhHHHHHHHHHHhCcCcEE
Confidence 999999887543 5799999999999999999998643 11 357899999999998 999999999998764 4668
Q ss_pred EEEEEecCCC---CccchhhhhHhcH-HHHHHh-h-hCCCEEEEeCCCcchHHHHHHHH-HHHHH
Q 008647 473 LILAFSREGS---QKEYVQHKMMDKA-AQLWSL-L-SKEGYLYVCGDAKGMARDVHRTL-HTIVQ 530 (558)
Q Consensus 473 ~~~a~Sr~~~---~k~yvq~~l~~~~-~~l~~~-~-~~~~~iyvCGp~~~M~~~v~~~L-~~i~~ 530 (558)
++.++|+++. .++++++.+.+.. +....+ . ..+..||+||| ++|+++|++.| .+.+.
T Consensus 168 ~~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vy~CGp-~~m~~~v~~~l~~~~G~ 231 (248)
T 1fdr_A 168 IQTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGN-PQMVRDTQQLLKETRQM 231 (248)
T ss_dssp EEEEESSSCCTTEEESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEEC-HHHHHHHHHHHHHHHCC
T ss_pred EEEEEecCCCCCCcceeeChHHHhhhHHHhhccCCCccCCEEEEeCC-HHHHHHHHHHHHHHcCC
Confidence 8999998864 2578888776532 222111 1 24679999999 89999999988 66543
No 21
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.94 E-value=1.9e-26 Score=238.54 Aligned_cols=182 Identities=25% Similarity=0.297 Sum_probs=151.9
Q ss_pred CCChhHHHHhhCCC-CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEEEEee
Q 008647 319 TPPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIR 396 (558)
Q Consensus 319 ~~~~~~~l~~~~p~-~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~-~l~~G~~~~~~~~v~v~~p 396 (558)
.+.+|||+.+.+|. ..+|+|||+|.|. .+.++|+|+++ ..|.+|+||+ ++++| +.|.+.+|
T Consensus 138 ~~~pGQ~v~l~~~~~~~~R~ySi~s~~~--~~~l~~~vk~~---------~~G~~S~~L~~~l~~G------d~v~v~gP 200 (338)
T 1krh_A 138 HFLAGQYVNVTLPGTTETRSYSFSSQPG--NRLTGFVVRNV---------PQGKMSEYLSVQAKAG------DKMSFTGP 200 (338)
T ss_dssp CCCTTCEEEEECTTSSCEEEEECCSCTT--CSEEEEEEECC---------TTCHHHHHHHTTCCTT------CEEEEEEE
T ss_pred CcCCCCeEEEEcCCCCccccccccCCCC--CCeEEEEEEEc---------CCCCchhhHhhccCCC------CEEEEECC
Confidence 45789999998676 5789999999986 58899999853 2599999996 69999 89999999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.|.++.+ .+++||||+|||||||++|++++.. .+ ...+++|+||+|+.+ |++|.++|+++++...+++++++
T Consensus 201 ~G~f~~~~~-~~~~vliagGtGiaP~~s~l~~l~~---~~-~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~ 274 (338)
T 1krh_A 201 FGSFYLRDV-KRPVLMLAGGTGIAPFLSMLQVLEQ---KG-SEHPVRLVFGVTQDC-DLVALEQLDALQQKLPWFEYRTV 274 (338)
T ss_dssp ECSCSCCCC-SSCEEEEEEGGGHHHHHHHHHHHHH---HC-CSSCEEEEEEESSGG-GCCCHHHHHHHHHHCTTEEEEEE
T ss_pred ccceEeCCC-CceEEEEEccccHhHHHHHHHHHHH---cC-CCCeEEEEEEeCCHH-HhhhHHHHHHHHHhCCCeEEEEE
Confidence 999998765 4899999999999999999999876 22 457899999999998 99999999999987777889999
Q ss_pred EecCCC---CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 477 FSREGS---QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 477 ~Sr~~~---~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+|+++. .++++++.+.+.. + -..+..||+||| ++|++++++.|.+..
T Consensus 275 ~s~~~~~~~~~g~v~~~l~~~~--~---~~~~~~vy~CGp-~~m~~~v~~~l~~~G 324 (338)
T 1krh_A 275 VAHAESQHERKGYVTGHIEYDW--L---NGGEVDVYLCGP-VPMVEAVRSWLDTQG 324 (338)
T ss_dssp ETTCCSSSSEESCSGGGCCGGG--G---GGGCSEEEEEEE-HHHHHHHHHHHHHHT
T ss_pred EecCCCCCCccCccCHHHHHhh--c---ccCCcEEEEECC-HHHHHHHHHHHHHcC
Confidence 998764 2578888775311 1 124679999999 899999999887653
No 22
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=99.93 E-value=4.5e-27 Score=236.09 Aligned_cols=196 Identities=17% Similarity=0.201 Sum_probs=148.4
Q ss_pred CCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEe
Q 008647 319 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 319 ~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~ 395 (558)
.+.+|||+.+.+|. ..+|+|||+|+|.. .+.++|+|+++.+.+..+....|.+|+||+++++| +.|.|.+
T Consensus 46 ~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~-~~~~~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~g 118 (275)
T 1umk_A 46 GLPVGQHIYLSARIDGNLVVRPYTPISSDDD-KGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIG------DTIEFRG 118 (275)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEECCSSCTTC-CSEEEEEEECCCSSSBTTBTTCCHHHHHHHHCCTT------CEEEEEE
T ss_pred CCCCCcEEEEEEeeCCcEEEeccccCCccCC-CCeEEEEEEEeccCcccccCCCChhHHHHhcCCCC------CEEEEEc
Confidence 34689999886432 36899999999864 68999999976433322222469999999999999 8999999
Q ss_pred eCCCCcC--------CCC--------CCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHH
Q 008647 396 RPSNFKL--------PAN--------PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYED 459 (558)
Q Consensus 396 p~g~F~l--------p~~--------~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~ 459 (558)
|.|.|.+ +.+ ..+++||||+|||||||++|++++.. ......+++|+||+|+.+ |++|.+
T Consensus 119 P~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vliagGtGIaP~~~~l~~l~~---~~~~~~~v~l~~~~r~~~-d~~~~~ 194 (275)
T 1umk_A 119 PSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMK---DPDDHTVCHLLFANQTEK-DILLRP 194 (275)
T ss_dssp EECSEEEEETTEEEECSSTTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHT---CTTCCCEEEEEEEESSGG-GCTTHH
T ss_pred CccceEecCCccccccccccccccccCCceEEEEecCccHhHHHHHHHHHHh---CCCCCcEEEEEEEcCCHH-HhhHHH
Confidence 9998754 321 35799999999999999999999864 211357899999999988 999999
Q ss_pred HHHHHHHcCC-ccEEEEEEecCCCC----ccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHH-HHHHHHHHHH
Q 008647 460 ELNNFEEEGV-ISELILAFSREGSQ----KEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMAR-DVHRTLHTIV 529 (558)
Q Consensus 460 el~~~~~~~~-~~~~~~a~Sr~~~~----k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~-~v~~~L~~i~ 529 (558)
||+++++... .+++++++|+++.. +++|++.+.+. .......++.||+||| ++|++ ++++.|.+++
T Consensus 195 el~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~v~~~~l~~---~l~~~~~~~~vyvCGp-~~m~~~~v~~~L~~~G 266 (275)
T 1umk_A 195 ELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRD---HLPPPEEEPLVLMCGP-PPMIQYACLPNLDHVG 266 (275)
T ss_dssp HHHHHHHHCTTTEEEEEEESSCCSSCSSEESSCCHHHHHH---HSCCGGGCCEEEEESC-HHHHHHTTHHHHHHHT
T ss_pred HHHHHHHhCcCcEEEEEEEcCCCccccCccCccCHHHHHH---hcCCCCCCeEEEEECC-HHHHHHHHHHHHHHcC
Confidence 9999988754 56788899986542 46676543211 1000124689999999 89999 8999887654
No 23
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=99.93 E-value=1.8e-26 Score=227.22 Aligned_cols=184 Identities=15% Similarity=0.292 Sum_probs=146.7
Q ss_pred CCChhHHHHhhCCCC-----CCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEE
Q 008647 319 TPPIGVFFAAVAPHL-----QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAP 392 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~-----~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~-~l~~G~~~~~~~~v~ 392 (558)
...+|||+.+.+|.. .+|+|||+|+|. .+.++|+|+.+. .++...|.+|+||+ ++++| +.|.
T Consensus 33 ~~~pGq~v~l~~~~~~~~~~~~R~ySi~s~~~--~~~~~i~vk~~~----~~~~~~G~~S~~l~~~l~~G------~~v~ 100 (243)
T 4eh1_A 33 DYQPGQYIGIEVTPEGSDYREIRQYSLSHASN--GREYRISVKREG----VGSDNPGLVSHYLHNNVKVG------DSVK 100 (243)
T ss_dssp CCCTTCEEEEEECCSSCSSCEEEEEEBCSCCC--SSCEEEEEECTT----TTSSSCCHHHHHHHHHCCTT------CEEE
T ss_pred CcCCCCEEEEEEecCCCccccceeeEeccCCC--CCeEEEEEEEee----cCCCCCCeehhHHHhcCCCC------CEEE
Confidence 457899999876632 369999999985 478999888431 11224699999997 59999 8999
Q ss_pred EEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccE
Q 008647 393 IFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISE 472 (558)
Q Consensus 393 v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~ 472 (558)
+.+|.|.|.++ +..+++||||+|||||||++|++++.. ++ ... ++|+||+|+.+ |++|.+||+++++.+ .++
T Consensus 101 v~gP~G~~~~~-~~~~~~vliagGtGitp~~~~l~~l~~---~~-~~~-v~l~~~~r~~~-~~~~~~el~~l~~~~-~~~ 172 (243)
T 4eh1_A 101 LYAPAGDFFYV-ERERPVVLISAGVGATPMQAILHTLAK---QN-KSG-VTYLYACNSAK-EHTFAQETAQLIAQQ-GWM 172 (243)
T ss_dssp EEEEECSCCCC-CCSSCEEEEEEGGGHHHHHHHHHHHHH---TT-CCS-EEEEEEESSGG-GCTTHHHHHHHHHHH-TCE
T ss_pred EEccCcccCcC-CCCCCEEEEEccccHHHHHHHHHHHHH---cC-CCe-EEEEEEeCChh-hhhHHHHHHHHHHhC-CeE
Confidence 99999999988 557899999999999999999999876 22 223 99999999999 999999999998877 678
Q ss_pred EEEEEecCCCC---ccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHHH
Q 008647 473 LILAFSREGSQ---KEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQ 530 (558)
Q Consensus 473 ~~~a~Sr~~~~---k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 530 (558)
+++++|++... +++++..+. . +-..+..||+||| +.|++++++.|.+...
T Consensus 173 ~~~~~s~~~~~~~~~g~~~~~~~-~------~~~~~~~vyvCGp-~~m~~~v~~~l~~~g~ 225 (243)
T 4eh1_A 173 QQVWYRDESADDVLQGEMQLAEL-I------LPIEDGDFYLCGP-IGFMQYVVKQLLALGV 225 (243)
T ss_dssp EEEEESSCCCTTCEESSCCCTTS-C------CCTTTCEEEEEEC-HHHHHHHHHHHHHHTC
T ss_pred EEEEEccCCCcccccCCccHHHe-e------ccCCCcEEEEECC-HHHHHHHHHHHHHcCC
Confidence 99999986542 455554332 1 1125789999999 8999999999987653
No 24
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=99.93 E-value=4.1e-26 Score=241.16 Aligned_cols=182 Identities=14% Similarity=0.233 Sum_probs=147.2
Q ss_pred CCChhHHHHhhCCC-----CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEE
Q 008647 319 TPPIGVFFAAVAPH-----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAP 392 (558)
Q Consensus 319 ~~~~~~~l~~~~p~-----~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~ 392 (558)
.+.+|||+.+.+|+ ...|+|||+|.|. ++.++|+|+.+ ..|.+|+||++ +++| +.|.
T Consensus 182 ~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~~---------~~G~~S~~L~~~l~~G------d~v~ 244 (396)
T 1gvh_A 182 EYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD--GKGYRIAVKRE---------EGGQVSNWLHNHANVG------DVVK 244 (396)
T ss_dssp CCCTTCEEEEEECCTTCSSCEEEEEECCSCCC--SSCEEEEEECC---------TTCHHHHHHHHTCCTT------CEEE
T ss_pred CCCCCCeEEEEecCCCCccceeecceeccCCC--CCeEEEEEEEc---------CCCcchHHHHhcCCCC------CEEE
Confidence 45789999987653 3479999999986 57899999843 14999999998 9999 8999
Q ss_pred EEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccE
Q 008647 393 IFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISE 472 (558)
Q Consensus 393 v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~ 472 (558)
+.+|.|.|.++.+..+|+||||+|||||||+||++++... + ...+++|+||+|+.+ |++|.+||+++++.+++++
T Consensus 245 v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~---~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~ 319 (396)
T 1gvh_A 245 LVAPAGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKA---G-HTAQVNWFHAAENGD-VHAFADEVKELGQSLPRFT 319 (396)
T ss_dssp EEEEECSCCCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHH---T-CCSCEEEEEEESCTT-TCCSHHHHHHHHHTSSSEE
T ss_pred EEcCCcceECCCCCCCCEEEEecchhHhHHHHHHHHHHhc---C-CCCcEEEEEEeCCHH-HhhhHHHHHHHHHHCCCeE
Confidence 9999999998755678999999999999999999998762 2 457899999999999 9999999999998888888
Q ss_pred EEEEEecCCCC---------ccchhhh-hHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 473 LILAFSREGSQ---------KEYVQHK-MMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 473 ~~~a~Sr~~~~---------k~yvq~~-l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+++++|+++.. .+++... +.+.. .+ +++.||+||| ++|+++|++.|.+.+
T Consensus 320 ~~~~~s~~~~~~~~~~~~~~~G~~~~~~l~~~~-----~~-~~~~vyvCGp-~~m~~~v~~~L~~~G 379 (396)
T 1gvh_A 320 AHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAF-----SD-PTMQFYLCGP-VGFMQFTAKQLVDLG 379 (396)
T ss_dssp EEEEESSCCHHHHHHTCCSEESSCCGGGSSSCC-----CC-TTCEEEEESC-HHHHHHHHHHHHHTT
T ss_pred EEEEECCCCccccccCccCccCcCCHHHHhhcc-----CC-CCCEEEEeCC-HHHHHHHHHHHHHcC
Confidence 99999987531 2344322 21100 11 3689999999 899999999887644
No 25
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=99.93 E-value=2.4e-27 Score=237.64 Aligned_cols=204 Identities=17% Similarity=0.190 Sum_probs=155.6
Q ss_pred CCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEE-
Q 008647 319 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF- 394 (558)
Q Consensus 319 ~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~- 394 (558)
.+.+|||+.+.+|. ...|+|||+|+|. .+.++|+|+.+ ..|.+|+||+++++| +.|.+.
T Consensus 46 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~~~~~v~~~---------~~G~~s~~l~~l~~G------d~v~v~~ 108 (271)
T 4fk8_A 46 RFNNGEFTMVGLEVDGKPLTRAYSIVSPNY--EEHLEFFSIKV---------QNGPLTSRLQHLKVG------DPVLIGK 108 (271)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEEECCSCTT--SSSEEEEEECC---------TTCTTHHHHTTCCTT------CEEEEES
T ss_pred CcCCCCEEEEEccCCCceeeeeEeccCCCC--CCcEEEEEEEE---------CCCchhhHHhcCCCC------CEEEEec
Confidence 45789999987662 3579999999985 46788888743 259999999999999 899999
Q ss_pred eeCCCCcCCC-CCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC----
Q 008647 395 IRPSNFKLPA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV---- 469 (558)
Q Consensus 395 ~p~g~F~lp~-~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~---- 469 (558)
+|.|.|.++. ...+++||||+|||||||++|++++.... ...+++|+||+|+.+ |++|.+||+++++.+.
T Consensus 109 gP~G~~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~ 183 (271)
T 4fk8_A 109 KPTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYE----RFDKVVLTHTCRLKG-ELAYMDYIKHDLPGHEYLGD 183 (271)
T ss_dssp CCBCSCCGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHHH----HCSEEEEEECCCSHH-HHHHHHHHHTCCTTCTTHHH
T ss_pred CCCcceecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhcC----CCCCEEEEEecCCHH-HHhHHHHHHHHHHhCccccc
Confidence 9999998875 35689999999999999999999876531 346899999999998 9999999999877654
Q ss_pred ----ccEEEEEEecCCC-CccchhhhhHhcHHHHHHh-----hhCCCEEEEeCCCcchHHHHHHHHHHHHHHccCCCHHH
Q 008647 470 ----ISELILAFSREGS-QKEYVQHKMMDKAAQLWSL-----LSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSK 539 (558)
Q Consensus 470 ----~~~~~~a~Sr~~~-~k~yvq~~l~~~~~~l~~~-----~~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~ 539 (558)
.++++.++|+++. .++++++.+.+.. .+..+ ...++.||+||| ++|++++++.|.+.......+
T Consensus 184 ~~~~~~~~~~~~s~~~~~~~G~v~~~~~~~~-l~~~~~~~~~~~~~~~v~vCGp-~~m~~~v~~~l~~~gv~~~~i---- 257 (271)
T 4fk8_A 184 VIREKLVYYPTVTREEFENEGRITDLIASGK-LFTDLDMPPFSPEQDRVMLCGS-TAMLKDTTELLKKAGLVEGKN---- 257 (271)
T ss_dssp HHHHHEEEEECC-------CCHHHHHHHHSH-HHHHTTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHHTTCCBCBT----
T ss_pred cccceEEEEEEecCCccccccccChHHhcch-hhhhcccccCCCCCCEEEEECC-HHHHHHHHHHHHHcCCchhhc----
Confidence 4578888888764 4678887765421 11111 124679999999 899999999998766544333
Q ss_pred HHHHHHHHHHCCCeEEeeC
Q 008647 540 AESIVKKFQMEGRYLRDVW 558 (558)
Q Consensus 540 a~~~~~~l~~~~Ry~~dvw 558 (558)
...|+|+.|.|
T Consensus 258 --------~~~~~~~~E~y 268 (271)
T 4fk8_A 258 --------SAPGHYVIERA 268 (271)
T ss_dssp --------TBCBSEEEEES
T ss_pred --------CCCCcEEEEEe
Confidence 33678888876
No 26
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=99.93 E-value=1.5e-25 Score=237.16 Aligned_cols=185 Identities=14% Similarity=0.255 Sum_probs=149.0
Q ss_pred CCChhHHHHhhC--C--C---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccE
Q 008647 319 TPPIGVFFAAVA--P--H---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSW 390 (558)
Q Consensus 319 ~~~~~~~l~~~~--p--~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~-~l~~G~~~~~~~~ 390 (558)
.+.+|||+.+.+ | . ..+|+|||+|+|. ++.++|+|+.... .+....|.+|+||+ ++++| +.
T Consensus 183 ~~~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~--~~~~~i~Vk~~~~---~~~~~~G~~S~~L~~~l~~G------d~ 251 (399)
T 4g1v_A 183 PITPGQYITVNTHPIRQENQYDALRHYSLCSAST--KNGLRFAVKMEAA---RENFPAGLVSEYLHKDAKVG------DE 251 (399)
T ss_dssp CCCTTCEEEEEECCCSTTCCSCEEEEEEBSCSCC--TTCEEEEEECCCC---BTTBCCCHHHHHHHHTCCTT------CE
T ss_pred CCCCCCEEEEEEeCCCCCCccceeeeecccCCCC--CCeEEEEEEeccC---CCCCCCCEehhHHHhCCCCC------CE
Confidence 356899999874 4 3 3579999999986 4789999984321 01123699999997 69999 89
Q ss_pred EEEEeeCCCCcCCCC----CCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHH
Q 008647 391 APIFIRPSNFKLPAN----PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEE 466 (558)
Q Consensus 391 v~v~~p~g~F~lp~~----~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~ 466 (558)
|.+.+|.|.|.++.+ ..+|+||||+|||||||+||++++... + ..++++|+||+|+.+ |++|.++|+++++
T Consensus 252 v~v~gP~G~f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~---~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~ 326 (399)
T 4g1v_A 252 IKLSAPAGDFAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKC---N-PNRPIYWIQSSYDEK-TQAFKKHVDELLA 326 (399)
T ss_dssp EEEEEEECSCCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHH---C-TTSCEEEEEEESSST-TSTTHHHHHHHHT
T ss_pred EEEEecccceeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHc---C-CCCCEEEEEecCCHH-HhhhHHHHHHHHH
Confidence 999999999999865 578999999999999999999998762 2 457899999999998 9999999999998
Q ss_pred cCCccEEEEEEecCCCCccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 467 EGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 467 ~~~~~~~~~a~Sr~~~~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
...++++++++|+++ +++.. +.+.+.+..++.||+||| ++|++++++.|.+.+
T Consensus 327 ~~~~~~~~~~~s~~~---g~~~~------~~l~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~G 379 (399)
T 4g1v_A 327 ECANVDKIIVHTDTE---PLINA------AFLKEKSPAHADVYTCGS-LAFMQAMIGHLKELE 379 (399)
T ss_dssp TCSSEEEEEEETTTS---CCCCH------HHHHHHSCSSCEEEEEEC-HHHHHHHHHHHHHTT
T ss_pred hCCCcEEEEEEeCCC---CcccH------HHHHhhCCCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 888888999999864 44432 223333445789999999 899999999987654
No 27
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=99.92 E-value=5.9e-26 Score=227.73 Aligned_cols=188 Identities=17% Similarity=0.217 Sum_probs=148.7
Q ss_pred CCChhHHHHhhCCC----CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEE
Q 008647 319 TPPIGVFFAAVAPH----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF 394 (558)
Q Consensus 319 ~~~~~~~l~~~~p~----~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~ 394 (558)
.+.+|||+.+.+|. ..+|+|||+|+|. .+.++|+|+.+ ..|.+|+||+++++| +.|.+.
T Consensus 43 ~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~--~~~~~l~v~~~---------~~G~~s~~l~~l~~G------d~v~v~ 105 (272)
T 2bgi_A 43 RFRSGEFVMIGLLDDNGKPIMRAYSIASPAW--DEELEFYSIKV---------PDGPLTSRLQHIKVG------EQIILR 105 (272)
T ss_dssp CCCTTCEEEEEEECTTSCEEEEEEECCSCTT--CSEEEEEEECC---------TTCTTHHHHTTCCTT------CEEEEE
T ss_pred ccCCCCEEEEEeccCCCCeeeeeeeeccCCC--CCeEEEEEEEc---------cCCCchhHHHhCCCC------CEEEEe
Confidence 45789999987662 3579999999986 37899988743 259999999999999 899999
Q ss_pred -eeCCCCcCCCCC-CCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHH-HHHH-----
Q 008647 395 -IRPSNFKLPANP-SVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELN-NFEE----- 466 (558)
Q Consensus 395 -~p~g~F~lp~~~-~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~-~~~~----- 466 (558)
+|.|.|.++... .+++||||+|||||||++|++++.. .+ ...+++|+||+|+.+ |++|.+||+ ++++
T Consensus 106 ~gP~G~f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~---~~-~~~~v~l~~~~r~~~-~~~~~~el~~~l~~~~~~~ 180 (272)
T 2bgi_A 106 PKPVGTLVIDALLPGKRLWFLATGTGIAPFASLMREPEA---YE-KFDEVIMMHACRTVA-ELEYGRQLVEALQEDPLIG 180 (272)
T ss_dssp EEEECSCCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGG---GT-SCSEEEEEEEESSSG-GGHHHHHHHHHHHHCTTTT
T ss_pred eCCCCcccccccccCCeEEEEeecccHHHHHHHHHHHHh---cC-CCCcEEEEEEeCCHH-HhhHHHHHHHHHHhcchhh
Confidence 899999887543 5799999999999999999998654 21 357899999999998 999999999 9987
Q ss_pred c--CCccEEEEEEecCCC-CccchhhhhHhcH-HHHHHh--h-hCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 467 E--GVISELILAFSREGS-QKEYVQHKMMDKA-AQLWSL--L-SKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 467 ~--~~~~~~~~a~Sr~~~-~k~yvq~~l~~~~-~~l~~~--~-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
. ...++++.++|+++. .++++++.+.+.. .....+ + ..++.||+||| ++|++++++.|.+.+
T Consensus 181 ~~~~~~~~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~G 249 (272)
T 2bgi_A 181 ELVEGKLKYYPTTTREEFHHMGRITDNLASGKVFEDLGIAPMNPETDRAMVCGS-LAFNVDVMKVLESYG 249 (272)
T ss_dssp TTSTTTEEEEEEESSSCCSSBCCHHHHHHSCHHHHHHTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHTTT
T ss_pred cccCCcEEEEEEecCCccccCceechHHHhhhHhhhcccccCCCCCcEEEEECC-HHHHHHHHHHHHHcC
Confidence 3 356688899998743 4678888776432 111111 1 24679999999 899999999887644
No 28
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=99.92 E-value=5.9e-26 Score=226.51 Aligned_cols=173 Identities=20% Similarity=0.230 Sum_probs=139.0
Q ss_pred CCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEe
Q 008647 319 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 319 ~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~ 395 (558)
.+.+|||+.+.+|. ..+|+|||+|+|.. .+.++|+|++++ .|.+|+||+++++| +.|.+.+
T Consensus 33 ~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~~~---------~G~~S~~l~~l~~G------d~v~v~g 96 (262)
T 1ep3_B 33 MDLPGQFLHLAVPNGAMLLRRPISISSWDKR-AKTCTILYRIGD---------ETTGTYKLSKLESG------AKVDVMG 96 (262)
T ss_dssp CCSTTCEEEECCSCTTCCSCEEEECCEEETT-TTEEEEEEECCC---------TTSHHHHHHTCCTT------CEEEEEE
T ss_pred cCCCCceEEEEcCCCCceeeEEEEeeeecCC-CCEEEEEEEEec---------CCchHHHHhcCCCC------CEEEEEc
Confidence 35789999987664 68999999999864 578999998432 48999999999999 8999999
Q ss_pred eCCC-CcCCCC-CCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEE
Q 008647 396 RPSN-FKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISEL 473 (558)
Q Consensus 396 p~g~-F~lp~~-~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~ 473 (558)
|.|. |.++.+ ..+++||||+|||||||++|++++... ..+++|+||+|+++ |++|.+||++++.. ++
T Consensus 97 P~G~~f~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~------~~~v~l~~~~r~~~-~~~~~~el~~l~~~----~~ 165 (262)
T 1ep3_B 97 PLGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKT------GCQMTILLGFASEN-VKILENEFSNLKNV----TL 165 (262)
T ss_dssp EESBCCCCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHH------TCEEEEEEEESSGG-GCCCHHHHHTSTTE----EE
T ss_pred ccCCCccCCCccCCCeEEEEECcCcHHHHHHHHHHHHHc------CCeEEEEEEcCCHH-HhhhHHHHhhhccC----cE
Confidence 9996 998764 367999999999999999999998761 26899999999999 99999999986542 34
Q ss_pred EEEEecCCC--CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHH
Q 008647 474 ILAFSREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 528 (558)
Q Consensus 474 ~~a~Sr~~~--~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i 528 (558)
+++ ++++. .++++++.+.+. +.+++.||+||| ++|++++++ |.+.
T Consensus 166 ~~~-~~~~~~~~~g~v~~~l~~~-------~~~~~~vyvCGp-~~m~~~v~~-l~~~ 212 (262)
T 1ep3_B 166 KIA-TDDGSYGTKGHVGMLMNEI-------DFEVDALYTCGA-PAMLKAVAK-KYDQ 212 (262)
T ss_dssp EEE-ETTCSSSEESCHHHHHHHC-------CSCCSEEEEESC-HHHHHHHHH-HTTT
T ss_pred EEE-ECCCCCcceeehHHHHHhh-------ccCCCEEEEECC-HHHHHHHHH-HHhC
Confidence 443 44432 357888755432 345689999999 899999998 7643
No 29
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=99.92 E-value=3.8e-25 Score=234.26 Aligned_cols=190 Identities=18% Similarity=0.255 Sum_probs=147.1
Q ss_pred CCChhHHHHhhCC--C---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEE
Q 008647 319 TPPIGVFFAAVAP--H---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAP 392 (558)
Q Consensus 319 ~~~~~~~l~~~~p--~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~-l~~G~~~~~~~~v~ 392 (558)
.+.+|||+.+.+| . ..+|+|||+|.|. .+.++|+|+.+. .++.+.|.+|+||++ +++| +.|.
T Consensus 184 ~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~~~----~~~~~~G~~S~~L~~~l~~G------d~v~ 251 (403)
T 1cqx_A 184 NFEPGQYTSVAIDVPALGLQQIRQYSLSDMPN--GRTYRISVKREG----GGPQPPGYVSNLLHDHVNVG------DQVK 251 (403)
T ss_dssp CCCTTCEEEEEEEETTTTEEEEEEEECCSCCC--SSCEEEEEECCC----BTTBCCCHHHHHHHHHCCTT------CEEE
T ss_pred CCCCCCEEEEEEecCCCCcceeecceecCCCC--CCeEEEEEEECC----CCCCCCCeehHHHhhCCCCC------CEEE
Confidence 4578999998755 2 2479999999986 578999998542 112235999999995 9999 8999
Q ss_pred EEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccE
Q 008647 393 IFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISE 472 (558)
Q Consensus 393 v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~ 472 (558)
+.+|.|.|.++.+..+|+||||+|||||||+||++++.. ....+++|+||+|+.+ |++|.+||+++++.+.+++
T Consensus 252 v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~-----~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~ 325 (403)
T 1cqx_A 252 LAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ-----APPRQVVFVHGARNSA-VHAMRDRLREAAKTYENLD 325 (403)
T ss_dssp ECCCBCSCSCCTTCCSCEEEEESSCCHHHHHHHHHHHTC-----SSCCCEEEEEEESCSS-SCHHHHHHHHHHHHCTTEE
T ss_pred EecCccCcccCCCCCCCEEEEEecccHhhHHHHHHHHHh-----CCCCcEEEEEEeCChh-hCcHHHHHHHHHHhCCCcE
Confidence 999999999875567899999999999999999998763 1457899999999999 9999999999998877788
Q ss_pred EEEEEecCCCCc----cchh-hhhHhcHHHHHHh-hhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 473 LILAFSREGSQK----EYVQ-HKMMDKAAQLWSL-LSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 473 ~~~a~Sr~~~~k----~yvq-~~l~~~~~~l~~~-~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
+++++|+++... .|.+ .++... .+.+. ..+++.||+||| ++|+++|++.|.+.+
T Consensus 326 ~~~~~s~~~~~~~~~~~~~~~G~i~~~--~l~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~G 385 (403)
T 1cqx_A 326 LFVFYDQPLPEDVQGRDYDYPGLVDVK--QIEKSILLPDADYYICGP-IPFMRMQHDALKNLG 385 (403)
T ss_dssp EEEEESSCCTTCCBTTTBSEESSCCGG--GSHHHHCCTTCEEEEESS-HHHHHHHHHHHHHTT
T ss_pred EEEEECCCCcccccccccCcCCCcCHH--HHhhccCCCCCEEEEeCC-HHHHHHHHHHHHHcC
Confidence 999999875421 1221 122111 11111 113789999999 899999999887654
No 30
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=99.92 E-value=5.7e-26 Score=227.35 Aligned_cols=191 Identities=15% Similarity=0.229 Sum_probs=143.1
Q ss_pred CCChhHHHHhhCC---CCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCC-cccCcccHHhhhcCCCCCCCCccEEEEE
Q 008647 319 TPPIGVFFAAVAP---HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGR-IHKGVCSTWMKNAIPLEGNGDCSWAPIF 394 (558)
Q Consensus 319 ~~~~~~~l~~~~p---~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~-~~~G~~S~~L~~l~~G~~~~~~~~v~v~ 394 (558)
.+.+|||+.+.++ ...+|+|||+|+|.. ++.++|+|+++.. ...++ ...|.+|+||+++++| +.|.+.
T Consensus 42 ~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~-~~~~~l~vk~~~~-~~~~~~~~~G~~s~~l~~l~~G------d~v~v~ 113 (270)
T 2cnd_A 42 GLPIGKHIFVCATIEGKLCMRAYTPTSMVDE-IGHFDLLVKVYFK-NEHPKFPNGGLMTQYLDSLPVG------SYIDVK 113 (270)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEECCCSCTTC-CSEEEEEEECCCS-SCBTTBTTCCHHHHHHHHCCTT------CEEEEE
T ss_pred CCCCCCEEEEEeeeCCcEEEEeeccCCCccC-CCEEEEEEEEecc-CcccccCCCCchhhHHhcCCCC------CEEEEE
Confidence 4578999988643 236799999999864 5889999986521 11111 1259999999999999 899999
Q ss_pred eeCCC--------CcCCC--CCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHH
Q 008647 395 IRPSN--------FKLPA--NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNF 464 (558)
Q Consensus 395 ~p~g~--------F~lp~--~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~ 464 (558)
+|.|. |.++. ...+++||||+|||||||++|++++.... .....+++|+||+|+.+ |++|.+||+++
T Consensus 114 gP~G~~~~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~--~~~~~~v~l~~~~r~~~-d~~~~~el~~l 190 (270)
T 2cnd_A 114 GPLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQ--PEDHTEMHLVYANRTED-DILLRDELDRW 190 (270)
T ss_dssp EEECSEECCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTT--TTCCCEEEEEEEESCGG-GCTTHHHHHHH
T ss_pred CCcccceeccccceeccCCcccCCEEEEEeccccHHHHHHHHHHHHhcC--CCCCcEEEEEEEcCCHH-HcchHHHHHHH
Confidence 99996 55553 24679999999999999999999987621 11357899999999999 99999999999
Q ss_pred HHcCC-ccEEEEEEecC---CC----CccchhhhhHhcHHHHHHhhh---CCCEEEEeCCCcchHHH-HHHHHHH
Q 008647 465 EEEGV-ISELILAFSRE---GS----QKEYVQHKMMDKAAQLWSLLS---KEGYLYVCGDAKGMARD-VHRTLHT 527 (558)
Q Consensus 465 ~~~~~-~~~~~~a~Sr~---~~----~k~yvq~~l~~~~~~l~~~~~---~~~~iyvCGp~~~M~~~-v~~~L~~ 527 (558)
++... .+++++++|++ +. .++++++.+.+ +.+. .++.||+||| ++|+++ +++.|.+
T Consensus 191 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~------~~l~~~~~~~~vyvCGp-~~m~~~~~~~~L~~ 258 (270)
T 2cnd_A 191 AAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLR------EHVPEGGDDTLALACGP-PPMIQFAISPNLEK 258 (270)
T ss_dssp HHHCTTTEEEEEEESCCSCGGGCCCSEESSCCHHHHH------HHSCCCSSSEEEEEECC-HHHHHTTTHHHHHT
T ss_pred HHHCcCcEEEEEEECCCCCCCCCcccccccCCHHHHH------HhcCCCcCCEEEEEECC-HHHHHHHHHHHHHH
Confidence 87754 46788888873 21 25677664322 1222 3468999999 899996 5777764
No 31
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=99.92 E-value=4.8e-26 Score=226.35 Aligned_cols=188 Identities=16% Similarity=0.178 Sum_probs=147.3
Q ss_pred CCChhHHHHhhCCC---CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEE-
Q 008647 319 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF- 394 (558)
Q Consensus 319 ~~~~~~~l~~~~p~---~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~- 394 (558)
.+.+|||+.+.+|. ...|+|||+|.|. .+.++|+|+.+ ..|.+|+||+++++| +.|.+.
T Consensus 30 ~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~--~~~~~~~i~~~---------~~G~~s~~l~~l~~G------d~v~v~~ 92 (257)
T 2qdx_A 30 RFKTGQFVMIGLEVDGRPLMRAYSIASPNY--EEHLEFFSIKV---------PDGPLTSRLQHLKEG------DELMVSR 92 (257)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEEECCSCTT--SSEEEEEEECC---------TTCTTHHHHTTCCTT------CEEEECS
T ss_pred ccCCCCEEEEEecCCCCceeeeeEeecCCC--CCeEEEEEEEe---------CCCcchhHHHhCCCC------CEEEEec
Confidence 45789999987552 3679999999986 37899988743 259999999999999 899999
Q ss_pred eeCCCCcCCCCC-CCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHH-HHHH-----c
Q 008647 395 IRPSNFKLPANP-SVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELN-NFEE-----E 467 (558)
Q Consensus 395 ~p~g~F~lp~~~-~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~-~~~~-----~ 467 (558)
+|.|.|.++... .+++||||+|||||||++|++++.... ...+++|+||+|+.+ |++|.+||+ ++++ .
T Consensus 93 gp~G~f~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~~l~~~~~~~~ 167 (257)
T 2qdx_A 93 KPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYE----RYEKVILVHGVRWVS-ELAYADFITKVLPEHEYFGD 167 (257)
T ss_dssp CCBCSCCGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHHH----HCSEEEEEEEESSGG-GCTTHHHHHTTGGGCTTTHH
T ss_pred CCCCCccCCcccCCCeEEEEEeceEHHHHHHHHHHHHhcC----CCCeEEEEEEcCCHH-HhHhHHHHHHHHHhchhhhc
Confidence 899999887542 579999999999999999999876521 246899999999998 999999999 8765 2
Q ss_pred --CCccEEEEEEecCCC-CccchhhhhHhcH-HHHHHh--h-hCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 468 --GVISELILAFSREGS-QKEYVQHKMMDKA-AQLWSL--L-SKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 468 --~~~~~~~~a~Sr~~~-~k~yvq~~l~~~~-~~l~~~--~-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
...++++.++|+++. .++++++.+.+.. .....+ + ..++.||+||| ++|++++++.|.+.+
T Consensus 168 ~~~~~~~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~G 235 (257)
T 2qdx_A 168 QVKEKLIYYPLVTREPFRNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGS-PSMLEETSAVLDSFG 235 (257)
T ss_dssp HHHHHEEEEEEESSSCCSSBSCHHHHHHHSHHHHHHTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHHTT
T ss_pred cCCCcEEEEEEecCCCcccCceechhhhhhhHHHhcccccCCcCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 245678889998753 3678888776432 111111 1 24679999999 899999999887644
No 32
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.91 E-value=4.9e-25 Score=226.34 Aligned_cols=174 Identities=16% Similarity=0.204 Sum_probs=139.0
Q ss_pred CCChhHHHHhhCCCCCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCc-ccHHhh-hcCCCCCCCCccEEEEEee
Q 008647 319 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGV-CSTWMK-NAIPLEGNGDCSWAPIFIR 396 (558)
Q Consensus 319 ~~~~~~~l~~~~p~~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~-~S~~L~-~l~~G~~~~~~~~v~v~~p 396 (558)
.+.+|||+.+.+|....|+|||+|+|.. .+.++|+|+.+ ..|. +|+||+ ++++| +.|.|.+|
T Consensus 38 ~~~pGQ~v~l~~~~g~~R~ySi~s~~~~-~~~l~i~Vk~~---------~~G~g~S~~L~~~l~~G------d~v~v~gP 101 (321)
T 2pia_A 38 PFEAGANLTVAVPNGSRRTYSLCNDSQE-RNRYVIAVKRD---------SNGRGGSISFIDDTSEG------DAVEVSLP 101 (321)
T ss_dssp CCCTTCEEEEECTTSCEEEEECCSCTTC-CSEEEEEEECC---------TTSCSHHHHHHHSCCTT------CEEEECCC
T ss_pred CCCCCCEEEEECCCCCcEEEEeCCCCCC-CCeEEEEEEEe---------cCCcchhHHHHhcCCCC------CEEEEeCC
Confidence 3578999999877678999999999864 57899999843 2487 899999 69999 89999999
Q ss_pred CCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEEE
Q 008647 397 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 476 (558)
Q Consensus 397 ~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a 476 (558)
.|.|.++.+ .+++||||+|||||||++|++++.. .+ ..+++|+||+|+.+ |++|.+||++++ .+.. +.+.
T Consensus 102 ~g~f~l~~~-~~~~vliagG~GItP~~s~l~~l~~---~~--~~~v~l~~~~r~~~-~~~~~~el~~l~-~~~~--~~~~ 171 (321)
T 2pia_A 102 RNEFPLDKR-AKSFILVAGGIGITPMLSMARQLRA---EG--LRSFRLYYLTRDPE-GTAFFDELTSDE-WRSD--VKIH 171 (321)
T ss_dssp BCCSCCCTT-CSEEEEEEEGGGHHHHHHHHHHHHH---HC--SSEEEEEEEESCGG-GCTTHHHHHSTT-TTTT--EEEE
T ss_pred ccccccCCC-CCCEEEEEecccHhHHHHHHHHHHH---cC--CCcEEEEEEECChh-hhHHHHHHhcCc-cCCe--EEEE
Confidence 999999864 6799999999999999999999876 22 27899999999999 999999999885 2333 4455
Q ss_pred EecCCC-CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHH
Q 008647 477 FSREGS-QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 527 (558)
Q Consensus 477 ~Sr~~~-~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~ 527 (558)
++++.. .+.++++++.. ...+..||+||| ++|+++|++.|.+
T Consensus 172 ~~~~~~~g~~~~~~ll~~--------~~~~~~vyvCGP-~~m~~~v~~~l~~ 214 (321)
T 2pia_A 172 HDHGDPTKAFDFWSVFEK--------SKPAQHVYCCGP-QALMDTVRDMTGH 214 (321)
T ss_dssp ECTTCTTSCCCHHHHHSS--------CCTTEEEEEESC-HHHHHHHHHHTTT
T ss_pred ECCCcccCccCHHHHhcc--------cCCCCEEEEECC-HHHHHHHHHHHHh
Confidence 565432 23344443322 124679999999 8999999998876
No 33
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=99.91 E-value=1.3e-24 Score=208.84 Aligned_cols=107 Identities=23% Similarity=0.461 Sum_probs=99.9
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.++.+||++||||+|++|+||+.|+++|..... .+++++|||||+||++|++||.+++.++++|+++||++|+|+++
T Consensus 86 ~~~~vI~~tsTyG~Ge~Pdna~~F~~~L~~~~~---~l~~~~~aVfGlGdssY~~F~~a~k~ld~~L~~lGa~~l~~~g~ 162 (219)
T 3hr4_A 86 EERLLLVVTSTFGNGDCPGNGEKLKKSLFMLKE---LNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGASQLTPMGE 162 (219)
T ss_dssp TCSEEEEEEECBTTTBCCGGGHHHHHHHHHCCC---CSSCCEEEEEEEECTTSSSTTHHHHHHHHHHHHHTCEESSCCEE
T ss_pred cCCeEEEEEeccCCCcCCHHHHHHHHHHHhcch---hhcCCEEEEEeCCCcchHHHhHHHHHHHHHHHHCCCCEeeCCEE
Confidence 467999999999999999999999999987542 28899999999999999999999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHhhcCCC
Q 008647 82 GDDDQCIEDDFTAWRELVWPELDQLLRDED 111 (558)
Q Consensus 82 ~d~~~~~~~~~~~W~~~l~~~l~~~~~~~~ 111 (558)
+|++.+.+++|+.|.+++|++|++.++.+.
T Consensus 163 ~D~~~~~e~~~~~W~~~l~~~l~~~~~~~~ 192 (219)
T 3hr4_A 163 GDELSGQEDAFRSWAVQTFKAACETFDVRG 192 (219)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred EecCCCcHHHHHHHHHHHHHHHHHHcCCCc
Confidence 999889999999999999999999987644
No 34
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=99.81 E-value=1.2e-20 Score=187.04 Aligned_cols=169 Identities=15% Similarity=0.109 Sum_probs=122.1
Q ss_pred CChhHHHHhhCCC----CCCcccccCCCCCCCCCeEEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEe
Q 008647 320 PPIGVFFAAVAPH----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 395 (558)
Q Consensus 320 ~~~~~~l~~~~p~----~~pR~YSIaS~p~~~~~~i~l~v~vv~~~~~~~~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~ 395 (558)
..+|||+.+.+|. ...|+|||+|.+. +.++|.|+++. ..|.+|+||+++++| +.|.|.+
T Consensus 39 ~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~---~~~~i~~~~~~--------~~G~~S~~l~~l~~G------d~l~v~g 101 (252)
T 2gpj_A 39 DQESAYIKLLFPQAGERPLMRTYTIRQQRD---DEIDVDFVLHD--------TDGPASSWAKTAQVG------ELIQIGG 101 (252)
T ss_dssp CCTTCEEEEEECCTTSCCEEEEEECCEEET---TEEEEEEECCS--------SCCHHHHHHHHCCTT------CEEEEEE
T ss_pred CCCCCeEEEEcccCCCCCCCCceeeeccCC---CEEEEEEEEeC--------CCCcHHHHHhhCCCC------CEEEEec
Confidence 4689999997664 4679999999763 57777776431 128999999999999 9999999
Q ss_pred eCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCccEEEE
Q 008647 396 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 475 (558)
Q Consensus 396 p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~ 475 (558)
|.|.|.++.+ .++++|||+|||||||++|++++. ...++++++++|+.+ |....+ ....++++.
T Consensus 102 P~G~f~l~~~-~~~~lliagGtGitPi~s~l~~l~-------~~~~~~~~~~~~~~~-d~~~l~-------~~~~~~v~~ 165 (252)
T 2gpj_A 102 PGLKKLINFE-ADWFLLAGDMTALPAISVNLAKLP-------NNAVGYAVIEVLSEA-DIQPLV-------HPEHVELHW 165 (252)
T ss_dssp EECCCCCCSS-SSEEEEEEEGGGHHHHHHHHHHSC-------TTCEEEEEEEESSGG-GCCCCC-------CCTEEEEEE
T ss_pred CCCCCcCCCC-CceEEEEcchhhHHHHHHHHHhCC-------CCCcEEEEEEECCHH-Hhhccc-------CCCCcEEEE
Confidence 9999998754 469999999999999999999863 235678999999877 665321 223456666
Q ss_pred EEecCCCC-ccchhhhhHhcHHHHHHh-h-hCCCEEEEeCCCcchHHHHHHHHH-HHH
Q 008647 476 AFSREGSQ-KEYVQHKMMDKAAQLWSL-L-SKEGYLYVCGDAKGMARDVHRTLH-TIV 529 (558)
Q Consensus 476 a~Sr~~~~-k~yvq~~l~~~~~~l~~~-~-~~~~~iyvCGp~~~M~~~v~~~L~-~i~ 529 (558)
+++.+... ...+.+.+. ++ . ..+..+|+||| ++|++++++.|. +..
T Consensus 166 ~~~~~~~~~g~~~~~~l~-------~~~~~~~~~~vy~CGP-~~m~~av~~~l~~~~G 215 (252)
T 2gpj_A 166 VINPEADPEGRPLVERIA-------QLPWLAGEPAVWIACE-FNSMRALRRHFKQAHA 215 (252)
T ss_dssp EECSSCCTTCHHHHHHHT-------TSCCCSSCEEEEEEEE-HHHHHHHHHHHHHHCC
T ss_pred EeCCCCCcccHHHHHHHH-------hccCCCCCcEEEEEcC-HHHHHHHHHHHHHhcC
Confidence 66544321 112222221 11 1 13568999999 899999999987 443
No 35
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=99.75 E-value=8.4e-19 Score=161.13 Aligned_cols=128 Identities=9% Similarity=-0.020 Sum_probs=83.9
Q ss_pred cCCCCCCCCccE-EEEEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCcccc
Q 008647 379 AIPLEGNGDCSW-APIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIY 457 (558)
Q Consensus 379 l~~G~~~~~~~~-v~v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y 457 (558)
+++| +. +.+.+|.|.|.... ..++++||||||||||++||+++... + ..+++|+ |+|+.+ |++|
T Consensus 1 L~~G------d~vl~v~gP~G~~f~~~-~~~~~llIaGG~GItPl~sm~~~l~~---~---~~~v~l~-g~r~~~-d~~~ 65 (158)
T 3lrx_A 1 MKEG------DSLLNVAGPLGTPVPME-KFGKILAIGAYTGIVEVYPIAKAWQE---I---GNDVTTL-HVTFEP-MVIL 65 (158)
T ss_dssp -----------------CCCCCCBCCC-CCSEEEEEEETTHHHHHHHHHHHHHH---H---TCEEEEE-EECBGG-GCCS
T ss_pred CcCC------CEeeEEECCCCCCCccC-CCCeEEEEEccCcHHHHHHHHHHHHh---c---CCcEEEE-EeCCHH-HhhH
Confidence 4677 89 59999999754433 46799999999999999999998865 2 2479999 999999 9999
Q ss_pred HHHHHHHHHcCCccEEEEEEecCCC--------CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 458 EDELNNFEEEGVISELILAFSREGS--------QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 458 ~~el~~~~~~~~~~~~~~a~Sr~~~--------~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
.+||++++.+ ..+..+++++.. .++++++.+.+... + .+...||+||| ++|++++.+.|.+..
T Consensus 66 ~~el~~l~~~---~~~~~v~~~~~~~~~~~~~g~~G~v~~~l~~~l~---~--~~~~~vy~CGP-~~mm~~v~~~l~~~G 136 (158)
T 3lrx_A 66 KEELEKAVTR---HIVEPVPLNPNQDFLANMKNVSQRLKEKVRELLE---S--EDWDLVFMVGP-VGDQKQVFEVVKEYG 136 (158)
T ss_dssp HHHHHHHSSE---EEECCBCCCTTSCHHHHHHHHHHHHHHHHHHHHH---H--SCCSEEEEESC-HHHHHHHHHHHGGGT
T ss_pred HHHHHHHHhc---eEEEEeeccccccCCCCCCCCcccccHHHHHhhc---c--CCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 9999998642 222222333211 13455554332111 1 14568999999 999999999887654
Q ss_pred H
Q 008647 530 Q 530 (558)
Q Consensus 530 ~ 530 (558)
.
T Consensus 137 v 137 (158)
T 3lrx_A 137 V 137 (158)
T ss_dssp C
T ss_pred C
Confidence 3
No 36
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=99.74 E-value=4.3e-18 Score=161.07 Aligned_cols=100 Identities=26% Similarity=0.651 Sum_probs=90.6
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCc-hHHHHHHHHHHHHHHhCCCeEeecCc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLG 80 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~l~~~l~~lGa~~i~~~~ 80 (558)
.++.+||++||| +|++|+|+..|+++|..... ..|++++|||||+||++| ++||.+++.++++|+++||+++.+++
T Consensus 67 ~~d~vi~g~~Ty-~G~~p~~~~~fl~~L~~~~~--~~l~~~~~avfG~Gds~y~~~f~~a~~~l~~~L~~~Ga~~v~~~~ 143 (191)
T 1bvy_F 67 REGAVLIVTASY-NGHPPDNAKQFVDWLDQASA--DEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRG 143 (191)
T ss_dssp SSSEEEEEECCB-TTBCCTTTHHHHHHHHTCCS--SCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEEEE
T ss_pred hCCeEEEEEeec-CCCcCHHHHHHHHHHHhccc--hhhCCCEEEEEEccCCchhhhHhHHHHHHHHHHHHCCCeEeeccE
Confidence 478999999999 99999999999999986532 238899999999999999 79999999999999999999999999
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHH
Q 008647 81 LGDDDQCIEDDFTAWRELVWPELD 104 (558)
Q Consensus 81 ~~d~~~~~~~~~~~W~~~l~~~l~ 104 (558)
++|+..+.+.+++.|.+.+|++|.
T Consensus 144 ~~d~~~d~e~~~~~w~~~l~~~l~ 167 (191)
T 1bvy_F 144 EADASDDFEGTYEEWREHMWSDVA 167 (191)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHH
T ss_pred EEecCCChHHHHHHHHHHHHHHhc
Confidence 999855677779999999999996
No 37
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=99.71 E-value=1e-17 Score=151.06 Aligned_cols=121 Identities=9% Similarity=0.009 Sum_probs=84.4
Q ss_pred EEEEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhcCCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCc
Q 008647 391 APIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVI 470 (558)
Q Consensus 391 v~v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~~~~~~~i~L~~G~R~~~~d~~y~~el~~~~~~~~~ 470 (558)
+.|.+|.|.|....+ .++++||||||||||++||+++... ...+++|+ |+|+++ |++|.+||++++++
T Consensus 3 ~~v~GP~G~~~~~~~-~~~~llIaGG~GiaPl~sm~~~l~~------~~~~v~l~-g~R~~~-~~~~~~el~~l~~~--- 70 (142)
T 3lyu_A 3 LNVAGPLGTPVPMEK-FGKILAIGAYTGIVEVYPIAKAWQE------IGNDVTTL-HVTFEP-MVILKEELEKAVTR--- 70 (142)
T ss_dssp ----CCCSCCBCCCC-CSEEEEEEETTHHHHHHHHHHHHHH------TTCEEEEE-EEEEGG-GCCSHHHHHTTSSE---
T ss_pred eeeeCCCCCCccCCC-CCeEEEEECcCcHHHHHHHHHHHHh------cCCcEEEE-EeCCHH-HhhHHHHHHHHHhh---
Confidence 568899997665533 6799999999999999999998775 23579999 999999 99999999987542
Q ss_pred cEEEEEEecCCC--------CccchhhhhHhcHHHHHHhhhCCCEEEEeCCCcchHHHHHHHHHHHH
Q 008647 471 SELILAFSREGS--------QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 529 (558)
Q Consensus 471 ~~~~~a~Sr~~~--------~k~yvq~~l~~~~~~l~~~~~~~~~iyvCGp~~~M~~~v~~~L~~i~ 529 (558)
..+..+++++.. .+++|.+.+.+.. .. .+...||+||| ++|+++|.+.+.+..
T Consensus 71 ~~~~~~~~~~~~~~~d~~~g~~G~v~~~l~~~~----~~-~~~~~vy~CGP-~~Mm~av~~~l~~~~ 131 (142)
T 3lyu_A 71 HIVEPVPLNPNQDFLANMKNVSQRLKEKVRELL----ES-EDWDLVFMVGP-VGDQKQVFEVVKEYG 131 (142)
T ss_dssp EEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHH----HS-SCCSEEEEESC-HHHHHHHHHHHHHHT
T ss_pred eEEEEeecccccCCCCCCCCCccchhHHHHHhc----cc-CCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 223334444321 1344544332211 10 13468999999 999999999888765
No 38
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=99.71 E-value=4.5e-18 Score=159.72 Aligned_cols=136 Identities=13% Similarity=0.205 Sum_probs=93.7
Q ss_pred EEEeeCCCCcCCCCCCCCEEEEccCccccchHHHHHHHHHHhhc---CCCCCCeEEEEeccCCCCccc-cHHHHHHHHHc
Q 008647 392 PIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQD---GAQLGPALLFFGCRNRRMDFI-YEDELNNFEEE 467 (558)
Q Consensus 392 ~v~~p~g~F~lp~~~~~plilIa~GtGIAP~~s~l~~~~~~~~~---~~~~~~i~L~~G~R~~~~d~~-y~~el~~~~~~ 467 (558)
.|.+|+|.|.++....+++||||||||||||+||++++...... +....+++|+||+|+.+ +++ |.++|+++++.
T Consensus 2 ~v~GP~G~~~~~~~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~-~~~w~~~~l~~l~~~ 80 (186)
T 3a1f_A 2 AVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTH-AFEWFADLLQLLESQ 80 (186)
T ss_dssp CTTSTTSHHHHHHTTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTT-TTHHHHHHHHHHHHH
T ss_pred eEECCCCCCccChhhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcc-hHHHHHHHHHHHHHH
Confidence 45789998876434467999999999999999999998764211 11357899999999999 888 99999999875
Q ss_pred ------CCccEEEEEEecCCCC---ccchh-----hhh----------HhcHHHHHH-h---hh-CCCEEEEeCCCcchH
Q 008647 468 ------GVISELILAFSREGSQ---KEYVQ-----HKM----------MDKAAQLWS-L---LS-KEGYLYVCGDAKGMA 518 (558)
Q Consensus 468 ------~~~~~~~~a~Sr~~~~---k~yvq-----~~l----------~~~~~~l~~-~---~~-~~~~iyvCGp~~~M~ 518 (558)
..++++++++|++... +.|++ +.+ +-+.+.+.+ + .. .+..||+||| ++|+
T Consensus 81 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gR~~~~~~~~~~~~~~~~~~~~v~~CGP-~~m~ 159 (186)
T 3a1f_A 81 MQERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGP-EALA 159 (186)
T ss_dssp HHHTTCTTSEEEEEEETTC-----------------------CCEEESCCCHHHHHHHHHHHSTTCEEEEEEESC-HHHH
T ss_pred HhhccCCCeEEEEEEEcCCCCCcccceeeccccccccCCCCccccccCCCCHHHHHHHHHHhCCCCcEEEEEeCC-HHHH
Confidence 3356788889886321 11111 000 001122222 1 11 3578999999 8999
Q ss_pred HHHHHHHHHHH
Q 008647 519 RDVHRTLHTIV 529 (558)
Q Consensus 519 ~~v~~~L~~i~ 529 (558)
++|++.|.+..
T Consensus 160 ~~v~~~l~~~g 170 (186)
T 3a1f_A 160 ETLSKQSISNS 170 (186)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhh
Confidence 99999988765
No 39
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=99.66 E-value=1.3e-17 Score=151.07 Aligned_cols=99 Identities=25% Similarity=0.348 Sum_probs=90.2
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.++.+||++||||.|++|+++..|+++|.....+ +++++|+|||+||++|++||.+++.++++|+++||+++.+.+.
T Consensus 46 ~~d~vi~g~pt~g~g~~p~~~~~f~~~l~~~~~~---l~~~~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~ 122 (147)
T 2hna_A 46 ASGIWLVISSTHGAGDIPDNLSPFYEALQEQKPD---LSAVRFGAIGIGSREYDTFCGAIDKLEAELKNSGAKQTGETLK 122 (147)
T ss_dssp SEEEEEEECCTTTTCCTTSSCHHHHHHHHHHCCC---TTEEEEEEESCCHHHHSCSSSCTTHHHHHHHHHTCEECSSCBC
T ss_pred cCCeEEEEECccCCCCCChhHHHHHHHHHhhccc---cCCCEEEEEecccCCHHHHHHHHHHHHHHHHHcCCeEeeeeEE
Confidence 4689999999999999999999999999864222 8899999999999999999999999999999999999999999
Q ss_pred cCCCC--CchhHHHHHHHHHHHHH
Q 008647 82 GDDDQ--CIEDDFTAWRELVWPEL 103 (558)
Q Consensus 82 ~d~~~--~~~~~~~~W~~~l~~~l 103 (558)
+|.+. +.++.+++|.+++++.|
T Consensus 123 ~d~~~~~~~~~~~~~w~~~~~~~l 146 (147)
T 2hna_A 123 INILDHDIPEDPAEEWLGSWVNLL 146 (147)
T ss_dssp CCCSSCCSSCSCCHHHHHHHHHHH
T ss_pred EecCCCCCcHHHHHHHHHHHHHHh
Confidence 99876 67889999999998876
No 40
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=99.65 E-value=1.8e-16 Score=146.82 Aligned_cols=103 Identities=28% Similarity=0.463 Sum_probs=91.2
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.++.+||++||||.|++|++++.|+++|..... ..|++++|+|||+||++|.+||.+++.++++|+++|++++.+.+.
T Consensus 56 ~~d~ii~g~pt~g~G~~p~~~~~f~~~l~~~~~--~~l~~k~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~v~~~~~ 133 (167)
T 1ykg_A 56 SEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKA--PKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVD 133 (167)
T ss_dssp GCSEEEEEEECBGGGBCCGGGHHHHHHHTSTTC--CCCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCEESSCCEE
T ss_pred cCCeEEEEEcccCCCcCChhHHHHHHHHHhccc--cccCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHCCCeEeeccee
Confidence 478999999999999999999999999976321 238899999999999999999999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHhhc
Q 008647 82 GDDDQCIEDDFTAWRELVWPELDQLLR 108 (558)
Q Consensus 82 ~d~~~~~~~~~~~W~~~l~~~l~~~~~ 108 (558)
+|+ +.+..++.|.+++++.|...++
T Consensus 134 ~d~--~~~~~~~~w~~~l~~~l~~~~~ 158 (167)
T 1ykg_A 134 ADV--EYQAAASEWRARVVDALKSRAP 158 (167)
T ss_dssp ECT--TCHHHHHHHHHHHHHHHHTCC-
T ss_pred cCC--CcHHHHHHHHHHHHHHHHhhcC
Confidence 883 4789999999999999876544
No 41
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=99.48 E-value=2.3e-14 Score=129.64 Aligned_cols=96 Identities=19% Similarity=0.174 Sum_probs=84.5
Q ss_pred CCcEEEEEeccCCC--CCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecC
Q 008647 2 LHSIYLRLTCRYGD--GEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPL 79 (558)
Q Consensus 2 ~~~~~i~~~sT~G~--G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~ 79 (558)
.++.+||++||||. |++|++++.|+++|.... +.+++|+|||+||++|..||.+++.++++|+++|++.+.+.
T Consensus 49 ~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~~~-----l~~k~~~vfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~ 123 (148)
T 3f6r_A 49 GYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDRIG-----LAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGATIIAEG 123 (148)
T ss_dssp TCSEEEEEECEECSSSCEECHHHHHHHTTGGGTC-----CTTCEEEEEEEECTTSSSTTTHHHHHHHHHHHTTCEECSCC
T ss_pred cCCEEEEEecccCCCCCCCcHHHHHHHHHhhccC-----CCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHHcCCEEeecc
Confidence 57899999999999 999999999999997643 88999999999999999999999999999999999999888
Q ss_pred cccCCCC-CchhHHHHHHHHHHHH
Q 008647 80 GLGDDDQ-CIEDDFTAWRELVWPE 102 (558)
Q Consensus 80 ~~~d~~~-~~~~~~~~W~~~l~~~ 102 (558)
..++... +....++.|.+++++.
T Consensus 124 ~~~~~~p~~~~~~~~~~~~~l~~~ 147 (148)
T 3f6r_A 124 LKMEGDASNDPEAVASFAEDVLKQ 147 (148)
T ss_dssp EEEESSGGGCHHHHHHHHHHHHHT
T ss_pred eEeecCcchHHHHHHHHHHHHHhh
Confidence 8777654 2567788888777653
No 42
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=99.36 E-value=6.7e-13 Score=119.74 Aligned_cols=94 Identities=22% Similarity=0.273 Sum_probs=83.1
Q ss_pred CcEEEEEeccCCCCC--CCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCc
Q 008647 3 HSIYLRLTCRYGDGE--PTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 80 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~--~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~ 80 (558)
++.+||+++|||.|. +|++++.|+++|.... +.+++++|||+||++|..||.+.+.++++|.++|++.+.+..
T Consensus 49 ~d~ii~~~p~y~~g~~~~p~~~~~fl~~l~~~~-----l~~k~~~v~~~g~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~ 123 (147)
T 1f4p_A 49 FDLVLLGCSTWGDDSIELQDDFIPLFDSLEETG-----AQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQDGL 123 (147)
T ss_dssp CSEEEEEECEECSSSCEECTTTHHHHHTGGGSC-----CTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCE
T ss_pred CCEEEEEeCCCCCCCcCCChhHHHHHHHHHhcc-----cCCCEEEEEeecCCChHHHHHHHHHHHHHHHHcCCeEhhccc
Confidence 889999999999999 9999999999997643 789999999999999977999999999999999999998877
Q ss_pred ccCCCCC-chhHHHHHHHHHHH
Q 008647 81 LGDDDQC-IEDDFTAWRELVWP 101 (558)
Q Consensus 81 ~~d~~~~-~~~~~~~W~~~l~~ 101 (558)
.+|...+ ....+.+|.+++++
T Consensus 124 ~~~~~p~~~~~~~~~~~~~l~~ 145 (147)
T 1f4p_A 124 RIDGDPRAARDDIVGWAHDVRG 145 (147)
T ss_dssp EEESCGGGGHHHHHHHHHHHHT
T ss_pred ccccCchhHHHHHHHHHHHHHh
Confidence 7775543 56788999888764
No 43
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=99.35 E-value=1.1e-12 Score=122.83 Aligned_cols=101 Identities=21% Similarity=0.387 Sum_probs=85.1
Q ss_pred CCcEEEEEeccCCCCCCC--------ccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcC-c-hHHHHHHHHHHHHHHhC
Q 008647 2 LHSIYLRLTCRYGDGEPT--------DNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQ-Y-EHFNKIGIVLDEELCKQ 71 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p--------~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~-y-~~f~~~~~~l~~~l~~l 71 (558)
.|+.|||+++|||.|++| ++++.|+++|.... |++++++|||+||+. | ++||.+++.++++|.++
T Consensus 47 ~~d~ii~g~pty~~G~~pg~~~~~~~~~~~~f~~~l~~~~-----l~gk~~avfg~g~~~~~~~~f~~a~~~l~~~l~~~ 121 (182)
T 2wc1_A 47 AYDFLILGTPTLGDGQLPGLSANAASESWEEFLPRIADQD-----FSGKTIALFGLGDQVTYPLEFVNALFFLHEFFSDR 121 (182)
T ss_dssp HCSEEEEEEECBTTTBCSSGGGTCSSCCHHHHGGGGTTCC-----CTTCEEEEEEECCTTTCTTSTTTHHHHHHHHHHTT
T ss_pred hCCeEEEEEeeCCCCCCCccccccchhHHHHHHHHhhhcc-----CCCCEEEEEEeCCCcccchhHHHHHHHHHHHHHHC
Confidence 478999999999999999 99999999986533 889999999999998 8 58999999999999999
Q ss_pred CCeEeecC-------------------ccc-CCCC---CchhHHHHHHHHHHHHHHHhh
Q 008647 72 GGARLVPL-------------------GLG-DDDQ---CIEDDFTAWRELVWPELDQLL 107 (558)
Q Consensus 72 Ga~~i~~~-------------------~~~-d~~~---~~~~~~~~W~~~l~~~l~~~~ 107 (558)
||+.+.+. +.+ |..+ ..+..++.|.++|++.|...+
T Consensus 122 G~~~v~~~~~~g~~~~~~~~~~~~~~~gl~~d~~~~~~~~~~~~~~w~~~l~~~l~~~~ 180 (182)
T 2wc1_A 122 GANVVGRWPAKGYGFEDSLAVVEGEFLGLALDQDNQAALTPERLKGWLSLIAADFGLVL 180 (182)
T ss_dssp TCEEECCEECTTSCCSCCTTEETTEESSEEECTTTCGGGHHHHHHHHHHHTHHHHTCCC
T ss_pred CCEEEEeecCCCcCcccchhhhcCceeeeeccCCCCccccHHHHHHHHHHHHHHHhccc
Confidence 99988752 443 3222 258889999999999886543
No 44
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=99.35 E-value=1.5e-12 Score=121.78 Aligned_cols=98 Identities=21% Similarity=0.289 Sum_probs=82.6
Q ss_pred CCcEEEEEeccCCCCCCC--------ccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcC-c-hHHHHHHHHHHHHHHhC
Q 008647 2 LHSIYLRLTCRYGDGEPT--------DNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQ-Y-EHFNKIGIVLDEELCKQ 71 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p--------~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~-y-~~f~~~~~~l~~~l~~l 71 (558)
.|+.+||++||||.|++| ++++.|+++|.... |++++++|||+||+. | .+||.+++.++++|.++
T Consensus 46 ~~d~iilg~pt~~~G~~pg~~~~~~~~~~~~fl~~l~~~~-----l~gk~~a~fg~g~~~~y~~~~~~a~~~l~~~l~~~ 120 (179)
T 1yob_A 46 QYQFLILGTPTLGEGELPGLSSDAENESWEEFLPKIEGLD-----FSGKTVALFGLGDQVGYPENYLDALGELYSFFKDR 120 (179)
T ss_dssp TCSEEEEEEECBTTTBCSSGGGTCSSCCHHHHHHHHTTCC-----CTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTT
T ss_pred cCCEEEEEeccCCCCcCCcccccccchHHHHHHHHhhhcc-----cCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHC
Confidence 588999999999999999 99999999997643 889999999999998 9 58999999999999999
Q ss_pred CCeEeecC-------------------cc-cCCCC---CchhHHHHHHHHHHHHHH
Q 008647 72 GGARLVPL-------------------GL-GDDDQ---CIEDDFTAWRELVWPELD 104 (558)
Q Consensus 72 Ga~~i~~~-------------------~~-~d~~~---~~~~~~~~W~~~l~~~l~ 104 (558)
||+.+.+. +. .|..+ ..++.++.|.+++++.|.
T Consensus 121 G~~~~~~~~~~g~~~~~s~~~~~~~f~gl~~d~~~~~~~~~~~i~~w~~~l~~~~~ 176 (179)
T 1yob_A 121 GAKIVGSWSTDGYEFESSEAVVDGKFVGLALDLDNQSGKTDERVAAWLAQIAPEFG 176 (179)
T ss_dssp TCEEECCBCCTTCCCSCCTTBSSSSBSSEEECTTTCGGGHHHHHHHHHHHHGGGGT
T ss_pred CCEEEEeeccCCCCcccchhhhcCceeccccCCCCCCcccHHHHHHHHHHHHHHHh
Confidence 99988653 32 34322 368899999998876553
No 45
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=99.31 E-value=4.6e-12 Score=117.70 Aligned_cols=97 Identities=24% Similarity=0.345 Sum_probs=81.2
Q ss_pred CCcEEEEEeccCCCCCC----CccHHHHH-HHHhcCCCCCCCCCCceEEEEeecCcC-c-hHHHHHHHHHHHHHHhCCCe
Q 008647 2 LHSIYLRLTCRYGDGEP----TDNAARFY-KWFTEGNDRGPWLQQLKFGVFGLGNRQ-Y-EHFNKIGIVLDEELCKQGGA 74 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~----p~n~~~f~-~~l~~~~~~~~~l~~~~~avfGlGds~-y-~~f~~~~~~l~~~l~~lGa~ 74 (558)
.|+.+||++||||.|++ |+++..|+ +.|.... |++++|+|||+||+. | ++||.+++.++++|.++||+
T Consensus 45 ~~d~ii~g~pt~~~G~~~~~~p~~~~~fl~~~l~~~~-----l~gk~~avfg~g~~~~y~~~f~~a~~~l~~~l~~~G~~ 119 (173)
T 2fcr_A 45 DYDLLFLGAPTWNTGADTERSGTSWDEFLYDKLPEVD-----MKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAK 119 (173)
T ss_dssp GCSEEEEEEECCSTTCSSCCSCSTHHHHHHHTGGGCC-----CTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCE
T ss_pred cCCEEEEEEeecCCCCcCccCcHHHHHHHHhhccccc-----cCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCE
Confidence 47899999999999999 99999999 8887644 889999999999998 8 68999999999999999999
Q ss_pred EeecC-------------------cc-cCC--CC-CchhHHHHHHHHHHHHH
Q 008647 75 RLVPL-------------------GL-GDD--DQ-CIEDDFTAWRELVWPEL 103 (558)
Q Consensus 75 ~i~~~-------------------~~-~d~--~~-~~~~~~~~W~~~l~~~l 103 (558)
.+.+. +. .|. ++ ..+..++.|.+++.+.|
T Consensus 120 ~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~i~~w~~~i~~~~ 171 (173)
T 2fcr_A 120 PVGFSNPDDYDYEESKSVRDGKFLGLPLDMVNDQIPMEKRVAGWVEAVVSET 171 (173)
T ss_dssp EECCBCGGGSCCSCCTTEETTEESSEEEETTTCSSCHHHHHHHHHHHHHHHH
T ss_pred EEeecccCCcccccchhhhCCeeeeeeecCCCCccccHHHHHHHHHHHHHHh
Confidence 88652 11 121 22 46888999999987765
No 46
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=99.28 E-value=3.2e-12 Score=119.02 Aligned_cols=99 Identities=20% Similarity=0.271 Sum_probs=82.7
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcC-c-hHHHHHHHHHHHHHHhCCCeEeecC
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQ-Y-EHFNKIGIVLDEELCKQGGARLVPL 79 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~-y-~~f~~~~~~l~~~l~~lGa~~i~~~ 79 (558)
.|+++||+++|||.|++|+++..|+++|.... |++++++|||+||+. | ++||.+.+.++++|.+.||+.+...
T Consensus 45 ~~d~ii~g~pt~~~G~~p~~~~~f~~~l~~~~-----l~gk~vavfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~ 119 (175)
T 1ag9_A 45 AYDILLLGIPTWYYGEAQCDWDDFFPTLEEID-----FNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHW 119 (175)
T ss_dssp TCSEEEEECCEETTTEECHHHHHHHHHHTTCC-----CTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTCEECCCE
T ss_pred hCCEEEEEEeecCCCcChHHHHHHHhhhhhcc-----cCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 58899999999999999999999999997643 889999999999986 8 7899999999999999999887531
Q ss_pred --------------------cc-cCCCC---CchhHHHHHHHHHHHHHHH
Q 008647 80 --------------------GL-GDDDQ---CIEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 80 --------------------~~-~d~~~---~~~~~~~~W~~~l~~~l~~ 105 (558)
+. .|... ..+..++.|.+++++.+..
T Consensus 120 ~~~g~~~~~s~~~~~~~~~~gl~~~~~~~~~~~~~~i~~w~~~i~~~~~~ 169 (175)
T 1ag9_A 120 PTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKWVKQISEELHL 169 (175)
T ss_dssp ECTTCCCSCCSCEEETTEESSEEECTTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred cCCCcccccchheeeCCeEEeeecCCCCcccccHHHHHHHHHHHHHHhhh
Confidence 11 22211 2567899999999988765
No 47
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=99.17 E-value=4.7e-12 Score=116.52 Aligned_cols=94 Identities=19% Similarity=0.313 Sum_probs=75.9
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcC-ch-HHHHHHHHHHHHHHhCCCeEeecC
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQ-YE-HFNKIGIVLDEELCKQGGARLVPL 79 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~-y~-~f~~~~~~l~~~l~~lGa~~i~~~ 79 (558)
.|+.+||++||||.|++|+++..|+++|.... |++++|+|||+||+. |. +||.+++.++++|.+ |+.+.+.
T Consensus 44 ~~d~ii~g~pt~~~g~~p~~~~~f~~~l~~~~-----l~~k~~avf~~G~~~~y~~~~~~a~~~l~~~l~~--~~~~~~~ 116 (164)
T 2bmv_A 44 SFTKVILVAPTAGAGDLQTDWEDFLGTLEASD-----FANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA--GKVVGQT 116 (164)
T ss_dssp TCSEEEEEEEEETTTEECHHHHHHHTTCCTHH-----HHTSEEEEEEECCTTTCTTSTTTHHHHHHHHHTT--SEECCCE
T ss_pred hCCEEEEEECCcCCCcCcHHHHHHHHHHhhhh-----cCCCEEEEEEeCCcchhhHHHhHHHHHHHHHHhh--CEEEccc
Confidence 58899999999999999999999999886532 778999999999995 95 799999999999998 7777652
Q ss_pred -------------------cc-cCCCC---CchhHHHHHHHHHHHH
Q 008647 80 -------------------GL-GDDDQ---CIEDDFTAWRELVWPE 102 (558)
Q Consensus 80 -------------------~~-~d~~~---~~~~~~~~W~~~l~~~ 102 (558)
+. .|... ..++.+++|.+++++.
T Consensus 117 ~~~g~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~l~~~ 162 (164)
T 2bmv_A 117 STDGYHFEASKAVEGGKFVGLVIDEDNQDDLTDERISKWVEQVKGS 162 (164)
T ss_dssp ESTTCCCSCCTTEETTEESSEEECTTTCGGGHHHHHHHHHHHHTTT
T ss_pred cCCCccccchhhhhcCcccCccCCCCCccccCHHHHHHHHHHHHHh
Confidence 22 22222 2478899999887654
No 48
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=99.15 E-value=4.6e-11 Score=110.29 Aligned_cols=97 Identities=19% Similarity=0.304 Sum_probs=80.8
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCc-Cch-HHHHHHHHHHHHHHhCCCeEeecC
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNR-QYE-HFNKIGIVLDEELCKQGGARLVPL 79 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds-~y~-~f~~~~~~l~~~l~~lGa~~i~~~ 79 (558)
.|+.+||+++|||.|.+|++++.|+++|.... +++++++|||+|++ .|. +||.+.+.+++.|.++|++.+...
T Consensus 46 ~~d~ii~g~p~y~~g~~p~~~~~fl~~l~~~~-----l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~ 120 (169)
T 1obo_A 46 DYQYLIIGCPTLNIGELQSDWEGLYSELDDVD-----FNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYW 120 (169)
T ss_dssp GCSEEEEEEEEETTTEECHHHHHHHTTGGGCC-----CTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCE
T ss_pred hCCEEEEEEeeCCCCcCCHHHHHHHHHhhhcC-----cCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEee
Confidence 47899999999999999999999999987643 88999999999998 596 799999999999999999887541
Q ss_pred -------------------cc-cCC--CC-CchhHHHHHHHHHHHHH
Q 008647 80 -------------------GL-GDD--DQ-CIEDDFTAWRELVWPEL 103 (558)
Q Consensus 80 -------------------~~-~d~--~~-~~~~~~~~W~~~l~~~l 103 (558)
+. .+. ++ ..+..++.|.+++++.|
T Consensus 121 ~~~g~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~l 167 (169)
T 1obo_A 121 STDGYDFNDSKALRNGKFVGLALDEDNQSDLTDDRIKSWVAQLKSEF 167 (169)
T ss_dssp ECTTCCCSCCTTEETTEESSEEECTTTCGGGHHHHHHHHHHHHHHHH
T ss_pred cCCCcccccchhhcCCceeeEEeeCCCccccCHHHHHHHHHHHHHHh
Confidence 11 121 12 35788999999998876
No 49
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=99.14 E-value=4.1e-11 Score=110.64 Aligned_cols=97 Identities=21% Similarity=0.304 Sum_probs=80.7
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcC-ch-HHHHHHHHHHHHHHhCCCeEeec-
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQ-YE-HFNKIGIVLDEELCKQGGARLVP- 78 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~-y~-~f~~~~~~l~~~l~~lGa~~i~~- 78 (558)
.|+.+||+++||+.|++|++++.|+++|.... ++++++++||+||+. |. .||.+.+.++++|.++||+.+..
T Consensus 46 ~~d~ii~g~pty~~g~~p~~~~~f~~~l~~~~-----l~gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~ 120 (169)
T 1czn_A 46 AYDYLIIGCPTWNVGELQSDWEGIYDDLDSVN-----FQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYW 120 (169)
T ss_dssp GCSEEEEECCEETTTEECHHHHHHGGGGGGSC-----CTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCE
T ss_pred hCCEEEEEecccCCCcCCHHHHHHHHHhhhhc-----cCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 47899999999999999999999999997543 889999999999995 95 79999999999999999988752
Q ss_pred --C----------------cc-cCCC--C-CchhHHHHHHHHHHHHH
Q 008647 79 --L----------------GL-GDDD--Q-CIEDDFTAWRELVWPEL 103 (558)
Q Consensus 79 --~----------------~~-~d~~--~-~~~~~~~~W~~~l~~~l 103 (558)
. +. .|.. + ..++.++.|.+++++.|
T Consensus 121 ~~~g~~~~~s~~~~~~~~~gl~~~~~~~~~~~~~~~~~w~~~~~~~~ 167 (169)
T 1czn_A 121 PIEGYDFNESKAVRNNQFVGLAIDEDNQPDLTKNRIKTWVSQLKSEF 167 (169)
T ss_dssp ECTTCCCSCCTTEETTEESSEEECTTTCGGGHHHHHHHHHHHHHHHT
T ss_pred cCCCcceecchheeCCeeeeeeecCCCccccCHHHHHHHHHHHHHHh
Confidence 1 11 2322 2 45788999999988765
No 50
>2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A*
Probab=99.13 E-value=2.3e-11 Score=105.85 Aligned_cols=85 Identities=13% Similarity=0.109 Sum_probs=64.7
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCch-HHHHHHHHHHHHHHhCCCeEeecCc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYE-HFNKIGIVLDEELCKQGGARLVPLG 80 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~-~f~~~~~~l~~~l~~lGa~~i~~~~ 80 (558)
.++.+||++||||.|++|+++..|++. +++++|+|||+||+.|. .||.+++.++++|.. ...+..
T Consensus 32 ~~~~ii~g~pt~~~g~~p~~~~~fl~~----------~~~~~~~v~g~G~~~y~~~~~~~~~~l~~~~~~---~~~~~~- 97 (119)
T 2xod_A 32 IDEDFILITYTTGFGNVPERVLEFLER----------NNEKLKGVSASGNRNWGDMFGASADKISAKYEV---PIVSKF- 97 (119)
T ss_dssp CCSCEEEEECCBTTTBCCHHHHHHHHH----------HGGGEEEEEEEECGGGGGGTTHHHHHHHHHHTC---CEEEEE-
T ss_pred cCCCEEEEEeecCCCcCCHHHHHHHHH----------cCCCEEEEEEeCCChHHHHHHHHHHHHHHHhCC---ccEEEE-
Confidence 478999999999999999999999865 35689999999999995 599999999999754 223222
Q ss_pred ccCCCCCchhHHHHHHHHHH
Q 008647 81 LGDDDQCIEDDFTAWRELVW 100 (558)
Q Consensus 81 ~~d~~~~~~~~~~~W~~~l~ 100 (558)
.+....+....+++|.++++
T Consensus 98 ~~~~~~~d~~~~~~~~~~i~ 117 (119)
T 2xod_A 98 ELSGTNNDVEYFKERVREIA 117 (119)
T ss_dssp ETTCCHHHHHHHHHHHHHHT
T ss_pred ecCCCHHHHHHHHHHHHHhc
Confidence 22222223456888987765
No 51
>1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7
Probab=98.98 E-value=5.4e-10 Score=99.73 Aligned_cols=86 Identities=17% Similarity=0.154 Sum_probs=64.1
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCc-hHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
++.+|+++||||.|++|+++.+|++.. .+..|||+|+||++| +.||.+++.+++++ |..-+ ...+
T Consensus 44 ~~~~ilv~pTyG~G~~P~~v~~Fl~~~----------~~~~~~V~g~Gd~~yg~~f~~a~~~i~~~~---~~~~~-~~~e 109 (139)
T 1rlj_A 44 DTPFVLVTYTTNFGQVPASTQSFLEKY----------AHLLLGVAASGNKVWGDNFAKSADTISRQY---QVPIL-HKFE 109 (139)
T ss_dssp CSCEEEEECCBGGGBCCHHHHHHHHHH----------GGGEEEEEEEECGGGGGGTTHHHHHHHHHH---TCCEE-EEEE
T ss_pred CCCEEEEEcCcCCCcCcHHHHHHHHhC----------CCCEEEEEecCCCcHHHHHHHHHHHHHHHc---CCCCc-ceEE
Confidence 467899999999999999999998531 246899999999999 88999999998776 44332 2222
Q ss_pred cCCCCCchhHHHHHHHHHHHH
Q 008647 82 GDDDQCIEDDFTAWRELVWPE 102 (558)
Q Consensus 82 ~d~~~~~~~~~~~W~~~l~~~ 102 (558)
.+-.......+.+|++++|.+
T Consensus 110 l~g~~~D~~~~~~~~~~~~~~ 130 (139)
T 1rlj_A 110 LSGTSKDVELFTQEVERVVTK 130 (139)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH
T ss_pred EcCCHHHHHHHHHHHHHHHHH
Confidence 221113456788999888753
No 52
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=98.85 E-value=9.1e-09 Score=91.37 Aligned_cols=88 Identities=11% Similarity=0.063 Sum_probs=71.9
Q ss_pred CCcEEEEEeccCCCCCCCc-cHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCc
Q 008647 2 LHSIYLRLTCRYGDGEPTD-NAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 80 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~-n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~ 80 (558)
.++.+||++||||.|.+|+ +++.|+++|... ++++++++||.|+..| |.+.+.++++|+++|++.+.+..
T Consensus 45 ~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~------l~~k~~~~f~t~g~~~---~~a~~~l~~~l~~~G~~~v~~~~ 115 (138)
T 5nul_A 45 NEDILILGCSAMTDEVLEESEFEPFIEEISTK------ISGKKVALFGSYGWGD---GKWMRDFEERMNGYGCVVVETPL 115 (138)
T ss_dssp TCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG------CTTCEEEEEEEESSSC---SHHHHHHHHHHHHTTCEECSCCE
T ss_pred hCCEEEEEcCccCCCCCChHHHHHHHHHHHhh------cCCCEEEEEEecCCCC---ChHHHHHHHHHHHCCCEEECCce
Confidence 5889999999999999997 999999999763 6899999999988765 78899999999999999997766
Q ss_pred ccCCCC--CchhHHHHHHHHH
Q 008647 81 LGDDDQ--CIEDDFTAWRELV 99 (558)
Q Consensus 81 ~~d~~~--~~~~~~~~W~~~l 99 (558)
.++... +. ...++|.+++
T Consensus 116 ~~~~~p~~~d-~~~~~~~~~l 135 (138)
T 5nul_A 116 IVQNEPDEAE-QDCIEFGKKI 135 (138)
T ss_dssp EEESSCGGGH-HHHHHHHHHH
T ss_pred EEecCCCHHH-HHHHHHHHHH
Confidence 666554 22 5555555443
No 53
>3n3a_C Protein NRDI; ribonucleotide reductase, four-helix bundle, dimanganese CLU flavoprotein, oxidoreductase; HET: FMN; 1.99A {Escherichia coli} PDB: 3n39_C* 3n3b_C*
Probab=98.50 E-value=6.8e-08 Score=86.33 Aligned_cols=85 Identities=20% Similarity=0.250 Sum_probs=62.5
Q ss_pred CcEEEEEeccCC----CCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCc-hHHHHHHHHHHHHHHhCCCeEee
Q 008647 3 HSIYLRLTCRYG----DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLV 77 (558)
Q Consensus 3 ~~~~i~~~sT~G----~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y-~~f~~~~~~l~~~l~~lGa~~i~ 77 (558)
.+.+|++++||| .|+.|+.+.+|++.+.. .+.-++|+|.||++| +.||.+++.+.+++.. ..+
T Consensus 59 ~ep~vlv~PTYg~g~~~G~vP~~v~dFl~~~~n--------~~~~~gVigsGN~nfg~~Fc~A~d~ia~k~~v---P~l- 126 (153)
T 3n3a_C 59 DEPYILIVPSYGGGGTAGAVPRQVIRFLNDEHN--------RALLRGVIASGNRNFGEAYGRAGDVIARKCGV---PWL- 126 (153)
T ss_dssp CSCEEEEEECCTTSSSSSSSCHHHHHHHTSHHH--------HHHEEEEEEEECGGGGGGTTHHHHHHHHHHTC---CEE-
T ss_pred CCCEEEEEeccCCCCcCCcCcHHHHHHHhhhcc--------cCcEEEEEecCCCchhHHHHHHHHHHHHHhCC---CeE-
Confidence 457899999999 59999999999876543 245799999999999 9999999999999862 222
Q ss_pred cCcccCCCC--CchhHHHHHHHHHHH
Q 008647 78 PLGLGDDDQ--CIEDDFTAWRELVWP 101 (558)
Q Consensus 78 ~~~~~d~~~--~~~~~~~~W~~~l~~ 101 (558)
.+.+-.. ...+.+.+|++++|+
T Consensus 127 --~kfEL~Gt~eDv~~v~~~~~~~~~ 150 (153)
T 3n3a_C 127 --YRFELMGTQSDIENVRKGVTEFWQ 150 (153)
T ss_dssp --EEEETTCCHHHHHHHHHHHHHHHH
T ss_pred --EEEeCCCCHHHHHHHHHHHHHHHh
Confidence 2223222 234556666666665
No 54
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=98.38 E-value=7e-07 Score=78.62 Aligned_cols=88 Identities=14% Similarity=0.078 Sum_probs=69.1
Q ss_pred CCcEEEEEeccCCCCCCCc-cHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCc
Q 008647 2 LHSIYLRLTCRYGDGEPTD-NAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 80 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~-n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~ 80 (558)
.++.+||+++||+.|.+|. +++.|++++.. .++++++++||.+... ||.+.+.++++|..+|++.+ +..
T Consensus 46 ~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~------~l~~k~~~~~~t~g~~---~~~~~~~l~~~l~~~g~~~~-~~~ 115 (137)
T 2fz5_A 46 SKDVILLGCPAMGSEELEDSVVEPFFTDLAP------KLKGKKVGLFGSYGWG---SGEWMDAWKQRTEDTGATVI-GTA 115 (137)
T ss_dssp TCSEEEEECCCBTTTBCCHHHHHHHHHHHGG------GCSSCEEEEEEEESSC---CSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred cCCEEEEEccccCCCCCCHHHHHHHHHHhhh------hcCCCEEEEEEecCCC---CchHHHHHHHHHHHCCCEEc-CcE
Confidence 5789999999999999998 59999999964 2789999999975433 78899999999999999888 444
Q ss_pred ccCCCCCchhHHHHHHHHH
Q 008647 81 LGDDDQCIEDDFTAWRELV 99 (558)
Q Consensus 81 ~~d~~~~~~~~~~~W~~~l 99 (558)
.++...+..+.+..|.+++
T Consensus 116 ~~~g~~~~~~~~~~~~~~l 134 (137)
T 2fz5_A 116 IVNEMPDNAPECKELGEAA 134 (137)
T ss_dssp EEESSSSSCTHHHHHHHHH
T ss_pred EEeeCCChHHHHHHHHHHH
Confidence 4433332266677777655
No 55
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=98.30 E-value=8.8e-07 Score=80.85 Aligned_cols=92 Identities=11% Similarity=-0.123 Sum_probs=71.3
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.|+.+||+++||| |.+|. +.|++.|.... +.++++++||.++. +|.+.+.++++|+++|++.+.+...
T Consensus 51 ~~d~ii~Gspty~-g~~p~--~~fl~~l~~~~-----l~gk~v~~fgs~g~----~g~a~~~l~~~l~~~G~~~v~~~~~ 118 (161)
T 3hly_A 51 SARGIVLGTPPSQ-PSEAV--ATALSTIFAAA-----HNKQAIGLFDSYGG----DDEPIDALLAQFRNLGLHTAFPPIR 118 (161)
T ss_dssp HCSEEEEECCBSS-CCHHH--HHHHHHHHHHC-----CTTSEEEEECCCCS----SBCCHHHHHHHHHHTTCEESSSCBC
T ss_pred hCCEEEEEcCCcC-CchhH--HHHHHHHHhhh-----hCCCEEEEEEcCCC----CcHHHHHHHHHHHHCCCEEecCceE
Confidence 4789999999997 88875 88999887643 78999999997654 3788999999999999999877665
Q ss_pred cCCCC--CchhHHHHHHHHHHHHHHH
Q 008647 82 GDDDQ--CIEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 82 ~d~~~--~~~~~~~~W~~~l~~~l~~ 105 (558)
+.... +.......|.+.+...|.+
T Consensus 119 ~~~~P~~~dl~~~~~~g~~la~~l~~ 144 (161)
T 3hly_A 119 VKDQPTEAIYQQCEESGTDLGQWLTR 144 (161)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeCCCHHHHHHHHHHHHHHHHHHHh
Confidence 54443 2345566777777666653
No 56
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=98.29 E-value=4.9e-07 Score=82.43 Aligned_cols=92 Identities=7% Similarity=-0.148 Sum_probs=72.3
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
+++.+||.++||+ |++| +..|++.|.... +.++.+++||.++ .+|.+.+.+.++|+++|++.+.+...
T Consensus 56 ~~d~ii~Gspty~-g~~p--~~~~l~~l~~~~-----~~~k~va~fgs~g----~~~~a~~~l~~~l~~~G~~~v~~~~~ 123 (159)
T 3fni_A 56 RCTGLVIGMSPAA-SAAS--IQGALSTILGSV-----NEKQAVGIFETGG----GDDEPIDPLLSKFRNLGLTTAFPAIR 123 (159)
T ss_dssp TEEEEEEECCBTT-SHHH--HHHHHHHHHHHC-----CTTSEEEEECCSS----SCBCCHHHHHHHHHHTTCEESSSCBC
T ss_pred hCCEEEEEcCcCC-CCcc--HHHHHHHHHhhc-----ccCCEEEEEEcCC----CCcHHHHHHHHHHHHCCCEEecCceE
Confidence 4789999999997 8877 488999887654 6899999999764 34678899999999999999887766
Q ss_pred cCCCC--CchhHHHHHHHHHHHHHHH
Q 008647 82 GDDDQ--CIEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 82 ~d~~~--~~~~~~~~W~~~l~~~l~~ 105 (558)
+.... +.....+.|.+.+.+.+.+
T Consensus 124 ~~~~P~~~dl~~~~~~g~~la~~~~~ 149 (159)
T 3fni_A 124 IKQTPTENTYKLCEEAGTDLGQWVTR 149 (159)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 66554 2345666787777766655
No 57
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=97.72 E-value=4.8e-05 Score=79.39 Aligned_cols=94 Identities=13% Similarity=-0.059 Sum_probs=72.8
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.++.+||+++|||.|.+| .++.|+++|.... +.++.+++||.+ ..||.+.+.+.+.|.++|++.+.+...
T Consensus 303 ~~d~ii~gsp~~~~~~~~-~~~~~l~~l~~~~-----l~~k~~~~f~t~----g~~~~a~~~l~~~l~~~G~~~~~~~~~ 372 (402)
T 1e5d_A 303 DAGAVIVGSPTHNNGILP-YVAGTLQYIKGLR-----PQNKIGGAFGSF----GWSGESTKVLAEWLTGMGFDMPATPVK 372 (402)
T ss_dssp TCSEEEEECCCBTTBCCH-HHHHHHHHHHHTC-----CCSCEEEEEEEE----SSSCHHHHHHHHHHHHTTCBCCSCCEE
T ss_pred HCCEEEEECCccCCCchH-HHHHHHHHhhhcc-----cCCCEEEEEEcC----CCccHHHHHHHHHHHHCCCEEecCceE
Confidence 578999999999877766 6999999997654 789999999974 346889999999999999988864444
Q ss_pred cCCCC--CchhHHHHHHHHHHHHHHH
Q 008647 82 GDDDQ--CIEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 82 ~d~~~--~~~~~~~~W~~~l~~~l~~ 105 (558)
++... +....+..|.+++...+.+
T Consensus 373 ~~~~p~~~~~~~~~~~~~~l~~~l~~ 398 (402)
T 1e5d_A 373 VKNVPTHADYEQLKTMAQTIARALKA 398 (402)
T ss_dssp EESSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeCCCHHHHHHHHHHHHHHHHHHhh
Confidence 44332 2345677888777766654
No 58
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=97.66 E-value=3.9e-05 Score=79.94 Aligned_cols=91 Identities=7% Similarity=-0.215 Sum_probs=68.1
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecC-c
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPL-G 80 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~-~ 80 (558)
.++.+||+++||+.|.+| .++.|+++|.... ++++.+++||.+ ..||.+.+.++++|.++|++.+.+. .
T Consensus 302 ~~d~ii~g~p~y~~~~~~-~~~~~l~~l~~~~-----~~~k~~~~~~s~----g~~~~a~~~l~~~l~~~g~~~~~~~~~ 371 (398)
T 1ycg_A 302 DARAVLVGSPTINNDILP-VVSPLLDDLVGLR-----PKNKVGLAFGAY----GWGGGAQKILEERLKAAKIELIAEPGP 371 (398)
T ss_dssp HCSEEEEECCCBTTBCCG-GGHHHHHHHHHHC-----CSSCEEEEEEEE----SSSCCHHHHHHHHHHHTTCEESCSSCC
T ss_pred HCCEEEEECCccCccchH-HHHHHHHHHhccc-----cCCCEEEEEEeC----CCchHHHHHHHHHHHHCCeEEecCceE
Confidence 468999999999877777 5999999997643 789999999974 4479999999999999999888754 4
Q ss_pred ccCCCC--CchhHHHHHHHHHHHH
Q 008647 81 LGDDDQ--CIEDDFTAWRELVWPE 102 (558)
Q Consensus 81 ~~d~~~--~~~~~~~~W~~~l~~~ 102 (558)
.++... .....++.|.+++...
T Consensus 372 ~~~~~p~~~~~~~~~~~~~~l~~~ 395 (398)
T 1ycg_A 372 TVQWVPRGEDLQRCYELGRKIAAR 395 (398)
T ss_dssp EEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHHHHH
Confidence 343332 2334555666555443
No 59
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=97.22 E-value=0.00033 Score=73.01 Aligned_cols=94 Identities=12% Similarity=-0.117 Sum_probs=68.9
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.++.+||+++||+ |.+|..++.|++++...... . |+++++++||.|+.. +.+.+.+.+.|..+|++.+.+ ..
T Consensus 307 ~~d~iiigsP~y~-~~~~~~~k~~ld~l~~~~~~-~-l~~k~~~~~~~~g~~----~~a~~~l~~~l~~~g~~~~~~-~~ 378 (404)
T 2ohh_A 307 ESGAIALGAPTIY-DEPYPSVGDLLMYLRGLKFN-R-TLTRKALVFGSMGGN----GGATGTMKELLAEAGFDVACE-EE 378 (404)
T ss_dssp TCSEEEEECCEET-TEECTHHHHHHHHHHHHCGG-G-TCCEEEEEEEEESSS----CCHHHHHHHHHHHTTEEEEEE-EE
T ss_pred HCCEEEEECcccc-ccchHHHHHHHHHhhhcccc-c-cCCCEEEEEEecCCC----ChhHHHHHHHHHHCCCEEEeE-EE
Confidence 5789999999996 55666799999999764322 2 689999999998875 567789999999999988876 33
Q ss_pred cCCCC--CchhHHHHHHHHHHHHH
Q 008647 82 GDDDQ--CIEDDFTAWRELVWPEL 103 (558)
Q Consensus 82 ~d~~~--~~~~~~~~W~~~l~~~l 103 (558)
..... +.....+.|.+++.+.+
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~ 402 (404)
T 2ohh_A 379 VYYVPTGDELDACFEAGRKLAAEI 402 (404)
T ss_dssp EESSCCHHHHHHHHHHHHHHHHHH
T ss_pred EeeCCCHHHHHHHHHHHHHHHHHH
Confidence 33222 23455667776665443
No 60
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=97.09 E-value=0.0016 Score=60.65 Aligned_cols=75 Identities=11% Similarity=-0.186 Sum_probs=61.0
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeec
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 78 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~ 78 (558)
.++.|||+++||. |.+|..++.|++++.... ....|.++++++|+.+...+..++.+...+...|..+|++.+.+
T Consensus 71 ~aD~ii~gsP~y~-~~~~~~lk~~ld~~~~~~-~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~~~ 145 (200)
T 2a5l_A 71 NCAGLALGSPTRF-GNMASPLKYFLDGTSSLW-LTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGI 145 (200)
T ss_dssp TCSEEEEEEECBT-TBCCHHHHHHHHTCHHHH-HHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred HCCEEEEEcChhc-cCccHHHHHHHHHHHHHh-hccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEECC
Confidence 5789999999995 889999999999886420 00127899999999998877556888899999999999987644
No 61
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=96.93 E-value=0.0016 Score=68.11 Aligned_cols=94 Identities=7% Similarity=-0.201 Sum_probs=68.2
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCC-CCceEEEEeecCcCchHHHHHHHHHHHHHHh-CCCeEeecC
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWL-QQLKFGVFGLGNRQYEHFNKIGIVLDEELCK-QGGARLVPL 79 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l-~~~~~avfGlGds~y~~f~~~~~~l~~~l~~-lGa~~i~~~ 79 (558)
.++.+||+++||+. .+|..++.|++++.... + +++++++||.|+.. +.+.+.+...|.. +|++.+.+.
T Consensus 307 ~~D~iiigsP~y~~-~~~~~~k~fld~l~~~~-----~~~~K~~~~~~t~g~~----~~a~~~l~~~l~~~~g~~~~~~~ 376 (414)
T 2q9u_A 307 DSGAVAFASPTLNN-TMMPSVAAALNYVRGLT-----LIKGKPAFAFGAFGWS----NRAVPDIVAELRDGCKADVYDEK 376 (414)
T ss_dssp TCSEEEEECCCBTT-BCCHHHHHHHHHHHHHT-----TTTTSBEEEEEEESSS----CCHHHHHHHHHHHTSCCBCCCSS
T ss_pred hCCEEEEEcCccCc-CchHHHHHHHHHHHhhc-----ccCCCEEEEEEecCCC----chhHHHHHHHHHhhcCcEEccCc
Confidence 57899999999964 55556999999997643 5 78999999998764 4577899999999 999877643
Q ss_pred -cccCCCC--CchhHHHHHHHHHHHHHHH
Q 008647 80 -GLGDDDQ--CIEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 80 -~~~d~~~--~~~~~~~~W~~~l~~~l~~ 105 (558)
..+.... +.......|.+++...+.+
T Consensus 377 ~~~~~~~p~~~~~~~~~~~g~~l~~~~~~ 405 (414)
T 2q9u_A 377 GITFKFNYTEELLEQAYNAGVDLGKRAIA 405 (414)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEeeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 2345566777766665554
No 62
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=96.69 E-value=0.0048 Score=55.79 Aligned_cols=82 Identities=12% Similarity=-0.012 Sum_probs=57.7
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEee-cCcCchHHHHHHHHHHHHHHhCCCeEeecCc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARLVPLG 80 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGl-Gds~y~~f~~~~~~l~~~l~~lGa~~i~~~~ 80 (558)
.|+.|||.++|| .|.+|..+..|.+.+ . ++++++++|+. |.+.+. .+.+.+.+.|. ||+ +.+-.
T Consensus 78 ~yd~iilG~P~~-~g~~~~~~~~fl~~~---~-----l~gk~v~~f~t~g~~~~g---~~~~~l~~~l~--~~~-~~~g~ 142 (162)
T 3klb_A 78 KYEVLFVGFPVW-WYIAPTIINTFLESY---D-----FAGKIVVPFATSGGSGIG---NCEKNLHKAYP--DIV-WKDGK 142 (162)
T ss_dssp GCSEEEEEEECB-TTBCCHHHHHHHHTS---C-----CTTCEEEEEEECSSCCSH---HHHHHHHHHCT--TSE-ECCCE
T ss_pred hCCEEEEEcccc-cCCCCHHHHHHHHhc---C-----CCCCEEEEEEEeCCCCcc---HHHHHHHHHcC--CCE-eecce
Confidence 488999999999 589998888886653 2 78999999987 666663 34566666664 554 33433
Q ss_pred ccCCCCCchhHHHHHHHHH
Q 008647 81 LGDDDQCIEDDFTAWRELV 99 (558)
Q Consensus 81 ~~d~~~~~~~~~~~W~~~l 99 (558)
.+.. ...+.+++.|++++
T Consensus 143 ~~~g-~~~~~~v~~W~~~~ 160 (162)
T 3klb_A 143 LLNG-QITRDLVTEWFEKI 160 (162)
T ss_dssp ECCS-CCCHHHHHHHHHHT
T ss_pred EEeC-CCCHHHHHHHHHHh
Confidence 3322 24578999998764
No 63
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=96.59 E-value=0.0099 Score=54.95 Aligned_cols=102 Identities=8% Similarity=-0.142 Sum_probs=68.9
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEee-cCcCchHHHHHHHHHHHHHHhCCCeEeec--
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARLVP-- 78 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGl-Gds~y~~f~~~~~~l~~~l~~lGa~~i~~-- 78 (558)
.++.+||+++|| .|.+|..++.|++++..... ..+.++++++||. |+.. ..+..+.+.+...|..+|...+..
T Consensus 52 ~aD~ii~gsP~y-~g~~~~~lk~fld~~~~~~~--~~l~gk~~~~~~t~g~~~-g~~~~~l~~l~~~l~~~g~~~~~~~~ 127 (188)
T 2ark_A 52 WADGLAVGSPTN-MGLVSWKMKRFFDDVLGDLW--GEIDGKIACAFSSSGGWG-GGNEVACMSILTMLMNFGFLVFGVTD 127 (188)
T ss_dssp HCSEEEEEEECB-TTBCCHHHHHHHHHTGGGTT--TSCTTCEEEEEEEESSBT-SSHHHHHHHHHHHHHHTTCEECCEEE
T ss_pred hCCEEEEEeCcc-CCcCCHHHHHHHHHHhhhhH--HHhCCCeEEEEEECCCCC-CCHHHHHHHHHHHHHHCCcEEeCCCc
Confidence 478999999999 89999999999999876211 2288999999999 5543 224666777888888888855421
Q ss_pred ----Cc--------ccCCC-CCchhHHHHHHHHHHHHHHHhh
Q 008647 79 ----LG--------LGDDD-QCIEDDFTAWRELVWPELDQLL 107 (558)
Q Consensus 79 ----~~--------~~d~~-~~~~~~~~~W~~~l~~~l~~~~ 107 (558)
.. .+.-. .+.......|.+++...+.+..
T Consensus 128 ~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~g~~la~~~~~~~ 169 (188)
T 2ark_A 128 YVGKKFTLHYGAVVAGEPRSEEEKEACRRLGRRLAEWVAIFV 169 (188)
T ss_dssp EEETTEEESSSEEEESSCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccCCCcceeecCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 11111 1123455677777777766653
No 64
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=96.57 E-value=0.0046 Score=57.56 Aligned_cols=73 Identities=16% Similarity=-0.002 Sum_probs=59.8
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
.++.+||.++||. |.+|..++.|++++...- ....+.++++++|+.+.+.+..+..+...+...|..+|..-+
T Consensus 54 ~~D~ii~gsP~y~-g~~~~~~k~fld~~~~~~-~~~~l~gK~~~~f~s~g~~~g~~~~~l~~l~~~l~~~G~~~v 126 (193)
T 3d7n_A 54 AADAIIFGTPTYM-GGPSWQFKKFADASSKPW-FSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHGGLWV 126 (193)
T ss_dssp HCSEEEEEEEEET-TEECHHHHHHHHHTHHHH-HTTTTTTCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred HCCEEEEEeCccC-CCccHHHHHHHHHhhhhc-cccccCCCEEEEEEECCCCCCChHHHHHHHHHHHHHCCCEEe
Confidence 4789999999995 999999999999986310 012278999999999988886678889999999999998654
No 65
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=96.53 E-value=0.0079 Score=54.95 Aligned_cols=82 Identities=11% Similarity=0.016 Sum_probs=58.7
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.|+.|||+++||+ |.+|..+..|.+.+ . ++++++++|+.+-... +..+.+.+.+.|. ||+ +.+-..
T Consensus 87 ~yD~iilg~Pvy~-g~~~~~~~~fl~~~---~-----l~gk~v~~f~t~g~~~--~g~a~~~l~~~l~--~~~-~~~g~~ 152 (171)
T 4ici_A 87 TYDVVFIGYPIWW-DLAPRIINTFIEGH---S-----LKGKTVVPFATSGGSS--IGNSATVLKKTYP--DLN-WKEGRL 152 (171)
T ss_dssp GCSEEEEEEECBT-TBCCHHHHHHHHHS---C-----CTTSEEEEEEECSSCC--SHHHHHHHHHHST--TSE-ECCCEE
T ss_pred HCCEEEEeccccc-CCchHHHHHHHHHc---C-----CCcCEEEEEEecCCCC--cchHHHHHHHHcC--CCe-eccCeE
Confidence 5789999999996 88898888887765 2 7899999999964322 2456666777765 554 444444
Q ss_pred cCCCCCchhHHHHHHHHH
Q 008647 82 GDDDQCIEDDFTAWRELV 99 (558)
Q Consensus 82 ~d~~~~~~~~~~~W~~~l 99 (558)
.+. ..+.++..|++++
T Consensus 153 ~~~--~~~~~i~~Wl~~~ 168 (171)
T 4ici_A 153 LNR--TDEKAIRAWLDVI 168 (171)
T ss_dssp CSS--CCHHHHHHHHHHH
T ss_pred ecC--CCHHHHHHHHHHh
Confidence 433 2578899998764
No 66
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=96.23 E-value=0.0087 Score=55.49 Aligned_cols=73 Identities=11% Similarity=-0.144 Sum_probs=57.5
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEee
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 77 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~ 77 (558)
.++.+||.++|| .|.+|..++.|++++..... ...+.++++++|+.+... .....+.+.+...|..+|+..+-
T Consensus 68 ~aD~ii~gsP~y-~~~~~~~lk~~ld~~~~~~~-~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~ 140 (198)
T 3b6i_A 68 DYDAIIFGTPTR-FGNMSGQMRTFLDQTGGLWA-SGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVP 140 (198)
T ss_dssp GCSEEEEEEEEE-TTEECHHHHHHHTTCHHHHH-HTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECC
T ss_pred HCCEEEEEeChh-cCCchHHHHHHHHHhhhhhh-hcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEEC
Confidence 478999999999 79999999999998854210 012789999999998775 44556778888899999987664
No 67
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=96.19 E-value=0.0047 Score=57.69 Aligned_cols=69 Identities=16% Similarity=0.019 Sum_probs=54.2
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEee
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 77 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~ 77 (558)
.++.+||++++| .|..|..++.|.+++... .+.++++++|+.|.... .++.....+...|..+|++.+-
T Consensus 69 ~aD~ii~~sP~y-~~~~p~~lK~~ld~l~~~-----~~~gK~~~~~~tgg~~~-~~~a~~~~l~~~l~~~g~~~v~ 137 (197)
T 2vzf_A 69 NADGLIVATPIY-KASYTGLLKAFLDILPQF-----ALAGKAALPLATGGSPA-HVLALDYGLRPVLHSMGVRHVV 137 (197)
T ss_dssp HCSEEEEEEECB-TTBCCHHHHHHHTTSCTT-----TTTTCEEEEEEEESSGG-GGGHHHHTHHHHHHTTTCSEEC
T ss_pred HCCEEEEEeCcc-CCCCCHHHHHHHHhcccc-----ccCCCEEEEEEECCCcc-hhhHHHHHHHHHHHHcCCEecc
Confidence 368999999999 588999999999998542 38899999999987643 3333324688999999998764
No 68
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=96.01 E-value=0.011 Score=54.86 Aligned_cols=75 Identities=7% Similarity=-0.138 Sum_probs=57.7
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeec
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 78 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~ 78 (558)
.++.|||.+++|. |.+|..++.|++++...- ....+.++++++|+.+...+.....+.+.+...|..+|+..+-.
T Consensus 70 ~aD~ii~gsP~y~-~~~~~~lk~~ld~~~~~~-~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~~ 144 (199)
T 2zki_A 70 WADGFAIGSPTRY-GNMAGGLKTFLDTTAILW-KDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVPI 144 (199)
T ss_dssp HCSEEEEEEECBT-TBCCHHHHHHHHTTHHHH-HTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECCC
T ss_pred hCCEEEEECCccc-cCccHHHHHHHHHhhhcc-cccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeCC
Confidence 3689999999995 899999999999885320 01238899999999877765333667788999999999876643
No 69
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=95.63 E-value=0.015 Score=60.85 Aligned_cols=84 Identities=11% Similarity=-0.116 Sum_probs=61.6
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
+++.+||.++||+ |++++.+..|+..|.... +.++..|+||.+- |- +.+.+.+.++|+++|.+-+-+ ..
T Consensus 319 ~~~~ivlGspT~~-~~~~p~~~~~l~~l~~~~-----~~~K~~~~FGSyG--Ws--g~a~~~~~~~l~~~~~~~v~~-~~ 387 (410)
T 4dik_A 319 DSEALIFGVSTYE-AEIHPLMRFTLLEIIDKA-----NYEKPVLVFGVHG--WA--PSAERTAGELLKETKFRILSF-TE 387 (410)
T ss_dssp TCSEEEEEECCTT-SSSCHHHHHHHHHHHHHC-----CCCCEEEEEEECC--CC--CTTSCCHHHHHTTSSCEEEEE-EE
T ss_pred hCCeEEEEeCCcC-CcCCHHHHHHHHHHHhcc-----cCCCEEEEEECCC--CC--cHHHHHHHHHHHHCCCEEECc-EE
Confidence 5788999999996 677778999999988765 6789999999632 21 467899999999999876544 33
Q ss_pred cCCCCCchhHHHHHH
Q 008647 82 GDDDQCIEDDFTAWR 96 (558)
Q Consensus 82 ~d~~~~~~~~~~~W~ 96 (558)
.-.....++.+++-.
T Consensus 388 ~~~~~~de~~lee~~ 402 (410)
T 4dik_A 388 IKGSNMDERKIEEAI 402 (410)
T ss_dssp ECSTTCCHHHHHHHH
T ss_pred EECCCCCHHHHHHHH
Confidence 332333455555543
No 70
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=95.55 E-value=0.017 Score=52.56 Aligned_cols=67 Identities=4% Similarity=-0.004 Sum_probs=54.0
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEee-cCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGl-Gds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
.++.+||++++| .|.+|..++.|.+|+.... +.++.+++||. |... .+..+...+...|..+|+..+
T Consensus 63 ~aD~ii~~tP~y-~~~~p~~lk~~lD~l~~~~-----~~gK~~~~~~~sgg~~--g~~~a~~~l~~~l~~~g~~~v 130 (174)
T 3gfs_A 63 KADAIVLLSPEY-HSGMSGALKNALDFLSSEQ-----FKYKPVALLAVAGGGD--GGINALNNMRTVMRGVYANVI 130 (174)
T ss_dssp HCSSEEEEEECS-SSSCCHHHHHHHHTCCHHH-----HTTCEEEEEEECCSTT--CSHHHHHHHHHHHHHTTCEEE
T ss_pred HCCEEEEEcCCc-CCCCCHHHHHHHHHhCHhh-----hCCCcEEEEEECCCCh--hHHHHHHHHHHHHHHcCCEEe
Confidence 367899999999 8999999999999986532 78899999984 4331 235677889999999999765
No 71
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=95.54 E-value=0.028 Score=52.02 Aligned_cols=102 Identities=8% Similarity=-0.076 Sum_probs=70.6
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCC--------CCCCCCCceEEEEeecCcCch--HHHHHHHHHHHHHHhC
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGND--------RGPWLQQLKFGVFGLGNRQYE--HFNKIGIVLDEELCKQ 71 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~--------~~~~l~~~~~avfGlGds~y~--~f~~~~~~l~~~l~~l 71 (558)
.++.+||++++| .|.+|.-.+.|.+++..... +...+.++++++|+.+...|. .|+.+...+...|..+
T Consensus 86 ~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~~~l~~~ 164 (201)
T 1t5b_A 86 AHDVIVIAAPMY-NFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKVFLGFI 164 (201)
T ss_dssp HCSEEEEECCCB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHHHHHHHT
T ss_pred hCCEEEEEeCcc-cCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHHHHHhhc
Confidence 368999999999 67899999999999974211 012478999999998777663 3666777788999999
Q ss_pred CCeEeecCcccCCCCCchhHHHHHHHHHHHHHHH
Q 008647 72 GGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 72 Ga~~i~~~~~~d~~~~~~~~~~~W~~~l~~~l~~ 105 (558)
|++.+-......... .+...++|+++..+.+.+
T Consensus 165 G~~~~~~~~~~~~~~-~~~~~~~~l~~a~~~~~~ 197 (201)
T 1t5b_A 165 GITDVNFVFAEGIAY-GPEVAAKAQADAKAAIDS 197 (201)
T ss_dssp TCCCEEEEEECCGGG-CHHHHHHHHHHHHHHHHH
T ss_pred CcceeEEEEEecccC-ChHHHHHHHHHHHHHHHH
Confidence 998663322221111 234457787766555543
No 72
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=95.51 E-value=0.028 Score=52.67 Aligned_cols=75 Identities=11% Similarity=-0.065 Sum_probs=58.8
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeec
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 78 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~ 78 (558)
.++.|||.+++| .|.+|..++.|++++...- ....+.++++++|+.+...+..+..+...+...|..+|...+..
T Consensus 78 ~aD~ii~gsP~y-~~~~~~~lk~~ld~~~~~~-~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~ 152 (211)
T 1ydg_A 78 WAEAIVFSSPTR-FGGATSQMRAFIDTLGGLW-SSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPP 152 (211)
T ss_dssp HCSEEEEEEEEE-TTEECHHHHHHHHTTHHHH-HTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECCC
T ss_pred HCCEEEEEcCcc-ccCccHHHHHHHHHhcccc-ccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeCC
Confidence 468999999999 5899999999999875320 01238899999999988766444677888999999999876643
No 73
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=94.63 E-value=0.055 Score=48.00 Aligned_cols=75 Identities=11% Similarity=0.109 Sum_probs=53.4
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.|+.|||.++||. |.+|..++.|++.+.. +.+..+++|+.|.+... .+.+.+.+.+. ||+ +.+-..
T Consensus 76 ~~d~iilG~P~~~-g~~~~~~~~fl~~~~~-------~~~k~~~~~t~gg~~~g---~~~~~l~~~~~--~~~-~~~g~~ 141 (151)
T 3edo_A 76 NYDLILIGSPVWS-GYPATPIKTLLDQMKN-------YRGEVASFFTSAGTNHK---AYVSHFNEWAD--GLN-VIGVAR 141 (151)
T ss_dssp GCSEEEEEEEEET-TEECTHHHHHHHHTTT-------CCSEEEEEEECSSCCHH---HHHHHHHHHTT--TSE-EEEEEE
T ss_pred hCCEEEEEcceec-ccccHHHHHHHHhchh-------cCCEEEEEEEeCCCCCC---cHHHHHHHHcC--CCe-eecccc
Confidence 5889999999995 9999999999988741 67889999999998762 23455666664 443 323222
Q ss_pred cCCCCCchhHHHHHH
Q 008647 82 GDDDQCIEDDFTAWR 96 (558)
Q Consensus 82 ~d~~~~~~~~~~~W~ 96 (558)
.+ .++..|+
T Consensus 142 ~~------~~~~~w~ 150 (151)
T 3edo_A 142 DD------SEVDKWS 150 (151)
T ss_dssp TT------TTHHHHH
T ss_pred cH------HHHHHHh
Confidence 22 3588886
No 74
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=94.12 E-value=0.12 Score=47.44 Aligned_cols=66 Identities=14% Similarity=-0.056 Sum_probs=54.1
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEee
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 77 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~ 77 (558)
.++.+||++++| .|.+|..++.|.+++.. .+.++++++|+.|...- ..+...+...|..+|++.+-
T Consensus 84 ~aD~iI~~sP~y-~~~~p~~lK~~iD~~~~------~l~gK~~~~~~~G~~~~---~~~~~~l~~~l~~~G~~~~~ 149 (191)
T 1t0i_A 84 ALDIIVFVTPQY-NWGYPAALKNAIDRLYH------EWHGKPALVVSYGGHGG---SKCNDQLQEVLHGLKMNVIG 149 (191)
T ss_dssp TCSEEEEEEECB-TTBCCHHHHHHHHTCST------TTTTCEEEEEEEETTTT---HHHHHHHHHHHHHTTCEEEE
T ss_pred hCCEEEEEeceE-CCCCCHHHHHHHHHHHh------hcCCCEEEEEEeCCcch---hhHHHHHHHHHHHCCCEEcc
Confidence 478999999999 58899999999998853 27899999999988542 34667889999999998664
No 75
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=93.74 E-value=0.12 Score=47.58 Aligned_cols=72 Identities=11% Similarity=0.065 Sum_probs=56.2
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEee
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 77 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~ 77 (558)
.++.+||++++| .|.+|..++.|.+++..... ..+.++++++|+.+...+. ...+...+...|..+|++.+-
T Consensus 72 ~aD~ii~~sP~y-~~~~p~~lK~~iD~~~~~~~--~~l~gK~~~~~~t~gg~~g-~~~~~~~l~~~l~~~g~~~~~ 143 (193)
T 1rtt_A 72 AADALLFATPEY-NYSMAGVLKNAIDWASRPPE--QPFSGKPAAILGASAGRFG-TARAQYHLRQTLVFLDVHPLN 143 (193)
T ss_dssp HCSEEEEECCEE-TTEECHHHHHHHHHHTCSSS--CTTTTCEEEEEEECSSTTT-THHHHHHHHHHHHHHTCEECC
T ss_pred hCCEEEEEcccc-ccCcCHHHHHHHHHhccccC--cccCCCeEEEEEeCCCCCc-cHHHHHHHHHHHHHcCCEEcC
Confidence 368899999999 67799999999999976421 2488999999999754442 235668888999999997665
No 76
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=93.59 E-value=0.18 Score=46.73 Aligned_cols=67 Identities=10% Similarity=0.004 Sum_probs=52.3
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
.+.+||++++| .|.+|.-++.|.+|+... .+.++..++++.|... ......-..+...|..+|+..+
T Consensus 86 AD~ivi~sP~Y-~~~~~~~lK~~iD~~~~~-----~l~gK~~~~v~t~G~~-~~~~~~~~~L~~il~~lg~~vv 152 (191)
T 3k1y_A 86 SDGLVVATPVF-KASYTGLFKMFFDILDTD-----ALTGMPTIIAATAGSA-RHSLVLDYALRPLLSYMRAVVV 152 (191)
T ss_dssp CSEEEEEEECB-TTBSCHHHHHHHHHSCTT-----TTTTCEEEEEEEESSS-TTTTHHHHTHHHHHHHTTCEEC
T ss_pred CCEEEEEcCcc-CCcCcHHHHHHHHHhhhh-----hcCCCEEEEEEeCCCc-chhhHHHHHHHHHHHHCCCEEc
Confidence 57899999999 899999999999999652 3899999999988543 2222222338888999999765
No 77
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=93.01 E-value=0.2 Score=47.99 Aligned_cols=100 Identities=10% Similarity=0.027 Sum_probs=68.1
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcc
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 81 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~ 81 (558)
.++.|||.+++| .|.+|..++.|.+++.... ....+.+++.++|+.+...- ...+...+...|..+|+..+-....
T Consensus 79 ~AD~iI~~sP~y-~~~~p~~lK~~iDr~~~~~-~~~~l~gK~~~~i~t~g~~g--~~~~~~~l~~~l~~~G~~~v~~~~~ 154 (242)
T 1sqs_A 79 ESDIIIISSPVY-LQNVSVDTKNFIERIGGWS-HLFRLAGKFVVTLDVAESNG--SDNVSEYLRDIFSYMGGQILHQVSI 154 (242)
T ss_dssp HCSEEEEEEEEC-SSSCCHHHHHHHHHTGGGT-TTTTTTTCEEEEEEEESSCC--SCCHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HCCEEEEEcccc-ccCCCHHHHHHHHHHHHhc-cccccCCCEEEEEEeCCCCc--hhhHHHHHHHHHHHCCCeeeeEEEE
Confidence 367899999999 7889999999999985421 12348899999987653321 2245667888999999987654433
Q ss_pred cCC-CCCchhHHHHHHHHHHHHHHH
Q 008647 82 GDD-DQCIEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 82 ~d~-~~~~~~~~~~W~~~l~~~l~~ 105 (558)
.+. .......++.+.+++...+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~la~~i~~ 179 (242)
T 1sqs_A 155 TNSLKDIAEAQLMEATYKIEDVLEG 179 (242)
T ss_dssp EGGGGGGHHHHHHHHHHHHHHHHTT
T ss_pred eccCChHHHHHHHHHHHHHHHHHhc
Confidence 222 113456666777766666543
No 78
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=91.64 E-value=0.61 Score=43.30 Aligned_cols=70 Identities=10% Similarity=0.003 Sum_probs=55.7
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
.+.+||++++| .|..|.-.+.|.+|+.... ...|.++.+++++.+-..+-.. .+...|...|..+|+..+
T Consensus 74 AD~iVi~tP~Y-~~s~p~~LK~~iD~~~~~~--~~~l~gK~v~~v~tsgg~~g~~-~a~~~Lr~il~~lg~~~v 143 (199)
T 4hs4_A 74 ADAVVIVTPEY-NYSVPGVLKNAIDWLSRVS--PQPLAGKPVALVTASPGMIGGA-RAQNHLRQSLVFLDAYVL 143 (199)
T ss_dssp SSEEEEEECCB-TTBCCHHHHHHHHHHTTSS--SCTTTTCEEEEEEECSSSSCSH-HHHHHHHHHHHHTTCEEC
T ss_pred CCEEEEEcCcc-CCCcCHHHHHHHHHhcccC--CcccCCCEEEEEEeCCCCcccH-HHHHHHHHHHHHcCCEEc
Confidence 67899999999 7889999999999997721 2458999999999965545222 245678899999999766
No 79
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=91.02 E-value=0.91 Score=42.02 Aligned_cols=101 Identities=9% Similarity=-0.059 Sum_probs=64.9
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCC--------CCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCC
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGND--------RGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGG 73 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~--------~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa 73 (558)
.++.+||++++| .|.+|.-++.|.+++..... +...|.+++++++......|..=..+...+...|.-+|.
T Consensus 94 ~aD~iv~~~P~y-~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~l~~~~~~~G~ 172 (208)
T 2hpv_A 94 SADKVVIANPMW-NLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDFASQYIKAILNFIGV 172 (208)
T ss_dssp HCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSCSHHHHHHHHHHHHTTC
T ss_pred hCCEEEEEeccc-cCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCcchHHHHHHHHHHhCCC
Confidence 367899999999 78899999999999865211 113478999999865444452102344567778888999
Q ss_pred eEeecCcccCCCCCchhHHHHHHHHHHHHHH
Q 008647 74 ARLVPLGLGDDDQCIEDDFTAWRELVWPELD 104 (558)
Q Consensus 74 ~~i~~~~~~d~~~~~~~~~~~W~~~l~~~l~ 104 (558)
+.+-......... .+...++|+++..+...
T Consensus 173 ~~~~~~~~~~~~~-~~~~~~~~l~~a~~~~~ 202 (208)
T 2hpv_A 173 DQVDGLFIEGIDH-FPDRAEELLNTAMTKAT 202 (208)
T ss_dssp CEEEEEEEECTTT-CGGGHHHHHHHHHHHHH
T ss_pred CeeeEEEEccccC-CHHHHHHHHHHHHHHHH
Confidence 8664433222222 23556677765544443
No 80
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=90.74 E-value=0.56 Score=43.33 Aligned_cols=104 Identities=10% Similarity=-0.087 Sum_probs=72.2
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCC--------CCCCCCCceEEEEeecCcC--chHH--HHHHHHHHHHHHh
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGND--------RGPWLQQLKFGVFGLGNRQ--YEHF--NKIGIVLDEELCK 70 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~--------~~~~l~~~~~avfGlGds~--y~~f--~~~~~~l~~~l~~ 70 (558)
.+.+||+++.| .+.+|.-.+.|.+++..... +...|.|+++.|+..+... |..+ ......+...|.-
T Consensus 74 AD~iV~~~P~y-~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~y~~~~~~~~~~~l~~~l~~ 152 (196)
T 3lcm_A 74 ADHLIFIFPIW-WSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNTPSFAMPFVQDYGKVLKKQILKP 152 (196)
T ss_dssp CSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSSCGGGTTTSSCTTHHHHHHTTGG
T ss_pred CCEEEEECchh-hccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCCchhhHhhhccCHHHHHHHHHHh
Confidence 68999999999 78999999999999954211 1135899999998877665 5211 1112456667777
Q ss_pred CCCeEeecCcccCCCCCchhHHHHHHHHHHHHHHHhh
Q 008647 71 QGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLL 107 (558)
Q Consensus 71 lGa~~i~~~~~~d~~~~~~~~~~~W~~~l~~~l~~~~ 107 (558)
+|.+.+-...........++...+|++++.+...+.+
T Consensus 153 ~G~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~ 189 (196)
T 3lcm_A 153 CAISPVKLTELTSIEKISDDERQKLLHKVAQITRNIL 189 (196)
T ss_dssp GTCCCEEEEEECSTTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred cCCceeeEEEEeCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8998765544444433467788899988777666544
No 81
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=90.66 E-value=1.3 Score=40.59 Aligned_cols=73 Identities=11% Similarity=-0.024 Sum_probs=55.3
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCC-----CCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGND-----RGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~-----~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
.++.+||++++| .|..|.-.+.|.+++..... ....|.++++++++.+... .+..+...+...|..+|++.+
T Consensus 67 ~AD~iV~~sP~y-~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~--g~~~~~~~l~~~l~~~G~~~v 143 (192)
T 3fvw_A 67 EADAIWIFSPVY-NYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGA--SPEEVFEDYRSLLPFIRMHLV 143 (192)
T ss_dssp HCSEEEEECCCB-TTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHTTCEEC
T ss_pred hCCEEEEECccc-ccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCc--chhHHHHHHHHHHHHcCCeee
Confidence 367899999999 78899999999999976321 0135899999999887663 233445778889999999866
Q ss_pred e
Q 008647 77 V 77 (558)
Q Consensus 77 ~ 77 (558)
-
T Consensus 144 ~ 144 (192)
T 3fvw_A 144 D 144 (192)
T ss_dssp C
T ss_pred c
Confidence 3
No 82
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=90.17 E-value=0.89 Score=40.99 Aligned_cols=75 Identities=9% Similarity=-0.088 Sum_probs=55.4
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCC------CCCCCceEEEEeecCcCch-HHHHHHHHHHHHHHhCCCe
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRG------PWLQQLKFGVFGLGNRQYE-HFNKIGIVLDEELCKQGGA 74 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~------~~l~~~~~avfGlGds~y~-~f~~~~~~l~~~l~~lGa~ 74 (558)
.++.|||++++| .|.+|.-++.|.+++....... ..+.+++.++|+.+..... .+..+...+...|..+|.+
T Consensus 71 ~aD~ii~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~~~G~~ 149 (184)
T 1rli_A 71 QCHILIFATPIY-WFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFMGMS 149 (184)
T ss_dssp TCSEEEEEEECB-TTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHHTCE
T ss_pred hCCEEEEEeCcc-ccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHHHcCCc
Confidence 578999999999 7889999999999885421110 1267899999988665321 2344667888899999998
Q ss_pred Eee
Q 008647 75 RLV 77 (558)
Q Consensus 75 ~i~ 77 (558)
.+-
T Consensus 150 ~~~ 152 (184)
T 1rli_A 150 FKG 152 (184)
T ss_dssp EEE
T ss_pred cce
Confidence 663
No 83
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=89.89 E-value=1.5 Score=42.12 Aligned_cols=71 Identities=8% Similarity=-0.075 Sum_probs=54.1
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
.+.+||++++| .|.+|.-.+.|.+|+.........+.++..++++.+-..-. . .+...+...|..+|+..+
T Consensus 99 AD~iI~~sP~Y-n~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~gg-~-~a~~~Lr~~l~~lg~~~v 169 (247)
T 2q62_A 99 SEGQVWVSPER-HGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGSQS-F-NAVNQMRILGRWMRMITI 169 (247)
T ss_dssp CSEEEEEEECS-SSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSSCC-C-HHHHHHHHHHHHTTCEEC
T ss_pred CCEEEEEeCCC-CCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCccH-H-HHHHHHHHHHHHCCCEEe
Confidence 57899999999 79999999999999965322123489999999998533221 1 355788889999999765
No 84
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=89.50 E-value=1.5 Score=40.41 Aligned_cols=70 Identities=9% Similarity=-0.054 Sum_probs=53.8
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
.+.+||++++| .|..|.-.+.|.+|+.... ...+.++..++++..-..+-.. .+...|...|..+|+.-+
T Consensus 73 AD~iv~~sP~y-~~~~~~~lK~~iD~~~~~~--~~~~~gK~~~~~~~s~g~~gg~-~a~~~Lr~~l~~lg~~v~ 142 (193)
T 3svl_A 73 ADGVVIVTPEY-NYSVPGGLKNAIDWLSRLP--DQPLAGKPVLIQTSSMGVIGGA-RCQYHLRQILVFLDAMVM 142 (193)
T ss_dssp SSEEEEEECCB-TTBCCHHHHHHHHHHHTST--TCTTTTCEEEEEEECSSTTTTH-HHHHHHHHHHHHTTCEEC
T ss_pred CCEEEEEeccc-CCCCCHHHHHHHHHHhhcC--ccccCCCeEEEEEeCCCCcchH-HHHHHHHHHHHHCCCEEc
Confidence 57899999999 8999999999999998732 2358999999999632222111 345778889999999755
No 85
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=89.19 E-value=4.9 Score=36.83 Aligned_cols=72 Identities=14% Similarity=0.076 Sum_probs=54.7
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
..+.+||+++.| +|..|.-.+.|.+||.+.. ....+.++.++++|.+-..+-.. .+...|...|..+|+..+
T Consensus 67 ~aD~~ii~tPeY-n~s~pg~LKn~iDwlsr~~-~~~~~~gKpv~~v~~S~G~~Gg~-~a~~~Lr~vl~~lg~~v~ 138 (190)
T 3u7r_A 67 HSDAVLAITPEY-NRSYPGMIKNAIDWATRPY-GQNSWKGKPAAVIGTSPGVIGAA-LAQARLKNDLLHVGTVMM 138 (190)
T ss_dssp TSSEEEEECCCB-TTBCCHHHHHHHHHHHCST-TCCTTTTCEEEEEEEESSTTTTH-HHHHHHHHHHHTTTCEEC
T ss_pred hCCcEEEechhh-cccCCHHHHHHHHHhcccc-cCCccCCCEEEEEEeCCchhhHH-HHHHHHHHHHHHcCCEEc
Confidence 467899999999 7999999999999996532 12459999999998755544222 234567788899999655
No 86
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=88.08 E-value=2.7 Score=38.16 Aligned_cols=103 Identities=7% Similarity=-0.118 Sum_probs=70.2
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCC---CCCCCCCCceEEEEeecCcC---ch-------HHHHHHHHHHHHH
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGN---DRGPWLQQLKFGVFGLGNRQ---YE-------HFNKIGIVLDEEL 68 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~---~~~~~l~~~~~avfGlGds~---y~-------~f~~~~~~l~~~l 68 (558)
..+.+||.++.| .+.+|.-.+.|.+.+.... .....|.|+++.++...... |. .+...-+-+...+
T Consensus 51 ~aD~iV~~~P~y-~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g~~~~~y~~~g~~g~~~~~~l~p~~~~~ 129 (177)
T 3ha2_A 51 QNDRIILEFPLY-WYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVSTGDNGNAFQAGAAEKFTISELMRPFEAFA 129 (177)
T ss_dssp TCSEEEEEEECB-TTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEESSCGGGSSTTSTTCSCHHHHTHHHHHHH
T ss_pred hCCEEEEECChh-hccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeCCCChHHhcccCcccCCHHHHHHHHHHHH
Confidence 468999999999 7889999999999875420 01235899999988665543 31 2334444556677
Q ss_pred HhCCCeEeecCcccCCCCCchhHHHHHHHHHHHHHHH
Q 008647 69 CKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 69 ~~lGa~~i~~~~~~d~~~~~~~~~~~W~~~l~~~l~~ 105 (558)
.-+|.+-+-+..........+.+.++|+++..+.|..
T Consensus 130 ~~~G~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~l~~ 166 (177)
T 3ha2_A 130 NKTKMMYLPILAVHQFLYLEPDAQQRLLVAYQQYATN 166 (177)
T ss_dssp HHTTCEECCCEEEESGGGSCHHHHHHHHHHHHHHHHC
T ss_pred HhCCCeEeCeEEEeCCCCCCHHHHHHHHHHHHHHHcc
Confidence 7889977644443332334577889999887776664
No 87
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=87.53 E-value=2.1 Score=42.00 Aligned_cols=71 Identities=8% Similarity=-0.165 Sum_probs=54.0
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
.+.+||++++| .|..|.-++.|.+|+.........+.++..++++.+-..- .+ .+...+...|..+|+..+
T Consensus 124 ADgiV~aSP~Y-n~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~tsG~~g-g~-~a~~~Lr~~l~~lg~~vv 194 (279)
T 2fzv_A 124 SEGQVWCSPER-HGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGSQ-SF-NAVNTLRLLGRWMRMFTI 194 (279)
T ss_dssp CSEEEEEEEEE-TTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSSSC-CC-HHHHHHHHHHHHTTCEEC
T ss_pred CCeEEEEcCcc-ccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEECCCcc-HH-HHHHHHHHHHHhcCcEEe
Confidence 57899999999 8999999999999996532222348999999999853322 22 345678888999998765
No 88
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=87.48 E-value=1.8 Score=40.19 Aligned_cols=101 Identities=11% Similarity=0.008 Sum_probs=66.5
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCC---------CC---CCCCCCceEEEEee-cC-cCch-----HHHHHHHH
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGN---------DR---GPWLQQLKFGVFGL-GN-RQYE-----HFNKIGIV 63 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~---------~~---~~~l~~~~~avfGl-Gd-s~y~-----~f~~~~~~ 63 (558)
.+.+||+++.| .+.+|.-.+.|.+++.... .+ ...|.++++.++.. |. ..|. .+...-..
T Consensus 88 AD~iV~~~P~y-~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~~~~~~~~ 166 (212)
T 3r6w_A 88 SDLLVISTPMY-NFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGENQAMNHADPW 166 (212)
T ss_dssp CSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECSSSCCSTTCTTGGGCCSHHH
T ss_pred CCEEEEEcCcc-cccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecCCCCcCCCCCCCchhhhHHH
Confidence 67899999999 7889999999999995421 11 23588998888866 42 2332 23344566
Q ss_pred HHHHHHhCCCeEeecCcccCCCCCchhHHHHHHHHHHHHHHH
Q 008647 64 LDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 64 l~~~l~~lGa~~i~~~~~~d~~~~~~~~~~~W~~~l~~~l~~ 105 (558)
+...|.-+|.+.+-.. ........++..+.|+++..+.+.+
T Consensus 167 l~~~l~~~G~~~~~~v-~~~g~~~~~~~~~~~l~~a~~~~~~ 207 (212)
T 3r6w_A 167 LRTALGFIGIDEVTVV-AAEGEESGGRSFEDSCDEAEQRLLA 207 (212)
T ss_dssp HHHHHHHHTCCEEEEE-EECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCceeEEE-EEecccCCHHHHHHHHHHHHHHHHH
Confidence 7788888999877333 3332223456677777665555443
No 89
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=86.48 E-value=0.13 Score=47.86 Aligned_cols=72 Identities=10% Similarity=-0.008 Sum_probs=55.1
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEee
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 77 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~ 77 (558)
..+.+||++++| .|..|.-.+.|.+|+..... ..+.++.+++++.+...+. ...+...+...|..+|+..+-
T Consensus 73 ~AD~iIi~tP~Y-~~s~p~~lK~~iD~l~~~~~--~~l~gK~v~~v~tsgg~~g-~~~a~~~Lr~~l~~lg~~~v~ 144 (199)
T 3s2y_A 73 TADAVVIVTPEY-NYSVPGVLKNAIDWLSRVSP--QPLAGKPVALVTASPGMIG-GARAQYHLRQSLVFLDAYVLN 144 (199)
Confidence 467899999999 67899999999999976421 1488999999997544332 344667888888889987663
No 90
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=86.15 E-value=5 Score=37.71 Aligned_cols=103 Identities=10% Similarity=-0.055 Sum_probs=69.5
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcC--C-----------------CCCCCCCCceEEEEeecCcCchHH-----
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEG--N-----------------DRGPWLQQLKFGVFGLGNRQYEHF----- 57 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~--~-----------------~~~~~l~~~~~avfGlGds~y~~f----- 57 (558)
..+.|||.++.| .+..|.-.+.|++.+... . .+...|.|+++.|+-.-......|
T Consensus 83 ~aD~iv~~~P~y-~~~~p~~lK~~iD~v~~~g~af~y~~~g~~~~~p~~~yG~~glL~gKk~~li~T~G~p~~~y~~~g~ 161 (218)
T 3rpe_A 83 WADTIIYQMPAW-WMGEPWILKKYIDEVFTDGHGRLYQSDGRTRSDATKGYGSGGLIQGKTYMLSVTWNAPREAFTDPEQ 161 (218)
T ss_dssp HCSEEEEEEECB-TTBCCHHHHHHHHHHHHHTBTTTBCCCSCCSTTTTSCTTCCBSCTTCEEEEEEECSSCTHHHHCTTS
T ss_pred hCCEEEEECChH-hccCCHHHHHHHHHHHhcCcceeeccccccccccccccCCccCCCCCEEEEEEcCCCChHhhccccc
Confidence 367899999999 889999999999988542 1 112357899988876655543222
Q ss_pred --HH-----HHHHHHHHHHhCCCeEeecCcccCCCCCchhHHHHHHHHHHHHHHHhh
Q 008647 58 --NK-----IGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLL 107 (558)
Q Consensus 58 --~~-----~~~~l~~~l~~lGa~~i~~~~~~d~~~~~~~~~~~W~~~l~~~l~~~~ 107 (558)
+. .-.-+...|.-+|.+.+-+....+... +.++++|++++.+.|.+.+
T Consensus 162 ~~~g~~~~~~l~p~~~~l~f~G~~~l~~~~~~g~~~--~~~~~~~~~~~~~~L~~~~ 216 (218)
T 3rpe_A 162 FFHGVGVDGVYLPFHKANQFLGMKPLPTFMCNDVIK--QPDIEGDIARYRQHLAENV 216 (218)
T ss_dssp TTTTCHHHHHTHHHHHHHHHTTCEECCCEEECSTTT--SCCHHHHHHHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHHHHhCCCEEeceEEEeCCCC--hHHHHHHHHHHHHHHHHhc
Confidence 22 222246777789998775544444332 4578888888877777655
No 91
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=84.30 E-value=4.6 Score=37.31 Aligned_cols=75 Identities=11% Similarity=-0.008 Sum_probs=52.1
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCC-------------------CCCCCCCCceEEEEeecCcCchHH------
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGN-------------------DRGPWLQQLKFGVFGLGNRQYEHF------ 57 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~-------------------~~~~~l~~~~~avfGlGds~y~~f------ 57 (558)
.+.|||.++.| .+.+|.-.+.|.+.+.... .+...|.+++++++.........|
T Consensus 71 AD~iV~~~P~y-~~s~pa~LK~~iDrv~~~g~~~~y~~~~~~~~~~~~~~g~~~~l~gK~~~~i~t~g~~~~~y~~~g~~ 149 (204)
T 2amj_A 71 ADVVIWQMPGW-WMGAPWTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQF 149 (204)
T ss_dssp CSEEEEEEECB-TTBCCHHHHHHHHHHHHHTBTTTBSSSCC-------CTTCCBSCTTCEEEEEEECSSCTHHHHCTTSS
T ss_pred CCEEEEECCcc-ccCCCHHHHHHHHHHhhcCcceeeccCcccccccccccCcccccCCCeEEEEEeCCCChHHHccCccc
Confidence 68999999999 7889999999999763210 112358899999988765533222
Q ss_pred ------HHHHHHHHHHHHhCCCeEeec
Q 008647 58 ------NKIGIVLDEELCKQGGARLVP 78 (558)
Q Consensus 58 ------~~~~~~l~~~l~~lGa~~i~~ 78 (558)
..+...+...|.-+|++.+-.
T Consensus 150 ~~~~~~~~~l~~l~~~l~~~G~~~~~~ 176 (204)
T 2amj_A 150 FHGVGVDGVYLPFHKANQFLGMEPLPT 176 (204)
T ss_dssp SCSCCHHHHTHHHHHHHHHTTCEECCC
T ss_pred ccCCCHHHHHHHHHHHHHHcCCeecce
Confidence 123334677888899986633
No 92
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=84.26 E-value=7.7 Score=35.54 Aligned_cols=104 Identities=11% Similarity=-0.065 Sum_probs=65.4
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCC----CCCCCCCceEEEEeecCcC---ch-------HHHHHHHHHHHH
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGND----RGPWLQQLKFGVFGLGNRQ---YE-------HFNKIGIVLDEE 67 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~----~~~~l~~~~~avfGlGds~---y~-------~f~~~~~~l~~~ 67 (558)
..+.|||.++.| .+.+|.-.+.|.+++..... ....|.|+++.++...... |. .+...-.-+...
T Consensus 58 ~AD~iv~~~P~y-~~~~pa~lK~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~~~~~y~~~g~~~~~~~~~l~pl~~~ 136 (192)
T 3f2v_A 58 THDSLVWQFPIY-WFNCPPLLKQWLDEVLTYGWAYGSKGKALKGRKIALAVSLGAPAADYRADGAVGCSVAEVLRPFELT 136 (192)
T ss_dssp TSSSEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEESSCGGGSSTTSSSCSCHHHHHHHHHHH
T ss_pred hCCEEEEEcChh-hcCCCHHHHHHHHHHhhcCccccCCCCCCCCCEEEEEEeCCCChHhhccCCccccCHHHHHHHHHHH
Confidence 467899999999 78899999999999865321 1246899999988765554 41 233444446678
Q ss_pred HHhCCCeEeecCcccCCCCC------chhHHHHHHHHHHHHHHHh
Q 008647 68 LCKQGGARLVPLGLGDDDQC------IEDDFTAWRELVWPELDQL 106 (558)
Q Consensus 68 l~~lGa~~i~~~~~~d~~~~------~~~~~~~W~~~l~~~l~~~ 106 (558)
+.-+|.+.+-+....+.... .+.+++...++..+.|.+.
T Consensus 137 ~~f~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~y~~~l~~~ 181 (192)
T 3f2v_A 137 AKYCNADYRPPFTFHTIDSNAGYSEAARQEVERSARDYLAWLDAL 181 (192)
T ss_dssp HHHTTCEECCCEEEEC-------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCeEeeeEEEeccccccccccCCHHHHHHHHHHHHHHHHHH
Confidence 88899986644333332211 2345555555544545543
No 93
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=83.42 E-value=2.8 Score=39.05 Aligned_cols=101 Identities=5% Similarity=-0.029 Sum_probs=66.7
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCC--------CCCCCCCceEEEEeecCcCch-----HHHHHHHHHHHHHH
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGND--------RGPWLQQLKFGVFGLGNRQYE-----HFNKIGIVLDEELC 69 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~--------~~~~l~~~~~avfGlGds~y~-----~f~~~~~~l~~~l~ 69 (558)
.+.+||+++.| .+..|.-.+.|.+++..... +...|.++++.++..-...|. .|...-..+...|.
T Consensus 93 aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~g~~~~~~~~~~~~~~~~~l~~~l~ 171 (211)
T 3p0r_A 93 ADKVVFGFPLW-NLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGVYSEGPAAEVEMAVKYVASMMG 171 (211)
T ss_dssp CSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEESSCCSSSTTGGGCBSHHHHHHHHH
T ss_pred CCEEEEEcChh-cccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeCCCCCCCCCccchhHHHHHHHHHHH
Confidence 57899999999 78899999999999964321 123588999988875434452 13334566778888
Q ss_pred hCCCeEeecCcccCCCCCchhHHHHHHHHHHHHHHH
Q 008647 70 KQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 105 (558)
Q Consensus 70 ~lGa~~i~~~~~~d~~~~~~~~~~~W~~~l~~~l~~ 105 (558)
-+|.+.+-....... ....+.-++|+++..+.+.+
T Consensus 172 ~~G~~~v~~i~~~g~-~~~~~~~~~~l~~a~~~~~~ 206 (211)
T 3p0r_A 172 FFGATNMETVVIEGH-NQFPDKAEEIITAGLEEAAK 206 (211)
T ss_dssp HTTCCSCEEEEEECT-TTSGGGHHHHHHHHHHHHHH
T ss_pred hCCCCeeeEEEEecc-ccCchHHHHHHHHHHHHHHH
Confidence 899986533322222 22234667887766555544
No 94
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=83.10 E-value=3.4 Score=39.01 Aligned_cols=106 Identities=11% Similarity=-0.117 Sum_probs=69.0
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCCC--------CCCCCCCceEEEEeecCc---Cch--HHHHHHHH----H
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGND--------RGPWLQQLKFGVFGLGNR---QYE--HFNKIGIV----L 64 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~--------~~~~l~~~~~avfGlGds---~y~--~f~~~~~~----l 64 (558)
.++.|||+++.| .|.+|.-.+.|.+++..... ....|.|+++.++..... .|. .++...+. +
T Consensus 92 ~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~~~~~y~~~g~~~~~~~~l~p~ 170 (228)
T 3tem_A 92 EADLVIFQFPLY-WFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPL 170 (228)
T ss_dssp HCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSCTTTTSTTSTTCCHHHHHHHH
T ss_pred hCCEEEEECChh-hcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCCCHHHHhhccccCCHHHHHHHH
Confidence 367899999999 78999999999999864311 124589999988855443 342 12222222 2
Q ss_pred H-HHHHhCCCeEeecCcccCCCCCchhHHHHHHHHHHHHHHHhhc
Q 008647 65 D-EELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLR 108 (558)
Q Consensus 65 ~-~~l~~lGa~~i~~~~~~d~~~~~~~~~~~W~~~l~~~l~~~~~ 108 (558)
. ..+.-+|.+.+-+....+.....++...+|++++.+.|.....
T Consensus 171 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 215 (228)
T 3tem_A 171 QHGTLHFCGFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWK 215 (228)
T ss_dssp HCCCCCTTTCEECCCEEECCTTTSCHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHhCCceEcCeEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 1 1334478776644444444444677888999888887776554
No 95
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=80.47 E-value=6.9 Score=36.75 Aligned_cols=104 Identities=8% Similarity=-0.070 Sum_probs=69.5
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCC--------CCCCC-CCceEEEEeecCcCc------hHHHHHHHHHHHH
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGND--------RGPWL-QQLKFGVFGLGNRQY------EHFNKIGIVLDEE 67 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~--------~~~~l-~~~~~avfGlGds~y------~~f~~~~~~l~~~ 67 (558)
.+.+||+++.| .+..|.-.+.|.+++..... +...+ .+++..|+..-...| ..+......+...
T Consensus 95 aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg~~~~~~~~~~~~~~~~~l~~~ 173 (223)
T 3u7i_A 95 ANTYVIVLPLH-NFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGGIYTNDDWYTDVEYSHKYLKAM 173 (223)
T ss_dssp CSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSSCCSSSSHHHHTCHHHHHHHHH
T ss_pred CCEEEEEcChh-hccCCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCCCCCCCCccchHHHHHHHHHHH
Confidence 57899999999 78899999999999965321 11235 788888886644434 2234455677888
Q ss_pred HHhCCCeEeecCcccCCCC-CchhHHHHHHHHHHHHHHHhh
Q 008647 68 LCKQGGARLVPLGLGDDDQ-CIEDDFTAWRELVWPELDQLL 107 (558)
Q Consensus 68 l~~lGa~~i~~~~~~d~~~-~~~~~~~~W~~~l~~~l~~~~ 107 (558)
|.-+|.+.+-......... +.++.++++.+++.....+..
T Consensus 174 l~~~G~~~~~~i~~~g~~~~~~~~~~~~a~~~~~~~~~~f~ 214 (223)
T 3u7i_A 174 FNFLGIEDYQIVRAQGTAVLDPTEVLQNAYKEVEEAASRLA 214 (223)
T ss_dssp HHHHTCCEEEEEEECCTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCceeEEEEEcCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8889998764332222222 467777788777665555443
No 96
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=79.42 E-value=7.2 Score=37.80 Aligned_cols=104 Identities=12% Similarity=-0.133 Sum_probs=64.3
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCC--------CCCCCCCceEEEEeecCcC---ch------HHHHHHHHHH
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGND--------RGPWLQQLKFGVFGLGNRQ---YE------HFNKIGIVLD 65 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~--------~~~~l~~~~~avfGlGds~---y~------~f~~~~~~l~ 65 (558)
++.|||.++.| .+.+|.-.+.|.+++..... +...|.++++.++...... |. .+......+.
T Consensus 94 AD~IV~~~P~y-~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg~~~~y~~~g~~~~~~~~~~~~~ 172 (273)
T 1d4a_A 94 ADLVIFQFPLQ-WFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQ 172 (273)
T ss_dssp CSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSSCTGGGSTTBTTCCHHHHHHHHH
T ss_pred CCEEEEECchh-hccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCCChHHhcccccCCCHHHHHHHHH
Confidence 67899999999 78899999999999865321 1235889998888764443 42 1112222222
Q ss_pred -HHHHhCCCeEeecCcccCCCCCchhHHHHHHHHHHHHHHHhh
Q 008647 66 -EELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLL 107 (558)
Q Consensus 66 -~~l~~lGa~~i~~~~~~d~~~~~~~~~~~W~~~l~~~l~~~~ 107 (558)
..|.-+|.+.+-+..........+...+.|+++..+.+.+..
T Consensus 173 ~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~ 215 (273)
T 1d4a_A 173 SGILHFCGFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIW 215 (273)
T ss_dssp TTTTGGGTCEECCCEEETTGGGSCHHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHhCCCeeeeEEEEeccccCCHHHHHHHHHHHHHHHHHHH
Confidence 355678987664333332222234566677776666666554
No 97
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=70.95 E-value=22 Score=36.60 Aligned_cols=104 Identities=10% Similarity=-0.030 Sum_probs=63.9
Q ss_pred CCcEEEEEeccCCCCCCCccHHHHHHHHhcCC----CCCCCCCCceEEEEee-cCc--Cc-----hHHHHHHHHHHHHHH
Q 008647 2 LHSIYLRLTCRYGDGEPTDNAARFYKWFTEGN----DRGPWLQQLKFGVFGL-GNR--QY-----EHFNKIGIVLDEELC 69 (558)
Q Consensus 2 ~~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~----~~~~~l~~~~~avfGl-Gds--~y-----~~f~~~~~~l~~~l~ 69 (558)
.++.|||.++.| .+..|.-.+.|++++.... .....|.|+++.++.. |.. .| ..|...-.-+...+.
T Consensus 292 ~aD~iv~~~P~y-w~~~Pa~lK~~iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g~~~~~y~~~~~~~~~~~l~~l~~~~~ 370 (413)
T 3l9w_A 292 RADLIVWQHPMQ-WYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAI 370 (413)
T ss_dssp TCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBSTTCCTTTTCEEEEEEECSSCGGGGCCSSSCSGGGGGHHHHHHHH
T ss_pred hCCEEEEECchh-hccCCHHHHHHHHHHHhcCceecCCCCccccceEEEEEeCCCChHhhCCCCccCchHHHHHHHHHHH
Confidence 468999999999 7889999999999986432 1123589999887754 332 22 112223355666777
Q ss_pred hCCCeEeecCcccCCCCCchhHHHHHHHHHHHHHHHh
Q 008647 70 KQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQL 106 (558)
Q Consensus 70 ~lGa~~i~~~~~~d~~~~~~~~~~~W~~~l~~~l~~~ 106 (558)
-+|.+-+-+........-.+.....++++....|...
T Consensus 371 ~~G~~~l~~~~~~g~~~~~d~~~~~~~~~~~~~L~~~ 407 (413)
T 3l9w_A 371 YCGLNWLPPFAMHCTFICDDETLEGQARHYKQRLLEW 407 (413)
T ss_dssp HTTCEECCCEEECCSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCCeecceEEEcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8899765333332222223445555555555555543
No 98
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=55.01 E-value=15 Score=32.94 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=43.1
Q ss_pred CCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcccCCCCCchhHHHHH
Q 008647 38 WLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 95 (558)
Q Consensus 38 ~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~~d~~~~~~~~~~~W 95 (558)
+...++++|+-.||..-..++..+..+.++|.++|++...-....|+.......+..|
T Consensus 7 ~~~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a 64 (172)
T 1mkz_A 7 EFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAW 64 (172)
T ss_dssp SCCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHH
T ss_pred CCCCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHH
Confidence 3677899999999997778888889999999999997655444455543344455444
No 99
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=40.68 E-value=11 Score=33.47 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=39.4
Q ss_pred CCCceEEEEeecCcCc--hHHHHHHHHHHHHHHhCCCeEeecCcccCCCCCchhHHHHHH
Q 008647 39 LQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWR 96 (558)
Q Consensus 39 l~~~~~avfGlGds~y--~~f~~~~~~l~~~l~~lGa~~i~~~~~~d~~~~~~~~~~~W~ 96 (558)
....+++|+-.||.-+ .-++..+..+.++|++.|++.+.-....|+ ......+.+|+
T Consensus 5 ~~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~ 63 (164)
T 3pzy_A 5 MTTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAI 63 (164)
T ss_dssp --CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHH
Confidence 4567999999999977 567888888999999999976544444555 54555565554
No 100
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=40.49 E-value=48 Score=31.69 Aligned_cols=41 Identities=5% Similarity=0.178 Sum_probs=33.8
Q ss_pred eeEEEEeeeecCCCCCCCcEEEEEEEecC-CCccccCCCeEEEeecC
Q 008647 159 CRVNVAVRRELHKPDSDRSCIHLEFDVSG-TGITYETGDHVGVYVEN 204 (558)
Q Consensus 159 ~~~~v~~~~~l~~~~~~~~~~~i~l~~~~-~~~~y~~GD~l~i~p~N 204 (558)
+.++|++++.+++ +++.++|..++ ..+.|+||.++.|..+.
T Consensus 10 ~~~~V~~~~~~t~-----~~~~l~l~~~~~~~~~~~pGQ~v~l~~p~ 51 (290)
T 2r6h_A 10 WECEVLSNKNVST-----FIKEFVVKLPEGETMNFKSGSYAQIKIPK 51 (290)
T ss_dssp EEEEEEEEEESSS-----SEEEEEEECSTTCCCCCCTTCEEEEEECS
T ss_pred EEEEEEEeeecCC-----CeEEEEEEcCCCCccccCCCceEEEEccc
Confidence 5789999999984 68999999875 35789999999997654
No 101
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=39.90 E-value=27 Score=32.70 Aligned_cols=45 Identities=9% Similarity=0.190 Sum_probs=35.4
Q ss_pred CCCceeEEEEeeeecCCCCCCCcEEEEEEEe-c-CC---CccccCCCeEEEeecC
Q 008647 155 IHHPCRVNVAVRRELHKPDSDRSCIHLEFDV-S-GT---GITYETGDHVGVYVEN 204 (558)
Q Consensus 155 ~~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~-~-~~---~~~y~~GD~l~i~p~N 204 (558)
...++.++|++.+.+++ +++.++|.. + +. ...|+||.++.|..++
T Consensus 7 ~~~~~~~~V~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~ 56 (250)
T 1tvc_A 7 EVGSFEAEVVGLNWVSS-----NTVQFLLQKRPDECGNRGVKFEPGQFMDLTIPG 56 (250)
T ss_dssp CSSEEEEEBCCCEEEET-----TEEEEEECSSTTSSSSSCCSCCSCCEEEECTTS
T ss_pred CcceEEEEEEEEEEcCC-----CeEEEEEEecCCCCcccccCcCCCcEEEEEeCC
Confidence 34456789999999974 689999987 6 42 5789999999998643
No 102
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=35.84 E-value=12 Score=33.79 Aligned_cols=57 Identities=21% Similarity=0.235 Sum_probs=39.3
Q ss_pred CCCceEEEEeecCcCc-------hHHHHHHHHHHHHHHhCCCeEeecCcccCCCCCchhHHHHH
Q 008647 39 LQQLKFGVFGLGNRQY-------EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 95 (558)
Q Consensus 39 l~~~~~avfGlGds~y-------~~f~~~~~~l~~~l~~lGa~~i~~~~~~d~~~~~~~~~~~W 95 (558)
....+++|+-.||..+ .-++..+..+.++|++.|++.+.-....|+.......+..|
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a 76 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDA 76 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHH
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHH
Confidence 6778999999999765 34677788899999999997654444445442333344443
No 103
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=34.45 E-value=77 Score=29.93 Aligned_cols=43 Identities=9% Similarity=0.170 Sum_probs=34.2
Q ss_pred CCceeEEEEeeeecCCCCCCCcEEEEEEEecCC--CccccCCCeEEEeec
Q 008647 156 HHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGT--GITYETGDHVGVYVE 203 (558)
Q Consensus 156 ~~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~--~~~y~~GD~l~i~p~ 203 (558)
...+.++|++.+.++. +++.++|.+++. ...|+||.++.|..+
T Consensus 14 ~~~~~~~V~~~~~~~~-----~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~ 58 (275)
T 1umk_A 14 DIKYPLRLIDREIISH-----DTRRFRFALPSPQHILGLPVGQHIYLSAR 58 (275)
T ss_dssp TCCEEEEEEEEEECSS-----SEEEEEEECSSTTCBCCCCTTCEEEEEEE
T ss_pred CccEEEEEEEEEEcCC-----CeEEEEEEcCCcccccCCCCCcEEEEEEe
Confidence 3346789999999974 688999988753 368999999999854
No 104
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=34.42 E-value=42 Score=31.75 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=33.2
Q ss_pred eEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecCC
Q 008647 160 RVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENC 205 (558)
Q Consensus 160 ~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~ 205 (558)
.++|++.+.+++ +++.++|..++....|+||.++.|..++.
T Consensus 7 ~~~V~~~~~~t~-----~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~ 47 (262)
T 1ep3_B 7 MMTVVSQREVAY-----NIFEMVLKGTLVDEMDLPGQFLHLAVPNG 47 (262)
T ss_dssp EEEEEEEEEEET-----TEEEEEEESGGGGGCCSTTCEEEECCSCT
T ss_pred ceEEEEEEEecC-----CEEEEEEEcCcccccCCCCceEEEEcCCC
Confidence 589999999974 68999998765346899999999986653
No 105
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=34.06 E-value=62 Score=29.65 Aligned_cols=40 Identities=8% Similarity=0.207 Sum_probs=32.6
Q ss_pred eeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecC
Q 008647 159 CRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVEN 204 (558)
Q Consensus 159 ~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N 204 (558)
+.++|++.+.+++ +++.++|..++ .+.|+||.++.|..++
T Consensus 3 ~~~~V~~~~~~~~-----~~~~l~l~~~~-~~~~~pGq~v~l~~~~ 42 (232)
T 1qfj_A 3 LSCKVTSVEAITD-----TVYRVRIVPDA-AFSFRAGQYLMVVMDE 42 (232)
T ss_dssp EEEEEEEEEESSS-----SCEEEEEEESS-CCCCCTTCEEEEESSS
T ss_pred eEEEEEEEEecCC-----CEEEEEEecCC-CCCcCCCCEEEEECCC
Confidence 4688999999974 58899998764 6799999999998653
No 106
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=33.71 E-value=66 Score=31.59 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=34.7
Q ss_pred ceeEEEEeeeecCCCCCCCcEEEEEEEecCC--CccccCCCeEEEeecC
Q 008647 158 PCRVNVAVRRELHKPDSDRSCIHLEFDVSGT--GITYETGDHVGVYVEN 204 (558)
Q Consensus 158 ~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~--~~~y~~GD~l~i~p~N 204 (558)
.+.++|++.+.+++ +++.++|..++. ...|+||.++.|..++
T Consensus 108 ~~~~~V~~~~~~~~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~ 151 (338)
T 1krh_A 108 HFEGTLARVENLSD-----STITFDIQLDDGQPDIHFLAGQYVNVTLPG 151 (338)
T ss_dssp EEEEEEEEEEESSS-----SEEEEEEEECTTCCCCCCCTTCEEEEECTT
T ss_pred EEEEEEEEEEEcCC-----CEEEEEEEeCCCCCCCCcCCCCeEEEEcCC
Confidence 45789999999984 699999998763 5889999999998654
No 107
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=33.11 E-value=69 Score=30.15 Aligned_cols=42 Identities=14% Similarity=0.279 Sum_probs=33.8
Q ss_pred CceeEEEEeeeecCCCCCCCcEEEEEEEecCC--CccccCCCeEEEeec
Q 008647 157 HPCRVNVAVRRELHKPDSDRSCIHLEFDVSGT--GITYETGDHVGVYVE 203 (558)
Q Consensus 157 ~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~--~~~y~~GD~l~i~p~ 203 (558)
..+.++|++++.++. +++.++|..++. ...|+||.++.|..+
T Consensus 11 ~~~~~~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~ 54 (270)
T 2cnd_A 11 GRIHCRLVAKKELSR-----DVRLFRFSLPSPDQVLGLPIGKHIFVCAT 54 (270)
T ss_dssp CCEEEEEEEEEEEET-----TEEEEEEECSSTTCCCCCCTTCEEEEEEE
T ss_pred ceEEEEEEEEEEeCC-----CeEEEEEECCCCccccCCCCCCEEEEEee
Confidence 346789999999984 688999988753 468999999999754
No 108
>2xpn_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.95A {Encephalitozoon cuniculi} PDB: 2xpo_B
Probab=32.32 E-value=19 Score=21.01 Aligned_cols=12 Identities=33% Similarity=0.838 Sum_probs=9.6
Q ss_pred CceEEEEeecCc
Q 008647 41 QLKFGVFGLGNR 52 (558)
Q Consensus 41 ~~~~avfGlGds 52 (558)
.+-|-|||+||.
T Consensus 3 slFyEIFGtG~E 14 (26)
T 2xpn_B 3 HMFFEIFGTGEE 14 (26)
T ss_pred cEEEEEecCCce
Confidence 456889999986
No 109
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=32.10 E-value=30 Score=34.57 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.6
Q ss_pred CCEEEEccCcc--ccchHHHHHHHHH
Q 008647 408 VPIIMVGPGTG--LAPFRGFLQERMA 431 (558)
Q Consensus 408 ~plilIa~GtG--IAP~~s~l~~~~~ 431 (558)
+.|++.||||| |.|.+++.+++.+
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~ 28 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQA 28 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHh
Confidence 47899999997 8999999988765
No 110
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=30.91 E-value=72 Score=30.20 Aligned_cols=42 Identities=12% Similarity=0.201 Sum_probs=34.0
Q ss_pred CceeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecC
Q 008647 157 HPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVEN 204 (558)
Q Consensus 157 ~~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N 204 (558)
.++.++|++.+.+++ +++.++|..++ ...|+||.++.|..+.
T Consensus 15 ~~~~~~V~~~~~~~~-----~~~~l~l~~~~-~~~~~pGQ~v~l~~~~ 56 (272)
T 2bgi_A 15 LPDAQTVTSVRHWTD-----TLFSFRVTRPQ-TLRFRSGEFVMIGLLD 56 (272)
T ss_dssp -CEEEEEEEEEEEET-----TEEEEEEECCT-TCCCCTTCEEEEEEEC
T ss_pred EeEEEEEEEEEEcCC-----CEEEEEEeCCC-CCccCCCCEEEEEecc
Confidence 446799999999985 58899998764 5789999999998763
No 111
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=29.49 E-value=31 Score=30.62 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=39.0
Q ss_pred CCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEeecCcccCCCCCchhHHHHH
Q 008647 39 LQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 95 (558)
Q Consensus 39 l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i~~~~~~d~~~~~~~~~~~W 95 (558)
....+++|+-.||.--..++..+..+.++|+++|++...-....|+.....+.+..|
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~ 67 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAG 67 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHH
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHH
Confidence 466899999999987545667777889999999997654444445443334444444
No 112
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=29.32 E-value=99 Score=28.43 Aligned_cols=41 Identities=10% Similarity=0.185 Sum_probs=33.1
Q ss_pred ceeEEEEeeeecCCCCCCCcEEEEEEEecCC--CccccCCCeEEEeec
Q 008647 158 PCRVNVAVRRELHKPDSDRSCIHLEFDVSGT--GITYETGDHVGVYVE 203 (558)
Q Consensus 158 ~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~--~~~y~~GD~l~i~p~ 203 (558)
...++|++++.+++ +++.++|.+++. ...|+||.++.|..+
T Consensus 11 ~~~~~v~~~~~~t~-----~~~~~~l~~~~~~~~~~~~pGq~v~l~~~ 53 (243)
T 2eix_A 11 YKKFMLREKQIINH-----NTRLFRFNLHHPEDVVGLPIGQHMSVKAT 53 (243)
T ss_dssp CEEEEEEEEEEEET-----TEEEEEEECSSTTCCCCCCTTCEEEEEEE
T ss_pred eEEEEEEEEEEeCC-----CeEEEEEEcCCCCcccCcCCceEEEEEEe
Confidence 34689999999985 588889888753 478999999999865
No 113
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=28.97 E-value=91 Score=30.40 Aligned_cols=42 Identities=19% Similarity=0.297 Sum_probs=33.8
Q ss_pred ceeEEEEeeeecCCCCCCCcEEEEEEEecCC-C-ccccCCCeEEEeecC
Q 008647 158 PCRVNVAVRRELHKPDSDRSCIHLEFDVSGT-G-ITYETGDHVGVYVEN 204 (558)
Q Consensus 158 ~~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~-~-~~y~~GD~l~i~p~N 204 (558)
.+.++|++.+.+++ +++.++|..++. . ..|+||.++.|..+|
T Consensus 8 ~~~~~V~~~~~~t~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~ 51 (321)
T 2pia_A 8 FLRLKIASKEKIAR-----DIWSFELTDPQGAPLPPFEAGANLTVAVPN 51 (321)
T ss_dssp CEEEEEEEEEEEET-----TEEEEEEECTTCCCCCCCCTTCEEEEECTT
T ss_pred cEEEEEEEEEEcCC-----CEEEEEEEcCCCCcCCCCCCCCEEEEECCC
Confidence 35789999999984 689999997753 2 389999999998764
No 114
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=28.85 E-value=2.1e+02 Score=27.47 Aligned_cols=105 Identities=11% Similarity=-0.096 Sum_probs=65.3
Q ss_pred CcEEEEEeccCCCCCCCccHHHHHHHHhcCCC----------------CCCCCCCceEEEEeecCc---Cc--hHHHHHH
Q 008647 3 HSIYLRLTCRYGDGEPTDNAARFYKWFTEGND----------------RGPWLQQLKFGVFGLGNR---QY--EHFNKIG 61 (558)
Q Consensus 3 ~~~~i~~~sT~G~G~~p~n~~~f~~~l~~~~~----------------~~~~l~~~~~avfGlGds---~y--~~f~~~~ 61 (558)
.+.|||+.+.| .+.+|.-.+.|.+.+..... +...|.|+++.++-.-.. .| .-|+...
T Consensus 113 aD~iv~~~P~~-w~~~Pa~lK~~iDrv~~~g~ay~~~~~~~~~~~~~~~~g~l~gKk~~l~~T~g~~~~~y~~~g~~~~~ 191 (280)
T 4gi5_A 113 ADTVIFQFPLW-WFSMPAIMKGWIDRVYAWGFAYGVGEHSDRHWGDRYGEGTFVGKRAMLIVTAGGWAEHYSPRGINGPI 191 (280)
T ss_dssp CSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBSCSCBSSSCBSSCSSCSTTTTCEEEEEEECSSCGGGGSTTBTTCCH
T ss_pred CCEEEEEeccc-cccCcHHHHHHHHHhcccCceeccCCccccccccccCccccCCCEEEEEEecCCChHHccccccCCCH
Confidence 57899999999 78899999999998864211 123577888876644333 33 1233322
Q ss_pred HHHHHH-----HHhCCCeEeecCcccCCCCCchhHHHHHHHHHHHHHHHhhc
Q 008647 62 IVLDEE-----LCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLR 108 (558)
Q Consensus 62 ~~l~~~-----l~~lGa~~i~~~~~~d~~~~~~~~~~~W~~~l~~~l~~~~~ 108 (558)
..+-.. +.-+|.+.+-+....+.....+.++.+|++++-+.|..+..
T Consensus 192 ~~~l~~~~~~~~~~~Gm~~l~~f~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 243 (280)
T 4gi5_A 192 DDILFPIQHGMLFYPGFEVLPPLVFYRTDKTDAGQFADQCAALAERLDTLWQ 243 (280)
T ss_dssp HHHTHHHHCCCCCTTTCEECCCEEECSGGGCCHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHcCCCeECCcEEEecCCCCCHHHHHHHHHHHHHHHhhhhh
Confidence 222111 12247766544444443334677888998888787776654
No 115
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=27.43 E-value=1.2e+02 Score=27.90 Aligned_cols=41 Identities=12% Similarity=0.134 Sum_probs=32.9
Q ss_pred eEEEEeeeecCCCCCCCcEEEEEEEecCC--CccccCCCeEEEeecCC
Q 008647 160 RVNVAVRRELHKPDSDRSCIHLEFDVSGT--GITYETGDHVGVYVENC 205 (558)
Q Consensus 160 ~~~v~~~~~l~~~~~~~~~~~i~l~~~~~--~~~y~~GD~l~i~p~N~ 205 (558)
.++|++.+.+++ +++.++|..++. ...|+||.++.|..+.+
T Consensus 5 ~~~V~~~~~~~~-----~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~ 47 (243)
T 4eh1_A 5 TFVVREKQVESA-----YVTSFVLVPADGGAVLDYQPGQYIGIEVTPE 47 (243)
T ss_dssp EEEEEEEEECSS-----SEEEEEEEESSCSCCCCCCTTCEEEEEECCS
T ss_pred EEEEEEEEEcCC-----CeEEEEEEeCCCCcCCCcCCCCEEEEEEecC
Confidence 578999998874 689999997652 37899999999987653
No 116
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=27.28 E-value=1e+02 Score=28.74 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=32.8
Q ss_pred eeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeecC
Q 008647 159 CRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVEN 204 (558)
Q Consensus 159 ~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N 204 (558)
..++|++.+.+++ +++.++|..++ ...|+||.++.|..+.
T Consensus 4 ~~~~V~~~~~~~~-----~~~~l~l~~~~-~~~~~pGq~v~l~~~~ 43 (257)
T 2qdx_A 4 YTERVLSVHHWND-----TLFSFKTTRNP-GLRFKTGQFVMIGLEV 43 (257)
T ss_dssp EEEEEEEEEEEET-----TEEEEEEECCT-TCCCCTTCEEEEEEEE
T ss_pred EEEEEEEEEEcCC-----CeEEEEEeCCC-CCccCCCCEEEEEecC
Confidence 4689999999985 58899988764 5789999999998753
No 117
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*
Probab=26.76 E-value=97 Score=30.43 Aligned_cols=45 Identities=9% Similarity=0.174 Sum_probs=37.3
Q ss_pred cHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 21 NAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 21 n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
++.-|.+.|.....+ +.+.+..|+|.| .+++.+-..|.++|+++|
T Consensus 131 D~~Gf~~~L~~~~~~---l~gk~~lVlGAG--------Gaaraia~~L~~~G~~~v 175 (312)
T 3t4e_A 131 DGTGHIRAIKESGFD---MRGKTMVLLGAG--------GAATAIGAQAAIEGIKEI 175 (312)
T ss_dssp HHHHHHHHHHHTTCC---CTTCEEEEECCS--------HHHHHHHHHHHHTTCSEE
T ss_pred cHHHHHHHHHhcCCC---cCCCEEEEECcC--------HHHHHHHHHHHHcCCCEE
Confidence 367799999765433 789999999999 789999999999999765
No 118
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=26.67 E-value=28 Score=31.88 Aligned_cols=55 Identities=20% Similarity=0.183 Sum_probs=34.2
Q ss_pred CceEEEEeecCcCc--hHHHHHHHHHHHHHHhCCCe--EeecCcccCCCCCchhHHHHH
Q 008647 41 QLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGA--RLVPLGLGDDDQCIEDDFTAW 95 (558)
Q Consensus 41 ~~~~avfGlGds~y--~~f~~~~~~l~~~l~~lGa~--~i~~~~~~d~~~~~~~~~~~W 95 (558)
..+++|+-.||..+ ..++..+..|.++|++.|++ .+.-....|+.......+..|
T Consensus 3 ~~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a 61 (195)
T 1di6_A 3 TLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCEL 61 (195)
T ss_dssp CEEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHH
Confidence 46899999999987 45777778899999999987 333333344443334444444
No 119
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=26.62 E-value=24 Score=31.68 Aligned_cols=55 Identities=18% Similarity=0.051 Sum_probs=39.5
Q ss_pred ceEEEEeecCcCc--hHHHHHHHHHHHHHHhCCCeEeecCcccCCCCCchhHHHHHH
Q 008647 42 LKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWR 96 (558)
Q Consensus 42 ~~~avfGlGds~y--~~f~~~~~~l~~~l~~lGa~~i~~~~~~d~~~~~~~~~~~W~ 96 (558)
++++|+-.||.-. ..++.-+..|.++|.++|+....-....|+.......+..|.
T Consensus 4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~ 60 (172)
T 3kbq_A 4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVAL 60 (172)
T ss_dssp CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHH
T ss_pred CEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHH
Confidence 7899999999855 456677788889999999976554455565544555555554
No 120
>1lxj_A YBL001C, hypothetical 11.5KDA protein in HTB2-NTH2 interge region; hypothetical protein, HTB2-NTH2 intergenic region; 1.80A {Saccharomyces cerevisiae} SCOP: d.58.48.1
Probab=26.45 E-value=88 Score=25.39 Aligned_cols=77 Identities=14% Similarity=-0.004 Sum_probs=51.6
Q ss_pred CCCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCc---CchHHHHHHHHHHHHHHhCCCeEeecCcccCCCCCchhHHH
Q 008647 17 EPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNR---QYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFT 93 (558)
Q Consensus 17 ~~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds---~y~~f~~~~~~l~~~l~~lGa~~i~~~~~~d~~~~~~~~~~ 93 (558)
+..+-.....+.|+. +|++|-+=.+|=. .|+.--.+.+++.+.+.+.|+.|+.-..+.|+..+....++
T Consensus 21 svs~~Va~~i~~i~~--------sGl~y~~~pm~T~IEGe~devm~vv~~~~e~~~~~G~~RV~~~iKid~R~d~~~~~~ 92 (104)
T 1lxj_A 21 SISDFVALIEKKIRE--------SPLKSTLHSAGTTIEGPWDDVMGLIGEIHEYGHEKGYVRVHTDIRVGTRTDKHQTAQ 92 (104)
T ss_dssp CCHHHHHHHHHHHHT--------SSSEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSSCCCCHH
T ss_pred CHHHHHHHHHHHHHH--------cCCCeEeCCCccEEEcCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEecCCCCCCHH
Confidence 444444556666654 2455555444333 38888899999999999999999999999998775455554
Q ss_pred HHHHHHHH
Q 008647 94 AWRELVWP 101 (558)
Q Consensus 94 ~W~~~l~~ 101 (558)
.=++.+-+
T Consensus 93 ~Kv~~v~~ 100 (104)
T 1lxj_A 93 DKIDVVLK 100 (104)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 43333333
No 121
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=25.07 E-value=90 Score=29.39 Aligned_cols=39 Identities=10% Similarity=0.142 Sum_probs=32.7
Q ss_pred eeEEEEeeeecCCCCCCCcEEEEEEEecCCCccccCCCeEEEeec
Q 008647 159 CRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVE 203 (558)
Q Consensus 159 ~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~ 203 (558)
+.++|++.+.+++ +++.++|..++ ...|+||.++.|..+
T Consensus 20 ~~~~V~~~~~~~~-----~~~~~~l~~~~-~~~~~pGQ~v~l~~~ 58 (271)
T 4fk8_A 20 DTATVLSVHHWTD-----TLFSFTCTRDQ-ALRFNNGEFTMVGLE 58 (271)
T ss_dssp EEEEEEEEEEEET-----TEEEEEECCCT-TCCCCTTCEEEEEEE
T ss_pred eeEEEEEEEEcCC-----CEEEEEEEcCC-CCCcCCCCEEEEEcc
Confidence 5689999999984 68899988765 689999999999765
No 122
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=23.91 E-value=20 Score=32.64 Aligned_cols=57 Identities=16% Similarity=0.059 Sum_probs=39.7
Q ss_pred CCCCceEEEEeecCcCc--hHHHHHHHHHHHHHHhCCCeEeecCcccCCCCCchhHHHHH
Q 008647 38 WLQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 95 (558)
Q Consensus 38 ~l~~~~~avfGlGds~y--~~f~~~~~~l~~~l~~lGa~~i~~~~~~d~~~~~~~~~~~W 95 (558)
..+..+++|+-.||.-+ . ++..+..+.++|++.|++...-....|+.......+..|
T Consensus 27 ~~~~~rvaIistGdEl~~G~-~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a 85 (185)
T 3rfq_A 27 ELVVGRALVVVVDDRTAHGD-EDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTA 85 (185)
T ss_dssp --CCEEEEEEEECHHHHTTC-CCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECcccCCCC-cCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHH
Confidence 45778999999999976 5 788888999999999997664444445443333444433
No 123
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=22.72 E-value=38 Score=30.12 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=38.8
Q ss_pred CCCceEEEEeecCcCchH-------HHHHHHHHHHHHHhCCCeEeecCcccCCCCCchhHHHHH
Q 008647 39 LQQLKFGVFGLGNRQYEH-------FNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 95 (558)
Q Consensus 39 l~~~~~avfGlGds~y~~-------f~~~~~~l~~~l~~lGa~~i~~~~~~d~~~~~~~~~~~W 95 (558)
-+.+++||+=.||+.|.. ....+..|.++|.++|.+-+.-....|+.......+..|
T Consensus 13 ~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~ 76 (178)
T 3iwt_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDA 76 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHH
T ss_pred CCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHH
Confidence 356899999999987631 356678899999999997665555555543333333333
No 124
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=21.91 E-value=1.4e+02 Score=29.33 Aligned_cols=45 Identities=11% Similarity=0.222 Sum_probs=36.9
Q ss_pred cHHHHHHHHhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 21 NAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 21 n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
++.-|.+.|.....+ +++.+..|+|.| .+++.+-..|.+.|+.+|
T Consensus 137 D~~Gf~~~L~~~~~~---l~gk~~lVlGaG--------G~g~aia~~L~~~Ga~~V 181 (315)
T 3tnl_A 137 DGTGYMRALKEAGHD---IIGKKMTICGAG--------GAATAICIQAALDGVKEI 181 (315)
T ss_dssp HHHHHHHHHHHTTCC---CTTSEEEEECCS--------HHHHHHHHHHHHTTCSEE
T ss_pred CHHHHHHHHHHcCCC---ccCCEEEEECCC--------hHHHHHHHHHHHCCCCEE
Confidence 377899999764433 889999999998 578999999999999655
No 125
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=21.72 E-value=1.5e+02 Score=29.71 Aligned_cols=40 Identities=13% Similarity=0.262 Sum_probs=32.8
Q ss_pred eeEEEEeeeecCCCCCCCcEEEEEEEecCC--CccccCCCeEEEeec
Q 008647 159 CRVNVAVRRELHKPDSDRSCIHLEFDVSGT--GITYETGDHVGVYVE 203 (558)
Q Consensus 159 ~~~~v~~~~~l~~~~~~~~~~~i~l~~~~~--~~~y~~GD~l~i~p~ 203 (558)
..++|++++.++. +++.++|..++. -..|+||+++.|..+
T Consensus 153 ~~~~V~~~~~~s~-----~i~~~~l~~~~~~~~~~~~pGQ~v~l~~~ 194 (396)
T 1gvh_A 153 RDFRIVAKTPRSA-----LITSFELEPVDGGAVAEYRPGQYLGVWLK 194 (396)
T ss_dssp EEEEEEEEEECSS-----SEEEEEEEETTCCCCCCCCTTCEEEEEEC
T ss_pred EEEEEEEEEEcCC-----CeEEEEEEeCCCCcCCCCCCCCeEEEEec
Confidence 4689999999874 688999998753 258999999999876
No 126
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=21.63 E-value=32 Score=31.23 Aligned_cols=58 Identities=19% Similarity=0.307 Sum_probs=39.6
Q ss_pred CCCceEEEEeecCcCc--hHHHHHHHHHHHHHHh---CCCeEeecCcccCCCCCchhHHHHHH
Q 008647 39 LQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCK---QGGARLVPLGLGDDDQCIEDDFTAWR 96 (558)
Q Consensus 39 l~~~~~avfGlGds~y--~~f~~~~~~l~~~l~~---lGa~~i~~~~~~d~~~~~~~~~~~W~ 96 (558)
...++++|+-.||.-+ ..++..+..|.++|++ +|++.+.-....|+.......+..|.
T Consensus 12 ~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~ 74 (189)
T 1jlj_A 12 DHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWC 74 (189)
T ss_dssp -CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHh
Confidence 4568999999999965 3456677789999998 89876655455555433444454443
No 127
>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} SCOP: d.58.48.1
Probab=20.92 E-value=1.8e+02 Score=23.80 Aligned_cols=67 Identities=3% Similarity=-0.024 Sum_probs=45.9
Q ss_pred CCccHHHHHHHHhcCCCCCCCCCCceEEEEeecCc---CchHHHHHHHHHHHHHHhCCCeEeecCcccCCCCCchhHH
Q 008647 18 PTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNR---QYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDF 92 (558)
Q Consensus 18 ~p~n~~~f~~~l~~~~~~~~~l~~~~~avfGlGds---~y~~f~~~~~~l~~~l~~lGa~~i~~~~~~d~~~~~~~~~ 92 (558)
..+-...+.+.|+.. |++|-+=.+|-. .|+.--.+.+++.+.+.+.|+.|+.-..+.|+..+....+
T Consensus 23 vs~~Va~~i~vl~~s--------Gl~y~~~pmgT~IEGe~devm~vv~~~~e~~~~~G~~RV~t~iKId~R~dk~~t~ 92 (109)
T 1yqh_A 23 VYSVVDKAIEVVQQS--------GVRYEVGAMETTLEGELDVLLDVVKRAQQACVDAGAEEVITSIKIHYRPSTGVTI 92 (109)
T ss_dssp HHHHHHHHHHHHHHS--------CSEEEECSSCEEEEECHHHHHHHHHHHHHHHHHTTCSEEEEEEEEECCTTTCCCH
T ss_pred HHHHHHHHHHHHHHc--------CCCeEecCCccEEEcCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEecCCCCCCH
Confidence 344444666666542 344433333222 4888889999999999999999999999999876533333
No 128
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=20.76 E-value=19 Score=31.91 Aligned_cols=54 Identities=13% Similarity=0.256 Sum_probs=36.3
Q ss_pred ceEEEEeecCcCc--hHHHHHHHHHHHHHHhCCCeEeecCcccCCCCCchhHHHHH
Q 008647 42 LKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 95 (558)
Q Consensus 42 ~~~avfGlGds~y--~~f~~~~~~l~~~l~~lGa~~i~~~~~~d~~~~~~~~~~~W 95 (558)
++++|+-.||.-+ .-++..+..+.++|+++|++...-....|+.....+.+..|
T Consensus 2 ~~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~ 57 (164)
T 2is8_A 2 FRVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLW 57 (164)
T ss_dssp EEEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHH
T ss_pred cEEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHH
Confidence 4789999999855 34566677788999999986654444445443344444444
No 129
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}
Probab=20.20 E-value=1.7e+02 Score=27.90 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=37.9
Q ss_pred CCCCccHHHHHHH-HhcCCCCCCCCCCceEEEEeecCcCchHHHHHHHHHHHHHHhCCCeEe
Q 008647 16 GEPTDNAARFYKW-FTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 76 (558)
Q Consensus 16 G~~p~n~~~f~~~-l~~~~~~~~~l~~~~~avfGlGds~y~~f~~~~~~l~~~l~~lGa~~i 76 (558)
|.-+| +.-|.+. |+....+ +++.+..|+|.| .+++.+-..|.+.|+.+|
T Consensus 98 G~NTD-~~G~~~~lL~~~~~~---l~~k~~lvlGaG--------g~~~aia~~L~~~G~~~v 147 (272)
T 3pwz_A 98 AENFD-GIGLLRDIEENLGEP---LRNRRVLLLGAG--------GAVRGALLPFLQAGPSEL 147 (272)
T ss_dssp EECCH-HHHHHHHHHTTSCCC---CTTSEEEEECCS--------HHHHHHHHHHHHTCCSEE
T ss_pred EecCC-HHHHHHHHHHHcCCC---ccCCEEEEECcc--------HHHHHHHHHHHHcCCCEE
Confidence 44444 7789998 7654333 789999999999 578899999999998555
Done!